##fileformat=VCFv4.1
##FILTER=<ID=LowQual,Description="Low quality">
##FILTER=<ID=SnpCluster,Description="SNPs found in clusters">
##FILTER=<ID=filter,Description="(AB ?: 0) > 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##GATKCommandLine=<ID=VariantFiltration,CommandLineOptions="analysis_type=VariantFiltration input_file=[] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/srv/gs1/projects/cherry/giltae/strains/hugeseq/YJM339/chrI.snp.gatk.vcf) mask=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub filterExpression=[(AB ?: 0) > 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 21:33:47 PST 2014",Epoch=1389764027756,Version=2.8-1-g932cd3a>
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SB,Number=1,Type=Float,Description="Strand Bias">
##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/YJM339/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false"
##contig=<ID=chrI,length=230218>
##contig=<ID=chrII,length=813184>
##contig=<ID=chrIII,length=316620>
##contig=<ID=chrIV,length=1531933>
##contig=<ID=chrV,length=576874>
##contig=<ID=chrVI,length=270161>
##contig=<ID=chrVII,length=1090940>
##contig=<ID=chrVIII,length=562643>
##contig=<ID=chrIX,length=439888>
##contig=<ID=chrX,length=745751>
##contig=<ID=chrXI,length=666816>
##contig=<ID=chrXII,length=1078177>
##contig=<ID=chrXIII,length=924431>
##contig=<ID=chrXIV,length=784333>
##contig=<ID=chrXV,length=1091291>
##contig=<ID=chrXVI,length=948066>
##contig=<ID=chrM,length=85779>
##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	YJM339
chrI	136	.	G	A	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=2.9694;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=3.73;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:46,6,0
chrI	156	.	C	T	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=12.2199;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=0;MQRankSum=1.231;QD=3.63;ReadPosRankSum=0.358;SB=1.34	GT:AD:DP:GQ:PL	1/1:3,2:6:6:53,6,0
chrI	162	.	C	T	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.988;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=13.1933;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=0;MQRankSum=1.537;QD=3.80;ReadPosRankSum=0.406;SB=1.24	GT:AD:DP:GQ:PL	1/1:3,3:6:6:54,6,0
chrI	524	.	G	A	95.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DP=25;Dels=0.00;FS=10.296;HaplotypeScore=13.5511;MLEAC=1;MLEAF=0.500;MQ=19.32;MQ0=9;MQRankSum=2.332;QD=3.80;ReadPosRankSum=0.271;SB=1.45	GT:AD:DP:GQ:PL	0/1:17,7:25:65:125,0,65
chrI	588	.	C	A	106.03	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DP=48;Dels=0.00;FS=2.370;HaplotypeScore=8.0217;MLEAC=1;MLEAF=0.500;MQ=15.77;MQ0=15;MQRankSum=-1.159;QD=2.21;ReadPosRankSum=1.659;SB=0.501	GT:AD:DP:GQ:PL	0/1:5,43:48:19:136,0,19
chrI	595	.	C	G	172.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.198;DP=48;Dels=0.00;FS=32.017;HaplotypeScore=6.2596;MLEAC=2;MLEAF=1.00;MQ=15.48;MQ0=15;MQRankSum=3.849;QD=3.58;ReadPosRankSum=-3.174;SB=-3.228e-02	GT:AD:DP:GQ:PL	1/1:33,14:48:24:205,24,0
chrI	610	.	G	A	38.97	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=9;QD=1.15;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:0,34:34:9:71,9,0
chrI	633	.	T	C	157.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.015;DP=38;Dels=0.00;FS=59.452;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.58;MQ0=0;MQRankSum=3.375;QD=4.13;ReadPosRankSum=3.494;SB=-4.093e-02	GT:AD:DP:GQ:PL	1/1:15,23:38:24:190,24,0
chrI	654	.	C	T	177.01	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=6;QD=5.06;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:0,35:35:27:210,27,0
chrI	665	.	A	G	81.26	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=7;QD=1.69;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:6,42:48:15:114,15,0
chrI	681	.	G	T	156.03	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.61;MQ0=7;QD=3.06;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,51:51:24:189,24,0
chrI	688	.	A	C	156.03	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.83;MQ0=7;QD=2.48;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:6,57:63:24:189,24,0
chrI	693	.	T	A	153.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.37;MQ0=7;MQRankSum=0.279;QD=2.22;ReadPosRankSum=1.676;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:1,68:69:24:186,24,0
chrI	699	.	T	C	131.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.81;MQ0=7;QD=1.99;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:6,59:66:21:164,21,0
chrI	701	.	C	A	153.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=19.03;MQ0=7;QD=2.19;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,66:70:24:186,24,0
chrI	738	.	C	A	360	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.58;MQ0=3;QD=4.86;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,74:74:45:393,45,0
chrI	743	.	A	T	367	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.65;MQ0=3;QD=5.03;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:1,72:73:45:400,45,0
chrI	772	.	C	T	402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.832;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=2;MQRankSum=0.024;QD=7.44;ReadPosRankSum=2.355;SB=-4.701e+01	GT:AD:DP:GQ:PL	1/1:3,51:54:51:435,51,0
chrI	773	.	T	C	309.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;DP=54;Dels=0.00;FS=18.622;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=2;MQRankSum=-0.648;QD=5.73;ReadPosRankSum=2.365;SB=-2.550e+00	GT:AD:DP:GQ:PL	1/1:4,49:54:4:340,4,0
chrI	801	.	G	A	60.42	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=17;Dels=0.00;FS=3.274;HaplotypeScore=10.5829;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=-0.306;QD=3.55;ReadPosRankSum=-1.531;SB=-6.891e+01	GT:AD:DP:GQ:PL	0/1:1,16:17:7:90,0,7
chrI	807	.	G	A	54.14	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DP=17;Dels=0.00;FS=43.858;HaplotypeScore=10.5829;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=0;MQRankSum=0.241;QD=3.18;ReadPosRankSum=1.780;SB=-2.636e+00	GT:AD:DP:GQ:PL	0/1:9,8:17:12:84,0,12
chrI	811	.	G	T	97.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=14.4142;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=0;QD=7.48;SB=-8.076e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:15:130,15,0
chrI	812	.	C	G	67.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=13.4408;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=0;QD=5.19;SB=-7.255e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:12:100,12,0
chrI	814	.	A	G	91.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.312;DP=13;Dels=0.00;FS=9.792;HaplotypeScore=12.4674;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=0;MQRankSum=2.083;QD=7.02;ReadPosRankSum=0.540;SB=-7.376e+01	GT:AD:DP:GQ:PL	1/1:4,9:13:15:124,15,0
chrI	815	.	C	T	26.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;DP=13;Dels=0.00;FS=23.314;HaplotypeScore=12.4674;MLEAC=1;MLEAF=0.500;MQ=22.68;MQ0=0;MQRankSum=0.377;QD=2.00;ReadPosRankSum=0.101;SB=0.204	GT:AD:DP:GQ:PL	0/1:6,7:13:33:56,0,33
chrI	820	.	T	C	28.01	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;DP=15;Dels=0.00;FS=26.994;HaplotypeScore=7.6627;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=0;MQRankSum=0.177;QD=1.87;ReadPosRankSum=0.059;SB=0.781	GT:AD:DP:GQ:PL	0/1:6,9:15:33:58,0,33
chrI	826	.	T	C	88.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=11.4940;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=0;QD=6.30;SB=-5.120e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:15:121,15,0
chrI	827	.	A	G	30.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192;DP=14;Dels=0.00;FS=19.590;HaplotypeScore=11.4940;MLEAC=1;MLEAF=0.500;MQ=24.12;MQ0=0;MQRankSum=-0.354;QD=2.14;ReadPosRankSum=-0.636;SB=1.44	GT:AD:DP:GQ:PL	0/1:4,10:14:33:60,0,33
chrI	831	.	C	T	93.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=7.8084;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=0;QD=6.22;SB=-5.320e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:15:126,15,0
chrI	832	.	T	C	33.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DP=15;Dels=0.00;FS=6.410;HaplotypeScore=7.8084;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=0;MQRankSum=2.887;QD=2.20;ReadPosRankSum=0.177;SB=1.45	GT:AD:DP:GQ:PL	0/1:9,6:15:34:63,0,34
chrI	848	.	C	T	40.97	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=0;QD=2.56;SB=-2.285e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:9:73,9,0
chrI	890	.	T	A	20.80	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.45;MQ0=0;QD=2.60;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:6:52,6,0
chrI	899	.	C	T	88.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;QD=8.83;SB=-2.556e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:121,15,0
chrI	900	.	A	G	90.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;QD=9.03;SB=-2.556e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:123,15,0
chrI	904	.	G	A	90.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=0;QD=9.03;SB=-2.556e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:123,15,0
chrI	925	.	T	C	267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;MQRankSum=-1.761;QD=7.42;ReadPosRankSum=2.314;SB=-1.530e+02	GT:AD:DP:GQ:PL	1/1:2,34:36:36:300,36,0
chrI	929	.	A	C	411	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=0;QD=9.56;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:54:444,54,0
chrI	948	.	T	C	408.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.246;DP=67;Dels=0.00;FS=162.294;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=0;MQRankSum=-0.677;QD=6.09;ReadPosRankSum=-2.993;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:29,38:67:99:438,0,140
chrI	949	.	T	C	390.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.456;DP=67;Dels=0.01;FS=158.947;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=0;MQRankSum=-1.161;QD=5.82;ReadPosRankSum=-3.315;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:28,38:66:99:420,0,142
chrI	960	.	C	A	107.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.543;DP=74;Dels=0.00;FS=150.508;HaplotypeScore=2.5439;MLEAC=1;MLEAF=0.500;MQ=26.36;MQ0=0;MQRankSum=0.875;QD=1.45;ReadPosRankSum=-2.237;SB=-2.804e+00	GT:AD:DP:GQ:PL	0/1:45,29:74:99:137,0,452
chrI	963	.	T	C	104.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;DP=78;Dels=0.00;FS=160.251;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=0;MQRankSum=0.447;QD=1.33;ReadPosRankSum=-2.224;SB=0.205	GT:AD:DP:GQ:PL	0/1:48,30:78:99:134,0,396
chrI	968	.	C	T	94.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.013;DP=89;Dels=0.01;FS=171.839;HaplotypeScore=3.5104;MLEAC=1;MLEAF=0.500;MQ=25.54;MQ0=0;MQRankSum=2.091;QD=1.06;ReadPosRankSum=-2.267;SB=-2.189e-03	GT:AD:DP:GQ:PL	0/1:58,30:88:99:124,0,569
chrI	1025	.	C	T	947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=102;Dels=0.02;FS=4.300;HaplotypeScore=26.1535;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=3;MQRankSum=-0.952;QD=9.28;ReadPosRankSum=-0.165;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:2,98:100:96:980,96,0
chrI	1035	.	A	T	773	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.806;DP=90;Dels=0.00;FS=41.149;HaplotypeScore=2.7508;MLEAC=2;MLEAF=1.00;MQ=22.09;MQ0=3;MQRankSum=-1.147;QD=8.59;ReadPosRankSum=2.471;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:6,84:90:32:806,32,0
chrI	1074	.	C	A	174.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;DP=41;Dels=0.00;FS=38.666;HaplotypeScore=12.9745;MLEAC=1;MLEAF=0.500;MQ=23.31;MQ0=3;MQRankSum=-0.791;QD=4.24;ReadPosRankSum=-3.012;SB=-7.098e+01	GT:AD:DP:GQ:PL	0/1:7,34:41:36:204,0,36
chrI	1101	.	G	A	65.51	PASS	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=0;QD=13.10;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,5:5:12:98,12,0
chrI	1238	.	C	T	37.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.733;DP=14;Dels=0.00;FS=3.310;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=17.15;MQ0=4;MQRankSum=0.480;QD=2.71;ReadPosRankSum=0.000;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:2,12:14:9:70,9,0
chrI	1263	.	C	T	419	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.67;MQ0=4;QD=11.64;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:54:452,54,0
chrI	1279	.	C	T	715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.962;DP=56;Dels=0.02;FS=11.294;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=3;MQRankSum=1.418;QD=12.77;ReadPosRankSum=-0.407;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:6,49:55:70:748,70,0
chrI	1316	.	C	A	784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=80;Dels=0.00;FS=3.701;HaplotypeScore=20.0236;MLEAC=2;MLEAF=1.00;MQ=25.06;MQ0=3;MQRankSum=0.524;QD=9.80;ReadPosRankSum=0.162;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:18,62:80:39:817,39,0
chrI	1334	.	C	G	760	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=12.0892;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=2;QD=10.27;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,51:74:96:793,96,0
chrI	1365	.	C	G	49.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;DP=57;Dels=0.00;FS=42.368;HaplotypeScore=19.9919;MLEAC=1;MLEAF=0.500;MQ=26.60;MQ0=3;MQRankSum=-0.940;QD=0.86;ReadPosRankSum=2.063;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,14:57:79:79,0,162
chrI	1379	.	T	C	263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=6.2619;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=3;MQRankSum=1.271;QD=7.74;ReadPosRankSum=1.617;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:1,32:34:36:296,36,0
chrI	1382	.	G	A	181.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;DP=33;Dels=0.00;FS=19.737;HaplotypeScore=8.6443;MLEAC=1;MLEAF=0.500;MQ=24.32;MQ0=3;MQRankSum=0.950;QD=5.49;ReadPosRankSum=-0.136;SB=-1.750e+02	GT:AD:DP:GQ:PL	0/1:10,23:33:82:211,0,82
chrI	1397	.	A	G	103.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;DP=33;Dels=0.00;FS=45.936;HaplotypeScore=45.9209;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=1;MQRankSum=0.077;QD=3.12;ReadPosRankSum=1.343;SB=-6.095e+01	GT:AD:DP:GQ:PL	0/1:20,13:33:99:133,0,120
chrI	1422	.	T	A	77.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DP=31;Dels=0.00;FS=27.732;HaplotypeScore=4.8695;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=1;MQRankSum=-0.270;QD=2.48;ReadPosRankSum=-1.476;SB=-1.079e+02	GT:AD:DP:GQ:PL	0/1:17,14:31:99:107,0,195
chrI	1483	.	C	A	172.03	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=12.29;SB=-2.504e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:24:205,24,0
chrI	1505	.	T	G	14.20	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=0;MQRankSum=-0.731;QD=2.84;ReadPosRankSum=-0.731;SB=0.020	GT:AD:DP:GQ:PL	0/1:1,4:5:19:44,0,19
chrI	1506	.	T	G	43.97	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=0;QD=8.79;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:0,5:5:9:76,9,0
chrI	1609	.	G	A	155.03	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=7.3270;MLEAC=2;MLEAF=1.00;MQ=16.79;MQ0=3;QD=3.88;SB=-7.403e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:24:188,24,0
chrI	1612	.	G	T	146.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;DP=42;Dels=0.00;FS=26.402;HaplotypeScore=5.4952;MLEAC=1;MLEAF=0.500;MQ=16.99;MQ0=3;MQRankSum=1.330;QD=3.49;ReadPosRankSum=-2.120;SB=-1.777e+01	GT:AD:DP:GQ:PL	0/1:18,23:42:0:175,0,0
chrI	1658	.	C	T	199.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DP=77;Dels=0.00;FS=10.508;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=21.98;MQ0=15;MQRankSum=-1.534;QD=2.58;ReadPosRankSum=2.775;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:41,36:77:99:229,0,373
chrI	1677	.	C	T	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DP=95;Dels=0.00;FS=51.559;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=26.16;MQ0=14;MQRankSum=-0.227;QD=0.37;ReadPosRankSum=3.054;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,11:95:65:65,0,781
chrI	1707	.	A	G	197.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.221;DP=121;Dels=0.00;FS=61.874;HaplotypeScore=11.6635;MLEAC=1;MLEAF=0.500;MQ=30.38;MQ0=13;MQRankSum=-2.263;QD=1.63;ReadPosRankSum=4.954;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:82,38:121:99:227,0,1270
chrI	1770	.	T	G	357.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.293;DP=241;Dels=0.00;FS=10.468;HaplotypeScore=79.4789;MLEAC=1;MLEAF=0.500;MQ=32.05;MQ0=9;MQRankSum=-6.054;QD=1.48;ReadPosRankSum=2.371;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:148,92:241:99:387,0,3124
chrI	1802	.	T	C	809.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.626;DP=234;Dels=0.00;FS=21.055;HaplotypeScore=115.1416;MLEAC=1;MLEAF=0.500;MQ=32.75;MQ0=9;MQRankSum=-2.382;QD=3.46;ReadPosRankSum=-2.623;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:160,60:234:99:839,0,2593
chrI	1918	.	A	G	149.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;DP=43;Dels=0.00;FS=69.129;HaplotypeScore=1.9025;MLEAC=1;MLEAF=0.500;MQ=24.87;MQ0=1;MQRankSum=-1.207;QD=3.47;ReadPosRankSum=-2.490;SB=-8.700e+01	GT:AD:DP:GQ:PL	0/1:21,22:43:99:179,0,157
chrI	1927	.	G	A	86.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=39;Dels=0.00;FS=42.531;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=2;MQRankSum=-1.173;QD=2.21;ReadPosRankSum=-2.057;SB=-8.875e+01	GT:AD:DP:GQ:PL	0/1:21,18:39:99:116,0,158
chrI	2029	.	T	C	642	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.3238;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=2;QD=14.93;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:78:675,78,0
chrI	2068	.	C	A	466.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.148;DP=95;Dels=0.00;FS=8.345;HaplotypeScore=32.0567;MLEAC=1;MLEAF=0.500;MQ=26.03;MQ0=1;MQRankSum=0.921;QD=4.91;ReadPosRankSum=1.121;SB=-2.800e+02	GT:AD:DP:GQ:PL	0/1:44,51:95:99:496,0,513
chrI	2134	.	A	G	487.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.312;DP=200;Dels=0.00;FS=2.926;HaplotypeScore=16.9972;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=18;MQRankSum=-0.033;QD=2.44;ReadPosRankSum=3.629;SB=-7.101e+01	GT:AD:DP:GQ:PL	0/1:120,67:200:99:517,0,1357
chrI	2137	.	G	A	458.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.695;DP=202;Dels=0.00;FS=3.435;HaplotypeScore=66.4682;MLEAC=1;MLEAF=0.500;MQ=28.57;MQ0=18;MQRankSum=-1.084;QD=2.27;ReadPosRankSum=2.426;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:135,67:202:99:488,0,1439
chrI	2146	.	G	A	971.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;DP=212;Dels=0.00;FS=17.617;HaplotypeScore=57.5178;MLEAC=1;MLEAF=0.500;MQ=29.61;MQ0=18;MQRankSum=-5.350;QD=4.58;ReadPosRankSum=0.931;SB=-2.470e+02	GT:AD:DP:GQ:PL	0/1:83,129:212:99:1001,0,1030
chrI	2194	.	T	A	842.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.390;DP=200;Dels=0.00;FS=44.305;HaplotypeScore=22.5545;MLEAC=1;MLEAF=0.500;MQ=33.61;MQ0=10;MQRankSum=-0.923;QD=4.21;ReadPosRankSum=0.519;SB=-3.400e+02	GT:AD:DP:GQ:PL	0/1:108,92:200:99:872,0,1272
chrI	2272	.	C	T	69.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;DP=18;Dels=0.00;FS=6.039;HaplotypeScore=6.1224;MLEAC=1;MLEAF=0.500;MQ=30.58;MQ0=0;MQRankSum=1.479;QD=3.83;ReadPosRankSum=-2.070;SB=-4.701e+01	GT:AD:DP:GQ:PL	0/1:5,13:18:68:99,0,68
chrI	2310	.	A	G	64.51	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=16.13;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:12:97,12,0
chrI	2323	.	C	T	64.51	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=16.13;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:12:97,12,0
chrI	2331	.	A	C	60.51	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=15.13;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:12:93,12,0
chrI	2340	.	T	C	61.51	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.38;MQ0=0;QD=15.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:12:94,12,0
chrI	2371	.	T	A	23.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=0;MQRankSum=-0.742;QD=3.30;ReadPosRankSum=-0.742;SB=-2.396e+01	GT:AD:DP:GQ:PL	0/1:1,6:7:17:53,0,17
chrI	2406	.	A	C	272	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=0;QD=13.60;SB=-9.201e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:39:305,39,0
chrI	2418	.	G	A	161.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;DP=27;Dels=0.00;FS=8.368;HaplotypeScore=6.4307;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=1;MQRankSum=-0.943;QD=5.96;ReadPosRankSum=0.822;SB=-1.400e+02	GT:AD:DP:GQ:PL	0/1:6,21:27:76:191,0,76
chrI	2419	.	T	C	156.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.122;DP=29;Dels=0.00;FS=1.983;HaplotypeScore=7.4041;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=1;MQRankSum=-1.539;QD=5.38;ReadPosRankSum=1.273;SB=-1.380e+02	GT:AD:DP:GQ:PL	0/1:7,22:29:80:186,0,80
chrI	2435	.	C	T	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.882;DP=45;Dels=0.00;FS=8.033;HaplotypeScore=3.3394;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=1;MQRankSum=0.120;QD=0.25;ReadPosRankSum=2.308;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,6:45:41:41,0,468
chrI	2477	.	G	A	171.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;DP=42;Dels=0.00;FS=17.431;HaplotypeScore=14.2278;MLEAC=1;MLEAF=0.500;MQ=29.93;MQ0=1;MQRankSum=1.064;QD=4.07;ReadPosRankSum=2.745;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:23,19:42:99:201,0,291
chrI	2478	.	G	C	145.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DP=42;Dels=0.00;FS=17.431;HaplotypeScore=14.2278;MLEAC=1;MLEAF=0.500;MQ=29.93;MQ0=1;MQRankSum=1.405;QD=3.45;ReadPosRankSum=2.561;SB=-1.501e+01	GT:AD:DP:GQ:PL	0/1:23,19:42:99:175,0,298
chrI	2480	.	A	G	157.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.271;DP=41;Dels=0.00;FS=14.376;HaplotypeScore=14.2278;MLEAC=1;MLEAF=0.500;MQ=29.04;MQ0=1;MQRankSum=2.195;QD=3.83;ReadPosRankSum=2.591;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:23,18:41:99:187,0,279
chrI	2482	.	G	T	116.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;DP=43;Dels=0.00;FS=59.011;HaplotypeScore=15.2067;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=1;MQRankSum=-0.109;QD=2.70;ReadPosRankSum=0.925;SB=0.048	GT:AD:DP:GQ:PL	0/1:30,13:43:99:146,0,395
chrI	2485	.	A	T	200.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;DP=43;Dels=0.00;FS=26.202;HaplotypeScore=15.2067;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=1;MQRankSum=-0.202;QD=4.65;ReadPosRankSum=-0.910;SB=-7.387e+01	GT:AD:DP:GQ:PL	0/1:24,19:43:99:230,0,235
chrI	2512	.	A	G	121.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DP=46;Dels=0.00;FS=26.290;HaplotypeScore=19.9006;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=0.351;QD=2.63;ReadPosRankSum=0.680;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:31,15:46:99:151,0,236
chrI	2523	.	C	G	50.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;DP=38;Dels=0.00;FS=34.037;HaplotypeScore=22.3208;MLEAC=1;MLEAF=0.500;MQ=27.00;MQ0=1;MQRankSum=-0.259;QD=1.32;ReadPosRankSum=1.880;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:19,16:38:80:80,0,231
chrI	2524	.	T	C	213.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.116;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=27.8698;MLEAC=1;MLEAF=0.500;MQ=25.52;MQ0=1;MQRankSum=1.669;QD=6.26;ReadPosRankSum=0.501;SB=-1.680e+02	GT:AD:DP:GQ:PL	0/1:6,25:33:45:243,0,45
chrI	2526	.	T	C	51.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;DP=32;Dels=0.00;FS=40.030;HaplotypeScore=20.5133;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=1;MQRankSum=1.052;QD=1.59;ReadPosRankSum=0.814;SB=-6.246e-03	GT:AD:DP:GQ:PL	0/1:15,17:32:81:81,0,192
chrI	2532	.	T	C	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=20.5133;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=1;MQRankSum=-2.024;QD=0.61;ReadPosRankSum=0.934;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,5:33:50:50,0,214
chrI	2533	.	G	T	32.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;DP=32;Dels=0.00;FS=46.298;HaplotypeScore=24.4131;MLEAC=1;MLEAF=0.500;MQ=24.67;MQ0=1;MQRankSum=1.241;QD=1.00;ReadPosRankSum=-0.880;SB=1.45	GT:AD:DP:GQ:PL	0/1:24,8:32:62:62,0,158
chrI	2535	.	C	A	285	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=30.1053;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=8.91;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:39:318,39,0
chrI	2536	.	A	G	246	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=17.5730;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;MQRankSum=-1.174;QD=7.69;ReadPosRankSum=1.621;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:2,30:32:36:279,36,0
chrI	2542	.	T	G	108.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;DP=40;Dels=0.00;FS=45.825;HaplotypeScore=15.6218;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=1;MQRankSum=-0.214;QD=2.70;ReadPosRankSum=0.243;SB=-5.101e+01	GT:AD:DP:GQ:PL	0/1:24,16:40:99:138,0,168
chrI	2543	.	T	C	13.22	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=10.7366;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=1;MQRankSum=-2.331;QD=0.33;ReadPosRankSum=1.911;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,5:40:43:43,0,263
chrI	2611	.	G	A	76.51	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.84;MQ0=1;QD=3.64;SB=-1.865e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:12:109,12,0
chrI	2654	.	C	T	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.898;DP=10;Dels=0.00;FS=16.532;HaplotypeScore=6.9229;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;MQRankSum=0.898;QD=1.78;ReadPosRankSum=-0.898;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:2,8:10:6:49,6,0
chrI	2679	.	A	G	66.51	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=4.16;SB=-5.224e-01	GT:AD:DP:GQ:PL	1/1:0,15:16:12:99,12,0
chrI	2706	.	A	G	221	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=8.84;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:30:254,30,0
chrI	2748	.	A	T	343.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.839;DP=31;Dels=0.00;FS=6.463;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;MQRankSum=-0.280;QD=11.07;ReadPosRankSum=1.621;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:24:376,24,0
chrI	2790	.	C	A	203.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;QD=8.46;SB=-2.402e+01	GT:AD:DP:GQ:PL	1/1:0,22:24:27:236,27,0
chrI	2796	.	G	A	164.54	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;DP=26;Dels=0.00;FS=17.337;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;MQRankSum=-0.048;QD=6.33;ReadPosRankSum=2.261;SB=-2.155e+01	GT:AD:DP:GQ:PL	1/1:2,24:26:2:194,2,0
chrI	2797	.	A	G	166.45	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.134;DP=28;Dels=0.00;FS=14.014;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;MQRankSum=1.115;QD=5.94;ReadPosRankSum=2.096;SB=-6.146e+01	GT:AD:DP:GQ:PL	1/1:2,26:28:7:198,7,0
chrI	2823	.	A	G	271	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;QD=6.45;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:36:304,36,0
chrI	2825	.	G	C	279	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;QD=6.49;SB=-1.780e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:36:312,36,0
chrI	2891	.	G	T	932	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=14.34;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:965,111,0
chrI	2902	.	G	A	990	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=15.97;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1023,117,0
chrI	2970	.	T	C	649	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=17.54;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:682,81,0
chrI	3049	.	A	T	479	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=11.40;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:60:512,60,0
chrI	3056	.	C	A	550	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=13.10;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:66:583,66,0
chrI	3141	.	C	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=21.14;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1851,213,0
chrI	3187	.	T	C	1883	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.02;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1916,225,0
chrI	3279	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.90;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1028,117,0
chrI	3311	.	C	G	706	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.65;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:739,87,0
chrI	3313	.	A	C	670	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.18;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:703,84,0
chrI	3328	.	T	C	673	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=14.02;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:706,84,0
chrI	3389	.	C	T	1154	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.92;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1187,138,0
chrI	3462	.	A	C	1581	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.27;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1614,189,0
chrI	3518	.	G	A	882	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=16.33;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:915,105,0
chrI	3522	.	A	C	797	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=15.04;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:830,99,0
chrI	3620	.	G	A	1662	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.87;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1695,195,0
chrI	3785	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=22.67;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1597,183,0
chrI	3942	.	G	A	1179	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=16.61;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1212,144,0
chrI	3990	.	G	A	1628	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.71;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1661,189,0
chrI	4022	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.13;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1301,147,0
chrI	4067	.	A	G	1492	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.61;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1525,180,0
chrI	4119	.	G	A	1757	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.30;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1790,210,0
chrI	4138	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.195;HaplotypeScore=70.4602;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.289;QD=18.16;ReadPosRankSum=1.696;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1795,210,0
chrI	4213	.	A	G	1222	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=12.0751;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.46;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1255,150,0
chrI	4324	.	G	A	1267	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.12;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1300,150,0
chrI	4508	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.56;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1350,156,0
chrI	4597	.	G	C	876	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.4436;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=15.37;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:909,108,0
chrI	4696	.	G	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=14.5373;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.68;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1135,129,0
chrI	4738	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.72;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1177,141,0
chrI	4769	.	C	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.70;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1052,126,0
chrI	4774	.	A	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=16.97;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1102,132,0
chrI	4818	.	C	T	1189	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=16.29;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1222,138,0
chrI	4831	.	A	T	1306	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.18;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1339,153,0
chrI	4859	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.33;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1029,117,0
chrI	4907	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.00;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1087,120,0
chrI	4993	.	C	T	1056	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.247;QD=18.53;ReadPosRankSum=-0.619;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1089,123,0
chrI	5020	.	C	T	1384	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=60.91;MQ0=0;QD=17.52;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1417,162,0
chrI	5218	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=21.17;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1155,132,0
chrI	5221	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=19.53;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1107,129,0
chrI	5237	.	C	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.76;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1041,120,0
chrI	5446	.	A	T	1932	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=98;Dels=0.00;FS=3.291;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.552;QD=19.71;ReadPosRankSum=1.696;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1965,225,0
chrI	5569	.	G	A	1152	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=16.46;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1185,141,0
chrI	5572	.	G	A	1285	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=18.10;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1318,153,0
chrI	5576	.	G	C	1316	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=18.28;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1349,159,0
chrI	5582	.	G	A	1380	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=17.92;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1413,162,0
chrI	5627	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3148;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-1.689;QD=16.83;ReadPosRankSum=1.689;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1396,162,0
chrI	5763	.	T	C	1684	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.05;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1717,201,0
chrI	5811	.	T	C	1373	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.038;DP=83;Dels=0.01;FS=6.185;HaplotypeScore=9.2020;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=-0.213;QD=16.54;ReadPosRankSum=2.513;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:3,78:82:99:1406,147,0
chrI	5814	.	C	T	1506	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.37;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1539,177,0
chrI	5889	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.82;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1553,174,0
chrI	6001	.	A	G	1048	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.369;HaplotypeScore=52.2890;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-1.237;QD=16.63;ReadPosRankSum=1.567;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1081,129,0
chrI	6031	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=14.25;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1002,120,0
chrI	6059	.	A	T	948	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=12.2266;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=12.47;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:981,120,0
chrI	6093	.	C	T	943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.027;DP=79;Dels=0.00;FS=2.556;HaplotypeScore=11.8705;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=1.923;QD=11.94;ReadPosRankSum=1.559;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:3,75:79:99:976,111,0
chrI	6289	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=89;Dels=0.00;FS=3.832;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.179;QD=19.74;ReadPosRankSum=1.653;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,86:89:99:1790,210,0
chrI	6356	.	A	C	1515	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=20.20;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1548,183,0
chrI	6365	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.41;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1482,171,0
chrI	6370	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=15.90;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1162,138,0
chrI	6437	.	C	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=19.00;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1268,147,0
chrI	6645	.	G	A	886	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=17.72;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:99:919,111,0
chrI	6673	.	T	C	782	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=15.04;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,51:52:93:815,93,0
chrI	6721	.	T	C	301	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=12.04;SB=-7.612e-03	GT:AD:DP:GQ:PL	1/1:1,24:25:39:334,39,0
chrI	6722	.	A	T	324	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=12.96;SB=-7.610e-03	GT:AD:DP:GQ:PL	1/1:1,24:25:39:357,39,0
chrI	6730	.	G	T	116.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=5.28;SB=-1.415e-01	GT:AD:DP:GQ:PL	1/1:1,21:22:18:149,18,0
chrI	6735	.	C	T	70.51	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=4.70;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:12:103,12,0
chrI	6785	.	A	G	68.51	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.28;SB=-1.025e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:12:101,12,0
chrI	6796	.	T	C	96.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.42;SB=-1.293e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:15:129,15,0
chrI	6798	.	T	C	93.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.22;SB=-1.293e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:15:126,15,0
chrI	6806	.	A	T	99.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.84;SB=-1.603e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:15:132,15,0
chrI	6827	.	G	A	100.26	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=6.27;SB=-1.073e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:15:133,15,0
chrI	6837	.	A	G	118.13	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=6.95;SB=-4.914e+01	GT:AD:DP:GQ:PL	1/1:0,16:17:18:151,18,0
chrI	6972	.	A	G	285	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,13:13:36:318,36,0
chrI	7048	.	A	G	452	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=18.83;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:57:485,57,0
chrI	7126	.	G	T	670	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;QD=11.55;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:81:703,81,0
chrI	7129	.	A	T	540	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=8.85;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:66:573,66,0
chrI	7139	.	T	A	645	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=9.63;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:78:678,78,0
chrI	7268	.	G	T	846	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.00;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:879,99,0
chrI	7282	.	G	C	826	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.20;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:859,99,0
chrI	7295	.	A	G	895	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.90;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:928,111,0
chrI	7403	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=20.92;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1309,153,0
chrI	7416	.	G	C	1281	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=19.12;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1314,156,0
chrI	7418	.	A	G	1285	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=18.62;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1318,156,0
chrI	7556	.	T	C	1213	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.28;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1246,144,0
chrI	7729	.	T	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.37;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1064,129,0
chrI	8036	.	G	A	884	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=16.68;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:917,102,0
chrI	8083	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.2229;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=17.97;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1111,126,0
chrI	8095	.	T	G	896	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=16.00;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:929,111,0
chrI	8321	.	T	G	1131	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.34;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1164,138,0
chrI	8387	.	G	T	959	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.44;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:992,114,0
chrI	8425	.	G	A	688	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.11;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:721,81,0
chrI	8464	.	C	T	840	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=21.00;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:873,99,0
chrI	8563	.	G	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.21;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1518,171,0
chrI	8570	.	C	G	1242	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.26;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1275,147,0
chrI	8639	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.40;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1376,162,0
chrI	8776	.	C	G	2045	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.66;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2078,246,0
chrI	8811	.	G	C	2329	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.61;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2362,285,0
chrI	8828	.	A	C	2536	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.36;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2569,297,0
chrI	8899	.	C	A	1574	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.74;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1607,183,0
chrI	8902	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.36;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1491,180,0
chrI	8912	.	A	G	1416	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.88;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1449,174,0
chrI	8939	.	C	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.11;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1409,165,0
chrI	9053	.	T	A	38.97	filter	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=0.32;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:9:71,9,0
chrI	9064	.	A	G	2828	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.73;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,151:151:99:2861,333,0
chrI	9086	.	C	T	2905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;DP=136;Dels=0.00;FS=6.021;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.535;QD=21.36;ReadPosRankSum=-0.153;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,135:136:99:2938,316,0
chrI	9146	.	A	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.90;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:1948,228,0
chrI	9180	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.66;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1468,171,0
chrI	9350	.	G	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.31;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1483,168,0
chrI	9422	.	A	C	1054	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=17.28;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1087,129,0
chrI	9430	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=17.72;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1185,135,0
chrI	9495	.	C	G	989	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.05;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:58:99:1022,117,0
chrI	9531	.	C	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.06;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1159,135,0
chrI	9538	.	T	G	1129	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=16.36;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1162,138,0
chrI	9910	.	G	A	2428	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.97;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2461,282,0
chrI	10664	.	T	C	1465	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1498,174,0
chrI	11045	.	A	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.84;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1278,153,0
chrI	11107	.	G	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.67;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1550,174,0
chrI	11370	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.93;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1906,231,0
chrI	11447	.	A	G	2363	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.55;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,111:115:99:2396,276,0
chrI	11469	.	G	A	2238	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.9047;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=17.35;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2271,261,0
chrI	11504	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=14.63;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1511,177,0
chrI	11561	.	G	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=14.53;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1108,129,0
chrI	11601	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9596;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=17.81;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1743,207,0
chrI	11676	.	A	T	1708	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.08;MQ0=0;QD=20.58;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1741,201,0
chrI	11684	.	T	C	1551	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.10;MQ0=0;QD=20.14;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1584,186,0
chrI	11685	.	T	C	1460	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.715;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;MQRankSum=1.282;QD=18.96;ReadPosRankSum=1.687;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1493,183,0
chrI	11732	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=1;QD=18.15;SB=-1.210e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1322,153,0
chrI	11734	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=1;QD=17.35;SB=-7.301e+01	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1213,141,0
chrI	11750	.	T	C	970	filter	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=4;QD=14.26;SB=-9.701e+01	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1003,117,0
chrI	11835	.	A	G	87.26	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.06;MQ0=0;QD=2.57;SB=-2.707e-01	GT:AD:DP:GQ:PL	1/1:0,34:34:15:120,15,0
chrI	11852	.	T	G	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.31;MQ0=0;QD=0.59;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,30:30:6:49,6,0
chrI	11913	.	T	C	87.26	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=0;QD=7.27;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,12:12:15:120,15,0
chrI	11925	.	T	A	156.03	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.42;MQ0=0;QD=8.21;SB=-3.228e-02	GT:AD:DP:GQ:PL	1/1:0,19:19:24:189,24,0
chrI	11969	.	C	G	404	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=0;QD=10.36;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:54:437,54,0
chrI	11997	.	T	A	520	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=3;QD=10.40;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,50:50:66:553,66,0
chrI	12059	.	C	T	354	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=23.92;MQ0=5;QD=7.87;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:5,39:45:48:387,48,0
chrI	12118	.	C	T	58.51	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.36;MQ0=1;QD=4.50;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:12:91,12,0
chrI	12150	.	C	T	12.99	LowQual;filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.84;MQ0=3;QD=1.08;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,12:12:6:44,6,0
chrI	12361	.	G	A	414	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.103;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=4;MQRankSum=-0.946;QD=15.92;ReadPosRankSum=0.946;SB=2.089e-03	GT:AD:DP:GQ:PL	1/1:1,25:26:51:447,51,0
chrI	12363	.	A	G	342	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.520;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=5;MQRankSum=-1.214;QD=13.68;ReadPosRankSum=0.867;SB=0.021	GT:AD:DP:GQ:PL	1/1:1,23:25:45:375,45,0
chrI	12396	.	T	C	145.06	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.20;MQ0=9;QD=7.25;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:21:178,21,0
chrI	12498	.	A	T	258.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DP=80;Dels=0.00;FS=13.160;HaplotypeScore=12.8544;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=7;MQRankSum=2.615;QD=3.23;ReadPosRankSum=-2.297;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:35,45:80:99:288,0,195
chrI	12524	.	T	A	262.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DP=84;Dels=0.00;FS=4.699;HaplotypeScore=5.2862;MLEAC=1;MLEAF=0.500;MQ=32.98;MQ0=2;MQRankSum=-0.392;QD=3.12;ReadPosRankSum=-0.562;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:42,41:84:99:292,0,362
chrI	12566	.	C	T	601	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5135;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=9.85;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:61:78:634,78,0
chrI	12570	.	C	T	538	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;QD=10.98;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,49:49:72:571,72,0
chrI	12571	.	G	A	300.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=0;MQRankSum=2.758;QD=6.12;ReadPosRankSum=1.965;SB=-2.684e+00	GT:AD:DP:GQ:PL	0/1:5,44:49:46:330,0,46
chrI	12594	.	A	T	72.51	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.9649;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=1;QD=3.30;SB=-2.852e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:12:105,12,0
chrI	12619	.	G	A	31.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.510;DP=32;Dels=0.00;FS=10.965;HaplotypeScore=3.5456;MLEAC=1;MLEAF=0.500;MQ=26.02;MQ0=2;MQRankSum=2.291;QD=0.97;ReadPosRankSum=1.986;SB=-6.351e-03	GT:AD:DP:GQ:PL	0/1:16,15:32:57:61,0,57
chrI	12620	.	T	C	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;DP=34;Dels=0.00;FS=6.576;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=2;MQRankSum=2.619;QD=0.68;ReadPosRankSum=2.393;SB=-6.382e-03	GT:AD:DP:GQ:PL	0/1:18,16:34:53:53,0,78
chrI	12625	.	G	A	78.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;DP=37;Dels=0.00;FS=6.488;HaplotypeScore=7.3091;MLEAC=1;MLEAF=0.500;MQ=24.96;MQ0=2;MQRankSum=-2.540;QD=2.11;ReadPosRankSum=-3.224;SB=-6.604e+01	GT:AD:DP:GQ:PL	0/1:16,20:37:51:108,0,51
chrI	12668	.	T	C	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.4292;MLEAC=1;MLEAF=0.500;MQ=30.74;MQ0=2;MQRankSum=-1.284;QD=0.28;ReadPosRankSum=1.046;SB=-4.301e+01	GT:AD:DP:GQ:PL	0/1:72,13:92:56:56,0,618
chrI	12673	.	G	A	853.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;DP=91;Dels=0.00;FS=2.513;HaplotypeScore=7.6898;MLEAC=1;MLEAF=0.500;MQ=30.70;MQ0=2;MQRankSum=1.459;QD=9.37;ReadPosRankSum=-0.637;SB=-4.750e+02	GT:AD:DP:GQ:PL	0/1:14,77:91:45:883,0,45
chrI	12690	.	A	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=2;QD=14.23;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1257,147,0
chrI	12715	.	G	A	1052.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DP=124;Dels=0.01;FS=0.809;HaplotypeScore=27.4497;MLEAC=1;MLEAF=0.500;MQ=35.08;MQ0=1;MQRankSum=-0.922;QD=8.48;ReadPosRankSum=3.954;SB=-5.670e+02	GT:AD:DP:GQ:PL	0/1:28,95:123:99:1082,0,125
chrI	12721	.	G	A	339.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.736;DP=136;Dels=0.00;FS=0.710;HaplotypeScore=36.7548;MLEAC=1;MLEAF=0.500;MQ=36.78;MQ0=1;MQRankSum=1.082;QD=2.49;ReadPosRankSum=-3.988;SB=-2.370e+02	GT:AD:DP:GQ:PL	0/1:93,41:136:99:369,0,1121
chrI	12753	.	A	G	170.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DP=119;Dels=0.00;FS=9.693;HaplotypeScore=15.7245;MLEAC=1;MLEAF=0.500;MQ=37.44;MQ0=1;MQRankSum=-1.471;QD=1.43;ReadPosRankSum=-2.564;SB=-1.710e+02	GT:AD:DP:GQ:PL	0/1:85,34:119:99:200,0,1058
chrI	12763	.	G	A	1061.11	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;DP=115;Dels=0.00;FS=2.990;HaplotypeScore=32.5795;MLEAC=1;MLEAF=0.500;MQ=38.33;MQ0=1;MQRankSum=3.712;QD=9.23;ReadPosRankSum=4.212;SB=-6.241e+02	GT:AD:DP:GQ:PL	0/1:25,90:115:13:1091,0,13
chrI	12764	.	T	C	1139	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.544;DP=116;Dels=0.00;FS=6.865;HaplotypeScore=23.7080;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=1;MQRankSum=3.175;QD=9.82;ReadPosRankSum=3.542;SB=-6.654e+02	GT:AD:DP:GQ:PL	1/1:19,91:116:35:1172,35,0
chrI	12772	.	A	G	99.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;DP=121;Dels=0.00;FS=40.931;HaplotypeScore=94.4620;MLEAC=1;MLEAF=0.500;MQ=38.75;MQ0=1;MQRankSum=2.113;QD=0.82;ReadPosRankSum=-2.974;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:99,22:121:99:129,0,1053
chrI	12777	.	T	C	30.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;DP=123;Dels=0.00;FS=12.790;HaplotypeScore=44.8082;MLEAC=1;MLEAF=0.500;MQ=39.30;MQ0=1;MQRankSum=-0.088;QD=0.24;ReadPosRankSum=4.204;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:95,28:123:60:60,0,1196
chrI	12798	.	C	T	740.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.799;DP=116;Dels=0.00;FS=68.090;HaplotypeScore=16.3665;MLEAC=1;MLEAF=0.500;MQ=41.02;MQ0=0;MQRankSum=3.281;QD=6.38;ReadPosRankSum=4.970;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,50:116:99:770,0,492
chrI	13013	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.154;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=19.9511;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;MQRankSum=0.142;QD=20.72;ReadPosRankSum=1.519;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1297,147,0
chrI	13239	.	G	A	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=0.87;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:24:6:52,6,0
chrI	13246	.	C	G	17.84	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=0.71;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,25:25:6:49,6,0
chrI	13251	.	A	G	18.82	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.682;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;MQRankSum=0.982;QD=0.70;ReadPosRankSum=0.080;SB=1.24	GT:AD:DP:GQ:PL	1/1:19,8:27:6:50,6,0
chrI	13252	.	G	A	20.80	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=0;QD=0.77;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,27:27:6:52,6,0
chrI	13260	.	A	G	91.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.5065;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=0.975;QD=2.77;ReadPosRankSum=1.625;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:1,31:33:15:124,15,0
chrI	13263	.	G	A	122.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.6119;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=4.07;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,30:30:18:155,18,0
chrI	13269	.	G	A	157.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.973;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.6119;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;MQRankSum=0.217;QD=5.07;ReadPosRankSum=-1.245;SB=2.94	GT:AD:DP:GQ:PL	1/1:15,16:31:21:190,21,0
chrI	13284	.	A	G	224	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=6.22;SB=-1.520e-02	GT:AD:DP:GQ:PL	1/1:0,36:36:30:257,30,0
chrI	13287	.	A	G	244	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.815;QD=7.18;ReadPosRankSum=-0.408;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:1,33:34:33:277,33,0
chrI	13290	.	G	A	229	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.74;SB=-1.520e-02	GT:AD:DP:GQ:PL	1/1:0,33:34:30:262,30,0
chrI	13308	.	C	T	291	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.39;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:36:324,36,0
chrI	13311	.	A	T	284	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.52;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:36:317,36,0
chrI	13314	.	A	G	266	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.85;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:36:299,36,0
chrI	13317	.	A	T	285	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.40;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:36:318,36,0
chrI	13320	.	C	A	284	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.36;SB=-8.698e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:36:317,36,0
chrI	13323	.	A	G	273	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.41;SB=-8.698e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:36:306,36,0
chrI	22669	.	A	G	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=1.06;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:0,15:15:6:47,6,0
chrI	22700	.	C	A	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=0;QD=0.68;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,21:22:6:46,6,0
chrI	22702	.	C	T	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=0.69;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,23:23:6:47,6,0
chrI	23346	.	T	C	74.51	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.11;MQ0=7;QD=4.66;SB=-2.555e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:12:107,12,0
chrI	23536	.	G	A	71.51	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.39;MQ0=9;QD=4.21;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,17:17:12:104,12,0
chrI	24431	.	A	G	118.13	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.81;MQ0=8;QD=7.88;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:18:151,18,0
chrI	24921	.	C	T	14.24	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=3;MQRankSum=2.003;QD=1.02;ReadPosRankSum=-2.239;SB=0.033	GT:AD:DP:GQ:PL	0/1:5,9:14:15:44,0,15
chrI	24925	.	T	G	12.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=3;MQRankSum=2.003;QD=0.88;ReadPosRankSum=-2.239;SB=0.033	GT:AD:DP:GQ:PL	0/1:5,9:14:15:42,0,15
chrI	24931	.	G	C	12.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.23;MQ0=1;MQRankSum=2.003;QD=1.03;ReadPosRankSum=-2.239;SB=0.033	GT:AD:DP:GQ:PL	0/1:3,9:12:15:42,0,15
chrI	24934	.	G	A	14.24	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.9621;MLEAC=1;MLEAF=0.500;MQ=26.64;MQ0=0;MQRankSum=1.780;QD=0.84;ReadPosRankSum=1.684;SB=-7.465e-02	GT:AD:DP:GQ:PL	0/1:8,9:17:15:44,0,15
chrI	24951	.	A	T	107.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.9621;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=1;MQRankSum=1.582;QD=4.50;ReadPosRankSum=0.709;SB=-3.655e+00	GT:AD:DP:GQ:PL	0/1:2,22:24:3:137,0,3
chrI	24956	.	T	C	19.06	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.7508;MLEAC=1;MLEAF=0.500;MQ=26.24;MQ0=1;MQRankSum=-0.556;QD=0.76;ReadPosRankSum=-1.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:15,10:25:49:49,0,83
chrI	24977	.	C	T	53.14	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;DP=24;Dels=0.00;FS=8.846;HaplotypeScore=2.6823;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=1;MQRankSum=0.046;QD=2.21;ReadPosRankSum=1.050;SB=1.05	GT:AD:DP:GQ:PL	0/1:4,20:24:12:83,0,12
chrI	24982	.	G	A	81.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;DP=24;Dels=0.00;FS=8.846;HaplotypeScore=2.6823;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=1;MQRankSum=0.593;QD=3.39;ReadPosRankSum=0.593;SB=-1.890e+00	GT:AD:DP:GQ:PL	0/1:4,20:24:8:111,0,8
chrI	25418	.	T	C	67.51	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=7.50;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:100,12,0
chrI	25452	.	T	A	43.97	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=8.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,5:5:9:76,9,0
chrI	27522	.	C	T	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.07;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:0,11:11:6:54,6,0
chrI	27540	.	A	G	43.97	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.93;SB=-9.813e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:9:76,9,0
chrI	27558	.	G	A	191.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.30;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:0,23:23:27:224,27,0
chrI	27561	.	T	A	118.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.14;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,23:23:18:151,18,0
chrI	27563	.	C	T	204.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.87;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:0,23:23:27:237,27,0
chrI	27564	.	G	A	192.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.35;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:0,23:23:27:225,27,0
chrI	27579	.	A	G	139.06	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.79;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,24:24:21:172,21,0
chrI	27606	.	G	A	181.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.03;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,30:30:24:214,24,0
chrI	27609	.	T	G	148.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.29;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,28:28:21:181,21,0
chrI	27613	.	A	C	141.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.86;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,29:29:21:174,21,0
chrI	27618	.	T	C	118.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.368;QD=3.58;ReadPosRankSum=1.628;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:1,32:33:18:151,18,0
chrI	27621	.	A	G	187.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.67;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,33:33:24:220,24,0
chrI	27627	.	A	T	211.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.59;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,32:32:27:244,27,0
chrI	27630	.	A	G	194.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.26;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,31:31:27:227,27,0
chrI	27639	.	A	T	177.03	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=5.53;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,32:32:24:210,24,0
chrI	27684	.	A	C	37.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=1.81;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,21:21:9:70,9,0
chrI	27688	.	A	T	43.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=1.91;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,23:23:9:76,9,0
chrI	27693	.	G	C	16.85	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=0.80;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,21:21:6:48,6,0
chrI	27699	.	T	G	40.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=2.28;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,18:18:9:73,9,0
chrI	27701	.	A	T	43.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=2.44;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,18:18:9:76,9,0
chrI	27702	.	A	T	17.84	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=0.99;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,18:18:6:49,6,0
chrI	27703	.	C	G	42.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=2.39;SB=-9.817e-01	GT:AD:DP:GQ:PL	1/1:0,18:18:9:75,9,0
chrI	27759	.	C	T	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=1.49;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:0,10:10:6:46,6,0
chrI	27765	.	A	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=1.34;SB=-1.757e+00	GT:AD:DP:GQ:PL	1/1:0,9:9:6:43,6,0
chrI	27804	.	C	G	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=6.60;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,3:3:6:51,6,0
chrI	27840	.	A	G	120.13	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;QD=13.35;SB=-1.019e+02	GT:AD:DP:GQ:PL	1/1:0,9:9:18:153,18,0
chrI	27843	.	G	A	129.13	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.17;MQ0=0;QD=14.35;SB=-1.079e+02	GT:AD:DP:GQ:PL	1/1:0,9:9:18:162,18,0
chrI	27892	.	G	A	568	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=17.21;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:601,72,0
chrI	28027	.	G	C	1068	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=16.95;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1101,132,0
chrI	28057	.	A	G	627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=3.388;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;MQRankSum=-1.011;QD=13.06;ReadPosRankSum=1.660;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:81:660,81,0
chrI	28068	.	A	G	484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=38;Dels=0.00;FS=10.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;MQRankSum=0.033;QD=12.74;ReadPosRankSum=2.255;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:2,36:38:63:517,63,0
chrI	28077	.	G	A	406	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=11.28;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:54:439,54,0
chrI	28091	.	A	T	421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=39;Dels=0.00;FS=11.295;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;MQRankSum=0.223;QD=10.79;ReadPosRankSum=2.324;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:2,37:39:54:454,54,0
chrI	28113	.	G	A	279	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.62;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:36:312,36,0
chrI	28114	.	G	A	317	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.93;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:39:350,39,0
chrI	28117	.	G	C	288	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.29;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:39:321,39,0
chrI	28150	.	C	T	203.01	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.52;SB=-8.202e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:27:236,27,0
chrI	28167	.	A	T	174.03	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.69;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:0,25:26:24:207,24,0
chrI	28181	.	T	C	98.26	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=4.68;SB=-1.073e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:15:131,15,0
chrI	28185	.	T	A	120.13	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=6.01;SB=-1.051e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:18:153,18,0
chrI	28196	.	T	C	181.01	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;QD=9.05;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:27:214,27,0
chrI	28203	.	C	A	171.03	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=8.14;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:24:204,24,0
chrI	28227	.	T	C	294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=29;Dels=0.00;FS=11.064;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-2.471;QD=10.14;ReadPosRankSum=2.757;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:3,26:29:39:327,39,0
chrI	28230	.	T	C	326	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=10.52;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:42:359,42,0
chrI	28321	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.03;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1195,141,0
chrI	28352	.	C	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.79;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1384,159,0
chrI	28385	.	A	G	973	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.36;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1006,117,0
chrI	28517	.	A	G	785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=3.078;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;MQRankSum=1.645;QD=19.62;ReadPosRankSum=2.203;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:2,38:40:96:818,96,0
chrI	28529	.	T	C	643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=3.136;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=-0.743;QD=18.37;ReadPosRankSum=1.535;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:81:676,81,0
chrI	28666	.	A	G	970	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=71;Dels=0.00;FS=3.680;HaplotypeScore=5.7515;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;MQRankSum=1.188;QD=13.66;ReadPosRankSum=1.584;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1003,117,0
chrI	28673	.	A	T	1029	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=14.70;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1062,123,0
chrI	28684	.	A	G	976	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.01;FS=4.221;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.421;QD=13.01;ReadPosRankSum=1.685;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1009,120,0
chrI	28979	.	T	C	985	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=4.314;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.000;QD=18.24;ReadPosRankSum=1.668;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1018,120,0
chrI	29970	.	C	T	450	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=15.52;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:54:483,54,0
chrI	30004	.	T	C	395	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.17;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:51:428,51,0
chrI	30011	.	A	T	476	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.42;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:57:509,57,0
chrI	30018	.	G	A	490	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.41;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:60:523,60,0
chrI	30036	.	G	A	538	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.54;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:66:571,66,0
chrI	30044	.	A	T	428	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.59;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:54:461,54,0
chrI	30051	.	C	T	373	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.30;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:48:406,48,0
chrI	30055	.	C	T	422	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.07;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:51:455,51,0
chrI	30125	.	G	T	227	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=4.83;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:30:260,30,0
chrI	30153	.	G	A	303	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=8.19;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:39:336,39,0
chrI	30164	.	G	A	373	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.57;MQ0=0;QD=9.56;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:48:406,48,0
chrI	30190	.	A	G	521	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=15.79;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:66:554,66,0
chrI	30198	.	T	C	505	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=14.03;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:538,66,0
chrI	30202	.	C	T	476	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=14.42;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:63:509,63,0
chrI	30226	.	G	A	480	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=17.14;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:60:513,60,0
chrI	30335	.	C	T	838	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=20.95;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:99:871,105,0
chrI	30361	.	A	T	492	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.62;MQ0=0;QD=14.47;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:66:525,66,0
chrI	30371	.	C	A	427	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=12.94;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:60:460,60,0
chrI	30382	.	C	A	433	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=12.37;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:60:466,60,0
chrI	30388	.	G	A	239	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=8.54;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:0,28:28:33:272,33,0
chrI	30427	.	G	C	284	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=7.47;SB=-4.701e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:39:317,39,0
chrI	30435	.	G	A	401	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=8.72;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:51:434,51,0
chrI	30468	.	G	C	658	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=11.34;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:87:691,87,0
chrI	30478	.	C	T	658	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.61;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:84:691,84,0
chrI	30490	.	A	G	665	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=11.67;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:87:698,87,0
chrI	30522	.	A	G	959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;DP=62;Dels=0.00;FS=14.353;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;MQRankSum=0.129;QD=15.47;ReadPosRankSum=3.309;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:4,58:62:99:992,120,0
chrI	30585	.	T	A	870	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=17.76;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:903,108,0
chrI	30601	.	C	T	670	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=15.23;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:703,81,0
chrI	30605	.	C	T	671	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=14.28;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:704,84,0
chrI	30661	.	T	A	571	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=10.20;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:69:604,69,0
chrI	30662	.	T	G	515	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=9.36;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:66:548,66,0
chrI	30669	.	T	C	487	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;QD=8.40;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:63:520,63,0
chrI	30670	.	T	C	493	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=8.36;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:63:526,63,0
chrI	30713	.	T	G	563	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.4996;MLEAC=2;MLEAF=1.00;MQ=40.66;MQ0=0;QD=9.38;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:72:596,72,0
chrI	30747	.	A	C	800	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=14.04;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:96:833,96,0
chrI	30749	.	G	A	781	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=13.70;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:93:814,93,0
chrI	30817	.	T	C	737	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=15.0695;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=17.14;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:770,90,0
chrI	30832	.	C	G	652	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=15.90;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:78:685,78,0
chrI	30930	.	T	A	842	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=17.54;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:99:875,99,0
chrI	30987	.	T	G	612	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=20.40;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:78:645,78,0
chrI	31018	.	G	A	712	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=23.73;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:84:745,84,0
chrI	31107	.	C	A	388	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.48;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:48:421,48,0
chrI	31391	.	A	G	307	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:39:340,39,0
chrI	31550	.	A	T	636	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:669,78,0
chrI	31979	.	G	A	1227	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.4590;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.88;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1260,144,0
chrI	32139	.	G	A	930	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.37;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:963,111,0
chrI	32262	.	T	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.49;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1436,171,0
chrI	32511	.	C	T	761	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=15.85;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:794,93,0
chrI	32574	.	T	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.20;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1168,138,0
chrI	32595	.	T	C	1279	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.76;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1312,153,0
chrI	32652	.	A	C	1518	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.71;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1551,183,0
chrI	32776	.	C	T	1002	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=13.92;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1035,117,0
chrI	32989	.	G	A	1273	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=57.4427;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.72;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1306,147,0
chrI	33113	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.38;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1467,165,0
chrI	33140	.	G	A	1183	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=17.40;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1216,138,0
chrI	33145	.	G	A	1160	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.06;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1193,135,0
chrI	33147	.	G	T	1223	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.99;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1256,141,0
chrI	33237	.	G	A	1314	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.77;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1347,153,0
chrI	33268	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=17.74;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1346,159,0
chrI	33328	.	C	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6837;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.23;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1463,168,0
chrI	33347	.	T	A	1252	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=14.90;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1285,150,0
chrI	33348	.	G	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.25;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1482,171,0
chrI	33512	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.898;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.584;QD=22.11;ReadPosRankSum=1.584;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1581,189,0
chrI	33548	.	A	C	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=6.340;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.088;QD=19.33;ReadPosRankSum=2.380;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1386,159,0
chrI	33612	.	A	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.44;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1394,165,0
chrI	33690	.	G	A	1630	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.90;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1663,189,0
chrI	33864	.	G	C	1362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.270;QD=18.16;ReadPosRankSum=1.409;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1395,165,0
chrI	34084	.	G	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.37;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1133,135,0
chrI	34320	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1479;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.42;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1392,165,0
chrI	34509	.	C	T	1010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.680;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.096;QD=20.61;ReadPosRankSum=-1.379;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1043,120,0
chrI	34548	.	G	A	999	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=16.38;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1032,117,0
chrI	35051	.	C	T	484	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=15.61;SB=-1.830e+02	GT:AD:DP:GQ:PL	1/1:0,29:31:60:517,60,0
chrI	35059	.	G	A	411	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=8.1637;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.22;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:51:444,51,0
chrI	35070	.	C	T	383	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=13.68;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:48:416,48,0
chrI	35211	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.03;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1415,168,0
chrI	35337	.	A	T	622	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.77;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:75:655,75,0
chrI	35421	.	G	A	582	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=13.23;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:75:615,75,0
chrI	35565	.	A	G	989	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.48;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1022,120,0
chrI	35568	.	A	G	1095	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.95;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1128,129,0
chrI	35631	.	G	C	676	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=13.00;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:709,84,0
chrI	35751	.	T	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.51;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1223,141,0
chrI	35818	.	A	G	1012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.896;QD=17.45;ReadPosRankSum=1.613;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1045,123,0
chrI	36403	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=7.4850;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.588;QD=17.00;ReadPosRankSum=-1.492;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1257,150,0
chrI	36524	.	C	T	676	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.88;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:81:709,81,0
chrI	36547	.	G	A	471	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=16.82;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:57:504,57,0
chrI	36552	.	T	C	482	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=16.07;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:60:515,60,0
chrI	36898	.	C	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.3282;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.87;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1071,123,0
chrI	36940	.	C	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.45;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1158,135,0
chrI	37028	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1188,138,0
chrI	37419	.	G	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.39;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1130,129,0
chrI	37553	.	A	G	1771	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.08;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1804,216,0
chrI	37885	.	C	A	794	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=16.89;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:827,93,0
chrI	37893	.	C	T	750	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=15.00;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:93:783,93,0
chrI	37922	.	G	A	930	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.61;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:963,108,0
chrI	38120	.	A	T	1307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=5.971;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.047;QD=20.11;ReadPosRankSum=2.704;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:99:1340,153,0
chrI	38361	.	C	T	945	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.2996;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.18;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:978,114,0
chrI	38504	.	T	G	840	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=12.92;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:873,102,0
chrI	38508	.	G	T	866	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.59;MQ0=0;QD=13.97;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:899,102,0
chrI	38524	.	C	A	605	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=10.80;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:72:638,72,0
chrI	38533	.	T	C	604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;MQRankSum=-1.176;QD=10.79;ReadPosRankSum=1.670;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:75:637,75,0
chrI	38654	.	C	A	1710	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.43;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1743,204,0
chrI	38928	.	G	A	1195	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=17.32;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1228,141,0
chrI	38973	.	T	C	1262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.00;FS=8.644;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.015;QD=14.85;ReadPosRankSum=2.361;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:2,81:85:99:1295,150,0
chrI	39009	.	T	C	1983	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.2814;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.664;QD=16.25;ReadPosRankSum=1.530;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,119:122:99:2016,237,0
chrI	39162	.	C	G	2031	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.94;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2064,243,0
chrI	39388	.	G	A	1949	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=15.98;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:1982,228,0
chrI	39708	.	A	C	819	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.14;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:852,102,0
chrI	39723	.	T	C	880	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.95;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:913,108,0
chrI	39795	.	G	A	894	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=15.41;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:927,105,0
chrI	40222	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=17.44;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1184,144,0
chrI	40237	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=17.23;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1136,132,0
chrI	40345	.	C	G	901	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:934,108,0
chrI	40380	.	G	A	732	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=16.27;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:765,87,0
chrI	40668	.	G	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.05;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1591,183,0
chrI	40860	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.52;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1173,138,0
chrI	40866	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=5.411;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.308;QD=16.68;ReadPosRankSum=1.685;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1251,147,0
chrI	40914	.	C	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=17.31;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1556,183,0
chrI	41157	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.64;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1395,162,0
chrI	41184	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5984;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.77;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1135,132,0
chrI	41736	.	T	C	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=6.349;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-1.231;QD=13.26;ReadPosRankSum=2.398;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1293,153,0
chrI	41739	.	A	G	1273	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.172;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.448;QD=12.86;ReadPosRankSum=3.119;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:4,95:99:99:1306,153,0
chrI	41850	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=3.096;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.461;QD=18.75;ReadPosRankSum=1.664;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1008,117,0
chrI	41987	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=15.20;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1401,165,0
chrI	41993	.	G	A	1560	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=17.73;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1593,183,0
chrI	42115	.	T	C	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=0.411;QD=19.60;ReadPosRankSum=1.696;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,96:98:99:1954,234,0
chrI	42285	.	A	T	2401	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.25;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2434,276,0
chrI	42431	.	G	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.2364;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=15.32;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1320,159,0
chrI	42484	.	G	A	931	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=9.31;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:964,111,0
chrI	42633	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.32;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1482,171,0
chrI	44074	.	A	G	917	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.09;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:950,114,0
chrI	44384	.	A	G	775	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.53;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:96:808,96,0
chrI	44588	.	A	G	1209	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.15;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1242,147,0
chrI	44675	.	G	A	1026	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=18.32;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1059,126,0
chrI	44891	.	A	G	846	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.67;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:879,105,0
chrI	44935	.	C	A	724	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.05;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:757,87,0
chrI	45024	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=74.2461;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.515;QD=17.80;ReadPosRankSum=-1.358;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1386,143,0
chrI	45198	.	G	A	764	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=16.98;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:797,96,0
chrI	45431	.	G	A	588	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=13.67;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:621,75,0
chrI	45546	.	A	T	778	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.591;QD=15.88;ReadPosRankSum=1.662;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:96:811,96,0
chrI	45831	.	G	C	1941	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.06;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1974,237,0
chrI	46030	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=16.86;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1601,186,0
chrI	46375	.	A	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.17;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1260,144,0
chrI	46723	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.73;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1484,174,0
chrI	46837	.	G	A	593	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=16.03;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:626,72,0
chrI	46846	.	T	C	681	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=17.02;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:714,84,0
chrI	46894	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.26;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1001,117,0
chrI	46912	.	T	G	1018	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.18;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1051,126,0
chrI	46966	.	T	C	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9398;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.679;QD=19.09;ReadPosRankSum=1.519;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1293,150,0
chrI	47015	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.48;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1163,132,0
chrI	47044	.	A	C	825	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.18;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:858,102,0
chrI	47206	.	A	G	667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.019;QD=19.62;ReadPosRankSum=1.631;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:84:700,84,0
chrI	47518	.	A	G	1298	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.94;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1331,162,0
chrI	47660	.	T	C	653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.328;QD=17.65;ReadPosRankSum=1.639;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:81:686,81,0
chrI	47690	.	T	C	852	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.85;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:885,105,0
chrI	47896	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.36;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1248,144,0
chrI	48115	.	G	C	406	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.62;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:51:439,51,0
chrI	48271	.	A	G	1594	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.98;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1627,189,0
chrI	48313	.	A	T	1861	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.6213;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.45;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1894,213,0
chrI	48493	.	C	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.40;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1253,144,0
chrI	48590	.	C	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.00;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1453,168,0
chrI	48622	.	C	G	890	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=14.59;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:923,108,0
chrI	48674	.	A	G	1191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=85;Dels=0.00;FS=2.799;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.420;QD=14.01;ReadPosRankSum=2.392;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1224,144,0
chrI	48751	.	T	C	761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-1.732;QD=10.42;ReadPosRankSum=1.635;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:93:794,93,0
chrI	48755	.	T	C	673	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-1.629;QD=10.04;ReadPosRankSum=1.629;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:84:706,84,0
chrI	48766	.	C	T	726	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=10.52;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:87:759,87,0
chrI	48890	.	C	T	1622	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.86;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1655,189,0
chrI	48908	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=15.80;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1423,162,0
chrI	49103	.	C	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.67;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1764,207,0
chrI	49199	.	T	C	1022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.6720;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-1.213;QD=17.03;ReadPosRankSum=1.559;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1055,110,0
chrI	49241	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.94;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1059,126,0
chrI	49403	.	C	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.9497;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.85;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1586,186,0
chrI	49548	.	T	C	1440	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.20;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1473,174,0
chrI	49589	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.06;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1486,171,0
chrI	49871	.	C	T	1908	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.30;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1941,222,0
chrI	50024	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.30;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1332,153,0
chrI	50204	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.82;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1381,162,0
chrI	50316	.	A	G	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.819;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.857;QD=19.89;ReadPosRankSum=1.618;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1863,219,0
chrI	50343	.	A	G	1568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=4.674;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.512;QD=17.82;ReadPosRankSum=1.693;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1601,186,0
chrI	50354	.	C	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.67;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1606,186,0
chrI	50384	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.93;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1489,171,0
chrI	50432	.	T	C	959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.447;QD=15.47;ReadPosRankSum=1.676;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:992,120,0
chrI	50456	.	G	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.41;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1130,126,0
chrI	50498	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.08;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1298,150,0
chrI	50660	.	T	A	1772	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.88;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1805,210,0
chrI	50663	.	C	T	1623	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=15.76;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,99:103:99:1656,192,0
chrI	50840	.	A	G	1195	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.84;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1228,147,0
chrI	51095	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.5014;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.11;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1162,135,0
chrI	51287	.	T	C	987	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.00;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1020,117,0
chrI	51321	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.39;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:93:767,93,0
chrI	51371	.	A	C	885	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.83;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:918,105,0
chrI	51434	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=4.616;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.606;QD=18.91;ReadPosRankSum=1.606;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1073,129,0
chrI	51478	.	T	C	953	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.33;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:986,117,0
chrI	51728	.	T	A	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.491;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.577;QD=18.97;ReadPosRankSum=1.694;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1759,207,0
chrI	51930	.	T	G	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.994;DP=41;Dels=0.00;FS=56.289;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=0.444;QD=0.76;ReadPosRankSum=-0.960;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:29,12:41:61:61,0,443
chrI	51951	.	T	G	940	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.2975;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.58;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:973,117,0
chrI	52164	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.4794;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.74;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1237,144,0
chrI	52613	.	G	A	406	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=15.04;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:51:439,51,0
chrI	52632	.	T	C	559	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.63;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:592,69,0
chrI	52635	.	T	C	584	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=18.84;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:72:617,72,0
chrI	52846	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.84;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1600,180,0
chrI	52849	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.26;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1574,186,0
chrI	52858	.	T	C	1357	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=19.11;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1390,165,0
chrI	52939	.	C	T	359	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.36;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:45:392,45,0
chrI	52946	.	T	A	318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-0.503;QD=10.26;ReadPosRankSum=1.398;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:42:351,42,0
chrI	52951	.	G	T	387	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=12.09;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:48:420,48,0
chrI	52984	.	A	G	302	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=9.44;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:39:335,39,0
chrI	52996	.	A	G	307	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=9.03;SB=-1.830e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:39:340,39,0
chrI	53146	.	T	G	1338	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.61;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1371,162,0
chrI	53167	.	A	G	1243	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=17.76;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1276,150,0
chrI	53266	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=20.20;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1427,162,0
chrI	53326	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.137;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.990;QD=21.81;ReadPosRankSum=1.633;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1560,183,0
chrI	53542	.	C	T	879	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.93;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:912,105,0
chrI	53836	.	A	G	1064	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.70;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1097,129,0
chrI	53843	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.39;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1073,123,0
chrI	53851	.	G	A	1042	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.66;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1075,120,0
chrI	53935	.	A	T	618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=34;Dels=0.00;FS=7.899;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.695;QD=18.18;ReadPosRankSum=2.232;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:2,32:34:75:651,75,0
chrI	54175	.	A	G	1532	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.90;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1565,186,0
chrI	54198	.	G	A	1752	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.68;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1785,201,0
chrI	54244	.	A	G	1310	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=6.734;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.735;QD=19.85;ReadPosRankSum=1.680;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1343,156,0
chrI	54319	.	T	C	908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.009;DP=56;Dels=0.00;FS=2.888;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.126;QD=16.21;ReadPosRankSum=2.362;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:941,111,0
chrI	54380	.	T	C	1974	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0992;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.516;QD=20.56;ReadPosRankSum=1.696;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2007,240,0
chrI	54478	.	G	A	1548	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=18.65;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1581,183,0
chrI	54481	.	T	C	1513	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=0.551;QD=17.19;ReadPosRankSum=1.535;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1546,183,0
chrI	54508	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=88;Dels=0.00;FS=7.032;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.920;QD=15.27;ReadPosRankSum=2.393;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:2,85:88:99:1377,162,0
chrI	54661	.	G	T	758	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=14.58;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:93:791,93,0
chrI	54679	.	C	T	743	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=15.16;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:93:776,93,0
chrI	54742	.	A	C	799	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=12.29;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:832,102,0
chrI	54784	.	A	G	1049	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=13.28;SB=-1.520e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1082,129,0
chrI	54806	.	T	C	1054	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=13.17;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1087,129,0
chrI	54820	.	T	C	1055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=73;Dels=0.00;FS=6.471;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-1.488;QD=14.45;ReadPosRankSum=1.683;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:99:1088,126,0
chrI	55145	.	C	T	1256	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.75;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1289,156,0
chrI	55171	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.81;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1243,147,0
chrI	55213	.	A	C	974	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=15.22;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1007,117,0
chrI	55256	.	A	G	993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.577;QD=18.39;ReadPosRankSum=1.668;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1026,123,0
chrI	55327	.	C	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.11;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1218,138,0
chrI	55508	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6113;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.22;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1408,162,0
chrI	55688	.	T	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.59;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1223,141,0
chrI	55793	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.165;QD=18.92;ReadPosRankSum=1.650;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1622,195,0
chrI	56007	.	A	G	1178	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.027;QD=18.70;ReadPosRankSum=1.622;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1211,141,0
chrI	56107	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=16.76;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1156,135,0
chrI	56144	.	T	G	930	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=17.22;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:963,114,0
chrI	56159	.	T	A	896	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.36;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:929,105,0
chrI	56475	.	A	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.1885;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.76;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1065,123,0
chrI	57206	.	A	C	911	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.22;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:944,114,0
chrI	57318	.	G	C	1010	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.36;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1043,123,0
chrI	59349	.	A	C	1286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=4.046;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.105;QD=19.19;ReadPosRankSum=1.680;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1319,159,0
chrI	59659	.	C	G	1106	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1139,135,0
chrI	59934	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.24;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1733,201,0
chrI	60003	.	G	C	729	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=14.58;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:90:762,90,0
chrI	60198	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.66;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1004,114,0
chrI	60267	.	G	C	1094	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1127,135,0
chrI	60417	.	C	T	1289	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.46;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1322,153,0
chrI	60774	.	T	C	1839	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.58;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1872,222,0
chrI	60915	.	C	T	1866	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3567;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.06;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1899,222,0
chrI	61451	.	G	A	1719	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.91;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1752,204,0
chrI	61585	.	C	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1626,189,0
chrI	61744	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.2563;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.529;QD=16.00;ReadPosRankSum=-1.492;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:1,71:74:99:1217,119,0
chrI	61768	.	G	A	1025	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=16.02;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1058,120,0
chrI	61990	.	T	C	1422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.220;QD=20.03;ReadPosRankSum=1.683;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1455,174,0
chrI	62053	.	G	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.73;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1213,138,0
chrI	62131	.	C	T	701	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.52;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:734,84,0
chrI	62134	.	T	C	640	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=14.88;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:81:673,81,0
chrI	62308	.	T	C	523	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=15.38;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:556,66,0
chrI	62361	.	T	C	500	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=12.20;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:63:533,63,0
chrI	62565	.	G	A	637	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=14.48;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:75:670,75,0
chrI	62654	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.18;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2045,234,0
chrI	62726	.	G	A	876	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.90;SB=-1.540e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:909,105,0
chrI	62950	.	C	T	1528	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.98;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1561,183,0
chrI	63025	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2993;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.24;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1649,198,0
chrI	63385	.	T	C	849	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=15.44;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:882,102,0
chrI	63520	.	T	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.95;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1374,156,0
chrI	63658	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.57;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1168,132,0
chrI	64094	.	C	T	953	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.33;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:986,111,0
chrI	64477	.	C	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.23;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1084,126,0
chrI	64663	.	A	G	1178	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=16.59;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1211,141,0
chrI	64676	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=17.00;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1342,150,0
chrI	64781	.	T	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3814;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.00;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1461,171,0
chrI	64907	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.72;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1238,141,0
chrI	65036	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.11;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1461,171,0
chrI	65488	.	C	T	1167	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.23;SB=-2.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1200,144,0
chrI	66003	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=67;Dels=0.00;FS=6.491;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=2.229;QD=16.52;ReadPosRankSum=2.340;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1140,138,0
chrI	66129	.	A	G	1342	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.45;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1375,162,0
chrI	67120	.	G	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.6178;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.74;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1298,147,0
chrI	67269	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.477;QD=16.99;ReadPosRankSum=1.682;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1205,144,0
chrI	67275	.	G	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.04;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1175,135,0
chrI	67476	.	C	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.31;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1168,135,0
chrI	67506	.	C	T	1300	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.33;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1333,150,0
chrI	67715	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.25;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1548,180,0
chrI	68312	.	G	C	570	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=14.62;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:603,72,0
chrI	68634	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=65;Dels=0.00;FS=6.796;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-2.070;QD=16.98;ReadPosRankSum=1.425;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1137,119,0
chrI	68725	.	G	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.21;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1185,141,0
chrI	68739	.	A	G	1191	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.52;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1224,141,0
chrI	68869	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.41;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1564,186,0
chrI	69112	.	T	C	776	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=14.11;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:96:809,96,0
chrI	69280	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.31;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1610,186,0
chrI	69403	.	C	T	899	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.35;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:932,108,0
chrI	69585	.	A	G	828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.732;QD=16.24;ReadPosRankSum=1.664;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:861,102,0
chrI	69603	.	T	C	830	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.27;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:863,102,0
chrI	69675	.	G	A	571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=47;Dels=0.00;FS=11.679;HaplotypeScore=2.8489;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=2.088;QD=12.15;ReadPosRankSum=3.618;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:6,41:47:78:604,78,0
chrI	69678	.	A	G	504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=47;Dels=0.04;FS=8.984;HaplotypeScore=2.8489;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=1.775;QD=10.72;ReadPosRankSum=2.931;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:4,41:45:69:537,69,0
chrI	69725	.	A	T	321	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.211;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=65.4395;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;MQRankSum=-0.211;QD=7.47;ReadPosRankSum=1.648;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:45:354,45,0
chrI	69767	.	G	A	363	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=9.81;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:45:396,45,0
chrI	69951	.	A	T	723	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.66;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:87:756,87,0
chrI	69981	.	T	C	854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.274;QD=21.90;ReadPosRankSum=1.641;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:99:887,102,0
chrI	70024	.	T	C	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.176;QD=18.46;ReadPosRankSum=1.609;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1067,129,0
chrI	70045	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=18.42;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1046,126,0
chrI	70071	.	C	T	955	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.05;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:988,114,0
chrI	70228	.	T	C	419	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=1;QD=8.22;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:54:452,54,0
chrI	70345	.	G	T	830	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.76;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:863,99,0
chrI	70461	.	C	T	881	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.58;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:914,108,0
chrI	70497	.	A	G	703	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.30;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:87:736,87,0
chrI	70621	.	T	C	665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.311;QD=17.05;ReadPosRankSum=1.644;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:81:698,81,0
chrI	70905	.	G	C	265	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=11.1623;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=12.05;SB=-1.210e+02	GT:AD:DP:GQ:PL	1/1:0,20:21:36:298,36,0
chrI	70943	.	C	T	262	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.56;SB=-1.829e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:33:295,33,0
chrI	71008	.	T	C	379	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=19.9012;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=14.04;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:48:412,48,0
chrI	71281	.	C	T	827	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.23;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:860,102,0
chrI	71312	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.22;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:917,108,0
chrI	71601	.	G	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=15.78;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1453,168,0
chrI	71616	.	C	T	1746	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=17.12;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1779,201,0
chrI	72952	.	T	C	766	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=14.45;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:799,96,0
chrI	73490	.	T	C	756	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:90:789,90,0
chrI	73519	.	A	G	749	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.40;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:93:782,93,0
chrI	73644	.	T	G	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.979;QD=20.89;ReadPosRankSum=1.632;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1495,177,0
chrI	73662	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.84;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1700,198,0
chrI	73694	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.41;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1411,165,0
chrI	73703	.	C	G	1245	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=17.79;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1278,153,0
chrI	73720	.	C	A	1192	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.53;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1225,144,0
chrI	73801	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.73;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1401,162,0
chrI	74136	.	T	C	1896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=3.499;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.658;QD=19.75;ReadPosRankSum=1.695;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:2,93:96:99:1929,231,0
chrI	74208	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=16.94;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1371,156,0
chrI	74209	.	A	C	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.037;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=0.456;QD=16.17;ReadPosRankSum=-0.410;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1262,150,0
chrI	74227	.	G	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=16.45;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1234,141,0
chrI	74241	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.09;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1224,138,0
chrI	74786	.	G	A	915	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.67;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:948,108,0
chrI	75073	.	G	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.51;SB=-1.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1345,156,0
chrI	75211	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.849;QD=20.06;ReadPosRankSum=1.664;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1056,126,0
chrI	75277	.	A	G	1296	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.60;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1329,156,0
chrI	75912	.	A	G	771	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=16.40;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:804,96,0
chrI	76030	.	T	C	746	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=14.08;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:779,93,0
chrI	76051	.	C	T	835	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=14.40;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:868,99,0
chrI	76096	.	T	C	817	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.02;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:850,99,0
chrI	76117	.	T	C	776	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.52;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:809,96,0
chrI	76266	.	T	A	1564	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.72;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1597,180,0
chrI	76417	.	T	C	1079	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.36;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1112,132,0
chrI	76496	.	A	G	524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;MQRankSum=-0.149;QD=14.56;ReadPosRankSum=1.436;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:66:557,66,0
chrI	76497	.	A	G	508	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=14.94;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:63:541,63,0
chrI	76555	.	C	G	910	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=16.85;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:943,111,0
chrI	76840	.	G	A	609	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.92;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:642,72,0
chrI	76861	.	C	T	596	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=15.68;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:629,72,0
chrI	76876	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=0.443;QD=15.30;ReadPosRankSum=1.652;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:81:691,81,0
chrI	77073	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.773;QD=19.58;ReadPosRankSum=1.626;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1325,156,0
chrI	77115	.	G	T	1634	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.22;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1667,195,0
chrI	77152	.	A	G	1293	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0737;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.92;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1326,156,0
chrI	77433	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.55;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1350,156,0
chrI	77554	.	T	G	233	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=4.66;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:30:266,30,0
chrI	77555	.	G	A	259	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.90;MQ0=0;QD=5.18;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:33:292,33,0
chrI	77581	.	T	A	119.13	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;QD=1.75;SB=-6.651e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:18:152,18,0
chrI	77737	.	C	T	1035	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1068,126,0
chrI	77884	.	A	G	1064	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.00;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1097,126,0
chrI	78187	.	T	C	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.7512;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.299;QD=19.76;ReadPosRankSum=1.646;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1614,195,0
chrI	78346	.	A	G	1318	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.67;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1351,162,0
chrI	78392	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.02;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1204,144,0
chrI	78461	.	C	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.51;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1477,171,0
chrI	78560	.	T	C	2030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=106;Dels=0.00;FS=3.584;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.379;QD=19.15;ReadPosRankSum=0.247;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2063,243,0
chrI	78700	.	A	G	1245	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.04;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1278,153,0
chrI	78910	.	T	C	1848	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=17.27;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:1881,216,0
chrI	78929	.	G	A	1955	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.44;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1988,228,0
chrI	78970	.	A	G	1720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.931;DP=102;Dels=0.00;FS=2.566;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=1.862;QD=16.86;ReadPosRankSum=2.773;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:3,99:102:99:1753,204,0
chrI	78973	.	G	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.27;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1760,198,0
chrI	79012	.	T	C	1336	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=17.35;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1369,162,0
chrI	79085	.	C	T	1522	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1555,174,0
chrI	79449	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.72;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1304,156,0
chrI	79659	.	A	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.46;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1517,171,0
chrI	79680	.	T	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.29;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1036,120,0
chrI	79705	.	G	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.94;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1185,135,0
chrI	79924	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.53;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1185,141,0
chrI	80326	.	T	C	2684	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.18;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2717,312,0
chrI	80554	.	G	A	2303	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.57;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2336,264,0
chrI	80946	.	G	A	1864	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.19;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1897,216,0
chrI	81691	.	A	G	801	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.495;QD=19.07;ReadPosRankSum=1.485;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:834,99,0
chrI	81731	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.97;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1165,138,0
chrI	81739	.	T	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=16.93;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1218,144,0
chrI	81841	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.11;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1803,207,0
chrI	82076	.	G	C	660	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=14.04;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:81:693,81,0
chrI	82099	.	C	T	582	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=14.55;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:72:615,72,0
chrI	82230	.	C	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.70;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1471,168,0
chrI	82244	.	A	G	1376	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=17.87;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1409,165,0
chrI	82323	.	G	A	1325	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=15.41;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1358,162,0
chrI	82379	.	G	A	1528	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.59;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1561,180,0
chrI	82444	.	C	G	891	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.47;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:924,111,0
chrI	82662	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.46;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1395,162,0
chrI	82670	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.967;QD=18.12;ReadPosRankSum=1.687;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1446,171,0
chrI	82711	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.65;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1562,189,0
chrI	83309	.	T	C	1816	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9764;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.34;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1849,216,0
chrI	83337	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.93;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1339,156,0
chrI	83613	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.72;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1415,168,0
chrI	83755	.	T	C	1071	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=14.47;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1104,132,0
chrI	83903	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.0066;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.22;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1527,177,0
chrI	84106	.	C	G	1117	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=15.51;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1150,132,0
chrI	84108	.	A	G	1076	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-0.756;QD=15.15;ReadPosRankSum=1.683;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1109,129,0
chrI	84167	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=13.99;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1026,123,0
chrI	84319	.	T	C	1452	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9041;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=16.31;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:89:99:1485,171,0
chrI	84349	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=92;Dels=0.00;FS=3.908;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.123;QD=16.91;ReadPosRankSum=0.818;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1589,189,0
chrI	84438	.	G	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.11;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1824,213,0
chrI	84858	.	C	A	1620	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.84;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1653,192,0
chrI	85034	.	C	T	1429	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.0657;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.64;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1462,165,0
chrI	85265	.	A	C	1124	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.61;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1157,138,0
chrI	85373	.	T	C	1157	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=16.53;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1190,138,0
chrI	85436	.	A	T	901	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.17;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:934,108,0
chrI	85480	.	C	T	1005	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.51;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1038,117,0
chrI	85590	.	C	G	1076	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.88;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1109,132,0
chrI	86018	.	T	G	826	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.67;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:859,102,0
chrI	86084	.	T	C	1022	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1055,123,0
chrI	86597	.	A	G	895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.106;QD=18.27;ReadPosRankSum=1.591;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:928,108,0
chrI	86648	.	A	G	826	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.010;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.496;QD=18.77;ReadPosRankSum=1.654;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:859,99,0
chrI	86849	.	C	T	1311	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.57;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1344,153,0
chrI	86939	.	C	T	852	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=15.78;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:885,102,0
chrI	86963	.	G	A	939	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=14.90;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:972,114,0
chrI	87490	.	T	C	3361.01	PASS	AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.7118;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.54;SB=-1.921e+03	GT:AD:DP:GQ:PL	1/1:0,171:172:99:3361,390,0
chrI	87548	.	A	G	2210	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=109;Dels=0.00;FS=9.777;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.287;QD=20.28;ReadPosRankSum=2.843;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:3,106:109:99:2243,267,0
chrI	87602	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.71;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1618,189,0
chrI	87608	.	A	T	1634	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.79;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1667,189,0
chrI	87780	.	G	T	2438	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.29;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,141:141:99:2471,285,0
chrI	87859	.	T	G	3069	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.06;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,148:153:99:3102,363,0
chrI	87911	.	T	C	1751	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.04;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1784,213,0
chrI	88008	.	A	G	909	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.64;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:942,111,0
chrI	88212	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.86;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1194,138,0
chrI	88393	.	A	C	977	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1010,120,0
chrI	88638	.	A	G	1449	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.32;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1482,177,0
chrI	88645	.	G	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.76;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1609,192,0
chrI	88745	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=55;Dels=0.00;FS=2.915;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.337;QD=18.84;ReadPosRankSum=2.271;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:1069,126,0
chrI	90330	.	G	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.36;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1311,153,0
chrI	90387	.	G	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1283,147,0
chrI	90516	.	G	A	900	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.31;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:933,105,0
chrI	90665	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.66;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1134,132,0
chrI	90924	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=18.90;ReadPosRankSum=1.617;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1167,138,0
chrI	90981	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.800;QD=19.63;ReadPosRankSum=1.599;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1054,126,0
chrI	91044	.	A	T	1001	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.458;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.985;QD=19.63;ReadPosRankSum=1.664;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1034,120,0
chrI	91173	.	G	A	994	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.49;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1027,120,0
chrI	91314	.	G	C	716	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.90;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,37:40:87:749,87,0
chrI	91665	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.44;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1341,153,0
chrI	91791	.	A	C	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=3.900;HaplotypeScore=7.4661;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.283;QD=19.37;ReadPosRankSum=1.668;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1079,129,0
chrI	91902	.	G	A	1645	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.09;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1678,192,0
chrI	91938	.	A	T	1934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.876;QD=21.73;ReadPosRankSum=1.693;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1967,222,0
chrI	92064	.	A	G	2126	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.06;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2159,255,0
chrI	92115	.	G	C	1608	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.62;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1641,195,0
chrI	92310	.	G	T	2038	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.80;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2071,231,0
chrI	92368	.	A	T	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=18.2937;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.966;QD=17.79;ReadPosRankSum=1.699;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1919,225,0
chrI	92532	.	C	T	914	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.4685;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.31;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:947,108,0
chrI	92549	.	T	C	818	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.95;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:851,102,0
chrI	92671	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=17.28;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1087,126,0
chrI	92679	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;MQRankSum=-0.025;QD=15.81;ReadPosRankSum=1.682;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1140,135,0
chrI	92703	.	G	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=19.17;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1413,162,0
chrI	92719	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=15.05;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1297,150,0
chrI	92722	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=14.84;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1250,144,0
chrI	92891	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.67;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1552,180,0
chrI	92934	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=18.11;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1482,171,0
chrI	92941	.	A	G	1325	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=17.43;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1358,159,0
chrI	92955	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=17.97;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1345,162,0
chrI	92983	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=16.88;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1552,174,0
chrI	93115	.	A	G	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.4397;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.908;QD=17.36;ReadPosRankSum=-0.068;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1613,192,0
chrI	93184	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=15.69;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1398,165,0
chrI	93310	.	C	G	944	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=14.75;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:977,117,0
chrI	93319	.	A	G	914	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=14.98;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:947,111,0
chrI	93325	.	C	T	867	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=14.21;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:900,105,0
chrI	93466	.	A	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.64;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1622,192,0
chrI	93563	.	G	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.36;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1214,144,0
chrI	93733	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.05;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1195,138,0
chrI	93745	.	G	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.36;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:66:99:1245,144,0
chrI	93789	.	T	A	877	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=14.86;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:910,102,0
chrI	93865	.	G	T	1098	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=15.25;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1131,129,0
chrI	94285	.	T	C	1756	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.68;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1789,213,0
chrI	94472	.	G	A	3006	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.27;SB=-1.370e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:3039,342,0
chrI	94682	.	G	A	1116	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=16.17;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1149,135,0
chrI	94767	.	C	G	2685	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=11.8835;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.46;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,136:138:99:2718,312,0
chrI	94863	.	A	G	2809	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.61;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2842,330,0
chrI	94915	.	A	G	1896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.037;QD=20.17;ReadPosRankSum=1.585;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1929,228,0
chrI	95018	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.16;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1384,165,0
chrI	95055	.	G	A	1394	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.63;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1427,162,0
chrI	95139	.	G	A	1876	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.14;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1909,219,0
chrI	95169	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.87;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1920,216,0
chrI	95190	.	T	C	1681	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.51;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1714,204,0
chrI	95238	.	A	T	1685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.640;QD=18.32;ReadPosRankSum=1.657;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1718,198,0
chrI	95281	.	G	A	2125	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.24;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2158,243,0
chrI	95373	.	G	A	1028	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=15.82;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1061,123,0
chrI	95376	.	T	C	914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.678;QD=13.25;ReadPosRankSum=1.582;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:947,114,0
chrI	95388	.	A	G	713	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;MQRankSum=-1.245;QD=11.14;ReadPosRankSum=1.624;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:87:746,87,0
chrI	95391	.	T	C	749	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=11.89;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:93:782,93,0
chrI	95412	.	G	C	824	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=12.48;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:857,99,0
chrI	95448	.	G	A	1325	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.49;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1358,153,0
chrI	95552	.	G	C	2933	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.73;SB=-1.536e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2966,354,0
chrI	96047	.	C	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.90;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1744,201,0
chrI	96079	.	A	G	1411	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.45;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1444,168,0
chrI	96092	.	G	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.13;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1422,165,0
chrI	97418	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1507,168,0
chrI	97595	.	G	C	782	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.62;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:96:815,96,0
chrI	97709	.	T	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.90;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1068,123,0
chrI	98347	.	A	G	874	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.33;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:907,108,0
chrI	98419	.	A	T	1263	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.70;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1296,147,0
chrI	98636	.	A	T	781	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.11;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:93:814,93,0
chrI	98885	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.77;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1570,174,0
chrI	99056	.	C	T	1201	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.9781;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.02;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1234,144,0
chrI	99227	.	C	T	1241	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.00;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1274,144,0
chrI	99440	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.53;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1295,150,0
chrI	99471	.	A	G	1103	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.787;QD=16.71;ReadPosRankSum=1.680;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1136,135,0
chrI	99606	.	T	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.29;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1171,132,0
chrI	99929	.	A	G	658	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=14.62;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:84:691,84,0
chrI	100000	.	A	T	742	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=33.4332;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=11.59;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:90:775,90,0
chrI	100063	.	A	T	897	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=12.46;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:930,108,0
chrI	100273	.	G	A	1030	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=16.09;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1063,120,0
chrI	100840	.	C	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=17.67;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1058,120,0
chrI	101177	.	G	C	592	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=15.18;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:75:625,75,0
chrI	101193	.	T	C	564	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=16.11;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:72:597,72,0
chrI	101198	.	A	G	526	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=15.03;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:66:559,66,0
chrI	101230	.	C	G	313	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=14.90;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:42:346,42,0
chrI	101371	.	A	T	1851	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=24.68;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1884,213,0
chrI	101471	.	G	A	690	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.4664;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=12.78;SB=-2.050e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:723,87,0
chrI	101563	.	C	T	876	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.37;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:909,105,0
chrI	101581	.	T	C	890	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.78;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:923,108,0
chrI	101607	.	A	G	1031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.489;QD=17.47;ReadPosRankSum=1.672;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,56:59:99:1064,126,0
chrI	101712	.	G	A	1424	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.78;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1457,165,0
chrI	101991	.	G	A	862	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.90;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:895,105,0
chrI	102345	.	C	T	920	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.04;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:953,108,0
chrI	102348	.	A	G	825	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.50;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:858,102,0
chrI	102420	.	C	T	764	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=12.95;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:96:797,96,0
chrI	102483	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.26;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1301,147,0
chrI	102486	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=16.81;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1395,156,0
chrI	102606	.	G	A	925	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=16.82;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:958,114,0
chrI	102814	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=16.73;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:886,102,0
chrI	102864	.	T	A	904	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=16.74;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:937,108,0
chrI	102978	.	C	T	781	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=8.0725;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=15.02;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:93:814,93,0
chrI	103068	.	A	G	900	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=15.79;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:933,114,0
chrI	103110	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.51;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1088,126,0
chrI	103141	.	A	G	782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=3.499;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.995;QD=16.29;ReadPosRankSum=1.659;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:815,99,0
chrI	103146	.	T	C	827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.829;QD=17.98;ReadPosRankSum=1.657;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:860,102,0
chrI	103307	.	G	T	453	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.10;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:57:486,57,0
chrI	103724	.	T	C	1508	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1541,183,0
chrI	103782	.	T	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1711,207,0
chrI	103899	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.621;QD=18.08;ReadPosRankSum=1.667;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:991,120,0
chrI	104042	.	T	G	1552	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.26;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1585,183,0
chrI	104469	.	T	C	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.239;QD=21.29;ReadPosRankSum=1.673;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1268,144,0
chrI	105028	.	C	T	628	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.70;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:75:661,75,0
chrI	105800	.	C	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.74;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1062,120,0
chrI	106085	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.943;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.945;QD=18.30;ReadPosRankSum=2.386;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1442,171,0
chrI	106104	.	C	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=15.07;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1178,141,0
chrI	106109	.	G	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=16.39;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1246,141,0
chrI	106137	.	C	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=14.67;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1251,150,0
chrI	106764	.	A	G	825	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=17.55;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:858,102,0
chrI	106989	.	C	T	1032	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.49;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1065,123,0
chrI	107001	.	C	T	1175	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.65;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1208,135,0
chrI	107028	.	C	T	915	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.60;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:948,108,0
chrI	107078	.	A	G	759	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=17.65;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:792,93,0
chrI	107319	.	C	T	1313	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.76;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1346,156,0
chrI	107505	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.35;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1485,174,0
chrI	107538	.	G	A	1660	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.28;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1693,195,0
chrI	107970	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1480,171,0
chrI	108108	.	A	G	806	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.15;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:839,102,0
chrI	108391	.	G	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.04;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1080,123,0
chrI	108426	.	C	T	961	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=17.80;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:994,114,0
chrI	108581	.	G	T	669	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.32;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:702,81,0
chrI	108813	.	G	A	1761	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1794,213,0
chrI	109447	.	G	C	1997	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.8586;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.71;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2030,231,0
chrI	109720	.	A	C	1166	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=17.94;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1199,144,0
chrI	109735	.	A	G	1228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=4.260;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.337;QD=16.82;ReadPosRankSum=1.684;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1261,150,0
chrI	109795	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.06;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1517,180,0
chrI	109887	.	T	C	1874	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.58;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1907,228,0
chrI	110014	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=3.280;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.772;QD=21.05;ReadPosRankSum=1.690;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1801,207,0
chrI	110101	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2504;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.09;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1720,195,0
chrI	110131	.	T	C	1806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.243;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.306;QD=21.25;ReadPosRankSum=1.691;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1839,219,0
chrI	110595	.	A	G	3038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=153;Dels=0.00;FS=5.415;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;MQRankSum=-1.166;QD=19.86;ReadPosRankSum=2.914;SB=-1.423e+03	GT:AD:DP:GQ:PL	1/1:3,149:153:99:3071,360,0
chrI	110856	.	T	C	1234	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.88;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1267,150,0
chrI	110981	.	C	G	1437	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.42;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,74:78:99:1470,171,0
chrI	111180	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.945;QD=17.32;ReadPosRankSum=1.680;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1176,141,0
chrI	111344	.	A	G	891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.217;QD=18.56;ReadPosRankSum=1.588;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:924,108,0
chrI	111401	.	A	G	772	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=14.57;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:93:805,93,0
chrI	111581	.	G	A	914	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=14.28;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:947,111,0
chrI	111655	.	G	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.61;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1336,153,0
chrI	111983	.	C	T	887	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.74;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:920,105,0
chrI	112117	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.53;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1737,198,0
chrI	112136	.	G	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=14.54;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1342,159,0
chrI	112184	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.732;QD=18.48;ReadPosRankSum=1.639;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1419,165,0
chrI	112207	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.03;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1400,165,0
chrI	112232	.	G	A	1052	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=16.97;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1085,129,0
chrI	112339	.	A	G	833	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.11;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:866,102,0
chrI	112373	.	C	G	719	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=15.63;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:752,90,0
chrI	112808	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.0668;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.76;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1515,168,0
chrI	113207	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.50;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1427,168,0
chrI	113326	.	C	G	581	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=13.51;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:72:614,72,0
chrI	113789	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.9402;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.90;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1375,156,0
chrI	113857	.	G	C	1149	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.89;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1182,141,0
chrI	114070	.	T	C	933	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.60;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:966,114,0
chrI	114102	.	C	T	836	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.42;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:869,99,0
chrI	114133	.	T	C	698	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=14.24;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:87:731,87,0
chrI	114148	.	T	G	819	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.0078;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=13.65;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:852,102,0
chrI	114227	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.169;QD=16.57;ReadPosRankSum=1.605;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1392,162,0
chrI	114319	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.60;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1052,126,0
chrI	114589	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.2638;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.253;QD=17.77;ReadPosRankSum=1.648;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1490,177,0
chrI	114652	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=16.66;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1249,138,0
chrI	114824	.	C	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.08;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1287,147,0
chrI	114928	.	T	C	1032	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.20;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1065,126,0
chrI	115167	.	C	T	970	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.40;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1003,114,0
chrI	115339	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.50;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1409,159,0
chrI	115494	.	T	C	1088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.270;QD=18.13;ReadPosRankSum=1.559;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1121,135,0
chrI	115512	.	G	C	1086	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.05;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1119,129,0
chrI	115590	.	G	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.62;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1392,168,0
chrI	115785	.	C	T	2147	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7524;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.88;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2180,246,0
chrI	115917	.	G	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.29;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1494,180,0
chrI	115974	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.358;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.749;QD=14.24;ReadPosRankSum=-1.639;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1087,105,0
chrI	115977	.	G	A	1010	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=13.47;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1043,126,0
chrI	116201	.	C	G	1888	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.30;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1921,228,0
chrI	116238	.	A	T	2105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=110;Dels=0.00;FS=3.979;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.598;QD=19.14;ReadPosRankSum=1.701;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2138,249,0
chrI	116327	.	T	C	954	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=13.25;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:987,117,0
chrI	116334	.	C	T	791	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=12.56;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:96:824,96,0
chrI	116340	.	T	C	779	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=12.98;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:96:812,96,0
chrI	116511	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=16.93;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1421,162,0
chrI	116548	.	A	G	1407	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.358;QD=18.76;ReadPosRankSum=1.592;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1440,171,0
chrI	117369	.	T	C	1308	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=77;Dels=0.00;FS=8.347;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.247;QD=16.99;ReadPosRankSum=2.351;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:2,73:77:99:1341,156,0
chrI	117504	.	A	C	1088	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.76;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1121,132,0
chrI	117510	.	C	T	996	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=14.87;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1029,120,0
chrI	117648	.	G	A	2180	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.71;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2213,249,0
chrI	117669	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.88;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1564,180,0
chrI	117699	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.29;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1152,135,0
chrI	117940	.	C	T	2120	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.78;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2153,243,0
chrI	118116	.	G	A	839	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.64;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:872,99,0
chrI	118143	.	T	C	713	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.28;SB=-1.240e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:746,87,0
chrI	118304	.	C	T	1229	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.48;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1262,144,0
chrI	118540	.	G	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.49;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1172,138,0
chrI	119207	.	G	A	1552	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.97;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1585,180,0
chrI	119344	.	G	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=16.54;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1257,147,0
chrI	119350	.	A	G	1296	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=17.75;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1329,159,0
chrI	119394	.	C	T	1087	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=15.99;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1120,126,0
chrI	119404	.	G	C	931	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=14.55;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:964,114,0
chrI	119460	.	G	A	794	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=15.27;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:96:827,96,0
chrI	119599	.	C	T	1747	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.0317;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.83;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1780,204,0
chrI	119659	.	T	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.55;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1800,207,0
chrI	119951	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.74;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1257,147,0
chrI	120281	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1295,153,0
chrI	120347	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.14;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1124,129,0
chrI	120378	.	G	A	893	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=15.67;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:926,105,0
chrI	122768	.	G	A	990	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.33;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1023,117,0
chrI	122795	.	C	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.80;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1142,132,0
chrI	122846	.	G	C	1416	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.23;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1449,171,0
chrI	123008	.	G	C	773	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.80;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:96:806,96,0
chrI	123047	.	T	A	685	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.76;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:81:718,81,0
chrI	123074	.	A	G	915	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.80;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:948,111,0
chrI	123287	.	T	G	1779	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.72;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1812,216,0
chrI	123717	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.03;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1139,135,0
chrI	123785	.	A	C	1067	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1100,132,0
chrI	123842	.	A	G	1553	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.27;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1586,189,0
chrI	123890	.	C	T	2115	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.94;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2148,249,0
chrI	124181	.	T	C	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.778;QD=21.37;ReadPosRankSum=1.697;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,97:100:99:2170,261,0
chrI	124367	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=17.67;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1270,147,0
chrI	124373	.	T	C	1304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=7.901;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=1.264;QD=17.62;ReadPosRankSum=1.685;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1337,159,0
chrI	124452	.	C	T	2026	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.0951;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=18.93;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2059,228,0
chrI	124539	.	G	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.69;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1707,198,0
chrI	124567	.	T	G	1563	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.33;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1596,189,0
chrI	124583	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=5.846;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.024;QD=21.11;ReadPosRankSum=1.685;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1574,183,0
chrI	124646	.	C	A	610	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.11;MQ0=0;QD=9.84;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:75:643,75,0
chrI	124649	.	A	G	619	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=10.15;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:78:652,78,0
chrI	124657	.	A	G	680	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=10.30;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:84:713,84,0
chrI	124665	.	A	C	611	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=8.99;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:75:644,75,0
chrI	124671	.	A	G	692	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;QD=10.33;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:84:725,84,0
chrI	124719	.	A	C	1249	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.64;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1282,153,0
chrI	124804	.	G	C	1276	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2745;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.63;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1309,153,0
chrI	124906	.	G	A	1315	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.67;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1348,153,0
chrI	124950	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.06;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1272,144,0
chrI	124984	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=14.49;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1062,126,0
chrI	124986	.	A	G	1021	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=14.38;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1054,126,0
chrI	125133	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.81;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1155,135,0
chrI	125307	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.49;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1027,117,0
chrI	125382	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.34;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1005,120,0
chrI	125610	.	G	A	1041	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.28;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1074,120,0
chrI	125793	.	A	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1392,159,0
chrI	126114	.	C	T	1336	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.56;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1369,159,0
chrI	126258	.	G	A	713	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.8388;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.98;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:746,84,0
chrI	126468	.	A	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.69;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1341,159,0
chrI	126483	.	G	A	1314	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.77;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1347,153,0
chrI	126600	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=20.86;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1556,177,0
chrI	126897	.	C	T	379	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=7.15;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:48:412,48,0
chrI	126902	.	C	G	485	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=9.51;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:63:518,63,0
chrI	127227	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.35;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1407,171,0
chrI	127274	.	C	G	1173	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.22;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1206,141,0
chrI	127410	.	A	G	1173	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.05;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1206,141,0
chrI	127533	.	G	A	1363	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.17;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1396,162,0
chrI	127572	.	G	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=16.92;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1319,156,0
chrI	127881	.	C	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1748;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.31;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1404,159,0
chrI	127902	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=73;Dels=0.00;FS=5.903;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.292;QD=15.64;ReadPosRankSum=2.904;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1175,138,0
chrI	128052	.	C	T	984	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.50;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1017,117,0
chrI	128423	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.63;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1564,180,0
chrI	128455	.	G	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.51;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1428,162,0
chrI	128589	.	T	A	1106	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.84;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1139,129,0
chrI	128662	.	C	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.49;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1253,144,0
chrI	128756	.	T	G	1659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.425;QD=20.74;ReadPosRankSum=1.688;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1692,198,0
chrI	128843	.	T	C	907	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=15.12;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:940,111,0
chrI	129063	.	T	C	616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=6.368;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;MQRankSum=-0.067;QD=11.62;ReadPosRankSum=1.599;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:75:649,75,0
chrI	129075	.	T	C	557	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=10.92;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:69:590,69,0
chrI	132444	.	G	C	941	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=15.68;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:974,114,0
chrI	140397	.	T	C	60.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;DP=47;Dels=0.00;FS=6.727;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.66;MQ0=25;MQRankSum=-2.430;QD=1.28;ReadPosRankSum=-1.248;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:24,23:47:90:90,0,150
chrI	140418	.	G	A	167.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;DP=57;Dels=0.00;FS=10.583;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=20.41;MQ0=20;MQRankSum=-0.430;QD=2.93;ReadPosRankSum=-0.366;SB=-7.001e+01	GT:AD:DP:GQ:PL	0/1:26,30:57:99:197,0,224
chrI	140490	.	A	G	409.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;DP=80;Dels=0.00;FS=3.448;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.60;MQ0=16;MQRankSum=-2.496;QD=5.11;ReadPosRankSum=1.352;SB=-1.030e+02	GT:AD:DP:GQ:PL	0/1:36,44:80:99:439,0,500
chrI	140526	.	C	T	173.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;DP=70;Dels=0.00;FS=12.722;HaplotypeScore=6.4654;MLEAC=1;MLEAF=0.500;MQ=23.04;MQ0=29;MQRankSum=-3.901;QD=2.47;ReadPosRankSum=-1.590;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,37:70:99:203,0,282
chrI	141030	.	T	A	1008	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=11;MQRankSum=-1.732;QD=18.33;ReadPosRankSum=1.654;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1041,120,0
chrI	141135	.	A	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=1;QD=23.39;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1717,198,0
chrI	147414	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.50;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1108,129,0
chrI	147507	.	G	T	1085	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1118,129,0
chrI	147598	.	G	A	2724	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5384;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=18.04;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,151:151:99:2757,321,0
chrI	147607	.	T	A	3060	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.153;QD=20.26;ReadPosRankSum=2.954;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:3,148:151:99:3093,351,0
chrI	147655	.	G	C	2116	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.09;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2149,258,0
chrI	147717	.	T	A	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-1.682;QD=17.65;ReadPosRankSum=1.682;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1251,141,0
chrI	147726	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=17.87;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1159,135,0
chrI	147759	.	T	A	905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.159;DP=51;Dels=0.00;FS=2.960;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.092;QD=17.75;ReadPosRankSum=2.354;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:938,105,0
chrI	148146	.	A	T	1380	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=2.932;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.707;QD=18.90;ReadPosRankSum=2.315;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1413,159,0
chrI	148886	.	C	T	804	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.70;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:837,96,0
chrI	148974	.	C	G	1073	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1106,132,0
chrI	149268	.	T	C	705	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.55;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:738,90,0
chrI	149307	.	T	C	756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.112;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.330;QD=17.58;ReadPosRankSum=1.571;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:93:789,93,0
chrI	149594	.	T	C	689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=48;Dels=0.00;FS=3.617;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.130;QD=14.35;ReadPosRankSum=1.657;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:1,45:48:84:722,84,0
chrI	149773	.	C	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.58;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1103,126,0
chrI	149796	.	C	T	867	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=18.45;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:900,102,0
chrI	149803	.	G	A	733	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=15.93;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:766,90,0
chrI	149913	.	C	A	903	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:936,108,0
chrI	149973	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.47;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:913,108,0
chrI	150002	.	T	C	851	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:884,105,0
chrI	150243	.	C	T	903	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.81;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:936,105,0
chrI	150303	.	G	A	891	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.37;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:924,105,0
chrI	157801	.	T	C	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.299;QD=18.52;ReadPosRankSum=1.613;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1107,132,0
chrI	159623	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.36;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1784,198,0
chrI	159724	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.57;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2111,252,0
chrI	159757	.	T	G	1724	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.54;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1757,204,0
chrI	159894	.	G	A	3680.01	PASS	AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=51.78;MQ0=0;QD=19.78;SB=-1.663e+03	GT:AD:DP:GQ:PL	1/1:0,185:186:99:3680,423,0
chrI	160179	.	C	A	2157	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=18.76;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2190,246,0
chrI	160234	.	G	A	971	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.95;MQ0=0;QD=17.65;SB=-1.530e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1004,114,0
chrI	166111	.	A	G	124.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=88;Dels=0.00;FS=17.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.47;MQ0=29;MQRankSum=-0.851;QD=1.41;ReadPosRankSum=-1.732;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:30,58:88:18:157,18,0
chrI	166116	.	T	C	127.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.675;DP=83;Dels=0.00;FS=17.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=24;MQRankSum=0.088;QD=1.53;ReadPosRankSum=-1.732;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:24,58:83:18:160,18,0
chrI	166118	.	A	G	120.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.263;DP=81;Dels=0.00;FS=17.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=22;MQRankSum=0.617;QD=1.48;ReadPosRankSum=-1.732;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:23,58:81:18:153,18,0
chrI	166120	.	G	T	100.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;DP=79;Dels=0.00;FS=17.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=20;MQRankSum=-0.440;QD=1.27;ReadPosRankSum=-1.732;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:20,58:79:15:133,15,0
chrI	166122	.	A	T	128.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.851;DP=77;Dels=0.00;FS=17.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=18;MQRankSum=-1.086;QD=1.66;ReadPosRankSum=-1.732;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:19,58:77:18:161,18,0
chrI	166128	.	T	A	123.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=73;Dels=0.00;FS=17.709;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=14;MQRankSum=-0.851;QD=1.69;ReadPosRankSum=-1.204;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:14,59:73:18:156,18,0
chrI	166130	.	G	A	102.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=72;Dels=0.00;FS=17.709;HaplotypeScore=7.9237;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=13;MQRankSum=0.851;QD=1.42;ReadPosRankSum=-1.204;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:14,58:72:15:135,15,0
chrI	166133	.	A	G	126.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=70;Dels=0.00;FS=17.709;HaplotypeScore=5.9410;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=11;MQRankSum=0.206;QD=1.80;ReadPosRankSum=0.675;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:12,58:70:18:159,18,0
chrI	166134	.	G	A	127.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=70;Dels=0.00;FS=17.709;HaplotypeScore=5.9410;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=11;MQRankSum=1.321;QD=1.82;ReadPosRankSum=0.851;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:10,60:70:18:160,18,0
chrI	166136	.	A	C	127.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=68;Dels=0.00;FS=17.709;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=9;MQRankSum=0.499;QD=1.87;ReadPosRankSum=1.028;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:10,58:68:18:160,18,0
chrI	166139	.	T	A	129.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.206;DP=67;Dels=0.00;FS=17.709;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.19;MQ0=8;MQRankSum=0.617;QD=1.93;ReadPosRankSum=1.028;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:9,58:67:18:162,18,0
chrI	166245	.	A	T	3338.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.35;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,164:164:99:3338,378,0
chrI	166369	.	T	C	2697	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.5471;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.75;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2730,330,0
chrI	166429	.	A	G	3553.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=21.66;SB=-1.795e+03	GT:AD:DP:GQ:PL	1/1:0,164:164:99:3553,420,0
chrI	166571	.	G	A	4481.01	PASS	AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=13.0331;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.48;SB=-1.676e+03	GT:AD:DP:GQ:PL	1/1:0,230:230:99:4481,510,0
chrI	166733	.	A	G	2182	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.18;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2215,261,0
chrI	166820	.	C	T	1726	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.84;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1759,207,0
chrI	166931	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.8899;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.768;QD=17.48;ReadPosRankSum=2.276;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1519,180,0
chrI	167064	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=16.71;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1236,141,0
chrI	167080	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4362;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=16.06;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1302,156,0
chrI	167179	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.24;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1435,171,0
chrI	173222	.	A	C	1485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.069;HaplotypeScore=5.8075;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.023;QD=19.54;ReadPosRankSum=1.686;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1518,180,0
chrI	174465	.	G	A	2021	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.78;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2054,234,0
chrI	174746	.	T	G	786	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.72;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:96:819,96,0
chrI	175307	.	T	A	1843	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.03;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1876,216,0
chrI	175318	.	C	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.94;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,96:101:99:1744,204,0
chrI	175354	.	G	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.23;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1456,165,0
chrI	175409	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.346;QD=20.82;ReadPosRankSum=1.679;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1386,165,0
chrI	175824	.	G	T	2032	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.73;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2065,231,0
chrI	175849	.	T	C	1442	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4706;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=17.17;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1475,177,0
chrI	175876	.	C	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.62;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1225,138,0
chrI	175935	.	C	T	1250	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.53;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1283,147,0
chrI	175963	.	A	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.00;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1613,189,0
chrI	176001	.	T	C	1938	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.78;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1971,237,0
chrI	176015	.	T	C	1641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.482;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-1.613;QD=18.65;ReadPosRankSum=1.692;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1674,195,0
chrI	176220	.	T	C	997	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=16.90;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1030,120,0
chrI	176266	.	A	T	619	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.377;QD=15.47;ReadPosRankSum=1.644;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:1,39:40:72:652,72,0
chrI	176368	.	C	T	87.26	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.93;SB=-2.556e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:120,15,0
chrI	178541	.	A	G	1307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=11.116;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.645;QD=19.51;ReadPosRankSum=2.376;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1340,162,0
chrI	178602	.	G	C	1405	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=17.56;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1438,168,0
chrI	178614	.	G	A	1440	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.73;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1473,168,0
chrI	178654	.	G	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=16.73;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1137,129,0
chrI	178989	.	A	G	999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-1.633;QD=13.87;ReadPosRankSum=1.683;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1032,120,0
chrI	179051	.	A	G	1267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.332;QD=16.04;ReadPosRankSum=1.599;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1300,153,0
chrI	179052	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.592;QD=16.34;ReadPosRankSum=1.601;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1324,153,0
chrI	179149	.	G	C	606	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=13.17;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:75:639,75,0
chrI	179185	.	C	T	765	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=12.3098;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=13.66;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:93:798,93,0
chrI	179221	.	A	G	663	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.7099;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=14.11;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:696,84,0
chrI	179247	.	T	C	704	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=14.67;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:737,87,0
chrI	179437	.	C	G	731	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=15.55;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:764,90,0
chrI	179614	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.65;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2139,243,0
chrI	179772	.	T	C	753	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=14.21;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:786,93,0
chrI	179796	.	A	C	563	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=13.09;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:72:596,72,0
chrI	179942	.	C	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.27;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1787,204,0
chrI	179996	.	A	G	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.793;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.639;QD=15.76;ReadPosRankSum=2.403;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:2,104:106:99:1704,204,0
chrI	180105	.	A	C	1255	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.96;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1288,150,0
chrI	180139	.	A	G	1038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=60;Dels=0.00;FS=7.214;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.733;QD=17.30;ReadPosRankSum=2.367;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:2,57:60:99:1071,129,0
chrI	180266	.	G	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.0307;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.96;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1344,159,0
chrI	180286	.	A	G	1429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=84;Dels=0.00;FS=3.047;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-2.331;QD=17.01;ReadPosRankSum=2.361;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:2,81:84:99:1462,171,0
chrI	180328	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=19.81;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1618,183,0
chrI	180356	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.22;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1801,210,0
chrI	180592	.	A	G	1229	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.48;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1262,150,0
chrI	180747	.	A	G	961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=0.379;QD=15.02;ReadPosRankSum=1.678;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:994,114,0
chrI	180822	.	T	C	630	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.00;SB=-1.850e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:663,78,0
chrI	181013	.	T	C	569	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=16.74;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:72:602,72,0
chrI	183596	.	C	T	143.06	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=0;QD=13.01;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,11:11:21:176,21,0
chrI	183655	.	G	T	342	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=20.12;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,17:17:48:375,48,0
chrI	183662	.	T	C	286	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=0;QD=17.87;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:16:42:319,42,0
chrI	183675	.	C	T	184	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=18.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,10:10:30:217,30,0
chrI	183689	.	T	A	75.26	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=15.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,5:5:15:108,15,0
chrI	183859	.	A	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=3.01;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:43,6,0
chrI	183865	.	T	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=3.01;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:43,6,0
chrI	183871	.	C	T	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=3.01;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:43,6,0
chrI	183872	.	A	C	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=3.01;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:43,6,0
chrI	183882	.	G	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=2.41;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,5:5:6:43,6,0
chrI	183909	.	G	A	16.85	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=3.37;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,5:5:6:48,6,0
chrI	183912	.	G	A	17.84	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=3.57;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,5:5:6:49,6,0
chrI	183915	.	A	T	13.94	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=2.79;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,5:5:6:45,6,0
chrI	183920	.	C	A	64.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=8.06;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:12:97,12,0
chrI	183923	.	A	G	62.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=7.81;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:12:95,12,0
chrI	183930	.	T	C	63.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=4.9123;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=9.07;SB=-4.542e-01	GT:AD:DP:GQ:PL	1/1:0,7:7:12:96,12,0
chrI	183952	.	G	A	42.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=4.30;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:9:75,9,0
chrI	183955	.	T	C	39.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=4.00;SB=-9.731e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:9:72,9,0
chrI	183956	.	T	C	37.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=3.80;SB=-9.731e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:9:70,9,0
chrI	183962	.	A	T	41.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.82;SB=-9.775e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:9:74,9,0
chrI	183965	.	A	C	39.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.63;SB=-9.775e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:9:72,9,0
chrI	183966	.	C	T	37.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.45;SB=-9.775e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:9:70,9,0
chrI	183967	.	G	A	40.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=0;QD=3.72;SB=-9.775e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:9:73,9,0
chrI	187969	.	A	G	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.60;MQ0=6;QD=1.34;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:6:54,6,0
chrI	187971	.	G	A	45.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.53;MQ0=6;QD=2.30;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,18:20:9:78,9,0
chrI	187974	.	G	A	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=6;QD=2.33;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:9:81,9,0
chrI	188063	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=2;QD=19.40;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1236,141,0
chrI	188151	.	T	C	274	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=2;QD=18.27;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:36:307,36,0
chrI	188167	.	C	T	178.03	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=2;QD=16.18;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,11:11:24:211,24,0
chrI	188190	.	T	C	42.97	filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=4;QD=5.37;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,8:8:9:75,9,0
chrI	188369	.	G	T	1760	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=2;QD=20.00;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1793,204,0
chrI	188386	.	A	G	1261	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=74;Dels=0.00;FS=9.939;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=6;MQRankSum=-2.160;QD=17.04;ReadPosRankSum=2.232;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1294,153,0
chrI	188674	.	G	A	628	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.32;MQ0=6;QD=13.96;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:661,75,0
chrI	188708	.	A	G	597	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=1;QD=14.92;SB=-1.260e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:75:630,75,0
chrI	188939	.	A	G	760	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=3;QD=13.33;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:93:793,93,0
chrI	189006	.	T	G	459	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=15.30;SB=-2.340e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:57:492,57,0
chrI	189066	.	T	C	68.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=3;MQRankSum=-1.737;QD=4.28;ReadPosRankSum=1.470;SB=-2.751e+01	GT:AD:DP:GQ:PL	1/1:1,15:16:12:101,12,0
chrI	189242	.	A	G	318	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=12;QD=8.83;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:42:351,42,0
chrI	189245	.	A	G	339	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=13;QD=9.42;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,35:36:42:372,42,0
chrI	189392	.	C	T	738	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=6;QD=19.95;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:771,90,0
chrI	189482	.	T	A	250	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=5;MQRankSum=-0.226;QD=8.93;ReadPosRankSum=1.583;SB=-7.900e+01	GT:AD:DP:GQ:PL	1/1:1,27:28:33:283,33,0
chrI	189539	.	C	T	405	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=19;QD=9.42;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:51:438,51,0
chrI	189587	.	C	T	279	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.103;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.05;MQ0=18;MQRankSum=0.315;QD=6.80;ReadPosRankSum=0.315;SB=-5.500e+01	GT:AD:DP:GQ:PL	1/1:1,39:41:36:312,36,0
chrI	189627	.	T	C	326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=3;MQRankSum=0.963;QD=10.87;ReadPosRankSum=-0.321;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:1,28:30:42:359,42,0
chrI	189669	.	A	G	300	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=10.34;SB=-7.612e-03	GT:AD:DP:GQ:PL	1/1:0,29:29:39:333,39,0
chrI	189689	.	C	T	246	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=9.46;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:0,26:26:33:279,33,0
chrI	189690	.	G	A	273	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=10.50;SB=-8.699e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:36:306,36,0
chrI	189729	.	C	A	124.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=0;QD=6.90;SB=-1.410e-01	GT:AD:DP:GQ:PL	1/1:0,18:18:18:157,18,0
chrI	189735	.	T	C	42.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;QD=3.31;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:75,9,0
chrI	189736	.	C	A	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;QD=3.69;SB=-9.474e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:80,9,0
chrI	189740	.	A	G	20.80	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;QD=1.60;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,13:13:6:52,6,0
chrI	206414	.	T	C	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=1.11;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:0,17:17:6:50,6,0
chrI	206417	.	T	C	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=0.99;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:0,19:19:6:50,6,0
chrI	206450	.	C	A	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=25.40;MQ0=0;QD=0.90;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,20:22:6:51,6,0
chrI	206465	.	C	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=0;MQRankSum=0.199;QD=1.20;ReadPosRankSum=0.066;SB=-1.442e+00	GT:AD:DP:GQ:PL	1/1:2,17:19:6:54,6,0
chrI	206468	.	T	C	19.81	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.061;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.84;MQ0=0;MQRankSum=0.589;QD=1.80;ReadPosRankSum=2.003;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:2,9:11:6:51,6,0
chrI	206470	.	A	T	20.80	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=5.7950;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;MQRankSum=0.000;QD=2.08;ReadPosRankSum=1.393;SB=2.21	GT:AD:DP:GQ:PL	1/1:1,9:10:6:52,6,0
chrI	206675	.	A	T	682	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=2;QD=17.05;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:715,81,0
chrI	206785	.	T	A	38.97	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.90;MQ0=0;QD=6.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:9:71,9,0
chrI	206799	.	T	G	36.97	filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=0;QD=12.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:69,9,0
chrI	206812	.	C	T	36.97	filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=0;QD=12.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:69,9,0
chrI	206818	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:43,6,0
chrI	220048	.	C	G	45.97	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.29;MQ0=27;QD=1.15;SB=-5.147e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:9:78,9,0
chrI	220518	.	C	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=3;QD=20.09;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1439,162,0
chrI	220529	.	G	A	1129	filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.57;MQ0=10;QD=17.11;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1162,135,0
chrI	222339	.	G	A	288	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.65;MQ0=18;QD=9.29;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:36:321,36,0
chrI	222506	.	C	T	201.01	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=12.65;MQ0=40;QD=3.72;SB=-9.489e+01	GT:AD:DP:GQ:PL	1/1:1,52:54:27:234,27,0
chrI	222605	.	T	C	1574	filter	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=4;QD=14.31;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1607,192,0
chrI	222857	.	T	C	226	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.17;MQ0=39;QD=4.26;SB=-9.995e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:30:259,30,0
chrI	223259	.	G	A	122.13	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=12.75;MQ0=27;QD=2.98;SB=-4.888e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:18:155,18,0
chrI	223320	.	G	A	230	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=15;QD=6.22;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:30:263,30,0
chrI	223325	.	G	A	247	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.6984;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=13;QD=6.86;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:33:280,33,0
chrI	223338	.	A	G	310	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=5;QD=10.33;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:39:343,39,0
chrI	223350	.	C	T	332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.9510;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;MQRankSum=0.706;QD=11.86;ReadPosRankSum=-0.321;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:1,26:28:42:365,42,0
chrI	223359	.	A	G	219	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=5.9644;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=8.11;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:30:252,30,0
chrI	223372	.	A	G	222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=33;Dels=0.00;FS=3.212;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;MQRankSum=-1.999;QD=6.73;ReadPosRankSum=1.773;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:2,31:33:30:255,30,0
chrI	223407	.	T	C	196.01	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=1;QD=5.44;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:27:229,27,0
chrI	223446	.	G	A	232	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=2;QD=6.44;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:30:265,30,0
chrI	223452	.	A	G	251	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=2;QD=6.44;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:33:284,33,0
chrI	223468	.	T	C	120.13	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=4;QD=4.14;SB=-9.914e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:18:153,18,0
chrI	223469	.	A	C	118.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=4;MQRankSum=-0.069;QD=4.07;ReadPosRankSum=1.595;SB=-9.712e+01	GT:AD:DP:GQ:PL	1/1:1,28:29:18:151,18,0
chrI	223537	.	T	C	69.51	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=26;QD=1.62;SB=-7.839e+01	GT:AD:DP:GQ:PL	1/1:0,42:43:12:102,12,0
chrI	223566	.	C	T	123.13	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.79;MQ0=27;QD=3.16;SB=-5.163e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:18:156,18,0
chrI	223748	.	A	G	1729	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=16;MQRankSum=0.000;QD=17.64;ReadPosRankSum=1.690;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:1,96:98:99:1762,210,0
chrI	223972	.	A	G	395	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.44;MQ0=46;QD=5.49;SB=-6.584e-03	GT:AD:DP:GQ:PL	1/1:0,71:72:51:428,51,0
chrI	224014	.	T	A	882	filter	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=46;QD=9.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:915,102,0
chrI	224034	.	G	A	640	filter	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.64;MQ0=46;QD=7.71;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,83:83:75:673,75,0
chrI	224418	.	C	T	169.03	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.37;MQ0=23;QD=5.28;SB=-2.367e-02	GT:AD:DP:GQ:PL	1/1:0,32:32:24:202,24,0
chrI	224430	.	T	C	119.13	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.16;MQ0=23;QD=3.97;SB=-7.359e-02	GT:AD:DP:GQ:PL	1/1:0,29:30:18:152,18,0
chrI	224784	.	A	G	359	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=20;QD=8.55;SB=-2.340e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:45:392,45,0
chrI	224816	.	G	A	121.13	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.77;MQ0=21;QD=3.67;SB=-1.061e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:18:154,18,0
chrI	224831	.	T	A	48.97	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.84;MQ0=21;QD=2.04;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:9:81,9,0
chrI	225027	.	C	T	74.51	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.41;MQ0=53;QD=1.26;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:12:107,12,0
chrI	225059	.	C	T	234	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.59;MQ0=43;QD=3.97;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:30:267,30,0
chrI	225098	.	A	G	177.27	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;DP=32;Dels=0.00;FS=8.475;HaplotypeScore=5.6880;MLEAC=1;MLEAF=0.500;MQ=31.80;MQ0=8;MQRankSum=1.528;QD=5.54;ReadPosRankSum=-0.335;SB=-8.427e+01	GT:AD:DP:GQ:PL	0/1:11,21:32:9:207,0,9
chrI	225189	.	A	G	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.77;MQ0=30;QD=0.53;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:32:6:48,6,0
chrI	225203	.	A	C	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.11;MQ0=27;QD=0.68;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,29:29:6:51,6,0
chrI	225364	.	C	T	455	filter	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.88;MQ0=43;QD=5.48;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:57:488,57,0
chrI	225760	.	C	G	1490	filter	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=14;QD=17.13;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1523,180,0
chrI	226095	.	C	T	552	filter	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.33;MQ0=18;QD=7.77;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:66:585,66,0
chrI	227620	.	C	T	76.51	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.24;MQ0=5;QD=6.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,12:12:12:109,12,0
chrI	227665	.	G	A	45.97	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.10;MQ0=5;QD=4.18;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,11:11:9:78,9,0
chrI	228151	.	C	T	100.26	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=8;QD=6.27;SB=-7.730e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:15:133,15,0
chrI	228173	.	T	C	93.26	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.99;MQ0=9;QD=5.49;SB=-7.430e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:15:126,15,0
chrI	228199	.	C	A	95.26	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.48;MQ0=8;QD=6.35;SB=-4.876e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:15:128,15,0
chrI	228706	.	C	T	120.13	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=1;QD=8.58;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,14:14:18:153,18,0
chrI	228756	.	A	G	45.97	filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.14;MQ0=4;QD=5.75;SB=-2.621e+01	GT:AD:DP:GQ:PL	1/1:0,8:8:9:78,9,0
chrI	228767	.	T	C	40.97	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.41;MQ0=3;QD=4.55;SB=-2.121e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:73,9,0
chrI	229086	.	C	T	44.97	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=3.00;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:9:77,9,0
chrI	229092	.	A	G	46.97	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=3.13;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:9:79,9,0
chrI	229098	.	C	G	42.97	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=2.86;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:9:75,9,0
chrI	229104	.	C	A	49.97	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;QD=3.33;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:9:82,9,0
chrII	112	.	T	C	1673	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=7.197;DP=257;Dels=0.00;FS=4.675;HaplotypeScore=31.5736;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=4;MQRankSum=0.567;QD=6.51;ReadPosRankSum=11.347;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:61,196:257:99:1706,192,0
chrII	121	.	T	C	9229.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=9.132;DP=445;Dels=0.00;FS=4.246;HaplotypeScore=129.5430;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=10;MQRankSum=2.374;QD=20.74;ReadPosRankSum=9.779;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:39,406:445:99:9229,1011,0
chrII	173	.	A	G	11913.01	filter	AC=2;AF=1.00;AN=2;DP=441;Dels=0.00;FS=0.000;HaplotypeScore=3.4379;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=7;QD=27.01;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,440:441:99:11913,1267,0
chrII	200	.	T	A	8642.01	filter	AC=2;AF=1.00;AN=2;DP=375;Dels=0.00;FS=0.000;HaplotypeScore=7.0334;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=3;QD=23.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,375:375:99:8642,1069,0
chrII	356	.	T	C	32.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;DP=189;Dels=0.00;FS=7.832;HaplotypeScore=8.6961;MLEAC=1;MLEAF=0.500;MQ=10.68;MQ0=130;MQRankSum=0.993;QD=0.17;ReadPosRankSum=0.286;SB=-2.750e+00	GT:AD:DP:GQ:PL	0/1:184,5:189:62:62,0,349
chrII	358	.	C	T	21.04	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;DP=193;Dels=0.00;FS=16.199;HaplotypeScore=10.2734;MLEAC=1;MLEAF=0.500;MQ=11.26;MQ0=126;MQRankSum=0.238;QD=0.11;ReadPosRankSum=-1.786;SB=-2.750e+00	GT:AD:DP:GQ:PL	0/1:182,11:193:51:51,0,389
chrII	376	.	T	C	149.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;DP=147;Dels=0.00;FS=8.326;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=15.94;MQ0=57;MQRankSum=0.725;QD=1.01;ReadPosRankSum=-1.548;SB=-3.015e+00	GT:AD:DP:GQ:PL	0/1:132,15:147:99:179,0,536
chrII	394	.	T	C	718.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.545;DP=119;Dels=0.00;FS=268.982;HaplotypeScore=18.1152;MLEAC=1;MLEAF=0.500;MQ=20.89;MQ0=11;MQRankSum=8.931;QD=6.03;ReadPosRankSum=-4.187;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:69,50:119:99:748,0,180
chrII	400	.	C	T	136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DP=133;Dels=0.00;FS=25.890;HaplotypeScore=35.3667;MLEAC=1;MLEAF=0.500;MQ=21.89;MQ0=11;MQRankSum=-1.289;QD=1.02;ReadPosRankSum=1.993;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:116,16:133:99:166,0,868
chrII	430	.	G	A	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;DP=167;Dels=0.00;FS=47.560;HaplotypeScore=6.0190;MLEAC=1;MLEAF=0.500;MQ=24.74;MQ0=12;MQRankSum=-3.379;QD=0.11;ReadPosRankSum=-1.367;SB=-3.015e+00	GT:AD:DP:GQ:PL	0/1:151,16:167:48:48,0,1632
chrII	465	.	T	C	2743	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=8.177;DP=195;Dels=0.00;FS=319.902;HaplotypeScore=2.3056;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=3;MQRankSum=8.189;QD=14.07;ReadPosRankSum=7.354;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:26,169:195:99:2776,300,0
chrII	657	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=238;Dels=0.00;FS=5.798;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=2.47;MQ0=219;MQRankSum=2.627;QD=0.05;ReadPosRankSum=-1.733;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:235,3:238:6:43,6,0
chrII	673	.	G	A	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;DP=228;Dels=0.00;FS=2.793;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.90;MQ0=205;MQRankSum=2.693;QD=0.05;ReadPosRankSum=0.320;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:224,4:228:6:43,6,0
chrII	700	.	C	T	32.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.131;DP=211;Dels=0.00;FS=2.576;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.63;MQ0=181;MQRankSum=3.131;QD=0.16;ReadPosRankSum=1.739;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:203,5:211:9:65,9,0
chrII	728	.	C	T	42.22	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.15;MQ0=129;MQRankSum=3.391;QD=0.25;ReadPosRankSum=0.284;SB=-2.962e+00	GT:AD:DP:GQ:PL	0/1:166,5:172:10:72,0,10
chrII	730	.	A	C	42.22	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.30;MQ0=125;MQRankSum=3.433;QD=0.24;ReadPosRankSum=0.535;SB=-2.962e+00	GT:AD:DP:GQ:PL	0/1:168,5:173:10:72,0,10
chrII	732	.	C	G	42.22	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=5.40;MQ0=120;MQRankSum=3.452;QD=0.25;ReadPosRankSum=0.578;SB=-2.962e+00	GT:AD:DP:GQ:PL	0/1:162,5:169:10:72,0,10
chrII	745	.	T	C	30.12	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;DP=138;Dels=0.00;FS=2.409;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=6.50;MQ0=85;MQRankSum=3.804;QD=0.22;ReadPosRankSum=-0.407;SB=-2.858e+00	GT:AD:DP:GQ:PL	0/1:132,6:138:13:60,0,13
chrII	748	.	C	T	29.12	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=6.39;MQ0=84;MQRankSum=3.507;QD=0.21;ReadPosRankSum=0.435;SB=-2.608e+00	GT:AD:DP:GQ:PL	0/1:129,5:137:13:59,0,13
chrII	753	.	A	C	30.12	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=6.88;MQ0=78;MQRankSum=3.832;QD=0.23;ReadPosRankSum=-0.182;SB=-2.989e+00	GT:AD:DP:GQ:PL	0/1:125,6:131:13:60,0,13
chrII	785	.	C	T	33.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.937;DP=83;Dels=0.00;FS=29.629;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=9.32;MQ0=38;MQRankSum=0.990;QD=0.40;ReadPosRankSum=-0.520;SB=-2.215e+01	GT:AD:DP:GQ:PL	0/1:66,15:83:11:63,0,11
chrII	1231	.	T	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.231;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.51;MQ0=32;MQRankSum=1.231;QD=0.62;ReadPosRankSum=-0.358;SB=1.34	GT:AD:DP:GQ:PL	1/1:26,11:37:6:54,6,0
chrII	1345	.	T	A	21.09	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=4.90;MQ0=99;MQRankSum=2.192;QD=0.18;ReadPosRankSum=1.528;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:114,4:118:16:51,0,16
chrII	1507	.	G	A	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DP=111;Dels=0.00;FS=69.769;HaplotypeScore=8.2148;MLEAC=1;MLEAF=0.500;MQ=8.29;MQ0=53;MQRankSum=5.335;QD=0.43;ReadPosRankSum=-3.015;SB=-5.888e+01	GT:AD:DP:GQ:PL	0/1:91,20:111:38:78,0,38
chrII	1596	.	C	T	172.54	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.564;DP=102;Dels=0.00;FS=15.926;HaplotypeScore=10.5562;MLEAC=2;MLEAF=1.00;MQ=11.59;MQ0=57;MQRankSum=2.299;QD=1.69;ReadPosRankSum=4.033;SB=-9.313e+01	GT:AD:DP:GQ:PL	1/1:76,26:102:2:202,2,0
chrII	1606	.	G	A	112.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;DP=99;Dels=0.00;FS=15.160;HaplotypeScore=8.5533;MLEAC=1;MLEAF=0.500;MQ=11.53;MQ0=57;MQRankSum=2.611;QD=1.13;ReadPosRankSum=3.988;SB=-7.001e+01	GT:AD:DP:GQ:PL	0/1:82,17:99:78:142,0,78
chrII	1615	.	A	C	111.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DP=99;Dels=0.00;FS=15.160;HaplotypeScore=3.6948;MLEAC=1;MLEAF=0.500;MQ=11.61;MQ0=57;MQRankSum=2.514;QD=1.12;ReadPosRankSum=0.016;SB=-7.201e+01	GT:AD:DP:GQ:PL	0/1:83,16:99:76:141,0,76
chrII	1816	.	G	A	88.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;DP=47;Dels=0.00;FS=1.453;HaplotypeScore=6.5666;MLEAC=1;MLEAF=0.500;MQ=18.23;MQ0=14;MQRankSum=0.131;QD=1.87;ReadPosRankSum=-1.478;SB=-1.200e+02	GT:AD:DP:GQ:PL	0/1:20,27:47:99:118,0,153
chrII	1850	.	G	A	98.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.222;DP=93;Dels=0.00;FS=21.445;HaplotypeScore=38.5605;MLEAC=1;MLEAF=0.500;MQ=15.22;MQ0=13;MQRankSum=4.024;QD=1.05;ReadPosRankSum=6.145;SB=-1.040e+02	GT:AD:DP:GQ:PL	0/1:66,26:93:99:128,0,154
chrII	1851	.	T	A	101.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;DP=100;Dels=0.00;FS=50.003;HaplotypeScore=37.7718;MLEAC=1;MLEAF=0.500;MQ=14.68;MQ0=20;MQRankSum=3.498;QD=1.01;ReadPosRankSum=2.311;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,6:100:99:131,0,150
chrII	1852	.	G	A	102.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.822;DP=102;Dels=0.00;FS=50.003;HaplotypeScore=47.0299;MLEAC=1;MLEAF=0.500;MQ=14.53;MQ0=22;MQRankSum=3.462;QD=1.00;ReadPosRankSum=2.329;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:96,6:102:99:132,0,148
chrII	1855	.	G	A	87.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;DP=109;Dels=0.00;FS=47.162;HaplotypeScore=31.3612;MLEAC=1;MLEAF=0.500;MQ=14.06;MQ0=29;MQRankSum=3.433;QD=0.80;ReadPosRankSum=2.088;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,6:109:99:117,0,151
chrII	1856	.	G	T	101.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;DP=111;Dels=0.00;FS=41.974;HaplotypeScore=31.3612;MLEAC=1;MLEAF=0.500;MQ=13.93;MQ0=31;MQRankSum=2.861;QD=0.91;ReadPosRankSum=1.839;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:103,7:111:99:131,0,152
chrII	1887	.	T	A	14.20	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.809;DP=89;Dels=0.00;FS=25.197;HaplotypeScore=3.6780;MLEAC=1;MLEAF=0.500;MQ=11.63;MQ0=26;MQRankSum=4.655;QD=0.16;ReadPosRankSum=-4.994;SB=-2.063e+00	GT:AD:DP:GQ:PL	0/1:79,10:89:20:44,0,20
chrII	1888	.	G	A	14.21	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;DP=85;Dels=0.00;FS=32.110;HaplotypeScore=3.6780;MLEAC=1;MLEAF=0.500;MQ=11.38;MQ0=26;MQRankSum=3.749;QD=0.17;ReadPosRankSum=-4.000;SB=-2.076e+00	GT:AD:DP:GQ:PL	0/1:79,6:85:18:44,0,18
chrII	5598	.	C	A	80.51	filter	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=7.41;MQ0=87;QD=0.85;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:78,16:95:12:113,12,0
chrII	5644	.	C	A	1334	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=12.0024;MLEAC=2;MLEAF=1.00;MQ=24.45;MQ0=12;QD=18.27;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,68:73:99:1367,147,0
chrII	6070	.	A	C	88.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;DP=146;Dels=0.00;FS=10.539;HaplotypeScore=36.3213;MLEAC=1;MLEAF=0.500;MQ=30.45;MQ0=7;MQRankSum=-3.704;QD=0.60;ReadPosRankSum=-2.504;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:125,20:146:99:118,0,222
chrII	6072	.	T	C	320.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;DP=173;Dels=0.00;FS=97.661;HaplotypeScore=47.0117;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=14;MQRankSum=5.032;QD=1.85;ReadPosRankSum=1.791;SB=-1.830e+02	GT:AD:DP:GQ:PL	0/1:38,135:173:99:350,0,263
chrII	6074	.	T	C	296.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;DP=181;Dels=0.00;FS=166.922;HaplotypeScore=49.1844;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=14;MQRankSum=5.702;QD=1.64;ReadPosRankSum=0.500;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:50,131:181:99:326,0,301
chrII	6116	.	T	A	141.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=285;Dels=0.00;FS=18.174;HaplotypeScore=35.8742;MLEAC=1;MLEAF=0.500;MQ=27.05;MQ0=17;MQRankSum=-3.937;QD=0.49;ReadPosRankSum=4.598;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:231,54:285:99:171,0,1510
chrII	6129	.	G	T	34.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.828;DP=281;Dels=0.00;FS=6.142;HaplotypeScore=36.5460;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=18;MQRankSum=-1.446;QD=0.12;ReadPosRankSum=1.040;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:256,20:281:64:64,0,1750
chrII	6157	.	T	C	1098.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;DP=176;Dels=0.01;FS=3.150;HaplotypeScore=34.4566;MLEAC=1;MLEAF=0.500;MQ=23.53;MQ0=17;MQRankSum=0.883;QD=6.24;ReadPosRankSum=2.365;SB=-5.600e+02	GT:AD:DP:GQ:PL	0/1:59,114:174:99:1128,0,219
chrII	6175	.	T	C	1455	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.909;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1636;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=6;MQRankSum=1.083;QD=15.99;ReadPosRankSum=1.689;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,85:91:99:1488,162,0
chrII	6208	.	T	A	476.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DP=42;Dels=0.00;FS=18.597;HaplotypeScore=4.7286;MLEAC=1;MLEAF=0.500;MQ=29.88;MQ0=3;MQRankSum=2.602;QD=11.33;ReadPosRankSum=3.332;SB=-2.300e+02	GT:AD:DP:GQ:PL	0/1:13,29:42:87:506,0,87
chrII	6219	.	A	T	21.04	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;DP=39;Dels=0.00;FS=17.269;HaplotypeScore=11.2820;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=1;MQRankSum=-1.957;QD=0.54;ReadPosRankSum=-3.193;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,9:39:51:51,0,522
chrII	6228	.	C	G	435	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=9.5317;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=2;QD=13.59;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:1,28:32:51:468,51,0
chrII	6295	.	C	A	46.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;DP=18;Dels=0.00;FS=39.035;HaplotypeScore=9.6245;MLEAC=1;MLEAF=0.500;MQ=25.89;MQ0=2;MQRankSum=-0.054;QD=2.56;ReadPosRankSum=-1.139;SB=-2.881e+00	GT:AD:DP:GQ:PL	0/1:12,6:18:76:76,0,158
chrII	6301	.	G	T	75.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=19;Dels=0.00;FS=10.296;HaplotypeScore=4.8078;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=3;MQRankSum=0.113;QD=3.95;ReadPosRankSum=3.059;SB=-6.515e-03	GT:AD:DP:GQ:PL	0/1:14,5:19:99:105,0,129
chrII	6302	.	A	G	119.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;DP=19;Dels=0.00;FS=39.035;HaplotypeScore=4.8078;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=3;MQRankSum=-0.271;QD=6.26;ReadPosRankSum=1.681;SB=-2.982e+00	GT:AD:DP:GQ:PL	0/1:7,12:19:81:149,0,81
chrII	6335	.	C	T	89.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=35;Dels=0.00;FS=3.522;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=12.94;MQ0=26;MQRankSum=2.219;QD=2.54;ReadPosRankSum=2.219;SB=0.205	GT:AD:DP:GQ:PL	0/1:29,6:35:34:119,0,34
chrII	6379	.	A	T	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.7297;MLEAC=2;MLEAF=1.00;MQ=11.16;MQ0=26;QD=0.51;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,49:49:6:56,6,0
chrII	6395	.	C	A	14.18	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;DP=58;Dels=0.00;FS=45.313;HaplotypeScore=7.8755;MLEAC=1;MLEAF=0.500;MQ=13.41;MQ0=26;MQRankSum=-2.839;QD=0.24;ReadPosRankSum=2.456;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:37,21:58:44:44,0,65
chrII	6396	.	T	G	14.18	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;DP=60;Dels=0.00;FS=32.019;HaplotypeScore=9.4529;MLEAC=1;MLEAF=0.500;MQ=13.42;MQ0=26;MQRankSum=-2.532;QD=0.24;ReadPosRankSum=2.983;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:39,21:60:44:44,0,68
chrII	6402	.	G	C	11.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;DP=63;Dels=0.00;FS=16.843;HaplotypeScore=5.5165;MLEAC=1;MLEAF=0.500;MQ=14.54;MQ0=22;MQRankSum=1.016;QD=0.18;ReadPosRankSum=0.219;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:57,5:63:41:41,0,67
chrII	6434	.	C	T	91.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.919;DP=114;Dels=0.00;FS=38.631;HaplotypeScore=85.8668;MLEAC=1;MLEAF=0.500;MQ=21.01;MQ0=8;MQRankSum=2.634;QD=0.80;ReadPosRankSum=-3.658;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:96,18:114:99:121,0,619
chrII	6435	.	G	A	182.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.653;DP=113;Dels=0.00;FS=240.883;HaplotypeScore=115.0781;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=8;MQRankSum=-0.450;QD=1.61;ReadPosRankSum=2.632;SB=-3.012e+00	GT:AD:DP:GQ:PL	0/1:70,42:113:99:212,0,520
chrII	6437	.	C	T	151.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.405;DP=113;Dels=0.00;FS=258.614;HaplotypeScore=115.0781;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=8;MQRankSum=-0.130;QD=1.34;ReadPosRankSum=2.944;SB=-3.012e+00	GT:AD:DP:GQ:PL	0/1:72,41:113:99:181,0,531
chrII	6438	.	G	C	153.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.075;DP=114;Dels=0.00;FS=245.306;HaplotypeScore=116.8606;MLEAC=1;MLEAF=0.500;MQ=21.18;MQ0=8;MQRankSum=-0.570;QD=1.34;ReadPosRankSum=3.061;SB=-3.012e+00	GT:AD:DP:GQ:PL	0/1:71,41:114:99:183,0,537
chrII	6440	.	G	C,T	792.01	SnpCluster;filter	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.636;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=62.0601;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.96;MQ0=8;MQRankSum=-0.160;QD=6.83;ReadPosRankSum=1.668;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/2:1,76,39:116:99:852,244,163,608,0,578
chrII	6441	.	C	T	63.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.855;DP=118;Dels=0.00;FS=64.181;HaplotypeScore=136.1902;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=8;MQRankSum=-0.153;QD=0.53;ReadPosRankSum=1.542;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,27:118:93:93,0,669
chrII	6442	.	C	T	178.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;DP=119;Dels=0.00;FS=258.496;HaplotypeScore=136.1902;MLEAC=1;MLEAF=0.500;MQ=20.96;MQ0=8;MQRankSum=-0.736;QD=1.50;ReadPosRankSum=3.465;SB=-3.012e+00	GT:AD:DP:GQ:PL	0/1:78,41:119:99:208,0,530
chrII	6444	.	A	G	191.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.687;DP=122;Dels=0.00;FS=220.551;HaplotypeScore=136.1902;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=9;MQRankSum=0.495;QD=1.57;ReadPosRankSum=2.972;SB=-3.012e+00	GT:AD:DP:GQ:PL	0/1:78,44:122:99:221,0,523
chrII	6450	.	T	C	168.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;DP=166;Dels=0.00;FS=323.980;HaplotypeScore=114.1530;MLEAC=1;MLEAF=0.500;MQ=22.06;MQ0=10;MQRankSum=-0.385;QD=1.01;ReadPosRankSum=2.829;SB=-2.962e+00	GT:AD:DP:GQ:PL	0/1:110,56:166:99:198,0,453
chrII	6457	.	C	A	262.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.094;DP=172;Dels=0.00;FS=242.981;HaplotypeScore=102.2763;MLEAC=1;MLEAF=0.500;MQ=22.36;MQ0=13;MQRankSum=-1.079;QD=1.52;ReadPosRankSum=2.333;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:100,72:172:99:292,0,650
chrII	6461	.	T	A	236.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.793;DP=180;Dels=0.00;FS=156.100;HaplotypeScore=54.7577;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=13;MQRankSum=3.399;QD=1.31;ReadPosRankSum=-3.091;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:122,55:180:99:266,0,670
chrII	6464	.	T	A	222.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;DP=186;Dels=0.00;FS=162.318;HaplotypeScore=52.9932;MLEAC=1;MLEAF=0.500;MQ=22.45;MQ0=13;MQRankSum=3.799;QD=1.19;ReadPosRankSum=-2.698;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:132,54:186:99:252,0,690
chrII	6472	.	A	G	198.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.193;DP=203;Dels=0.00;FS=147.372;HaplotypeScore=10.9276;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=12;MQRankSum=3.112;QD=0.98;ReadPosRankSum=-1.022;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:143,59:203:99:228,0,686
chrII	6473	.	C	A	176.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.007;DP=204;Dels=0.00;FS=186.893;HaplotypeScore=11.5059;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=12;MQRankSum=2.758;QD=0.86;ReadPosRankSum=-1.961;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:153,51:204:99:206,0,728
chrII	6475	.	T	C	166.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;DP=210;Dels=0.00;FS=196.877;HaplotypeScore=11.5059;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=12;MQRankSum=2.988;QD=0.79;ReadPosRankSum=-1.941;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:158,51:210:99:196,0,744
chrII	6480	.	C	T	186.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.052;DP=218;Dels=0.00;FS=214.784;HaplotypeScore=34.6502;MLEAC=1;MLEAF=0.500;MQ=22.64;MQ0=12;MQRankSum=3.645;QD=0.85;ReadPosRankSum=-3.569;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:167,51:218:99:216,0,756
chrII	6488	.	G	A	270.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=8.351;DP=220;Dels=0.00;FS=295.006;HaplotypeScore=39.6048;MLEAC=1;MLEAF=0.500;MQ=23.13;MQ0=11;MQRankSum=1.088;QD=1.23;ReadPosRankSum=-5.089;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:148,60:220:99:300,0,690
chrII	6490	.	A	G	95.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.960;DP=224;Dels=0.00;FS=211.780;HaplotypeScore=39.6048;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=11;MQRankSum=4.032;QD=0.42;ReadPosRankSum=-8.481;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:178,46:224:99:125,0,974
chrII	6492	.	C	T	94.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=225;Dels=0.00;FS=214.950;HaplotypeScore=41.6876;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=11;MQRankSum=4.043;QD=0.42;ReadPosRankSum=-9.020;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:179,46:225:99:124,0,1020
chrII	6510	.	A	T	945.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;DP=195;Dels=0.00;FS=210.899;HaplotypeScore=41.2111;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=7;MQRankSum=0.558;QD=4.85;ReadPosRankSum=3.233;SB=-2.150e+02	GT:AD:DP:GQ:PL	0/1:29,166:195:99:975,0,118
chrII	6516	.	T	C	627.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;DP=197;Dels=0.00;FS=296.826;HaplotypeScore=68.8102;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=4;MQRankSum=1.438;QD=3.18;ReadPosRankSum=5.606;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:51,146:197:99:657,0,99
chrII	6526	.	C	T	673.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.089;DP=188;Dels=0.00;FS=1.413;HaplotypeScore=22.9196;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=4;MQRankSum=1.401;QD=3.58;ReadPosRankSum=2.081;SB=-1.970e+02	GT:AD:DP:GQ:PL	0/1:29,158:188:99:703,0,118
chrII	6533	.	A	T	1043	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.8892;MLEAC=2;MLEAF=1.00;MQ=23.92;MQ0=4;QD=5.55;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:0,188:188:99:1076,120,0
chrII	6536	.	C	A	1012	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=37.5503;MLEAC=2;MLEAF=1.00;MQ=24.10;MQ0=4;QD=5.69;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,178:178:99:1045,117,0
chrII	6537	.	A	G	953	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;DP=179;Dels=0.00;FS=2.190;HaplotypeScore=14.7692;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;MQRankSum=3.066;QD=5.32;ReadPosRankSum=0.575;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:14,165:179:89:986,89,0
chrII	6588	.	T	A	374.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.126;DP=156;Dels=0.00;FS=1.546;HaplotypeScore=56.2209;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=0;MQRankSum=0.445;QD=2.40;ReadPosRankSum=7.056;SB=-1.180e+02	GT:AD:DP:GQ:PL	0/1:65,91:156:99:404,0,278
chrII	6589	.	T	A	395.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;DP=149;Dels=0.00;FS=27.048;HaplotypeScore=43.4517;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=0.163;QD=2.65;ReadPosRankSum=6.719;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,86:149:99:425,0,153
chrII	6592	.	C	A	407.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.397;DP=145;Dels=0.00;FS=28.303;HaplotypeScore=23.6884;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=-0.002;QD=2.81;ReadPosRankSum=8.728;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,86:145:99:437,0,100
chrII	6593	.	G	T	407.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.807;DP=142;Dels=0.00;FS=25.051;HaplotypeScore=55.7739;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=3.323;QD=2.87;ReadPosRankSum=8.259;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,78:142:99:437,0,110
chrII	6595	.	A	C	391.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.057;DP=141;Dels=0.00;FS=18.091;HaplotypeScore=76.0478;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=2.385;QD=2.77;ReadPosRankSum=8.170;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,78:141:99:421,0,155
chrII	6603	.	C	T	200.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.150;DP=135;Dels=0.00;FS=18.460;HaplotypeScore=49.5826;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=1;MQRankSum=7.230;QD=1.48;ReadPosRankSum=5.302;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,75:135:99:230,0,161
chrII	6605	.	C	T	225.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.334;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=30.5843;MLEAC=1;MLEAF=0.500;MQ=24.04;MQ0=1;MQRankSum=6.486;QD=1.73;ReadPosRankSum=5.245;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,79:130:99:255,0,155
chrII	6607	.	C	G	230.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=23.9033;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=1;MQRankSum=7.466;QD=1.83;ReadPosRankSum=3.937;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:46,80:126:32:260,0,32
chrII	6609	.	A	T	228.64	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.452;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=41.3670;MLEAC=2;MLEAF=1.00;MQ=23.66;MQ0=1;MQRankSum=8.091;QD=1.81;ReadPosRankSum=3.904;SB=2.37	GT:AD:DP:GQ:PL	1/1:46,74:126:11:261,11,0
chrII	6613	.	C	G	218.64	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=5.740;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=46.7861;MLEAC=2;MLEAF=1.00;MQ=23.66;MQ0=1;MQRankSum=8.173;QD=1.74;ReadPosRankSum=3.187;SB=2.36	GT:AD:DP:GQ:PL	1/1:46,74:126:11:251,11,0
chrII	6618	.	C	G	195.64	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.563;DP=117;Dels=0.00;FS=2.904;HaplotypeScore=49.7097;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=1;MQRankSum=8.417;QD=1.67;ReadPosRankSum=2.859;SB=-2.464e+01	GT:AD:DP:GQ:PL	1/1:48,68:117:11:228,11,0
chrII	6619	.	T	A	251	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=5.788;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=48.9210;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=1;MQRankSum=4.680;QD=2.15;ReadPosRankSum=4.814;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:26,91:117:36:284,36,0
chrII	6620	.	A	G	206.33	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.762;DP=116;Dels=0.00;FS=8.209;HaplotypeScore=45.2617;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=1;MQRankSum=7.728;QD=1.78;ReadPosRankSum=2.043;SB=2.68	GT:AD:DP:GQ:PL	1/1:46,70:116:14:239,14,0
chrII	6621	.	T	C	163.19	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.637;DP=117;Dels=0.00;FS=8.016;HaplotypeScore=52.7325;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=1;MQRankSum=7.619;QD=1.39;ReadPosRankSum=2.155;SB=1.81	GT:AD:DP:GQ:PL	1/1:47,69:117:8:195,8,0
chrII	6624	.	C	T	224.33	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.682;DP=122;Dels=0.00;FS=8.850;HaplotypeScore=71.3464;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=1;MQRankSum=7.972;QD=1.84;ReadPosRankSum=-0.558;SB=0.177	GT:AD:DP:GQ:PL	1/1:45,77:122:14:257,14,0
chrII	6626	.	C	T	208.34	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.398;DP=126;Dels=0.00;FS=6.561;HaplotypeScore=77.8631;MLEAC=1;MLEAF=0.500;MQ=23.93;MQ0=1;MQRankSum=8.034;QD=1.65;ReadPosRankSum=1.585;SB=-3.377e-01	GT:AD:DP:GQ:PL	0/1:60,66:126:8:238,0,8
chrII	6631	.	A	G	226.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.936;DP=158;Dels=0.00;FS=1.946;HaplotypeScore=52.3042;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=2;MQRankSum=7.768;QD=1.43;ReadPosRankSum=-2.304;SB=-5.501e+01	GT:AD:DP:GQ:PL	0/1:62,96:158:32:256,0,32
chrII	6633	.	G	A	226.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.276;DP=160;Dels=0.00;FS=16.117;HaplotypeScore=49.7485;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=2;MQRankSum=7.787;QD=1.41;ReadPosRankSum=-2.258;SB=-6.526e-03	GT:AD:DP:GQ:PL	0/1:65,94:160:55:256,0,55
chrII	6642	.	G	T	205.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.552;DP=179;Dels=0.01;FS=22.804;HaplotypeScore=46.8440;MLEAC=1;MLEAF=0.500;MQ=27.75;MQ0=3;MQRankSum=5.727;QD=1.15;ReadPosRankSum=-2.352;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:77,100:177:99:235,0,242
chrII	6661	.	A	G	54.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;DP=184;Dels=0.00;FS=21.685;HaplotypeScore=38.3037;MLEAC=1;MLEAF=0.500;MQ=30.39;MQ0=3;MQRankSum=2.813;QD=0.29;ReadPosRankSum=0.245;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,86:184:84:84,0,695
chrII	6663	.	C	A	115.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;DP=184;Dels=0.00;FS=21.457;HaplotypeScore=39.6416;MLEAC=1;MLEAF=0.500;MQ=30.61;MQ0=3;MQRankSum=2.601;QD=0.63;ReadPosRankSum=0.317;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:98,86:184:99:145,0,745
chrII	6705	.	C	T	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;DP=118;Dels=0.00;FS=20.678;HaplotypeScore=7.6151;MLEAC=1;MLEAF=0.500;MQ=36.32;MQ0=9;MQRankSum=-2.999;QD=0.10;ReadPosRankSum=0.441;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,36:118:42:42,0,1236
chrII	6880	.	C	A	989.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;DP=277;Dels=0.00;FS=31.971;HaplotypeScore=39.8749;MLEAC=1;MLEAF=0.500;MQ=34.67;MQ0=3;MQRankSum=-2.281;QD=3.57;ReadPosRankSum=0.518;SB=-1.800e+02	GT:AD:DP:GQ:PL	0/1:187,86:277:99:1019,0,2852
chrII	6958	.	A	G	1693.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.989;DP=301;Dels=0.00;FS=5.416;HaplotypeScore=49.6803;MLEAC=1;MLEAF=0.500;MQ=35.15;MQ0=0;MQRankSum=-3.481;QD=5.62;ReadPosRankSum=0.971;SB=-5.610e+02	GT:AD:DP:GQ:PL	0/1:178,121:301:99:1723,0,2678
chrII	6965	.	T	A	1443.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;DP=292;Dels=0.00;FS=38.522;HaplotypeScore=74.3912;MLEAC=1;MLEAF=0.500;MQ=34.60;MQ0=0;MQRankSum=-5.231;QD=4.94;ReadPosRankSum=-0.001;SB=-4.930e+02	GT:AD:DP:GQ:PL	0/1:151,101:292:99:1473,0,2438
chrII	7006	.	C	G	1124.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=231;Dels=0.00;FS=13.849;HaplotypeScore=28.7849;MLEAC=1;MLEAF=0.500;MQ=35.51;MQ0=6;MQRankSum=-7.570;QD=4.87;ReadPosRankSum=0.881;SB=-3.900e+02	GT:AD:DP:GQ:PL	0/1:125,104:231:99:1154,0,2311
chrII	7013	.	C	T	934.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.101;DP=224;Dels=0.01;FS=51.890;HaplotypeScore=45.6076;MLEAC=1;MLEAF=0.500;MQ=34.72;MQ0=8;MQRankSum=-3.097;QD=4.17;ReadPosRankSum=3.450;SB=-2.910e+02	GT:AD:DP:GQ:PL	0/1:152,69:221:99:964,0,2194
chrII	7044	.	C	T	560.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=30.2544;MLEAC=1;MLEAF=0.500;MQ=37.91;MQ0=8;MQRankSum=-5.292;QD=2.98;ReadPosRankSum=0.447;SB=-2.560e+02	GT:AD:DP:GQ:PL	0/1:117,69:188:99:590,0,1968
chrII	7225	.	T	A	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.884;DP=171;Dels=0.00;FS=38.065;HaplotypeScore=32.8723;MLEAC=1;MLEAF=0.500;MQ=43.06;MQ0=3;MQRankSum=-4.820;QD=0.16;ReadPosRankSum=-2.315;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:147,24:171:57:57,0,2592
chrII	7247	.	C	T	561.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.630;DP=189;Dels=0.00;FS=66.933;HaplotypeScore=11.9200;MLEAC=1;MLEAF=0.500;MQ=41.24;MQ0=4;MQRankSum=-7.936;QD=2.97;ReadPosRankSum=1.379;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:124,64:189:99:591,0,2298
chrII	7254	.	T	C	514.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.490;DP=187;Dels=0.00;FS=69.754;HaplotypeScore=8.7653;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=4;MQRankSum=-7.721;QD=2.75;ReadPosRankSum=1.538;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:116,70:187:99:544,0,2130
chrII	7273	.	A	G	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949;DP=211;Dels=0.00;FS=59.563;HaplotypeScore=5.0999;MLEAC=1;MLEAF=0.500;MQ=37.87;MQ0=1;MQRankSum=-0.748;QD=0.13;ReadPosRankSum=3.125;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:187,24:211:57:57,0,2754
chrII	7294	.	C	T	323.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.358;DP=208;Dels=0.00;FS=19.721;HaplotypeScore=12.7622;MLEAC=1;MLEAF=0.500;MQ=36.27;MQ0=1;MQRankSum=-2.090;QD=1.55;ReadPosRankSum=0.105;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:162,42:208:99:353,0,2127
chrII	7308	.	G	T	623.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;DP=189;Dels=0.00;FS=6.220;HaplotypeScore=4.1414;MLEAC=1;MLEAF=0.500;MQ=34.81;MQ0=1;MQRankSum=0.070;QD=3.30;ReadPosRankSum=-0.232;SB=-2.590e+02	GT:AD:DP:GQ:PL	0/1:135,53:189:99:653,0,1418
chrII	7330	.	T	C	247.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.645;DP=160;Dels=0.00;FS=1.043;HaplotypeScore=42.3643;MLEAC=1;MLEAF=0.500;MQ=34.19;MQ0=1;MQRankSum=-0.496;QD=1.54;ReadPosRankSum=1.809;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:126,33:160:99:277,0,1410
chrII	7332	.	A	G	243.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=39.9983;MLEAC=1;MLEAF=0.500;MQ=34.66;MQ0=1;MQRankSum=-0.439;QD=1.51;ReadPosRankSum=1.581;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:128,33:161:99:273,0,1274
chrII	7333	.	T	C	264.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=39.9983;MLEAC=1;MLEAF=0.500;MQ=35.05;MQ0=0;MQRankSum=-0.299;QD=1.66;ReadPosRankSum=1.287;SB=-3.501e+01	GT:AD:DP:GQ:PL	0/1:126,33:159:99:294,0,1127
chrII	7336	.	G	A	284.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;DP=158;Dels=0.00;FS=1.057;HaplotypeScore=8.7535;MLEAC=1;MLEAF=0.500;MQ=35.26;MQ0=1;MQRankSum=1.318;QD=1.80;ReadPosRankSum=-1.076;SB=-4.101e+01	GT:AD:DP:GQ:PL	0/1:118,39:158:99:314,0,1165
chrII	7337	.	C	T	290.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.477;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=34.06;MQ0=1;MQRankSum=0.540;QD=1.91;ReadPosRankSum=0.132;SB=-4.501e+01	GT:AD:DP:GQ:PL	0/1:118,33:152:99:320,0,1229
chrII	7351	.	A	G	179.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.161;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.4522;MLEAC=1;MLEAF=0.500;MQ=34.47;MQ0=1;MQRankSum=-0.977;QD=1.10;ReadPosRankSum=1.221;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:134,28:162:99:209,0,1178
chrII	7362	.	G	A	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DP=136;Dels=0.00;FS=2.326;HaplotypeScore=11.1521;MLEAC=1;MLEAF=0.500;MQ=35.75;MQ0=1;MQRankSum=0.498;QD=0.08;ReadPosRankSum=-1.994;SB=-9.001e+01	GT:AD:DP:GQ:PL	0/1:109,27:136:41:41,0,1176
chrII	7416	.	G	T	78.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;DP=125;Dels=0.03;FS=25.681;HaplotypeScore=22.9066;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=2;MQRankSum=-5.666;QD=0.62;ReadPosRankSum=2.397;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,25:121:99:108,0,1304
chrII	7510	.	G	A,T	2010.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.5696;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.82;MQ0=2;QD=15.11;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/2:0,43,90:133:99:2070,1322,1229,747,0,582
chrII	7511	.	G	A	590.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.531;DP=133;Dels=0.00;FS=148.235;HaplotypeScore=4.4017;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=2;MQRankSum=-0.316;QD=4.44;ReadPosRankSum=6.394;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,44:133:99:620,0,1246
chrII	7549	.	T	C	1377.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;DP=157;Dels=0.00;FS=53.962;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=22;MQRankSum=1.245;QD=8.77;ReadPosRankSum=5.257;SB=-6.710e+02	GT:AD:DP:GQ:PL	0/1:39,116:157:99:1407,0,141
chrII	7776	.	G	A	85.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;DP=75;Dels=0.00;FS=33.176;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=19.74;MQ0=21;MQRankSum=-0.074;QD=1.13;ReadPosRankSum=1.583;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:61,13:75:99:115,0,354
chrII	7791	.	A	C	82.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.566;DP=77;Dels=0.00;FS=22.582;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.56;MQ0=26;MQRankSum=-2.326;QD=1.07;ReadPosRankSum=0.672;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,22:77:99:112,0,391
chrII	7933	.	A	T	49.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;DP=76;Dels=0.00;FS=7.450;HaplotypeScore=26.6316;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=6;MQRankSum=-3.761;QD=0.64;ReadPosRankSum=-2.038;SB=-5.801e+01	GT:AD:DP:GQ:PL	0/1:45,19:76:79:79,0,587
chrII	7945	.	A	G	227.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DP=100;Dels=0.00;FS=24.643;HaplotypeScore=6.3696;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=10;MQRankSum=0.543;QD=2.27;ReadPosRankSum=-3.091;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,37:100:99:257,0,744
chrII	7997	.	G	A	362.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.615;DP=119;Dels=0.00;FS=35.150;HaplotypeScore=7.4641;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=17;MQRankSum=1.700;QD=3.04;ReadPosRankSum=1.793;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,54:119:99:392,0,656
chrII	8001	.	T	G	329.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.385;DP=118;Dels=0.00;FS=35.804;HaplotypeScore=11.6812;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=17;MQRankSum=0.141;QD=2.79;ReadPosRankSum=1.942;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,54:118:99:359,0,721
chrII	8006	.	A	G	308.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.977;DP=117;Dels=0.00;FS=29.819;HaplotypeScore=14.0562;MLEAC=1;MLEAF=0.500;MQ=23.59;MQ0=20;MQRankSum=2.793;QD=2.63;ReadPosRankSum=3.056;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:75,41:117:99:338,0,654
chrII	8009	.	A	G	348.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;DP=110;Dels=0.00;FS=26.967;HaplotypeScore=14.1109;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=19;MQRankSum=2.234;QD=3.16;ReadPosRankSum=3.052;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:71,39:110:99:378,0,524
chrII	8023	.	G	T	273.21	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.444;DP=86;Dels=0.00;FS=4.065;HaplotypeScore=25.8739;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=26;MQRankSum=4.601;QD=3.18;ReadPosRankSum=-5.990;SB=-2.194e-01	GT:AD:DP:GQ:PL	1/1:46,31:86:16:306,16,0
chrII	8041	.	G	A	105.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.417;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.0146;MLEAC=2;MLEAF=1.00;MQ=11.73;MQ0=34;MQRankSum=3.518;QD=1.81;ReadPosRankSum=-0.596;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:48,10:58:15:138,15,0
chrII	8047	.	T	C	99.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.1134;MLEAC=2;MLEAF=1.00;MQ=11.34;MQ0=37;MQRankSum=0.156;QD=1.55;ReadPosRankSum=0.343;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:27,37:64:15:132,15,0
chrII	8288	.	T	A	54.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=19.50;MQ0=3;MQRankSum=0.742;QD=5.50;ReadPosRankSum=0.742;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:1,9:10:9:87,9,0
chrII	8338	.	T	G	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=1;QD=1.78;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,10:10:6:49,6,0
chrII	8353	.	A	G	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=1;MQRankSum=-0.751;QD=2.38;ReadPosRankSum=0.751;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:1,9:10:6:55,6,0
chrII	9432	.	C	T	90.26	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=1.64;SB=-9.927e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:15:123,15,0
chrII	9544	.	G	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=23.27;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1243,132,0
chrII	9560	.	C	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.49;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1172,126,0
chrII	9679	.	A	G	715	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=17.87;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:748,81,0
chrII	9688	.	C	G	892	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=19.39;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:925,102,0
chrII	9859	.	T	G	2378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.2548;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.633;QD=22.43;ReadPosRankSum=1.666;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:1,103:106:99:2411,267,0
chrII	9932	.	T	C	2366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.0010;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.677;QD=22.97;ReadPosRankSum=1.315;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:2,100:103:99:2399,264,0
chrII	10136	.	G	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.86;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1577,174,0
chrII	10210	.	G	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=17.02;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1582,171,0
chrII	10401	.	G	A	2240	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=22.63;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2273,243,0
chrII	10572	.	T	C	1437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.00;FS=13.617;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-1.322;QD=20.24;ReadPosRankSum=2.380;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1470,162,0
chrII	10621	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.46;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1901,201,0
chrII	10627	.	G	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.5205;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=19.01;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1953,210,0
chrII	10674	.	A	C	1895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.170;QD=18.40;ReadPosRankSum=1.698;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:1,101:103:99:1928,210,0
chrII	10708	.	C	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=71.4796;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=19.16;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1700,180,0
chrII	10783	.	G	A	1674	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.67;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1707,180,0
chrII	10795	.	T	A	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=0.242;QD=18.29;ReadPosRankSum=1.652;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1606,177,0
chrII	10801	.	G	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.97;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1631,174,0
chrII	10943	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.43;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1729,195,0
chrII	11039	.	A	G	1668	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.95;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1701,189,0
chrII	11072	.	T	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.67;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1607,177,0
chrII	11360	.	T	A	1492	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.65;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1525,162,0
chrII	11361	.	G	C	1439	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.77;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1472,159,0
chrII	11435	.	G	A	1709	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.63;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1742,183,0
chrII	11470	.	T	C	1758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.580;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.654;QD=19.53;ReadPosRankSum=1.693;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1791,195,0
chrII	11545	.	T	C	1587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.222;QD=20.35;ReadPosRankSum=1.688;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1620,177,0
chrII	11738	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.44;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1471,165,0
chrII	11749	.	T	C	1543	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.15;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1576,171,0
chrII	12080	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.19;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1386,156,0
chrII	12122	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.72;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1493,165,0
chrII	12208	.	G	A	1277	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.64;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1310,138,0
chrII	12511	.	A	G	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=61;Dels=0.00;FS=3.053;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.033;QD=20.56;ReadPosRankSum=2.369;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1287,141,0
chrII	12728	.	A	G	1364	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=21.65;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1397,153,0
chrII	14472	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.06;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1128,120,0
chrII	15222	.	T	A	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=0.594;QD=19.59;ReadPosRankSum=1.683;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1404,150,0
chrII	15234	.	T	C	1198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=1.632;QD=17.36;ReadPosRankSum=1.682;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1231,135,0
chrII	15510	.	G	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.99;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1452,153,0
chrII	15518	.	A	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.29;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1433,156,0
chrII	15830	.	A	G	1809	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.61;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1842,201,0
chrII	16749	.	G	A	1671	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.63;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1704,180,0
chrII	16896	.	T	C	1311	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.21;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1344,147,0
chrII	17204	.	A	G	1858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=84;Dels=0.00;FS=9.338;HaplotypeScore=8.2821;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.543;QD=22.12;ReadPosRankSum=1.980;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1891,210,0
chrII	17571	.	C	T	1646	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.84;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1679,177,0
chrII	17715	.	A	G	1611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.372;QD=20.92;ReadPosRankSum=1.642;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1644,180,0
chrII	18082	.	A	T	3518.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=182;Dels=0.00;FS=3.108;HaplotypeScore=16.0463;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.462;QD=19.33;ReadPosRankSum=1.694;SB=-2.140e+03	GT:AD:DP:GQ:PL	1/1:1,181:182:99:3518,390,0
chrII	18175	.	T	C	3762.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.37;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3762,411,0
chrII	18513	.	A	G	1890	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.879;QD=18.00;ReadPosRankSum=2.403;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:2,103:105:99:1923,213,0
chrII	19466	.	G	A	2117	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.0719;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.97;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2150,228,0
chrII	19479	.	T	C	1893	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=17.53;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1926,210,0
chrII	19967	.	T	C	3212.98	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.28;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3246,357,0
chrII	20442	.	G	C	1883	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.83;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,97:100:99:1916,213,0
chrII	20445	.	A	G	1837	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.56;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1870,201,0
chrII	20724	.	A	T	2112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.247;QD=21.12;ReadPosRankSum=1.663;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2145,228,0
chrII	21461	.	T	C	3440.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.609;QD=23.72;ReadPosRankSum=1.708;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:1,144:145:99:3440,372,0
chrII	21480	.	G	A	3367.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.88;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,138:141:99:3367,354,0
chrII	21538	.	T	C	3889.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.1552;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.15;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,168:168:99:3889,432,0
chrII	21610	.	A	T	2802	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.6204;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.30;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2835,300,0
chrII	21612	.	C	T	2784	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.7476;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.32;SB=-1.402e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2817,300,0
chrII	21769	.	T	G	4871.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=219;Dels=0.00;FS=5.023;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.057;QD=22.24;ReadPosRankSum=1.700;SB=-1.703e+03	GT:AD:DP:GQ:PL	1/1:1,212:219:99:4871,546,0
chrII	21918	.	T	A	2487	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=21.63;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2520,279,0
chrII	21977	.	C	A	2575	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=21.46;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2608,285,0
chrII	21979	.	C	A	2674	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.47;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2707,288,0
chrII	22234	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9008;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.10;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1380,150,0
chrII	22273	.	C	G	1238	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.30;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1271,144,0
chrII	22280	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.70;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1113,123,0
chrII	22296	.	C	G	1215	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.41;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1248,138,0
chrII	22415	.	T	C	1500	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.27;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1533,168,0
chrII	22423	.	C	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.12;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1482,156,0
chrII	22710	.	C	A	2196	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6830;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.53;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2229,237,0
chrII	23219	.	C	T	1739	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.11;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1772,195,0
chrII	23230	.	A	G	2012	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.40;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2045,222,0
chrII	23766	.	G	A	752	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=15.35;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:785,87,0
chrII	23961	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.11;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1390,150,0
chrII	24209	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1316,144,0
chrII	24838	.	A	G	4121.01	PASS	AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.9271;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.28;SB=-2.030e+03	GT:AD:DP:GQ:PL	1/1:0,176:177:99:4121,456,0
chrII	24859	.	G	A	3851.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.85;SB=-1.990e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3851,411,0
chrII	24890	.	C	T	3382.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.9442;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=22.40;SB=-2.059e+03	GT:AD:DP:GQ:PL	1/1:0,149:151:99:3382,357,0
chrII	25059	.	C	T	2114	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.54;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2147,237,0
chrII	25345	.	A	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.97;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1391,156,0
chrII	25639	.	A	T	1310	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.681;QD=18.99;ReadPosRankSum=1.681;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1343,141,0
chrII	25680	.	C	G	1482	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.52;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1515,168,0
chrII	25978	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.79;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1555,174,0
chrII	26029	.	G	A	740	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=13.70;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:773,87,0
chrII	26040	.	C	T	784	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=13.29;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:90:817,90,0
chrII	26161	.	G	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.13;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1560,171,0
chrII	26500	.	A	C	1477	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1510,165,0
chrII	26767	.	T	A	1720	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.05;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1753,186,0
chrII	26815	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.88;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1504,165,0
chrII	26850	.	C	T	1429	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.4111;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.80;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1462,156,0
chrII	26950	.	T	A	1601	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.1976;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.07;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1634,171,0
chrII	27157	.	G	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.79;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1583,168,0
chrII	27850	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.619;QD=20.44;ReadPosRankSum=1.567;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1770,198,0
chrII	28538	.	A	G	859	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:892,96,0
chrII	28614	.	T	C	898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.028;QD=19.96;ReadPosRankSum=1.404;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:81:931,81,0
chrII	28912	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.79;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1000,111,0
chrII	28960	.	C	G	1106	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=23.53;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1139,123,0
chrII	29064	.	T	C	2873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.482;DP=125;Dels=0.00;FS=3.264;HaplotypeScore=11.2025;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.800;QD=22.98;ReadPosRankSum=2.095;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:2,123:125:99:2906,321,0
chrII	29114	.	C	A	2335	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.35;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2368,252,0
chrII	29190	.	A	G	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.301;HaplotypeScore=4.7819;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.742;QD=17.20;ReadPosRankSum=1.633;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1254,138,0
chrII	29192	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=4.7819;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-0.854;QD=17.13;ReadPosRankSum=1.683;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1249,141,0
chrII	29269	.	A	G	1695	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=19.04;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1728,189,0
chrII	29289	.	C	T	2041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=96;Dels=0.00;FS=4.508;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-1.227;QD=21.26;ReadPosRankSum=0.253;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2074,219,0
chrII	29361	.	T	C	2574	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=21.27;SB=-1.506e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2607,285,0
chrII	29377	.	A	C	2425	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=21.46;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2458,264,0
chrII	29424	.	G	C	1529	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=17.18;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1562,174,0
chrII	29426	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.498;QD=16.28;ReadPosRankSum=1.573;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1466,162,0
chrII	35631	.	C	T	617	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=22.04;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:69:650,69,0
chrII	35840	.	G	A	242	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=36.58;MQ0=0;QD=14.24;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:30:275,30,0
chrII	36362	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=17.60;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1001,111,0
chrII	36385	.	C	T	815	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=15.38;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:90:848,90,0
chrII	36389	.	T	C	819	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;MQRankSum=-0.577;QD=13.65;ReadPosRankSum=1.617;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:93:852,93,0
chrII	36517	.	T	C	434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DP=71;Dels=0.00;FS=3.512;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;MQRankSum=-0.330;QD=6.11;ReadPosRankSum=0.191;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:40:467,40,0
chrII	36518	.	C	A	460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=72;Dels=0.00;FS=3.312;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=-0.261;QD=6.39;ReadPosRankSum=0.295;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:43:493,43,0
chrII	37454	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.59;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1620,171,0
chrII	37628	.	C	T	2052	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2085,222,0
chrII	39234	.	A	T	972	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=27.00;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1005,105,0
chrII	39405	.	C	T	1741	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.85;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1774,189,0
chrII	39435	.	T	C	1774	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.12;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1807,201,0
chrII	39607	.	A	G	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=3.906;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.556;QD=23.64;ReadPosRankSum=1.674;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1428,156,0
chrII	40179	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.74;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1568,174,0
chrII	40260	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.82;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2106,222,0
chrII	40329	.	C	T	2136	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.02;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2169,228,0
chrII	40479	.	T	C	379	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=15.16;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,23:25:45:412,45,0
chrII	40554	.	A	G	1173	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.88;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1206,135,0
chrII	40590	.	C	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=0.35;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,32:33:6:43,6,0
chrII	40699	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.57;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1447,165,0
chrII	40720	.	C	T	1057	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.49;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1090,117,0
chrII	40882	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.389;QD=21.94;ReadPosRankSum=1.662;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:1130,126,0
chrII	40983	.	C	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.81;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1972,207,0
chrII	40992	.	C	T	2043	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.70;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2076,225,0
chrII	41046	.	T	C	1761	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.96;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1794,195,0
chrII	41484	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.69;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1881,198,0
chrII	41506	.	C	A	2024	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.39;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2057,216,0
chrII	41913	.	A	G	1791	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.07;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1824,201,0
chrII	42187	.	C	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.76;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1496,159,0
chrII	42836	.	A	G	1092	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.60;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1125,126,0
chrII	42921	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5539;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.83;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1430,153,0
chrII	43179	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=4.523;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.597;QD=20.67;ReadPosRankSum=-1.189;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:94:1087,94,0
chrII	43330	.	G	A	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.299;QD=20.21;ReadPosRankSum=0.433;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1165,107,0
chrII	43348	.	A	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.78;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1279,144,0
chrII	43654	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.71;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1379,153,0
chrII	43688	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.63;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1374,150,0
chrII	43708	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.329;DP=72;Dels=0.00;FS=16.118;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.284;QD=18.10;ReadPosRankSum=3.329;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:4,67:72:99:1336,147,0
chrII	44047	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.31;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1269,141,0
chrII	44098	.	G	T	2749	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.70;SB=-1.413e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2782,294,0
chrII	44904	.	C	T	819	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=15.45;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:852,99,0
chrII	44974	.	T	C	1225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=7.811;HaplotypeScore=9.6141;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.200;QD=16.78;ReadPosRankSum=2.315;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1258,138,0
chrII	45009	.	G	A	1637	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.21;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1670,174,0
chrII	45075	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=77;Dels=0.04;FS=3.129;HaplotypeScore=18.8581;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.685;QD=17.74;ReadPosRankSum=0.515;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1399,150,0
chrII	45269	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.8821;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-1.650;QD=17.42;ReadPosRankSum=1.650;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1514,168,0
chrII	45299	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.01;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1494,162,0
chrII	45392	.	C	G	931	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=16.33;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:964,105,0
chrII	45594	.	C	T	3684.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=24.72;SB=-1.704e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3684,393,0
chrII	45824	.	T	A	861	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:894,99,0
chrII	45866	.	C	T	1288	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1321,138,0
chrII	46603	.	T	C	2271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.618;QD=24.96;ReadPosRankSum=1.656;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2304,255,0
chrII	46720	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=14.6803;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.87;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1623,177,0
chrII	46930	.	C	A	2646	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.83;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,122:127:99:2679,282,0
chrII	47062	.	A	G	2305	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.78;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2338,252,0
chrII	47244	.	A	T	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=14.0712;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.071;QD=19.24;ReadPosRankSum=1.697;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1938,210,0
chrII	47279	.	G	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.33;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1866,198,0
chrII	47612	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.46;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1514,165,0
chrII	47971	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.10;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1332,141,0
chrII	48461	.	C	T	904	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=14.35;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:937,99,0
chrII	48655	.	T	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.40;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1467,165,0
chrII	48762	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.010;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=0.829;QD=21.39;ReadPosRankSum=1.657;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1017,111,0
chrII	48817	.	T	C	787	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.89;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:820,90,0
chrII	48887	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.59;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1433,153,0
chrII	49026	.	G	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=19.18;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1088,114,0
chrII	49031	.	T	C	936	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.02;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:969,108,0
chrII	49175	.	T	C	1683	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.86;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1716,186,0
chrII	49379	.	T	A	1289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.713;DP=78;Dels=0.00;FS=12.632;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-2.672;QD=16.53;ReadPosRankSum=3.713;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:5,73:78:99:1322,141,0
chrII	49383	.	G	A	1270	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1013;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.94;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1303,141,0
chrII	49603	.	A	G	1612	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=12.3416;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.67;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1645,183,0
chrII	49730	.	T	C	2181	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.59;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2214,243,0
chrII	49999	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.98;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2068,228,0
chrII	50071	.	T	C	2099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.731;DP=117;Dels=0.00;FS=5.413;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=-1.809;QD=17.94;ReadPosRankSum=2.940;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:3,113:117:99:2132,231,0
chrII	50072	.	G	A	2185	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.84;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2218,234,0
chrII	50569	.	A	G	2076	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.163;DP=102;Dels=0.00;FS=16.674;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.353;QD=20.35;ReadPosRankSum=3.284;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:4,98:102:99:2109,231,0
chrII	50583	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=20.66;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2078,219,0
chrII	50601	.	C	A	1302	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.87;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1335,141,0
chrII	50954	.	G	C	2256	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.2923;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.89;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2289,249,0
chrII	51538	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=60;Dels=0.00;FS=2.728;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.272;QD=22.05;ReadPosRankSum=2.367;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:2,57:60:99:1356,150,0
chrII	51976	.	G	A	2269	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.3630;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.03;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2302,249,0
chrII	52083	.	T	C	630	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=15.00;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:663,75,0
chrII	52107	.	C	A	591	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.89;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:66:624,66,0
chrII	52150	.	C	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.31;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1130,126,0
chrII	52217	.	C	T	2127	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.45;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2160,225,0
chrII	52319	.	C	T	2289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;DP=100;Dels=0.00;FS=3.054;HaplotypeScore=8.4181;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.662;QD=22.89;ReadPosRankSum=-1.277;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2322,246,0
chrII	53017	.	T	C	2505	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.83;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2538,276,0
chrII	53037	.	G	A	2972	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.93;SB=-1.629e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3005,318,0
chrII	53148	.	T	C	2547	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.49;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2580,279,0
chrII	53512	.	A	C	1279	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.01;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1312,144,0
chrII	53554	.	G	C	1040	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.25;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:64:99:1073,120,0
chrII	53802	.	A	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.07;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1387,153,0
chrII	53815	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.62;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1765,189,0
chrII	54034	.	G	A	2258	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.58;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2291,243,0
chrII	54042	.	G	A	2184	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.00;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2217,237,0
chrII	54156	.	T	C	4381.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;DP=200;Dels=0.00;FS=3.473;HaplotypeScore=9.8928;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.260;QD=21.91;ReadPosRankSum=-1.155;SB=-2.306e+03	GT:AD:DP:GQ:PL	1/1:1,197:200:99:4381,456,0
chrII	54267	.	A	G	2879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=132;Dels=0.00;FS=3.027;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.475;QD=21.81;ReadPosRankSum=2.412;SB=-1.655e+03	GT:AD:DP:GQ:PL	1/1:2,130:132:99:2912,312,0
chrII	54607	.	G	A	1848	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.00;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1881,207,0
chrII	54682	.	T	C	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=4.543;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.639;QD=21.11;ReadPosRankSum=1.685;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1616,177,0
chrII	54813	.	G	A	1483	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.51;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1516,162,0
chrII	54988	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.59;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1185,129,0
chrII	55167	.	T	C	1807	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.47;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1840,201,0
chrII	55191	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.54;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1563,171,0
chrII	55192	.	A	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=23.96;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1638,177,0
chrII	55537	.	G	C	1993	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.91;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2026,219,0
chrII	55693	.	A	C	2456	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.33;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2489,276,0
chrII	56482	.	G	A	1120	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.40;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1153,123,0
chrII	56575	.	A	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.90;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1201,129,0
chrII	56602	.	G	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.19;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1320,144,0
chrII	56865	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.64;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1487,156,0
chrII	56942	.	A	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=23.00;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1367,147,0
chrII	56961	.	C	T	1267	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.12;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1300,141,0
chrII	57316	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.54;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1634,183,0
chrII	57390	.	C	T	2049	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2082,219,0
chrII	57674	.	G	C	1992	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.90;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2025,219,0
chrII	57742	.	C	T	1896	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.30;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1929,204,0
chrII	58180	.	C	T	2322	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.33;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2355,249,0
chrII	58496	.	A	G	2543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=120;Dels=0.00;FS=2.936;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.796;QD=21.19;ReadPosRankSum=2.408;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:2,118:120:99:2576,282,0
chrII	58787	.	A	T	2282	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.33;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2315,255,0
chrII	58900	.	A	G	1741	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.01;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1774,195,0
chrII	59001	.	C	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1850,198,0
chrII	59164	.	G	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.83;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1343,147,0
chrII	59191	.	G	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.82;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1222,135,0
chrII	59525	.	T	C	1094	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1127,123,0
chrII	59984	.	A	G	2061	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.16;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2094,222,0
chrII	60298	.	C	T	2892	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.32;SB=-1.530e+03	GT:AD:DP:GQ:PL	1/1:0,120:124:99:2925,312,0
chrII	60446	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.37;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1621,171,0
chrII	60470	.	A	G	1539	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.24;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1572,168,0
chrII	60478	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.70;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1573,171,0
chrII	60545	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=15.62;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1423,150,0
chrII	60551	.	G	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.42;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1488,162,0
chrII	60786	.	T	C	1789	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=22.65;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1822,201,0
chrII	60829	.	C	A	1597	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.88;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1630,174,0
chrII	60917	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=15.16;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1155,129,0
chrII	61024	.	C	A	757	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=16.46;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:84:790,84,0
chrII	61031	.	T	C	774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=6.532;HaplotypeScore=33.5491;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-0.423;QD=17.20;ReadPosRankSum=1.655;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:90:807,90,0
chrII	61067	.	G	A	662	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;QD=11.82;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:72:695,72,0
chrII	61071	.	G	A	675	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=11.25;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:75:708,75,0
chrII	61089	.	T	A	840	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=10.91;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:96:873,96,0
chrII	61103	.	T	C	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;MQRankSum=-0.495;QD=12.38;ReadPosRankSum=1.691;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1073,117,0
chrII	61199	.	A	T	1991	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.901;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.374;QD=19.52;ReadPosRankSum=1.698;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2024,216,0
chrII	61202	.	C	T	1893	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=18.38;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1926,204,0
chrII	61208	.	C	T	1790	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=19.46;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1823,195,0
chrII	61287	.	G	A	1630	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.03;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1663,177,0
chrII	61304	.	G	A	1733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=5.441;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.196;QD=20.15;ReadPosRankSum=-0.247;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,83:86:99:1766,189,0
chrII	61376	.	T	C	1504	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=23.50;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1537,168,0
chrII	61447	.	T	C	1967	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=20.71;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2000,216,0
chrII	61810	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.26;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1227,132,0
chrII	61835	.	A	T	1187	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.55;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1220,129,0
chrII	62000	.	T	C	1420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=3.399;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.099;QD=20.00;ReadPosRankSum=1.633;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1453,156,0
chrII	62381	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.43;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1126,123,0
chrII	62709	.	G	T	730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=8.4573;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.330;QD=16.59;ReadPosRankSum=0.908;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,41:43:81:763,81,0
chrII	62879	.	G	C	724	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.11;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:757,84,0
chrII	62891	.	C	T	868	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=20.19;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:901,99,0
chrII	62971	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.16;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1387,150,0
chrII	63113	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.153;QD=20.25;ReadPosRankSum=1.644;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1653,177,0
chrII	63115	.	A	T	1660	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.01;FS=5.384;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.501;QD=21.56;ReadPosRankSum=1.687;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1693,177,0
chrII	63144	.	T	C	946	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7853;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-1.667;QD=17.85;ReadPosRankSum=1.602;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:979,108,0
chrII	63295	.	G	T	1748	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=20.56;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1781,198,0
chrII	63304	.	T	A	1690	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.612;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=0.509;QD=19.88;ReadPosRankSum=1.691;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1723,189,0
chrII	63305	.	G	C	1629	SnpCluster	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=18.94;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1662,186,0
chrII	63428	.	C	G	2220	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.56;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,103:108:99:2253,249,0
chrII	63732	.	A	G	1283	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.15;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1316,144,0
chrII	63857	.	T	C	1807	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.26;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1840,204,0
chrII	63955	.	G	A	808	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.84;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:841,90,0
chrII	64139	.	C	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5572;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.74;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1861,201,0
chrII	64291	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.67;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1513,162,0
chrII	64716	.	C	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.80;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1556,171,0
chrII	64864	.	A	C	758	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.95;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:791,87,0
chrII	65171	.	T	C	1056	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.3960;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.673;QD=18.21;ReadPosRankSum=0.597;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1089,120,0
chrII	65480	.	G	A	915	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.67;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:948,102,0
chrII	65606	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.24;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1553,165,0
chrII	65975	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.68;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1708,189,0
chrII	66052	.	T	C	1776	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.06;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1809,195,0
chrII	66122	.	C	T	1761	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.74;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1794,198,0
chrII	66467	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=16.72;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:86:99:1471,156,0
chrII	66479	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=3.059;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.175;QD=16.97;ReadPosRankSum=1.693;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1560,174,0
chrII	66566	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.25;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1279,141,0
chrII	66975	.	G	T	519	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=23.59;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:57:552,57,0
chrII	68245	.	G	A	568	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.85;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:66:601,66,0
chrII	68282	.	G	A	68.51	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=4.57;SB=-2.545e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:12:101,12,0
chrII	68662	.	A	C	1285	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,55:58:99:1318,144,0
chrII	68834	.	C	T	1975	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.19;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2008,216,0
chrII	69128	.	C	G	2126	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.15;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2159,237,0
chrII	69229	.	A	G	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.230;QD=21.32;ReadPosRankSum=1.690;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1824,198,0
chrII	69278	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.86;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1483,162,0
chrII	69616	.	C	T	854	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=7.8529;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=13.56;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:887,99,0
chrII	69772	.	A	G	3654.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.88;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,152:153:99:3654,402,0
chrII	70420	.	G	C	1781	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.36;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1814,198,0
chrII	70633	.	G	A	2132	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.38;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2165,228,0
chrII	70638	.	A	G	2098	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.57;SB=-1.368e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2131,234,0
chrII	71108	.	G	A	292.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;DP=107;Dels=0.00;FS=1.645;HaplotypeScore=8.9381;MLEAC=1;MLEAF=0.500;MQ=42.95;MQ0=0;MQRankSum=-2.418;QD=2.73;ReadPosRankSum=-5.194;SB=-3.040e+02	GT:AD:DP:GQ:PL	0/1:68,39:107:99:322,0,311
chrII	71115	.	G	T	199.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=-3.422;QD=1.88;ReadPosRankSum=-5.559;SB=-1.680e+02	GT:AD:DP:GQ:PL	0/1:73,32:106:99:229,0,546
chrII	71124	.	C	G	67.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=1;MLEAF=0.500;MQ=44.19;MQ0=0;MQRankSum=-4.186;QD=0.59;ReadPosRankSum=-6.638;SB=-1.280e+02	GT:AD:DP:GQ:PL	0/1:87,25:114:97:97,0,717
chrII	71185	.	T	C	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=3.044;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-1.102;QD=18.27;ReadPosRankSum=2.398;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1769,192,0
chrII	71195	.	T	G	1761	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=18.34;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1794,195,0
chrII	71276	.	C	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.29;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1555,168,0
chrII	71383	.	G	C	1015	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.07;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1048,117,0
chrII	71420	.	T	C	601	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=13.1329;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.21;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:69:634,69,0
chrII	71494	.	A	G	1180	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.86;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1213,129,0
chrII	71634	.	A	T	423	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=13.22;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:51:456,51,0
chrII	71636	.	T	A	481	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=15.03;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:57:514,57,0
chrII	72018	.	C	G	1035	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=19.90;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1068,120,0
chrII	72096	.	A	T	2029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DP=97;Dels=0.00;FS=3.291;HaplotypeScore=3.5640;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.552;QD=20.92;ReadPosRankSum=1.516;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2062,219,0
chrII	72117	.	A	G	1898	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.57;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1931,210,0
chrII	72365	.	G	A	311.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.671;DP=100;Dels=0.04;FS=14.081;HaplotypeScore=145.5572;MLEAC=1;MLEAF=0.500;MQ=46.42;MQ0=0;MQRankSum=1.672;QD=3.11;ReadPosRankSum=0.517;SB=-1.220e+02	GT:AD:DP:GQ:PL	0/1:73,23:96:99:341,0,277
chrII	72368	.	A	C	284.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.460;DP=102;Dels=0.00;FS=10.957;HaplotypeScore=144.3004;MLEAC=1;MLEAF=0.500;MQ=46.43;MQ0=0;MQRankSum=1.720;QD=2.78;ReadPosRankSum=-0.264;SB=-7.501e+01	GT:AD:DP:GQ:PL	0/1:81,21:102:99:314,0,307
chrII	72371	.	A	G	280.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.652;DP=103;Dels=0.00;FS=16.290;HaplotypeScore=212.3487;MLEAC=1;MLEAF=0.500;MQ=46.29;MQ0=0;MQRankSum=2.179;QD=2.72;ReadPosRankSum=-2.105;SB=-7.501e+01	GT:AD:DP:GQ:PL	0/1:78,23:103:99:310,0,272
chrII	72380	.	A	G	126.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.976;DP=105;Dels=0.00;FS=8.744;HaplotypeScore=93.3847;MLEAC=1;MLEAF=0.500;MQ=47.15;MQ0=0;MQRankSum=0.871;QD=1.20;ReadPosRankSum=-1.881;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,14:105:99:156,0,374
chrII	72594	.	C	G	1724	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=16.90;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1757,198,0
chrII	73354	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.82;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1102,117,0
chrII	73587	.	T	C	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.588;QD=22.78;ReadPosRankSum=1.636;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1673,183,0
chrII	74263	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3999;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.11;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1669,177,0
chrII	74291	.	C	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.85;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1409,153,0
chrII	74441	.	A	G	2683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=5.384;HaplotypeScore=8.2712;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.003;QD=22.74;ReadPosRankSum=1.702;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:1,113:118:99:2716,309,0
chrII	74528	.	T	C	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=99;Dels=0.00;FS=9.722;HaplotypeScore=10.4108;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.412;QD=20.64;ReadPosRankSum=2.928;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:3,95:99:99:2076,228,0
chrII	74585	.	C	A	2579	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8381;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.23;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2612,276,0
chrII	74713	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=15.54;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1540,162,0
chrII	74767	.	G	A	2912	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.57;SB=-1.421e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2945,312,0
chrII	75330	.	C	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.9640;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.53;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1368,147,0
chrII	76203	.	A	G	1655	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.22;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1688,186,0
chrII	76212	.	C	T	1720	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.23;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1753,189,0
chrII	76213	.	C	T	1728	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=21.33;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1761,189,0
chrII	76314	.	T	G	1903	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.280;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.690;QD=22.65;ReadPosRankSum=1.649;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1936,219,0
chrII	76362	.	C	T	2539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.0245;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.669;QD=23.29;ReadPosRankSum=1.605;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2572,273,0
chrII	76470	.	C	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.08;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1551,171,0
chrII	76662	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.03;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1395,150,0
chrII	76869	.	G	A	1492	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.06;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1525,162,0
chrII	77070	.	A	G	1055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=4.288;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.034;QD=20.69;ReadPosRankSum=1.597;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1088,120,0
chrII	77079	.	A	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.63;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1044,117,0
chrII	77223	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1322,147,0
chrII	77259	.	G	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1594,171,0
chrII	83152	.	A	G	2537	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.06;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2570,288,0
chrII	83443	.	T	C	3127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=11.5105;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.199;QD=21.87;ReadPosRankSum=2.311;SB=-1.730e+03	GT:AD:DP:GQ:PL	1/1:2,140:143:99:3160,345,0
chrII	83521	.	G	A	3344.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.44;SB=-1.410e+03	GT:AD:DP:GQ:PL	1/1:0,148:149:99:3344,354,0
chrII	83659	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.81;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1103,120,0
chrII	83662	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.09;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1140,126,0
chrII	83698	.	C	T	1629	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.62;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1662,183,0
chrII	83713	.	G	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=18.93;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1604,174,0
chrII	83908	.	C	T	2444	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.07;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2477,264,0
chrII	83944	.	G	A	2416	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.23;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2449,261,0
chrII	115774	.	G	A	1788	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.63;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1821,192,0
chrII	116038	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.62;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1285,135,0
chrII	116084	.	C	T	1264	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.87;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1297,141,0
chrII	116102	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=19.09;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1293,135,0
chrII	116106	.	T	C	1194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-1.274;QD=17.56;ReadPosRankSum=1.681;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1227,135,0
chrII	116143	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.34;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1387,150,0
chrII	116518	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.31;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1130,120,0
chrII	116701	.	C	T	1659	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=19.52;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1692,186,0
chrII	116704	.	T	C	1673	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=19.68;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1706,186,0
chrII	116707	.	A	T	1789	SnpCluster	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.64;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1822,204,0
chrII	116832	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.058;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.536;QD=21.27;ReadPosRankSum=1.650;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1820,198,0
chrII	116848	.	G	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=63.6117;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=19.31;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1404,147,0
chrII	116850	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=62.8230;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=19.34;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1387,147,0
chrII	116939	.	G	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=15.04;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1041,114,0
chrII	116947	.	T	G	1055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-0.968;QD=15.29;ReadPosRankSum=1.681;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1088,120,0
chrII	117298	.	A	G	37.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=56;Dels=0.00;FS=8.711;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;MQRankSum=0.546;QD=0.68;ReadPosRankSum=3.247;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:5,51:56:9:70,9,0
chrII	117595	.	T	C	1201	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.71;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1234,135,0
chrII	117972	.	G	A	1780	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.23;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1813,195,0
chrII	118289	.	C	T	997	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1030,114,0
chrII	118370	.	A	G	2430	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.09;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2463,270,0
chrII	118457	.	C	T	2156	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.93;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2189,243,0
chrII	118818	.	C	A	2512	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.63;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2545,270,0
chrII	118921	.	C	T	2319	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.3224;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.30;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2352,252,0
chrII	118953	.	C	T	1606	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.35;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1639,177,0
chrII	118959	.	C	T	1375	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.93;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1408,153,0
chrII	119103	.	T	G	1884	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.70;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1917,207,0
chrII	119247	.	A	C	3152	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=16.4387;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.01;SB=-1.649e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3185,342,0
chrII	119499	.	A	G	2719	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.08;SB=-1.384e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2752,309,0
chrII	119604	.	A	G	2750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.135;QD=18.84;ReadPosRankSum=1.684;SB=-1.501e+03	GT:AD:DP:GQ:PL	1/1:1,145:146:99:2783,309,0
chrII	119739	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=1.607;QD=18.84;ReadPosRankSum=1.649;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1597,174,0
chrII	119999	.	T	G	200.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;DP=64;Dels=0.00;FS=1.141;HaplotypeScore=45.8020;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=0.394;QD=3.13;ReadPosRankSum=-2.696;SB=-7.401e+01	GT:AD:DP:GQ:PL	0/1:48,15:64:30:230,0,30
chrII	120170	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.34;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1390,150,0
chrII	120369	.	G	C	1564	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.55;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1597,174,0
chrII	120427	.	C	T	1969	SnpCluster	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.30;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2002,213,0
chrII	120430	.	G	A	1949	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=100;Dels=0.00;FS=4.472;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;MQRankSum=1.060;QD=19.49;ReadPosRankSum=0.707;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,97:100:99:1982,210,0
chrII	120437	.	C	A	1938	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.82;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1971,219,0
chrII	120585	.	A	G	1949	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1982,222,0
chrII	120630	.	G	A	2015	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.90;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2048,216,0
chrII	120701	.	A	G	2449	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.47;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2482,270,0
chrII	120888	.	G	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.77;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1417,156,0
chrII	121101	.	C	T	2005	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2038,213,0
chrII	121194	.	G	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.57;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1845,195,0
chrII	121421	.	G	A	2001	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.99;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2034,216,0
chrII	121809	.	C	T	1466	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.36;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1499,159,0
chrII	121848	.	C	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.92;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1660,177,0
chrII	121908	.	G	A	2017	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.01;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,93:96:99:2050,219,0
chrII	122467	.	T	A	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=57.29;MQ0=0;MQRankSum=-2.801;QD=0.47;ReadPosRankSum=-2.551;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:23,3:26:42:42,0,272
chrII	123008	.	G	A	1655	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.31;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1688,186,0
chrII	123103	.	T	A	2228	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=19.3004;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=17.01;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2261,243,0
chrII	123311	.	C	T	2026	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=25.01;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2059,219,0
chrII	123320	.	T	C	1852	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=24.05;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1885,210,0
chrII	123339	.	C	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.03;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1668,180,0
chrII	123764	.	G	A	3522.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.12;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3522,378,0
chrII	123800	.	C	T	3371.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.08;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3371,357,0
chrII	123889	.	A	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.90;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1613,177,0
chrII	123940	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.88;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1098,117,0
chrII	124174	.	C	G	2430	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.69;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,124:130:99:2463,273,0
chrII	124286	.	C	A	867	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=17.00;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:900,96,0
chrII	124505	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.226;QD=22.22;ReadPosRankSum=1.682;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1566,174,0
chrII	124574	.	T	C	954	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.67;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:987,111,0
chrII	124616	.	C	T	792	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=14.67;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:825,87,0
chrII	124617	.	A	G	750	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=13.89;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:783,87,0
chrII	124932	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.35;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1374,153,0
chrII	124959	.	A	C	1195	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-1.505;QD=19.59;ReadPosRankSum=0.880;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1228,132,0
chrII	124966	.	A	T	1236	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.704;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.653;QD=20.26;ReadPosRankSum=1.675;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1269,135,0
chrII	125022	.	A	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.08;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1426,153,0
chrII	125552	.	T	C	1150	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.49;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1183,129,0
chrII	126130	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.53;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1552,165,0
chrII	126263	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1364,153,0
chrII	126335	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.55;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1089,123,0
chrII	126692	.	G	T	2002	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.9608;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.64;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2035,225,0
chrII	126836	.	G	A	1444	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.78;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1477,162,0
chrII	127166	.	G	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.6040;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.85;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1621,177,0
chrII	127964	.	C	T	1886	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.9795;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.45;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1919,207,0
chrII	128257	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.6400;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.190;QD=15.81;ReadPosRankSum=1.607;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1345,147,0
chrII	128423	.	G	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.27;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1259,135,0
chrII	128479	.	T	G	980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-0.589;QD=15.08;ReadPosRankSum=2.032;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1013,111,0
chrII	128480	.	T	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=15.58;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1046,114,0
chrII	128547	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.16;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1424,156,0
chrII	128669	.	A	G	1709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=3.770;HaplotypeScore=5.1743;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.278;QD=20.59;ReadPosRankSum=1.604;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,80:83:99:1742,195,0
chrII	129254	.	C	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.85;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1513,159,0
chrII	129308	.	T	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.61;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1414,156,0
chrII	129347	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.53;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1166,126,0
chrII	129386	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.26;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1311,144,0
chrII	129437	.	G	A	1823	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1856,198,0
chrII	129668	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.400;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.024;QD=19.04;ReadPosRankSum=0.878;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1423,156,0
chrII	129692	.	C	T	1571	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.40;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1604,171,0
chrII	129791	.	T	A	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.591;QD=20.33;ReadPosRankSum=1.535;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1863,207,0
chrII	130349	.	G	A	1886	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.49;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1919,204,0
chrII	130370	.	G	T	1623	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.19;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1656,177,0
chrII	130407	.	A	G	726	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.62;SB=-1.550e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:759,84,0
chrII	130769	.	C	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.8237;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.24;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1450,162,0
chrII	130988	.	T	C	887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.332;QD=18.10;ReadPosRankSum=1.585;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:920,102,0
chrII	131020	.	A	G	1411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=7.993;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.861;QD=21.06;ReadPosRankSum=2.376;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1444,156,0
chrII	131051	.	G	A	1488	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1431;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.58;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1521,171,0
chrII	131140	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.11;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1335,147,0
chrII	131705	.	G	A	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.729;QD=24.11;ReadPosRankSum=1.687;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1865,198,0
chrII	131783	.	G	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.26;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1213,135,0
chrII	132280	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.416;QD=21.14;ReadPosRankSum=1.663;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1090,120,0
chrII	132482	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.00;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1529,162,0
chrII	132564	.	T	C	1105	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.73;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1138,126,0
chrII	132576	.	G	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=17.57;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1052,111,0
chrII	132654	.	T	C	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=3.020;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=1.249;QD=22.12;ReadPosRankSum=2.323;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1758,192,0
chrII	132945	.	A	G	1951	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.95;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1984,216,0
chrII	132975	.	T	A	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=1.039;QD=18.34;ReadPosRankSum=1.689;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1500,168,0
chrII	133163	.	G	C	1897	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.85;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1930,210,0
chrII	133239	.	C	T	2016	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.00;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2049,219,0
chrII	133595	.	A	G	1001	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.135;QD=17.26;ReadPosRankSum=1.613;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1034,114,0
chrII	133612	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.02;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1024,114,0
chrII	133742	.	C	T	625	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:69:658,69,0
chrII	133779	.	C	T	1037	filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.19;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1070,111,0
chrII	133938	.	A	C	979	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=41.2831;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.31;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,40:42:99:1012,114,0
chrII	134090	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.80;SB=-1.370e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1220,138,0
chrII	135183	.	A	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.81;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1607,180,0
chrII	135214	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.07;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1814,192,0
chrII	135402	.	C	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1052,114,0
chrII	135630	.	T	A	2099	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.3446;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.18;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2132,237,0
chrII	135667	.	A	C	1761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=14.3752;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.493;QD=20.24;ReadPosRankSum=1.692;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1794,195,0
chrII	135827	.	G	A	844	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.96;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:877,93,0
chrII	135923	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.35;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1581,177,0
chrII	136582	.	C	G	956	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:989,108,0
chrII	136632	.	T	G	1628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.350;QD=24.30;ReadPosRankSum=2.303;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1661,183,0
chrII	136840	.	A	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.83;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1243,132,0
chrII	137194	.	C	T	2470	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.87;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2503,273,0
chrII	137272	.	T	C	1715	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=16.65;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1748,189,0
chrII	137341	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.39;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1552,165,0
chrII	137745	.	A	G	842	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:99:875,99,0
chrII	137801	.	T	C	999	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1032,114,0
chrII	137859	.	T	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.19;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1426,156,0
chrII	137868	.	A	G	1401	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.01;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1434,159,0
chrII	137948	.	A	G	1114	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=20.25;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1147,126,0
chrII	137954	.	A	G	1028	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.598;QD=18.69;ReadPosRankSum=0.346;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1061,100,0
chrII	138346	.	T	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.2215;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.43;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1360,153,0
chrII	138529	.	G	T	2050	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9389;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.81;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2083,222,0
chrII	138734	.	C	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6096;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.01;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1402,150,0
chrII	138835	.	A	G	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.178;QD=20.69;ReadPosRankSum=1.594;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1585,174,0
chrII	139079	.	T	G	1236	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1269,141,0
chrII	140021	.	C	T	1146	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.04;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1179,126,0
chrII	140061	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.07;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1297,141,0
chrII	140131	.	T	C	899	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:932,102,0
chrII	140383	.	A	G	882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.745;HaplotypeScore=3.5548;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.808;QD=19.60;ReadPosRankSum=1.655;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:915,102,0
chrII	140643	.	C	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.37;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1172,123,0
chrII	140863	.	G	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.04;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1155,129,0
chrII	141015	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.729;QD=18.61;ReadPosRankSum=-1.003;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1447,132,0
chrII	141175	.	C	T	1415	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=18.14;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1448,156,0
chrII	141178	.	T	C	1485	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=18.56;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1518,162,0
chrII	141191	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=16.13;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1291,144,0
chrII	141207	.	A	G	931	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.11;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:964,105,0
chrII	141215	.	C	T	838	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=11.32;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:871,99,0
chrII	141553	.	C	T	1664	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=21.89;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1697,180,0
chrII	141579	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=19.46;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1570,171,0
chrII	141987	.	A	T	3293.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.3316;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.456;QD=23.86;ReadPosRankSum=1.682;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:1,137:138:99:3293,348,0
chrII	142133	.	C	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.52;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1907,207,0
chrII	142181	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.22;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1254,138,0
chrII	142186	.	G	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.38;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1312,141,0
chrII	142208	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.78;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1235,132,0
chrII	142364	.	A	G	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.208;QD=23.23;ReadPosRankSum=1.490;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2031,222,0
chrII	142625	.	C	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.16;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1717,192,0
chrII	142804	.	C	G	1338	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.33;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1371,150,0
chrII	142980	.	G	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.8211;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.00;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1373,147,0
chrII	143298	.	A	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.97;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1572,168,0
chrII	143327	.	C	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.35;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1438,156,0
chrII	143335	.	C	G	1436	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.18;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1469,159,0
chrII	143491	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.09;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1257,138,0
chrII	143613	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.84;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1295,144,0
chrII	143759	.	A	T	803	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.25;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:836,96,0
chrII	144151	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.33;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1249,132,0
chrII	144820	.	T	G	1661	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.57;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1694,186,0
chrII	144853	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.23;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1449,162,0
chrII	144937	.	T	C	1472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.433;QD=20.16;ReadPosRankSum=1.636;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1505,168,0
chrII	144991	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.87;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1588,171,0
chrII	145108	.	T	C	1656	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.077;QD=22.38;ReadPosRankSum=1.685;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1689,186,0
chrII	145474	.	A	G	1383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.226;DP=70;Dels=0.00;FS=13.504;HaplotypeScore=9.7105;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.202;QD=19.76;ReadPosRankSum=3.327;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:4,66:70:99:1416,156,0
chrII	145486	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.96;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1186,129,0
chrII	145980	.	G	T	1279	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1658;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.32;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1312,144,0
chrII	146099	.	C	T	812	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;QD=12.69;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:90:845,90,0
chrII	146107	.	C	A	650	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=10.83;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:75:683,75,0
chrII	146113	.	A	T	582	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;QD=9.70;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:66:615,66,0
chrII	146114	.	C	T	578	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.27;MQ0=0;QD=9.63;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:66:611,66,0
chrII	146129	.	T	A	481	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=7.63;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:54:514,54,0
chrII	146169	.	G	A	769	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=15.69;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:802,87,0
chrII	146217	.	T	G	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.058;QD=21.08;ReadPosRankSum=1.675;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1298,141,0
chrII	146248	.	A	G	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5998;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.173;QD=20.05;ReadPosRankSum=1.559;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1236,135,0
chrII	146312	.	C	G	1089	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.11;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1122,126,0
chrII	146333	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.72;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1325,141,0
chrII	146444	.	C	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=22.69;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1712,183,0
chrII	146609	.	G	A	1123	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.80;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1156,123,0
chrII	146672	.	G	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.14;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1140,120,0
chrII	146699	.	G	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.62;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1526,159,0
chrII	146992	.	C	T	1969	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.92;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:2002,213,0
chrII	147197	.	A	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.43;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1962,207,0
chrII	147484	.	A	G	2453	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.59;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2486,270,0
chrII	149246	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.450;QD=20.27;ReadPosRankSum=1.591;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1026,114,0
chrII	150654	.	A	G	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.119;QD=18.71;ReadPosRankSum=1.696;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1848,201,0
chrII	152366	.	T	A	1384	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.62;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1417,153,0
chrII	152612	.	A	G	753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;MQRankSum=-0.363;QD=17.51;ReadPosRankSum=1.652;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:87:786,87,0
chrII	152618	.	C	T	785	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=16.35;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:818,87,0
chrII	152624	.	C	T	650	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=14.44;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:683,75,0
chrII	152750	.	A	C	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=69;Dels=0.00;FS=2.624;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.574;QD=19.52;ReadPosRankSum=2.781;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1380,153,0
chrII	152894	.	A	G	956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.621;QD=15.42;ReadPosRankSum=1.621;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:989,108,0
chrII	153007	.	C	T	856	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.88;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:889,96,0
chrII	153027	.	C	T	894	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.79;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:927,99,0
chrII	155086	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=73;Dels=0.00;FS=13.276;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.431;QD=19.29;ReadPosRankSum=2.848;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1441,159,0
chrII	155135	.	A	G	1914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.438;QD=21.03;ReadPosRankSum=1.694;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1947,213,0
chrII	155591	.	C	T	2456	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.9289;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.97;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,120:123:99:2489,279,0
chrII	155739	.	T	G	1177	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1210,129,0
chrII	155783	.	A	G	1507	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7878;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.84;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1540,171,0
chrII	155846	.	C	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.75;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1939,207,0
chrII	155972	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.86;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1199,129,0
chrII	156194	.	C	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.23;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1821,195,0
chrII	156203	.	C	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.27;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1883,204,0
chrII	156261	.	T	G	1613	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.76;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1646,180,0
chrII	157991	.	G	A	2275	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.50;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2308,255,0
chrII	158114	.	A	G	2632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=115;Dels=0.00;FS=4.037;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.729;QD=22.89;ReadPosRankSum=1.702;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:1,113:115:99:2665,291,0
chrII	158456	.	G	A	3354.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.51;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3354,360,0
chrII	158475	.	C	T	3186	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.10;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:3219,342,0
chrII	158591	.	C	T	2127	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.82;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2160,231,0
chrII	158606	.	T	C	1955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-0.717;QD=16.85;ReadPosRankSum=1.702;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:1988,222,0
chrII	158800	.	G	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.49;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1660,183,0
chrII	158803	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=95;Dels=0.00;FS=2.601;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.581;QD=17.17;ReadPosRankSum=2.861;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:3,92:95:99:1664,183,0
chrII	158953	.	G	A	1926	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.26;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1959,207,0
chrII	159139	.	T	G	1285	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.10;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,67:71:99:1318,147,0
chrII	159397	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.70;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1325,144,0
chrII	159427	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=73;Dels=0.00;FS=4.041;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.391;QD=17.62;ReadPosRankSum=1.683;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:99:1319,147,0
chrII	159595	.	T	C	862	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.2887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=15.96;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:895,99,0
chrII	159857	.	C	G	874	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.60;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:99:907,99,0
chrII	160143	.	T	G	984	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.36;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1017,111,0
chrII	160810	.	T	G	1434	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.78;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1467,159,0
chrII	161272	.	C	T	2000	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.69;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2033,219,0
chrII	161484	.	T	G	4658.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=6.5115;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.360;QD=23.53;ReadPosRankSum=-1.240;SB=-2.088e+03	GT:AD:DP:GQ:PL	1/1:1,196:198:99:4658,513,0
chrII	161687	.	T	C	2293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=5.588;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.181;QD=21.43;ReadPosRankSum=1.699;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,105:107:99:2326,255,0
chrII	162420	.	T	C	1603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=88;Dels=0.00;FS=5.744;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.667;QD=18.22;ReadPosRankSum=2.851;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1636,180,0
chrII	162773	.	T	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.99;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1754,198,0
chrII	163080	.	G	A	2262	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.86;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2295,240,0
chrII	163180	.	C	T	1378	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.13;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1411,153,0
chrII	163349	.	G	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.14;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1524,165,0
chrII	163497	.	A	G	1869	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=6.515;HaplotypeScore=6.7530;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.135;QD=22.79;ReadPosRankSum=2.390;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1902,207,0
chrII	163854	.	T	C	1639	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.23;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1672,183,0
chrII	163967	.	A	G	1129	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=17.64;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1162,126,0
chrII	163989	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.59;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1613,177,0
chrII	164147	.	C	T	2072	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.28;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2105,225,0
chrII	164419	.	T	C	2747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=125;Dels=0.00;FS=3.045;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.704;QD=21.98;ReadPosRankSum=1.704;SB=-1.584e+03	GT:AD:DP:GQ:PL	1/1:1,124:125:99:2780,309,0
chrII	164828	.	C	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.74;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1045,114,0
chrII	164914	.	A	G	1020	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1053,114,0
chrII	164995	.	T	G	1030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.866;QD=18.07;ReadPosRankSum=1.670;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1063,117,0
chrII	165048	.	C	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8175;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.97;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2030,222,0
chrII	165107	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.77;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1604,180,0
chrII	165259	.	G	A	943	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.43;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:976,105,0
chrII	165525	.	G	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.22;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1363,150,0
chrII	165729	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.9000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.058;QD=21.16;ReadPosRankSum=0.808;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1324,147,0
chrII	165877	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.372;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.525;QD=18.10;ReadPosRankSum=1.663;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:938,102,0
chrII	166019	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=23.50;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1443,159,0
chrII	166311	.	C	T	1045	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=18.33;SB=-7.301e+01	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1078,117,0
chrII	166544	.	G	A	495	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.57;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:57:528,57,0
chrII	166572	.	C	T	584	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.86;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:66:617,66,0
chrII	166703	.	G	A	945	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.23;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:978,105,0
chrII	166816	.	C	T	710	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=18.68;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:743,81,0
chrII	166909	.	C	G	874	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.60;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,42:47:99:907,102,0
chrII	167174	.	A	G	1331	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.56;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1364,153,0
chrII	167373	.	C	T	2151	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.18;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2184,228,0
chrII	167426	.	G	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.04;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.24;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1551,171,0
chrII	167527	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.07;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1177,132,0
chrII	167897	.	A	G	986	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.48;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1019,114,0
chrII	167998	.	G	A	184.03	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;QD=4.00;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:24:217,24,0
chrII	168012	.	T	A	560	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=10.18;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:63:593,63,0
chrII	168036	.	A	C	880	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.1756;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;MQRankSum=1.577;QD=12.94;ReadPosRankSum=-0.905;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:913,102,0
chrII	168065	.	T	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.09;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1824,198,0
chrII	168150	.	C	G	2236	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.79;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2269,252,0
chrII	168194	.	G	A	1028	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.04;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1061,111,0
chrII	168448	.	T	C	4122.01	PASS	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=23.03;SB=-1.919e+03	GT:AD:DP:GQ:PL	1/1:0,178:179:99:4122,447,0
chrII	168467	.	T	G	3909.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=171;Dels=0.00;FS=3.638;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.010;QD=22.86;ReadPosRankSum=1.712;SB=-1.939e+03	GT:AD:DP:GQ:PL	1/1:1,170:171:99:3909,429,0
chrII	168653	.	G	A	1259	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.67;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1292,135,0
chrII	168711	.	C	T	2168	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=21.47;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2201,234,0
chrII	168731	.	A	G	1880	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=18.99;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1913,210,0
chrII	168747	.	A	G	2074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=0.387;QD=19.94;ReadPosRankSum=1.497;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:1,102:104:99:2107,228,0
chrII	168775	.	A	T	1781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.443;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=-0.711;QD=18.75;ReadPosRankSum=1.623;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1814,195,0
chrII	168802	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.83;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1798,195,0
chrII	169100	.	A	G	2717	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0445;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.45;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2750,303,0
chrII	169483	.	A	G	3280.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=150;Dels=0.00;FS=2.889;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.369;QD=21.87;ReadPosRankSum=2.335;SB=-1.670e+03	GT:AD:DP:GQ:PL	1/1:2,148:150:99:3280,360,0
chrII	169496	.	G	C	3233.06	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.14;SB=-1.568e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3265,360,0
chrII	169566	.	G	T	1457	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=19.43;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1490,162,0
chrII	169589	.	A	G	1394	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=24.89;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1427,156,0
chrII	169621	.	C	T	1029	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=21.44;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1062,120,0
chrII	169820	.	G	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.58;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1594,171,0
chrII	169875	.	T	C	838	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=12.89;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:96:871,96,0
chrII	170120	.	G	T	1265	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.2463;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=14.88;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1298,147,0
chrII	170167	.	C	G	1174	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4060;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.08;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1207,132,0
chrII	170206	.	G	T	911	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=19.80;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:944,102,0
chrII	170207	.	C	T	918	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=19.96;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:951,102,0
chrII	170208	.	C	T	917	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=19.93;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:950,102,0
chrII	170320	.	A	C	823	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.86;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:96:856,96,0
chrII	170442	.	T	C	882	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.51;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:915,99,0
chrII	170790	.	T	C	2286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.504;QD=24.85;ReadPosRankSum=1.656;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:2319,255,0
chrII	171183	.	G	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.88;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1557,168,0
chrII	171433	.	A	G	2520	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.12;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2553,288,0
chrII	171570	.	A	G	1707	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.07;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1740,192,0
chrII	171612	.	G	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.56;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1287,144,0
chrII	171729	.	T	C	1934	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.73;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1967,216,0
chrII	172028	.	G	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.43;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1504,168,0
chrII	172038	.	T	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.01;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1462,162,0
chrII	172081	.	A	T	1697	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.9705;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.95;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1730,183,0
chrII	172113	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.854;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.153;QD=21.01;ReadPosRankSum=1.681;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1462,159,0
chrII	172141	.	G	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.79;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1367,153,0
chrII	172152	.	G	A	1425	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.75;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1458,162,0
chrII	172223	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.04;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1386,150,0
chrII	172245	.	C	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.05;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1585,180,0
chrII	172262	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=15.25;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1314,141,0
chrII	172301	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=14.56;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1547,171,0
chrII	172322	.	G	T	1118	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=14.52;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1151,126,0
chrII	172323	.	T	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=42.66;MQ0=0;QD=15.19;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1172,126,0
chrII	172338	.	T	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=15.37;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1186,129,0
chrII	172405	.	C	T	1205	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.42;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1238,132,0
chrII	172488	.	A	C	2288	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3052;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=24.08;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,90:95:99:2321,255,0
chrII	173028	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.83;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1366,147,0
chrII	173043	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.71;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1118,123,0
chrII	173340	.	T	C	1575	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-1.635;QD=22.18;ReadPosRankSum=1.683;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1608,180,0
chrII	173659	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.184;DP=65;Dels=0.00;FS=6.226;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.551;QD=21.29;ReadPosRankSum=2.374;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1417,153,0
chrII	174030	.	G	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.31;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1475,162,0
chrII	174060	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.741;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.659;QD=19.46;ReadPosRankSum=1.683;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1415,159,0
chrII	175409	.	A	G	1698	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.15;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1731,189,0
chrII	175439	.	G	A	1494	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=15.56;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1527,168,0
chrII	175505	.	C	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9758;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.32;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1907,204,0
chrII	175526	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.87;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1641,183,0
chrII	175538	.	T	C	1766	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.20;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1799,198,0
chrII	175784	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.00;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1059,117,0
chrII	175964	.	T	C	1422	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.22;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1455,156,0
chrII	176084	.	T	C	1745	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8439;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.53;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1778,195,0
chrII	176684	.	C	T	1291	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.17;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1324,144,0
chrII	177622	.	G	A	2247	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2480;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.27;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2280,246,0
chrII	177793	.	G	A	2428	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2461,264,0
chrII	178351	.	C	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.03;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1253,132,0
chrII	178588	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.4296;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.97;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:70:99:1501,159,0
chrII	178701	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.24;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1288,138,0
chrII	179076	.	A	G	1047	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=57;Dels=0.00;FS=4.058;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.237;QD=18.37;ReadPosRankSum=1.670;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1080,117,0
chrII	179233	.	T	C	983	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.25;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1016,111,0
chrII	179248	.	A	G	970	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=17.64;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1003,111,0
chrII	179257	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.6308;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=17.20;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:962,102,0
chrII	179266	.	A	G	807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=51;Dels=0.00;FS=6.295;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=1.693;QD=15.82;ReadPosRankSum=2.350;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:2,47:51:93:840,93,0
chrII	180070	.	T	G	2262	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.96;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2295,249,0
chrII	180133	.	C	T	2331	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.99;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2364,261,0
chrII	180168	.	A	G	2192	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.07;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2225,240,0
chrII	180244	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.118;QD=21.45;ReadPosRankSum=1.676;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1363,150,0
chrII	180312	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.85;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1202,132,0
chrII	180379	.	A	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=16.38;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1065,120,0
chrII	180697	.	A	G	1209	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.50;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1242,135,0
chrII	180832	.	G	T	642	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=15.66;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:72:675,72,0
chrII	180833	.	G	C	615	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=15.00;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:72:648,72,0
chrII	180834	.	A	C	619	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=15.47;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:72:652,72,0
chrII	180875	.	T	C	1187	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.46;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1220,132,0
chrII	181175	.	T	G	2485	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.89;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2518,279,0
chrII	181272	.	G	A	1695	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.71;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1728,183,0
chrII	181279	.	C	T	1796	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.64;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1829,192,0
chrII	181425	.	A	C	1928	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.6915;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.96;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1961,213,0
chrII	181870	.	C	T	2813	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.68;SB=-1.540e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:99:2846,303,0
chrII	182128	.	T	C	1310	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.876;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.689;QD=15.78;ReadPosRankSum=1.649;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1343,147,0
chrII	182137	.	G	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.74;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1551,165,0
chrII	182323	.	C	G	1966	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.2248;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.48;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,93:96:99:1999,219,0
chrII	182436	.	T	C	1018	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.21;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1051,117,0
chrII	182892	.	G	A	1238	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.48;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1271,138,0
chrII	182901	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=15.22;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1083,120,0
chrII	183084	.	A	C	966	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.32;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:999,111,0
chrII	183117	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.00;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1023,111,0
chrII	183198	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.162;QD=21.30;ReadPosRankSum=1.678;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1396,153,0
chrII	183456	.	A	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.29;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1222,135,0
chrII	183459	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.42;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1237,132,0
chrII	183619	.	T	C	1915	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.04;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1948,216,0
chrII	183810	.	C	T	2628	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.27;SB=-1.508e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2661,282,0
chrII	183889	.	C	T	2820	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.6259;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.31;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2853,306,0
chrII	184146	.	T	C	2806	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.00;SB=-1.623e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2839,309,0
chrII	184236	.	G	C	2227	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.81;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2260,246,0
chrII	184249	.	T	C	1889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.106;QD=18.89;ReadPosRankSum=1.626;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,97:100:99:1922,210,0
chrII	184343	.	T	C	1056	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.86;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1089,120,0
chrII	184372	.	C	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.26;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1381,147,0
chrII	184388	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.96;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1569,165,0
chrII	184606	.	C	A	1614	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.74;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1647,174,0
chrII	184932	.	A	C	1383	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.48;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1416,153,0
chrII	184941	.	T	A	1358	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.86;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1391,147,0
chrII	185376	.	G	A	941	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.45;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:974,102,0
chrII	185442	.	C	G	697	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.91;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:730,78,0
chrII	185478	.	C	G	857	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.48;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:890,99,0
chrII	185492	.	C	T	1113	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.40;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1146,123,0
chrII	185526	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.32;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1579,174,0
chrII	185579	.	A	G	2113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.226;QD=22.72;ReadPosRankSum=1.694;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2146,234,0
chrII	185746	.	A	G	897	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.42;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:930,99,0
chrII	185762	.	T	C	857	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.55;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:99:890,99,0
chrII	185891	.	T	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.45;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1320,141,0
chrII	185922	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.04;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1443,159,0
chrII	185954	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=6.322;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.883;QD=19.69;ReadPosRankSum=2.383;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1490,168,0
chrII	185979	.	T	A	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;DP=83;Dels=0.00;FS=8.400;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=-0.161;QD=18.10;ReadPosRankSum=3.347;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:4,79:83:99:1535,171,0
chrII	186008	.	T	G	2597	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.01;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2630,291,0
chrII	186049	.	T	A	3451.01	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=25.19;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3451,369,0
chrII	186067	.	A	G	3142	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.10;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3175,354,0
chrII	186185	.	G	A	2007	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.73;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:2040,219,0
chrII	186210	.	G	C	1874	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.15;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1907,210,0
chrII	186253	.	A	G	2147	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.07;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2180,240,0
chrII	186366	.	A	G	2186	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=17.77;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2219,243,0
chrII	186379	.	T	C	2366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.946;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-1.598;QD=18.20;ReadPosRankSum=1.652;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:1,128:130:99:2399,267,0
chrII	186397	.	T	C	2524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=7.942;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-1.039;QD=19.57;ReadPosRankSum=2.412;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:2,127:129:99:2557,279,0
chrII	186424	.	A	G	2931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=152;Dels=0.00;FS=2.858;HaplotypeScore=7.3361;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-2.043;QD=19.28;ReadPosRankSum=2.336;SB=-1.517e+03	GT:AD:DP:GQ:PL	1/1:2,149:152:99:2964,330,0
chrII	186525	.	A	G	2069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.386;QD=20.69;ReadPosRankSum=1.697;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2102,234,0
chrII	186623	.	C	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.31;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1589,168,0
chrII	186648	.	C	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0270;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.93;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1360,150,0
chrII	186709	.	A	T	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.071;QD=18.44;ReadPosRankSum=1.685;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1379,150,0
chrII	186753	.	G	A	1610	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=17.69;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1643,183,0
chrII	186759	.	G	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=17.87;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1677,186,0
chrII	186778	.	A	G	1592	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=17.30;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1625,180,0
chrII	186915	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=2.926;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.648;QD=18.59;ReadPosRankSum=2.323;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:2,76:79:99:1502,165,0
chrII	187153	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=21.38;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1508,162,0
chrII	187157	.	G	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=20.59;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1433,153,0
chrII	187472	.	G	T	879	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.54;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:912,99,0
chrII	187788	.	C	T	1393	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.11;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1426,153,0
chrII	187873	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.347;QD=22.09;ReadPosRankSum=1.512;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1447,162,0
chrII	188701	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.66;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1784,189,0
chrII	188734	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=3.198;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.122;QD=15.99;ReadPosRankSum=1.537;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1184,126,0
chrII	188743	.	G	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.07;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1388,150,0
chrII	189163	.	A	C	1735	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.42;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1768,195,0
chrII	189263	.	T	C	1812	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.07;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1845,201,0
chrII	189739	.	G	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.07;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1279,144,0
chrII	190246	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.53;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1552,165,0
chrII	190255	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.79;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1558,171,0
chrII	190308	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;MQRankSum=0.854;QD=19.04;ReadPosRankSum=-0.512;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1385,150,0
chrII	190351	.	C	T	1177	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.58;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1210,129,0
chrII	190355	.	C	T	1190	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=17.00;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1223,129,0
chrII	190452	.	A	G	1551	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.88;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1584,174,0
chrII	190737	.	A	T	1426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-0.594;QD=19.53;ReadPosRankSum=1.237;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1459,156,0
chrII	190816	.	G	A	1857	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.85;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1890,207,0
chrII	190944	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.148;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=0.271;QD=23.09;ReadPosRankSum=1.678;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1511,165,0
chrII	190980	.	G	C	1612	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=22.70;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1645,183,0
chrII	191066	.	C	T	1023	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=15.74;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1056,111,0
chrII	191084	.	T	A	495	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=9.00;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:57:528,57,0
chrII	191087	.	A	G	484	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=10.08;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:57:517,57,0
chrII	191088	.	A	G	539	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=11.00;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:63:572,63,0
chrII	191090	.	T	G	503	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.096;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=-1.732;QD=9.86;ReadPosRankSum=1.597;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:60:536,60,0
chrII	191091	.	G	C	524	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=9.89;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:63:557,63,0
chrII	191207	.	T	C	691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;MQRankSum=-0.804;QD=12.12;ReadPosRankSum=1.423;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:78:724,78,0
chrII	191214	.	G	A	786	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=14.56;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:819,87,0
chrII	191222	.	C	T	690	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=13.80;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:78:723,78,0
chrII	191226	.	C	T	616	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=13.11;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:69:649,69,0
chrII	191228	.	C	T	612	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=13.02;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:69:645,69,0
chrII	191242	.	C	A	470	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.37;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:54:503,54,0
chrII	191281	.	A	G	714	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;MQRankSum=1.245;QD=11.16;ReadPosRankSum=1.678;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:81:747,81,0
chrII	191288	.	T	C	524	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=9.89;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:63:557,63,0
chrII	191289	.	A	G	528	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=9.96;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:63:561,63,0
chrII	191294	.	C	T	512	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=9.66;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:57:545,57,0
chrII	191298	.	T	A	470	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=1.102;QD=8.55;ReadPosRankSum=1.551;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:54:503,54,0
chrII	191304	.	C	A	448	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;QD=8.45;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:51:481,51,0
chrII	191311	.	A	C	512	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=9.66;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:60:545,60,0
chrII	191363	.	C	T	1034	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.63;MQ0=0;QD=17.23;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1067,114,0
chrII	191377	.	A	G	1021	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=15.95;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1054,120,0
chrII	191422	.	G	A	1016	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=18.47;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1049,114,0
chrII	191424	.	T	C	967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=4.058;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;MQRankSum=-1.237;QD=16.96;ReadPosRankSum=1.609;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1000,114,0
chrII	191470	.	A	T	1285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=0.029;QD=21.42;ReadPosRankSum=1.674;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1318,141,0
chrII	191521	.	G	C	1412	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=21.07;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1445,156,0
chrII	191528	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=21.12;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1617,171,0
chrII	191599	.	C	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=21.38;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1551,165,0
chrII	191751	.	C	T	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.088;QD=18.86;ReadPosRankSum=-0.264;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1146,120,0
chrII	192085	.	A	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.63;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1711,186,0
chrII	192289	.	G	C	1600	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.78;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1633,183,0
chrII	192591	.	C	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.21;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1781,189,0
chrII	193122	.	T	C	2064	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4359;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.472;QD=20.85;ReadPosRankSum=1.697;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2097,231,0
chrII	193513	.	C	T	4533.01	PASS	AC=2;AF=1.00;AN=2;DP=210;Dels=0.01;FS=0.000;HaplotypeScore=13.8374;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.59;SB=-1.646e+03	GT:AD:DP:GQ:PL	1/1:0,207:208:99:4533,478,0
chrII	193593	.	A	G	3063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.359;DP=180;Dels=0.03;FS=22.046;HaplotypeScore=118.7889;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.909;QD=17.02;ReadPosRankSum=3.399;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:4,170:174:99:3096,336,0
chrII	193664	.	T	C	1983	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2016,225,0
chrII	193891	.	G	C	2493	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3099;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=17.94;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2526,273,0
chrII	194226	.	C	T	1305	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.39;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1338,141,0
chrII	195009	.	C	T	1826	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.54;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1859,198,0
chrII	195168	.	A	G	1230	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=76;Dels=0.00;FS=9.313;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=-1.710;QD=16.18;ReadPosRankSum=3.245;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:4,72:76:99:1263,138,0
chrII	195177	.	T	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=16.56;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1209,138,0
chrII	195180	.	C	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=16.68;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1184,132,0
chrII	195719	.	G	A	2421	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1640;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.91;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,126:128:99:2454,264,0
chrII	195960	.	A	T	2497	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.70;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2530,273,0
chrII	196145	.	C	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1803;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.03;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1219,132,0
chrII	196155	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.815;QD=16.71;ReadPosRankSum=1.681;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1169,129,0
chrII	196206	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1526;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.024;QD=18.80;ReadPosRankSum=0.987;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1781,189,0
chrII	196417	.	A	G	1409	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=21.68;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1442,156,0
chrII	196581	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.48;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1197,135,0
chrII	196633	.	G	A	1614	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.81;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1647,177,0
chrII	196681	.	A	G	2261	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.07;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2294,252,0
chrII	196706	.	T	C	2530	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.474;QD=21.81;ReadPosRankSum=2.386;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:2,114:116:99:2563,273,0
chrII	196868	.	T	C	2100	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2133,234,0
chrII	196964	.	A	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=11.7987;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=15.81;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:1883,201,0
chrII	197035	.	A	G	3693.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=177;Dels=0.00;FS=2.580;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.237;QD=20.86;ReadPosRankSum=2.960;SB=-1.506e+03	GT:AD:DP:GQ:PL	1/1:3,171:177:99:3693,405,0
chrII	197250	.	C	A	1854	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.34;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1887,210,0
chrII	197460	.	T	C	755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=40;Dels=0.00;FS=7.570;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.953;QD=18.87;ReadPosRankSum=1.646;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:84:788,84,0
chrII	197464	.	T	C	735	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.93;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:768,84,0
chrII	197474	.	G	C	938	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=19.54;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:971,105,0
chrII	197588	.	C	G	987	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=18.62;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1020,111,0
chrII	197703	.	T	A	108.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.247;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.6818;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;MQRankSum=-1.550;QD=5.41;ReadPosRankSum=-3.742;SB=-6.126e+01	GT:AD:DP:GQ:PL	1/1:10,10:20:15:141,15,0
chrII	197731	.	A	G	187.03	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=10.39;SB=-7.704e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:24:220,24,0
chrII	197761	.	G	A	162.06	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=9.00;SB=-1.271e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:21:195,21,0
chrII	197816	.	T	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.70;MQ0=6;QD=0.95;SB=-1.098e+02	GT:AD:DP:GQ:PL	1/1:6,17:24:6:54,6,0
chrII	197825	.	G	T	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.17;MQ0=8;QD=1.03;SB=-1.118e+02	GT:AD:DP:GQ:PL	1/1:8,16:24:6:56,6,0
chrII	197969	.	C	T	697	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=5;QD=11.81;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:5,54:59:81:730,81,0
chrII	198003	.	C	T	1248	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=16.21;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1281,141,0
chrII	198029	.	A	G	905	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=15.88;SB=-1.560e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:938,102,0
chrII	198085	.	G	C	617	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=14.69;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:650,75,0
chrII	198086	.	T	C	604	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;MQRankSum=-1.155;QD=14.38;ReadPosRankSum=1.568;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:72:637,72,0
chrII	198093	.	A	G	568	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.330;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;MQRankSum=-0.083;QD=13.52;ReadPosRankSum=1.568;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:1,41:42:69:601,69,0
chrII	198095	.	A	G	601	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=14.66;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:72:634,72,0
chrII	198168	.	C	T	851	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=16.37;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:96:884,96,0
chrII	198180	.	C	T	984	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=20.08;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1017,108,0
chrII	198368	.	A	C	1960	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7739;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.53;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1993,219,0
chrII	198399	.	A	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=24.92;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1877,207,0
chrII	198512	.	A	G	1613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.178;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=1.294;QD=20.42;ReadPosRankSum=1.688;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1646,180,0
chrII	198526	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.03;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1597,174,0
chrII	198605	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.99;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1784,192,0
chrII	198672	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.91;MQ0=0;QD=23.94;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1733,186,0
chrII	198751	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.687;QD=23.60;ReadPosRankSum=1.677;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1520,165,0
chrII	198778	.	T	G	1345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=3.052;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-1.603;QD=20.07;ReadPosRankSum=2.303;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1378,147,0
chrII	198782	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.49;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1378,144,0
chrII	198826	.	A	G	965	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.08;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:998,111,0
chrII	199139	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.80;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:898,99,0
chrII	199390	.	T	C	833	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=14.61;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:93:866,93,0
chrII	199391	.	A	C	887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-1.347;QD=16.43;ReadPosRankSum=1.668;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:920,99,0
chrII	199514	.	C	T	844	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.81;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:93:877,93,0
chrII	199762	.	A	C	915	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.47;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:99:948,105,0
chrII	199961	.	A	G	1114	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.88;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1147,126,0
chrII	200008	.	C	T	1137	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.87;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1170,123,0
chrII	200483	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.3409;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.84;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1617,180,0
chrII	200522	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.66;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1582,174,0
chrII	200530	.	G	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.24;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1668,177,0
chrII	200968	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.89;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1269,135,0
chrII	201063	.	C	T	1664	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8554;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.19;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1697,180,0
chrII	201476	.	G	A	2248	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.04;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2281,243,0
chrII	201611	.	T	C	1754	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.485;QD=20.88;ReadPosRankSum=1.567;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1787,195,0
chrII	201647	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.57;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1305,138,0
chrII	201779	.	C	G	1626	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.87;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1659,180,0
chrII	201831	.	G	A	2099	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.82;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2132,231,0
chrII	201879	.	C	T	2142	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.03;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2175,231,0
chrII	202001	.	G	C	1044	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.88;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1077,120,0
chrII	202108	.	A	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.62;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1096,117,0
chrII	202227	.	T	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1574,168,0
chrII	202411	.	G	A	1026	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.94;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1059,111,0
chrII	202580	.	C	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.36;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1443,156,0
chrII	202724	.	T	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.19;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1347,147,0
chrII	202739	.	G	T	1150	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.91;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1183,126,0
chrII	203114	.	C	T	866	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.04;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:899,96,0
chrII	203566	.	T	C	644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.621;QD=20.77;ReadPosRankSum=1.621;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:75:677,75,0
chrII	203783	.	G	C	978	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,48:52:99:1011,111,0
chrII	203910	.	C	G	905	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=15.88;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:938,108,0
chrII	204725	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.12;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1279,141,0
chrII	204923	.	A	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.38;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1439,153,0
chrII	204924	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.62;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1387,150,0
chrII	204995	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.75;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1548,165,0
chrII	205079	.	T	C	964	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.19;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:997,108,0
chrII	205097	.	A	G	806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.405;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-1.582;QD=17.52;ReadPosRankSum=1.657;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:93:839,93,0
chrII	205151	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=20.50;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1386,147,0
chrII	205157	.	C	A	1409	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.72;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1442,153,0
chrII	205338	.	G	T	1646	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=22.86;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1679,177,0
chrII	205355	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.65;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1507,162,0
chrII	205382	.	T	C	1369	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=1.264;QD=18.50;ReadPosRankSum=1.685;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1402,156,0
chrII	205517	.	C	A	2443	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.95;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2476,267,0
chrII	205891	.	T	C	1754	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.16;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1787,198,0
chrII	206076	.	C	G	1305	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.48;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1338,150,0
chrII	207151	.	C	A	2671	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.9621;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.83;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2704,294,0
chrII	207220	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.5944;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.35;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1143,123,0
chrII	207891	.	A	G	1346	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.37;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1379,150,0
chrII	210006	.	T	C	989	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=15.45;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1022,114,0
chrII	210387	.	A	G	1211	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.43;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1244,135,0
chrII	210582	.	G	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.73;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1098,123,0
chrII	210974	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.449;QD=18.87;ReadPosRankSum=1.476;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1052,117,0
chrII	210990	.	G	A	1066	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1431;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.04;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1099,117,0
chrII	211332	.	G	A	1914	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.75;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1947,204,0
chrII	211581	.	C	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.85;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1672,177,0
chrII	212351	.	G	A	826	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.36;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:859,93,0
chrII	212495	.	G	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.9613;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.32;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1407,156,0
chrII	212638	.	T	C	2151	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.64;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2184,240,0
chrII	212810	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.90;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1167,129,0
chrII	212882	.	A	G	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.214;QD=17.29;ReadPosRankSum=1.693;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1606,174,0
chrII	212886	.	C	G	1643	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.48;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1676,186,0
chrII	213058	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.28;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1130,120,0
chrII	213466	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.27;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1057,117,0
chrII	213545	.	G	C	1281	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7461;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.66;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1314,147,0
chrII	213728	.	T	G	1243	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.12;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1276,138,0
chrII	214810	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.15;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1121,120,0
chrII	215962	.	G	A	913	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.02;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:946,108,0
chrII	216541	.	A	C	1798	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.193;DP=101;Dels=0.00;FS=5.323;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.029;QD=17.80;ReadPosRankSum=3.105;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:4,96:101:99:1831,204,0
chrII	216631	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.16;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1706,186,0
chrII	216794	.	T	C	1910	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.47;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1943,213,0
chrII	216962	.	G	C	2242	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.4935;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.67;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,111:114:99:2275,252,0
chrII	217015	.	G	C	2506	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.98;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,110:114:99:2539,276,0
chrII	217070	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.08;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1407,150,0
chrII	217109	.	T	C	1038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=4.997;HaplotypeScore=7.0858;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.688;QD=13.14;ReadPosRankSum=1.557;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1071,117,0
chrII	217637	.	G	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.66;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1701,180,0
chrII	217650	.	A	G	1599	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.27;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1632,183,0
chrII	217772	.	G	A	2240	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.36;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2273,246,0
chrII	217964	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.49;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1495,156,0
chrII	218315	.	T	C	3447.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.099;QD=24.10;ReadPosRankSum=2.415;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:2,140:143:99:3447,378,0
chrII	218375	.	C	T	2572	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.50;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2605,279,0
chrII	218666	.	G	A	2250	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.43;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2283,243,0
chrII	219096	.	C	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.69;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1451,153,0
chrII	219611	.	A	T	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.533;QD=19.88;ReadPosRankSum=1.466;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1067,114,0
chrII	220055	.	C	T	2410	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=26.48;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2443,255,0
chrII	220122	.	G	A	663	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=15.79;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:696,78,0
chrII	220136	.	C	T	768	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.86;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:801,87,0
chrII	220307	.	C	T	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.811;QD=23.52;ReadPosRankSum=0.855;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1938,207,0
chrII	220331	.	C	T	1941	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.57;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1974,216,0
chrII	220451	.	T	G	1803	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.72;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1836,204,0
chrII	221274	.	T	C	146.06	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.93;MQ0=19;QD=2.81;SB=-4.053e-02	GT:AD:DP:GQ:PL	1/1:10,42:52:21:179,21,0
chrII	221367	.	T	C	43.97	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.58;MQ0=53;QD=0.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:9:76,9,0
chrII	225536	.	A	G	182.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;DP=143;Dels=0.00;FS=15.681;HaplotypeScore=23.9059;MLEAC=2;MLEAF=1.00;MQ=7.33;MQ0=114;MQRankSum=4.219;QD=1.27;ReadPosRankSum=0.919;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:23,119:143:24:215,24,0
chrII	226979	.	T	C	320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;MQRankSum=-2.288;QD=4.16;ReadPosRankSum=2.385;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:2,75:77:39:353,39,0
chrII	227201	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=23.56;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1376,147,0
chrII	227328	.	G	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.07;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1719,189,0
chrII	227387	.	A	T	1393	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.19;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1426,153,0
chrII	227531	.	A	C	1482	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.16;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1515,171,0
chrII	227881	.	T	C	1550	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.37;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1583,174,0
chrII	228106	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.27;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1685,186,0
chrII	228251	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=78;Dels=0.00;FS=2.978;HaplotypeScore=8.7331;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.329;QD=20.82;ReadPosRankSum=2.354;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1657,183,0
chrII	228977	.	G	A	1040	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.61;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1073,114,0
chrII	229229	.	G	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.39;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1764,186,0
chrII	230037	.	A	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.16;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1404,153,0
chrII	231704	.	A	G	2316	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.5478;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.39;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2349,258,0
chrII	232465	.	G	T	2235	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=13.9060;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.29;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2268,240,0
chrII	232618	.	C	T	1988	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.39;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:2021,222,0
chrII	233269	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.58;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1631,177,0
chrII	233851	.	C	A	1422	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.88;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1455,156,0
chrII	234568	.	A	G	1180	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.26;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1213,132,0
chrII	234644	.	G	A	1315	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.23;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1348,144,0
chrII	234712	.	G	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.02;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1695,180,0
chrII	235113	.	C	T	1992	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.38;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:2025,213,0
chrII	235191	.	T	C	2278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.416;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;MQRankSum=-0.669;QD=22.55;ReadPosRankSum=1.698;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2311,255,0
chrII	235266	.	C	T	2016	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.40;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2049,216,0
chrII	235634	.	T	C	2852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.408;QD=23.38;ReadPosRankSum=2.892;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:3,118:122:99:2885,315,0
chrII	235877	.	A	C	4674.01	PASS	AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=5.9101;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.22;SB=-2.112e+03	GT:AD:DP:GQ:PL	1/1:0,193:193:99:4674,528,0
chrII	235916	.	C	T	4519.01	PASS	AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.02;SB=-2.721e+03	GT:AD:DP:GQ:PL	1/1:0,210:215:99:4519,481,0
chrII	235922	.	G	A	4310.01	PASS	AC=2;AF=1.00;AN=2;DP=221;Dels=0.00;FS=0.000;HaplotypeScore=7.3618;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.50;SB=-2.821e+03	GT:AD:DP:GQ:PL	1/1:0,221:221:99:4310,459,0
chrII	236256	.	T	A	1827	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.6081;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.91;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1860,198,0
chrII	236390	.	G	A	2012	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2045,225,0
chrII	237479	.	G	A	1295	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=17.99;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1328,144,0
chrII	237656	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.94;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1613,174,0
chrII	237660	.	T	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.7452;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.32;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1568,171,0
chrII	237729	.	A	G	824	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.115;QD=18.31;ReadPosRankSum=1.655;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:96:857,96,0
chrII	237821	.	C	T	2186	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=95.7493;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.02;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2219,240,0
chrII	237832	.	T	G	2185	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.42;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2218,246,0
chrII	237911	.	C	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.30;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1175,126,0
chrII	237971	.	A	T	567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.449;QD=21.00;ReadPosRankSum=1.605;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:1,26:27:66:600,66,0
chrII	238080	.	G	C	771	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.93;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:90:804,90,0
chrII	238097	.	C	T	982	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=47.2245;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.53;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1015,114,0
chrII	238137	.	T	C	1181	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1214,135,0
chrII	238224	.	T	A	246	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=13.67;SB=-1.465e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:30:279,30,0
chrII	238239	.	G	A	49.97	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=9.99;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,5:5:9:82,9,0
chrII	238276	.	T	G	401	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=13.83;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:48:434,48,0
chrII	238287	.	A	C	689	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=15.66;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,43:44:81:722,81,0
chrII	238346	.	T	G	1505	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.510;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.280;QD=20.34;ReadPosRankSum=3.704;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:5,69:74:99:1538,168,0
chrII	238452	.	A	G	1441	filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.28;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1474,162,0
chrII	238608	.	A	C	1941	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=19.61;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:1974,213,0
chrII	238611	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=19.74;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1968,219,0
chrII	238944	.	T	A	2966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=141;Dels=0.01;FS=4.771;HaplotypeScore=5.7183;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.682;QD=21.04;ReadPosRankSum=1.431;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:1,139:140:99:2999,303,0
chrII	239528	.	A	C	1824	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.97;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1857,204,0
chrII	239597	.	C	T	2248	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.72;SB=-1.370e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2281,246,0
chrII	239706	.	G	A	2634	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.07;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2667,288,0
chrII	239951	.	A	G	1604	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.97;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1637,180,0
chrII	240048	.	C	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.35;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1349,144,0
chrII	240729	.	C	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.98;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1092,120,0
chrII	241221	.	T	C	574	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.79;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:66:607,66,0
chrII	241415	.	C	T	1277	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.06;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1310,147,0
chrII	241422	.	T	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.25;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1284,141,0
chrII	241482	.	C	T	1018	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.4796;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.85;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1051,114,0
chrII	241546	.	A	G	551	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.96;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:63:584,63,0
chrII	242398	.	G	A	1655	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.584;QD=23.64;ReadPosRankSum=-1.732;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1688,159,0
chrII	242434	.	G	A	1708	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.40;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1741,189,0
chrII	243486	.	G	A	917	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=15.81;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:950,102,0
chrII	243495	.	A	G	904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.850;QD=16.14;ReadPosRankSum=1.669;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:937,105,0
chrII	243609	.	T	C	1427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=-0.464;QD=20.10;ReadPosRankSum=1.683;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1460,162,0
chrII	244779	.	A	G	2569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=111;Dels=0.00;FS=3.842;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.397;QD=23.14;ReadPosRankSum=1.605;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:1,108:111:99:2602,285,0
chrII	245034	.	C	T	1930	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.74;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1963,204,0
chrII	245073	.	A	G	1624	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.65;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1657,183,0
chrII	245211	.	G	A	2373	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=14.7284;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.77;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2406,258,0
chrII	245305	.	C	T	1962	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.30;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1995,216,0
chrII	245747	.	T	C	1406	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=15.28;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1439,159,0
chrII	245748	.	T	G	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.602;QD=15.40;ReadPosRankSum=1.657;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:2,91:93:99:1465,162,0
chrII	245872	.	A	G	2769	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.21;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,135:137:99:2802,300,0
chrII	245877	.	G	A	2589	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.76;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2622,273,0
chrII	246027	.	T	G	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=4.717;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.559;QD=21.84;ReadPosRankSum=1.689;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1780,195,0
chrII	246058	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.14;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1443,159,0
chrII	246313	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=14.07;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1201,129,0
chrII	246331	.	A	G	1018	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=14.34;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1051,117,0
chrII	247040	.	C	T	2504	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.36;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2537,273,0
chrII	247069	.	T	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.01;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1882,201,0
chrII	247234	.	A	G	1385	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.72;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1418,159,0
chrII	247399	.	A	G	1235	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.67;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1268,141,0
chrII	247522	.	G	A	791	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.29;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,38:41:87:824,87,0
chrII	247531	.	C	T	864	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.57;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:897,99,0
chrII	247789	.	A	G	1737	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.44;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1770,192,0
chrII	247963	.	C	G	1371	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.48;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1404,153,0
chrII	248227	.	T	C	2537	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.65;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2570,279,0
chrII	248659	.	G	A	2410	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.74;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2443,258,0
chrII	248671	.	C	G	2227	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.83;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,99:102:99:2260,243,0
chrII	248728	.	A	G	2913	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.07;SB=-1.459e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2946,321,0
chrII	248918	.	C	T	2029	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.3233;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.06;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2062,225,0
chrII	249469	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.15;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1504,165,0
chrII	250316	.	G	A	3660.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.7509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-2.002e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3660,387,0
chrII	251004	.	A	T	1380	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=12.1717;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.773;QD=17.69;ReadPosRankSum=1.266;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1413,133,0
chrII	251055	.	G	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=6.0542;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.51;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1749,186,0
chrII	251134	.	G	T	1079	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.36;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1112,117,0
chrII	251135	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.89;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1087,117,0
chrII	251622	.	T	C	977	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=12.21;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1010,111,0
chrII	251820	.	G	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.42;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1340,147,0
chrII	252098	.	G	A	2137	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.49;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2170,231,0
chrII	252166	.	G	A	2671	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.93;SB=-1.612e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2704,297,0
chrII	252244	.	A	G	2389	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=3.023;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.675;QD=17.96;ReadPosRankSum=2.394;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:2,131:133:99:2422,264,0
chrII	252271	.	T	C	2034	SnpCluster	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.83;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2067,231,0
chrII	252273	.	G	C	2101	SnpCluster	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=19.45;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2134,231,0
chrII	252279	.	G	A	1908	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.52;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1941,204,0
chrII	252385	.	A	G	1909	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.89;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1942,213,0
chrII	252504	.	G	T	2222	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.96;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2255,246,0
chrII	252589	.	T	C	1648	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.89;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1681,183,0
chrII	253219	.	G	A	1801	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.51;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1834,195,0
chrII	253251	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.71;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1835,195,0
chrII	254349	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.27;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1423,150,0
chrII	254436	.	T	C	1360	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.63;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1393,153,0
chrII	254578	.	C	T	2410	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.91;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2443,258,0
chrII	254899	.	T	A	3387.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=159;Dels=0.00;FS=5.112;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.795;QD=21.30;ReadPosRankSum=1.689;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:1,158:159:99:3387,369,0
chrII	254996	.	A	T	2518	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.93;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2551,282,0
chrII	255469	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.38;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1555,165,0
chrII	255736	.	T	C	1981	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.51;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2014,222,0
chrII	256414	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.28;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1033,114,0
chrII	256477	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.68;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1371,153,0
chrII	256564	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.04;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1309,141,0
chrII	256741	.	G	A	1393	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.35;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1426,150,0
chrII	256956	.	T	C	941	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;QD=22.95;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:974,108,0
chrII	257247	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=23.40;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1156,129,0
chrII	257304	.	A	G	1519	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.01;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1552,174,0
chrII	258007	.	A	G	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0480;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.528;QD=19.28;ReadPosRankSum=1.691;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1672,183,0
chrII	258040	.	A	G	1781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.972;QD=21.72;ReadPosRankSum=1.690;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1814,201,0
chrII	258153	.	T	C	1892	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.711;QD=24.26;ReadPosRankSum=1.688;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1925,210,0
chrII	258313	.	G	C	1477	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=10.8114;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.43;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1510,165,0
chrII	258513	.	A	G	3316.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=141;Dels=0.00;FS=17.153;HaplotypeScore=14.7746;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=1.094;QD=23.52;ReadPosRankSum=2.950;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:3,136:141:99:3316,369,0
chrII	258593	.	A	G	2403	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.1357;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=23.33;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2436,267,0
chrII	258851	.	T	C	2152	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=19.21;SB=-1.341e+03	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2185,237,0
chrII	258852	.	G	A	2221	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=20.19;SB=-1.385e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2254,240,0
chrII	258888	.	C	T	1646	SnpCluster	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=14.83;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1679,192,0
chrII	258896	.	A	G	1381	SnpCluster	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=14.24;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1414,156,0
chrII	258898	.	G	T	1376	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=14.48;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1409,150,0
chrII	258929	.	G	A	1504	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=12.75;SB=-1.580e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:1537,165,0
chrII	258961	.	A	G	1496	SnpCluster	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=0;QD=12.68;SB=-1.392e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:1529,162,0
chrII	258965	.	T	A	1501	SnpCluster	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=12.10;SB=-1.409e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:1534,168,0
chrII	258971	.	C	T	1538	SnpCluster	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=12.30;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:1571,168,0
chrII	259235	.	T	C	2640	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.4717;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=20.62;SB=-1.509e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2673,288,0
chrII	259410	.	A	C	2122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=101;Dels=0.00;FS=9.839;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;MQRankSum=-0.070;QD=21.01;ReadPosRankSum=2.851;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:3,98:101:99:2155,243,0
chrII	259419	.	T	C	1877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=3.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-1.218;QD=20.86;ReadPosRankSum=2.313;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1910,213,0
chrII	259438	.	A	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=21.76;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2013,219,0
chrII	259451	.	T	A	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=3.727;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;MQRankSum=-0.075;QD=21.12;ReadPosRankSum=1.694;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1976,216,0
chrII	259561	.	A	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=20.97;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1417,156,0
chrII	263153	.	C	T	54.97	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=3.93;SB=-9.813e-01	GT:AD:DP:GQ:PL	1/1:0,14:14:9:87,9,0
chrII	265664	.	C	T	4324.01	PASS	AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=12.0628;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=23.89;SB=-1.457e+03	GT:AD:DP:GQ:PL	1/1:0,181:181:99:4324,460,0
chrII	265714	.	G	A	3305.01	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=24.30;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:99:3305,351,0
chrII	265797	.	C	G	2197	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=21.97;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,97:100:99:2230,249,0
chrII	265831	.	A	G	2999	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=23.07;SB=-1.701e+03	GT:AD:DP:GQ:PL	1/1:0,128:130:99:3032,336,0
chrII	266206	.	T	C	3730.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=166;Dels=0.00;FS=8.268;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.141;QD=22.47;ReadPosRankSum=2.345;SB=-1.646e+03	GT:AD:DP:GQ:PL	1/1:2,163:166:99:3730,405,0
chrII	266250	.	A	T	3853.01	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.54;SB=-1.637e+03	GT:AD:DP:GQ:PL	1/1:0,157:157:99:3853,411,0
chrII	266324	.	T	C	1710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.520;QD=20.85;ReadPosRankSum=1.689;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:1,79:82:99:1743,192,0
chrII	266339	.	T	A	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-0.693;QD=19.52;ReadPosRankSum=1.694;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1790,189,0
chrII	266358	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.97;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1631,171,0
chrII	266478	.	G	A	1690	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=18.99;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1723,186,0
chrII	266509	.	A	G	1662	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.296;QD=19.79;ReadPosRankSum=1.648;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,81:84:99:1695,189,0
chrII	266551	.	C	G	1956	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.73;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1989,216,0
chrII	266673	.	C	T	2009	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.1321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.08;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2042,219,0
chrII	266791	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.83;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1168,126,0
chrII	267245	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.502;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.317;QD=18.27;ReadPosRankSum=1.683;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1330,144,0
chrII	267280	.	C	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.84;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1680,177,0
chrII	267475	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1442,156,0
chrII	267510	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6706;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.67;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1666,180,0
chrII	268137	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.28;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1203,126,0
chrII	268148	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=16.67;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1350,153,0
chrII	268319	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.71;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1249,138,0
chrII	268655	.	T	G	906	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=15.62;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:939,102,0
chrII	268778	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1143,129,0
chrII	268895	.	G	A	1001	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=15.64;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1034,108,0
chrII	268913	.	G	A	837	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=13.50;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:870,99,0
chrII	268925	.	C	T	669	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=10.45;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:75:702,75,0
chrII	268930	.	A	G	654	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=10.06;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:75:687,75,0
chrII	268949	.	T	C	510	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=9.11;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:63:543,63,0
chrII	269213	.	G	A	1548	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9219;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.88;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1581,174,0
chrII	269653	.	C	T	2222	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=80.9658;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=22.22;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2255,240,0
chrII	269891	.	T	C	969	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.63;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1002,108,0
chrII	269904	.	T	C	948	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.63;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:981,108,0
chrII	269946	.	T	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=14.78;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1245,138,0
chrII	269983	.	A	G	1161	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;MQRankSum=-0.365;QD=15.28;ReadPosRankSum=1.687;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1194,135,0
chrII	269986	.	G	A	1168	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=16.22;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1201,132,0
chrII	269987	.	C	T	1173	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=16.29;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1206,135,0
chrII	270046	.	G	A	837	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.7646;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=14.19;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:96:870,96,0
chrII	270285	.	G	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.39;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1134,126,0
chrII	271089	.	A	G	791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.073;QD=18.83;ReadPosRankSum=1.650;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:90:824,90,0
chrII	271598	.	C	T	2237	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.91;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2270,246,0
chrII	271912	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.02;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1168,123,0
chrII	273578	.	C	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.02;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1529,162,0
chrII	273772	.	T	C	2234	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.88;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2267,249,0
chrII	273781	.	A	G	2101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=1.449;QD=18.93;ReadPosRankSum=1.638;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:1,109:111:99:2134,214,0
chrII	273868	.	G	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=23.48;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1489,159,0
chrII	273923	.	A	G	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.441;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-1.732;QD=23.38;ReadPosRankSum=1.667;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1272,141,0
chrII	274076	.	G	C	1500	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=24.19;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1533,165,0
chrII	274152	.	T	C	591	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=12.31;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:69:624,69,0
chrII	274162	.	T	C	449	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=10.69;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:482,54,0
chrII	274206	.	T	G	238	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=7.44;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:30:271,30,0
chrII	274209	.	C	T	269	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=8.3994;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=7.91;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:33:302,33,0
chrII	274212	.	A	C	180.03	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=8.3994;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;MQRankSum=-1.223;QD=5.14;ReadPosRankSum=1.631;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:24:213,24,0
chrII	274225	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.928;DP=43;Dels=0.05;FS=3.776;HaplotypeScore=16.7586;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;MQRankSum=0.902;QD=0.28;ReadPosRankSum=3.098;SB=-1.208e+02	GT:AD:DP:GQ:PL	1/1:19,22:41:6:43,6,0
chrII	274298	.	T	A	443	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=12.66;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:51:476,51,0
chrII	274303	.	T	A	458	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=14.77;SB=-2.570e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:51:491,51,0
chrII	274352	.	A	G	680	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=17.00;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:713,81,0
chrII	274372	.	G	A	672	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=15.63;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:705,75,0
chrII	274375	.	A	G	616	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=14.33;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:649,72,0
chrII	274439	.	T	C	897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.075;QD=19.50;ReadPosRankSum=1.657;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:930,105,0
chrII	274460	.	T	C	1022	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.71;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1055,114,0
chrII	274553	.	A	G	691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=34;Dels=0.00;FS=4.260;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.758;QD=20.32;ReadPosRankSum=1.625;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:1,32:34:81:724,81,0
chrII	274625	.	C	T	884	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.26;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:917,102,0
chrII	274937	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1454,159,0
chrII	275968	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.16;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1540,171,0
chrII	276052	.	T	C	1158	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.63;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1191,129,0
chrII	276131	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=3.949;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.289;QD=20.40;ReadPosRankSum=1.684;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1522,168,0
chrII	276137	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.494;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.684;QD=20.46;ReadPosRankSum=1.687;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1588,174,0
chrII	276150	.	T	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.75;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1683,186,0
chrII	276361	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.93;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1229,138,0
chrII	276526	.	C	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.17;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1701,177,0
chrII	276576	.	G	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.58;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1345,144,0
chrII	276628	.	G	T	1098	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.26;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1131,123,0
chrII	276676	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=6.232;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.196;QD=18.67;ReadPosRankSum=2.372;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1228,138,0
chrII	276799	.	C	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.04;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1598,177,0
chrII	277566	.	G	T	2179	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.18;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2212,234,0
chrII	278884	.	G	C	2604	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.70;SB=-1.551e+03	GT:AD:DP:GQ:PL	1/1:0,117:120:99:2637,291,0
chrII	278927	.	A	G	2515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=141;Dels=0.00;FS=10.106;HaplotypeScore=7.9229;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-1.108;QD=17.84;ReadPosRankSum=2.936;SB=-1.589e+03	GT:AD:DP:GQ:PL	1/1:3,137:141:99:2548,285,0
chrII	278934	.	A	G	2403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.581;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-1.066;QD=18.48;ReadPosRankSum=1.705;SB=-1.393e+03	GT:AD:DP:GQ:PL	1/1:1,129:130:99:2436,270,0
chrII	279623	.	T	C	1498	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.71;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1531,171,0
chrII	279910	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1539,165,0
chrII	280259	.	A	C	1753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.126;QD=21.91;ReadPosRankSum=1.689;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1786,195,0
chrII	280418	.	C	T	2795	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.30;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2828,306,0
chrII	280684	.	G	A	5212.01	PASS	AC=2;AF=1.00;AN=2;DP=217;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.02;SB=-2.617e+03	GT:AD:DP:GQ:PL	1/1:0,216:217:99:5212,550,0
chrII	280810	.	A	C	1459	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1492,162,0
chrII	280848	.	C	T	991	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.43;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1024,108,0
chrII	280915	.	G	A	1991	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.11;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2024,216,0
chrII	280916	.	T	C	2004	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.04;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2037,219,0
chrII	281105	.	A	G	1596	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.13;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1629,177,0
chrII	281251	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=3.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.519;QD=20.64;ReadPosRankSum=1.679;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1395,153,0
chrII	281281	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.60;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1269,135,0
chrII	281826	.	C	T	932	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:965,108,0
chrII	282024	.	C	T	1490	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9638;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.87;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1523,165,0
chrII	282128	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.47;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1665,180,0
chrII	282657	.	C	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.62;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1367,150,0
chrII	283092	.	A	T	1541	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.79;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1574,168,0
chrII	283145	.	C	T	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.845;DP=89;Dels=0.00;FS=43.475;HaplotypeScore=36.5338;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=0.977;QD=0.42;ReadPosRankSum=-3.441;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,23:89:67:67,0,912
chrII	283424	.	C	T	4339.01	PASS	AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.48;SB=-2.398e+03	GT:AD:DP:GQ:PL	1/1:0,191:193:99:4339,462,0
chrII	283573	.	C	T	2904	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.20;SB=-1.651e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2937,315,0
chrII	283654	.	C	G	3129	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.58;SB=-1.688e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:3162,342,0
chrII	283729	.	G	C	3205.99	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.4087;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.74;SB=-1.374e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3239,354,0
chrII	283800	.	C	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.32;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1952,216,0
chrII	283860	.	G	A	2080	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2113,228,0
chrII	283935	.	A	G	2060	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=2.813;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.419;QD=21.24;ReadPosRankSum=2.399;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2093,231,0
chrII	284107	.	T	A	1953	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=-0.937;QD=17.59;ReadPosRankSum=2.359;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:2,109:111:99:1986,219,0
chrII	284108	.	C	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.85;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1997,216,0
chrII	284437	.	G	T	2212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.252;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.6836;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=1.561;QD=21.90;ReadPosRankSum=1.664;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2245,246,0
chrII	284893	.	T	C	1805	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.85;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1838,201,0
chrII	285666	.	T	C	1035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.854;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=20.29;ReadPosRankSum=1.597;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1068,117,0
chrII	285829	.	G	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.30;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1662,186,0
chrII	285832	.	C	T	1842	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.47;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1875,204,0
chrII	286002	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=10.2189;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.21;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1468,156,0
chrII	286036	.	C	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.3706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1381,150,0
chrII	286327	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.06;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1539,171,0
chrII	286468	.	T	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.66;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1506,162,0
chrII	286762	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.08;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1336,144,0
chrII	286855	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1560,168,0
chrII	286894	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.83;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1677,183,0
chrII	287113	.	G	A	1948	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.8642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.65;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1981,213,0
chrII	287483	.	G	A	1957	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.74;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1990,213,0
chrII	287551	.	A	G	1512	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.569;QD=17.79;ReadPosRankSum=1.651;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1545,174,0
chrII	287886	.	G	A	1119	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=15.33;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1152,123,0
chrII	288197	.	T	C	1636	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.53;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1669,183,0
chrII	288303	.	T	C	1247	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.34;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1280,141,0
chrII	288339	.	A	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.62;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1621,177,0
chrII	288498	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.60;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1269,135,0
chrII	288671	.	T	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.10;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1299,144,0
chrII	288717	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=20.74;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1775,189,0
chrII	288768	.	C	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=13.0691;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=13.94;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1441,159,0
chrII	288773	.	T	A	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.3540;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=-2.233;QD=12.97;ReadPosRankSum=2.329;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:1356,144,0
chrII	288780	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=13.36;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1342,150,0
chrII	288800	.	T	C	926	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=11.29;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:959,105,0
chrII	288809	.	A	C	1009	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=12.61;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1042,117,0
chrII	288880	.	G	A	690	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=15.68;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:723,78,0
chrII	288893	.	C	T	773	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.80;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:806,84,0
chrII	288970	.	T	C	959	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.4402;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=17.12;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:992,111,0
chrII	288986	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=16.70;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1052,117,0
chrII	289069	.	G	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=19.64;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1408,156,0
chrII	289101	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=20.33;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1456,159,0
chrII	289127	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;QD=19.19;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1434,162,0
chrII	289328	.	A	G	1080	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=25.71;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1113,123,0
chrII	289364	.	A	C	997	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.16;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1030,114,0
chrII	289409	.	C	T	1147	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.06;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1180,129,0
chrII	289601	.	C	A	1005	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1038,111,0
chrII	289642	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=46;Dels=0.00;FS=2.898;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.242;QD=20.02;ReadPosRankSum=2.343;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:99:954,105,0
chrII	289723	.	G	A	1042	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.71;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1075,117,0
chrII	289906	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.71;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1401,147,0
chrII	289966	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.22;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1366,150,0
chrII	290233	.	A	G	904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.794;QD=18.08;ReadPosRankSum=1.660;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:937,102,0
chrII	290249	.	C	A	879	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.31;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:96:912,96,0
chrII	290619	.	C	T	1442	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.90;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1475,156,0
chrII	290804	.	A	G	1822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=100;Dels=0.00;FS=9.575;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.521;QD=18.22;ReadPosRankSum=2.929;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:3,96:100:99:1855,207,0
chrII	291311	.	T	C	1681	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.41;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1714,186,0
chrII	291653	.	A	G	1604	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1637,180,0
chrII	292193	.	C	T	1841	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=23.60;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1874,195,0
chrII	292257	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=20.30;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1576,174,0
chrII	292269	.	C	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=16.58;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1459,162,0
chrII	292286	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=12.67;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1199,138,0
chrII	292290	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=12.56;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1251,144,0
chrII	292578	.	C	T	2108	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.2906;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=20.87;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2141,234,0
chrII	292600	.	A	G	1899	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=88.4788;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=17.26;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1932,222,0
chrII	292618	.	T	C	1835	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=14.34;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:1868,216,0
chrII	292676	.	C	T	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.01;FS=4.213;HaplotypeScore=15.8033;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-1.676;QD=15.27;ReadPosRankSum=0.168;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:1,123:125:99:1957,207,0
chrII	292748	.	C	G	2333	SnpCluster	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.09;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,127:129:99:2366,258,0
chrII	292752	.	T	C	2348	SnpCluster	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=17.52;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2381,261,0
chrII	292755	.	A	G	2365	SnpCluster	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=17.39;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2398,267,0
chrII	292835	.	C	T	2519	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=16.6319;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.68;SB=-1.395e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2552,276,0
chrII	292860	.	G	A	2008	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.69;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2041,225,0
chrII	292870	.	A	G	1695	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.23;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1728,192,0
chrII	292964	.	G	A	1672	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=19.44;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1705,189,0
chrII	292991	.	T	C	1683	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.28;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1716,186,0
chrII	293020	.	A	C	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=75;Dels=0.00;FS=2.932;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=1.233;QD=19.33;ReadPosRankSum=2.382;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:2,71:75:99:1483,165,0
chrII	293099	.	C	T	1775	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.36;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1808,189,0
chrII	293354	.	A	C	989	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=0.686;QD=18.66;ReadPosRankSum=1.667;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1022,111,0
chrII	293399	.	T	G	889	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=15.33;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:922,99,0
chrII	293405	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.0174;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.615;QD=13.81;ReadPosRankSum=1.676;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,61:64:99:917,102,0
chrII	293501	.	A	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.64;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1282,144,0
chrII	293504	.	G	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.38;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1283,141,0
chrII	293630	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.09;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1511,165,0
chrII	293963	.	G	C	1249	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.48;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1282,141,0
chrII	294160	.	A	T	553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.386;QD=18.43;ReadPosRankSum=1.617;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:63:586,63,0
chrII	294230	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.58;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1320,141,0
chrII	294623	.	G	A	1028	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.69;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1061,120,0
chrII	295145	.	A	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.37;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1711,186,0
chrII	295631	.	G	A	1515	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.34;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1548,162,0
chrII	295709	.	T	C	2198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.607;QD=19.45;ReadPosRankSum=1.670;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:1,110:113:99:2231,249,0
chrII	295710	.	C	G	2341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.089;HaplotypeScore=5.8321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.866;QD=20.72;ReadPosRankSum=1.701;SB=-1.496e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2374,264,0
chrII	295912	.	T	C	1313	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.76;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1346,150,0
chrII	295988	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.76;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1435,156,0
chrII	296073	.	G	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.56;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1588,171,0
chrII	296774	.	A	G	2070	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2103,231,0
chrII	297226	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.72;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1709,183,0
chrII	297266	.	A	G	2257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3037;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.815;QD=22.13;ReadPosRankSum=1.087;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2290,255,0
chrII	297515	.	G	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.34;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1877,198,0
chrII	297617	.	G	A	1579	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.34;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1612,174,0
chrII	298141	.	C	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.49;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1701,180,0
chrII	298438	.	T	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1368,144,0
chrII	298721	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=16.53;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:843,87,0
chrII	298732	.	A	G	824	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.91;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:857,93,0
chrII	298759	.	T	C	954	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.87;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:987,108,0
chrII	298966	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.195;QD=17.34;ReadPosRankSum=1.553;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1056,117,0
chrII	298990	.	G	A	1018	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=16.69;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1051,111,0
chrII	299034	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.08;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1197,132,0
chrII	299174	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=0.266;QD=21.42;ReadPosRankSum=1.688;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1704,192,0
chrII	299196	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=23.34;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1970,216,0
chrII	299389	.	A	G	2070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=103;Dels=0.00;FS=3.226;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.858;QD=20.10;ReadPosRankSum=1.665;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2103,228,0
chrII	299524	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=14.62;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1480,162,0
chrII	299759	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.23;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1901,201,0
chrII	299803	.	C	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.86;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1584,168,0
chrII	299845	.	C	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.38;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1166,126,0
chrII	300111	.	G	A	1425	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=21.59;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1458,162,0
chrII	300648	.	G	A	99.26	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=15;QD=2.92;SB=-5.426e+01	GT:AD:DP:GQ:PL	1/1:2,32:34:15:132,15,0
chrII	300849	.	C	T	939	filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=21;QD=13.41;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:8,62:70:99:972,105,0
chrII	301002	.	T	C	405	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.268;DP=35;Dels=0.00;FS=2.876;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=8;MQRankSum=-0.602;QD=11.57;ReadPosRankSum=2.268;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:2,33:35:48:438,48,0
chrII	301044	.	C	T	524	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.57;MQ0=5;QD=20.15;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:60:557,60,0
chrII	301351	.	A	G	1963	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=98.6410;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.18;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:1996,219,0
chrII	301399	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.6026;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-1.523;QD=15.56;ReadPosRankSum=1.690;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1340,150,0
chrII	301406	.	T	A	1204	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=15.44;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1237,138,0
chrII	301455	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.29;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1571,168,0
chrII	301549	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.71;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1350,144,0
chrII	301569	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.09;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1447,159,0
chrII	301791	.	T	C	1656	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.79;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1689,186,0
chrII	301937	.	T	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.03;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1316,147,0
chrII	302104	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1134,126,0
chrII	302245	.	G	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.14;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1162,126,0
chrII	302260	.	T	A	906	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=17.42;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:939,99,0
chrII	302285	.	T	C	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.426;QD=18.79;ReadPosRankSum=1.675;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1179,129,0
chrII	302360	.	G	A	1511	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.59;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1544,162,0
chrII	302473	.	T	C	1715	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8439;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.27;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1748,192,0
chrII	302822	.	C	T	1599	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.4379;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.24;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1632,171,0
chrII	302839	.	T	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.63;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1152,129,0
chrII	303256	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.27;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1249,132,0
chrII	303262	.	G	A	1274	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.01;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1307,138,0
chrII	303371	.	C	T	2379	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.44;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2412,264,0
chrII	303446	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.09;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1557,171,0
chrII	303528	.	C	G	706	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=20.17;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:739,81,0
chrII	303537	.	T	G	596	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=17.53;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:69:629,69,0
chrII	303540	.	C	T	641	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=17.81;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:674,72,0
chrII	303729	.	C	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1375,153,0
chrII	303904	.	G	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=20.96;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1584,168,0
chrII	303911	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.48;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1493,165,0
chrII	303967	.	G	A	1799	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.02;FS=0.000;HaplotypeScore=13.4290;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.42;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1832,195,0
chrII	304053	.	C	T	1557	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1590,168,0
chrII	304197	.	A	G	1475	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;DP=70;Dels=0.00;FS=3.827;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-1.534;QD=21.07;ReadPosRankSum=1.683;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1508,165,0
chrII	304430	.	G	A	2529	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.78;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2562,288,0
chrII	304562	.	C	T	2336	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2369,255,0
chrII	304737	.	A	T	3802.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.145;QD=21.36;ReadPosRankSum=2.422;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:2,176:178:99:3802,420,0
chrII	304981	.	G	A	1195	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1228,132,0
chrII	305677	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.8651;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.61;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1511,171,0
chrII	306023	.	G	A	1061	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1094,120,0
chrII	306242	.	T	G	1730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.409;QD=22.76;ReadPosRankSum=1.686;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1763,198,0
chrII	306376	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.97;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1251,132,0
chrII	306970	.	C	T	1533	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.72;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1566,171,0
chrII	306980	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.64;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1526,171,0
chrII	307359	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.353;QD=19.06;ReadPosRankSum=1.678;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:1,63:66:99:1291,141,0
chrII	307459	.	G	A	887	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.48;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:920,102,0
chrII	307613	.	C	A	801	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=17.80;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:834,90,0
chrII	307634	.	T	C	648	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=19.64;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:75:681,75,0
chrII	307713	.	C	T	961	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.45;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:994,108,0
chrII	307808	.	C	T	759	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.25;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:792,84,0
chrII	307810	.	A	G	735	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=17.09;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:768,84,0
chrII	307819	.	C	T	884	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=18.81;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:917,99,0
chrII	307858	.	A	G	810	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=15.58;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:96:843,96,0
chrII	307944	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.37;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1420,156,0
chrII	307989	.	T	C	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=54;Dels=0.00;FS=2.642;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=-1.359;QD=17.06;ReadPosRankSum=2.832;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:3,51:54:99:954,105,0
chrII	307994	.	C	A	979	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=17.18;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1012,111,0
chrII	308006	.	G	A	1158	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=15.86;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1191,129,0
chrII	308083	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=3.415;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.462;QD=18.26;ReadPosRankSum=1.655;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1676,186,0
chrII	308205	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.61;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1308,144,0
chrII	308422	.	C	T	1826	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.01;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1859,198,0
chrII	308477	.	T	C	1149	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.16;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1182,132,0
chrII	308634	.	T	A	890	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:923,99,0
chrII	308890	.	A	G	709	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:81:742,81,0
chrII	309603	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.81;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1218,129,0
chrII	310032	.	A	G	834	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=17.02;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:96:867,96,0
chrII	310088	.	C	T	1507	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.23;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1540,165,0
chrII	310381	.	A	C	1127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.8652;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.124;QD=20.12;ReadPosRankSum=1.670;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1160,126,0
chrII	310571	.	G	A	3843.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.72;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3843,429,0
chrII	310655	.	C	T	1652	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.91;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1685,189,0
chrII	310706	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1374,150,0
chrII	310972	.	G	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5503;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.26;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1348,153,0
chrII	311366	.	A	C	1039	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=15.74;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1072,117,0
chrII	311676	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=19.97;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1790,201,0
chrII	312167	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.42;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1606,171,0
chrII	312983	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.17;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1367,150,0
chrII	313202	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.420;QD=21.75;ReadPosRankSum=1.680;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1490,162,0
chrII	313271	.	T	C	752	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.67;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:87:785,87,0
chrII	313283	.	A	G	719	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=14.38;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:84:752,84,0
chrII	313313	.	G	A	475	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=10.33;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:54:508,54,0
chrII	313334	.	A	G	585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1222;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.732;QD=12.45;ReadPosRankSum=1.659;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:69:618,69,0
chrII	313427	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=65;Dels=0.00;FS=2.635;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.083;QD=22.31;ReadPosRankSum=2.374;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1483,162,0
chrII	313448	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.24;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1434,156,0
chrII	313724	.	A	G	824	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.10;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:857,96,0
chrII	313835	.	G	A	2318	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.33;SB=-1.465e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2351,249,0
chrII	313868	.	C	T	2797	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.19;SB=-1.770e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2830,303,0
chrII	313965	.	T	C	1267	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1300,141,0
chrII	314198	.	A	G	2294	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6757;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.85;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2327,255,0
chrII	314258	.	G	A	2145	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.11;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2178,228,0
chrII	314330	.	G	A	1108	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.44;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1141,123,0
chrII	314791	.	G	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.86;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1660,174,0
chrII	314880	.	G	T	3486.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.26;SB=-1.583e+03	GT:AD:DP:GQ:PL	1/1:0,164:164:99:3486,375,0
chrII	315082	.	T	C	2195	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.31;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2228,246,0
chrII	315177	.	G	A	3030	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.6750;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.05;SB=-1.649e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3063,333,0
chrII	315271	.	C	T	4218.01	PASS	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.10;SB=-1.818e+03	GT:AD:DP:GQ:PL	1/1:0,174:175:99:4218,445,0
chrII	315318	.	T	A	4365.01	PASS	AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=6.1815;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.47;SB=-1.992e+03	GT:AD:DP:GQ:PL	1/1:0,186:186:99:4365,474,0
chrII	315344	.	T	A	2799	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.04;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2832,300,0
chrII	315524	.	C	T	2330	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.40;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2363,258,0
chrII	315559	.	A	T	2513	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.6463;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.64;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2546,270,0
chrII	315655	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.86;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1957,216,0
chrII	315988	.	C	T	1582	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.67;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1615,174,0
chrII	316012	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.81;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1560,168,0
chrII	316150	.	C	T	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.163;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.1681;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.681;QD=21.24;ReadPosRankSum=1.163;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1456,156,0
chrII	316739	.	A	T	785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.733;QD=18.69;ReadPosRankSum=1.479;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:90:818,90,0
chrII	316923	.	T	C	1162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=64.41;MQ0=0;MQRankSum=-0.192;QD=25.82;ReadPosRankSum=1.655;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1195,132,0
chrII	317339	.	C	T	1839	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.58;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1872,198,0
chrII	317648	.	A	G	1896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-0.151;QD=20.61;ReadPosRankSum=1.694;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1929,213,0
chrII	317666	.	C	T	1990	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.32;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2023,222,0
chrII	318150	.	A	G	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.663;DP=78;Dels=0.00;FS=6.007;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.068;QD=19.15;ReadPosRankSum=2.852;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:4,72:78:99:1527,168,0
chrII	318192	.	G	C	1818	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.92;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1851,201,0
chrII	318225	.	T	C	2084	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=23.42;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2117,228,0
chrII	318380	.	A	G	2441	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.736;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.599;QD=23.25;ReadPosRankSum=1.699;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:1,103:105:99:2474,279,0
chrII	318682	.	C	T	2736	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.00;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2769,291,0
chrII	318805	.	A	G	1125	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.2656;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.83;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1158,129,0
chrII	318982	.	C	T	1697	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.21;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1730,183,0
chrII	319000	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.92;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1414,150,0
chrII	319018	.	C	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=16.81;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1260,135,0
chrII	319087	.	C	T	1763	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.74;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1796,198,0
chrII	319510	.	C	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.06;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1486,159,0
chrII	319525	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.56;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1165,129,0
chrII	320309	.	C	T	2687	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=22.02;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2720,282,0
chrII	320539	.	A	G	1042	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1075,120,0
chrII	320583	.	G	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=21.34;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1591,168,0
chrII	320631	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;MQRankSum=-1.407;QD=15.65;ReadPosRankSum=1.660;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1535,174,0
chrII	320632	.	C	T	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=0;MQRankSum=-1.083;QD=15.92;ReadPosRankSum=1.696;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1561,174,0
chrII	320644	.	T	G	1680	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=16.00;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1713,186,0
chrII	320647	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.88;MQ0=0;MQRankSum=0.664;QD=16.05;ReadPosRankSum=1.667;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:1750,189,0
chrII	320656	.	A	G	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=2.822;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;MQRankSum=-0.783;QD=16.00;ReadPosRankSum=2.400;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:2,97:100:99:1633,177,0
chrII	320788	.	A	T	1981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.976;DP=108;Dels=0.00;FS=8.150;HaplotypeScore=10.5430;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.320;QD=18.34;ReadPosRankSum=1.124;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:3,105:108:99:2014,219,0
chrII	320851	.	T	C	1623	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.04;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1656,183,0
chrII	320988	.	C	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=20.02;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1274,135,0
chrII	321553	.	G	A	1952	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=21.69;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1985,213,0
chrII	321773	.	C	T	3934.01	PASS	AC=2;AF=1.00;AN=2;DP=173;Dels=0.02;FS=0.000;HaplotypeScore=24.5822;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.74;SB=-1.815e+03	GT:AD:DP:GQ:PL	1/1:0,165:170:99:3934,426,0
chrII	321857	.	G	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=98.2417;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=15.52;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:1911,207,0
chrII	321867	.	C	T	1649	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=96.8966;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=12.88;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:1682,177,0
chrII	321906	.	A	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=15.39;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1834,198,0
chrII	321960	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4672;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.47;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:2051,228,0
chrII	322122	.	T	C	2243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=3.472;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.096;QD=20.39;ReadPosRankSum=1.637;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:1,108:110:99:2276,249,0
chrII	322182	.	A	T	1921	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.66;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1954,219,0
chrII	322347	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.03;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1694,183,0
chrII	322610	.	G	C	1470	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.34;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1503,165,0
chrII	322620	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.00;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1573,168,0
chrII	323106	.	C	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.88;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1740,186,0
chrII	323214	.	C	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1350,147,0
chrII	323819	.	T	G	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.977;QD=19.03;ReadPosRankSum=1.599;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1517,168,0
chrII	324106	.	A	C	2647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=122;Dels=0.00;FS=2.971;HaplotypeScore=14.0868;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.522;QD=21.70;ReadPosRankSum=2.409;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:2,120:122:99:2680,291,0
chrII	324220	.	G	A	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.264;DP=75;Dels=0.00;FS=3.921;HaplotypeScore=5.9182;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.685;QD=19.28;ReadPosRankSum=-0.140;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1479,144,0
chrII	325202	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=78;Dels=0.00;FS=3.056;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.568;QD=21.05;ReadPosRankSum=2.385;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:2,74:78:99:1675,180,0
chrII	325275	.	T	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.55;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1410,153,0
chrII	325634	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.68;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1371,150,0
chrII	325701	.	T	C	1085	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.50;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1118,123,0
chrII	325795	.	G	A	842	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.91;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:875,93,0
chrII	326265	.	C	G	2195	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.86;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2228,243,0
chrII	326384	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=22.17;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1496,159,0
chrII	326660	.	C	T	2723	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.08;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2756,288,0
chrII	326680	.	C	T	2084	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=17.66;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2117,234,0
chrII	326704	.	G	A	1772	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;QD=14.89;SB=-1.476e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:1805,192,0
chrII	326734	.	T	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3617;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=10.64;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:1267,138,0
chrII	326744	.	G	A	1204	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=10.29;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1237,132,0
chrII	326754	.	A	G	1207	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=9.114;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=-2.346;QD=10.14;ReadPosRankSum=2.408;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:2,117:119:99:1240,138,0
chrII	326757	.	A	T	1115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;MQRankSum=-1.617;QD=9.29;ReadPosRankSum=1.559;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,119:120:99:1148,129,0
chrII	326765	.	G	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;QD=11.79;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:1459,156,0
chrII	326899	.	G	A	2220	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.42;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2253,237,0
chrII	327179	.	A	G	2832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.757;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.0455;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.399;QD=20.98;ReadPosRankSum=0.475;SB=-1.527e+03	GT:AD:DP:GQ:PL	1/1:1,134:135:99:2865,309,0
chrII	327403	.	C	T	2716	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.62;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2749,297,0
chrII	327511	.	A	T	2411	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.1916;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.96;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2444,267,0
chrII	327596	.	A	G	2499	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.74;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2532,276,0
chrII	327647	.	T	C	2576	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.7373;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.30;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2609,285,0
chrII	327685	.	C	A	2678	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.80;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2711,291,0
chrII	327736	.	A	G	2397	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.05;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2430,270,0
chrII	327972	.	T	C	2086	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.18;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2119,228,0
chrII	327989	.	T	C	1858	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.36;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1891,210,0
chrII	328068	.	C	T	3679.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-1.801e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:3679,393,0
chrII	328179	.	A	G	2013	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.62;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2046,228,0
chrII	328278	.	A	C	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.8389;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.268;QD=19.81;ReadPosRankSum=1.661;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:1974,213,0
chrII	328525	.	A	G	1588	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.36;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1621,177,0
chrII	328531	.	G	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=21.22;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1646,174,0
chrII	328557	.	A	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.82;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1426,159,0
chrII	328805	.	C	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.20;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2005,213,0
chrII	328908	.	A	G	1557	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.11;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1590,177,0
chrII	329185	.	G	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1364,150,0
chrII	329583	.	C	A	1078	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1111,123,0
chrII	329654	.	C	T	611	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:72:644,72,0
chrII	329710	.	G	A	613	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:72:646,72,0
chrII	329880	.	C	G	1167	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.61;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1200,132,0
chrII	330203	.	T	A	2152	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.1917;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2185,231,0
chrII	331193	.	A	T	1148	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=61;Dels=0.00;FS=3.237;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.029;QD=18.82;ReadPosRankSum=1.674;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1181,126,0
chrII	331253	.	C	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1402,147,0
chrII	331783	.	G	A	2997	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.39;SB=-1.707e+03	GT:AD:DP:GQ:PL	1/1:0,146:147:99:3030,324,0
chrII	331804	.	A	G	2587	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.70;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2620,285,0
chrII	331829	.	A	G	2011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=105;Dels=0.00;FS=16.305;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.578;QD=19.15;ReadPosRankSum=3.340;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:4,101:105:99:2044,228,0
chrII	332117	.	C	T	3072	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.19;SB=-1.481e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3105,330,0
chrII	332399	.	A	G	4597.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=188;Dels=0.00;FS=4.108;HaplotypeScore=8.1704;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.147;QD=24.45;ReadPosRankSum=1.677;SB=-1.945e+03	GT:AD:DP:GQ:PL	1/1:1,187:188:99:4597,504,0
chrII	332471	.	G	A	3445.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=6.5356;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.76;SB=-1.517e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:3445,361,0
chrII	332548	.	A	G	1240	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.00;FS=6.998;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.573;QD=17.22;ReadPosRankSum=2.311;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1273,141,0
chrII	332558	.	C	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.03;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1349,144,0
chrII	332630	.	G	A	1810	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.46;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1843,198,0
chrII	332654	.	T	C	2129	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.01;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2162,237,0
chrII	332940	.	C	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.66;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1603,174,0
chrII	332992	.	C	G	1176	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.93;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1209,132,0
chrII	333015	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=1.354;QD=20.62;ReadPosRankSum=1.669;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1167,126,0
chrII	333147	.	G	A	2267	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.01;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2300,252,0
chrII	333270	.	A	T	1240	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=3.701;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.274;QD=18.24;ReadPosRankSum=1.681;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1273,135,0
chrII	333382	.	T	A	2365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=2.171;QD=24.38;ReadPosRankSum=2.399;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2398,255,0
chrII	335049	.	T	A	2202	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1788;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.24;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2235,240,0
chrII	335238	.	T	C	2116	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.16;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2149,237,0
chrII	335310	.	A	G	1828	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.8724;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,87:90:99:1861,204,0
chrII	336101	.	T	C	1368	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.628;DP=79;Dels=0.00;FS=8.238;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.271;QD=17.32;ReadPosRankSum=3.711;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:5,72:79:99:1401,156,0
chrII	336720	.	G	A	1725	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.83;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1758,186,0
chrII	336747	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.84;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1478,165,0
chrII	337067	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.9321;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=16.53;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1008,105,0
chrII	337074	.	G	A	925	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5234;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=1.673;QD=15.68;ReadPosRankSum=1.314;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:958,105,0
chrII	337526	.	T	C	775	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=14.90;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:87:808,87,0
chrII	337571	.	G	C	546	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=12.70;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:66:579,66,0
chrII	337573	.	A	C	486	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=41;Dels=0.00;FS=4.087;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=0.634;QD=11.85;ReadPosRankSum=-1.310;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:57:519,57,0
chrII	337574	.	T	C	553	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.928;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=-1.733;QD=13.17;ReadPosRankSum=1.650;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:63:586,63,0
chrII	337577	.	A	T	562	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=10.60;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:63:595,63,0
chrII	337583	.	G	A	527	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=10.13;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:60:560,60,0
chrII	337585	.	C	G	544	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=10.26;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:63:577,63,0
chrII	337587	.	T	C	546	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=10.30;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:63:579,63,0
chrII	337611	.	T	C	692	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;QD=10.81;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:78:725,78,0
chrII	337618	.	C	T	749	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=11.01;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:87:782,87,0
chrII	337731	.	T	G	1086	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1119,126,0
chrII	337897	.	G	A	2778	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=23.95;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2811,309,0
chrII	338664	.	A	T	2318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.351;QD=17.17;ReadPosRankSum=2.375;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:2,133:135:99:2351,255,0
chrII	340757	.	G	A	2009	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.83;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2042,216,0
chrII	340842	.	A	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.97;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1255,138,0
chrII	340843	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=17.53;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1295,141,0
chrII	341186	.	T	C	2392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.091;QD=20.80;ReadPosRankSum=1.702;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,113:115:99:2425,270,0
chrII	341233	.	A	G	1813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=89;Dels=0.00;FS=3.485;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.254;QD=20.37;ReadPosRankSum=1.692;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1846,207,0
chrII	341391	.	T	A	2055	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.86;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2088,231,0
chrII	341451	.	A	G	3581.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.3737;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.52;SB=-1.861e+03	GT:AD:DP:GQ:PL	1/1:0,157:159:99:3581,390,0
chrII	342023	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=17.30;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1365,150,0
chrII	342025	.	G	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=17.47;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1431,156,0
chrII	342041	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=3.050;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;MQRankSum=0.862;QD=16.55;ReadPosRankSum=2.112;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1241,138,0
chrII	342079	.	T	C	937	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=15.88;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:970,108,0
chrII	342108	.	C	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.42;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1101,117,0
chrII	342383	.	G	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.34;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1228,132,0
chrII	342723	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.22;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1217,129,0
chrII	343086	.	A	T	1017	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.42;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1050,111,0
chrII	350491	.	G	A	3520.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.28;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:0,158:158:99:3520,375,0
chrII	353632	.	A	G	196.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=56.09;MQ0=1;MQRankSum=1.875;QD=14.02;ReadPosRankSum=-0.099;SB=-1.503e-01	GT:AD:DP:GQ:PL	0/1:3,11:14:10:226,0,10
chrII	353634	.	A	G	280	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=1;QD=20.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,14:14:39:313,39,0
chrII	355349	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.93;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1504,162,0
chrII	355626	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.95;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1341,144,0
chrII	355836	.	A	G	2376	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.29;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2409,261,0
chrII	357199	.	A	G	1779	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.61;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1812,201,0
chrII	358948	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.18;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1679,180,0
chrII	359006	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.42;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1468,156,0
chrII	359116	.	G	A	1725	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1758,186,0
chrII	359471	.	A	G	1497	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.08;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1530,168,0
chrII	359576	.	C	T	1965	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.87;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1998,213,0
chrII	359654	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.21;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1203,126,0
chrII	359662	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.01;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1173,129,0
chrII	359957	.	C	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.04;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1861,201,0
chrII	359978	.	C	T	1889	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.68;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1922,207,0
chrII	360477	.	A	C	863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.433;QD=19.61;ReadPosRankSum=2.336;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:2,41:44:99:896,99,0
chrII	360862	.	T	C	2286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.466;QD=21.57;ReadPosRankSum=1.599;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,103:106:99:2319,255,0
chrII	361468	.	T	C	982	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.04;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1015,114,0
chrII	361648	.	G	T	1031	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7387;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.18;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1064,114,0
chrII	361669	.	G	A	743	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=14.86;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:84:776,84,0
chrII	361834	.	G	A	580	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.71;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:66:613,66,0
chrII	362082	.	C	T	1061	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.02;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1094,117,0
chrII	362354	.	C	T	2357	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=23.34;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2390,249,0
chrII	362377	.	C	T	2282	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.94;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2315,249,0
chrII	362638	.	C	T	4834.01	PASS	AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=11.1630;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.59;SB=-2.452e+03	GT:AD:DP:GQ:PL	1/1:0,214:214:99:4834,525,0
chrII	362688	.	T	G	2227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=100;Dels=0.00;FS=2.594;HaplotypeScore=9.8300;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=2.425;QD=22.27;ReadPosRankSum=2.930;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:3,97:100:99:2260,252,0
chrII	362702	.	C	T	1465	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.93;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1498,159,0
chrII	362748	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=19.32;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1134,123,0
chrII	362789	.	T	G	1839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=11.103;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=1.376;QD=16.72;ReadPosRankSum=2.405;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:2,108:110:99:1872,210,0
chrII	362800	.	G	C	2159	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.41;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2192,240,0
chrII	362833	.	C	T	3022	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=19.25;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:0,156:157:99:3055,324,0
chrII	362997	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.921;QD=20.47;ReadPosRankSum=2.325;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:2,77:81:99:1691,183,0
chrII	363144	.	T	C	1827	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=17.91;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1860,207,0
chrII	363190	.	G	A	1712	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=20.88;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1745,195,0
chrII	363224	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=21.47;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1536,165,0
chrII	363228	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.57;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1452,165,0
chrII	363277	.	C	G	892	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.24;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:925,102,0
chrII	363362	.	A	G	919	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=19.15;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:952,105,0
chrII	363386	.	G	A	754	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=17.14;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:787,84,0
chrII	363408	.	A	G	575	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.02;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:69:608,69,0
chrII	363414	.	A	G	563	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=13.40;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:66:596,66,0
chrII	363574	.	C	T	776	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=18.48;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:809,90,0
chrII	363588	.	T	C	661	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=16.95;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,37:39:78:694,78,0
chrII	363616	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.400;QD=20.67;ReadPosRankSum=1.666;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1108,123,0
chrII	363700	.	T	G	1325	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.529;QD=18.40;ReadPosRankSum=1.636;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1358,147,0
chrII	363721	.	C	T	1157	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=16.53;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1190,126,0
chrII	363749	.	A	C	807	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=65.0339;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=10.62;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:93:840,93,0
chrII	363765	.	T	A	909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=65.3476;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-0.501;QD=11.81;ReadPosRankSum=1.687;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:942,102,0
chrII	363888	.	C	G	615	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=9.92;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:69:648,69,0
chrII	363954	.	T	A	1895	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.95;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1928,207,0
chrII	364073	.	C	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=20.25;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1572,168,0
chrII	364161	.	T	C	1358	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=0.661;QD=24.69;ReadPosRankSum=1.669;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1391,153,0
chrII	364199	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;DP=70;Dels=0.00;FS=3.041;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-1.498;QD=21.51;ReadPosRankSum=0.264;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1539,149,0
chrII	364373	.	C	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.37;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1195,132,0
chrII	364408	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;DP=58;Dels=0.00;FS=6.154;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.019;QD=17.93;ReadPosRankSum=2.872;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:3,52:58:99:1073,117,0
chrII	364419	.	C	T	1060	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=18.60;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1093,120,0
chrII	364642	.	A	G	2610	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.30;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2643,294,0
chrII	364895	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.0989;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.31;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1617,174,0
chrII	365120	.	A	C	2004	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=20.45;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2037,228,0
chrII	365126	.	C	T	2031	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.53;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2064,228,0
chrII	365200	.	G	A	1564	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.70;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1597,168,0
chrII	365306	.	G	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3133;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.17;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1748,183,0
chrII	365326	.	A	G	1619	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.51;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1652,180,0
chrII	365525	.	C	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.98;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1851,204,0
chrII	365830	.	G	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.48;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1558,165,0
chrII	365863	.	C	T	1807	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.17;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1840,195,0
chrII	366047	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.61;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1638,174,0
chrII	366120	.	C	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.47;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1746,186,0
chrII	366264	.	C	T	2576	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.83;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2609,282,0
chrII	366323	.	T	A	3402.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.63;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3402,360,0
chrII	366723	.	A	C	1061	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2166;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.39;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1094,120,0
chrII	366754	.	C	T	964	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.85;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:997,105,0
chrII	366921	.	C	T	2327	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4125;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.72;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2360,258,0
chrII	366946	.	G	C	2321	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.91;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2354,264,0
chrII	367200	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.29;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1504,165,0
chrII	367429	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.54;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1409,153,0
chrII	367502	.	T	C	1350	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.85;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1383,150,0
chrII	367503	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.233;QD=19.63;ReadPosRankSum=1.681;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1368,150,0
chrII	367531	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.21;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1326,141,0
chrII	367587	.	A	G	931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=59;Dels=0.00;FS=3.168;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=0.866;QD=15.78;ReadPosRankSum=1.670;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,55:59:99:964,108,0
chrII	367601	.	C	T	1136	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.32;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1169,123,0
chrII	367774	.	A	T	2291	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.68;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2324,252,0
chrII	367802	.	A	G	2260	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.06;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2293,252,0
chrII	367884	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.86;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1694,186,0
chrII	368051	.	G	A	2360	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=24.33;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2393,252,0
chrII	368084	.	G	T	2325	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9182;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.39;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2358,249,0
chrII	368093	.	C	T	2371	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.37;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2404,252,0
chrII	368247	.	T	C	2428	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=24.04;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2461,279,0
chrII	368496	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=18.71;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1212,129,0
chrII	368527	.	G	A	971	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=15.66;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1004,114,0
chrII	368536	.	T	C	954	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=3.704;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=-1.164;QD=15.14;ReadPosRankSum=1.675;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,60:63:99:987,111,0
chrII	368563	.	A	G	874	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=13.04;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:907,99,0
chrII	368565	.	G	A	818	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=12.03;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:93:851,93,0
chrII	368583	.	T	C	1049	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=78;Dels=0.00;FS=14.663;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.364;QD=13.45;ReadPosRankSum=2.754;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1082,117,0
chrII	368630	.	T	G	1274	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=15.73;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1307,144,0
chrII	368847	.	T	C	874	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=45;Dels=0.00;FS=6.734;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.578;QD=19.42;ReadPosRankSum=2.341;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:907,99,0
chrII	369040	.	C	T	1738	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.28;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1771,189,0
chrII	369085	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;DP=63;Dels=0.00;FS=6.682;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.096;QD=20.67;ReadPosRankSum=2.371;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:2,60:63:99:1335,147,0
chrII	369600	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1382;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.92;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1520,168,0
chrII	369657	.	G	A	2409	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2442,258,0
chrII	369692	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.48;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1806,198,0
chrII	369831	.	G	C	524	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=12.78;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,38:41:63:557,63,0
chrII	369847	.	A	C	645	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=14.66;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,40:43:75:678,75,0
chrII	369941	.	G	T	1671	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.63;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1704,192,0
chrII	370007	.	T	G	1574	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.338;QD=19.67;ReadPosRankSum=1.644;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1607,177,0
chrII	370707	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.92;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1017,111,0
chrII	370780	.	T	G	812	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=15.04;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:93:845,93,0
chrII	370967	.	C	T	502	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.19;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:535,57,0
chrII	371029	.	A	G	566	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.69;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:66:599,66,0
chrII	371139	.	T	G	871	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.36;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:904,99,0
chrII	371555	.	C	T	1114	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.28;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1147,123,0
chrII	371601	.	C	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=0.45;SB=-4.168e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:6:53,6,0
chrII	371707	.	C	G	902	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.35;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:935,105,0
chrII	371746	.	A	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.79;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1218,135,0
chrII	371941	.	C	T	1974	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.93;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2007,216,0
chrII	372481	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.200;QD=19.19;ReadPosRankSum=1.699;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2029,222,0
chrII	372547	.	A	G	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=87;Dels=0.00;FS=3.040;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.960;QD=20.95;ReadPosRankSum=2.393;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1856,201,0
chrII	372730	.	G	A	1819	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1447;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.44;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1852,201,0
chrII	372845	.	G	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.88;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1674,180,0
chrII	372954	.	C	T	711	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=13.67;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:744,81,0
chrII	372958	.	T	C	867	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=16.36;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:900,102,0
chrII	373487	.	C	G	719	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=9.59;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:84:752,84,0
chrII	373488	.	A	C	751	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=9.75;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:87:784,87,0
chrII	373603	.	T	C	1395	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.14;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1428,156,0
chrII	373731	.	G	A	1682	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.69;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1715,180,0
chrII	373782	.	A	G	1299	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.62;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1332,147,0
chrII	374149	.	G	C	1393	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.43;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1426,159,0
chrII	374231	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1883,198,0
chrII	375303	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.25;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1511,165,0
chrII	375370	.	T	A	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.108;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.463;QD=20.12;ReadPosRankSum=1.694;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1864,201,0
chrII	375505	.	C	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.1812;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.55;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1903,207,0
chrII	375753	.	G	C	2097	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.07;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2130,231,0
chrII	375801	.	T	C	1806	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.76;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1839,201,0
chrII	375942	.	T	C	1505	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.46;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1538,171,0
chrII	375972	.	G	A	1838	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.13;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1871,201,0
chrII	376093	.	C	T	1391	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.46;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:68:99:1424,150,0
chrII	376186	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1262,135,0
chrII	376375	.	G	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.05;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1276,138,0
chrII	376703	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1421,147,0
chrII	376898	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.05;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1731,183,0
chrII	376916	.	G	T	1415	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.62;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1448,156,0
chrII	377588	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.448;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.878;QD=19.54;ReadPosRankSum=1.637;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1479,165,0
chrII	377622	.	T	C	1593	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1626,183,0
chrII	377657	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.21;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1589,177,0
chrII	377735	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.5239;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=15.58;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1295,135,0
chrII	377765	.	T	G	1013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=82;Dels=0.00;FS=2.898;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;MQRankSum=-1.187;QD=12.35;ReadPosRankSum=2.390;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1046,114,0
chrII	377771	.	A	G	996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=82;Dels=0.00;FS=4.117;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;MQRankSum=-1.689;QD=12.15;ReadPosRankSum=1.689;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,79:82:99:1029,114,0
chrII	377776	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;MQRankSum=1.599;QD=13.29;ReadPosRankSum=1.688;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1070,117,0
chrII	377807	.	G	T	710	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=9.34;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:84:743,84,0
chrII	377820	.	A	G	857	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=11.43;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:890,99,0
chrII	377867	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.436;QD=18.28;ReadPosRankSum=-0.718;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1532,142,0
chrII	378164	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=13.5472;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=16.24;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1478,162,0
chrII	378868	.	C	G	1222	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.06;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1255,135,0
chrII	379311	.	T	C	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=3.104;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.995;QD=21.67;ReadPosRankSum=1.659;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:1073,117,0
chrII	379421	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.67;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1290,141,0
chrII	379464	.	A	G	1009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=3.900;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.128;QD=18.69;ReadPosRankSum=1.604;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1042,114,0
chrII	379470	.	G	A	976	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.52;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1009,108,0
chrII	379598	.	T	C	1257	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1290,141,0
chrII	379860	.	C	T	1060	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.67;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1093,120,0
chrII	380502	.	T	C	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;MQRankSum=0.756;QD=24.45;ReadPosRankSum=1.635;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1769,195,0
chrII	380878	.	C	T	1248	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=72.3208;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=16.00;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1281,135,0
chrII	380882	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=15.54;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1245,138,0
chrII	380911	.	T	C	744	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=10.48;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:87:777,87,0
chrII	380932	.	C	T	926	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=13.42;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:959,102,0
chrII	380971	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.42;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1392,147,0
chrII	381271	.	A	G	1963	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.83;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1996,216,0
chrII	381385	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=60.2329;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.572;QD=20.26;ReadPosRankSum=-0.080;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1350,150,0
chrII	381431	.	A	T	1071	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.47;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1104,117,0
chrII	381440	.	T	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.20;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1065,114,0
chrII	381522	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=40.17;MQ0=0;QD=14.72;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1137,126,0
chrII	381743	.	A	G	2601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=115;Dels=0.00;FS=8.816;HaplotypeScore=8.9117;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.160;QD=22.62;ReadPosRankSum=2.386;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:2,113:115:99:2634,294,0
chrII	381805	.	C	T	1888	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.52;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1921,207,0
chrII	382105	.	G	A	1691	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.87;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1724,183,0
chrII	382200	.	C	G	2450	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.87;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2483,270,0
chrII	382252	.	G	A	2195	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.73;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2228,240,0
chrII	382471	.	G	T	2869	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.77;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,123:126:99:2902,306,0
chrII	382571	.	A	G	1832	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=23.49;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1865,201,0
chrII	382644	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.88;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1955,210,0
chrII	382823	.	A	G	2026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.867;HaplotypeScore=10.6510;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.963;QD=19.86;ReadPosRankSum=2.401;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:2,99:102:99:2059,225,0
chrII	382880	.	C	T	1752	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=21.90;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1785,189,0
chrII	382897	.	A	C	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;MQRankSum=-0.991;QD=19.77;ReadPosRankSum=2.375;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1338,144,0
chrII	382911	.	C	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.23;MQ0=0;QD=18.65;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1264,141,0
chrII	382936	.	C	A	1158	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=16.31;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1191,129,0
chrII	383074	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.0975;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.75;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1356,147,0
chrII	383116	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7753;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=21.67;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1485,159,0
chrII	383124	.	A	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.07;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1466,159,0
chrII	383249	.	G	A	473	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=16.89;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:54:506,54,0
chrII	383276	.	G	A	702	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.55;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:735,78,0
chrII	383344	.	T	C	1411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.357;QD=20.75;ReadPosRankSum=-0.102;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1444,135,0
chrII	383378	.	T	C	1441	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=19.74;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1474,159,0
chrII	383390	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=18.35;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1336,144,0
chrII	383409	.	T	A	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1827;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.990;QD=17.51;ReadPosRankSum=0.495;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1259,132,0
chrII	383512	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1746;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.05;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1665,177,0
chrII	383723	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.64;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1375,150,0
chrII	383768	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0976;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.18;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1748,186,0
chrII	386105	.	C	T	2201	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.4183;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.67;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2234,234,0
chrII	386301	.	G	A	2526	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.97;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2559,291,0
chrII	386954	.	A	T	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.522;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.529;QD=18.79;ReadPosRankSum=1.636;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1386,153,0
chrII	386957	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.59;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1392,150,0
chrII	387231	.	C	A	1723	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.97;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1756,186,0
chrII	387602	.	A	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1254,135,0
chrII	387923	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.40;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1197,132,0
chrII	388950	.	C	A	882	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.29;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:915,102,0
chrII	388997	.	G	A	772	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.43;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:805,87,0
chrII	389417	.	C	A	871	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.54;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:904,96,0
chrII	390461	.	A	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4471;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1716,189,0
chrII	390676	.	C	T	1021	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.69;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1054,114,0
chrII	392022	.	T	A	2538	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.3089;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.94;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2571,273,0
chrII	392090	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.57;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1432,153,0
chrII	394726	.	G	C	1260	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=14.48;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1293,141,0
chrII	396556	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=1.019;QD=20.22;ReadPosRankSum=1.681;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1408,156,0
chrII	396793	.	T	C	1726	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.57;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1759,195,0
chrII	396967	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.808;QD=17.97;ReadPosRankSum=1.559;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1111,120,0
chrII	396972	.	C	T	900	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=15.79;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:933,105,0
chrII	397114	.	G	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.66;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1586,171,0
chrII	397162	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.28;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1493,162,0
chrII	397216	.	T	G	1432	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.62;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1465,159,0
chrII	397435	.	A	G	1419	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1452,159,0
chrII	397645	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=3.704;HaplotypeScore=8.7908;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.256;QD=19.37;ReadPosRankSum=1.675;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1234,138,0
chrII	397813	.	T	C	1059	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.18;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1092,120,0
chrII	397849	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.95;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1295,144,0
chrII	397984	.	A	G	1139	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.31;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1172,126,0
chrII	398292	.	G	A	916	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.08;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:949,102,0
chrII	398314	.	G	A	1042	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.43;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1075,114,0
chrII	399178	.	T	G	951	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.12;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:984,108,0
chrII	399535	.	C	T	952	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.64;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:985,105,0
chrII	399543	.	A	G	907	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.30;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:940,102,0
chrII	399796	.	G	A	2102	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.36;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2135,231,0
chrII	399864	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.20;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1289,138,0
chrII	399991	.	G	A	1219	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1252,141,0
chrII	400386	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.664;QD=22.63;ReadPosRankSum=0.442;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1187,106,0
chrII	400486	.	A	G	1412	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6878;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.72;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1445,156,0
chrII	400827	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.433;QD=20.56;ReadPosRankSum=1.636;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1513,168,0
chrII	400907	.	C	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.51;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1668,177,0
chrII	401143	.	A	G	1885	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.748;QD=19.84;ReadPosRankSum=1.696;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1918,216,0
chrII	406111	.	G	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.48;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1585,174,0
chrII	406115	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.89;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1621,180,0
chrII	409364	.	A	G	741	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.226;QD=16.11;ReadPosRankSum=1.657;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:87:774,87,0
chrII	415782	.	C	T	122.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078;DP=99;Dels=0.02;FS=108.569;HaplotypeScore=11.6691;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=-1.782;QD=1.23;ReadPosRankSum=-1.504;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,33:97:99:152,0,263
chrII	415869	.	A	C	1322	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1355,150,0
chrII	417988	.	G	A	1774	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.71;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1807,189,0
chrII	419086	.	G	A	1775	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.05;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1808,192,0
chrII	419139	.	C	T	1865	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.69;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1898,201,0
chrII	419197	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.44;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1791,198,0
chrII	419495	.	G	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.19;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1726,183,0
chrII	420720	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=14.1661;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.49;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1937,216,0
chrII	420885	.	A	G	1118	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=15.9333;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.69;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1151,129,0
chrII	421030	.	G	C	993	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.13;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1026,114,0
chrII	421116	.	C	A	1247	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.61;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1280,135,0
chrII	421179	.	G	A	1060	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.93;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1093,117,0
chrII	421574	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1456,156,0
chrII	421692	.	A	G	1701	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.1386;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.96;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1734,192,0
chrII	422148	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.40;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1685,183,0
chrII	422164	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.17;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1642,180,0
chrII	422193	.	T	A	1574	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.412;QD=18.52;ReadPosRankSum=1.650;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1607,180,0
chrII	422274	.	A	G	2088	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.67;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2121,225,0
chrII	422283	.	G	A	1927	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.71;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1960,216,0
chrII	422787	.	G	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.28;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1276,138,0
chrII	423264	.	A	G	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.070;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.6622;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.171;QD=17.12;ReadPosRankSum=2.336;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1146,126,0
chrII	423351	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.7557;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.62;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1374,153,0
chrII	423388	.	A	G	49.22	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=49.1322;MLEAC=1;MLEAF=0.500;MQ=57.01;MQ0=0;MQRankSum=0.643;QD=0.78;ReadPosRankSum=-3.523;SB=-3.122e+01	GT:AD:DP:GQ:PL	0/1:46,17:63:10:79,0,10
chrII	423518	.	A	G	907	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.938;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-1.399;QD=17.44;ReadPosRankSum=1.666;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:940,105,0
chrII	423520	.	G	A	940	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.08;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:973,108,0
chrII	423550	.	G	A	894	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=15.41;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:927,99,0
chrII	423561	.	G	A	787	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=14.85;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:87:820,87,0
chrII	423698	.	G	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.77;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1753,186,0
chrII	424490	.	G	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.78;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1882,207,0
chrII	424607	.	A	G	2231	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9957;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2264,246,0
chrII	424643	.	T	C	1968	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.39;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2001,225,0
chrII	424811	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.89;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1495,165,0
chrII	425449	.	G	A	1872	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.29;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1905,213,0
chrII	425500	.	T	C	1550	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.39;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1583,177,0
chrII	425596	.	G	A	1294	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.57;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1327,141,0
chrII	425780	.	T	C	2570	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.54;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2603,285,0
chrII	425844	.	T	A	2077	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.08;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2110,225,0
chrII	425891	.	T	A	928	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.62;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:961,102,0
chrII	425982	.	A	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.15;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1140,123,0
chrII	426165	.	A	G	2262	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.06;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2295,246,0
chrII	426299	.	C	T	1314	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.61;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1347,144,0
chrII	426454	.	T	C	1437	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.96;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1470,159,0
chrII	426608	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=46;Dels=0.00;FS=4.491;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.423;QD=19.13;ReadPosRankSum=1.501;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:99:913,102,0
chrII	426669	.	C	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.43;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1379,147,0
chrII	427098	.	C	T	2833	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.9791;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.81;SB=-1.507e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2866,306,0
chrII	427812	.	A	G	803	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.31;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:93:836,93,0
chrII	427869	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=24.55;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1408,147,0
chrII	427998	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.82;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1539,165,0
chrII	428040	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-0.730;QD=13.44;ReadPosRankSum=1.398;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1162,126,0
chrII	428055	.	A	T	1087	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-1.479;QD=13.26;ReadPosRankSum=1.690;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1120,117,0
chrII	428058	.	A	G	875	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;MQRankSum=-1.684;QD=11.99;ReadPosRankSum=1.684;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:908,102,0
chrII	428059	.	G	A	913	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=12.51;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:946,102,0
chrII	428060	.	C	T	934	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=12.79;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:967,102,0
chrII	428064	.	G	T	1014	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=12.67;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1047,111,0
chrII	428982	.	G	A	1886	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.50;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1919,201,0
chrII	429006	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.13;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1468,165,0
chrII	429131	.	G	A	2326	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.40;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2359,255,0
chrII	429360	.	G	A	702	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.65;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,32:34:81:735,81,0
chrII	429397	.	T	C	837	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.46;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:870,96,0
chrII	429746	.	A	G	1320	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=1;QD=19.70;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1353,150,0
chrII	429788	.	A	G	1439	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.1561;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.346;QD=18.69;ReadPosRankSum=1.640;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:1,74:77:99:1472,162,0
chrII	430040	.	G	A	2114	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.52;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2147,240,0
chrII	430055	.	C	T	1855	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.12;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1888,201,0
chrII	430067	.	A	G	1562	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=16.80;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1595,174,0
chrII	430253	.	G	A	2043	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.76;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2076,222,0
chrII	430372	.	T	A	2035	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.56;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2068,222,0
chrII	430439	.	A	G	2380	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=3.569;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.687;QD=20.34;ReadPosRankSum=1.702;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2413,264,0
chrII	430964	.	A	G	1918	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0032;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.30;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1951,213,0
chrII	431229	.	A	G	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.230;QD=18.86;ReadPosRankSum=1.607;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1617,180,0
chrII	431273	.	T	C	2044	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=5.0065;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.74;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2077,225,0
chrII	431655	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=23.24;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1660,183,0
chrII	431703	.	C	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.61;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1476,156,0
chrII	431754	.	T	C	1565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.293;QD=22.04;ReadPosRankSum=1.683;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1598,174,0
chrII	431781	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.094;QD=20.65;ReadPosRankSum=1.669;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1169,126,0
chrII	431797	.	G	A	1084	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.68;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1117,117,0
chrII	431999	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.25;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1008,111,0
chrII	432022	.	A	T	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=80;Dels=0.03;FS=6.051;HaplotypeScore=10.1416;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=-1.741;QD=14.05;ReadPosRankSum=2.832;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1157,123,0
chrII	432025	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=15.01;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1144,126,0
chrII	432278	.	A	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.62;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1535,165,0
chrII	432356	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.61;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1709,192,0
chrII	432497	.	C	T	1333	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.20;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1366,147,0
chrII	432659	.	T	C	2580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=119;Dels=0.00;FS=8.081;HaplotypeScore=12.6696;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.283;QD=21.68;ReadPosRankSum=3.754;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:5,113:119:99:2613,285,0
chrII	432767	.	C	T	1549	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.65;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1582,171,0
chrII	432821	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.48;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1405,150,0
chrII	432848	.	T	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.07;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1406,159,0
chrII	432851	.	G	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.13;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1487,159,0
chrII	432974	.	G	T	2043	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.06;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2076,228,0
chrII	433196	.	C	T	1398	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.18;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1431,153,0
chrII	433232	.	C	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.15;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1894,201,0
chrII	433856	.	G	A	917	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=18.71;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:950,105,0
chrII	433955	.	A	G	2142	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.018;QD=22.31;ReadPosRankSum=1.696;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2175,237,0
chrII	434194	.	A	C	981	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.81;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1014,111,0
chrII	434313	.	A	C	1175	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;QD=13.99;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1208,147,0
chrII	434484	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.625;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.556;QD=20.62;ReadPosRankSum=1.667;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1126,123,0
chrII	434637	.	C	T	2843	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.74;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2876,309,0
chrII	435574	.	T	A	2282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=4.771;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.306;QD=22.37;ReadPosRankSum=1.630;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2315,246,0
chrII	436656	.	T	C	1559	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.93;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1592,174,0
chrII	436888	.	G	A	3115	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.62;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3148,333,0
chrII	437754	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.51;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1856,204,0
chrII	438190	.	A	G	2405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.724;HaplotypeScore=7.4167;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.032;QD=24.29;ReadPosRankSum=1.697;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2438,264,0
chrII	438423	.	A	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.49;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1810,195,0
chrII	438492	.	G	A	2243	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.77;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2276,249,0
chrII	438656	.	G	A	2397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.054;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.943;QD=23.50;ReadPosRankSum=-1.561;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2430,252,0
chrII	438954	.	T	G	1899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.632;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.232;QD=21.10;ReadPosRankSum=1.655;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1932,213,0
chrII	440193	.	T	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.54;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1433,156,0
chrII	440220	.	A	T	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.221;QD=19.02;ReadPosRankSum=1.619;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1193,129,0
chrII	440349	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.46;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1138,120,0
chrII	441419	.	A	C	2369	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.46;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2402,261,0
chrII	441520	.	C	T	2268	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.65;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2301,240,0
chrII	441722	.	G	A	1955	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.02;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1988,219,0
chrII	441772	.	T	C	2152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.501;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.194;QD=20.50;ReadPosRankSum=1.698;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:1,102:105:99:2185,240,0
chrII	441927	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1579,177,0
chrII	441973	.	A	G	1337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.595;QD=20.89;ReadPosRankSum=1.624;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1370,147,0
chrII	442031	.	G	C	923	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=14.65;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:956,108,0
chrII	442040	.	A	G	985	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-1.359;QD=15.15;ReadPosRankSum=1.626;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1018,114,0
chrII	442059	.	G	C	818	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.19;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:93:851,93,0
chrII	442063	.	T	C	818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=-1.407;QD=12.78;ReadPosRankSum=1.678;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:93:851,93,0
chrII	442233	.	C	A	1971	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.40;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2004,213,0
chrII	442249	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.6046;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.02;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,93:96:99:2051,222,0
chrII	442309	.	A	G	1932	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.955;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.139;QD=22.21;ReadPosRankSum=1.613;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1965,216,0
chrII	442819	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.75;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1394,147,0
chrII	447158	.	G	A	2069	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.01;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2102,225,0
chrII	447264	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:898,99,0
chrII	447300	.	C	T	1086	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.80;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1119,120,0
chrII	447536	.	G	T	2177	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.92;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2210,240,0
chrII	447579	.	A	G	1866	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9857;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.48;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1899,207,0
chrII	447685	.	T	C	1018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.212;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.181;QD=23.14;ReadPosRankSum=1.654;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1051,117,0
chrII	447707	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.07;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:910,102,0
chrII	447726	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.27;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1111,120,0
chrII	447876	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7400;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.55;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2006,216,0
chrII	448135	.	G	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.85;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1917,213,0
chrII	448470	.	G	A	2218	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.3640;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.12;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2251,246,0
chrII	448507	.	G	T	2754	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.21;SB=-1.462e+03	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2787,303,0
chrII	448634	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1497,165,0
chrII	449152	.	T	A	1936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=7.759;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.393;QD=19.76;ReadPosRankSum=2.374;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:99:1969,219,0
chrII	449253	.	C	T	2404	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.34;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2437,261,0
chrII	449416	.	T	C	937	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.12;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:970,105,0
chrII	449588	.	G	A	3271.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.3593;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.81;SB=-1.486e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3271,363,0
chrII	450377	.	T	C	2154	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.98;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2187,240,0
chrII	450938	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.59;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1501,165,0
chrII	451124	.	G	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.19;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1343,144,0
chrII	451203	.	T	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1226,132,0
chrII	451343	.	G	A	728	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=16.93;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:761,84,0
chrII	451344	.	A	T	745	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=3.340;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.042;QD=18.17;ReadPosRankSum=1.564;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:84:778,84,0
chrII	451373	.	G	A	622	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=15.95;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:69:655,69,0
chrII	451454	.	G	T	838	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.05;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:871,96,0
chrII	451599	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.87;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1464,162,0
chrII	452036	.	A	G	1048	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=9.3753;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.39;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1081,117,0
chrII	452218	.	A	G	649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=6.173;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.494;QD=22.38;ReadPosRankSum=1.614;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:1,28:29:75:682,75,0
chrII	452365	.	T	C	599	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.97;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:632,69,0
chrII	452408	.	C	T	311	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=10.03;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:36:344,36,0
chrII	452468	.	G	A	518	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.7091;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=11.02;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:63:551,63,0
chrII	452518	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.89;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1087,117,0
chrII	452891	.	G	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9200;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.55;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2017,213,0
chrII	453044	.	C	T	1528	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.59;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1561,165,0
chrII	453048	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=19.92;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1487,162,0
chrII	453417	.	G	A	2138	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.2725;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.76;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2171,228,0
chrII	453556	.	A	T	2046	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.09;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2079,225,0
chrII	453581	.	G	A	2082	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.82;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2115,231,0
chrII	453718	.	G	A	2275	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.87;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2308,240,0
chrII	454021	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=81;Dels=0.00;FS=5.847;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-1.138;QD=17.49;ReadPosRankSum=2.863;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:3,78:81:99:1450,162,0
chrII	454122	.	T	C	833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.650;DP=55;Dels=0.00;FS=6.154;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.204;QD=15.15;ReadPosRankSum=2.872;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:3,52:55:96:866,96,0
chrII	454135	.	T	C	892	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=14.62;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:925,105,0
chrII	454261	.	G	A	938	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.37;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:971,102,0
chrII	454272	.	A	G	887	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.06;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:920,99,0
chrII	454336	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.886;QD=19.25;ReadPosRankSum=2.381;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1400,153,0
chrII	454371	.	T	A	2184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=96;Dels=0.00;FS=2.568;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.379;QD=22.75;ReadPosRankSum=2.927;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:3,93:96:99:2217,237,0
chrII	454467	.	T	G	1560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.993;QD=20.80;ReadPosRankSum=1.686;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1593,177,0
chrII	454488	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.30;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1801,198,0
chrII	454587	.	A	G	936	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=15.34;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:969,108,0
chrII	454598	.	C	T	981	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=14.64;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1014,111,0
chrII	454753	.	T	C	3012	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.99;SB=-1.634e+03	GT:AD:DP:GQ:PL	1/1:0,135:137:99:3045,336,0
chrII	454884	.	T	C	1115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=3.054;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.147;QD=20.27;ReadPosRankSum=2.360;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:1148,129,0
chrII	455010	.	T	A	1461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=10.481;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=0.018;QD=21.17;ReadPosRankSum=2.379;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1494,159,0
chrII	455029	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=5.051;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.039;QD=21.98;ReadPosRankSum=1.689;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1813,201,0
chrII	455204	.	C	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.69;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1195,129,0
chrII	455272	.	A	G	68.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;MQRankSum=-1.738;QD=5.71;ReadPosRankSum=0.869;SB=-1.313e+02	GT:AD:DP:GQ:PL	1/1:1,11:12:12:101,12,0
chrII	455407	.	A	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.9967;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.16;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1195,135,0
chrII	455916	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.8462;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=17.21;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1444,159,0
chrII	455991	.	A	G	1625	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=1.048;QD=19.82;ReadPosRankSum=1.689;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1658,186,0
chrII	456055	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.58;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1315,147,0
chrII	456132	.	T	G	1349	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.44;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1382,153,0
chrII	456187	.	G	C	976	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=16.83;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1009,111,0
chrII	456231	.	A	G	850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=69;Dels=0.00;FS=2.748;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.16;MQ0=0;MQRankSum=-0.232;QD=12.32;ReadPosRankSum=2.379;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:883,102,0
chrII	456240	.	G	A	857	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=12.24;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:96:890,96,0
chrII	456243	.	G	A	869	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.917;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;MQRankSum=0.929;QD=12.59;ReadPosRankSum=0.377;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:96:902,96,0
chrII	456258	.	A	G	819	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=12.60;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:93:852,93,0
chrII	456336	.	G	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=20.48;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1999,219,0
chrII	456431	.	C	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.37;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1622,174,0
chrII	456442	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.53;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1478,159,0
chrII	456535	.	C	T	1037	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.57;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1070,114,0
chrII	456657	.	G	T	1420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.628;QD=19.19;ReadPosRankSum=1.230;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,70:74:99:1453,159,0
chrII	456662	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=5.5879;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=20.91;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1371,144,0
chrII	456718	.	G	C	1058	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=14.90;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1091,120,0
chrII	456733	.	C	T	275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.972;DP=76;Dels=0.00;FS=11.712;HaplotypeScore=98.9701;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=-2.551;QD=3.62;ReadPosRankSum=-4.721;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:49,27:76:33:308,33,0
chrII	456771	.	G	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=15.16;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1140,123,0
chrII	457002	.	G	A	816	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.74;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:93:849,93,0
chrII	457014	.	G	A	978	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=18.11;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1011,108,0
chrII	457048	.	A	G	943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5151;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.139;QD=14.73;ReadPosRankSum=0.538;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:2,60:64:99:976,111,0
chrII	457101	.	A	G	893	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.848;QD=19.00;ReadPosRankSum=1.659;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:926,105,0
chrII	457215	.	G	A	916	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.96;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:949,102,0
chrII	457395	.	G	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.89;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1323,141,0
chrII	457751	.	G	T	2526	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.96;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2559,273,0
chrII	457818	.	C	T	2737	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.88;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2770,294,0
chrII	458104	.	G	A	2274	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.87;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2307,246,0
chrII	458570	.	T	C	2241	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.36;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2274,246,0
chrII	458604	.	A	C	1912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=6.424;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.688;QD=23.90;ReadPosRankSum=1.688;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1945,216,0
chrII	458640	.	G	C	1455	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.21;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1488,162,0
chrII	458748	.	T	C	2171	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.38;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2204,240,0
chrII	458800	.	C	T	2175	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.77;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2208,240,0
chrII	458813	.	G	C	1985	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.27;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2018,219,0
chrII	458841	.	G	A	2130	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.48;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2163,228,0
chrII	458919	.	C	T	2460	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.85;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2493,261,0
chrII	459048	.	T	C	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.056;QD=21.94;ReadPosRankSum=1.676;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1393,153,0
chrII	460763	.	A	G	2785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=7.443;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.140;QD=24.65;ReadPosRankSum=1.701;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,110:113:99:2818,303,0
chrII	472853	.	T	C	2159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=3.052;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.542;QD=22.73;ReadPosRankSum=2.372;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:2,93:95:99:2192,243,0
chrII	473429	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.39;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1250,138,0
chrII	473605	.	T	G	1061	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.68;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1094,120,0
chrII	474179	.	C	T	693	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=7.4808;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.32;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:726,78,0
chrII	474281	.	G	A	2188	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=24.31;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2221,234,0
chrII	474348	.	A	G	1855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=4.559;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.866;QD=23.19;ReadPosRankSum=1.689;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1888,207,0
chrII	475550	.	A	G	1142	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=3.237;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.204;QD=19.36;ReadPosRankSum=1.674;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1175,129,0
chrII	475760	.	G	A	947	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=16.61;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:980,111,0
chrII	475856	.	T	C	1313	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.24;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1346,153,0
chrII	476954	.	C	T	4112.01	PASS	AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.66;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,198:199:99:4112,459,0
chrII	476966	.	G	A	4653.01	PASS	AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.05;SB=-1.385e+03	GT:AD:DP:GQ:PL	1/1:0,211:211:99:4653,496,0
chrII	477343	.	A	G	1062	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.675;QD=17.41;ReadPosRankSum=1.675;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1095,123,0
chrII	479201	.	G	A	1841	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=24.55;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1874,198,0
chrII	479267	.	C	T	985	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=35.2271;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=16.69;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1018,111,0
chrII	479286	.	A	G	107.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=2.667;HaplotypeScore=7.8894;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=2.187;QD=2.28;ReadPosRankSum=1.871;SB=-4.491e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:18:140,18,0
chrII	479318	.	T	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.77;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1197,126,0
chrII	479376	.	T	C	2418	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.18;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2451,267,0
chrII	479536	.	C	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.47;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1691,186,0
chrII	479625	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.480;QD=21.45;ReadPosRankSum=1.543;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1234,135,0
chrII	479684	.	A	G	1782	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=20.96;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1815,195,0
chrII	479744	.	G	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=16.40;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1591,177,0
chrII	479752	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=17.32;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1713,180,0
chrII	480069	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.27;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1729,183,0
chrII	480074	.	A	G	1519	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.08;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1552,168,0
chrII	480137	.	C	T	1894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.369;QD=17.87;ReadPosRankSum=1.666;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,104:106:99:1927,187,0
chrII	480143	.	C	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=18.32;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2030,216,0
chrII	480150	.	T	C	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.5132;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.597;QD=16.65;ReadPosRankSum=1.674;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2031,219,0
chrII	480237	.	G	A	1987	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.10;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2020,213,0
chrII	480324	.	A	G	1657	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.636;QD=22.39;ReadPosRankSum=1.588;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1690,186,0
chrII	480497	.	C	T	2739	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.7439;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.24;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2772,294,0
chrII	482984	.	G	A	1113	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.19;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1146,129,0
chrII	483785	.	A	G	2493	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.26;SB=-1.474e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2526,276,0
chrII	483944	.	A	G	1086	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1119,123,0
chrII	484231	.	A	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.90;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1726,192,0
chrII	484506	.	G	A	1214	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.23;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1247,132,0
chrII	484558	.	C	T	1265	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=17.09;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1298,144,0
chrII	484574	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.25;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1566,165,0
chrII	484617	.	G	A	1843	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.25;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1876,204,0
chrII	484651	.	G	C	2334	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.66;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2367,264,0
chrII	485107	.	T	C	1989	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2022,225,0
chrII	485257	.	T	G	2417	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.39;SB=-1.448e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2450,273,0
chrII	485396	.	T	C	971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.527;QD=20.66;ReadPosRankSum=1.657;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:99:1004,111,0
chrII	485585	.	A	G	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=93;Dels=0.00;FS=2.597;HaplotypeScore=9.3999;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.207;QD=20.44;ReadPosRankSum=2.925;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:3,90:93:99:1934,213,0
chrII	485633	.	C	T	956	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.38;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:989,111,0
chrII	485764	.	T	C	662	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=16.55;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:695,78,0
chrII	489580	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.905;QD=20.88;ReadPosRankSum=1.629;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1432,159,0
chrII	490619	.	A	C	1722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=5.798;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.410;QD=22.66;ReadPosRankSum=1.641;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1755,192,0
chrII	490733	.	G	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.9200;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=12.58;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,82:86:99:1115,120,0
chrII	491265	.	C	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.10;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1058,114,0
chrII	492025	.	A	C	1412	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.34;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1445,156,0
chrII	495579	.	G	A	2621	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.66;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2654,294,0
chrII	495627	.	C	T	1842	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.1610;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.24;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1875,198,0
chrII	498026	.	G	A	2022	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2055,219,0
chrII	498348	.	G	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.09;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1312,138,0
chrII	498404	.	T	A	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=4.964;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.828;QD=17.90;ReadPosRankSum=1.632;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1268,141,0
chrII	498500	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1222,135,0
chrII	498575	.	A	G	1123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=48;Dels=0.00;FS=3.031;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.996;QD=23.40;ReadPosRankSum=2.343;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:2,45:48:99:1156,126,0
chrII	498596	.	C	T	935	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.37;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:99:968,102,0
chrII	498623	.	C	T	873	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.79;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:906,96,0
chrII	498674	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=22.02;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1156,129,0
chrII	498695	.	C	T	831	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=18.47;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:93:864,93,0
chrII	498697	.	T	C	854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-1.270;QD=18.98;ReadPosRankSum=1.655;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:887,99,0
chrII	498782	.	T	C	542	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=15.49;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:63:575,63,0
chrII	498905	.	A	G	526	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.14;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:60:559,60,0
chrII	498935	.	C	T	413	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=15.30;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:48:446,48,0
chrII	498959	.	G	A	420	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=15.00;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:51:453,51,0
chrII	499010	.	G	A	975	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.20;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1008,108,0
chrII	499037	.	G	A	947	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.94;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:980,105,0
chrII	499049	.	T	A	880	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=16.00;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:913,99,0
chrII	499070	.	A	G	661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.267;QD=12.71;ReadPosRankSum=1.666;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:78:694,78,0
chrII	499194	.	A	C	1245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=7.871;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.247;QD=25.41;ReadPosRankSum=1.662;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1278,141,0
chrII	499401	.	A	C	972	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.00;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1005,111,0
chrII	499454	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.49;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1372,153,0
chrII	499494	.	G	T	1031	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.43;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1064,111,0
chrII	499558	.	T	A	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;DP=32;Dels=0.00;FS=24.095;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=52.54;MQ0=0;MQRankSum=0.701;QD=0.72;ReadPosRankSum=-3.342;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:21,11:32:53:53,0,152
chrII	499559	.	G	A	19.06	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.463;DP=27;Dels=0.00;FS=10.447;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=1.388;QD=0.71;ReadPosRankSum=-2.732;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,5:27:49:49,0,179
chrII	499560	.	C	A	14.18	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.602;DP=27;Dels=0.00;FS=6.628;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=53.14;MQ0=0;MQRankSum=-0.046;QD=0.53;ReadPosRankSum=-1.871;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:23,4:27:44:44,0,216
chrII	499621	.	G	T	962	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.67;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:995,108,0
chrII	499780	.	T	C	1058	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.35;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1091,120,0
chrII	499937	.	T	C	1733	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3559;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.51;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1766,192,0
chrII	499985	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.12;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1482,159,0
chrII	500320	.	T	G	1545	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.31;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1578,174,0
chrII	500498	.	T	C	1753	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.47;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1786,195,0
chrII	500677	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.88;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1410,156,0
chrII	500795	.	G	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1337,141,0
chrII	500843	.	T	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1476,159,0
chrII	500915	.	A	T	1676	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.61;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1709,189,0
chrII	500944	.	C	G	1638	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.47;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1671,180,0
chrII	500945	.	A	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.38;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1684,180,0
chrII	501201	.	A	G	1793	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=21.87;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1826,198,0
chrII	501490	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=17.35;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1803,198,0
chrII	501537	.	C	G	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=138;Dels=0.00;FS=3.305;HaplotypeScore=4.2505;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;MQRankSum=0.468;QD=10.21;ReadPosRankSum=1.707;SB=-1.647e+03	GT:AD:DP:GQ:PL	1/1:1,136:138:99:1442,162,0
chrII	501576	.	A	T	1942	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=14.07;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:1975,210,0
chrII	501636	.	T	C	2242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=4.446;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.420;QD=21.77;ReadPosRankSum=1.698;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2275,246,0
chrII	501746	.	T	C	1829	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.32;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1862,207,0
chrII	501990	.	C	T	1532	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.28;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1565,171,0
chrII	502058	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.31;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1520,162,0
chrII	502224	.	G	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.16;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1324,147,0
chrII	502292	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.79;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1406,150,0
chrII	502305	.	A	T	1358	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.341;QD=21.90;ReadPosRankSum=1.621;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1391,147,0
chrII	502313	.	G	A	1417	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.14;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1450,153,0
chrII	502453	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.77;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1487,162,0
chrII	502627	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DP=56;Dels=0.00;FS=6.756;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=2.274;QD=23.37;ReadPosRankSum=0.508;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1342,147,0
chrII	503196	.	C	T	937	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:970,102,0
chrII	503310	.	G	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.19;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1520,165,0
chrII	503967	.	A	G	859	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=14.32;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:96:892,96,0
chrII	504171	.	A	G	862	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.459;QD=22.68;ReadPosRankSum=1.641;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:99:895,99,0
chrII	504587	.	C	T	688	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.19;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:78:721,78,0
chrII	504615	.	T	C	794	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.36;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:90:827,90,0
chrII	504739	.	G	A	791	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.04;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.83;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:824,93,0
chrII	504741	.	C	T	794	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.04;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.89;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:827,90,0
chrII	504833	.	T	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1337,147,0
chrII	505396	.	T	A	911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.767;DP=132;Dels=0.02;FS=0.000;HaplotypeScore=75.4147;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;MQRankSum=-0.385;QD=6.90;ReadPosRankSum=0.715;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:8,118:129:99:944,102,0
chrII	505399	.	A	T	806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=132;Dels=0.01;FS=37.570;HaplotypeScore=140.7308;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;MQRankSum=1.262;QD=6.11;ReadPosRankSum=2.728;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:51,79:131:90:839,90,0
chrII	505431	.	G	A	687	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=0;QD=4.98;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,138:138:81:720,81,0
chrII	505640	.	T	C	870	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.71;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:903,102,0
chrII	505691	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=19.35;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:78:691,78,0
chrII	505856	.	C	T	2579	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.45;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2612,285,0
chrII	506292	.	A	G	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.522;QD=18.37;ReadPosRankSum=1.680;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1264,141,0
chrII	506342	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.57;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1073,114,0
chrII	506364	.	G	C	964	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.51;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:997,108,0
chrII	506696	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.40;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1133,120,0
chrII	506915	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.38;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1273,135,0
chrII	507219	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.1867;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.70;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1422,156,0
chrII	507274	.	G	A	2117	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.33;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2150,228,0
chrII	507323	.	A	T	2085	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.43;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2118,231,0
chrII	507473	.	T	C	1636	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.04;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1669,189,0
chrII	507533	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1729,195,0
chrII	507938	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.20;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1570,168,0
chrII	508130	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.53;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1137,123,0
chrII	508226	.	G	A	1784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9705;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.640;QD=23.47;ReadPosRankSum=0.162;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1817,192,0
chrII	508255	.	A	G	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.509;QD=22.87;ReadPosRankSum=1.676;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1451,159,0
chrII	508385	.	T	A	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=64;Dels=0.00;FS=3.062;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.984;QD=19.97;ReadPosRankSum=2.334;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1311,144,0
chrII	508631	.	G	A	1720	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.98;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1753,195,0
chrII	508712	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=4.710;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.512;QD=23.21;ReadPosRankSum=1.683;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1681,186,0
chrII	508784	.	C	T	2042	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.20;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2075,234,0
chrII	508875	.	C	A	2225	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.19;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2258,252,0
chrII	508946	.	A	G	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7616;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.259;QD=20.80;ReadPosRankSum=1.653;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1863,204,0
chrII	509103	.	T	C	2516	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.69;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2549,276,0
chrII	509108	.	T	C	2523	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.38;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2556,285,0
chrII	509222	.	G	A	1612	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.08;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1645,177,0
chrII	509321	.	T	C	1833	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.91;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1866,207,0
chrII	509360	.	G	A	2021	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.1895;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.05;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2054,225,0
chrII	509396	.	A	T	2028	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.04;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2061,225,0
chrII	509507	.	C	T	2164	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.78;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2197,234,0
chrII	509627	.	T	C	2191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.318;QD=22.13;ReadPosRankSum=1.697;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:1,97:99:99:2224,246,0
chrII	509717	.	C	T	1198	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=16.64;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1231,138,0
chrII	509720	.	A	G	1191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.187;DP=73;Dels=0.00;FS=5.359;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.255;QD=16.32;ReadPosRankSum=3.115;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:4,69:73:99:1224,132,0
chrII	509885	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.81;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1379,147,0
chrII	510237	.	A	G	1432	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.73;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1465,159,0
chrII	511946	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1559,165,0
chrII	512167	.	T	C	1767	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.56;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1800,198,0
chrII	512285	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=6.451;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.335;QD=19.90;ReadPosRankSum=2.382;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1486,165,0
chrII	512345	.	C	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.92;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1707,180,0
chrII	512880	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.64;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1457,159,0
chrII	512993	.	G	A	3127	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,134:136:99:3160,336,0
chrII	513202	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.7979;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.69;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1549,171,0
chrII	513496	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1258,138,0
chrII	513533	.	T	C	1548	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.50;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1581,174,0
chrII	514688	.	C	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.82;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1950,207,0
chrII	514830	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.66;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2078,222,0
chrII	514893	.	A	G	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=3.212;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.709;QD=21.58;ReadPosRankSum=1.693;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1954,213,0
chrII	515050	.	T	G	1809	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.33;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1842,201,0
chrII	515130	.	T	C	1720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.634;QD=20.98;ReadPosRankSum=1.648;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1753,195,0
chrII	515157	.	G	A	2025	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.01;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2058,219,0
chrII	515211	.	G	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.65;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1480,165,0
chrII	515316	.	C	G	1463	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1496,162,0
chrII	516311	.	A	G	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.558;DP=60;Dels=0.00;FS=5.667;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.380;QD=20.58;ReadPosRankSum=-1.674;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1268,119,0
chrII	516836	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.07;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1768,195,0
chrII	516986	.	G	A	2531	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.10;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2564,270,0
chrII	517631	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.30;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1291,141,0
chrII	518133	.	A	G	1106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.57;ReadPosRankSum=1.662;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1139,126,0
chrII	519668	.	A	C	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.488;QD=21.66;ReadPosRankSum=1.651;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1896,207,0
chrII	520147	.	C	T	1854	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.9810;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.15;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1887,204,0
chrII	520881	.	C	T	2278	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2311,252,0
chrII	526248	.	G	A	814	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=17.70;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:93:847,93,0
chrII	526512	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.48;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1124,123,0
chrII	526527	.	T	C	1053	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.85;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1086,117,0
chrII	526594	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.66;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1232,135,0
chrII	526608	.	T	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.32;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1506,159,0
chrII	526673	.	G	A	1662	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.58;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1695,180,0
chrII	535166	.	A	C	1719	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=20.71;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1752,189,0
chrII	535190	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=19.31;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1539,162,0
chrII	535193	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=18.62;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1467,156,0
chrII	535517	.	C	T	949	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.61;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:982,105,0
chrII	535535	.	C	T	777	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=18.07;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:810,84,0
chrII	535549	.	A	G	672	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=16.00;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:78:705,78,0
chrII	535736	.	A	G	2546	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.73;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2579,282,0
chrII	535983	.	T	C	2236	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.1770;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.90;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2269,246,0
chrII	536351	.	A	G	1397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1961;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.000;QD=19.68;ReadPosRankSum=1.683;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1430,159,0
chrII	536426	.	C	A	2966	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.54;SB=-1.643e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2999,321,0
chrII	536637	.	A	G	1585	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=17.42;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1618,180,0
chrII	536661	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=3.727;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.565;QD=15.84;ReadPosRankSum=-0.715;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1490,165,0
chrII	536700	.	G	A	1252	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=14.73;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1285,138,0
chrII	536784	.	C	G	2228	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.84;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,97:102:99:2261,252,0
chrII	536859	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.4101;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.61;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1543,168,0
chrII	536917	.	C	T	1586	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.1359;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.33;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1619,171,0
chrII	537174	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1639;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.35;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1613,171,0
chrII	538047	.	G	A	1979	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2012,225,0
chrII	538919	.	A	C	2216	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.38;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2249,243,0
chrII	538968	.	T	A	2756	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.12;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2789,294,0
chrII	539253	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=15.02;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1295,147,0
chrII	539483	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=25.47;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1816,195,0
chrII	539637	.	T	C	1666	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.14;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1699,183,0
chrII	539810	.	A	T	1214	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.68;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1247,135,0
chrII	539825	.	G	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.37;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1072,117,0
chrII	539861	.	A	G	978	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.81;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1011,111,0
chrII	539981	.	G	A	1746	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.07;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1779,195,0
chrII	540238	.	A	G	878	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=1.485;QD=20.42;ReadPosRankSum=1.650;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:1,41:43:99:911,99,0
chrII	540838	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.09;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1880,201,0
chrII	541110	.	G	A	1855	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.02;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=14.38;SB=-1.555e+03	GT:AD:DP:GQ:PL	1/1:0,124:126:99:1888,207,0
chrII	541111	.	T	A	1780	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=14.24;SB=-1.591e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:1813,192,0
chrII	541145	.	G	A	2013	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=16.23;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2046,228,0
chrII	541344	.	T	C	2767	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.68;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2800,306,0
chrII	541358	.	C	T	2609	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.11;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2642,282,0
chrII	541559	.	T	C	4295.01	PASS	AC=2;AF=1.00;AN=2;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.26;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,211:212:99:4295,471,0
chrII	541560	.	G	A	4487.01	PASS	AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.27;SB=-1.371e+03	GT:AD:DP:GQ:PL	1/1:0,211:211:99:4487,478,0
chrII	541582	.	A	G	3699.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.5544;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.087;QD=20.21;ReadPosRankSum=2.101;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:2,181:183:99:3699,405,0
chrII	542052	.	T	G	1683	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.86;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1716,186,0
chrII	542121	.	C	T	1739	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.88;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1772,189,0
chrII	542175	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.04;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1664,180,0
chrII	542283	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.01;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1816,198,0
chrII	542367	.	G	A	1930	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.44;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1963,210,0
chrII	542402	.	G	A	2134	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.5214;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.70;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2167,231,0
chrII	542481	.	A	C	1857	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1890,207,0
chrII	542562	.	C	T	1747	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5453;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.05;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1780,192,0
chrII	543006	.	T	C	1862	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.16;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1895,204,0
chrII	543299	.	A	G	1497	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.95;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1530,165,0
chrII	545201	.	C	T	2073	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.03;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2106,225,0
chrII	545648	.	T	C	1446	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1479,162,0
chrII	545886	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.07;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1694,180,0
chrII	546015	.	A	C	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.749;QD=21.70;ReadPosRankSum=2.369;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1357,150,0
chrII	546224	.	T	C	1407	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.588;QD=19.54;ReadPosRankSum=1.684;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1440,159,0
chrII	546316	.	A	G	1051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=3.900;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.449;QD=19.46;ReadPosRankSum=1.668;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1084,117,0
chrII	546330	.	C	A	862	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.74;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:895,96,0
chrII	546691	.	A	G	1394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.611;QD=20.20;ReadPosRankSum=1.681;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1427,156,0
chrII	546732	.	C	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.0227;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.44;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1341,150,0
chrII	546933	.	A	G	1745	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.433;QD=21.54;ReadPosRankSum=1.689;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1778,198,0
chrII	547137	.	A	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=22.18;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1408,159,0
chrII	547149	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.66;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1350,153,0
chrII	547380	.	T	G	1505	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=17.71;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1538,168,0
chrII	547397	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=16.56;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1341,141,0
chrII	547403	.	A	C	1229	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=16.39;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1262,138,0
chrII	547422	.	G	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=14.33;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1108,120,0
chrII	547427	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=12.93;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:938,102,0
chrII	547480	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-1.681;QD=19.56;ReadPosRankSum=1.681;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1363,153,0
chrII	547516	.	G	C	1525	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.61;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1558,171,0
chrII	547535	.	A	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=16.58;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1144,126,0
chrII	547559	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=16.74;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1121,120,0
chrII	548249	.	C	T	1951	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.13;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1984,213,0
chrII	548425	.	T	C	748	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.22;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:87:781,87,0
chrII	548443	.	T	C	595	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.83;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:66:628,66,0
chrII	549466	.	C	A	1096	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.2514;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.37;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,47:49:99:1129,123,0
chrII	549496	.	G	T	1396	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.07;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1429,156,0
chrII	549535	.	A	C	1482	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.52;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1515,165,0
chrII	549576	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.21;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1205,132,0
chrII	549769	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.70;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2312,246,0
chrII	550847	.	A	C	1487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=0.489;QD=18.59;ReadPosRankSum=1.599;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1520,168,0
chrII	553403	.	A	G	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.208;QD=22.28;ReadPosRankSum=1.686;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1704,186,0
chrII	553663	.	C	T	995	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1028,108,0
chrII	553711	.	G	A	1615	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.94;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1648,183,0
chrII	553780	.	G	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=17.80;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1475,156,0
chrII	553786	.	A	G	1346	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=17.48;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1379,150,0
chrII	553854	.	T	C	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.495;QD=18.46;ReadPosRankSum=1.683;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1344,147,0
chrII	553978	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=69;Dels=0.00;FS=12.339;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.105;QD=21.33;ReadPosRankSum=2.897;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:3,65:69:99:1505,168,0
chrII	554104	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.01;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1945,204,0
chrII	554275	.	T	A	1144	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.505;QD=18.75;ReadPosRankSum=1.675;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1177,129,0
chrII	554386	.	C	T	2046	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.73;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2079,219,0
chrII	554441	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-1.386;QD=20.38;ReadPosRankSum=1.683;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1480,159,0
chrII	554455	.	A	G	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=65;Dels=0.00;FS=3.844;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=-0.247;QD=18.63;ReadPosRankSum=1.677;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:99:1244,135,0
chrII	554467	.	G	A	1116	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.92;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1149,123,0
chrII	554498	.	G	A	1113	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.53;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1146,120,0
chrII	554537	.	G	A	1159	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.33;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1192,126,0
chrII	554577	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.76;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1194,126,0
chrII	555081	.	A	G	1619	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.76;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1652,183,0
chrII	555369	.	T	C	784	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.04;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:817,90,0
chrII	555607	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=19.28;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1286,138,0
chrII	555641	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.96;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1111,117,0
chrII	555819	.	C	T	1247	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.27;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1280,135,0
chrII	555881	.	G	T	964	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.51;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:997,105,0
chrII	556110	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.66;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2078,234,0
chrII	556272	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.129;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.655;QD=18.20;ReadPosRankSum=1.217;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1398,153,0
chrII	556275	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=17.89;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1357,147,0
chrII	556518	.	T	A	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.689;QD=21.07;ReadPosRankSum=1.607;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1824,204,0
chrII	556539	.	T	C	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=81;Dels=0.00;FS=2.682;HaplotypeScore=5.8704;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.433;QD=21.31;ReadPosRankSum=2.357;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1759,198,0
chrII	556686	.	T	C	2572	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.2001;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.25;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2605,282,0
chrII	556857	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.56;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1251,135,0
chrII	556935	.	C	G	1033	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.12;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1066,117,0
chrII	557007	.	G	C	1230	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.21;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1263,138,0
chrII	557374	.	C	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.21;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1221,132,0
chrII	557514	.	C	T	1728	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.34;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1761,183,0
chrII	557651	.	T	A	1951	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.17;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1984,207,0
chrII	557670	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.40;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1563,174,0
chrII	557763	.	G	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1457,156,0
chrII	558214	.	T	A	1042	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.17;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1075,117,0
chrII	558231	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=2.805;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.733;QD=20.80;ReadPosRankSum=2.367;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1260,141,0
chrII	558255	.	A	G	1614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.855;QD=21.52;ReadPosRankSum=1.686;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1647,183,0
chrII	558455	.	C	T	650	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=1.299;QD=16.25;ReadPosRankSum=0.260;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:72:683,72,0
chrII	558457	.	A	C	641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.347;QD=16.02;ReadPosRankSum=1.646;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:75:674,75,0
chrII	558471	.	A	G	624	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=14.51;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:657,72,0
chrII	558499	.	T	C	693	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=47;Dels=0.00;FS=3.405;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=-0.979;QD=14.74;ReadPosRankSum=1.657;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:81:726,81,0
chrII	558576	.	T	C	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=64.4607;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.607;QD=20.16;ReadPosRankSum=1.687;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1585,171,0
chrII	558597	.	A	C	1517	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7190;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.70;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1550,171,0
chrII	558881	.	C	T	2362	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=25.67;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2395,252,0
chrII	559000	.	C	T	2160	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9577;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.74;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2193,234,0
chrII	559131	.	T	C	2462	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.5868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.52;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2495,273,0
chrII	559186	.	A	G	1738	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.3620;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.012;QD=17.21;ReadPosRankSum=2.401;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:2,98:101:99:1771,192,0
chrII	559359	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.17;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1364,147,0
chrII	559378	.	G	A	999	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.50;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1032,111,0
chrII	559515	.	A	G	656	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.862;QD=17.73;ReadPosRankSum=2.810;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:3,34:37:75:689,75,0
chrII	559650	.	C	T	570	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=16.29;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,33:35:63:603,63,0
chrII	559695	.	A	G	535	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.7384;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=15.74;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,33:34:63:568,63,0
chrII	559732	.	T	C	405	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=15.58;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:48:438,48,0
chrII	559922	.	C	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=27.7584;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.76;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1057,114,0
chrII	559993	.	G	A	859	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.98;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,42:43:93:892,93,0
chrII	560167	.	T	A	1267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.550;QD=21.84;ReadPosRankSum=1.611;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1300,141,0
chrII	560335	.	T	C	2109	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.52;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2142,237,0
chrII	560500	.	C	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.14;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1302,141,0
chrII	560716	.	T	C	2463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=119;Dels=0.00;FS=5.240;HaplotypeScore=12.7576;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.838;QD=20.70;ReadPosRankSum=2.941;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:3,115:119:99:2496,279,0
chrII	561521	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.45;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1378,147,0
chrII	562770	.	T	A	1866	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8181;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.95;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1899,198,0
chrII	562903	.	A	G	1173	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.889;QD=20.58;ReadPosRankSum=2.364;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1206,129,0
chrII	563013	.	T	A	561	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.872;DP=35;Dels=0.00;FS=4.599;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=2.239;QD=16.03;ReadPosRankSum=3.229;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:5,30:35:63:594,63,0
chrII	563087	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=21.5891;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.38;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1331,141,0
chrII	564041	.	T	A	1429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.3641;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.879;QD=20.71;ReadPosRankSum=1.582;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1462,156,0
chrII	564235	.	C	T	1495	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.93;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1528,162,0
chrII	564636	.	T	C	799	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.59;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:37:93:832,93,0
chrII	564639	.	G	A	882	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:99:915,99,0
chrII	565493	.	C	T	2181	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=25.07;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2214,234,0
chrII	565601	.	A	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.18;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1337,147,0
chrII	565627	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.577;QD=20.28;ReadPosRankSum=0.866;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1270,135,0
chrII	565711	.	T	C	934	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.78;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:967,108,0
chrII	565729	.	G	A	913	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.23;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:946,102,0
chrII	565735	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.2124;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.17;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:981,102,0
chrII	565832	.	A	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.26;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1691,183,0
chrII	566028	.	G	T	1154	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=19.90;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1187,129,0
chrII	566056	.	T	C	701	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=14.91;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:81:734,81,0
chrII	566061	.	G	A	932	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.27;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:965,102,0
chrII	566177	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=68;Dels=0.00;FS=2.938;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.163;QD=19.15;ReadPosRankSum=2.377;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1335,147,0
chrII	566552	.	G	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.09;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1511,162,0
chrII	567297	.	T	C	2662	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.37;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2695,291,0
chrII	567480	.	G	A	4365.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.53;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,170:171:99:4365,463,0
chrII	567612	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1341,141,0
chrII	567660	.	A	C	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.582;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.068;QD=20.11;ReadPosRankSum=1.637;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1501,165,0
chrII	567682	.	G	C	1553	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.41;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1586,171,0
chrII	568357	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.33;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1193,129,0
chrII	568406	.	T	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.14;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1161,129,0
chrII	568465	.	G	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.00;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1733,189,0
chrII	568762	.	T	G	2090	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.97;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2123,228,0
chrII	568819	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=7.325;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-0.579;QD=13.87;ReadPosRankSum=2.391;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1184,132,0
chrII	568820	.	T	G	1156	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=13.93;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1189,132,0
chrII	568986	.	G	T	1772	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.61;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1805,192,0
chrII	569064	.	T	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.25;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1477,162,0
chrII	569301	.	T	A	2460	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=23.88;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2493,261,0
chrII	569302	.	T	C	2348	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.02;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2381,258,0
chrII	569460	.	C	T	2146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.857;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.052;QD=21.46;ReadPosRankSum=0.962;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2179,215,0
chrII	569699	.	A	C	1674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.247;QD=19.93;ReadPosRankSum=1.691;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1707,183,0
chrII	569708	.	A	G	1647	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.09;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1680,183,0
chrII	569872	.	G	C	1874	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.03;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1907,207,0
chrII	570264	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=2.946;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.313;QD=17.41;ReadPosRankSum=2.333;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1130,129,0
chrII	570301	.	A	G	1679	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.75;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1712,189,0
chrII	570754	.	G	A	2198	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.32;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2231,243,0
chrII	570929	.	G	A	2023	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.5599;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.07;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2056,219,0
chrII	571050	.	G	A	2383	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.47;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2416,258,0
chrII	571089	.	C	T	2372	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.96;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2405,264,0
chrII	571218	.	G	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.14;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1584,171,0
chrII	571243	.	C	T	1911	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.72;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1944,207,0
chrII	571411	.	A	G	3408.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.30;SB=-1.954e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:3408,375,0
chrII	571717	.	T	G	2648	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.83;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2681,297,0
chrII	571870	.	T	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1603,174,0
chrII	572502	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.78;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1378,147,0
chrII	572618	.	T	C	1859	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.62;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1892,204,0
chrII	573446	.	G	A	2146	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.0835;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.08;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2179,234,0
chrII	573792	.	A	T	2843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=131;Dels=0.00;FS=3.472;HaplotypeScore=15.3833;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.007;QD=21.70;ReadPosRankSum=1.652;SB=-1.581e+03	GT:AD:DP:GQ:PL	1/1:1,130:131:99:2876,312,0
chrII	573826	.	G	A	3123	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.59;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3156,339,0
chrII	573907	.	A	G	1799	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.31;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1832,201,0
chrII	574593	.	C	A	1801	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.80;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1834,195,0
chrII	574683	.	A	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.02;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1673,183,0
chrII	574755	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.81;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1717,183,0
chrII	574851	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.527;QD=21.55;ReadPosRankSum=1.682;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1520,168,0
chrII	574962	.	G	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.87;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1515,162,0
chrII	575190	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.31;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1346,144,0
chrII	575319	.	A	T	1572	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.96;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1605,177,0
chrII	575523	.	G	A	1370	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.41;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1403,153,0
chrII	575685	.	C	G	1952	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.22;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1985,222,0
chrII	575802	.	C	A	2749	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.8945;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.36;SB=-1.573e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2782,294,0
chrII	576303	.	T	C	1157	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.66;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1190,129,0
chrII	576740	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.71;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1305,144,0
chrII	576803	.	A	G	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.854;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.143;QD=18.29;ReadPosRankSum=1.610;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1606,177,0
chrII	576806	.	G	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.28;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1433,162,0
chrII	576896	.	C	T	1865	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.20;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1898,204,0
chrII	576962	.	A	G	2114	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8319;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.73;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2147,234,0
chrII	576983	.	T	A	1758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.310;QD=18.51;ReadPosRankSum=-0.237;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1791,198,0
chrII	578867	.	A	G	1217	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1250,135,0
chrII	578933	.	T	C	1040	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.26;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1073,120,0
chrII	579038	.	A	T	136.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=3.051;HaplotypeScore=7.6494;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.014;QD=1.55;ReadPosRankSum=2.394;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:21:169,21,0
chrII	579644	.	A	G	985	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.10;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1018,111,0
chrII	579647	.	T	C	969	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=21.07;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1002,111,0
chrII	579957	.	G	A	958	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:991,108,0
chrII	580557	.	C	T	2088	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.2160;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.98;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2121,231,0
chrII	580575	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.9401;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=18.38;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1981,219,0
chrII	580722	.	A	T	1751	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=-1.338;QD=19.90;ReadPosRankSum=1.693;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1784,195,0
chrII	580746	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.14;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1698,183,0
chrII	580809	.	A	T	1971	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.71;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2004,213,0
chrII	580868	.	T	C	1859	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=95;Dels=0.00;FS=4.462;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.039;QD=19.57;ReadPosRankSum=1.659;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1892,204,0
chrII	581091	.	A	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.15;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1133,126,0
chrII	581109	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.53;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1205,132,0
chrII	581129	.	T	A	1240	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.33;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1273,135,0
chrII	581181	.	C	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=18.15;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1140,129,0
chrII	581322	.	A	G	1861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.614;QD=21.15;ReadPosRankSum=1.693;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1894,207,0
chrII	581355	.	C	T	1660	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.28;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1693,180,0
chrII	581397	.	G	T	947	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.73;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:980,105,0
chrII	581460	.	A	G	846	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.15;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:96:879,96,0
chrII	581465	.	A	G	893	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.443;QD=20.30;ReadPosRankSum=1.652;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:926,102,0
chrII	582285	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.76;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1981,216,0
chrII	582470	.	A	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.33;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1680,180,0
chrII	582680	.	T	C	1728	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=13.0996;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.42;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1761,195,0
chrII	583262	.	C	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1303,135,0
chrII	583825	.	T	G	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=5.477;HaplotypeScore=6.8420;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.693;QD=23.26;ReadPosRankSum=0.924;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1452,162,0
chrII	585769	.	T	C	747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=53;Dels=0.00;FS=8.003;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.833;QD=14.09;ReadPosRankSum=2.260;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:2,50:53:87:780,87,0
chrII	585896	.	G	A	1255	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.93;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1288,138,0
chrII	585962	.	C	T	894	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:927,102,0
chrII	587830	.	G	C	677	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.92;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:710,78,0
chrII	589842	.	A	G	832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=5.682;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.609;QD=22.49;ReadPosRankSum=1.639;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:93:865,93,0
chrII	589871	.	A	G	672	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=18.67;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:705,78,0
chrII	589872	.	G	T	703	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=19.53;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:736,78,0
chrII	589895	.	T	C	835	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.56;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:868,96,0
chrII	589941	.	G	A	1112	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=16.85;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1145,126,0
chrII	590243	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.31;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1269,138,0
chrII	590654	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=57;Dels=0.00;FS=3.090;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.157;QD=22.47;ReadPosRankSum=1.543;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1314,147,0
chrII	590742	.	C	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.40;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1668,177,0
chrII	590898	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.18;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1304,138,0
chrII	590982	.	T	C	1028	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.178;QD=20.56;ReadPosRankSum=1.594;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1061,117,0
chrII	591204	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5509;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.62;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1970,216,0
chrII	591378	.	C	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.93;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1127,126,0
chrII	591877	.	T	C	861	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=12;QD=14.35;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:7,53:60:99:894,99,0
chrII	592744	.	T	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.24;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1171,126,0
chrII	592905	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.72;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1727,189,0
chrII	593091	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.99;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1502,165,0
chrII	593121	.	A	G	1671	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.89;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1704,186,0
chrII	593396	.	T	C	1244	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=61;Dels=0.00;FS=14.774;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.068;QD=20.39;ReadPosRankSum=2.883;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:3,57:61:99:1277,141,0
chrII	593778	.	G	T	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487;DP=43;Dels=0.00;FS=34.033;HaplotypeScore=8.0315;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=2.278;QD=0.37;ReadPosRankSum=-0.261;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,10:43:46:46,0,290
chrII	594781	.	T	C	1519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;DP=76;Dels=0.00;FS=9.933;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.293;QD=19.99;ReadPosRankSum=2.828;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1552,171,0
chrII	595030	.	G	C	1707	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.08;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1740,192,0
chrII	595046	.	C	T	1752	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.9160;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.64;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1785,189,0
chrII	595927	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.952;QD=17.97;ReadPosRankSum=-0.805;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1309,144,0
chrII	596156	.	C	G	1150	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.00;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1183,132,0
chrII	596219	.	C	T	1171	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.54;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1204,129,0
chrII	596258	.	A	T	2452	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.02;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2485,264,0
chrII	596828	.	T	C	1659	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.74;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1692,189,0
chrII	596903	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.40;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1155,123,0
chrII	597009	.	G	A	2253	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.62;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2286,255,0
chrII	597011	.	A	C	2338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.145;QD=18.70;ReadPosRankSum=1.648;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:1,123:125:99:2371,261,0
chrII	597100	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1596,171,0
chrII	597455	.	A	G	1952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.471;QD=20.99;ReadPosRankSum=1.620;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1985,219,0
chrII	597518	.	C	T	1945	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.10;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1978,210,0
chrII	597806	.	C	T	2263	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=25.43;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2296,243,0
chrII	597929	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=23.18;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1748,189,0
chrII	597978	.	C	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.39;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1834,201,0
chrII	598133	.	C	T	2691	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.39;SB=-1.436e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2724,291,0
chrII	598137	.	C	T	2608	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.61;SB=-1.477e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2641,279,0
chrII	598223	.	T	C	2058	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.18;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2091,228,0
chrII	598246	.	C	A	1934	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.42;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1967,207,0
chrII	598254	.	T	G	1723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=0.589;QD=17.76;ReadPosRankSum=1.696;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1756,195,0
chrII	598559	.	C	T	2259	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.82;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2292,246,0
chrII	598628	.	G	C	1950	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.74;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:1983,225,0
chrII	598740	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.14;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1354,150,0
chrII	598783	.	G	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1134,123,0
chrII	598928	.	C	T	1263	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.14;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1296,138,0
chrII	599098	.	T	C	1109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.917;QD=21.33;ReadPosRankSum=1.664;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1142,126,0
chrII	599150	.	A	T	1372	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.11;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1405,153,0
chrII	599204	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.67;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1356,144,0
chrII	599384	.	T	C	1846	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.07;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1879,207,0
chrII	599456	.	T	C	1114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.742;QD=17.68;ReadPosRankSum=1.677;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1147,126,0
chrII	599567	.	A	G	1382	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.68;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1415,153,0
chrII	599573	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.70;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1454,162,0
chrII	599687	.	C	T	2250	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.28;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2283,243,0
chrII	599705	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.72;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1711,189,0
chrII	599732	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.57;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1392,150,0
chrII	599780	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.11;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1293,138,0
chrII	599929	.	A	C	1484	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.48;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1517,168,0
chrII	600186	.	C	T	956	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:989,105,0
chrII	600391	.	T	A	939	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.87;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:972,102,0
chrII	600418	.	A	T	1037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.070;DP=56;Dels=0.00;FS=15.386;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.970;QD=18.52;ReadPosRankSum=3.197;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:4,52:56:99:1070,120,0
chrII	600505	.	T	A	891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.074;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.135;QD=18.56;ReadPosRankSum=2.289;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:924,99,0
chrII	600570	.	C	T	1329	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.61;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1362,144,0
chrII	600598	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.50;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1203,129,0
chrII	600627	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.66;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1302,141,0
chrII	600653	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=22.77;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1217,129,0
chrII	600978	.	C	T	2220	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.55;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2253,249,0
chrII	600991	.	T	C	2157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.303;DP=103;Dels=0.00;FS=5.185;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.657;QD=20.94;ReadPosRankSum=3.371;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:4,99:103:99:2190,237,0
chrII	601087	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.53;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1339,150,0
chrII	601097	.	T	C	1124	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=16.29;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1157,123,0
chrII	601104	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=13.80;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1082,114,0
chrII	601142	.	A	G	704	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=11.35;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:81:737,81,0
chrII	601146	.	G	A	707	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=11.78;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:78:740,78,0
chrII	601238	.	A	G	1699	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.67;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1732,189,0
chrII	601251	.	G	A	1998	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.98;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2031,222,0
chrII	601479	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.5304;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.018;QD=20.81;ReadPosRankSum=0.876;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:2,67:70:99:1490,162,0
chrII	601718	.	G	A	2344	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.54;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2377,255,0
chrII	601893	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5246;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.48;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1303,144,0
chrII	602016	.	T	C	1117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=75;Dels=0.00;FS=16.231;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.135;QD=14.89;ReadPosRankSum=3.335;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:4,70:75:99:1150,126,0
chrII	602022	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=15.90;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1273,138,0
chrII	602047	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=17.42;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1496,159,0
chrII	602166	.	A	G	2401	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.06;SB=-1.331e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2434,261,0
chrII	602171	.	C	T	2380	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.06;SB=-1.370e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2413,249,0
chrII	602182	.	T	C	2133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.264;QD=19.22;ReadPosRankSum=1.638;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2166,240,0
chrII	602361	.	C	T	814	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=15.96;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:90:847,90,0
chrII	602483	.	T	G	2035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=101;Dels=0.00;FS=4.002;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.697;QD=20.15;ReadPosRankSum=1.626;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,97:101:99:2068,225,0
chrII	602550	.	C	T	1614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=0.411;QD=16.47;ReadPosRankSum=1.375;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1647,183,0
chrII	602551	.	T	A	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-0.727;QD=16.02;ReadPosRankSum=1.316;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1635,183,0
chrII	602687	.	C	T	946	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.279;QD=15.02;ReadPosRankSum=0.503;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:979,108,0
chrII	602697	.	G	A	1011	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=15.80;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1044,111,0
chrII	602847	.	G	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.44;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1176,129,0
chrII	602855	.	G	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.45;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1080,120,0
chrII	603825	.	C	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.45;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1546,162,0
chrII	603837	.	A	T	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.877;QD=15.17;ReadPosRankSum=1.647;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1262,144,0
chrII	603865	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.492;QD=15.25;ReadPosRankSum=1.561;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,80:83:99:1299,147,0
chrII	603916	.	T	C	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=3.380;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.177;QD=19.24;ReadPosRankSum=1.697;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1919,216,0
chrII	604051	.	A	T	1550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.9390;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.522;QD=23.48;ReadPosRankSum=1.575;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1583,168,0
chrII	605039	.	G	A	920	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.78;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:953,102,0
chrII	605667	.	G	A	1037	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.16;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1070,114,0
chrII	605775	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7685;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.90;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1143,126,0
chrII	605930	.	T	C	2381	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=20.53;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2414,267,0
chrII	605959	.	G	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.16;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1777,189,0
chrII	606590	.	C	G	2767	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.12;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2800,306,0
chrII	607924	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.99;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1439,162,0
chrII	608066	.	T	C	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.442;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.187;QD=21.81;ReadPosRankSum=1.654;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1974,219,0
chrII	608176	.	T	C	1568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.138;QD=22.40;ReadPosRankSum=1.683;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1601,174,0
chrII	608350	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.15;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1577,174,0
chrII	609547	.	C	T	1285	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.08;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1318,144,0
chrII	610045	.	A	G	2311	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.07;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2344,258,0
chrII	610295	.	A	G	1043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=56;Dels=0.00;FS=3.019;HaplotypeScore=8.3686;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.922;QD=18.62;ReadPosRankSum=2.360;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:2,53:56:99:1076,117,0
chrII	610313	.	T	G	919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=54;Dels=0.00;FS=3.900;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.321;QD=17.02;ReadPosRankSum=1.604;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:952,105,0
chrII	610376	.	G	A	1126	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=15.64;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1159,126,0
chrII	610437	.	A	T	2426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.4235;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.314;QD=20.91;ReadPosRankSum=1.583;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2459,264,0
chrII	610492	.	T	G	2424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=4.051;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.994;QD=19.55;ReadPosRankSum=1.704;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:1,121:124:99:2457,267,0
chrII	610508	.	C	T	2413	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.5475;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.56;SB=-1.472e+03	GT:AD:DP:GQ:PL	1/1:0,127:130:99:2446,267,0
chrII	610797	.	T	C	1230	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=15.97;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1263,141,0
chrII	610895	.	T	C	1771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.044;DP=98;Dels=0.00;FS=3.609;HaplotypeScore=8.9631;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.343;QD=18.07;ReadPosRankSum=2.120;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:2,95:98:99:1804,198,0
chrII	611052	.	G	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.86;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1472,156,0
chrII	611178	.	A	G	1007	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.00;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1040,114,0
chrII	611232	.	A	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.52;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1609,177,0
chrII	613136	.	C	T	1836	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=20.40;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1869,204,0
chrII	613145	.	G	A	1908	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.74;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1941,204,0
chrII	613202	.	G	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.52;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2180,240,0
chrII	613388	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.53;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1265,141,0
chrII	613415	.	A	G	1454	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.70;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1487,165,0
chrII	613517	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.40;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1563,168,0
chrII	614131	.	A	G	1620	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.77;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1653,180,0
chrII	614308	.	G	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.13;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1787,192,0
chrII	614359	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=80;Dels=0.00;FS=7.397;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.172;QD=19.15;ReadPosRankSum=2.388;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:2,77:80:99:1565,174,0
chrII	614485	.	G	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.46;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1185,129,0
chrII	614507	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=17.05;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1022,108,0
chrII	614520	.	A	G	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.293;QD=17.23;ReadPosRankSum=1.679;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1153,129,0
chrII	614550	.	G	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=16.87;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1298,138,0
chrII	614683	.	T	C	1294	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.22;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1327,147,0
chrII	614787	.	C	G	1091	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=18.49;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1124,126,0
chrII	614824	.	A	G	825	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=48;Dels=0.00;FS=2.829;HaplotypeScore=6.9656;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=1.212;QD=17.19;ReadPosRankSum=2.348;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:96:858,96,0
chrII	614924	.	G	A	1025	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.28;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1058,114,0
chrII	615097	.	T	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.32;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1291,141,0
chrII	615157	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.79;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1359,150,0
chrII	615204	.	C	A	1451	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.44;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1484,165,0
chrII	615346	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.74;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1291,138,0
chrII	615566	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.7646;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=16.62;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1379,153,0
chrII	615644	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.459;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.698;QD=17.31;ReadPosRankSum=1.577;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1193,132,0
chrII	615654	.	G	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.00;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1325,144,0
chrII	615698	.	G	A	1158	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.68;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1191,129,0
chrII	615775	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.61;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1073,114,0
chrII	615887	.	A	G	628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=7.4031;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.249;QD=14.27;ReadPosRankSum=1.652;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:1,42:44:75:661,75,0
chrII	615970	.	C	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.74;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1420,159,0
chrII	616310	.	G	A	2096	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.7384;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.15;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2129,240,0
chrII	616376	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1811,198,0
chrII	616532	.	C	T	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=82;Dels=0.00;FS=2.936;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.037;QD=23.43;ReadPosRankSum=0.676;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1954,207,0
chrII	616646	.	C	T	2206	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.38;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2239,240,0
chrII	616805	.	A	C	1795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.061;QD=21.12;ReadPosRankSum=1.651;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1828,204,0
chrII	616838	.	G	A	1867	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.71;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,81:86:99:1900,201,0
chrII	617504	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.25;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1292,144,0
chrII	617606	.	A	C	757	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:790,87,0
chrII	617783	.	A	T	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.188;QD=22.47;ReadPosRankSum=1.683;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1606,171,0
chrII	617810	.	T	C	1563	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.05;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1596,174,0
chrII	618167	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.64;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1245,138,0
chrII	618353	.	C	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.64;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1546,165,0
chrII	618506	.	A	G	1037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.577;QD=19.94;ReadPosRankSum=1.664;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1070,120,0
chrII	618597	.	T	C	2099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=-1.127;QD=20.38;ReadPosRankSum=1.698;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2132,234,0
chrII	618716	.	G	A	1799	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.68;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1832,198,0
chrII	618717	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.58;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1844,195,0
chrII	618736	.	T	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=8.2520;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=17.72;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1539,171,0
chrII	618844	.	A	T	1131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.5037;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=0.510;QD=22.18;ReadPosRankSum=1.664;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1164,123,0
chrII	618892	.	G	A	997	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=16.62;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1030,114,0
chrII	618901	.	G	A	902	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=14.79;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:935,99,0
chrII	618907	.	A	G	944	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=13.68;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:977,108,0
chrII	618908	.	T	C	973	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.533;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-1.000;QD=13.70;ReadPosRankSum=1.683;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1006,111,0
chrII	618941	.	T	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=15.45;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1176,129,0
chrII	618987	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=15.40;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1219,129,0
chrII	619007	.	T	G	952	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.14;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:985,105,0
chrII	619028	.	C	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=15.29;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1195,132,0
chrII	619256	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.31;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1238,132,0
chrII	619502	.	T	C	1850	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.51;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1883,207,0
chrII	619507	.	G	A	1829	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=21.77;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1862,198,0
chrII	619746	.	A	G	1867	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.77;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1900,204,0
chrII	619747	.	A	G	1824	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=82;Dels=0.00;FS=2.827;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.080;QD=22.24;ReadPosRankSum=2.389;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:2,79:82:99:1857,201,0
chrII	620102	.	G	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.77;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1877,198,0
chrII	620149	.	A	G	1809	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.80;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1842,204,0
chrII	620302	.	G	A	2065	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=17.96;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2098,231,0
chrII	620443	.	G	T	3139	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.91;SB=-1.538e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3172,339,0
chrII	620480	.	C	T	3353.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.6368;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.50;SB=-1.594e+03	GT:AD:DP:GQ:PL	1/1:0,147:149:99:3353,369,0
chrII	620513	.	G	A	2988	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.81;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:3021,336,0
chrII	620680	.	A	G	1904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.247;QD=20.70;ReadPosRankSum=1.580;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1937,219,0
chrII	621057	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.78;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1571,171,0
chrII	621285	.	G	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.83;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1421,159,0
chrII	621546	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.15;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1694,183,0
chrII	621963	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.83;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1491,162,0
chrII	622305	.	T	A	1280	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1313,141,0
chrII	622655	.	G	A	1694	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.41;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1727,183,0
chrII	622789	.	G	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=25.30;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1551,165,0
chrII	622849	.	A	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.62;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1741,195,0
chrII	622888	.	C	A	2123	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4934;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.66;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,95:98:99:2156,240,0
chrII	622971	.	T	C	1933	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=2.170;QD=21.72;ReadPosRankSum=2.366;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:2,86:89:99:1966,219,0
chrII	622981	.	A	C	1606	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=7.837;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.636;QD=20.33;ReadPosRankSum=1.601;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1639,180,0
chrII	623027	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=14.39;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:84:767,84,0
chrII	623272	.	C	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.62;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1765,195,0
chrII	623413	.	A	T	2187	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=20.83;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2220,234,0
chrII	623418	.	A	T	2324	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.86;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2357,261,0
chrII	623427	.	A	G	2539	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.09;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2572,282,0
chrII	623785	.	C	T	2108	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.52;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2141,237,0
chrII	623818	.	A	G	2063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.822;QD=20.84;ReadPosRankSum=1.697;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2096,228,0
chrII	623968	.	G	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.44;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1684,186,0
chrII	624009	.	C	T	1882	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.40;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1915,201,0
chrII	624052	.	A	T	2433	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.53;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2466,267,0
chrII	624076	.	T	C	2398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.372;QD=22.41;ReadPosRankSum=1.700;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2431,273,0
chrII	624215	.	A	G	1816	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1849,201,0
chrII	624273	.	A	G	2092	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.79;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2125,240,0
chrII	624493	.	C	T	1073	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.63;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1106,117,0
chrII	624540	.	A	T	1029	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.44;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1062,114,0
chrII	624736	.	C	T	940	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.41;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:973,108,0
chrII	624740	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=3.358;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.600;QD=18.94;ReadPosRankSum=1.466;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1037,114,0
chrII	624762	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.11;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1029,114,0
chrII	624798	.	A	G	842	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=15.59;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:875,96,0
chrII	624805	.	G	A	746	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=13.32;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:84:779,84,0
chrII	624836	.	C	A	769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=1.660;QD=15.69;ReadPosRankSum=-0.072;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:71:802,71,0
chrII	625077	.	T	C	848	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.84;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:96:881,96,0
chrII	625150	.	C	G	1029	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=18.05;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1062,117,0
chrII	625203	.	C	A	892	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=14.16;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:925,102,0
chrII	625210	.	G	A	859	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=12.10;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:96:892,96,0
chrII	625234	.	T	G	1108	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=16.06;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1141,126,0
chrII	625298	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.306;QD=21.59;ReadPosRankSum=1.681;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1501,165,0
chrII	625628	.	A	C	1896	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.00;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1929,210,0
chrII	625690	.	C	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.20;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1703,183,0
chrII	625721	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.87;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1543,168,0
chrII	625733	.	G	C	1550	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.24;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1583,174,0
chrII	625761	.	T	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.34;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1594,177,0
chrII	625843	.	T	C	1951	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.795;QD=22.95;ReadPosRankSum=1.651;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1984,216,0
chrII	625876	.	T	C	2110	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.93;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2143,234,0
chrII	626092	.	A	G	1993	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.19;MQ0=0;QD=22.14;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2026,222,0
chrII	626278	.	C	T	1702	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.79;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1735,198,0
chrII	626455	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.46;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1711,180,0
chrII	626470	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.77;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1591,168,0
chrII	626608	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=0.655;QD=19.26;ReadPosRankSum=1.639;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1458,159,0
chrII	626623	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=18.97;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1532,171,0
chrII	626656	.	G	A	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.1050;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=1.107;QD=18.93;ReadPosRankSum=1.588;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1396,150,0
chrII	626680	.	A	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.10;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1370,144,0
chrII	627001	.	T	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.66;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1302,144,0
chrII	627055	.	A	T	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=3.282;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.207;QD=20.21;ReadPosRankSum=1.627;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1387,153,0
chrII	628267	.	T	C	397	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=10.45;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:48:430,48,0
chrII	628269	.	T	C	423	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=11.75;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:51:456,51,0
chrII	628345	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=53;Dels=0.00;FS=3.819;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.621;QD=13.85;ReadPosRankSum=1.602;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:84:767,84,0
chrII	628674	.	T	C	325	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=13.00;SB=-7.612e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:39:358,39,0
chrII	628807	.	T	C	205.01	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=10.25;SB=-2.380e-02	GT:AD:DP:GQ:PL	1/1:0,20:20:27:238,27,0
chrII	628898	.	T	C	122.13	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=7.63;SB=-1.247e-01	GT:AD:DP:GQ:PL	1/1:0,12:16:18:155,18,0
chrII	628943	.	C	G	296	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=18.50;SB=-8.426e-03	GT:AD:DP:GQ:PL	1/1:0,16:16:36:329,36,0
chrII	629013	.	G	A	696	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=22.45;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,29:31:78:729,78,0
chrII	629133	.	A	G	1145	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.82;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1178,129,0
chrII	629145	.	A	G	1158	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.9208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.30;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1191,135,0
chrII	629259	.	G	A	2061	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=25.44;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2094,222,0
chrII	629323	.	C	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.88;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1703,183,0
chrII	629636	.	C	T	1889	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.99;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1922,204,0
chrII	629641	.	G	A	1848	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.74;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1881,201,0
chrII	629782	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.2832;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.01;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1504,165,0
chrII	630052	.	C	T	890	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=15.61;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:923,102,0
chrII	630671	.	T	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1098,120,0
chrII	630784	.	C	T	1372	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.54;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1405,150,0
chrII	630833	.	C	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.59;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1760,192,0
chrII	631243	.	C	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.24;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1857,201,0
chrII	631321	.	T	C	1443	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=77;Dels=0.00;FS=12.333;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.496;QD=18.74;ReadPosRankSum=2.386;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1476,162,0
chrII	631353	.	G	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.42;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1356,141,0
chrII	631572	.	A	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.07;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1438,153,0
chrII	631668	.	T	C	1041	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1074,114,0
chrII	631864	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.53;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1029,114,0
chrII	631870	.	A	G	987	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=3.499;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=-0.332;QD=20.56;ReadPosRankSum=1.585;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:1020,111,0
chrII	632170	.	G	A	1764	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=25.20;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1797,192,0
chrII	632747	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=77;Dels=0.00;FS=2.825;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.049;QD=22.82;ReadPosRankSum=2.320;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1790,198,0
chrII	632812	.	G	A	2125	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.5636;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.83;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2158,240,0
chrII	632857	.	C	T	1993	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.20;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2026,216,0
chrII	632896	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.77;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2101,225,0
chrII	632908	.	C	T	2120	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.99;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2153,231,0
chrII	632938	.	G	A	2000	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.83;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2033,216,0
chrII	632980	.	G	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=17.90;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1590,177,0
chrII	633052	.	G	T	1884	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.91;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1917,204,0
chrII	633129	.	C	T	1992	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.19;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2025,216,0
chrII	633176	.	T	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.40;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1597,174,0
chrII	633326	.	G	A	1909	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.75;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1942,207,0
chrII	633358	.	T	C	1656	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.48;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1689,183,0
chrII	633402	.	G	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=15.23;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1114,120,0
chrII	633409	.	G	A	1043	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.57;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1076,117,0
chrII	633468	.	T	G	1418	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.97;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1451,159,0
chrII	633618	.	A	C	1816	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.15;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1849,201,0
chrII	633855	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.27;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1522,165,0
chrII	633876	.	G	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.85;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1462,159,0
chrII	633957	.	G	A	2184	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.51;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2217,234,0
chrII	633960	.	C	T	2105	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.11;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2138,234,0
chrII	634599	.	G	A	1446	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.95;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1479,159,0
chrII	635127	.	G	A	2098	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.19;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2131,237,0
chrII	635267	.	A	G	1495	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.51;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1528,165,0
chrII	635445	.	A	G	1528	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.37;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1561,171,0
chrII	635478	.	C	T	1706	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.75;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1739,183,0
chrII	635928	.	C	A	1709	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.2027;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.59;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1742,186,0
chrII	636168	.	C	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.3743;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.18;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1760,192,0
chrII	636267	.	C	T	2764	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.03;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2797,303,0
chrII	636372	.	T	C	3167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.5850;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.900;QD=24.18;ReadPosRankSum=1.705;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:1,128:131:99:3200,348,0
chrII	636537	.	A	G	2233	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.12;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2266,255,0
chrII	636709	.	C	G	2293	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.26;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2326,258,0
chrII	636994	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=78;Dels=0.00;FS=7.549;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.205;QD=19.15;ReadPosRankSum=2.323;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1527,165,0
chrII	637041	.	C	T	1902	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.61;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1935,204,0
chrII	637063	.	T	A	2094	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.53;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2127,228,0
chrII	637264	.	T	C	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.0593;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.223;QD=18.16;ReadPosRankSum=1.630;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1268,141,0
chrII	637366	.	T	C	2290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.3819;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.280;QD=21.60;ReadPosRankSum=1.699;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2323,258,0
chrII	637651	.	C	G	1842	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0941;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.24;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1875,207,0
chrII	637785	.	T	C	2405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.229;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.335;QD=19.40;ReadPosRankSum=1.704;SB=-1.499e+03	GT:AD:DP:GQ:PL	1/1:1,121:124:99:2438,267,0
chrII	637795	.	C	A	2257	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.65;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2290,252,0
chrII	637928	.	T	G	2057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.227;QD=20.57;ReadPosRankSum=1.627;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2090,234,0
chrII	637990	.	C	T	2055	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.86;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2088,219,0
chrII	638086	.	A	G	1982	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.32;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2015,219,0
chrII	638716	.	A	G	888	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.89;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:921,102,0
chrII	639220	.	C	G	831	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.89;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:864,96,0
chrII	639337	.	C	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.59;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1253,138,0
chrII	639427	.	A	G	821	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.55;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:854,93,0
chrII	639700	.	C	T	1425	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.07;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1458,153,0
chrII	639745	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.69;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1341,141,0
chrII	639793	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=19.96;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1430,162,0
chrII	639832	.	G	A	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.137;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.534;QD=20.71;ReadPosRankSum=-1.188;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1483,159,0
chrII	640689	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.21;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1539,171,0
chrII	640834	.	T	C	1459	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1492,165,0
chrII	641071	.	T	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0065;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=17.37;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1266,141,0
chrII	641302	.	C	T	1135	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.83;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1168,126,0
chrII	641433	.	A	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.19;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1050,114,0
chrII	641467	.	A	G	1558	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.25;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1591,174,0
chrII	641695	.	A	G	1124	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.44;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1157,129,0
chrII	641842	.	C	T	1525	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.89;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1558,168,0
chrII	642049	.	C	T	726	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.29;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:759,81,0
chrII	642483	.	G	A	940	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.08;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:973,105,0
chrII	642492	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.513;QD=17.30;ReadPosRankSum=0.192;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:1,53:56:99:1002,114,0
chrII	642773	.	G	A	2211	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.89;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2244,252,0
chrII	642806	.	A	G	1397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.678;QD=20.25;ReadPosRankSum=1.682;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1430,156,0
chrII	642969	.	A	G	921	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;MQRankSum=1.287;QD=13.16;ReadPosRankSum=1.683;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:954,105,0
chrII	642976	.	A	C	769	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9171;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=-0.559;QD=12.40;ReadPosRankSum=1.118;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:90:802,90,0
chrII	642978	.	G	A	836	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=13.48;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:93:869,93,0
chrII	643098	.	G	T	1822	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.98;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1855,204,0
chrII	643134	.	G	A	1775	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=20.88;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1808,195,0
chrII	643176	.	G	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=19.60;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1640,183,0
chrII	643432	.	G	A	1927	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=23.22;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1960,210,0
chrII	643489	.	G	T	927	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.4424;MLEAC=2;MLEAF=1.00;MQ=37.33;MQ0=0;MQRankSum=-1.386;QD=16.26;ReadPosRankSum=-1.732;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:1,50:57:83:960,83,0
chrII	643492	.	G	T	781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.205;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=1;MQRankSum=-1.732;QD=16.27;ReadPosRankSum=-1.732;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:2,45:48:76:814,76,0
chrII	643866	.	A	T	188.03	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=5.22;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:24:221,24,0
chrII	643914	.	G	A	1654	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=20.42;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1687,177,0
chrII	643915	.	T	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=20.22;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1671,180,0
chrII	643931	.	T	C	2042	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=20.63;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2075,225,0
chrII	643991	.	A	C	1932	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=19.92;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1965,213,0
chrII	644145	.	G	A	719	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;QD=9.34;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:87:752,87,0
chrII	644333	.	G	T	2665	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=11.0558;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.66;SB=-1.638e+03	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2698,288,0
chrII	644482	.	G	C	5079.01	PASS	AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=10.3655;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=24.30;SB=-1.616e+03	GT:AD:DP:GQ:PL	1/1:0,208:209:99:5079,555,0
chrII	644529	.	C	T	5464.01	PASS	AC=2;AF=1.00;AN=2;DP=235;Dels=0.00;FS=0.000;HaplotypeScore=13.0593;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.25;SB=-1.641e+03	GT:AD:DP:GQ:PL	1/1:0,234:234:99:5464,597,0
chrII	644646	.	C	T	3385.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2121;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.02;SB=-1.509e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3385,381,0
chrII	644790	.	T	C	3393.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.0239;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.21;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,158:160:99:3393,366,0
chrII	645021	.	C	T	1986	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.13;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2019,216,0
chrII	645058	.	C	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=15.91;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1656,183,0
chrII	645081	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=14.37;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,99:102:99:1499,165,0
chrII	645084	.	C	T	1384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;MQRankSum=-0.147;QD=14.72;ReadPosRankSum=-0.074;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1417,150,0
chrII	645127	.	C	A	1371	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=13.99;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1404,150,0
chrII	645132	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=105;Dels=0.00;FS=3.047;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;MQRankSum=-1.943;QD=11.99;ReadPosRankSum=2.401;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:2,101:105:99:1292,141,0
chrII	645158	.	A	G	1734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=107;Dels=0.00;FS=3.095;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.500;QD=16.21;ReadPosRankSum=1.699;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:2,103:107:99:1767,195,0
chrII	645289	.	G	A	2524	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=17.4290;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.21;SB=-1.444e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2557,273,0
chrII	645341	.	A	G	1754	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.20;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1787,201,0
chrII	645592	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.67;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1852,195,0
chrII	645738	.	A	G	1576	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.01;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1609,177,0
chrII	645807	.	T	C	1617	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.85;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1650,183,0
chrII	646209	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.78;MQ0=0;QD=24.13;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1698,186,0
chrII	646524	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.43;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1169,123,0
chrII	646716	.	A	T	2918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=132;Dels=0.00;FS=7.267;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.367;QD=22.11;ReadPosRankSum=2.152;SB=-1.433e+03	GT:AD:DP:GQ:PL	1/1:2,130:132:99:2951,312,0
chrII	646843	.	A	G	1360	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=16.59;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1393,150,0
chrII	646863	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.61;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1354,147,0
chrII	646935	.	A	T	2654	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.70;SB=-1.550e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2687,285,0
chrII	647284	.	C	T	3592.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=9.8892;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.38;SB=-1.855e+03	GT:AD:DP:GQ:PL	1/1:0,168:168:99:3592,381,0
chrII	647422	.	C	G	1402	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.03;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1435,159,0
chrII	647496	.	A	C	1722	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.92;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1755,192,0
chrII	647502	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.87;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1769,195,0
chrII	647924	.	A	G	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=3.066;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=2.271;QD=22.90;ReadPosRankSum=2.379;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1613,177,0
chrII	648275	.	C	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.37;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1764,189,0
chrII	648554	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.42;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1447,153,0
chrII	648668	.	A	G	1497	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.96;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1530,168,0
chrII	649517	.	A	T	1464	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1497,162,0
chrII	649588	.	C	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=13.1527;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.99;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1274,138,0
chrII	649931	.	T	C	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.9047;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.676;QD=22.32;ReadPosRankSum=1.690;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1863,204,0
chrII	650411	.	A	G	1663	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.32;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1696,183,0
chrII	650526	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.79;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1188,126,0
chrII	650548	.	G	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.07;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1158,126,0
chrII	650605	.	C	T	1318	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.83;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1351,147,0
chrII	650619	.	A	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=17.87;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1391,153,0
chrII	650631	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.90;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1250,141,0
chrII	650976	.	G	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.91;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1586,177,0
chrII	651310	.	C	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6028;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=17.46;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1395,156,0
chrII	651616	.	T	A	528	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=12.88;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:63:561,63,0
chrII	651634	.	C	G	746	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=16.22;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:779,87,0
chrII	651951	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.61;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1654,177,0
chrII	652086	.	C	T	1261	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.51;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1294,141,0
chrII	652113	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=15.77;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1263,135,0
chrII	652362	.	C	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.29;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1053,114,0
chrII	652373	.	G	A	1100	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.03;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1133,120,0
chrII	652587	.	T	C	1193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.726;QD=18.94;ReadPosRankSum=1.676;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1226,135,0
chrII	652830	.	T	C	2228	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1177;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.89;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2261,243,0
chrII	653007	.	G	A	1117	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0070;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=16.19;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1150,123,0
chrII	653133	.	C	T	5128.01	PASS	AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.52;SB=-2.738e+03	GT:AD:DP:GQ:PL	1/1:0,216:218:99:5128,544,0
chrII	653235	.	T	A	40.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.241;DP=142;Dels=0.00;FS=2.589;HaplotypeScore=131.3945;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.411;QD=0.29;ReadPosRankSum=-2.397;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:139,3:142:9:73,9,0
chrII	653239	.	G	A	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=123.6624;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=0.13;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:6:49,6,0
chrII	653275	.	A	G	1846	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.51;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1879,210,0
chrII	653427	.	T	C	2221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=113;Dels=0.00;FS=4.142;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;MQRankSum=0.016;QD=19.65;ReadPosRankSum=1.700;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:1,108:113:99:2254,243,0
chrII	653429	.	G	C	2194	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=19.42;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,108:113:99:2227,246,0
chrII	653440	.	C	A	2253	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=19.26;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2286,252,0
chrII	653498	.	C	T	2310	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4912;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.57;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2343,249,0
chrII	653730	.	A	G	1255	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.41;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1288,144,0
chrII	653876	.	G	A	2094	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.35;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2127,225,0
chrII	654127	.	C	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.22;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1327,141,0
chrII	654312	.	C	T	1234	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=21.65;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1267,132,0
chrII	654339	.	C	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.25;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1284,144,0
chrII	654351	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.55;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1304,144,0
chrII	654360	.	T	C	1022	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.25;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1055,114,0
chrII	654388	.	A	G	765	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.21;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:798,87,0
chrII	654500	.	G	A	987	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=18.98;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1020,108,0
chrII	654507	.	T	C	783	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8295;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.02;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:816,87,0
chrII	654523	.	G	T	664	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=11.45;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:75:697,75,0
chrII	654525	.	C	T	724	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=12.27;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:81:757,81,0
chrII	655451	.	G	A	2314	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.7618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2347,261,0
chrII	655511	.	G	A	2821	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.53;SB=-1.544e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2854,300,0
chrII	656242	.	A	G	1989	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.39;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2022,222,0
chrII	656467	.	G	A	2003	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2036,216,0
chrII	656530	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.44;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1588,171,0
chrII	656574	.	T	C	1594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.185;QD=20.70;ReadPosRankSum=1.687;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1627,177,0
chrII	656779	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.68;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1155,126,0
chrII	657120	.	G	T	1797	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.75;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1830,198,0
chrII	657562	.	A	G	1360	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.59;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1393,156,0
chrII	657582	.	T	A	1952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.876;QD=22.44;ReadPosRankSum=1.691;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1985,213,0
chrII	657722	.	C	T	3163	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.96;SB=-1.619e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:3196,345,0
chrII	658786	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.83;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1156,126,0
chrII	658797	.	G	A	1214	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.41;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1247,132,0
chrII	659685	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.42;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1535,171,0
chrII	660237	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=18.72;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1381,153,0
chrII	660519	.	G	A	1065.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;DP=84;Dels=0.00;FS=23.349;HaplotypeScore=11.9055;MLEAC=1;MLEAF=0.500;MQ=49.13;MQ0=2;MQRankSum=4.415;QD=12.68;ReadPosRankSum=0.676;SB=-6.150e+02	GT:AD:DP:GQ:PL	0/1:12,70:84:56:1095,0,56
chrII	660575	.	G	A	854	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=16.11;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:96:887,96,0
chrII	660819	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=17.05;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1022,108,0
chrII	660870	.	T	A	877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.568;DP=57;Dels=0.00;FS=10.823;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=3.854;QD=15.39;ReadPosRankSum=-0.328;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:7,50:57:75:910,75,0
chrII	660972	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.21;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1266,135,0
chrII	661578	.	C	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=1;QD=20.96;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1626,180,0
chrII	662094	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.164;QD=18.62;ReadPosRankSum=1.675;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1169,129,0
chrII	662272	.	C	T	1827	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6996;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.00;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1860,198,0
chrII	662444	.	G	A	1918	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.7136;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.05;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1951,210,0
chrII	662693	.	G	A	920	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.40;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:953,108,0
chrII	662726	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-1.173;QD=13.76;ReadPosRankSum=0.838;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:96:886,96,0
chrII	662737	.	A	G	838	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=13.09;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:93:871,93,0
chrII	662749	.	G	A	736	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=10.82;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:84:769,84,0
chrII	662757	.	T	C	827	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=12.16;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:93:860,93,0
chrII	662911	.	T	C	2880	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.62;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2913,321,0
chrII	663226	.	G	A	1744	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.38;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1777,195,0
chrII	663478	.	C	T	1017	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1050,114,0
chrII	663562	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.3400;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.05;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1256,141,0
chrII	663901	.	T	C	914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.476;QD=16.62;ReadPosRankSum=1.668;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:947,108,0
chrII	664165	.	T	C	1860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.972;QD=22.68;ReadPosRankSum=1.690;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1893,213,0
chrII	664354	.	T	A	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.448;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.495;QD=21.29;ReadPosRankSum=1.685;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1587,168,0
chrII	664761	.	G	T	1922	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.64;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1955,204,0
chrII	665139	.	G	C	1076	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.21;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1109,123,0
chrII	665576	.	C	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.52;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1609,171,0
chrII	665795	.	A	G	1799	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.21;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1832,201,0
chrII	666366	.	A	T	1641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.732;QD=19.31;ReadPosRankSum=1.690;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1674,186,0
chrII	666708	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0939;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.88;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1067,120,0
chrII	666849	.	T	A	905	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.55;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:938,99,0
chrII	666875	.	G	A	633	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=18.09;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:69:666,69,0
chrII	666885	.	G	A	706	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=16.81;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:739,81,0
chrII	667131	.	G	A	596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.466;QD=15.28;ReadPosRankSum=-0.400;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:69:629,69,0
chrII	667170	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.8911;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.84;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:971,105,0
chrII	667779	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1221,135,0
chrII	668585	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=44;Dels=0.00;FS=5.819;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.578;QD=20.09;ReadPosRankSum=1.650;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:1,41:44:99:917,99,0
chrII	668596	.	G	A	982	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.82;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1015,108,0
chrII	668651	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.57;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1252,132,0
chrII	668968	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.39;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1022,108,0
chrII	668984	.	A	G	1066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-0.220;QD=19.38;ReadPosRankSum=1.606;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1099,117,0
chrII	669257	.	C	T	881	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.74;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:914,96,0
chrII	669262	.	C	T	954	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.08;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:987,105,0
chrII	669668	.	G	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.49;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1865,198,0
chrII	670083	.	T	C	1228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=3.061;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.655;QD=18.61;ReadPosRankSum=2.375;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1261,141,0
chrII	670150	.	C	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1861,198,0
chrII	670277	.	G	C	1863	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=15.79;SB=-1.415e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:1896,210,0
chrII	670302	.	G	A	2084	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=15.32;SB=-1.608e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2117,234,0
chrII	670480	.	A	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.04;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1316,141,0
chrII	670742	.	T	C	1939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=94;Dels=0.00;FS=6.256;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.926;QD=20.63;ReadPosRankSum=1.192;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1972,219,0
chrII	671376	.	T	C	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.068;QD=21.52;ReadPosRankSum=1.637;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1604,174,0
chrII	671544	.	A	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.11;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1553,171,0
chrII	671576	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.57;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1329,144,0
chrII	671577	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.02;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1254,138,0
chrII	672003	.	A	G	1167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.382;QD=19.78;ReadPosRankSum=1.674;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1200,132,0
chrII	672013	.	T	C	1252	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.19;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1285,141,0
chrII	672147	.	T	G	1420	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1453,159,0
chrII	672200	.	A	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.81;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1103,120,0
chrII	672318	.	G	A	715	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.44;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:81:748,81,0
chrII	673212	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1646,180,0
chrII	673311	.	G	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.76;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1046,111,0
chrII	673342	.	T	A	564	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=42.8802;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=10.85;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:66:597,66,0
chrII	673390	.	G	T	1016	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=16.13;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1049,108,0
chrII	673645	.	A	G	1248	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.11;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,51:54:99:1281,138,0
chrII	674295	.	T	A	3599.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.2803;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.65;SB=-1.455e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3599,387,0
chrII	674848	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.85;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1601,171,0
chrII	675146	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.16;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1274,138,0
chrII	675204	.	T	A	1717	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.543;HaplotypeScore=2.9114;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.432;QD=16.51;ReadPosRankSum=1.499;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1750,195,0
chrII	675206	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;DP=104;Dels=0.00;FS=3.543;HaplotypeScore=2.9114;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.999;QD=16.68;ReadPosRankSum=1.499;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1768,198,0
chrII	675236	.	C	T	3627.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.59;SB=-2.220e+03	GT:AD:DP:GQ:PL	1/1:0,167:168:99:3627,387,0
chrII	675293	.	A	G	3809.01	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.08;SB=-1.679e+03	GT:AD:DP:GQ:PL	1/1:0,164:165:99:3809,420,0
chrII	675612	.	T	C	1845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=6.657;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.315;QD=20.73;ReadPosRankSum=1.693;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1878,213,0
chrII	675714	.	G	C	2043	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.51;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2076,231,0
chrII	675804	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.5160;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-1.629;QD=21.75;ReadPosRankSum=1.681;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1490,165,0
chrII	675879	.	G	A	1604	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.11;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1637,186,0
chrII	676050	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=2.649;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.760;QD=18.55;ReadPosRankSum=2.382;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1387,153,0
chrII	676055	.	G	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.53;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1339,153,0
chrII	676110	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=17.92;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1467,162,0
chrII	676125	.	T	C	1445	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.07;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1478,162,0
chrII	676163	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=2.674;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.044;QD=19.95;ReadPosRankSum=2.365;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:2,56:59:99:1210,135,0
chrII	676339	.	T	C	2322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=120;Dels=0.00;FS=12.161;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-0.377;QD=19.35;ReadPosRankSum=3.570;SB=-1.506e+03	GT:AD:DP:GQ:PL	1/1:5,114:120:99:2355,255,0
chrII	676341	.	A	C	2321	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=19.84;SB=-1.475e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2354,255,0
chrII	676380	.	C	T	2149	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.85;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2182,240,0
chrII	676447	.	C	T	2540	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.96;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2573,276,0
chrII	676481	.	A	G	2197	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.37;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2230,243,0
chrII	676577	.	G	A	2815	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.26;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2848,315,0
chrII	676632	.	T	C	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.176;QD=22.17;ReadPosRankSum=1.647;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1829,201,0
chrII	676645	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.07;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1487,162,0
chrII	677014	.	A	G	926	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.16;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:959,105,0
chrII	677110	.	T	C	2526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=127;Dels=0.00;FS=4.248;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.206;QD=19.89;ReadPosRankSum=1.704;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:1,124:127:99:2559,285,0
chrII	677653	.	C	T	900	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=16.07;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:933,105,0
chrII	677672	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.4661;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.05;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1176,123,0
chrII	677719	.	A	G	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=51;Dels=0.00;FS=6.205;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.144;QD=19.16;ReadPosRankSum=2.860;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:3,47:51:99:1010,111,0
chrII	678377	.	C	T	1422	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3967;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.31;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1455,159,0
chrII	678410	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0769;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.79;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1367,150,0
chrII	678574	.	G	A	1741	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.49;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1774,198,0
chrII	678648	.	C	T	2118	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.8165;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.97;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2151,234,0
chrII	678941	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1365,144,0
chrII	678984	.	A	G	1383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.6547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.223;QD=20.34;ReadPosRankSum=1.681;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1416,156,0
chrII	679024	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.0580;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.15;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1965,210,0
chrII	679063	.	G	A	1927	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1338;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.22;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1960,219,0
chrII	679168	.	C	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.69;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1175,126,0
chrII	679276	.	A	C	878	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.95;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:911,102,0
chrII	679332	.	G	T	1311	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.00;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1344,144,0
chrII	679502	.	G	A	2108	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.67;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2141,237,0
chrII	679642	.	A	G	990	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.41;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1023,111,0
chrII	679643	.	G	T	925	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=18.14;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:958,108,0
chrII	679650	.	G	A	985	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.58;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1018,108,0
chrII	680372	.	A	G	615	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=14.64;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:66:648,66,0
chrII	680373	.	A	C	604	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=14.73;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:637,66,0
chrII	680550	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.16;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:938,105,0
chrII	680703	.	G	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.52;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1114,120,0
chrII	680726	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.40;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:910,102,0
chrII	681025	.	A	G	1138	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.71;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1171,129,0
chrII	681127	.	T	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.02;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1414,153,0
chrII	681206	.	A	T	599	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.32;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:632,69,0
chrII	681344	.	T	G	1147	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.06;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1180,129,0
chrII	681398	.	C	T	855	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9188;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=15.83;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,50:54:96:888,96,0
chrII	681414	.	A	G	721	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=17.59;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:84:754,84,0
chrII	681488	.	T	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.11;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1084,117,0
chrII	681492	.	A	G	1015	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=17.81;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1048,114,0
chrII	681557	.	G	A	1489	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=70;Dels=0.01;FS=4.281;HaplotypeScore=11.7146;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.474;QD=21.27;ReadPosRankSum=1.681;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,66:69:99:1522,162,0
chrII	682145	.	G	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.28;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1331,144,0
chrII	682192	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.11;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1258,132,0
chrII	682449	.	T	C	771	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.52;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:87:804,87,0
chrII	682462	.	C	T	847	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=16.61;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:880,96,0
chrII	682491	.	T	A	906	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=17.09;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:939,99,0
chrII	682551	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.12;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1321,144,0
chrII	682968	.	G	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.84;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1692,180,0
chrII	683268	.	A	G	2350	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.80;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2383,264,0
chrII	683415	.	C	T	2371	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=6.8006;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.95;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2404,258,0
chrII	683586	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.523;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=17.97;ReadPosRankSum=1.681;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1255,141,0
chrII	684585	.	G	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.55;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1544,162,0
chrII	684795	.	A	G	2030	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.31;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2063,228,0
chrII	684797	.	G	A	2030	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.81;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2063,219,0
chrII	685165	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.85;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1297,141,0
chrII	685306	.	T	C	999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=3.854;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.849;QD=19.21;ReadPosRankSum=1.664;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1032,114,0
chrII	685510	.	C	T	1810	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.23;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1843,198,0
chrII	685662	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.060;QD=21.79;ReadPosRankSum=1.681;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1493,162,0
chrII	686563	.	G	A	2211	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2244,243,0
chrII	686624	.	C	T	2139	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.45;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2172,231,0
chrII	686767	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.53;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1537,168,0
chrII	686783	.	G	A	1609	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.37;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1642,180,0
chrII	687029	.	C	T	1859	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7446;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.95;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1892,201,0
chrII	687350	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.24;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1273,138,0
chrII	687626	.	A	T	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=65;Dels=0.00;FS=8.274;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.023;QD=21.18;ReadPosRankSum=2.373;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:99:1410,153,0
chrII	687872	.	T	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0748;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.66;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1134,126,0
chrII	687980	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.26;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1613,171,0
chrII	688310	.	A	T	1171	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.19;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1204,135,0
chrII	688355	.	C	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.17;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1413,153,0
chrII	688364	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.69;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1569,168,0
chrII	688475	.	G	A	1611	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.65;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1644,174,0
chrII	688487	.	C	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.05;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1519,162,0
chrII	688640	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.56;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1364,144,0
chrII	688700	.	A	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.61;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1243,132,0
chrII	688949	.	T	A	1741	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.52;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1774,189,0
chrII	689085	.	A	C	883	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.40;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:916,102,0
chrII	689156	.	C	T	1379	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6890;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1412,153,0
chrII	689867	.	G	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.25;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1167,129,0
chrII	689912	.	G	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.40;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1255,135,0
chrII	689996	.	A	C	1550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.732;QD=19.14;ReadPosRankSum=1.689;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1583,174,0
chrII	690123	.	T	C	1237	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.33;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1270,138,0
chrII	690313	.	T	C	2603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=122;Dels=0.00;FS=2.820;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-2.026;QD=21.34;ReadPosRankSum=2.409;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:2,120:122:99:2636,288,0
chrII	690330	.	G	A	2423	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.23;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2456,264,0
chrII	691208	.	T	C	2124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=113;Dels=0.00;FS=8.056;HaplotypeScore=9.5677;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.294;QD=18.80;ReadPosRankSum=2.406;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:2,111:113:99:2157,240,0
chrII	691367	.	C	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.93;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1519,162,0
chrII	691485	.	G	T	2084	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.17;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2117,225,0
chrII	691521	.	A	G	2935	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.11;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2968,318,0
chrII	691649	.	G	A	2350	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.2725;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.96;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2383,249,0
chrII	691707	.	G	C	2151	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.51;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2184,243,0
chrII	691742	.	T	C	2183	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.19;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2216,243,0
chrII	691776	.	G	T	2541	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.6839;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.15;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,138:140:99:2574,288,0
chrII	691838	.	G	A	3821.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=6.0064;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=24.18;SB=-1.556e+03	GT:AD:DP:GQ:PL	1/1:0,158:158:99:3821,403,0
chrII	691869	.	G	A	2932	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.68;SB=-1.667e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:2965,330,0
chrII	691880	.	A	G	2596	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=19.52;SB=-1.556e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2629,285,0
chrII	691893	.	T	C	2134	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.93;SB=-1.386e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2167,240,0
chrII	691937	.	C	T	1979	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=15.96;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2012,225,0
chrII	691950	.	C	T	1949	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=18.21;SB=-1.198e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:1982,204,0
chrII	692083	.	C	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.07;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2017,213,0
chrII	692126	.	G	C	2041	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.46;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2074,228,0
chrII	692195	.	A	G	1691	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.14;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1724,189,0
chrII	692366	.	A	T	938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.657;QD=20.39;ReadPosRankSum=1.506;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:971,102,0
chrII	692680	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1221,129,0
chrII	692883	.	C	T	866	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.68;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:899,99,0
chrII	692889	.	C	T	875	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.50;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:908,99,0
chrII	693069	.	A	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.72;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1907,204,0
chrII	693391	.	G	A	2105	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2138,228,0
chrII	693469	.	C	T	1669	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.86;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1702,189,0
chrII	693651	.	T	C	1348	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.74;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1381,150,0
chrII	693825	.	T	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.94;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1180,126,0
chrII	693923	.	T	C	1057	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.553;QD=22.49;ReadPosRankSum=1.659;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1090,120,0
chrII	693925	.	G	A	1056	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=22.96;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1089,117,0
chrII	693928	.	C	T	1044	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.75;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1077,114,0
chrII	694124	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=20.98;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1103,117,0
chrII	694133	.	G	A	982	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.8737;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=20.04;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1015,105,0
chrII	694151	.	T	A	776	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=16.17;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:809,87,0
chrII	694153	.	T	C	699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.290;DP=47;Dels=0.00;FS=3.104;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=-1.143;QD=14.87;ReadPosRankSum=-0.774;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:58:732,58,0
chrII	694443	.	A	T	377	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.829;QD=13.46;ReadPosRankSum=2.275;SB=-6.793e-03	GT:AD:DP:GQ:PL	1/1:2,26:28:45:410,45,0
chrII	694512	.	A	G	573	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.85;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:66:606,66,0
chrII	694669	.	G	A	92.26	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.18;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,5:7:15:125,15,0
chrII	694728	.	G	A	331	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=61.26;MQ0=0;QD=19.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,17:17:42:364,42,0
chrII	695368	.	T	C	1703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.522;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.424;QD=18.71;ReadPosRankSum=1.694;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1736,192,0
chrII	695575	.	T	C	1959	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.05;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1992,216,0
chrII	695857	.	A	T	2199	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.15;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2232,237,0
chrII	696541	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.39;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1623,177,0
chrII	696652	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=2.756;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.383;QD=20.54;ReadPosRankSum=2.383;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1553,171,0
chrII	696781	.	A	G	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.392;QD=21.02;ReadPosRankSum=1.619;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1315,144,0
chrII	697043	.	T	C	2041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.9753;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.384;QD=21.95;ReadPosRankSum=2.397;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2074,228,0
chrII	697455	.	C	T	1427	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.8273;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.68;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:69:99:1460,156,0
chrII	697695	.	C	T	1093	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=20.62;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1126,126,0
chrII	697900	.	T	G	918	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.39;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:951,102,0
chrII	697933	.	C	A	918	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.39;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:951,102,0
chrII	698208	.	C	T	510	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.78;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:57:543,57,0
chrII	698648	.	A	T	2688	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.3924;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.68;SB=-1.655e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2721,297,0
chrII	698958	.	T	C	1593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=84;Dels=0.00;FS=10.200;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.846;QD=18.96;ReadPosRankSum=2.391;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:2,81:84:99:1626,177,0
chrII	699308	.	T	C	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.762;QD=23.10;ReadPosRankSum=1.663;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1188,132,0
chrII	699380	.	G	A	1169	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=15.59;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1202,135,0
chrII	699395	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.21;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1496,168,0
chrII	699560	.	T	C	1955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5885;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.618;QD=21.25;ReadPosRankSum=1.694;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1988,203,0
chrII	699675	.	T	C	2068	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.48;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2101,228,0
chrII	699878	.	A	G	2067	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.67;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2100,228,0
chrII	700005	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.02;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1378,147,0
chrII	700064	.	G	C	861	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.56;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:52:99:894,99,0
chrII	700097	.	T	C	819	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.06;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,48:48:93:852,93,0
chrII	700199	.	A	T	450	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=11.84;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:54:483,54,0
chrII	700223	.	G	C	549	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=14.08;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,37:39:63:582,63,0
chrII	700246	.	T	C	645	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.92;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,34:35:75:678,75,0
chrII	700349	.	C	T	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=0.99;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,18:18:6:49,6,0
chrII	700423	.	T	C	2136	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.996;QD=26.70;ReadPosRankSum=1.689;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:2169,225,0
chrII	700682	.	G	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.72;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1646,171,0
chrII	700715	.	C	T	1466	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.55;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1499,165,0
chrII	700736	.	G	A	1707	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.57;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1740,186,0
chrII	701839	.	C	T	1814	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.1483;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.90;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1847,195,0
chrII	701984	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=17.07;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1194,126,0
chrII	702004	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=5.274;HaplotypeScore=39.4634;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;MQRankSum=-1.516;QD=16.08;ReadPosRankSum=1.624;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1062,117,0
chrII	703256	.	C	G	705	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.79;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:738,84,0
chrII	703873	.	G	A	1474	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.5006;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.47;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1507,162,0
chrII	704219	.	T	C	1882	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.52;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1915,207,0
chrII	704358	.	G	T	833	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:866,93,0
chrII	704922	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.436;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.577;QD=23.44;ReadPosRankSum=1.686;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1791,195,0
chrII	705104	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.20;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1856,204,0
chrII	705229	.	T	A	2105	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.93;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2138,237,0
chrII	705302	.	A	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.17;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1642,183,0
chrII	705344	.	C	T	1465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=4.901;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.325;QD=21.23;ReadPosRankSum=1.427;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1498,159,0
chrII	705516	.	C	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.23;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1611,177,0
chrII	705627	.	A	G	1575	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.45;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1608,174,0
chrII	705633	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.89;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1464,159,0
chrII	705674	.	A	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.14;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1212,132,0
chrII	705828	.	A	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.78;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1423,153,0
chrII	705858	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.29;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,59:63:99:1311,144,0
chrII	706050	.	C	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.97;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1606,174,0
chrII	706086	.	T	C	1470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=2.870;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.251;QD=22.97;ReadPosRankSum=2.373;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1503,162,0
chrII	706227	.	C	A	1048	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=17.47;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1081,117,0
chrII	706228	.	C	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=17.20;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1082,120,0
chrII	706263	.	A	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=16.01;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1186,135,0
chrII	707185	.	G	A	1530	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=22.84;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1563,165,0
chrII	707207	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=20.14;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1322,147,0
chrII	707223	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.16;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1200,132,0
chrII	707238	.	G	T	917	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=14.79;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:950,105,0
chrII	707296	.	A	G	807	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=17.54;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:840,93,0
chrII	707304	.	T	C	736	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.52;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:769,84,0
chrII	707378	.	C	T	860	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=17.55;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:93:893,93,0
chrII	707398	.	C	T	946	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.89;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:979,108,0
chrII	707788	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.16;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1353,150,0
chrII	708159	.	G	A	2387	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.73;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2420,282,0
chrII	708202	.	C	T	1899	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.99;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1932,204,0
chrII	708423	.	A	G	1561	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.8030;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.94;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1594,177,0
chrII	708909	.	A	G	1179	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.98;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1212,135,0
chrII	708952	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.06;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1486,159,0
chrII	709212	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.42;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1468,162,0
chrII	709662	.	C	T	1260	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1293,147,0
chrII	710109	.	A	G	1251	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.699;DP=72;Dels=0.00;FS=5.027;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.133;QD=17.37;ReadPosRankSum=3.655;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:5,67:72:99:1284,141,0
chrII	710934	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.598;QD=22.64;ReadPosRankSum=-1.480;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1278,135,0
chrII	711099	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6147;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.00;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1410,156,0
chrII	711439	.	T	C	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.304;QD=19.90;ReadPosRankSum=1.615;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1824,201,0
chrII	711554	.	A	G	1551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.472;QD=23.50;ReadPosRankSum=1.680;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1584,174,0
chrII	711722	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.00;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1251,132,0
chrII	711792	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.52;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1437,153,0
chrII	711804	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=15.42;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,87:90:99:1421,156,0
chrII	711873	.	C	G	1540	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5457;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.78;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1573,171,0
chrII	712022	.	C	G	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;DP=49;Dels=0.00;FS=74.842;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=59.05;MQ0=0;MQRankSum=0.317;QD=0.98;ReadPosRankSum=-3.936;SB=-1.249e+00	GT:AD:DP:GQ:PL	0/1:39,10:49:78:78,0,637
chrII	716467	.	C	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=18.43;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1157,123,0
chrII	716483	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.92;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1082,120,0
chrII	716745	.	G	T	1957	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.77;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1990,210,0
chrII	719796	.	C	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.94;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1613,177,0
chrII	723175	.	G	C	1495	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1528,168,0
chrII	724346	.	T	C	3770.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=170;Dels=0.00;FS=3.612;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.447;QD=22.18;ReadPosRankSum=1.712;SB=-1.853e+03	GT:AD:DP:GQ:PL	1/1:1,169:170:99:3770,417,0
chrII	724613	.	T	G	1408	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.83;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1441,162,0
chrII	731635	.	C	G	2108	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.33;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,108:115:99:2141,237,0
chrII	732123	.	C	T	1947	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.64;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1980,210,0
chrII	732413	.	A	G	2284	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4743;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.55;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2317,249,0
chrII	735232	.	T	A	2686	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2719,288,0
chrII	739892	.	T	G	1891	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.06;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1924,210,0
chrII	742721	.	C	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1168,129,0
chrII	743045	.	G	C	857	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.93;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:890,99,0
chrII	744063	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.42;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1575,165,0
chrII	744252	.	G	A	1314	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=20.86;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1347,144,0
chrII	744342	.	C	T	948	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.55;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:981,105,0
chrII	744356	.	A	C	944	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=20.09;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:977,108,0
chrII	744413	.	G	T	551	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=10.20;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,53:54:60:584,60,0
chrII	744417	.	A	G	586	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=10.10;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,58:58:69:619,69,0
chrII	744516	.	A	G	456	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=15.20;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:54:489,54,0
chrII	744519	.	A	G	481	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=15.52;SB=-6.101e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:57:514,57,0
chrII	744640	.	A	T	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=0.74;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,36:36:6:58,6,0
chrII	744816	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=25.85;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1248,132,0
chrII	744823	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=22.94;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1180,126,0
chrII	745190	.	G	A	1189	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=17.23;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1222,132,0
chrII	745192	.	C	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=17.63;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1214,135,0
chrII	745280	.	C	A	2357	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.34;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2390,255,0
chrII	745349	.	G	C	1877	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.06;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1910,210,0
chrII	745620	.	G	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.7914;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=18.82;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1764,189,0
chrII	745793	.	G	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.11;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1764,189,0
chrII	745868	.	C	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.36;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1330,144,0
chrII	746171	.	G	A	2075	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.96;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2108,231,0
chrII	746478	.	G	A	1603	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.58;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1636,180,0
chrII	746514	.	C	T	1676	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.49;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1709,186,0
chrII	746583	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.6508;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.60;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1205,129,0
chrII	746619	.	C	T	913	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.56;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:946,102,0
chrII	747177	.	A	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.69;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1291,135,0
chrII	747329	.	C	T	2232	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.75;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2265,237,0
chrII	748042	.	A	G	2401	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.65;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2434,264,0
chrII	748066	.	T	C	2374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.709;QD=22.61;ReadPosRankSum=1.699;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2407,264,0
chrII	748404	.	T	C	1764	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.25;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1797,201,0
chrII	748514	.	A	C	1155	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.24;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1188,132,0
chrII	748630	.	C	G	934	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.68;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:967,105,0
chrII	749056	.	C	T	965	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.10;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:998,105,0
chrII	749314	.	C	G	1365	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.96;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1398,156,0
chrII	749547	.	C	A	1983	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2016,213,0
chrII	749992	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.144;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.575;QD=21.27;ReadPosRankSum=1.680;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1458,162,0
chrII	750067	.	A	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.07;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1101,117,0
chrII	750088	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.30;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1125,120,0
chrII	750157	.	T	C	1440	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=16.94;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1473,159,0
chrII	750649	.	A	C	1108	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.15;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1141,123,0
chrII	750709	.	A	C	1080	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.6440;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=16.87;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1113,123,0
chrII	750714	.	G	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=15.53;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1058,111,0
chrII	750883	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.35;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1554,165,0
chrII	750970	.	T	C	1403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=62;Dels=0.00;FS=3.395;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.145;QD=22.63;ReadPosRankSum=1.674;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,58:62:99:1436,156,0
chrII	751226	.	A	C	90.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=54.95;MQ0=0;MQRankSum=0.542;QD=1.60;ReadPosRankSum=2.277;SB=-5.190e+02	GT:AD:DP:GQ:PL	0/1:2,55:57:3:120,0,3
chrII	751317	.	T	C	2993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.887;QD=23.38;ReadPosRankSum=1.678;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:1,126:128:99:3026,333,0
chrII	751854	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=51;Dels=0.00;FS=6.472;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.322;QD=21.06;ReadPosRankSum=2.352;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:2,48:51:99:1107,123,0
chrII	751983	.	T	G	1117	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.95;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1150,129,0
chrII	752106	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.15;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:886,99,0
chrII	752136	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.602;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.787;QD=20.13;ReadPosRankSum=1.669;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1140,126,0
chrII	752153	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.07;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1027,108,0
chrII	752266	.	A	G	732	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=17.85;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:84:765,84,0
chrII	752292	.	A	G	834	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.13;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:867,96,0
chrII	752329	.	T	C	401	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=12.53;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:48:434,48,0
chrII	752333	.	C	T	481	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=12.33;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:54:514,54,0
chrII	752344	.	C	T	537	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=13.10;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:60:570,60,0
chrII	752361	.	G	A	700	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.5944;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=13.46;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:78:733,78,0
chrII	752501	.	G	C	1627	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3860;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.34;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1660,183,0
chrII	752535	.	A	C	1178	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=17.32;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1211,132,0
chrII	752538	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=8.736;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-1.653;QD=18.29;ReadPosRankSum=2.371;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1167,132,0
chrII	752597	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.19;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1338,150,0
chrII	752672	.	T	C	1041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=3.053;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-1.802;QD=17.07;ReadPosRankSum=2.288;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1074,117,0
chrII	752718	.	T	C	1223	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=17.47;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1256,138,0
chrII	752744	.	C	T	1288	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=16.73;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1321,147,0
chrII	752810	.	T	C	1157	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=18.08;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1190,132,0
chrII	752814	.	G	A	1073	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=15.78;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1106,126,0
chrII	752817	.	A	G	1054	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=15.50;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1087,123,0
chrII	752863	.	A	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=14.54;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1167,129,0
chrII	752916	.	G	A	1425	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.59;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1458,159,0
chrII	752933	.	C	T	1571	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.93;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1604,171,0
chrII	753131	.	T	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=20.65;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1685,180,0
chrII	753144	.	C	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4453;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.13;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1533,168,0
chrII	753196	.	C	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=15.88;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1065,117,0
chrII	753198	.	C	T	1053	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=15.95;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1086,117,0
chrII	753285	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.51;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1496,162,0
chrII	753573	.	T	C	1560	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.26;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1593,174,0
chrII	753610	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.66;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1350,147,0
chrII	753721	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.66;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1354,150,0
chrII	753723	.	A	G	1238	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.97;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1271,141,0
chrII	753759	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.00;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1083,114,0
chrII	753909	.	G	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.22;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1570,174,0
chrII	753942	.	C	T	1305	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.39;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1338,144,0
chrII	753990	.	T	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.38;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1436,153,0
chrII	754103	.	A	T	933	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.28;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:966,102,0
chrII	754139	.	G	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.00;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1137,120,0
chrII	754188	.	G	A	927	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=15.98;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:960,108,0
chrII	754197	.	T	C	951	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=17.29;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:984,111,0
chrII	754355	.	G	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.89;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1429,153,0
chrII	754404	.	A	G	899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=5.051;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=0.000;QD=18.73;ReadPosRankSum=1.588;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:932,102,0
chrII	754416	.	A	G	842	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=17.18;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:96:875,96,0
chrII	754436	.	T	C	607	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=13.49;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:69:640,69,0
chrII	754776	.	G	A	2266	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.37;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2299,255,0
chrII	754911	.	A	G	1235	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.05;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1268,141,0
chrII	755157	.	G	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.80;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2017,213,0
chrII	755817	.	T	C	1640	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.78;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1673,180,0
chrII	756042	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.02;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1414,153,0
chrII	756063	.	G	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.19;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1241,138,0
chrII	756114	.	T	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.38;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1215,135,0
chrII	756213	.	G	A	1999	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.04;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2032,225,0
chrII	756267	.	T	C	2595	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.27;SB=-1.608e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2628,288,0
chrII	756363	.	A	G	2180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=4.337;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.003;QD=22.71;ReadPosRankSum=1.659;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2213,237,0
chrII	756533	.	C	A	2213	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.76;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2246,237,0
chrII	757005	.	A	G	1007	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1040,111,0
chrII	757411	.	T	C	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=81;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-2.024;QD=19.49;ReadPosRankSum=2.298;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1612,177,0
chrII	757437	.	G	C	1727	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.81;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1760,192,0
chrII	757513	.	C	T	2414	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.36;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2447,267,0
chrII	757931	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.0331;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=15.13;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1470,156,0
chrII	758421	.	T	G	1667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.2594;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.559;QD=20.58;ReadPosRankSum=1.689;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1700,189,0
chrII	764397	.	C	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.51;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1120,120,0
chrII	764849	.	A	T	2136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.6621;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.924;QD=23.47;ReadPosRankSum=-1.155;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2169,213,0
chrII	767663	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.69;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1254,138,0
chrII	767690	.	A	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=14.75;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1080,114,0
chrII	767691	.	T	C	1003	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=14.33;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1036,114,0
chrII	767899	.	G	A	2562	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.71;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2595,276,0
chrII	767991	.	A	G	2008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=3.731;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.224;QD=23.35;ReadPosRankSum=1.651;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:2041,228,0
chrII	768165	.	T	A	2720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.786;DP=137;Dels=0.00;FS=3.036;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=-0.027;QD=19.85;ReadPosRankSum=1.032;SB=-1.646e+03	GT:AD:DP:GQ:PL	1/1:2,135:137:99:2753,265,0
chrII	768196	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=16.53;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1554,168,0
chrII	768210	.	C	G	1042	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;QD=12.55;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1075,120,0
chrII	768214	.	G	A	984	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=12.62;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1017,111,0
chrII	768260	.	T	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.58;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1345,150,0
chrII	768374	.	G	A	1830	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.03;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1863,198,0
chrII	769465	.	A	G	1454	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.92;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1487,168,0
chrII	769789	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.03;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1392,147,0
chrII	769903	.	G	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.70;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1463,156,0
chrII	770543	.	G	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.51;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1947,210,0
chrII	770755	.	C	T	826	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=17.96;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:859,93,0
chrII	770934	.	C	G	1623	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.29;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1656,180,0
chrII	770977	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=2.866;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.917;QD=18.75;ReadPosRankSum=2.383;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:1439,162,0
chrII	771036	.	A	T	1821	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.7928;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.37;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1854,195,0
chrII	771055	.	C	A	1469	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.08;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1502,168,0
chrII	771086	.	C	T	928	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=14.28;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:961,105,0
chrII	771102	.	A	C	935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=4.122;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=0.559;QD=15.08;ReadPosRankSum=1.676;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:968,108,0
chrII	771181	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1537,165,0
chrII	771772	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.74;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1602,180,0
chrII	772129	.	T	C	942	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.04;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:975,108,0
chrII	772795	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.60;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1125,126,0
chrII	772990	.	G	A	1066	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.92;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1099,120,0
chrII	773074	.	A	G	1080	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.98;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1113,120,0
chrII	773167	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.30;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1128,123,0
chrII	773188	.	G	C	981	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.87;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1014,111,0
chrII	773200	.	G	A	865	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.80;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:99:898,99,0
chrII	773821	.	T	A	768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;DP=58;Dels=0.03;FS=17.879;HaplotypeScore=24.6967;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.161;QD=13.24;ReadPosRankSum=3.293;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:4,52:56:90:801,90,0
chrII	774954	.	T	C	1146	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.92;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1179,132,0
chrII	775070	.	T	C	2112	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8962;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.71;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,99:102:99:2145,237,0
chrII	775233	.	G	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.21;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1518,162,0
chrII	775344	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.7756;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-1.022;QD=18.82;ReadPosRankSum=1.688;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1520,168,0
chrII	775402	.	A	G	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.950;QD=20.21;ReadPosRankSum=1.565;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1286,144,0
chrII	775560	.	T	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.85;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1958,210,0
chrII	775563	.	A	G	1839	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.96;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1872,207,0
chrII	775579	.	C	A	1600	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=17.78;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1633,174,0
chrII	775725	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.53;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1696,183,0
chrII	776545	.	C	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.55;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1492,162,0
chrII	776554	.	C	T	1134	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=18.59;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1167,123,0
chrII	776559	.	C	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=17.82;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1120,120,0
chrII	776768	.	G	T	1833	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=6.0475;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.82;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1866,198,0
chrII	776918	.	T	C	1383	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.95;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1416,156,0
chrII	777071	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.37;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1487,165,0
chrII	777185	.	G	A	2004	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.56;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2037,219,0
chrII	777200	.	G	A	2067	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.97;SB=-1.384e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2100,228,0
chrII	777303	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1396,156,0
chrII	777341	.	G	A	1385	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.98;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1418,150,0
chrII	777883	.	C	T	1554	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.2240;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=13.51;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:1587,171,0
chrII	777939	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.408;DP=161;Dels=0.02;FS=3.094;HaplotypeScore=28.0951;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.158;QD=13.07;ReadPosRankSum=1.401;SB=-1.966e+03	GT:AD:DP:GQ:PL	1/1:1,156:157:99:2137,237,0
chrII	778120	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.806;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.490;QD=20.01;ReadPosRankSum=1.692;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1754,195,0
chrII	778183	.	T	A	2038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.063;QD=23.16;ReadPosRankSum=1.653;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2071,225,0
chrII	778285	.	A	G	1605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.507;QD=20.84;ReadPosRankSum=1.687;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1638,180,0
chrII	778423	.	G	A	2518	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.89;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2551,285,0
chrII	778453	.	T	C	2256	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.93;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2289,252,0
chrII	778507	.	A	G	1272	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.85;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1305,144,0
chrII	778544	.	C	T	828	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.24;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:90:861,90,0
chrII	778734	.	C	T	2473	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.88;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2506,267,0
chrII	778895	.	T	C	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.639;QD=21.97;ReadPosRankSum=1.639;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1659,167,0
chrII	779266	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8598;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1600,171,0
chrII	779386	.	G	C	1767	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1800,198,0
chrII	779530	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.597;DP=57;Dels=0.00;FS=11.750;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.437;QD=19.33;ReadPosRankSum=3.597;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:5,52:57:99:1135,126,0
chrII	779836	.	G	T	613	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;QD=11.57;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:69:646,69,0
chrII	780187	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=22.33;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1976,216,0
chrII	780308	.	T	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.23;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1564,171,0
chrII	780362	.	G	A	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;DP=100;Dels=0.00;FS=11.984;HaplotypeScore=12.2962;MLEAC=1;MLEAF=0.500;MQ=53.69;MQ0=0;MQRankSum=-4.771;QD=0.16;ReadPosRankSum=-4.684;SB=-5.801e+01	GT:AD:DP:GQ:PL	0/1:72,27:100:46:46,0,1047
chrII	780392	.	G	A	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=73.3905;MLEAC=1;MLEAF=0.500;MQ=47.83;MQ0=0;MQRankSum=1.214;QD=0.20;ReadPosRankSum=-3.703;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:68,14:82:46:46,0,425
chrII	780416	.	G	A	178.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.510;DP=82;Dels=0.00;FS=14.342;HaplotypeScore=151.8710;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;MQRankSum=-0.428;QD=2.17;ReadPosRankSum=-0.919;SB=-1.361e+02	GT:AD:DP:GQ:PL	1/1:52,30:82:1:207,1,0
chrII	780488	.	T	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=14.84;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1072,120,0
chrII	780993	.	T	C	1910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.663;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.765;QD=22.21;ReadPosRankSum=1.692;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1943,210,0
chrII	781117	.	A	G	1792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=15.1688;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.617;QD=19.69;ReadPosRankSum=1.694;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1825,198,0
chrII	781232	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1955,207,0
chrII	781709	.	T	C	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.098;QD=19.06;ReadPosRankSum=1.683;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1386,153,0
chrII	781730	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.44;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1394,156,0
chrII	781871	.	T	A	982	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.46;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1015,108,0
chrII	782144	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.23;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1398,156,0
chrII	782369	.	C	T	2846	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.48;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,152:154:99:2879,321,0
chrII	782557	.	T	G	2276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.212;QD=23.22;ReadPosRankSum=1.697;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2309,246,0
chrII	782574	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.07;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1883,204,0
chrII	782581	.	A	T	1938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=5.464;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.003;QD=20.40;ReadPosRankSum=1.659;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1971,207,0
chrII	783142	.	C	A	1772	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.10;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1805,201,0
chrII	783292	.	C	T	2727	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.99;SB=-1.580e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2760,294,0
chrII	783589	.	A	G	4098.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=179;Dels=0.00;FS=2.878;HaplotypeScore=18.4959;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.083;QD=22.89;ReadPosRankSum=2.394;SB=-1.894e+03	GT:AD:DP:GQ:PL	1/1:2,176:179:99:4098,450,0
chrII	783778	.	C	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.68;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1602,171,0
chrII	784270	.	A	C	1864	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.26;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1897,207,0
chrII	784284	.	T	A	1846	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.51;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1879,201,0
chrII	784336	.	T	A	1884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.864;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.550;QD=19.42;ReadPosRankSum=1.696;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1917,207,0
chrII	784573	.	C	T	1757	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6326;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.97;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1790,195,0
chrII	784600	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.92;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1393,147,0
chrII	784794	.	T	G	2185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.513;HaplotypeScore=9.6349;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.830;QD=18.21;ReadPosRankSum=1.703;SB=-1.384e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2218,243,0
chrII	784811	.	A	G	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=107;Dels=0.00;FS=6.317;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-0.035;QD=17.31;ReadPosRankSum=2.379;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:2,104:107:99:1885,207,0
chrII	784884	.	C	T	1398	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=19.15;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1431,150,0
chrII	784895	.	G	C	1248	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.35;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1281,144,0
chrII	784913	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9491;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.49;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1651,177,0
chrII	785017	.	T	G	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.063;QD=21.53;ReadPosRankSum=1.690;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,82:85:99:1863,204,0
chrII	785060	.	G	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.56;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1894,201,0
chrII	785066	.	A	C	1738	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.87;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1771,192,0
chrII	785146	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.091;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.558;QD=22.83;ReadPosRankSum=1.556;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1380,150,0
chrII	785196	.	C	T	1382	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.26;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1415,150,0
chrII	785238	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.71;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1379,147,0
chrII	785248	.	G	A	1211	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.18;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1244,132,0
chrII	785445	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.72;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1437,159,0
chrII	785482	.	T	G	1456	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=67;Dels=0.00;FS=2.627;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=0.800;QD=21.73;ReadPosRankSum=2.863;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:3,63:67:99:1489,168,0
chrII	785586	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.7831;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.00;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1309,138,0
chrII	785614	.	T	A	1058	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=57;Dels=0.04;FS=5.099;HaplotypeScore=11.2424;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-1.480;QD=18.56;ReadPosRankSum=1.606;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1091,117,0
chrII	785730	.	T	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.29;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1230,132,0
chrII	785852	.	G	A	1363	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=17.3977;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.42;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1396,150,0
chrII	785908	.	G	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1388,153,0
chrII	785997	.	T	C	1328	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.51;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1361,147,0
chrII	786053	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.717;QD=20.89;ReadPosRankSum=2.317;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1579,174,0
chrII	786204	.	C	T	2671	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.89;SB=-1.614e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2704,288,0
chrII	786307	.	A	G	2774	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2807,303,0
chrII	786403	.	C	T	3106	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.85;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3139,333,0
chrII	786546	.	T	C	2663	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.01;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2696,300,0
chrII	786589	.	T	G	2489	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.07;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2522,273,0
chrII	786617	.	C	T	3215.99	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=5.4685;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.49;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:3249,345,0
chrII	786902	.	G	T	1936	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.00;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1969,213,0
chrII	787344	.	A	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.76;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1258,138,0
chrII	787463	.	C	T	2839	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.69;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2872,306,0
chrII	787620	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=3.093;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.621;QD=18.26;ReadPosRankSum=1.667;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1001,108,0
chrII	787633	.	A	G	1012	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.09;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1045,114,0
chrII	787803	.	A	C	1904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=98;Dels=0.00;FS=6.160;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.594;QD=19.43;ReadPosRankSum=2.346;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:2,94:98:99:1937,213,0
chrII	787939	.	T	C	1826	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9491;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.54;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1859,198,0
chrII	788189	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.00;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1496,165,0
chrII	788190	.	T	G	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=3.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.332;QD=18.17;ReadPosRankSum=2.323;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1450,162,0
chrII	788369	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.4972;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.27;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1309,144,0
chrII	788377	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.81;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1219,132,0
chrII	788475	.	C	T	1716	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.07;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1749,192,0
chrII	789162	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=4.834;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.247;QD=23.40;ReadPosRankSum=1.683;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1671,183,0
chrII	789274	.	G	C	1522	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1555,171,0
chrII	789369	.	G	A	1590	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1382;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.04;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1623,174,0
chrII	789930	.	G	C	1539	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.52;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1572,174,0
chrII	790329	.	A	T	1167	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.67;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1200,138,0
chrII	790539	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.79;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1595,174,0
chrII	790680	.	T	C	835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.452;QD=18.15;ReadPosRankSum=1.657;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:96:868,96,0
chrII	790744	.	T	C	1042	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.04;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1075,120,0
chrII	790803	.	C	T	2146	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.90;SB=-1.315e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2179,234,0
chrII	790890	.	A	G	2161	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=5.393;HaplotypeScore=8.5634;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.232;QD=23.24;ReadPosRankSum=1.617;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,89:93:99:2194,246,0
chrII	791214	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=5.416;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-1.653;QD=17.40;ReadPosRankSum=1.613;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1547,171,0
chrII	791232	.	G	A	1634	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.69;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1667,177,0
chrII	791380	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1568,171,0
chrII	791816	.	G	A	1774	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.46;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1807,195,0
chrII	791833	.	C	A	2069	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=21.55;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2102,222,0
chrII	791900	.	T	A	2906	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=21.53;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2939,312,0
chrII	791901	.	C	A	2893	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=21.59;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2926,312,0
chrII	791949	.	A	G	2130	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.88;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2163,237,0
chrII	792140	.	C	T	1781	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=23.75;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1814,195,0
chrII	792182	.	C	T	1716	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=24.51;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1749,189,0
chrII	792199	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=23.23;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1566,168,0
chrII	792210	.	C	A	1528	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.81;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1561,171,0
chrII	792247	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.53;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2106,231,0
chrII	792405	.	T	C	2173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.793;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=1.199;QD=23.88;ReadPosRankSum=1.656;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2206,243,0
chrII	792445	.	A	C	2305	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.82;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2338,258,0
chrII	792465	.	C	T	2248	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.3497;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.42;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2281,246,0
chrII	792521	.	T	A	1967	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.99;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2000,213,0
chrII	792968	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.04;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1476,162,0
chrII	792969	.	T	C	1444	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.792;QD=20.06;ReadPosRankSum=1.683;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1477,162,0
chrII	793142	.	T	C	1336	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.55;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1369,150,0
chrII	793181	.	G	A	1728	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.74;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1761,189,0
chrII	793241	.	A	C	900	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.206;QD=15.25;ReadPosRankSum=1.615;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:933,105,0
chrII	793247	.	T	A	988	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=16.20;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1021,111,0
chrII	793276	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8485;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.37;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1405,150,0
chrII	793315	.	T	G	1357	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.39;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1390,150,0
chrII	793380	.	A	G	1263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DP=64;Dels=0.00;FS=3.041;HaplotypeScore=6.3235;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=0.212;QD=19.73;ReadPosRankSum=2.257;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1296,118,0
chrII	793476	.	A	C	1218	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.646;DP=67;Dels=0.00;FS=3.209;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;MQRankSum=-1.060;QD=18.18;ReadPosRankSum=-0.284;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1251,112,0
chrII	793478	.	C	T	1226	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=18.30;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1259,135,0
chrII	793484	.	A	C	1234	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-0.346;QD=17.14;ReadPosRankSum=1.683;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1267,138,0
chrII	793509	.	A	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=16.03;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1155,129,0
chrII	793538	.	G	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.21;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1255,135,0
chrII	793624	.	G	C	838	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.95;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:871,96,0
chrII	793772	.	A	G	1424	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.91;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1457,156,0
chrII	793881	.	C	T	1183	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.3033;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.72;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1216,135,0
chrII	793921	.	C	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.62;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1781,189,0
chrII	794038	.	A	G	1432	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.06;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1465,159,0
chrII	794075	.	C	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.27;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1052,117,0
chrII	794106	.	T	A	1092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.513;QD=20.22;ReadPosRankSum=1.668;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1125,117,0
chrII	794124	.	T	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.43;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1199,126,0
chrII	794237	.	T	C	1522	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.274;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;MQRankSum=0.866;QD=22.38;ReadPosRankSum=1.681;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1555,174,0
chrII	794296	.	G	C	1750	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.89;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1783,195,0
chrII	794317	.	T	C	1834	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.38;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1867,204,0
chrII	794394	.	A	G	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.061;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.215;QD=20.26;ReadPosRankSum=1.692;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1816,201,0
chrII	794615	.	C	A	966	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.8801;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=15.58;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:999,108,0
chrII	794621	.	C	G	856	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=13.81;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:889,99,0
chrII	794626	.	C	T	806	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=13.21;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:90:839,90,0
chrII	794651	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=15.58;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1155,126,0
chrII	794794	.	T	C	1477	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.220;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;MQRankSum=-0.321;QD=19.43;ReadPosRankSum=2.382;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:2,71:76:99:1510,139,0
chrII	794800	.	G	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=21.68;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1572,165,0
chrII	794828	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.32;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1159,129,0
chrII	794844	.	G	A	1247	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.56;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1280,138,0
chrII	794921	.	C	T	1241	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.34;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1274,138,0
chrII	794948	.	G	A	998	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=19.19;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1031,117,0
chrII	794976	.	A	G	819	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.551;DP=52;Dels=0.00;FS=5.591;HaplotypeScore=6.4330;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;MQRankSum=-0.785;QD=15.75;ReadPosRankSum=2.786;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:3,49:52:77:852,77,0
chrII	794993	.	A	G	839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.819;DP=51;Dels=0.00;FS=6.295;HaplotypeScore=2.7490;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=-0.940;QD=16.45;ReadPosRankSum=2.860;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:3,47:51:99:872,99,0
chrII	795012	.	G	A	1038	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=18.87;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1071,114,0
chrII	795035	.	A	G	1200	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.3788;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=21.43;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1233,138,0
chrII	795146	.	G	A	1422	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.47;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1455,162,0
chrII	795161	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.02;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1547,168,0
chrII	795170	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=16.71;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1437,159,0
chrII	795224	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=75;Dels=0.00;FS=3.057;HaplotypeScore=7.9077;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=-1.650;QD=14.44;ReadPosRankSum=2.317;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:1116,126,0
chrII	795354	.	G	C	2010	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.10;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2043,225,0
chrII	795419	.	T	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=17.24;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1378,156,0
chrII	795422	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=17.78;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1438,150,0
chrII	795433	.	T	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=16.58;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1343,150,0
chrII	795692	.	C	A	2604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=3.621;HaplotypeScore=8.2112;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.533;QD=21.00;ReadPosRankSum=1.022;SB=-1.407e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2637,285,0
chrII	795756	.	C	G	2192	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.83;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2225,243,0
chrII	795869	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=85;Dels=0.00;FS=3.060;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.308;QD=20.18;ReadPosRankSum=2.391;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:2,82:85:99:1748,195,0
chrII	796189	.	G	C	1413	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=20.48;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1446,156,0
chrII	796295	.	T	C	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=-1.138;QD=24.00;ReadPosRankSum=1.683;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1713,189,0
chrII	796474	.	T	C	797	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.44;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:830,93,0
chrII	796525	.	T	A	376.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.306;DP=35;Dels=0.00;FS=5.315;HaplotypeScore=17.4294;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.510;QD=10.74;ReadPosRankSum=0.408;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:24:409,24,0
chrII	796540	.	C	T	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.311;DP=75;Dels=0.00;FS=4.932;HaplotypeScore=88.8581;MLEAC=1;MLEAF=0.500;MQ=32.83;MQ0=0;MQRankSum=-0.563;QD=0.15;ReadPosRankSum=2.179;SB=-2.920e+02	GT:AD:DP:GQ:PL	0/1:28,46:75:41:41,0,64
chrII	796593	.	A	T	883	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.15;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:916,99,0
chrII	796619	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=84.2922;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=13.44;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1243,135,0
chrII	796648	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=13.21;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1248,132,0
chrII	796710	.	T	G	1666	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.471;QD=21.92;ReadPosRankSum=2.385;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1699,180,0
chrII	796726	.	T	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.03;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1729,183,0
chrII	796828	.	A	G	1813	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=24.17;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1846,201,0
chrII	797042	.	A	G	1489	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.1170;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=-0.150;QD=18.38;ReadPosRankSum=1.689;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1522,168,0
chrII	797056	.	T	C	1393	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.09;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1426,159,0
chrII	797164	.	C	T	1905	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.65;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1938,213,0
chrII	797248	.	G	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.98;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1671,174,0
chrII	797299	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.95;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1569,174,0
chrII	797326	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.57;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1657,183,0
chrII	797347	.	A	T	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7470;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.996;QD=18.21;ReadPosRankSum=1.559;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1490,138,0
chrII	797413	.	G	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=16.90;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1064,117,0
chrII	797593	.	A	G	795	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=15.29;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:828,90,0
chrII	797599	.	C	G	622	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=13.52;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:72:655,72,0
chrII	798058	.	C	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.5725;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=24.36;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1178,129,0
chrII	798782	.	A	G	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=62;Dels=0.00;FS=3.053;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-2.410;QD=22.58;ReadPosRankSum=2.329;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:2,59:62:99:1433,153,0
chrII	798886	.	C	A	2364	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.2585;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.92;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2397,258,0
chrII	799021	.	C	T	1863	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.3284;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.01;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1896,207,0
chrII	799111	.	C	T	1344	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.33;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1377,147,0
chrII	799214	.	G	A	1934	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.5276;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.94;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1967,213,0
chrII	799230	.	T	C	1763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=5.097;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=-1.304;QD=17.81;ReadPosRankSum=1.661;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,96:99:99:1796,201,0
chrII	799240	.	G	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.47;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1980,213,0
chrII	799511	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=18.98;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1286,144,0
chrII	799523	.	A	G	1105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=-0.687;QD=17.00;ReadPosRankSum=1.677;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:99:1138,126,0
chrII	799566	.	A	T	1265	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=17.82;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1298,141,0
chrII	799572	.	A	G	1146	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=15.49;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1179,135,0
chrII	799718	.	A	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.56;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1413,153,0
chrII	799796	.	A	G	1198	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.62;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1231,132,0
chrII	799806	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9997;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.64;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1375,147,0
chrII	800115	.	C	T	1005	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.38;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1038,111,0
chrII	800195	.	T	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.90;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1407,153,0
chrII	800316	.	C	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.12;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1449,153,0
chrII	800655	.	T	C	1180	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1213,132,0
chrII	800694	.	A	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1533,165,0
chrII	800746	.	T	C	1788	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.29;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1821,201,0
chrII	800859	.	G	A	2173	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3172;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.51;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2206,234,0
chrII	800911	.	A	C	1698	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.87;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1731,189,0
chrII	801524	.	T	C	1244	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=16.0162;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;MQRankSum=1.440;QD=14.81;ReadPosRankSum=1.690;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1277,138,0
chrII	801647	.	A	G	246.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;DP=113;Dels=0.00;FS=112.246;HaplotypeScore=4.1915;MLEAC=1;MLEAF=0.500;MQ=32.85;MQ0=0;MQRankSum=-4.197;QD=2.18;ReadPosRankSum=-0.271;SB=-2.790e+02	GT:AD:DP:GQ:PL	0/1:44,68:113:99:276,0,601
chrII	801650	.	C	A	260.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.134;DP=108;Dels=0.00;FS=98.277;HaplotypeScore=6.5575;MLEAC=1;MLEAF=0.500;MQ=32.24;MQ0=0;MQRankSum=-1.209;QD=2.41;ReadPosRankSum=-1.032;SB=-3.209e+02	GT:AD:DP:GQ:PL	0/1:41,67:108:99:290,0,586
chrII	801661	.	A	T	471.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.630;DP=111;Dels=0.00;FS=65.820;HaplotypeScore=4.9367;MLEAC=1;MLEAF=0.500;MQ=32.54;MQ0=0;MQRankSum=-1.524;QD=4.24;ReadPosRankSum=3.341;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,38:111:99:501,0,541
chrII	801662	.	T	A	446.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610;DP=112;Dels=0.00;FS=69.161;HaplotypeScore=4.9168;MLEAC=1;MLEAF=0.500;MQ=32.88;MQ0=0;MQRankSum=-0.163;QD=3.98;ReadPosRankSum=3.512;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,38:112:99:476,0,573
chrII	801665	.	A	C	465.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=115;Dels=0.00;FS=72.352;HaplotypeScore=3.3394;MLEAC=1;MLEAF=0.500;MQ=33.51;MQ0=0;MQRankSum=-1.167;QD=4.04;ReadPosRankSum=2.559;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,41:115:99:495,0,584
chrII	801676	.	G	T	435.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;DP=119;Dels=0.00;FS=65.802;HaplotypeScore=5.9501;MLEAC=1;MLEAF=0.500;MQ=34.33;MQ0=0;MQRankSum=-0.141;QD=3.66;ReadPosRankSum=1.701;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,43:119:99:465,0,878
chrII	801677	.	A	G	425.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410;DP=117;Dels=0.00;FS=64.808;HaplotypeScore=6.6841;MLEAC=1;MLEAF=0.500;MQ=34.76;MQ0=0;MQRankSum=-1.560;QD=3.63;ReadPosRankSum=1.272;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,42:117:99:455,0,900
chrII	801689	.	A	G	474.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.672;DP=119;Dels=0.00;FS=115.340;HaplotypeScore=10.1517;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=-3.060;QD=3.98;ReadPosRankSum=-1.923;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,46:119:99:504,0,1060
chrII	801690	.	T	G	463.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.418;DP=120;Dels=0.00;FS=119.406;HaplotypeScore=10.1517;MLEAC=1;MLEAF=0.500;MQ=37.57;MQ0=0;MQRankSum=-2.934;QD=3.86;ReadPosRankSum=-1.919;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,46:120:99:493,0,1072
chrII	801693	.	T	C	457.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;DP=127;Dels=0.00;FS=126.026;HaplotypeScore=6.4873;MLEAC=1;MLEAF=0.500;MQ=37.73;MQ0=0;MQRankSum=-2.672;QD=3.60;ReadPosRankSum=-2.568;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:77,50:127:99:487,0,1195
chrII	801699	.	G	A	515.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;DP=132;Dels=0.00;FS=121.971;HaplotypeScore=3.5372;MLEAC=1;MLEAF=0.500;MQ=37.43;MQ0=0;MQRankSum=-4.381;QD=3.90;ReadPosRankSum=-3.640;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,55:132:99:545,0,1291
chrII	801704	.	C	T	431.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.143;DP=137;Dels=0.00;FS=111.384;HaplotypeScore=5.0598;MLEAC=1;MLEAF=0.500;MQ=38.49;MQ0=0;MQRankSum=-5.552;QD=3.15;ReadPosRankSum=-2.883;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,55:137:99:461,0,1306
chrII	801707	.	T	C	405.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000;DP=134;Dels=0.00;FS=119.091;HaplotypeScore=4.8820;MLEAC=1;MLEAF=0.500;MQ=38.67;MQ0=0;MQRankSum=-3.613;QD=3.02;ReadPosRankSum=-2.685;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,53:134:99:435,0,1350
chrII	801710	.	A	T	359.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;DP=134;Dels=0.00;FS=110.959;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=39.20;MQ0=0;MQRankSum=-4.238;QD=2.68;ReadPosRankSum=-2.911;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,53:134:99:389,0,1490
chrII	801713	.	G	A	353.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DP=131;Dels=0.00;FS=112.648;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=39.67;MQ0=0;MQRankSum=-4.117;QD=2.69;ReadPosRankSum=-2.114;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,49:131:99:383,0,1454
chrII	801716	.	A	G	269.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;DP=134;Dels=0.00;FS=95.670;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=39.98;MQ0=0;MQRankSum=-4.335;QD=2.01;ReadPosRankSum=-2.061;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:86,48:134:99:299,0,1486
chrII	801722	.	C	T	179.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;DP=137;Dels=0.00;FS=68.768;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=41.09;MQ0=0;MQRankSum=-5.273;QD=1.31;ReadPosRankSum=-1.648;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,45:137:99:209,0,1708
chrII	801728	.	T	C	92.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DP=139;Dels=0.00;FS=98.851;HaplotypeScore=18.1831;MLEAC=1;MLEAF=0.500;MQ=40.71;MQ0=2;MQRankSum=-5.280;QD=0.66;ReadPosRankSum=-0.459;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:104,35:139:99:122,0,1751
chrII	801729	.	A	C	83.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DP=140;Dels=0.00;FS=97.482;HaplotypeScore=18.9718;MLEAC=1;MLEAF=0.500;MQ=40.64;MQ0=2;MQRankSum=-5.162;QD=0.59;ReadPosRankSum=-0.677;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:104,35:140:99:113,0,1754
chrII	801731	.	G	A	80.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.115;DP=140;Dels=0.00;FS=103.616;HaplotypeScore=20.5492;MLEAC=1;MLEAF=0.500;MQ=40.64;MQ0=2;MQRankSum=-5.180;QD=0.57;ReadPosRankSum=-1.730;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:104,35:140:99:110,0,1869
chrII	801732	.	T	C	87.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DP=139;Dels=0.00;FS=109.588;HaplotypeScore=20.5492;MLEAC=1;MLEAF=0.500;MQ=40.71;MQ0=2;MQRankSum=-5.214;QD=0.63;ReadPosRankSum=-3.048;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:101,35:139:99:117,0,1833
chrII	801738	.	C	A	94.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.870;DP=126;Dels=0.00;FS=135.144;HaplotypeScore=7.1761;MLEAC=1;MLEAF=0.500;MQ=41.52;MQ0=2;MQRankSum=-6.322;QD=0.75;ReadPosRankSum=-8.290;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:88,38:126:99:124,0,1844
chrII	801740	.	C	A	93.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.457;DP=129;Dels=0.00;FS=129.686;HaplotypeScore=10.2761;MLEAC=1;MLEAF=0.500;MQ=41.27;MQ0=2;MQRankSum=-5.373;QD=0.72;ReadPosRankSum=-7.850;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:90,35:129:99:123,0,1843
chrII	801782	.	C	T	1755	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.84;MQ0=2;QD=15.39;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,78:114:99:1788,195,0
chrII	802096	.	T	C	2377	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.85;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2410,261,0
chrII	802200	.	A	C	1867	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.65;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1900,210,0
chrII	802257	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.06;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1398,153,0
chrII	802259	.	G	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=15.14;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1350,150,0
chrII	802656	.	T	C	837	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.20;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:96:870,96,0
chrII	804597	.	A	G	1986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=6.984;HaplotypeScore=4.6223;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.176;QD=21.82;ReadPosRankSum=0.717;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:2,89:91:99:2019,225,0
chrII	804707	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.41;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1400,153,0
chrII	805115	.	C	T	239	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=11;QD=6.13;SB=-5.502e+01	GT:AD:DP:GQ:PL	1/1:0,37:39:30:272,30,0
chrII	805343	.	A	T	1504	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=6;QD=20.60;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1537,165,0
chrII	806256	.	C	A	1198	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=3;QD=19.97;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1231,135,0
chrII	807206	.	A	G	1268	filter	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=17;QD=15.28;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1301,141,0
chrII	807259	.	C	T	718.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.538;DP=145;Dels=0.01;FS=22.028;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=42.72;MQ0=14;MQRankSum=-0.157;QD=4.95;ReadPosRankSum=-0.870;SB=-2.000e+02	GT:AD:DP:GQ:PL	0/1:84,60:144:99:748,0,1333
chrII	808171	.	A	G	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;DP=69;Dels=0.00;FS=32.123;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=52.43;MQ0=7;MQRankSum=-4.676;QD=0.33;ReadPosRankSum=0.959;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:54,15:69:53:53,0,980
chrII	808371	.	T	C	847	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=44;Dels=0.00;FS=2.638;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=1;MQRankSum=-0.975;QD=19.25;ReadPosRankSum=2.333;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:3,40:44:96:880,96,0
chrII	808450	.	G	A	555.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.169;DP=38;Dels=0.00;FS=11.663;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=3;MQRankSum=1.999;QD=14.61;ReadPosRankSum=-1.547;SB=-1.721e+02	GT:AD:DP:GQ:PL	1/1:5,32:38:22:588,22,0
chrII	809220	.	T	C	1145	filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=19;QD=16.36;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1178,129,0
chrII	809320	.	G	C	217.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;DP=95;Dels=0.00;FS=4.239;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=39.96;MQ0=4;MQRankSum=-4.428;QD=2.28;ReadPosRankSum=1.159;SB=-9.201e+01	GT:AD:DP:GQ:PL	0/1:56,38:95:99:247,0,955
chrII	809332	.	C	T	242.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;DP=96;Dels=0.00;FS=3.085;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=37.74;MQ0=4;MQRankSum=-3.879;QD=2.52;ReadPosRankSum=-0.392;SB=-8.201e+01	GT:AD:DP:GQ:PL	0/1:54,38:96:99:272,0,854
chrII	809335	.	C	T	279.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;DP=94;Dels=0.00;FS=0.886;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=37.62;MQ0=6;MQRankSum=-3.478;QD=2.97;ReadPosRankSum=-0.699;SB=-8.701e+01	GT:AD:DP:GQ:PL	0/1:56,38:94:99:309,0,877
chrII	809557	.	C	T	400.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;DP=98;Dels=0.00;FS=6.166;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=35.58;MQ0=3;MQRankSum=-3.435;QD=4.08;ReadPosRankSum=0.606;SB=-2.250e+02	GT:AD:DP:GQ:PL	0/1:63,35:98:99:430,0,1227
chrII	809702	.	C	T	69.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;DP=101;Dels=0.00;FS=37.953;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=46.76;MQ0=6;MQRankSum=-4.811;QD=0.68;ReadPosRankSum=-3.782;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:78,23:101:99:99,0,1642
chrII	810340	.	C	T	132.13	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=4;QD=5.51;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:0,22:24:18:165,18,0
chrII	810344	.	A	G	98.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.826;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=5;MQRankSum=-2.302;QD=4.68;ReadPosRankSum=2.143;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:3,18:21:15:131,15,0
chrII	810420	.	A	G	44.97	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.65;MQ0=7;QD=2.65;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:5,12:17:9:77,9,0
chrII	810461	.	T	C	204.01	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=6;QD=7.56;SB=-2.368e-02	GT:AD:DP:GQ:PL	1/1:0,27:27:27:237,27,0
chrII	810515	.	G	A	252	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.41;MQ0=7;QD=10.08;SB=-1.513e-02	GT:AD:DP:GQ:PL	1/1:3,21:25:30:285,30,0
chrIII	131	.	A	C	56.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=35.5033;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=4;MQRankSum=-0.685;QD=1.56;ReadPosRankSum=-1.158;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,8:36:86:86,0,148
chrIII	160	.	A	C	87.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=28.9511;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=6;MQRankSum=1.041;QD=2.02;ReadPosRankSum=-1.369;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:30,11:42:99:117,0,170
chrIII	233	.	C	A	127.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;DP=77;Dels=0.04;FS=3.863;HaplotypeScore=111.2094;MLEAC=1;MLEAF=0.500;MQ=24.75;MQ0=5;MQRankSum=0.324;QD=1.65;ReadPosRankSum=-1.842;SB=-3.701e+01	GT:AD:DP:GQ:PL	0/1:54,18:74:92:157,0,92
chrIII	310	.	C	A	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;DP=101;Dels=0.03;FS=2.077;HaplotypeScore=124.2532;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=7;MQRankSum=-0.212;QD=0.14;ReadPosRankSum=-1.466;SB=1.24	GT:AD:DP:GQ:PL	1/1:90,7:98:6:45,6,0
chrIII	316	.	C	A	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;DP=101;Dels=0.01;FS=20.112;HaplotypeScore=180.8096;MLEAC=1;MLEAF=0.500;MQ=24.22;MQ0=4;MQRankSum=-1.993;QD=0.12;ReadPosRankSum=-1.600;SB=-3.007e+00	GT:AD:DP:GQ:PL	0/1:83,17:100:42:42,0,111
chrIII	658	.	T	C	72.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606;DP=296;Dels=0.01;FS=11.628;HaplotypeScore=151.9119;MLEAC=1;MLEAF=0.500;MQ=36.33;MQ0=11;MQRankSum=-3.084;QD=0.24;ReadPosRankSum=1.374;SB=-4.901e+01	GT:AD:DP:GQ:PL	0/1:214,79:293:99:102,0,2189
chrIII	951	.	C	T	1103.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.727;DP=272;Dels=0.00;FS=41.639;HaplotypeScore=38.9651;MLEAC=1;MLEAF=0.500;MQ=49.42;MQ0=5;MQRankSum=-12.462;QD=4.06;ReadPosRankSum=-2.492;SB=-2.240e+02	GT:AD:DP:GQ:PL	0/1:175,97:272:99:1133,0,3006
chrIII	1023	.	A	T	25.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=616;Dels=0.00;FS=69.700;HaplotypeScore=448.0151;MLEAC=1;MLEAF=0.500;MQ=44.30;MQ0=4;MQRankSum=-9.426;QD=0.04;ReadPosRankSum=0.840;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:517,99:616:55:55,0,8244
chrIII	1028	.	C	A	327.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=10.413;DP=615;Dels=0.00;FS=140.881;HaplotypeScore=539.2171;MLEAC=1;MLEAF=0.500;MQ=44.35;MQ0=4;MQRankSum=-12.176;QD=0.53;ReadPosRankSum=1.502;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:481,130:615:99:357,0,7907
chrIII	1030	.	A	G	855.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;DP=621;Dels=0.00;FS=95.058;HaplotypeScore=648.0281;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=5;MQRankSum=-9.001;QD=1.38;ReadPosRankSum=1.181;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:502,119:621:99:885,0,7666
chrIII	1034	.	C	T	142.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DP=622;Dels=0.00;FS=115.763;HaplotypeScore=552.7690;MLEAC=1;MLEAF=0.500;MQ=44.21;MQ0=5;MQRankSum=-8.976;QD=0.23;ReadPosRankSum=-0.468;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:506,108:622:99:172,0,7661
chrIII	1040	.	T	C	360.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.253;DP=621;Dels=0.00;FS=30.636;HaplotypeScore=236.4596;MLEAC=1;MLEAF=0.500;MQ=44.54;MQ0=3;MQRankSum=-9.029;QD=0.58;ReadPosRankSum=0.377;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:515,101:621:99:390,0,7669
chrIII	3939	.	C	T	2865	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.9660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.61;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:0,136:139:99:2898,312,0
chrIII	4161	.	C	A	4730.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.624;DP=228;Dels=0.00;FS=10.755;HaplotypeScore=37.0035;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=3.951;QD=20.75;ReadPosRankSum=1.616;SB=-2.177e+03	GT:AD:DP:GQ:PL	1/1:6,216:228:99:4730,430,0
chrIII	4476	.	G	C	123.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;DP=157;Dels=0.00;FS=4.297;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=50.95;MQ0=0;MQRankSum=-5.171;QD=0.78;ReadPosRankSum=-2.589;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:130,26:157:99:153,0,2580
chrIII	4489	.	T	C	3104	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=21.26;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,145:146:99:3137,342,0
chrIII	4490	.	T	C	3142	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=21.23;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3175,351,0
chrIII	4526	.	G	A	495.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;DP=166;Dels=0.00;FS=5.787;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=49.61;MQ0=0;MQRankSum=-9.230;QD=2.98;ReadPosRankSum=1.194;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:109,57:166:99:525,0,2027
chrIII	4528	.	C	T	459.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.756;DP=169;Dels=0.00;FS=4.417;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=50.01;MQ0=0;MQRankSum=-9.357;QD=2.72;ReadPosRankSum=1.398;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:113,56:169:99:489,0,2024
chrIII	4529	.	A	G	423.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.112;DP=171;Dels=0.00;FS=4.403;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=50.14;MQ0=0;MQRankSum=-9.239;QD=2.47;ReadPosRankSum=1.467;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:114,56:171:99:453,0,2236
chrIII	4925	.	T	C	228.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;DP=95;Dels=0.00;FS=40.121;HaplotypeScore=8.2611;MLEAC=1;MLEAF=0.500;MQ=44.21;MQ0=5;MQRankSum=-1.976;QD=2.40;ReadPosRankSum=0.111;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,22:95:99:258,0,1388
chrIII	4951	.	T	C	56.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;DP=87;Dels=0.00;FS=43.311;HaplotypeScore=4.1647;MLEAC=1;MLEAF=0.500;MQ=37.96;MQ0=8;MQRankSum=-2.972;QD=0.64;ReadPosRankSum=-0.845;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,20:87:86:86,0,1287
chrIII	4955	.	T	A	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;DP=86;Dels=0.00;FS=26.361;HaplotypeScore=7.5096;MLEAC=1;MLEAF=0.500;MQ=36.84;MQ0=9;MQRankSum=-3.531;QD=0.38;ReadPosRankSum=0.006;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:68,18:86:63:63,0,1167
chrIII	5235	.	C	T	860.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.270;DP=118;Dels=0.00;FS=1.656;HaplotypeScore=7.0322;MLEAC=1;MLEAF=0.500;MQ=46.69;MQ0=10;MQRankSum=0.882;QD=7.29;ReadPosRankSum=1.882;SB=-1.980e+02	GT:AD:DP:GQ:PL	0/1:64,53:118:99:890,0,1001
chrIII	5266	.	C	T	1061.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;DP=119;Dels=0.00;FS=3.492;HaplotypeScore=6.6564;MLEAC=1;MLEAF=0.500;MQ=50.34;MQ0=2;MQRankSum=-0.682;QD=8.92;ReadPosRankSum=0.555;SB=-2.100e+02	GT:AD:DP:GQ:PL	0/1:57,61:119:99:1091,0,948
chrIII	5590	.	T	C	1077.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;DP=188;Dels=0.00;FS=0.568;HaplotypeScore=11.1195;MLEAC=1;MLEAF=0.500;MQ=43.51;MQ0=12;MQRankSum=-1.119;QD=5.73;ReadPosRankSum=2.140;SB=-6.440e+02	GT:AD:DP:GQ:PL	0/1:97,87:188:99:1107,0,1577
chrIII	5629	.	T	C	814.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;DP=127;Dels=0.00;FS=0.669;HaplotypeScore=5.8677;MLEAC=1;MLEAF=0.500;MQ=48.51;MQ0=2;MQRankSum=-2.735;QD=6.41;ReadPosRankSum=-1.476;SB=-5.080e+02	GT:AD:DP:GQ:PL	0/1:72,55:127:99:844,0,1326
chrIII	5678	.	T	C	213.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=50.18;MQ0=4;MQRankSum=-5.958;QD=2.15;ReadPosRankSum=-0.620;SB=-1.470e+02	GT:AD:DP:GQ:PL	0/1:69,29:99:99:243,0,1402
chrIII	5684	.	G	A	271.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.276;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=50.29;MQ0=3;MQRankSum=-6.347;QD=2.95;ReadPosRankSum=-1.841;SB=-1.240e+02	GT:AD:DP:GQ:PL	0/1:63,29:92:99:301,0,1183
chrIII	5828	.	T	C	108.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;DP=83;Dels=0.00;FS=12.100;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=9;MQRankSum=-2.809;QD=1.30;ReadPosRankSum=-1.758;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,20:83:99:138,0,1043
chrIII	5853	.	A	G	64.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;DP=86;Dels=0.00;FS=1.383;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=6;MQRankSum=-3.195;QD=0.74;ReadPosRankSum=0.352;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:69,16:86:94:94,0,990
chrIII	5904	.	C	T	110.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;DP=95;Dels=0.00;FS=34.009;HaplotypeScore=7.2815;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=11;MQRankSum=-0.227;QD=1.16;ReadPosRankSum=-1.343;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,27:95:99:140,0,948
chrIII	5918	.	C	T	225.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.935;DP=100;Dels=0.00;FS=33.553;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=28.94;MQ0=13;MQRankSum=-0.968;QD=2.25;ReadPosRankSum=-0.448;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,30:100:99:255,0,925
chrIII	5985	.	A	G	247.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;DP=87;Dels=0.00;FS=40.294;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=43.90;MQ0=5;MQRankSum=-5.065;QD=2.84;ReadPosRankSum=0.457;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:58,29:87:99:277,0,872
chrIII	5998	.	C	T	133.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.460;DP=93;Dels=0.00;FS=58.362;HaplotypeScore=9.4874;MLEAC=1;MLEAF=0.500;MQ=47.29;MQ0=3;MQRankSum=-6.119;QD=1.43;ReadPosRankSum=-0.872;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,29:93:99:163,0,1083
chrIII	6008	.	C	G	47.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;DP=88;Dels=0.00;FS=47.934;HaplotypeScore=3.1780;MLEAC=1;MLEAF=0.500;MQ=49.54;MQ0=2;MQRankSum=-6.756;QD=0.53;ReadPosRankSum=-1.837;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:60,27:88:77:77,0,1142
chrIII	6009	.	C	T	61.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.365;DP=86;Dels=0.00;FS=48.086;HaplotypeScore=2.3893;MLEAC=1;MLEAF=0.500;MQ=49.92;MQ0=2;MQRankSum=-6.829;QD=0.71;ReadPosRankSum=-2.035;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,27:86:91:91,0,1116
chrIII	6012	.	G	T	53.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;DP=92;Dels=0.00;FS=47.091;HaplotypeScore=7.1923;MLEAC=1;MLEAF=0.500;MQ=50.64;MQ0=2;MQRankSum=-6.963;QD=0.58;ReadPosRankSum=-0.964;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,27:92:83:83,0,1155
chrIII	6041	.	A	C	1192.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587;DP=99;Dels=0.00;FS=10.823;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=51.25;MQ0=0;MQRankSum=6.193;QD=12.04;ReadPosRankSum=0.565;SB=-5.090e+02	GT:AD:DP:GQ:PL	0/1:29,70:99:99:1222,0,182
chrIII	6050	.	G	C	148.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DP=116;Dels=0.00;FS=1.875;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=50.85;MQ0=0;MQRankSum=-6.452;QD=1.28;ReadPosRankSum=0.164;SB=-3.007e+00	GT:AD:DP:GQ:PL	0/1:82,33:116:99:178,0,1385
chrIII	6075	.	C	T	322.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DP=131;Dels=0.00;FS=5.067;HaplotypeScore=10.2595;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=0;MQRankSum=-6.629;QD=2.46;ReadPosRankSum=0.522;SB=-7.801e+01	GT:AD:DP:GQ:PL	0/1:91,40:131:99:352,0,1458
chrIII	6085	.	C	T	398.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.674;DP=130;Dels=0.00;FS=9.403;HaplotypeScore=11.2542;MLEAC=1;MLEAF=0.500;MQ=49.63;MQ0=0;MQRankSum=-5.120;QD=3.06;ReadPosRankSum=-0.913;SB=-7.801e+01	GT:AD:DP:GQ:PL	0/1:84,46:130:99:428,0,1406
chrIII	6093	.	T	C	379.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.209;DP=126;Dels=0.00;FS=6.519;HaplotypeScore=5.0877;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=0;MQRankSum=-4.675;QD=3.01;ReadPosRankSum=0.164;SB=-7.401e+01	GT:AD:DP:GQ:PL	0/1:82,43:125:99:409,0,1360
chrIII	6098	.	C	T	453.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;DP=123;Dels=0.00;FS=8.086;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=48.57;MQ0=1;MQRankSum=-4.424;QD=3.68;ReadPosRankSum=0.411;SB=-9.001e+01	GT:AD:DP:GQ:PL	0/1:79,43:122:99:483,0,1300
chrIII	6190	.	C	T	220.01	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.15;MQ0=1;QD=12.22;SB=-2.802e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:27:253,27,0
chrIII	6268	.	C	T	124.13	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=5.40;SB=-1.571e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:18:157,18,0
chrIII	6277	.	G	T	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;DP=33;Dels=0.00;FS=19.133;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=0;MQRankSum=-1.778;QD=0.43;ReadPosRankSum=0.992;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,12:33:44:44,0,213
chrIII	6747	.	C	T	864.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;DP=173;Dels=0.00;FS=23.251;HaplotypeScore=10.4430;MLEAC=1;MLEAF=0.500;MQ=33.61;MQ0=20;MQRankSum=-4.463;QD=4.99;ReadPosRankSum=-0.163;SB=-1.280e+02	GT:AD:DP:GQ:PL	0/1:94,78:173:99:894,0,1678
chrIII	6830	.	T	C	94.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;DP=108;Dels=0.00;FS=30.668;HaplotypeScore=5.9209;MLEAC=1;MLEAF=0.500;MQ=21.21;MQ0=45;MQRankSum=-3.276;QD=0.87;ReadPosRankSum=0.671;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,49:108:99:124,0,650
chrIII	6977	.	A	G	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;DP=120;Dels=0.00;FS=38.678;HaplotypeScore=4.2166;MLEAC=1;MLEAF=0.500;MQ=37.88;MQ0=12;MQRankSum=-0.637;QD=0.38;ReadPosRankSum=0.977;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:88,30:120:76:76,0,1550
chrIII	7109	.	T	C	194.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.654;DP=140;Dels=0.00;FS=74.124;HaplotypeScore=13.4076;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=25;MQRankSum=-1.903;QD=1.39;ReadPosRankSum=0.317;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,48:140:99:224,0,1089
chrIII	7546	.	C	T	262.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.395;DP=122;Dels=0.00;FS=0.750;HaplotypeScore=4.8375;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=16;MQRankSum=-1.631;QD=2.15;ReadPosRankSum=1.374;SB=-1.150e+02	GT:AD:DP:GQ:PL	0/1:78,44:122:99:292,0,818
chrIII	7787	.	C	T	439.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.276;DP=81;Dels=0.00;FS=32.006;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=42.06;MQ0=5;MQRankSum=-5.389;QD=5.42;ReadPosRankSum=-0.242;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,30:81:99:469,0,1062
chrIII	7952	.	T	C	294.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;DP=103;Dels=0.00;FS=0.844;HaplotypeScore=6.8878;MLEAC=1;MLEAF=0.500;MQ=40.02;MQ0=7;MQRankSum=-3.604;QD=2.85;ReadPosRankSum=-0.714;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:70,33:103:99:324,0,1128
chrIII	8006	.	T	C	236.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;DP=109;Dels=0.00;FS=8.841;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=46.81;MQ0=9;MQRankSum=-7.863;QD=2.17;ReadPosRankSum=3.093;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:69,40:109:99:266,0,1237
chrIII	8066	.	C	T	314.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;DP=110;Dels=0.00;FS=2.114;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=43.73;MQ0=16;MQRankSum=-6.438;QD=2.85;ReadPosRankSum=-2.354;SB=-8.501e+01	GT:AD:DP:GQ:PL	0/1:70,40:110:99:344,0,1394
chrIII	8226	.	T	A	919.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.574;DP=131;Dels=0.00;FS=9.004;HaplotypeScore=6.8731;MLEAC=1;MLEAF=0.500;MQ=27.79;MQ0=18;MQRankSum=-1.383;QD=7.02;ReadPosRankSum=1.059;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,65:131:99:949,0,904
chrIII	8353	.	C	T	440.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=141;Dels=0.00;FS=7.559;HaplotypeScore=59.5414;MLEAC=1;MLEAF=0.500;MQ=46.28;MQ0=8;MQRankSum=-5.928;QD=3.12;ReadPosRankSum=0.391;SB=-1.480e+02	GT:AD:DP:GQ:PL	0/1:83,52:141:99:470,0,771
chrIII	8495	.	A	G	1893.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DP=217;Dels=0.00;FS=20.977;HaplotypeScore=7.3263;MLEAC=1;MLEAF=0.500;MQ=50.17;MQ0=0;MQRankSum=-0.436;QD=8.72;ReadPosRankSum=3.109;SB=-1.071e+03	GT:AD:DP:GQ:PL	0/1:111,104:217:99:1923,0,1998
chrIII	8528	.	T	C	3781.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.351;DP=189;Dels=0.01;FS=0.000;HaplotypeScore=18.2272;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=5;MQRankSum=-0.552;QD=20.01;ReadPosRankSum=-1.028;SB=-1.744e+03	GT:AD:DP:GQ:PL	1/1:1,186:188:99:3781,398,0
chrIII	8530	.	T	C	1541.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;DP=186;Dels=0.00;FS=27.654;HaplotypeScore=16.6499;MLEAC=1;MLEAF=0.500;MQ=46.69;MQ0=5;MQRankSum=1.147;QD=8.28;ReadPosRankSum=4.019;SB=-4.180e+02	GT:AD:DP:GQ:PL	0/1:96,87:186:99:1571,0,1364
chrIII	8572	.	T	C	1495	filter	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=29.4297;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=10;QD=15.10;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,94:99:99:1528,165,0
chrIII	8584	.	A	T	53.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;DP=74;Dels=0.00;FS=1.339;HaplotypeScore=40.1820;MLEAC=1;MLEAF=0.500;MQ=30.78;MQ0=11;MQRankSum=2.430;QD=0.72;ReadPosRankSum=-2.208;SB=-4.701e+01	GT:AD:DP:GQ:PL	0/1:56,18:74:83:83,0,96
chrIII	8587	.	A	T	144.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;DP=77;Dels=0.00;FS=9.930;HaplotypeScore=43.5994;MLEAC=1;MLEAF=0.500;MQ=31.05;MQ0=11;MQRankSum=-2.086;QD=1.87;ReadPosRankSum=3.872;SB=-1.430e+02	GT:AD:DP:GQ:PL	0/1:21,56:77:72:174,0,72
chrIII	8685	.	C	T	2229	filter	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=21;QD=15.92;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2262,246,0
chrIII	8696	.	G	A	2282	filter	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=22;QD=15.74;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:2315,252,0
chrIII	8743	.	C	T	3662.01	filter	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=13;QD=20.93;SB=-1.912e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:3662,402,0
chrIII	8774	.	T	C	2060.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.555;DP=204;Dels=0.00;FS=8.204;HaplotypeScore=21.0087;MLEAC=1;MLEAF=0.500;MQ=54.66;MQ0=2;MQRankSum=1.422;QD=10.10;ReadPosRankSum=-0.314;SB=-7.840e+02	GT:AD:DP:GQ:PL	0/1:94,104:204:99:2090,0,1682
chrIII	8940	.	T	C	501.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;DP=83;Dels=0.00;FS=9.422;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=39.16;MQ0=8;MQRankSum=-2.479;QD=6.04;ReadPosRankSum=0.558;SB=-2.230e+02	GT:AD:DP:GQ:PL	0/1:41,40:83:99:531,0,649
chrIII	8947	.	T	G	478.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720;DP=81;Dels=0.00;FS=7.402;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=40.65;MQ0=7;MQRankSum=-2.523;QD=5.90;ReadPosRankSum=1.540;SB=-1.760e+02	GT:AD:DP:GQ:PL	0/1:41,39:81:99:508,0,587
chrIII	9219	.	T	C	750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.953;DP=107;Dels=0.00;FS=0.797;HaplotypeScore=33.4627;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;MQRankSum=0.204;QD=7.01;ReadPosRankSum=5.896;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:53,54:107:53:783,53,0
chrIII	9265	.	G	A	1993.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DP=212;Dels=0.00;FS=31.124;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=37.28;MQ0=16;MQRankSum=-2.815;QD=9.40;ReadPosRankSum=0.053;SB=-4.650e+02	GT:AD:DP:GQ:PL	0/1:85,125:212:99:2023,0,1737
chrIII	9392	.	C	T	885.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;DP=65;Dels=0.00;FS=22.493;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.10;MQ0=4;MQRankSum=1.176;QD=13.62;ReadPosRankSum=-1.830;SB=-3.480e+02	GT:AD:DP:GQ:PL	0/1:22,43:65:99:915,0,299
chrIII	9461	.	G	T	504	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=9;QD=14.00;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:60:537,60,0
chrIII	9675	.	C	T	456.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.984;DP=146;Dels=0.00;FS=31.347;HaplotypeScore=9.7564;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=37;MQRankSum=0.618;QD=3.12;ReadPosRankSum=0.832;SB=-5.901e+01	GT:AD:DP:GQ:PL	0/1:82,64:146:99:486,0,1071
chrIII	9682	.	C	T	438.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DP=156;Dels=0.00;FS=23.998;HaplotypeScore=16.8632;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=36;MQRankSum=0.228;QD=2.81;ReadPosRankSum=0.553;SB=-6.401e+01	GT:AD:DP:GQ:PL	0/1:89,67:156:99:468,0,1253
chrIII	9739	.	A	G	2538	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=137;Dels=0.00;FS=4.624;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=28.24;MQ0=21;MQRankSum=-1.702;QD=18.53;ReadPosRankSum=1.672;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,136:137:99:2571,285,0
chrIII	9807	.	A	G	173.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;DP=69;Dels=0.00;FS=3.910;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=16;MQRankSum=1.573;QD=2.51;ReadPosRankSum=-0.009;SB=-8.201e+01	GT:AD:DP:GQ:PL	0/1:42,27:69:99:203,0,417
chrIII	10164	.	T	C	385.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.927;DP=78;Dels=0.00;FS=6.010;HaplotypeScore=6.5846;MLEAC=1;MLEAF=0.500;MQ=21.51;MQ0=16;MQRankSum=1.010;QD=4.94;ReadPosRankSum=-0.386;SB=-2.210e+02	GT:AD:DP:GQ:PL	0/1:42,35:78:99:415,0,407
chrIII	10703	.	C	T	567.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.516;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=14;MQRankSum=0.067;QD=8.46;ReadPosRankSum=-2.106;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:28,39:67:99:597,0,250
chrIII	11056	.	C	T	1220.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.438;DP=101;Dels=0.00;FS=15.377;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=42.00;MQ0=0;MQRankSum=3.231;QD=12.08;ReadPosRankSum=-0.107;SB=-6.460e+02	GT:AD:DP:GQ:PL	0/1:34,66:101:99:1250,0,531
chrIII	11126	.	T	C	1042.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=115;Dels=0.00;FS=30.985;HaplotypeScore=4.9948;MLEAC=1;MLEAF=0.500;MQ=46.27;MQ0=8;MQRankSum=1.348;QD=9.06;ReadPosRankSum=2.181;SB=-4.250e+02	GT:AD:DP:GQ:PL	0/1:53,62:115:99:1072,0,528
chrIII	11578	.	C	T	1022	filter	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=22;QD=13.45;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:11,65:76:99:1055,111,0
chrIII	14069	.	G	C	2894	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=20.52;SB=-1.432e+03	GT:AD:DP:GQ:PL	1/1:0,139:141:99:2927,324,0
chrIII	14139	.	G	T	2372	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=22.81;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2405,261,0
chrIII	14191	.	G	A	1556	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=24.70;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1589,168,0
chrIII	14356	.	A	T	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.983;QD=14.74;ReadPosRankSum=2.398;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1433,165,0
chrIII	14631	.	T	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.20;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1054,111,0
chrIII	17266	.	A	T	1996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.375;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.338;QD=22.68;ReadPosRankSum=1.692;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2029,225,0
chrIII	17635	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=15.61;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1422,150,0
chrIII	18173	.	G	A	1971	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.97;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2004,216,0
chrIII	20735	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1311,141,0
chrIII	23149	.	T	C	2596	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.18;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2629,285,0
chrIII	23754	.	A	G	801	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.65;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:93:834,93,0
chrIII	24059	.	G	A	1924	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8704;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.46;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1957,219,0
chrIII	24173	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.51;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1130,123,0
chrIII	24329	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.96;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1308,147,0
chrIII	24348	.	G	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=17.70;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1343,147,0
chrIII	24352	.	A	G	1239	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=17.45;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1272,141,0
chrIII	24492	.	T	C	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=78;Dels=0.00;FS=4.279;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.254;QD=20.99;ReadPosRankSum=1.686;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,74:78:99:1670,186,0
chrIII	24520	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5805;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=17.77;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1135,129,0
chrIII	24607	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.09;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1491,165,0
chrIII	24833	.	C	G	1176	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.00;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1209,132,0
chrIII	25125	.	C	T	1010	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.04;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1043,111,0
chrIII	25319	.	C	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.2316;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.79;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1972,219,0
chrIII	25355	.	G	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.88;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1893,207,0
chrIII	25463	.	T	G	1046	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.35;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1079,117,0
chrIII	25467	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.37;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1025,114,0
chrIII	25689	.	G	A	1697	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.70;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1730,189,0
chrIII	25808	.	C	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.85;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1451,156,0
chrIII	26192	.	G	A	1108	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.15;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1141,123,0
chrIII	26423	.	A	G	1625	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.26;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1658,186,0
chrIII	26609	.	T	A	1609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=78;Dels=0.00;FS=2.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.429;QD=20.63;ReadPosRankSum=2.702;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1642,180,0
chrIII	26769	.	G	A	2266	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.79;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2299,255,0
chrIII	26798	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=3.278;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.044;QD=18.92;ReadPosRankSum=1.673;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:1,116:118:99:2265,258,0
chrIII	26807	.	T	C	2229	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.45;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2262,243,0
chrIII	26923	.	A	C	2378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.521;QD=20.50;ReadPosRankSum=1.672;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:1,114:116:99:2411,270,0
chrIII	27372	.	T	A	1801	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=3.039;HaplotypeScore=8.4254;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.325;QD=19.58;ReadPosRankSum=2.396;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1834,204,0
chrIII	27420	.	G	A	1897	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.97;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1930,204,0
chrIII	27651	.	C	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=58.8565;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.35;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1368,144,0
chrIII	27717	.	T	C	827	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=14.51;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:96:860,96,0
chrIII	27724	.	G	C	878	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=15.14;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:911,102,0
chrIII	27744	.	A	G	1099	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.91;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1132,126,0
chrIII	28900	.	G	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.97;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1857,207,0
chrIII	30860	.	T	G	2394	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.02;FS=0.000;HaplotypeScore=21.6134;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=22.58;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2427,267,0
chrIII	32816	.	C	T	2764	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7054;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.62;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2797,309,0
chrIII	33569	.	A	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.91;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1725,192,0
chrIII	34008	.	T	C	4987.01	PASS	AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=7.4411;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.46;SB=-1.761e+03	GT:AD:DP:GQ:PL	1/1:0,222:222:99:4987,558,0
chrIII	34309	.	C	T	2294	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.64;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2327,252,0
chrIII	34434	.	T	C	2030	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.93;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2063,228,0
chrIII	35142	.	T	G	1403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.801;DP=67;Dels=0.00;FS=3.947;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.681;QD=20.94;ReadPosRankSum=0.491;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1436,159,0
chrIII	37423	.	G	T	2650	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.1227;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.27;SB=-1.592e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2683,282,0
chrIII	37664	.	A	G	2710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.170;QD=22.21;ReadPosRankSum=1.704;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2743,303,0
chrIII	38664	.	A	G	1903	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.39;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1936,210,0
chrIII	39540	.	C	A	3303.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.02;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3303,360,0
chrIII	40089	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.15;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1340,141,0
chrIII	41123	.	C	T	2791	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.98;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2824,312,0
chrIII	41459	.	C	T	2839	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.4478;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.03;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,133:135:99:2872,309,0
chrIII	43107	.	T	G	1730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.513;QD=21.62;ReadPosRankSum=1.644;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1763,198,0
chrIII	43835	.	T	G	2306	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=19.54;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2339,255,0
chrIII	43844	.	C	A	2470	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=20.58;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2503,273,0
chrIII	43874	.	G	A	2246	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=18.11;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2279,252,0
chrIII	43877	.	G	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=18.35;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2400,255,0
chrIII	44267	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.30;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1657,183,0
chrIII	45708	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.49;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1447,153,0
chrIII	46119	.	G	A	1673	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.23;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1706,183,0
chrIII	46132	.	A	C	1526	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.17;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1559,174,0
chrIII	46258	.	C	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.86;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1913,210,0
chrIII	46446	.	G	A	1936	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=16.69;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:1969,213,0
chrIII	46458	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=3.047;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=0.286;QD=16.41;ReadPosRankSum=2.344;SB=-1.384e+03	GT:AD:DP:GQ:PL	1/1:2,114:116:99:1937,213,0
chrIII	46493	.	T	A	2003	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.643;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.3283;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=1.195;QD=16.97;ReadPosRankSum=0.060;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2036,225,0
chrIII	46562	.	T	A	2117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=6.440;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.141;QD=22.05;ReadPosRankSum=2.373;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:2,94:96:99:2150,228,0
chrIII	46705	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.65;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1364,144,0
chrIII	47045	.	G	T	2169	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2202,240,0
chrIII	49400	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=20.44;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1341,144,0
chrIII	49436	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.28;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1704,189,0
chrIII	49571	.	G	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.69;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1855,198,0
chrIII	49655	.	G	A	1058	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.24;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1091,120,0
chrIII	50099	.	G	A	390	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.60;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:45:423,45,0
chrIII	50253	.	G	C	613	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.03;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,35:36:72:646,72,0
chrIII	50269	.	A	G	598	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.69;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:69:631,69,0
chrIII	50429	.	C	T	472	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,19:20:54:505,54,0
chrIII	50477	.	T	G	70.51	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.75;SB=-4.801e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:12:103,12,0
chrIII	50560	.	C	T	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=17.5163;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=0.46;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,38:39:6:49,6,0
chrIII	50623	.	C	A	366	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.53;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:0,17:17:45:399,45,0
chrIII	50675	.	T	C	486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.171;QD=22.09;ReadPosRankSum=2.227;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:2,20:22:57:519,57,0
chrIII	50770	.	C	T	1285	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.54;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1318,144,0
chrIII	50897	.	G	T	1436	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.81;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1469,162,0
chrIII	51119	.	T	C	977	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1010,111,0
chrIII	51419	.	C	T	1867	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.71;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1900,207,0
chrIII	51491	.	C	T	1948	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.65;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1981,219,0
chrIII	51650	.	G	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.62;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1230,132,0
chrIII	56309	.	C	T	2506	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.10;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2539,276,0
chrIII	56873	.	G	A	617	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=15.05;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:69:650,69,0
chrIII	56979	.	G	A	522	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.73;SB=-6.526e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:60:555,60,0
chrIII	57303	.	A	G	589	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.81;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:72:622,72,0
chrIII	57515	.	A	G	948	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.55;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:981,111,0
chrIII	57542	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.24;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1234,138,0
chrIII	58975	.	A	G	1582	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=20.03;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1615,174,0
chrIII	58978	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.89;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1684,177,0
chrIII	59117	.	C	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.09;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1511,165,0
chrIII	59171	.	A	G	1130	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.93;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1163,129,0
chrIII	59458	.	C	A	2027	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.80;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2060,219,0
chrIII	59775	.	G	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.37;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1336,144,0
chrIII	59925	.	G	A	1436	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1469,153,0
chrIII	60024	.	C	T	1477	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.82;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1510,162,0
chrIII	60058	.	T	C	1604	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.59;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1637,177,0
chrIII	60354	.	C	G	1287	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1320,144,0
chrIII	60463	.	G	A	2217	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.32;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2250,249,0
chrIII	61224	.	T	A	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=92;Dels=0.00;FS=14.276;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.636;QD=17.91;ReadPosRankSum=2.287;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1681,180,0
chrIII	61358	.	G	T	1295	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.43;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1328,153,0
chrIII	61544	.	G	A	1512	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.79;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1545,165,0
chrIII	61630	.	A	G	1833	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4165;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.91;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1866,207,0
chrIII	61646	.	C	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1461;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.69;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1877,207,0
chrIII	62729	.	A	G	522	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=12.14;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:63:555,63,0
chrIII	63611	.	T	C	1174	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.7334;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.577;QD=18.34;ReadPosRankSum=1.512;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1207,132,0
chrIII	63878	.	C	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.38;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1480,162,0
chrIII	64304	.	C	T	710	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.32;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:84:743,84,0
chrIII	67668	.	A	G	1037	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.20;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1070,120,0
chrIII	67820	.	T	C	1155	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.25;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1188,129,0
chrIII	68070	.	T	G	1636	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.11;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1669,183,0
chrIII	68424	.	G	A	3135	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.01;FS=0.000;HaplotypeScore=28.0239;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.36;SB=-1.734e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3168,333,0
chrIII	68443	.	A	G	2955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=3.910;HaplotypeScore=5.5621;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.212;QD=18.94;ReadPosRankSum=1.710;SB=-1.636e+03	GT:AD:DP:GQ:PL	1/1:1,154:156:99:2988,336,0
chrIII	70158	.	G	T	2070	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.26;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2103,231,0
chrIII	70425	.	A	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.04;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1461,159,0
chrIII	71079	.	T	C	926	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:959,108,0
chrIII	72786	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.237;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.910;QD=19.02;ReadPosRankSum=1.674;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1155,129,0
chrIII	73403	.	C	T	3359.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.95;SB=-1.620e+03	GT:AD:DP:GQ:PL	1/1:0,151:153:99:3359,357,0
chrIII	73471	.	G	A	1862	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1895,210,0
chrIII	74074	.	T	C	2109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.275;QD=23.18;ReadPosRankSum=1.694;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2142,237,0
chrIII	74146	.	C	G	1505	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.46;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1538,168,0
chrIII	74327	.	C	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.99;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2006,219,0
chrIII	74346	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=92;Dels=0.00;FS=3.415;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=1.155;QD=19.42;ReadPosRankSum=1.694;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1820,201,0
chrIII	74505	.	C	T	1738	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.92;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1771,195,0
chrIII	74562	.	G	T	3572.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=8.2320;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.35;SB=-1.962e+03	GT:AD:DP:GQ:PL	1/1:0,152:153:99:3572,390,0
chrIII	74673	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=3.854;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.265;QD=19.97;ReadPosRankSum=1.691;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1750,192,0
chrIII	74692	.	C	T	1599	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2074;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.99;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1632,177,0
chrIII	75025	.	T	C	1716	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.597;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.299;QD=19.72;ReadPosRankSum=1.692;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1749,189,0
chrIII	75053	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.02;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1547,168,0
chrIII	75088	.	T	A	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=90;Dels=0.00;FS=4.357;HaplotypeScore=11.6519;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=1.193;QD=15.58;ReadPosRankSum=1.694;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1435,153,0
chrIII	75130	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.95;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1669,186,0
chrIII	75202	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.93;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1656,186,0
chrIII	75264	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.47;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1363,150,0
chrIII	75288	.	C	T	1209	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.52;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1242,129,0
chrIII	75503	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.18;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1537,165,0
chrIII	76131	.	C	T	1787	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.08;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1820,192,0
chrIII	76147	.	T	G	1822	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.80;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1855,207,0
chrIII	76973	.	G	A	970	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.65;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1003,105,0
chrIII	77505	.	A	G	1475	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.07;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1508,168,0
chrIII	78354	.	C	T	1998	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.98;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2031,216,0
chrIII	78862	.	T	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=18.80;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1142,126,0
chrIII	79096	.	G	T	2447	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.8979;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.45;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2480,270,0
chrIII	79170	.	G	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.40;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1910,216,0
chrIII	80173	.	G	A	740	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.47;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:773,84,0
chrIII	84048	.	C	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=19.77;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1674,183,0
chrIII	84070	.	G	A	620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.654;DP=40;Dels=0.00;FS=21.189;HaplotypeScore=8.9029;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;MQRankSum=0.518;QD=15.50;ReadPosRankSum=-3.269;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:4,36:40:72:653,72,0
chrIII	84133	.	A	G	82.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=4;QD=2.29;SB=-2.852e+01	GT:AD:DP:GQ:PL	1/1:4,32:36:12:115,12,0
chrIII	84140	.	T	A	140.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=17.8065;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=4;QD=3.33;SB=-2.307e+01	GT:AD:DP:GQ:PL	1/1:4,37:41:21:173,21,0
chrIII	84143	.	A	G	140.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.459;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.8601;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=4;MQRankSum=-1.459;QD=3.33;ReadPosRankSum=1.641;SB=-2.807e+01	GT:AD:DP:GQ:PL	1/1:5,37:42:21:173,21,0
chrIII	84144	.	A	T	141.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.547;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.8601;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=4;MQRankSum=-0.274;QD=3.36;ReadPosRankSum=1.641;SB=-2.907e+01	GT:AD:DP:GQ:PL	1/1:5,37:42:21:174,21,0
chrIII	84147	.	T	C	134.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=8.8390;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=4;MQRankSum=-1.733;QD=3.12;ReadPosRankSum=1.644;SB=-2.707e+01	GT:AD:DP:GQ:PL	1/1:5,38:43:21:167,21,0
chrIII	84149	.	A	G	140.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.9832;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=4;MQRankSum=0.987;QD=3.26;ReadPosRankSum=2.324;SB=-2.807e+01	GT:AD:DP:GQ:PL	1/1:6,37:43:21:173,21,0
chrIII	84152	.	C	T	156.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=4;QD=3.47;SB=-2.807e+01	GT:AD:DP:GQ:PL	1/1:4,41:45:21:189,21,0
chrIII	84161	.	A	G	240	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=4;QD=4.80;SB=-2.802e+01	GT:AD:DP:GQ:PL	1/1:4,46:50:30:273,30,0
chrIII	84165	.	A	G	276	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=33.6934;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=4;QD=6.00;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:4,42:46:36:309,36,0
chrIII	84166	.	T	C	288	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=33.6934;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=4;QD=6.26;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:4,42:46:36:321,36,0
chrIII	84181	.	G	A	421	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=2;QD=7.65;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:2,53:55:48:454,48,0
chrIII	84190	.	G	A	475	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=1;QD=9.69;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:1,48:49:54:508,54,0
chrIII	84194	.	C	T	465	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.33;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:54:498,54,0
chrIII	84195	.	A	G	454	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.09;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:54:487,54,0
chrIII	84204	.	G	A	454	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.000;DP=44;Dels=0.00;FS=13.424;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=2.282;QD=10.32;ReadPosRankSum=1.718;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:2,42:44:54:487,54,0
chrIII	84205	.	A	G	450	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.057;DP=44;Dels=0.00;FS=13.424;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=0.310;QD=10.23;ReadPosRankSum=1.775;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:2,42:44:54:483,54,0
chrIII	84208	.	A	G	498	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DP=44;Dels=0.00;FS=16.435;HaplotypeScore=3.3887;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=1.654;QD=11.32;ReadPosRankSum=1.496;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:1,43:44:57:531,57,0
chrIII	84209	.	T	A	490	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;DP=44;Dels=0.00;FS=16.435;HaplotypeScore=3.3887;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=1.654;QD=11.14;ReadPosRankSum=1.339;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:1,43:44:57:523,57,0
chrIII	84216	.	G	A	486	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.568;DP=42;Dels=0.00;FS=16.232;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=1.650;QD=11.57;ReadPosRankSum=-1.733;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:1,41:42:57:519,57,0
chrIII	84407	.	G	A	110.26	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=6;QD=3.94;SB=-2.723e-01	GT:AD:DP:GQ:PL	1/1:6,22:28:15:143,15,0
chrIII	84416	.	G	A	361	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=5;QD=8.20;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:5,39:44:42:394,42,0
chrIII	84420	.	C	T	405	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.45;MQ0=5;QD=8.44;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:5,43:48:48:438,48,0
chrIII	84430	.	G	A	438	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=9.73;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:51:471,51,0
chrIII	84431	.	A	G	418	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=9.29;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:51:451,51,0
chrIII	84434	.	A	G	442	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=9.82;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:51:475,51,0
chrIII	84435	.	T	A	431	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=9.58;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:51:464,51,0
chrIII	84442	.	G	A	428	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=9.51;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:51:461,51,0
chrIII	84636	.	C	T	68.51	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=17.13;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:12:101,12,0
chrIII	84735	.	C	T	44.97	filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=14.99;SB=-2.921e+01	GT:AD:DP:GQ:PL	1/1:0,3:3:9:77,9,0
chrIII	87679	.	G	A	71.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.64;MQ0=60;MQRankSum=-0.467;QD=0.99;ReadPosRankSum=1.191;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,17:72:99:101,0,129
chrIII	90484	.	A	G	48.97	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.64;MQ0=48;QD=0.96;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:22,29:51:9:81,9,0
chrIII	90677	.	C	G	100.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.19;MQ0=38;MQRankSum=0.742;QD=2.23;ReadPosRankSum=0.742;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:6,39:45:15:133,15,0
chrIII	90762	.	T	A	66.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=23.96;MQ0=8;MQRankSum=2.637;QD=3.30;ReadPosRankSum=-2.180;SB=-9.273e-03	GT:AD:DP:GQ:PL	0/1:5,15:20:28:96,0,28
chrIII	90763	.	C	T	87.42	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=4;MQRankSum=2.034;QD=5.46;ReadPosRankSum=-0.185;SB=-3.120e-01	GT:AD:DP:GQ:PL	0/1:3,11:16:7:117,0,7
chrIII	91321	.	C	G	1475	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7921;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.79;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1508,165,0
chrIII	91728	.	C	T	917	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=10.19;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:950,105,0
chrIII	91977	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.92;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1923,207,0
chrIII	92106	.	T	C	2674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.295;QD=22.28;ReadPosRankSum=1.703;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2707,297,0
chrIII	92187	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.74;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1881,201,0
chrIII	92193	.	T	C	1730	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.35;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1763,195,0
chrIII	92292	.	G	A	2897	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.18;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2930,318,0
chrIII	92556	.	G	C	2298	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.99;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2331,261,0
chrIII	92575	.	G	A	2155	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5555;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=17.66;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2188,243,0
chrIII	92671	.	C	T	1755	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.04;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1788,189,0
chrIII	92716	.	C	T	1903	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.6013;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.65;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1936,204,0
chrIII	93230	.	T	C	1385	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.98;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1418,156,0
chrIII	93275	.	C	T	1626	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.58;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1659,183,0
chrIII	93455	.	A	G	1343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.640;QD=17.67;ReadPosRankSum=1.594;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1376,156,0
chrIII	93512	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.245;QD=21.30;ReadPosRankSum=1.678;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1396,150,0
chrIII	93620	.	T	C	1235	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.60;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1268,138,0
chrIII	93824	.	A	G	2173	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.51;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2206,240,0
chrIII	94248	.	C	T	1924	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.04;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1957,207,0
chrIII	94376	.	T	C	1435	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1468,165,0
chrIII	94470	.	T	G	1202	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.70;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1235,135,0
chrIII	94554	.	G	A	2605	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.89;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2638,288,0
chrIII	94573	.	G	A	2359	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.82;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2392,264,0
chrIII	94591	.	C	G	2142	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.60;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2175,249,0
chrIII	95029	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.133;QD=19.84;ReadPosRankSum=1.689;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1640,183,0
chrIII	95071	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.688;QD=15.90;ReadPosRankSum=1.644;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1289,144,0
chrIII	95149	.	A	G	1828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=106;Dels=0.00;FS=2.926;HaplotypeScore=12.6253;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.103;QD=17.25;ReadPosRankSum=2.403;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:1861,204,0
chrIII	95527	.	T	C	1012	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.15;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1045,114,0
chrIII	95697	.	C	T	1470	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.14;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1503,162,0
chrIII	95776	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.16;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1451,162,0
chrIII	95815	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.14;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1507,168,0
chrIII	95935	.	A	C	1338	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.58;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1371,150,0
chrIII	95946	.	C	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.12;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1266,138,0
chrIII	95967	.	G	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=16.92;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1387,147,0
chrIII	96055	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.62;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1458,159,0
chrIII	96272	.	A	G	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.322;QD=21.26;ReadPosRankSum=1.695;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:1,92:94:99:2031,225,0
chrIII	96307	.	C	T	1886	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.06;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1919,207,0
chrIII	96959	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1353,144,0
chrIII	97696	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.07;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1297,144,0
chrIII	98308	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.38;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1632,183,0
chrIII	98535	.	C	G	1651	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.64;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1684,180,0
chrIII	98578	.	C	T	1096	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.57;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1129,123,0
chrIII	98617	.	T	C	1001	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.02;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1034,117,0
chrIII	99163	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.26;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1359,156,0
chrIII	99195	.	C	A	1034	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.54;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1067,117,0
chrIII	99209	.	A	G	1038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=4.150;HaplotypeScore=3.5410;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.333;QD=19.96;ReadPosRankSum=1.532;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1071,120,0
chrIII	99392	.	C	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.80;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1128,117,0
chrIII	99481	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.7156;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.06;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1333,150,0
chrIII	99547	.	C	T	1175	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.95;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1208,129,0
chrIII	99700	.	T	C	757	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.46;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:790,90,0
chrIII	100212	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.503;QD=22.75;ReadPosRankSum=2.286;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1398,153,0
chrIII	100244	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.16;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1385,150,0
chrIII	100295	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.933;QD=19.48;ReadPosRankSum=1.679;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1319,150,0
chrIII	100505	.	A	G	873	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.29;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:906,102,0
chrIII	100585	.	A	G	791	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.60;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:90:824,90,0
chrIII	100644	.	A	G	1067	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.78;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,47:49:99:1100,117,0
chrIII	100653	.	T	C	1169	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.48;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1202,135,0
chrIII	100869	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.14;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1537,168,0
chrIII	100927	.	C	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.61;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1903,204,0
chrIII	101152	.	C	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=17.47;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1361,144,0
chrIII	101155	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.29;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1320,144,0
chrIII	101386	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.41;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1082,117,0
chrIII	101527	.	C	A	2044	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.44;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2077,228,0
chrIII	101597	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.50;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1749,198,0
chrIII	101813	.	T	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.12;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1341,153,0
chrIII	101894	.	T	C	361	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.144;DP=52;Dels=0.00;FS=4.813;HaplotypeScore=6.7680;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.259;QD=6.94;ReadPosRankSum=0.442;SB=-6.587e-03	GT:AD:DP:GQ:PL	1/1:8,43:52:51:394,51,0
chrIII	102669	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.33;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1444,159,0
chrIII	103593	.	A	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.71;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1577,180,0
chrIII	105155	.	C	T	1989	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.51;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2022,216,0
chrIII	107157	.	C	T	2090	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.30;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2123,225,0
chrIII	109046	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1197,132,0
chrIII	114986	.	G	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.34;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1619,183,0
chrIII	118719	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.38;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1154,126,0
chrIII	118783	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.69;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1746,195,0
chrIII	119474	.	A	C	2226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;DP=97;Dels=0.00;FS=11.379;HaplotypeScore=14.9581;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.568;QD=22.95;ReadPosRankSum=1.465;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:2,93:97:99:2259,252,0
chrIII	119587	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.632;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.404;QD=23.17;ReadPosRankSum=1.617;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1423,156,0
chrIII	122563	.	C	G	1784	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.27;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1817,198,0
chrIII	128224	.	T	C	849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.433;QD=20.71;ReadPosRankSum=1.646;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:99:882,99,0
chrIII	128355	.	T	C	2326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=2.655;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.451;QD=23.03;ReadPosRankSum=2.401;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:2,99:101:99:2359,261,0
chrIII	130242	.	G	A	1077	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.94;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1110,120,0
chrIII	130372	.	G	A	833	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.3387;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=18.51;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:96:866,96,0
chrIII	130462	.	T	C	981	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.6020;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=14.43;SB=-1.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1014,114,0
chrIII	130940	.	A	G	1707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.9285;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.346;QD=21.34;ReadPosRankSum=1.689;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1740,198,0
chrIII	131983	.	T	C	1715	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.18;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1748,192,0
chrIII	133467	.	C	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.35;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1071,123,0
chrIII	133715	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.76;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1798,198,0
chrIII	135134	.	G	A	2231	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.10;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2264,249,0
chrIII	136789	.	T	C	2536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=124;Dels=0.00;FS=36.979;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.649;QD=20.45;ReadPosRankSum=3.344;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:4,119:124:99:2569,288,0
chrIII	139688	.	T	G	1315	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.55;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1348,150,0
chrIII	139959	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.49;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1365,147,0
chrIII	140656	.	A	G	1402	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.62;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1435,162,0
chrIII	143131	.	T	C	2294	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.71;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2327,261,0
chrIII	144180	.	T	C	2096	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6874;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.03;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2129,231,0
chrIII	144359	.	A	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.46;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1111,120,0
chrIII	144921	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.28;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1708,186,0
chrIII	145017	.	C	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.24;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1612,174,0
chrIII	145735	.	T	C	1263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.590;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.433;QD=19.73;ReadPosRankSum=1.624;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1296,147,0
chrIII	148115	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.42;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2051,216,0
chrIII	148618	.	T	G	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.504;QD=19.59;ReadPosRankSum=1.618;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1816,204,0
chrIII	148649	.	T	C	1940	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.83;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1973,216,0
chrIII	148694	.	A	T	1521	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.89;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1554,171,0
chrIII	148833	.	T	C	1696	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=6.773;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.501;QD=18.43;ReadPosRankSum=2.314;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:2,89:92:99:1729,186,0
chrIII	148835	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.78;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1594,174,0
chrIII	148983	.	A	C	2051	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.48;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2084,231,0
chrIII	148991	.	G	A	1864	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.27;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1897,210,0
chrIII	149102	.	C	T	2167	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2200,234,0
chrIII	149289	.	G	T	1356	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4221;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=14.74;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1389,159,0
chrIII	149858	.	A	C	2178	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=7.634;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.055;QD=24.75;ReadPosRankSum=1.692;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:2211,243,0
chrIII	150097	.	G	T	1741	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1774,186,0
chrIII	152546	.	A	G	2513	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=3.050;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.203;QD=22.24;ReadPosRankSum=1.701;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:1,110:113:99:2546,279,0
chrIII	154005	.	C	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1157,123,0
chrIII	155181	.	C	G	1299	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.6672;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.30;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1332,150,0
chrIII	156868	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.64;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1604,180,0
chrIII	156960	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.284;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.550;QD=18.58;ReadPosRankSum=0.306;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1631,177,0
chrIII	157998	.	C	T	944	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=16.86;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:977,108,0
chrIII	158141	.	C	T	1160	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.31;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1193,126,0
chrIII	158345	.	T	C	899	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.43;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:932,102,0
chrIII	158378	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.86;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1165,129,0
chrIII	158956	.	T	C	1360	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.30;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1393,159,0
chrIII	159689	.	C	T	1543	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1576,168,0
chrIII	159774	.	C	A	1974	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.64;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2007,210,0
chrIII	159894	.	A	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.75;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1376,147,0
chrIII	161749	.	G	T	1618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.592;QD=21.86;ReadPosRankSum=0.983;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1651,177,0
chrIII	162396	.	G	C	357	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.00;SB=-6.785e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:45:390,45,0
chrIII	162640	.	T	G	700	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.231;QD=23.33;ReadPosRankSum=1.617;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,29:30:84:733,84,0
chrIII	162941	.	C	A	1780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.5121;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.888;QD=22.25;ReadPosRankSum=1.066;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1813,204,0
chrIII	163757	.	T	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1176,129,0
chrIII	163810	.	A	G	1319	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.27;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1352,147,0
chrIII	164249	.	G	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.4654;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=15.46;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1316,144,0
chrIII	164277	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=15.77;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1247,138,0
chrIII	165025	.	T	C	1390	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.58;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1423,153,0
chrIII	165034	.	C	T	1363	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=17.70;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1396,153,0
chrIII	167724	.	T	C	1703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=85;Dels=0.00;FS=6.177;HaplotypeScore=13.7638;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.971;QD=20.04;ReadPosRankSum=2.363;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1736,192,0
chrIII	168408	.	G	A	1141	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=21.94;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1174,123,0
chrIII	168464	.	C	T	874	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=62;Dels=0.00;FS=21.909;HaplotypeScore=7.2720;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=13;MQRankSum=3.268;QD=14.10;ReadPosRankSum=1.114;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:11,51:62:96:907,96,0
chrIII	171878	.	T	C	1493	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.18;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1526,168,0
chrIII	175328	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.8372;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.85;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1140,126,0
chrIII	175359	.	T	C	1267	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1257;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.85;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1300,144,0
chrIII	175569	.	T	C	1531	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.19;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1564,174,0
chrIII	177325	.	A	G	1604	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.94;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1637,180,0
chrIII	177399	.	G	A	2572	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.08;SB=-1.341e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2605,288,0
chrIII	178367	.	G	A	1744	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1777,189,0
chrIII	179122	.	C	T	1576	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.51;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1609,171,0
chrIII	180127	.	G	A	1882	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.52;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1915,204,0
chrIII	181211	.	T	C	1542	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.09;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1575,174,0
chrIII	181524	.	C	A	2596	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.0288;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.96;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2629,276,0
chrIII	182576	.	C	T	3120	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.82;SB=-1.442e+03	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3153,336,0
chrIII	183385	.	C	T	2362	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2395,264,0
chrIII	183635	.	C	T	2376	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.85;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2409,264,0
chrIII	183893	.	C	T	1226	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1259,135,0
chrIII	184058	.	C	T	1794	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.61;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1827,198,0
chrIII	184133	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.12;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1374,150,0
chrIII	184376	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1243,135,0
chrIII	184685	.	C	T	1132	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.52;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1165,126,0
chrIII	184808	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.87;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1364,150,0
chrIII	184874	.	C	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.6907;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.20;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1609,177,0
chrIII	185129	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.369;QD=22.52;ReadPosRankSum=1.675;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1407,153,0
chrIII	185221	.	G	A	1160	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.71;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1193,126,0
chrIII	185228	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=18.39;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1173,129,0
chrIII	185310	.	C	G	1700	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.52;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:79:99:1733,192,0
chrIII	185357	.	C	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.11;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1637,177,0
chrIII	185444	.	T	C	1870	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.09;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1903,210,0
chrIII	185468	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.93;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1540,165,0
chrIII	185558	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.20;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1108,126,0
chrIII	185604	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.6094;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.32;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1250,135,0
chrIII	185655	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=17.71;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1255,135,0
chrIII	185657	.	A	G	1114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=0.433;QD=17.41;ReadPosRankSum=1.678;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1147,129,0
chrIII	185682	.	A	G	1497	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.26;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1530,171,0
chrIII	185836	.	A	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.14;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1398,153,0
chrIII	185887	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.62;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1167,126,0
chrIII	186237	.	T	A	1791	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4376;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1824,195,0
chrIII	186666	.	C	T	1732	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.87;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1765,189,0
chrIII	186788	.	G	A	1066	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.19;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1099,120,0
chrIII	186911	.	C	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.45;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1278,144,0
chrIII	187010	.	G	A	1841	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1874,201,0
chrIII	187655	.	G	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.25;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1422,156,0
chrIII	187932	.	G	A	953	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=9.2153;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=16.15;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:986,111,0
chrIII	188102	.	C	T	2492	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.80;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2525,273,0
chrIII	188202	.	C	T	1127	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.21;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1160,123,0
chrIII	188369	.	T	C	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=75;Dels=0.00;FS=4.424;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.636;QD=19.91;ReadPosRankSum=1.684;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,71:75:99:1526,165,0
chrIII	188418	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.85;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1229,141,0
chrIII	188786	.	G	T	882	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.21;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:915,99,0
chrIII	188885	.	A	G	1059	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.06;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1092,120,0
chrIII	188904	.	C	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.64;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1230,132,0
chrIII	188954	.	C	T	1105	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.85;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1138,123,0
chrIII	188979	.	G	A	1079	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=20.36;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1112,120,0
chrIII	188995	.	A	G	784	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=13.75;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:93:817,93,0
chrIII	189025	.	G	A	849	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=14.64;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:96:882,96,0
chrIII	189040	.	A	C	701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=2.861;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=-2.190;QD=12.30;ReadPosRankSum=2.364;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:81:734,81,0
chrIII	189042	.	C	T	693	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=12.37;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:75:726,75,0
chrIII	189052	.	C	G	765	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=13.91;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:798,90,0
chrIII	189260	.	A	T	781	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.69;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:814,90,0
chrIII	189494	.	A	G	1815	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.3483;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.35;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1848,210,0
chrIII	189555	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=3.148;HaplotypeScore=6.7856;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.433;QD=18.20;ReadPosRankSum=1.678;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1216,135,0
chrIII	189830	.	C	A	1703	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.92;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1736,189,0
chrIII	190660	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.347;HaplotypeScore=5.1379;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.698;QD=20.65;ReadPosRankSum=1.681;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1437,159,0
chrIII	190810	.	C	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.52;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1432,156,0
chrIII	191536	.	C	T	2786	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.33;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2819,306,0
chrIII	191965	.	C	T	2183	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.2582;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2216,246,0
chrIII	192293	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.95;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1227,129,0
chrIII	192710	.	A	G	1343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.791;DP=83;Dels=0.00;FS=10.935;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.222;QD=16.18;ReadPosRankSum=1.136;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:3,79:83:99:1376,153,0
chrIII	192715	.	C	A	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.112;QD=17.88;ReadPosRankSum=1.462;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1428,150,0
chrIII	193023	.	A	G	1982	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.05;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2015,225,0
chrIII	193063	.	G	A	2163	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.49;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2196,237,0
chrIII	193107	.	C	A	2666	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.85;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2699,291,0
chrIII	193294	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8778;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.13;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1744,192,0
chrIII	193320	.	T	C	1479	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=76;Dels=0.00;FS=3.056;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.633;QD=19.46;ReadPosRankSum=2.125;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1512,165,0
chrIII	193503	.	A	G	1341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.231;QD=22.35;ReadPosRankSum=1.675;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1374,156,0
chrIII	193675	.	C	T	1464	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.18;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1497,159,0
chrIII	193815	.	C	T	902	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.41;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:935,102,0
chrIII	194051	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.39;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1600,171,0
chrIII	194107	.	C	G	1442	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1475,162,0
chrIII	194217	.	A	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.59;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1091,117,0
chrIII	194218	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.38;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:991,108,0
chrIII	194465	.	T	C	956	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.12;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:989,108,0
chrIII	194544	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.00;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1363,147,0
chrIII	194732	.	C	T	2884	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.68;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2917,324,0
chrIII	195038	.	G	A	2814	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.39;SB=-1.699e+03	GT:AD:DP:GQ:PL	1/1:0,152:153:99:2847,312,0
chrIII	195050	.	T	C	2732	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.46;SB=-1.800e+03	GT:AD:DP:GQ:PL	1/1:0,147:148:99:2765,306,0
chrIII	195140	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.94;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1891,204,0
chrIII	195587	.	A	T	2346	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2379,261,0
chrIII	195779	.	T	C	1525	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.06;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1558,174,0
chrIII	196131	.	C	G	2140	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2173,237,0
chrIII	196646	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.23;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1965,210,0
chrIII	196742	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.8943;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.97;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1363,147,0
chrIII	197217	.	A	C	1779	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.07;MQ0=0;QD=20.69;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1812,204,0
chrIII	197459	.	T	G	2707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.472;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=141.0589;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;MQRankSum=1.690;QD=16.21;ReadPosRankSum=-1.354;SB=-1.905e+03	GT:AD:DP:GQ:PL	1/1:1,164:167:99:2740,303,0
chrIII	198269	.	A	G	2570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.387;QD=21.07;ReadPosRankSum=1.703;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:1,120:122:99:2603,282,0
chrIII	198348	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.97;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1664,183,0
chrIII	198596	.	C	T	1774	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.90;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1807,198,0
chrIII	198944	.	T	A	1438	filter	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.58;MQ0=6;QD=20.25;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:6,65:71:99:1471,162,0
chrIII	199307	.	A	G	346.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=11;MQRankSum=-2.664;QD=5.77;ReadPosRankSum=0.203;SB=-1.180e+02	GT:AD:DP:GQ:PL	0/1:14,46:60:97:376,0,97
chrIII	201041	.	C	A	1139	filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.91;MQ0=35;QD=14.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:25,53:78:99:1172,123,0
chrIII	201081	.	C	T	1804	filter	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=68;QD=12.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:40,100:141:99:1837,198,0
chrIII	201125	.	G	C	2592	filter	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=54;QD=16.10;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:32,128:161:99:2625,285,0
chrIII	201173	.	A	T	2817	filter	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=4;QD=21.18;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:3,130:133:99:2850,306,0
chrIII	201189	.	A	C	2361	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=20.35;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2394,261,0
chrIII	201225	.	T	C	1893	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.400;QD=20.80;ReadPosRankSum=1.694;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1926,216,0
chrIII	201258	.	C	T	1413	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=21.74;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1446,153,0
chrIII	201323	.	A	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=21.15;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1175,132,0
chrIII	201587	.	T	C	1898	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.63;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1931,210,0
chrIII	201942	.	A	G	2102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.709;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.223;QD=20.61;ReadPosRankSum=1.698;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2135,240,0
chrIII	201978	.	A	G	1994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.723;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.487;QD=22.16;ReadPosRankSum=1.693;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:2027,222,0
chrIII	202269	.	C	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.33;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2017,222,0
chrIII	202304	.	T	C	1845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=96;Dels=0.00;FS=6.831;HaplotypeScore=7.4031;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.962;QD=19.22;ReadPosRankSum=2.398;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:2,94:96:99:1878,204,0
chrIII	202551	.	T	A	1866	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=23.32;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1899,207,0
chrIII	202704	.	A	G	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.049;QD=19.43;ReadPosRankSum=1.683;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1393,153,0
chrIII	202932	.	C	A	1074	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.20;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1107,120,0
chrIII	202939	.	C	T	981	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=17.84;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1014,108,0
chrIII	203124	.	T	C	1369	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.43;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1402,153,0
chrIII	203412	.	A	G	1707	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.76;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1740,192,0
chrIII	203463	.	C	G	1974	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.69;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2007,222,0
chrIII	203567	.	T	C	1839	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.16;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1872,207,0
chrIII	203580	.	C	T	1794	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.61;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1827,201,0
chrIII	204174	.	T	C	1313	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.1443;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.89;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1346,147,0
chrIII	204507	.	T	A	1117	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=15.96;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1150,129,0
chrIII	204525	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=15.29;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1103,117,0
chrIII	204530	.	A	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=13.81;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1055,114,0
chrIII	204543	.	G	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=15.79;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1107,123,0
chrIII	204670	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.321;QD=20.04;ReadPosRankSum=-1.476;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1155,126,0
chrIII	204750	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.58;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1371,150,0
chrIII	205619	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8892;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=17.45;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1237,138,0
chrIII	205628	.	C	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;QD=16.49;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1072,120,0
chrIII	205637	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=17.52;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1207,135,0
chrIII	205650	.	C	T	1072	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.62;MQ0=0;QD=16.24;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1105,126,0
chrIII	205742	.	A	T	511	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=17.03;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:60:544,60,0
chrIII	205779	.	T	A	640	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=19.39;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:673,72,0
chrIII	205780	.	G	A	621	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=19.41;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:69:654,69,0
chrIII	205806	.	A	G	658	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.29;MQ0=0;QD=16.05;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:691,75,0
chrIII	205811	.	T	C	663	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=15.79;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:696,75,0
chrIII	205824	.	A	C	613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;MQRankSum=-1.646;QD=15.32;ReadPosRankSum=1.646;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:72:646,72,0
chrIII	205857	.	G	C	521	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=0;QD=15.32;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:63:554,63,0
chrIII	205870	.	A	T	475	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=14.39;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:57:508,57,0
chrIII	205883	.	C	T	312	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=131.4451;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=11.14;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:39:345,39,0
chrIII	206039	.	A	C	501	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.56;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:60:534,60,0
chrIII	206083	.	A	T	613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.037;DP=36;Dels=0.00;FS=7.202;HaplotypeScore=6.5570;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=1.416;QD=17.03;ReadPosRankSum=2.314;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:2,34:36:69:646,69,0
chrIII	207086	.	G	C	1447	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.61;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1480,159,0
chrIII	207528	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=17.23;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1635,174,0
chrIII	207534	.	G	A	1663	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=16.47;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1696,183,0
chrIII	207744	.	C	T	2417	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=23.93;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2450,261,0
chrIII	207999	.	C	G	1709	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=81.6325;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.62;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1742,198,0
chrIII	208072	.	C	G	3022	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.99;SB=-1.883e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3055,336,0
chrIII	208234	.	A	G	846	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.69;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:879,96,0
chrIII	208702	.	G	A	1160	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.12;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1193,129,0
chrIII	208756	.	C	T	1041	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.07;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1074,117,0
chrIII	208822	.	T	C	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.402;QD=20.56;ReadPosRankSum=1.677;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1328,144,0
chrIII	208954	.	T	A	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.777;QD=21.98;ReadPosRankSum=1.673;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1330,147,0
chrIII	209248	.	A	G	693	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;MQRankSum=-0.920;QD=10.83;ReadPosRankSum=1.678;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:81:726,81,0
chrIII	209260	.	C	G	686	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=11.63;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:81:719,81,0
chrIII	209265	.	C	T	699	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=10.59;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:81:732,81,0
chrIII	209281	.	T	C	988	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=12.51;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1021,114,0
chrIII	209380	.	T	A	1028	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=15.12;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1061,114,0
chrIII	209617	.	T	G	857	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=17.14;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:890,99,0
chrIII	209634	.	T	C	770	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=15.10;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:90:803,90,0
chrIII	209648	.	A	G	768	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=14.49;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:90:801,90,0
chrIII	209687	.	G	A	970	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=16.44;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1003,108,0
chrIII	209716	.	A	G	896	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.9355;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.29;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:929,102,0
chrIII	209752	.	A	G	789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=7.324;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;MQRankSum=-1.027;QD=14.35;ReadPosRankSum=1.604;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:93:822,93,0
chrIII	209856	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.83;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1483,168,0
chrIII	209941	.	G	C	1058	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1091,120,0
chrIII	210036	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.98;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1134,126,0
chrIII	210192	.	T	C	1477	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=18.01;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1510,168,0
chrIII	210245	.	T	C	1680	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.50;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1713,186,0
chrIII	210441	.	C	T	592	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=14.44;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:625,66,0
chrIII	210469	.	T	C	700	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=96.4730;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=15.56;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:733,78,0
chrIII	210635	.	A	G	3407.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.7832;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.02;SB=-1.971e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3407,366,0
chrIII	210964	.	C	T	1387	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=17.3789;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=15.58;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1420,153,0
chrIII	211159	.	T	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.97;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1396,153,0
chrIII	211348	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.10;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1141,123,0
chrIII	211997	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=78;Dels=0.00;FS=3.367;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.228;QD=16.36;ReadPosRankSum=1.687;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1309,147,0
chrIII	211998	.	G	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=17.63;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1373,153,0
chrIII	212063	.	G	T	648	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4140;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=9.39;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:75:681,75,0
chrIII	212321	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.85;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1263,135,0
chrIII	212415	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.02;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1154,126,0
chrIII	212528	.	A	T	1214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=58;Dels=0.00;FS=4.694;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.176;QD=20.93;ReadPosRankSum=1.670;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1247,135,0
chrIII	212637	.	T	C	1332	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.59;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1365,147,0
chrIII	212724	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.92;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1195,129,0
chrIII	212942	.	T	C	1738	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.98;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1771,195,0
chrIII	213069	.	T	C	1542	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.1719;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.27;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1575,174,0
chrIII	213146	.	G	A	1210	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.7394;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.91;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1243,144,0
chrIII	213185	.	G	C	1332	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1365,150,0
chrIII	213542	.	T	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.97;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1391,159,0
chrIII	213859	.	G	A	1221	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=17.96;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1254,135,0
chrIII	213879	.	A	G	334.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.381;DP=84;Dels=0.00;FS=35.052;HaplotypeScore=52.1133;MLEAC=1;MLEAF=0.500;MQ=50.02;MQ0=0;MQRankSum=3.814;QD=3.98;ReadPosRankSum=-4.649;SB=-7.101e+01	GT:AD:DP:GQ:PL	0/1:57,26:84:99:364,0,599
chrIII	213895	.	A	G	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=112;Dels=0.00;FS=5.013;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.359;QD=17.47;ReadPosRankSum=1.576;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,110:112:99:1990,225,0
chrIII	214145	.	A	C	1417	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.15;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1450,165,0
chrIII	214310	.	T	C	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=6.152;HaplotypeScore=10.1431;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.695;QD=20.00;ReadPosRankSum=2.401;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:2,99:101:99:2053,234,0
chrIII	214455	.	G	A	2430	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.29;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2463,267,0
chrIII	214574	.	T	C	1483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.577;QD=18.31;ReadPosRankSum=1.647;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1516,171,0
chrIII	214762	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.39;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1541,171,0
chrIII	215005	.	G	A	1603	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.66;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1636,177,0
chrIII	215081	.	C	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.07;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1639,183,0
chrIII	215336	.	A	G	1363	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.83;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1396,153,0
chrIII	215341	.	A	G	1147	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=9.355;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.159;QD=13.65;ReadPosRankSum=2.775;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:4,79:84:99:1180,129,0
chrIII	215344	.	G	A	1278	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.05;FS=0.000;HaplotypeScore=10.6307;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=15.78;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1311,141,0
chrIII	215487	.	G	T	2228	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.82;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2261,246,0
chrIII	215513	.	G	A	2138	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.76;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2171,237,0
chrIII	215848	.	C	T	1827	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.23;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1860,198,0
chrIII	215870	.	G	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.03;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1764,201,0
chrIII	215974	.	C	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.25;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1650,183,0
chrIII	216042	.	T	C	1976	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.71;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2009,222,0
chrIII	216257	.	C	T	2321	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.4707;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.01;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2354,249,0
chrIII	216268	.	T	C	2077	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.2433;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=16.89;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2110,234,0
chrIII	216352	.	T	C	2515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.252;QD=21.31;ReadPosRankSum=1.673;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:1,116:118:99:2548,288,0
chrIII	216424	.	G	C	1650	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.93;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,88:92:99:1683,192,0
chrIII	216488	.	T	G	1988	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.38;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2021,225,0
chrIII	216529	.	A	G	3126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-0.433;QD=21.71;ReadPosRankSum=1.708;SB=-1.506e+03	GT:AD:DP:GQ:PL	1/1:1,143:144:99:3159,342,0
chrIII	216750	.	A	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.63;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1144,126,0
chrIII	216882	.	C	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=13.19;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:1668,183,0
chrIII	217089	.	C	T	1218	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=18.74;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1251,135,0
chrIII	217266	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.76;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1295,138,0
chrIII	217356	.	C	T	1466	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.08;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1499,162,0
chrIII	217443	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.42;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1423,153,0
chrIII	217455	.	T	C	1136	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=15.15;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1169,132,0
chrIII	217467	.	A	C	1227	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=14.78;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1260,141,0
chrIII	218143	.	C	T	961	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.47;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:99:994,105,0
chrIII	218372	.	A	C	1565	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.15;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1598,180,0
chrIII	218655	.	T	C	2021	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.73;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2054,228,0
chrIII	219276	.	T	C	1927	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.18;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1960,216,0
chrIII	219318	.	A	G	1759	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.45;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1792,204,0
chrIII	219386	.	C	T	2283	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.30;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2316,243,0
chrIII	219477	.	G	A	1995	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.68;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2028,219,0
chrIII	219561	.	G	A	1889	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.22;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1922,204,0
chrIII	220080	.	A	G	2985	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.50;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3018,336,0
chrIII	220477	.	T	C	1968	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.88;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2001,219,0
chrIII	220640	.	A	G	1859	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.97;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1892,213,0
chrIII	221162	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.54;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1342,150,0
chrIII	221240	.	C	A	1061	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.65;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1094,117,0
chrIII	221705	.	T	C	1750	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.44;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1783,195,0
chrIII	221720	.	A	G	1485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.163;QD=21.84;ReadPosRankSum=1.681;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1518,168,0
chrIII	221979	.	A	G	1962	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.65;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1995,219,0
chrIII	222056	.	A	G	1732	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.12;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1765,198,0
chrIII	222227	.	C	G	1015	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=16.11;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1048,120,0
chrIII	222524	.	G	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=16.61;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1262,138,0
chrIII	222539	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=15.18;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1232,141,0
chrIII	223233	.	A	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.61;SB=-2.570e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1072,114,0
chrIII	223238	.	G	A	1112	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.65;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1145,123,0
chrIII	223280	.	A	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=16.67;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1533,171,0
chrIII	223523	.	A	T	1313	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1346,147,0
chrIII	223676	.	T	C	961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=72;Dels=0.00;FS=4.523;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.662;QD=13.35;ReadPosRankSum=1.630;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,68:72:99:994,108,0
chrIII	224009	.	A	G	636	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.4918;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.215;QD=14.79;ReadPosRankSum=2.694;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:3,40:43:75:669,75,0
chrIII	224038	.	C	T	553	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=13.17;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:66:586,66,0
chrIII	224288	.	A	G	342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.707;DP=42;Dels=0.00;FS=8.078;HaplotypeScore=14.6273;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=0.166;QD=8.14;ReadPosRankSum=3.855;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:6,36:42:42:375,42,0
chrIII	224310	.	A	G	634.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DP=49;Dels=0.00;FS=2.035;HaplotypeScore=15.2884;MLEAC=1;MLEAF=0.500;MQ=55.62;MQ0=0;MQRankSum=2.290;QD=12.94;ReadPosRankSum=-1.965;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:12,37:49:38:664,0,38
chrIII	224437	.	T	C	296	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.67;SB=-2.800e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:36:329,36,0
chrIII	224492	.	A	G	106.26	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.18;SB=-5.530e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:15:139,15,0
chrIII	224619	.	T	C	122.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=13.57;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:18:155,18,0
chrIII	224620	.	A	G	129.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=0.751;QD=14.35;ReadPosRankSum=0.751;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:1,8:9:18:162,18,0
chrIII	224623	.	T	C	146.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=14.61;SB=-2.206e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:21:179,21,0
chrIII	224644	.	T	C	247	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=17.64;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:30:280,30,0
chrIII	224743	.	A	T	789	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.832;QD=15.78;ReadPosRankSum=1.663;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,49:50:90:822,90,0
chrIII	224789	.	A	G	323.03	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;DP=24;Dels=0.00;FS=16.628;HaplotypeScore=3.5900;MLEAC=1;MLEAF=0.500;MQ=29.78;MQ0=0;MQRankSum=-0.736;QD=13.46;ReadPosRankSum=-1.123;SB=-2.247e+00	GT:AD:DP:GQ:PL	0/1:4,20:24:20:353,0,20
chrIII	224791	.	A	G	368.76	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.350;DP=24;Dels=0.00;FS=24.409;HaplotypeScore=3.5900;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=0.992;QD=15.37;ReadPosRankSum=-2.350;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:2,22:24:6:400,6,0
chrIII	224793	.	A	G	411	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.5478;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=17.12;SB=-4.801e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:51:444,51,0
chrIII	224795	.	A	G	387	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=6.3030;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=15.48;SB=-4.801e+01	GT:AD:DP:GQ:PL	1/1:0,23:25:51:420,51,0
chrIII	224821	.	T	C	674	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.88;MQ0=0;QD=17.28;SB=-4.601e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:84:707,84,0
chrIII	224861	.	T	G	920	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=15.59;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:953,111,0
chrIII	224874	.	T	A	810	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=16.20;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,50:50:96:843,96,0
chrIII	224961	.	C	T	953	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=24.44;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:39:99:986,108,0
chrIII	224994	.	C	T	825	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=20.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:93:858,93,0
chrIII	225006	.	T	C	694	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=17.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:81:727,81,0
chrIII	225088	.	T	C	598	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.93;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:72:631,72,0
chrIII	225116	.	G	C	545	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=16.52;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:63:578,63,0
chrIII	225143	.	G	C	1055	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=16.75;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1088,123,0
chrIII	225150	.	A	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=16.37;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1212,132,0
chrIII	225173	.	G	C	1328	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=17.25;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1361,150,0
chrIII	225256	.	C	G	1474	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=19.92;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1507,168,0
chrIII	225258	.	A	G	1414	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.85;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1447,162,0
chrIII	225343	.	T	A	1011	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=50.5384;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;QD=18.38;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1044,111,0
chrIII	225366	.	C	G	799	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=15.67;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:832,93,0
chrIII	227763	.	C	A	3109	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=25.07;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,122:124:99:3142,336,0
chrIII	227873	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.48;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1487,156,0
chrIII	228130	.	C	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1518;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.37;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1700,186,0
chrIII	228176	.	G	A	1093	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.18;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1126,120,0
chrIII	228291	.	C	A	1010	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.96;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1043,114,0
chrIII	228554	.	T	C	2329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=1.662;QD=23.53;ReadPosRankSum=1.697;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2362,261,0
chrIII	228849	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.17;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1321,144,0
chrIII	229224	.	T	C	1437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.444;QD=19.96;ReadPosRankSum=1.684;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1470,162,0
chrIII	229345	.	T	G	1272	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.220;QD=23.13;ReadPosRankSum=1.606;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1305,141,0
chrIII	230047	.	C	T	973	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1006,105,0
chrIII	230267	.	A	G	1043	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.30;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1076,117,0
chrIII	230329	.	T	C	1223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=4.236;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.199;QD=19.73;ReadPosRankSum=1.675;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1256,138,0
chrIII	230560	.	A	G	1280	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.98;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1313,150,0
chrIII	230773	.	G	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1214,129,0
chrIII	231031	.	C	T	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020;DP=58;Dels=0.00;FS=68.737;HaplotypeScore=32.3026;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=0;MQRankSum=0.254;QD=0.18;ReadPosRankSum=-3.247;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,20:58:40:40,0,172
chrIII	231691	.	C	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.03;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1746,189,0
chrIII	231858	.	G	T	1349	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.41;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1382,150,0
chrIII	231898	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.96;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:976,111,0
chrIII	232537	.	C	T	2336	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.13;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2369,258,0
chrIII	232890	.	C	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.54;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1479,162,0
chrIII	232933	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.95;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1529,171,0
chrIII	233158	.	G	T	2081	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.38;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2114,234,0
chrIII	233281	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.59;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1682,186,0
chrIII	233360	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.54;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1616,174,0
chrIII	233404	.	C	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.72;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1512,165,0
chrIII	233545	.	C	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.63;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1466,162,0
chrIII	233654	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.90;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1488,168,0
chrIII	233673	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=15.47;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1348,150,0
chrIII	233678	.	G	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=16.65;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1415,150,0
chrIII	233727	.	C	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=16.85;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1078,117,0
chrIII	233769	.	C	T	622.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;DP=73;Dels=0.00;FS=0.926;HaplotypeScore=4.9534;MLEAC=1;MLEAF=0.500;MQ=40.80;MQ0=0;MQRankSum=0.506;QD=8.52;ReadPosRankSum=2.377;SB=-4.210e+02	GT:AD:DP:GQ:PL	0/1:25,48:73:42:652,0,42
chrIII	233773	.	A	G	57.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;DP=74;Dels=0.00;FS=0.926;HaplotypeScore=5.0682;MLEAC=1;MLEAF=0.500;MQ=40.67;MQ0=0;MQRankSum=-2.955;QD=0.77;ReadPosRankSum=-1.158;SB=-2.300e+02	GT:AD:DP:GQ:PL	0/1:48,26:74:87:87,0,624
chrIII	233783	.	G	A	540.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.233;DP=79;Dels=0.00;FS=7.546;HaplotypeScore=3.6755;MLEAC=1;MLEAF=0.500;MQ=39.94;MQ0=0;MQRankSum=-2.241;QD=6.84;ReadPosRankSum=1.101;SB=-3.870e+02	GT:AD:DP:GQ:PL	0/1:37,41:79:99:570,0,159
chrIII	233797	.	A	C	722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.644;HaplotypeScore=9.6436;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;MQRankSum=1.476;QD=8.91;ReadPosRankSum=0.748;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:87:755,87,0
chrIII	233803	.	A	G	643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.891;HaplotypeScore=11.2644;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;MQRankSum=1.217;QD=8.04;ReadPosRankSum=2.357;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:75:676,75,0
chrIII	233813	.	A	G	743	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.2909;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;MQRankSum=-0.495;QD=8.85;ReadPosRankSum=1.691;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:84:776,84,0
chrIII	233837	.	T	G	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;DP=78;Dels=0.00;FS=3.776;HaplotypeScore=7.2253;MLEAC=1;MLEAF=0.500;MQ=50.73;MQ0=0;MQRankSum=-2.937;QD=0.15;ReadPosRankSum=-2.098;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:71,7:78:41:41,0,663
chrIII	233910	.	T	C	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.072;QD=21.70;ReadPosRankSum=1.691;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1856,204,0
chrIII	233941	.	C	T	1745	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.77;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1778,198,0
chrIII	234004	.	T	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.52;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1673,183,0
chrIII	234079	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=20.69;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1709,186,0
chrIII	234102	.	T	C	1368	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.27;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1401,159,0
chrIII	234148	.	A	G	1123	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=17.55;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1156,126,0
chrIII	234551	.	A	G	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=2.967;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-0.657;QD=19.53;ReadPosRankSum=2.371;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1244,138,0
chrIII	234600	.	A	G	923	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=16.48;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:956,108,0
chrIII	234608	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=17.89;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:981,108,0
chrIII	234617	.	G	C	821	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=17.85;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:96:854,96,0
chrIII	234626	.	A	G	738	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;MQRankSum=0.472;QD=16.40;ReadPosRankSum=1.654;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:87:771,87,0
chrIII	234679	.	T	A	1016	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=16.93;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1049,117,0
chrIII	234688	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=17.53;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1155,129,0
chrIII	234696	.	T	G	1023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=1.402;QD=16.24;ReadPosRankSum=1.677;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1056,120,0
chrIII	234792	.	G	A	1370	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.46;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1403,150,0
chrIII	234883	.	C	A	883	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.3275;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=12.99;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:916,102,0
chrIII	235033	.	T	C	1039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=0.389;QD=21.20;ReadPosRankSum=1.662;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1072,123,0
chrIII	235062	.	C	T	913	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=17.90;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:946,105,0
chrIII	235065	.	C	T	917	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=17.30;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:950,105,0
chrIII	235070	.	G	T	923	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=17.75;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:956,105,0
chrIII	235138	.	A	G	1746	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.62;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1779,192,0
chrIII	235153	.	G	A	1710	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.00;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1743,195,0
chrIII	235155	.	T	C	1764	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.60;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1797,201,0
chrIII	235472	.	A	G	1322	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.36;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1355,150,0
chrIII	235489	.	T	C	1169	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=16.70;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1202,135,0
chrIII	235561	.	T	A	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=47;Dels=0.00;FS=3.087;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-2.187;QD=22.13;ReadPosRankSum=2.345;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:99:1073,117,0
chrIII	235639	.	T	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=21.08;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1298,141,0
chrIII	235645	.	T	C	1243	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.05;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1276,141,0
chrIII	235669	.	C	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.77;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1159,123,0
chrIII	236387	.	G	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.4936;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1186,126,0
chrIII	236598	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.02;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1483,159,0
chrIII	236636	.	A	G	1427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=3.074;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.468;QD=21.30;ReadPosRankSum=2.375;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1460,162,0
chrIII	237314	.	C	G	2030	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.10;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2063,225,0
chrIII	237321	.	G	A	2015	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.95;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2048,225,0
chrIII	238082	.	T	C	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=113;Dels=0.00;FS=3.171;HaplotypeScore=10.3865;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.323;QD=17.19;ReadPosRankSum=1.701;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:1,109:113:99:1976,219,0
chrIII	239094	.	G	A	1611	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.73;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1644,180,0
chrIII	239515	.	A	G	1364	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.742;QD=21.31;ReadPosRankSum=-0.467;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1397,153,0
chrIII	239672	.	A	G	1769	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.44;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1802,201,0
chrIII	240337	.	C	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.23;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1572,168,0
chrIII	240488	.	G	T	2027	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.2275;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.57;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2060,225,0
chrIII	240922	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.6466;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.40;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1167,129,0
chrIII	241138	.	G	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=16.52;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1685,186,0
chrIII	241156	.	G	A	1828	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=18.65;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1861,204,0
chrIII	241435	.	G	A	866	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.04;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:899,99,0
chrIII	242137	.	G	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=20.09;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1178,126,0
chrIII	242143	.	A	G	970	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=17.96;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1003,108,0
chrIII	242483	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.28;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1826,201,0
chrIII	242507	.	T	G	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=0.520;QD=17.48;ReadPosRankSum=1.429;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1449,156,0
chrIII	242524	.	C	T	1487	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.09;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1520,168,0
chrIII	242591	.	T	A	2426	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.55;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2459,267,0
chrIII	242680	.	C	T	2041	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.18;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2074,228,0
chrIII	242723	.	C	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.56;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,95:98:99:1950,216,0
chrIII	242777	.	T	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4821;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.68;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1568,174,0
chrIII	243500	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.71;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1708,186,0
chrIII	243620	.	T	C	1916	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=3.056;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.013;QD=19.96;ReadPosRankSum=2.346;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:2,93:96:99:1949,216,0
chrIII	243728	.	A	T	1280	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6896;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=15.61;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1313,147,0
chrIII	243734	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0447;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=14.30;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1134,129,0
chrIII	244013	.	A	G	1998	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3770;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.60;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2031,222,0
chrIII	244121	.	G	A	2375	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.86;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2408,261,0
chrIII	244604	.	T	C	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.337;HaplotypeScore=8.2672;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.732;QD=18.84;ReadPosRankSum=1.687;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1465,159,0
chrIII	244643	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0198;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.65;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1747,192,0
chrIII	245054	.	G	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.97;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1522,165,0
chrIII	245066	.	G	A	1548	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.85;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1581,171,0
chrIII	245299	.	C	A	880	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.96;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:96:913,96,0
chrIII	245312	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.83;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1103,120,0
chrIII	246171	.	G	A	1060	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=14.93;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1093,123,0
chrIII	246183	.	C	A	1121	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=17.52;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1154,123,0
chrIII	246581	.	C	T	781	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=16.27;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:814,90,0
chrIII	246789	.	C	A	1100	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=16.42;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1133,129,0
chrIII	246813	.	T	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=16.46;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1202,132,0
chrIII	246818	.	T	A	1061	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5572;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=14.53;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1094,120,0
chrIII	246853	.	G	A	893	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=13.95;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:926,102,0
chrIII	247156	.	C	A	2105	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=24.76;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2138,219,0
chrIII	247472	.	C	T	1137	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.05;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1170,126,0
chrIII	248057	.	A	G	1071	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.38;MQ0=0;QD=25.50;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1104,120,0
chrIII	248549	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.8692;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.61;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1543,168,0
chrIII	249285	.	A	C	1937	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=9.750;HaplotypeScore=4.4479;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;MQRankSum=-1.873;QD=15.13;ReadPosRankSum=2.411;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:2,126:128:99:1970,219,0
chrIII	249286	.	C	T	1883	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=127;Dels=0.00;FS=4.910;HaplotypeScore=3.6592;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;MQRankSum=-1.459;QD=14.83;ReadPosRankSum=1.705;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,126:127:99:1916,216,0
chrIII	249290	.	C	A	1988	SnpCluster	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.84;MQ0=0;QD=15.90;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2021,216,0
chrIII	249499	.	C	G	1036	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.84;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1069,120,0
chrIII	249541	.	C	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.1321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.68;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1191,138,0
chrIII	249898	.	A	G	1871	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.10;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1904,207,0
chrIII	249994	.	C	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.73;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1556,168,0
chrIII	250185	.	T	A	2160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=4.771;HaplotypeScore=9.7758;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.237;QD=20.57;ReadPosRankSum=1.699;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2193,234,0
chrIII	250253	.	T	A	1252	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.003;QD=21.96;ReadPosRankSum=1.672;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1285,138,0
chrIII	251323	.	A	G	954	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=15.39;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:987,108,0
chrIII	251330	.	C	T	1000	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=15.62;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1033,117,0
chrIII	251657	.	T	C	884	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.68;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:917,99,0
chrIII	251893	.	T	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.75;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1186,129,0
chrIII	251945	.	G	A	952	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.96;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:985,111,0
chrIII	252008	.	A	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.4828;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.76;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1120,123,0
chrIII	252269	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.67;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1390,153,0
chrIII	252377	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.86;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1462,159,0
chrIII	253084	.	G	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=15.80;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1123,120,0
chrIII	253483	.	G	C	844	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.23;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:96:877,96,0
chrIII	253507	.	T	A	997	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=16.90;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1030,114,0
chrIII	253696	.	G	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.99;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1514,168,0
chrIII	254715	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.04;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1436,159,0
chrIII	254947	.	G	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.06;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1549,162,0
chrIII	254961	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.16;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1451,165,0
chrIII	256416	.	A	G	1848	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.297;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.489;QD=23.69;ReadPosRankSum=1.688;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1881,210,0
chrIII	257131	.	G	A	1609	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.74;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1642,174,0
chrIII	257205	.	A	C	1625	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.380;QD=19.82;ReadPosRankSum=1.690;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1658,180,0
chrIII	257455	.	T	C	2442	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.94;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2475,273,0
chrIII	257484	.	C	T	2451	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.49;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2484,270,0
chrIII	257531	.	C	G	2259	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.54;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2292,255,0
chrIII	257592	.	T	G	1973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=98;Dels=0.00;FS=4.592;HaplotypeScore=8.1655;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.711;QD=20.13;ReadPosRankSum=1.696;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,94:98:99:2006,219,0
chrIII	257960	.	T	C	1748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.461;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.518;QD=21.58;ReadPosRankSum=1.689;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1781,204,0
chrIII	258066	.	T	C	1710	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.65;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1743,195,0
chrIII	258276	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.27;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1748,189,0
chrIII	258306	.	G	C	1716	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.43;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1749,195,0
chrIII	258343	.	G	C	1651	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4725;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.65;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,80:84:99:1684,186,0
chrIII	258477	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.49;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1365,144,0
chrIII	258579	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=17.38;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1215,138,0
chrIII	258780	.	T	G	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-0.274;QD=18.25;ReadPosRankSum=1.672;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1073,117,0
chrIII	258781	.	T	C	989	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.674;DP=60;Dels=0.00;FS=5.621;HaplotypeScore=3.3533;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-2.053;QD=16.48;ReadPosRankSum=2.881;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:3,56:60:99:1022,111,0
chrIII	258847	.	A	G	990	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.68;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1023,111,0
chrIII	258915	.	G	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.64;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1230,135,0
chrIII	259351	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.62;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1468,156,0
chrIII	259489	.	A	G	570	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=17.27;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:66:603,66,0
chrIII	259496	.	T	C	582	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.12;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:69:615,69,0
chrIII	259724	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=23.74;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1742,192,0
chrIII	259975	.	G	A	963	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7206;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=10.94;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,88:88:99:996,108,0
chrIII	260010	.	A	G	390	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=6.96;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:48:423,48,0
chrIII	260698	.	A	C	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.000;QD=21.53;ReadPosRankSum=1.675;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1325,147,0
chrIII	261312	.	G	A	718	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.51;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:751,84,0
chrIII	261331	.	A	G	655	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=15.60;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:688,78,0
chrIII	261571	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=23.34;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1410,150,0
chrIII	262105	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.34;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1155,123,0
chrIII	262154	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.89;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1249,138,0
chrIII	262264	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.214;QD=18.42;ReadPosRankSum=1.590;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1378,153,0
chrIII	262830	.	T	G	1563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.509;QD=22.65;ReadPosRankSum=1.630;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1596,174,0
chrIII	263029	.	A	G	2300	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.96;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2333,252,0
chrIII	263282	.	C	T	2783	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.8917;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.24;SB=-1.460e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2816,318,0
chrIII	263790	.	A	C	775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=0.374;QD=15.20;ReadPosRankSum=1.664;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:87:808,87,0
chrIII	264135	.	A	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.29;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1477,156,0
chrIII	264282	.	C	T	787	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=13.81;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:90:820,90,0
chrIII	264441	.	A	G	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.377;QD=20.35;ReadPosRankSum=1.694;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1905,210,0
chrIII	264610	.	T	C	2318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.587;QD=18.85;ReadPosRankSum=1.703;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,120:123:99:2351,258,0
chrIII	264634	.	G	A	2733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.502;QD=19.80;ReadPosRankSum=-1.004;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,137:138:99:2766,272,0
chrIII	264642	.	T	C	2453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;MQRankSum=-0.704;QD=19.02;ReadPosRankSum=1.678;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,127:129:99:2486,273,0
chrIII	264655	.	T	C	2164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.000;QD=17.45;ReadPosRankSum=1.676;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2197,243,0
chrIII	264887	.	T	C	1867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=88;Dels=0.00;FS=10.305;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.779;QD=21.22;ReadPosRankSum=2.826;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:3,84:88:99:1900,210,0
chrIII	265045	.	C	T	2163	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.21;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2196,240,0
chrIII	265059	.	T	C	1981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.722;QD=20.64;ReadPosRankSum=1.588;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2014,222,0
chrIII	265091	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.45;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1414,159,0
chrIII	265240	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.18;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1486,165,0
chrIII	266048	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.07;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1625,177,0
chrIII	266282	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=16.36;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1162,126,0
chrIII	266283	.	G	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.89;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1145,126,0
chrIII	266399	.	C	G	1088	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.27;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1121,123,0
chrIII	266468	.	T	A	943	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.96;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:976,108,0
chrIII	266603	.	A	G	1022	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.32;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1055,120,0
chrIII	266670	.	C	T	1311	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.72;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1344,141,0
chrIII	266699	.	T	C	1213	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.22;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1246,141,0
chrIII	266863	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.47;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1773,195,0
chrIII	267008	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.76;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1646,177,0
chrIII	267157	.	A	G	1630	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=22.03;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1663,186,0
chrIII	267162	.	G	A	1638	SnpCluster	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=21.55;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1671,174,0
chrIII	267166	.	T	C	1516	SnpCluster	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.95;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1549,171,0
chrIII	267253	.	A	G	2058	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1077;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.222;QD=21.44;ReadPosRankSum=1.696;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2091,234,0
chrIII	267271	.	A	C	2322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=110;Dels=0.00;FS=2.907;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.085;QD=21.11;ReadPosRankSum=2.405;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:2,108:110:99:2355,261,0
chrIII	267339	.	A	G	2568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.433;QD=22.53;ReadPosRankSum=1.701;SB=-1.409e+03	GT:AD:DP:GQ:PL	1/1:1,111:114:99:2601,291,0
chrIII	267542	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.41;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1227,132,0
chrIII	267603	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.64;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1170,132,0
chrIII	267682	.	T	C	1267	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.36;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1300,141,0
chrIII	267793	.	C	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.64;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1560,180,0
chrIII	267916	.	G	T	658	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=14.62;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:691,75,0
chrIII	268012	.	T	A	976	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.8743;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.92;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1009,108,0
chrIII	268066	.	C	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.59;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1186,132,0
chrIII	268449	.	G	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=20.54;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1882,207,0
chrIII	268451	.	G	A	1914	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=21.03;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1947,207,0
chrIII	268647	.	C	T	96.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;DP=75;Dels=0.00;FS=35.386;HaplotypeScore=9.8037;MLEAC=1;MLEAF=0.500;MQ=38.31;MQ0=3;MQRankSum=-3.102;QD=1.28;ReadPosRankSum=-1.255;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:56,19:75:99:126,0,996
chrIII	268696	.	T	C	763.04	filter	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.2274;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=37;QD=7.79;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,91:98:87:796,87,0
chrIII	268711	.	C	T	199.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;DP=109;Dels=0.00;FS=21.566;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=44;MQRankSum=0.309;QD=1.83;ReadPosRankSum=0.939;SB=-7.601e+01	GT:AD:DP:GQ:PL	0/1:62,47:109:99:229,0,398
chrIII	268753	.	G	A	1257	filter	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=45;QD=9.52;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,132:132:99:1290,141,0
chrIII	268780	.	G	A	544.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;DP=151;Dels=0.00;FS=60.123;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=27.88;MQ0=26;MQRankSum=0.087;QD=3.60;ReadPosRankSum=-1.612;SB=-1.530e+02	GT:AD:DP:GQ:PL	0/1:88,63:151:99:574,0,605
chrIII	268796	.	A	G	541.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.598;DP=148;Dels=0.00;FS=51.410;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=30.11;MQ0=18;MQRankSum=-0.891;QD=3.66;ReadPosRankSum=0.590;SB=-2.300e+02	GT:AD:DP:GQ:PL	0/1:69,79:148:99:571,0,671
chrIII	268831	.	C	A	587.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.791;DP=125;Dels=0.00;FS=64.796;HaplotypeScore=6.0249;MLEAC=1;MLEAF=0.500;MQ=36.75;MQ0=1;MQRankSum=-5.627;QD=4.70;ReadPosRankSum=-2.939;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:57,67:125:99:617,0,770
chrIII	268850	.	G	A	373.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.948;DP=99;Dels=0.00;FS=93.365;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=38.64;MQ0=0;MQRankSum=-6.779;QD=3.77;ReadPosRankSum=-0.639;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:60,39:99:99:403,0,763
chrIII	268852	.	C	T	266.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DP=100;Dels=0.00;FS=94.301;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=38.19;MQ0=0;MQRankSum=-7.162;QD=2.66;ReadPosRankSum=-0.082;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,38:100:99:296,0,787
chrIII	268863	.	T	C	270.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.129;DP=98;Dels=0.00;FS=100.226;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=37.64;MQ0=0;MQRankSum=-3.897;QD=2.76;ReadPosRankSum=1.363;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,35:98:99:300,0,702
chrIII	268864	.	T	G	1166	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=37.34;MQ0=0;QD=12.02;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1199,138,0
chrIII	268891	.	T	C	247.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;DP=88;Dels=0.00;FS=206.008;HaplotypeScore=59.6864;MLEAC=1;MLEAF=0.500;MQ=33.99;MQ0=0;MQRankSum=1.973;QD=2.81;ReadPosRankSum=1.420;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:40,48:88:99:277,0,339
chrIII	268913	.	T	C	380	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.184;DP=81;Dels=0.00;FS=166.056;HaplotypeScore=93.5188;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;MQRankSum=1.545;QD=4.69;ReadPosRankSum=0.213;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:39,42:81:45:413,45,0
chrIII	268923	.	G	C	466	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=5.42;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:57:499,57,0
chrIII	268932	.	C	T	324.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;DP=84;Dels=0.00;FS=104.912;HaplotypeScore=4.0159;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=0;MQRankSum=0.465;QD=3.86;ReadPosRankSum=3.329;SB=-4.822e+01	GT:AD:DP:GQ:PL	0/1:41,43:84:99:354,0,164
chrIII	268960	.	T	C	62.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;DP=84;Dels=0.00;FS=52.670;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=1;MQRankSum=-0.270;QD=0.74;ReadPosRankSum=-0.644;SB=-1.080e+02	GT:AD:DP:GQ:PL	0/1:45,39:84:92:92,0,476
chrIII	268966	.	C	T	841	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.98;MQ0=1;QD=10.01;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:93:874,93,0
chrIII	268974	.	C	T	450.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;DP=82;Dels=0.00;FS=40.234;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=27.64;MQ0=2;MQRankSum=1.440;QD=5.49;ReadPosRankSum=-0.342;SB=-1.470e+02	GT:AD:DP:GQ:PL	0/1:39,43:82:99:480,0,122
chrIII	268984	.	G	A	137.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;DP=84;Dels=0.00;FS=43.501;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=26.57;MQ0=5;MQRankSum=-1.601;QD=1.63;ReadPosRankSum=1.182;SB=-1.250e+02	GT:AD:DP:GQ:PL	0/1:44,39:84:99:167,0,462
chrIII	269023	.	T	C,G	915.01	filter	AC=1,1;AF=0.500,0.500;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.68;MQ0=11;QD=11.30;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/2:0,33,46:81:99:975,568,517,389,0,311
chrIII	269059	.	T	C	659.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;DP=104;Dels=0.00;FS=59.156;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=20.82;MQ0=34;MQRankSum=3.236;QD=6.34;ReadPosRankSum=1.757;SB=-2.510e+02	GT:AD:DP:GQ:PL	0/1:36,68:104:79:689,0,79
chrIII	269080	.	G	A	723	filter	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=18.40;MQ0=48;QD=6.23;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:84:756,84,0
chrIII	269108	.	G	A	666	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=110;Dels=0.00;FS=35.752;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=22.28;MQ0=50;MQRankSum=3.705;QD=6.05;ReadPosRankSum=-0.970;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:40,70:110:54:699,54,0
chrIII	269158	.	C	A	1271	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=108;Dels=0.00;FS=11.545;HaplotypeScore=6.7350;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=16;MQRankSum=3.290;QD=11.77;ReadPosRankSum=1.533;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:14,94:108:99:1304,141,0
chrIII	269168	.	G	A	1428	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=107;Dels=0.00;FS=8.381;HaplotypeScore=6.1764;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=8;MQRankSum=3.065;QD=13.35;ReadPosRankSum=2.372;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:11,96:107:99:1461,159,0
chrIII	269224	.	A	G	1563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=0.171;QD=16.81;ReadPosRankSum=1.694;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,90:93:99:1596,177,0
chrIII	269353	.	G	A	1302	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=18.87;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1335,150,0
chrIII	269359	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;MQRankSum=-1.049;QD=16.23;ReadPosRankSum=1.537;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:99:1218,138,0
chrIII	269369	.	T	A	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;MQRankSum=-1.588;QD=16.71;ReadPosRankSum=1.684;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1236,135,0
chrIII	269395	.	T	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;QD=15.45;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1161,129,0
chrIII	269495	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=74;Dels=0.00;FS=6.464;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.886;QD=18.66;ReadPosRankSum=2.381;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:2,70:74:99:1414,156,0
chrIII	269719	.	G	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=18.69;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1491,168,0
chrIII	269744	.	T	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.1977;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.54;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1674,177,0
chrIII	269842	.	T	C	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.378;QD=21.40;ReadPosRankSum=1.614;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1938,216,0
chrIII	269873	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=0.444;QD=18.26;ReadPosRankSum=1.688;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1457,162,0
chrIII	269874	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.39;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1431,156,0
chrIII	269921	.	G	A	895	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=13.98;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:928,105,0
chrIII	269952	.	T	C	944	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=16.28;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:977,108,0
chrIII	270018	.	C	T	1469	SnpCluster	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.9221;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=11.94;SB=-1.568e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:1502,159,0
chrIII	270023	.	G	A	383.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.2429;MLEAC=1;MLEAF=0.500;MQ=45.58;MQ0=0;MQRankSum=2.117;QD=3.19;ReadPosRankSum=-2.491;SB=-5.630e+02	GT:AD:DP:GQ:PL	0/1:64,56:120:99:413,0,772
chrIII	270027	.	C	T	709.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7569;MLEAC=1;MLEAF=0.500;MQ=46.22;MQ0=0;MQRankSum=-2.062;QD=5.86;ReadPosRankSum=2.451;SB=-6.430e+02	GT:AD:DP:GQ:PL	0/1:58,63:121:99:739,0,447
chrIII	270048	.	C	T	281.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DP=110;Dels=0.00;FS=1.571;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=48.38;MQ0=0;MQRankSum=-5.748;QD=2.55;ReadPosRankSum=-0.682;SB=-3.990e+02	GT:AD:DP:GQ:PL	0/1:64,46:110:99:311,0,733
chrIII	270055	.	G	C	212.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.434;DP=101;Dels=0.00;FS=5.189;HaplotypeScore=4.9266;MLEAC=1;MLEAF=0.500;MQ=50.02;MQ0=0;MQRankSum=-5.233;QD=2.10;ReadPosRankSum=-2.569;SB=-3.410e+02	GT:AD:DP:GQ:PL	0/1:63,38:101:99:242,0,824
chrIII	270062	.	A	G	93.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;DP=106;Dels=0.00;FS=16.256;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=50.79;MQ0=0;MQRankSum=-7.234;QD=0.88;ReadPosRankSum=-1.904;SB=-1.640e+02	GT:AD:DP:GQ:PL	0/1:76,30:106:99:123,0,951
chrIII	270074	.	A	G	39.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.387;DP=94;Dels=0.00;FS=6.379;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=52.65;MQ0=0;MQRankSum=-6.167;QD=0.41;ReadPosRankSum=-4.811;SB=-1.130e+02	GT:AD:DP:GQ:PL	0/1:75,19:94:69:69,0,993
chrIII	270367	.	T	C	969	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.00;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1002,111,0
chrIII	270414	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.46;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1199,129,0
chrIII	270582	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.31;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1404,156,0
chrIII	271106	.	G	A	2982	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=14.4317;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.30;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3015,327,0
chrIII	271223	.	A	C	2317	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.97;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2350,261,0
chrIII	271309	.	T	C	2628	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4894;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.91;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2661,294,0
chrIII	271512	.	T	C	2225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.237;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.0320;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=0.622;QD=14.17;ReadPosRankSum=2.853;SB=-1.603e+03	GT:AD:DP:GQ:PL	1/1:3,154:157:99:2258,249,0
chrIII	271594	.	A	G	2476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.395;DP=139;Dels=0.00;FS=8.991;HaplotypeScore=8.5976;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.334;QD=17.81;ReadPosRankSum=3.345;SB=-1.557e+03	GT:AD:DP:GQ:PL	1/1:4,135:139:99:2509,282,0
chrIII	271662	.	C	T	2546	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.9786;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.58;SB=-1.457e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2579,276,0
chrIII	271744	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=9.244;HaplotypeScore=7.4836;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.014;QD=18.59;ReadPosRankSum=2.393;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1632,183,0
chrIII	271775	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=7.219;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=0.015;QD=18.70;ReadPosRankSum=2.390;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1566,171,0
chrIII	271865	.	A	G	3037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.7900;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=2.223;QD=21.39;ReadPosRankSum=0.898;SB=-1.550e+03	GT:AD:DP:GQ:PL	1/1:2,139:142:99:3070,339,0
chrIII	272072	.	G	A	2184	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8913;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.52;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2217,240,0
chrIII	272125	.	G	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.69;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1378,147,0
chrIII	272348	.	A	G	3632.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=156;Dels=0.00;FS=3.298;HaplotypeScore=9.8527;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.177;QD=23.28;ReadPosRankSum=1.688;SB=-1.910e+03	GT:AD:DP:GQ:PL	1/1:1,155:156:99:3632,408,0
chrIII	272975	.	A	C	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DP=70;Dels=0.00;FS=5.027;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.396;QD=19.63;ReadPosRankSum=-0.792;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1407,132,0
chrIII	272988	.	A	G	1307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=71;Dels=0.00;FS=5.389;HaplotypeScore=8.4732;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.112;QD=18.41;ReadPosRankSum=3.105;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:4,67:71:99:1340,153,0
chrIII	273072	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.37;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1336,144,0
chrIII	273250	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=4.771;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-1.011;QD=20.65;ReadPosRankSum=1.660;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1024,114,0
chrIII	273260	.	C	T	1017	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.19;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1050,114,0
chrIII	273312	.	A	G	1250	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-0.346;QD=18.94;ReadPosRankSum=1.679;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1283,144,0
chrIII	273348	.	A	T	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=65.4745;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.756;QD=18.63;ReadPosRankSum=1.635;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1356,144,0
chrIII	273439	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=16.72;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1738,183,0
chrIII	273446	.	A	G	1619	SnpCluster	AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;QD=15.27;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1652,180,0
chrIII	273450	.	A	T	1652	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=16.04;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1685,180,0
chrIII	273452	.	T	G	1632	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=15.84;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1665,180,0
chrIII	273474	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=15.35;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1553,171,0
chrIII	273518	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=-1.992;QD=11.91;ReadPosRankSum=2.380;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:93:867,93,0
chrIII	273523	.	T	G	836	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=13.27;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:96:869,96,0
chrIII	273723	.	T	G	1835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.507;QD=22.38;ReadPosRankSum=1.690;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1868,207,0
chrIII	275765	.	C	T	707	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:81:740,81,0
chrIII	277564	.	G	T	163.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.303;DP=81;Dels=0.00;FS=94.613;HaplotypeScore=9.0744;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.900;QD=2.01;ReadPosRankSum=-5.619;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:58,22:81:99:193,0,821
chrIII	278574	.	A	G	2386	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.39;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2419,273,0
chrIII	285429	.	T	G	3044	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.2362;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.99;SB=-1.657e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3077,333,0
chrIII	286180	.	G	A	1791	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.84;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1824,195,0
chrIII	286623	.	T	C	2537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.990;DP=120;Dels=0.00;FS=12.565;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.256;QD=21.14;ReadPosRankSum=3.311;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:4,116:120:99:2570,282,0
chrIII	288008	.	G	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.8186;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=24.56;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1580,174,0
chrIII	288098	.	A	G	1970	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.185;QD=20.74;ReadPosRankSum=1.696;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2003,219,0
chrIII	288099	.	G	A	2065	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.74;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2098,225,0
chrIII	288246	.	C	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1361,147,0
chrIII	288374	.	A	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.16;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1853,201,0
chrIII	288380	.	T	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.32;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1965,216,0
chrIII	288477	.	G	C	2504	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2537,273,0
chrIII	289067	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.17;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1741,186,0
chrIII	289112	.	G	A	1852	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.71;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1885,210,0
chrIII	289115	.	A	G	1836	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-1.732;QD=18.73;ReadPosRankSum=0.778;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1869,207,0
chrIII	289274	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=19.52;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1204,138,0
chrIII	289278	.	T	G	1230	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.21;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1263,138,0
chrIII	289327	.	A	C	801	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=17.04;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:834,93,0
chrIII	289361	.	A	T	1601	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.93;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1634,177,0
chrIII	289415	.	G	A	2076	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.86;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2109,228,0
chrIII	289535	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=-0.927;QD=22.55;ReadPosRankSum=1.692;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1972,219,0
chrIII	289602	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=15.48;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1380,150,0
chrIII	289603	.	A	G	1373	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=92;Dels=0.00;FS=3.056;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-1.713;QD=14.92;ReadPosRankSum=2.252;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:2,85:92:99:1406,150,0
chrIII	289769	.	C	G	950	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=41.43;MQ0=0;QD=12.67;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:983,108,0
chrIII	289827	.	A	C	873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.716;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;MQRankSum=-1.039;QD=10.91;ReadPosRankSum=1.689;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:906,105,0
chrIII	289846	.	T	C	1075	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;MQRankSum=0.492;QD=11.20;ReadPosRankSum=1.659;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:1108,126,0
chrIII	289850	.	G	T	1025	SnpCluster	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=11.02;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1058,120,0
chrIII	289851	.	G	A	1199	SnpCluster	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=12.76;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1232,135,0
chrIII	289856	.	G	A	1202	SnpCluster	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=12.27;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1235,138,0
chrIII	289942	.	C	T	2474	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=24.50;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2507,267,0
chrIII	290017	.	C	A	2493	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.87;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2526,264,0
chrIII	290098	.	T	C	1451	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.12;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1484,162,0
chrIII	290109	.	C	T	1340	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=16.14;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1373,147,0
chrIII	290265	.	A	G	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=1.175;QD=19.82;ReadPosRankSum=1.613;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1757,192,0
chrIII	290383	.	T	C	1797	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.34;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1830,201,0
chrIII	290605	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=71;Dels=0.03;FS=6.477;HaplotypeScore=21.7336;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-0.805;QD=21.56;ReadPosRankSum=2.343;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1564,174,0
chrIII	290689	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8825;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.00;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1566,171,0
chrIII	290783	.	C	T	1363	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.1052;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.25;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1396,153,0
chrIII	290794	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0327;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.94;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1666,177,0
chrIII	290845	.	G	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=19.80;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1993,219,0
chrIII	290990	.	A	G	56.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.458;DP=89;Dels=0.00;FS=9.730;HaplotypeScore=94.5576;MLEAC=1;MLEAF=0.500;MQ=52.56;MQ0=0;MQRankSum=1.844;QD=0.63;ReadPosRankSum=-5.388;SB=-7.007e+00	GT:AD:DP:GQ:PL	0/1:71,18:89:86:86,0,984
chrIII	291045	.	C	T	1923	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.45;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1956,210,0
chrIII	291163	.	A	T	2349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;MQRankSum=-1.559;QD=19.41;ReadPosRankSum=1.617;SB=-1.538e+03	GT:AD:DP:GQ:PL	1/1:1,119:121:99:2382,255,0
chrIII	291177	.	T	C	2103	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;QD=18.13;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2136,237,0
chrIII	291202	.	C	A	141.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.285;DP=92;Dels=0.00;FS=9.604;HaplotypeScore=80.1285;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;MQRankSum=1.757;QD=1.53;ReadPosRankSum=-5.367;SB=2.87	GT:AD:DP:GQ:PL	1/1:81,11:92:18:174,18,0
chrIII	291204	.	C	T	75.51	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=80.1285;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=0.84;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:0,9:90:12:108,12,0
chrIII	291220	.	A	G	851	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.51;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:884,102,0
chrIII	291246	.	T	C	582	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.39;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:72:615,72,0
chrIII	291255	.	T	C	651	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=54.1245;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.17;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:75:684,75,0
chrIII	291282	.	G	A	397	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=8.82;SB=-1.520e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:48:430,48,0
chrIII	291321	.	C	T	690	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=41.8585;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=12.78;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:81:723,81,0
chrIII	291364	.	T	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=11.0673;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.66;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1171,132,0
chrIII	291481	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=20.35;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1600,171,0
chrIII	291529	.	C	A	951	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=21.13;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:984,105,0
chrIII	291558	.	G	T	460	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=20.00;SB=-6.545e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:54:493,54,0
chrIII	291695	.	A	T	1993	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.88;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2026,216,0
chrIII	291725	.	G	A	1989	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.83;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:2022,216,0
chrIII	291847	.	T	A	2267	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=26.99;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2300,243,0
chrIII	292174	.	A	G	2092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.079;QD=19.19;ReadPosRankSum=1.669;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2125,231,0
chrIII	292183	.	G	A	2092	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.19;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2125,225,0
chrIII	292247	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.25;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1265,132,0
chrIII	292320	.	C	T	569	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.81;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:66:602,66,0
chrIII	292359	.	G	T	589	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:69:622,69,0
chrIII	292449	.	C	T	613	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=20.43;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:66:646,66,0
chrIII	292460	.	C	T	382	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=12.32;SB=-6.793e-03	GT:AD:DP:GQ:PL	1/1:0,29:31:45:415,45,0
chrIII	292464	.	T	C	452	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=15.07;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:54:485,54,0
chrIII	292484	.	T	A	761	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=20.03;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:84:794,84,0
chrIII	292497	.	T	C	674	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=19.26;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:81:707,81,0
chrIII	292632	.	T	C	543	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.68;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:60:576,60,0
chrIII	292733	.	C	A	782	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=6.6731;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.55;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:40:87:815,87,0
chrIII	292937	.	C	T	587	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.96;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:66:620,66,0
chrIII	293006	.	A	G	561	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.34;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:66:594,66,0
chrIII	293017	.	T	C	679	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.40;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:712,81,0
chrIII	293842	.	A	G	1651.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.438;DP=185;Dels=0.00;FS=3.397;HaplotypeScore=17.4290;MLEAC=1;MLEAF=0.500;MQ=49.03;MQ0=0;MQRankSum=-1.571;QD=8.92;ReadPosRankSum=1.489;SB=-8.800e+02	GT:AD:DP:GQ:PL	0/1:86,98:185:99:1681,0,1562
chrIII	293855	.	G	A	1300.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;DP=197;Dels=0.00;FS=4.138;HaplotypeScore=8.5832;MLEAC=1;MLEAF=0.500;MQ=48.41;MQ0=0;MQRankSum=0.717;QD=6.60;ReadPosRankSum=-0.165;SB=-6.820e+02	GT:AD:DP:GQ:PL	0/1:109,88:197:99:1330,0,1919
chrIII	293885	.	C	A	1727.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.195;DP=213;Dels=0.00;FS=2.380;HaplotypeScore=11.9807;MLEAC=1;MLEAF=0.500;MQ=49.05;MQ0=0;MQRankSum=0.047;QD=8.11;ReadPosRankSum=1.260;SB=-9.290e+02	GT:AD:DP:GQ:PL	0/1:121,91:213:99:1757,0,2094
chrIII	293920	.	A	G	1646.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=22.1700;MLEAC=1;MLEAF=0.500;MQ=50.14;MQ0=0;MQRankSum=0.677;QD=7.48;ReadPosRankSum=-0.337;SB=-8.660e+02	GT:AD:DP:GQ:PL	0/1:125,94:220:99:1676,0,2116
chrIII	294257	.	C	G	2884.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=348;Dels=0.00;FS=8.136;HaplotypeScore=32.1736;MLEAC=1;MLEAF=0.500;MQ=51.20;MQ0=0;MQRankSum=-0.152;QD=8.29;ReadPosRankSum=-1.567;SB=-1.565e+03	GT:AD:DP:GQ:PL	0/1:174,163:348:99:2914,0,3176
chrIII	294378	.	C	T	2083.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.551;DP=201;Dels=0.00;FS=4.489;HaplotypeScore=9.6229;MLEAC=1;MLEAF=0.500;MQ=51.21;MQ0=0;MQRankSum=5.741;QD=10.36;ReadPosRankSum=-0.709;SB=-6.890e+02	GT:AD:DP:GQ:PL	0/1:86,113:201:99:2113,0,1553
chrIII	294389	.	A	T	4342.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=193;Dels=0.00;FS=10.712;HaplotypeScore=15.1437;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-1.061;QD=22.50;ReadPosRankSum=2.398;SB=-1.381e+03	GT:AD:DP:GQ:PL	1/1:2,191:193:99:4342,465,0
chrIII	294569	.	C	A	3810.01	PASS	AC=2;AF=1.00;AN=2;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=19.44;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:1,195:196:99:3810,417,0
chrIII	294593	.	T	C	3179	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=18.81;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,168:169:99:3212,351,0
chrIII	294611	.	C	G	1889.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.906;DP=136;Dels=0.00;FS=16.201;HaplotypeScore=7.3813;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;MQRankSum=4.388;QD=13.89;ReadPosRankSum=4.771;SB=-6.145e+02	GT:AD:DP:GQ:PL	1/1:19,115:136:12:1922,12,0
chrIII	294636	.	T	A	2327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=136;Dels=0.00;FS=8.885;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;MQRankSum=4.613;QD=17.11;ReadPosRankSum=4.522;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:15,121:136:99:2360,252,0
chrIII	294663	.	A	G	2615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-1.305;QD=19.96;ReadPosRankSum=2.375;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:2,129:131:99:2648,300,0
chrIII	294703	.	T	A	2862	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=21.85;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2895,312,0
chrIII	294932	.	C	T	2153	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=25.03;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2186,234,0
chrIII	295047	.	C	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=23.48;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1747,189,0
chrIII	295099	.	A	T	1985	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.56;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2018,216,0
chrIII	295166	.	A	T	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.142;DP=90;Dels=0.00;FS=2.430;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.498;QD=18.10;ReadPosRankSum=3.240;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:4,86:90:99:1662,186,0
chrIII	295252	.	G	C	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;DP=200;Dels=0.00;FS=0.518;HaplotypeScore=102.8912;MLEAC=1;MLEAF=0.500;MQ=35.92;MQ0=0;MQRankSum=-3.208;QD=0.11;ReadPosRankSum=-1.466;SB=-9.340e+02	GT:AD:DP:GQ:PL	0/1:102,97:200:52:52,0,1380
chrIII	295267	.	C	A	1248.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DP=206;Dels=0.00;FS=1.696;HaplotypeScore=90.6646;MLEAC=1;MLEAF=0.500;MQ=36.95;MQ0=0;MQRankSum=-1.437;QD=6.06;ReadPosRankSum=-2.823;SB=-1.054e+03	GT:AD:DP:GQ:PL	0/1:102,104:206:99:1278,0,634
chrIII	295277	.	T	A	513.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=187;Dels=0.00;FS=1.189;HaplotypeScore=2.7227;MLEAC=1;MLEAF=0.500;MQ=37.12;MQ0=0;MQRankSum=-3.042;QD=2.74;ReadPosRankSum=0.323;SB=-5.640e+02	GT:AD:DP:GQ:PL	0/1:115,72:187:99:543,0,857
chrIII	295278	.	A	G	527.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;DP=184;Dels=0.00;FS=1.198;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=37.04;MQ0=0;MQRankSum=-4.282;QD=2.86;ReadPosRankSum=0.128;SB=-5.430e+02	GT:AD:DP:GQ:PL	0/1:113,71:184:99:557,0,894
chrIII	295280	.	T	C	892.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;DP=180;Dels=0.00;FS=0.570;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=37.20;MQ0=0;MQRankSum=1.125;QD=4.96;ReadPosRankSum=0.439;SB=-9.830e+02	GT:AD:DP:GQ:PL	0/1:70,110:180:99:922,0,548
chrIII	295285	.	T	C	885.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.877;DP=180;Dels=0.00;FS=0.576;HaplotypeScore=3.4272;MLEAC=1;MLEAF=0.500;MQ=37.61;MQ0=0;MQRankSum=0.902;QD=4.92;ReadPosRankSum=1.368;SB=-9.820e+02	GT:AD:DP:GQ:PL	0/1:70,110:180:99:915,0,485
chrIII	295287	.	T	A	388.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=37.88;MQ0=0;MQRankSum=-2.750;QD=2.28;ReadPosRankSum=0.720;SB=-4.050e+02	GT:AD:DP:GQ:PL	0/1:113,57:170:99:418,0,878
chrIII	295288	.	A	G	382.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=169;Dels=0.00;FS=0.617;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=37.93;MQ0=0;MQRankSum=-3.320;QD=2.26;ReadPosRankSum=0.439;SB=-3.840e+02	GT:AD:DP:GQ:PL	0/1:112,57:169:99:412,0,949
chrIII	295294	.	C	A	372.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=8.080;DP=160;Dels=0.00;FS=0.636;HaplotypeScore=3.3493;MLEAC=1;MLEAF=0.500;MQ=38.82;MQ0=0;MQRankSum=-4.910;QD=2.33;ReadPosRankSum=-1.769;SB=-4.150e+02	GT:AD:DP:GQ:PL	0/1:104,56:160:99:402,0,997
chrIII	295297	.	C	T	345.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.161;DP=153;Dels=0.00;FS=2.285;HaplotypeScore=2.5606;MLEAC=1;MLEAF=0.500;MQ=39.25;MQ0=0;MQRankSum=-3.710;QD=2.25;ReadPosRankSum=-1.197;SB=-3.750e+02	GT:AD:DP:GQ:PL	0/1:105,48:153:99:375,0,1012
chrIII	295298	.	C	T	345.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.305;DP=153;Dels=0.00;FS=2.285;HaplotypeScore=3.4272;MLEAC=1;MLEAF=0.500;MQ=39.25;MQ0=0;MQRankSum=-3.214;QD=2.25;ReadPosRankSum=-1.705;SB=-4.190e+02	GT:AD:DP:GQ:PL	0/1:105,48:153:99:375,0,1045
chrIII	295304	.	A	G	1019.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;DP=152;Dels=0.00;FS=3.212;HaplotypeScore=3.4272;MLEAC=1;MLEAF=0.500;MQ=39.31;MQ0=0;MQRankSum=2.935;QD=6.70;ReadPosRankSum=4.770;SB=-7.550e+02	GT:AD:DP:GQ:PL	0/1:48,104:152:99:1049,0,370
chrIII	295306	.	A	T	302.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;DP=156;Dels=0.00;FS=1.418;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=39.75;MQ0=0;MQRankSum=-2.982;QD=1.94;ReadPosRankSum=-4.890;SB=-3.240e+02	GT:AD:DP:GQ:PL	0/1:108,48:156:99:332,0,978
chrIII	295309	.	A	C	262.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;DP=149;Dels=0.00;FS=2.481;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=40.42;MQ0=0;MQRankSum=-3.832;QD=1.76;ReadPosRankSum=-4.061;SB=-2.910e+02	GT:AD:DP:GQ:PL	0/1:109,40:149:99:292,0,1017
chrIII	295311	.	A	C	214.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;DP=148;Dels=0.00;FS=2.481;HaplotypeScore=3.2762;MLEAC=1;MLEAF=0.500;MQ=40.94;MQ0=0;MQRankSum=-4.428;QD=1.45;ReadPosRankSum=-4.393;SB=-2.690e+02	GT:AD:DP:GQ:PL	0/1:108,40:148:99:244,0,1107
chrIII	295314	.	A	C	226.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.704;DP=149;Dels=0.00;FS=2.466;HaplotypeScore=4.8535;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=0;MQRankSum=-5.525;QD=1.52;ReadPosRankSum=-4.803;SB=-2.850e+02	GT:AD:DP:GQ:PL	0/1:108,40:149:99:256,0,1234
chrIII	295317	.	T	C	192.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;DP=147;Dels=0.00;FS=2.500;HaplotypeScore=3.2762;MLEAC=1;MLEAF=0.500;MQ=41.47;MQ0=0;MQRankSum=-4.745;QD=1.31;ReadPosRankSum=-6.062;SB=-2.640e+02	GT:AD:DP:GQ:PL	0/1:107,40:147:99:222,0,1273
chrIII	295322	.	A	T	153.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;DP=143;Dels=0.00;FS=1.575;HaplotypeScore=4.9827;MLEAC=1;MLEAF=0.500;MQ=42.63;MQ0=0;MQRankSum=-5.015;QD=1.07;ReadPosRankSum=-6.821;SB=-2.040e+02	GT:AD:DP:GQ:PL	0/1:107,36:143:99:183,0,1229
chrIII	295327	.	C	T	1176.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;DP=135;Dels=0.00;FS=1.663;HaplotypeScore=3.4398;MLEAC=1;MLEAF=0.500;MQ=43.54;MQ0=0;MQRankSum=2.931;QD=8.71;ReadPosRankSum=8.553;SB=-8.500e+02	GT:AD:DP:GQ:PL	0/1:33,102:135:99:1206,0,180
chrIII	295373	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.57;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1737,186,0
chrIII	295441	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3036;MLEAC=2;MLEAF=1.00;MQ=47.44;MQ0=0;QD=18.83;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1596,174,0
chrIII	295448	.	A	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=20.00;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1673,186,0
chrIII	295462	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;MQRankSum=-0.831;QD=19.01;ReadPosRankSum=1.685;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1421,159,0
chrIII	295645	.	G	A	2036	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.36;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2069,228,0
chrIII	295735	.	G	A	1776	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=16.91;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1809,198,0
chrIII	295739	.	T	C	1975	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=18.63;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2008,222,0
chrIII	295750	.	C	T	1859	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=16.45;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1892,207,0
chrIII	295780	.	T	C	1560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=97;Dels=0.00;FS=5.760;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;MQRankSum=-0.073;QD=16.08;ReadPosRankSum=2.886;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:3,94:97:99:1593,174,0
chrIII	295891	.	A	C	2223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.515;DP=101;Dels=0.00;FS=26.686;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.213;QD=22.01;ReadPosRankSum=3.750;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:5,96:101:99:2256,249,0
chrIII	296007	.	T	C	2345	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.2141;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=20.57;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2378,270,0
chrIII	296008	.	T	G	2331	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.4254;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=20.63;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2364,273,0
chrIII	296023	.	A	G	2194	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=20.31;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2227,249,0
chrIII	296061	.	T	C	2086	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=20.45;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2119,237,0
chrIII	296106	.	G	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=19.14;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1488,159,0
chrIII	296111	.	C	G	1504	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=19.04;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,75:79:99:1537,168,0
chrIII	296170	.	T	A	2630	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.92;SB=-1.575e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2663,285,0
chrIII	296208	.	C	A	3151	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.00;SB=-1.769e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3184,345,0
chrIII	296219	.	C	T	3463.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.93;SB=-2.016e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3463,372,0
chrIII	296406	.	C	T	2240	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=23.09;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2273,240,0
chrIII	296603	.	C	A	2548	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=24.74;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2581,279,0
chrIII	296689	.	C	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.35;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1213,132,0
chrIII	296757	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.102;QD=16.53;ReadPosRankSum=1.680;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1124,123,0
chrIII	296914	.	G	A	2672	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.1545;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=22.45;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2705,288,0
chrIII	297005	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.15;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1468,153,0
chrIII	297012	.	T	C	1226	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.10;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1259,141,0
chrIII	297919	.	G	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.43;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1710,186,0
chrIII	298117	.	G	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.94;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1681,186,0
chrIII	298326	.	G	A	1637	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.43;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1670,180,0
chrIII	298402	.	T	C	731	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=14.33;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:84:764,84,0
chrIII	298408	.	A	G	735	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=13.87;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:768,84,0
chrIII	298441	.	C	T	782	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=13.48;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:90:815,90,0
chrIII	298548	.	G	A	2094	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.57;SB=-1.475e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2127,222,0
chrIII	298597	.	G	A	2109	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.01;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2142,234,0
chrIII	298764	.	C	T	1782	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=22.85;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1815,192,0
chrIII	298878	.	C	G	2062	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.22;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2095,237,0
chrIII	298901	.	C	G	1995	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.78;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2028,228,0
chrIII	298949	.	A	C	2013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.791;QD=21.65;ReadPosRankSum=1.694;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2046,225,0
chrIII	299019	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.014;DP=88;Dels=0.00;FS=8.435;HaplotypeScore=11.9574;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.452;QD=18.67;ReadPosRankSum=3.350;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:4,80:88:99:1676,183,0
chrIII	299098	.	C	T	1739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=100;Dels=0.00;FS=3.522;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=1.697;QD=17.39;ReadPosRankSum=0.017;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1772,186,0
chrIII	299155	.	C	G	1803	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.39;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1836,204,0
chrIII	299165	.	G	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.21;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1672,180,0
chrIII	299184	.	C	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=16.44;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1513,162,0
chrIII	299220	.	T	C	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.727;QD=16.97;ReadPosRankSum=1.663;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:2,99:102:99:1764,192,0
chrIII	299262	.	A	G	2146	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.83;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2179,237,0
chrIII	299288	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.293;HaplotypeScore=5.0728;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=1.692;QD=19.69;ReadPosRankSum=1.692;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1746,195,0
chrIII	299395	.	G	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.9609;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.01;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1535,168,0
chrIII	299645	.	T	C	2052	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=22.30;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2085,228,0
chrIII	299655	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=22.07;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2063,225,0
chrIII	299687	.	C	T	1757	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=20.92;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1790,195,0
chrIII	300118	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1515,165,0
chrIII	300168	.	G	T	1315	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.29;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1348,144,0
chrIII	300273	.	A	G	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=3.660;HaplotypeScore=3.5219;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.241;QD=19.19;ReadPosRankSum=1.588;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1434,159,0
chrIII	300695	.	G	A	2780	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.4678;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.36;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2813,306,0
chrIII	300759	.	G	A	2841	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.20;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2874,309,0
chrIII	300866	.	G	A	1630	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=20.12;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:81:99:1663,183,0
chrIII	300877	.	A	G	2006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=-0.056;QD=21.57;ReadPosRankSum=1.695;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2039,225,0
chrIII	300989	.	G	C	1702	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=22.10;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1735,192,0
chrIII	301207	.	A	G	905	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=16.76;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:938,111,0
chrIII	301212	.	G	C	858	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=17.51;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:891,105,0
chrIII	301213	.	G	A	900	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.20;MQ0=0;QD=18.37;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:933,105,0
chrIII	301219	.	C	T	856	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;QD=17.12;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:889,99,0
chrIII	301233	.	T	A	606	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=15.15;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,39:40:72:639,72,0
chrIII	301243	.	G	A	573	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.49;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:66:606,66,0
chrIII	301251	.	C	T	397	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.23;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:45:430,45,0
chrIII	301292	.	G	A	383	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.77;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:45:416,45,0
chrIII	301295	.	C	T	417	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.38;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:48:450,48,0
chrIII	301303	.	G	C	437	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.24;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:54:470,54,0
chrIII	301306	.	C	T	481	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.52;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:54:514,54,0
chrIII	301307	.	A	C	470	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.16;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:54:503,54,0
chrIII	301312	.	T	C	475	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.57;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:54:508,54,0
chrIII	301315	.	C	A	429	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.92;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:48:462,48,0
chrIII	301319	.	A	G	373	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.840;QD=9.82;ReadPosRankSum=2.317;SB=-1.560e+02	GT:AD:DP:GQ:PL	1/1:2,35:38:45:406,45,0
chrIII	301323	.	G	A	358	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.19;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:42:391,42,0
chrIII	301331	.	G	C	280	SnpCluster	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.33;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:36:313,36,0
chrIII	301335	.	T	G	300	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.11;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:36:333,36,0
chrIII	301336	.	T	C	279	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.33;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:36:312,36,0
chrIII	301352	.	A	G	456	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.36;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:54:489,54,0
chrIII	301356	.	G	T	457	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.16;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:51:490,51,0
chrIII	301363	.	T	C	368	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.36;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:45:401,45,0
chrIII	301369	.	G	C	421	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.79;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:48:454,48,0
chrIII	301370	.	T	C	415	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.65;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:48:448,48,0
chrIII	301378	.	A	G	497	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.14;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:57:530,57,0
chrIII	301382	.	A	G	484	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.88;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:57:517,57,0
chrIII	301394	.	T	A	430	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.15;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:51:463,51,0
chrIII	301400	.	A	G	417	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.34;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:51:450,51,0
chrIII	301406	.	C	T	469	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.38;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:57:502,57,0
chrIII	301408	.	T	C	487	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.74;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:57:520,57,0
chrIII	301421	.	C	T	736	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.68;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:81:769,81,0
chrIII	301425	.	A	G	743	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.26;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:84:776,84,0
chrIII	301432	.	G	A	584	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.73;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:69:617,69,0
chrIII	301437	.	T	C	448	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.67;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:481,54,0
chrIII	301438	.	A	T	414	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.86;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:51:447,51,0
chrIII	301440	.	A	C	445	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.60;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:478,54,0
chrIII	301441	.	A	T	458	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:491,54,0
chrIII	301444	.	A	C	448	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.67;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:481,54,0
chrIII	301446	.	G	C	458	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.90;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:491,54,0
chrIII	301448	.	G	A	472	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.24;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:505,54,0
chrIII	301452	.	A	G	467	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.12;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:500,54,0
chrIII	301453	.	C	T	482	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.48;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:515,54,0
chrIII	301454	.	A	T	474	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.29;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:507,54,0
chrIII	301465	.	G	T	397	SnpCluster	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=4.56;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:48:430,48,0
chrIII	301467	.	T	C	500	SnpCluster	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=5.75;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:60:533,60,0
chrIII	301472	.	T	A	526	SnpCluster	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=5.48;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:60:559,60,0
chrIII	301476	.	C	G	509	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=5.36;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:60:542,60,0
chrIII	301477	.	T	C	488	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=0.469;QD=5.08;ReadPosRankSum=1.696;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:60:521,60,0
chrIII	301487	.	C	T	543	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;QD=5.43;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:63:576,63,0
chrIII	301490	.	G	A	660	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=6.47;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:81:693,81,0
chrIII	301506	.	G	A	523	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;QD=5.39;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:60:556,60,0
chrIII	301524	.	T	G	451	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=5.01;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:54:484,54,0
chrIII	301528	.	A	T	537	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.88;MQ0=0;QD=6.17;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:60:570,60,0
chrIII	301536	.	G	T	554	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.84;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:66:587,66,0
chrIII	301552	.	T	C	458	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=7.90;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:57:491,57,0
chrIII	301553	.	A	G	462	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=7.97;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:57:495,57,0
chrIII	301582	.	A	G	210.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=8.325;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=-0.612;QD=6.18;ReadPosRankSum=1.631;SB=-9.202e+01	GT:AD:DP:GQ:PL	1/1:1,33:34:27:243,27,0
chrIII	301601	.	C	T	136.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=6.81;SB=-2.214e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:18:169,18,0
chrIII	301603	.	C	A	143.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=7.16;SB=-2.214e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:18:176,18,0
chrIII	301604	.	C	T	143.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=7.16;SB=-2.214e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:18:176,18,0
chrIII	301613	.	T	C	50.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.40;SB=-9.815e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:9:83,9,0
chrIII	301615	.	G	A	54.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.66;SB=-9.815e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:9:87,9,0
chrIII	301619	.	A	G	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.84;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:57,6,0
chrIII	301621	.	C	T	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.77;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:56,6,0
chrIII	301622	.	G	A	19.81	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.41;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:51,6,0
chrIII	301628	.	A	G	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.77;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:56,6,0
chrIII	301631	.	A	G	46.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.61;SB=-9.807e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:79,9,0
chrIII	301654	.	G	A	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.75;SB=-8.564e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:6:56,6,0
chrIII	301665	.	T	C	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.25;SB=-1.135e+02	GT:AD:DP:GQ:PL	1/1:0,11:11:6:56,6,0
chrIII	301668	.	T	C	80.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.000;QD=6.71;ReadPosRankSum=1.448;SB=-1.155e+02	GT:AD:DP:GQ:PL	1/1:1,11:12:12:113,12,0
chrIII	301748	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=2.693;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=0;MQRankSum=-0.050;QD=23.43;ReadPosRankSum=2.383;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:1790,198,0
chrIII	301831	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.2803;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=18.29;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1441,153,0
chrIII	301864	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.4661;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=18.32;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1792,195,0
chrIII	302009	.	G	A	472	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=21.45;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:54:505,54,0
chrIII	302024	.	C	A	379	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=18.95;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:45:412,45,0
chrIII	302036	.	G	C	462	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=17.11;SB=-7.201e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:57:495,57,0
chrIII	302042	.	C	T	375	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=14.42;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:45:408,45,0
chrIII	302043	.	T	C	370	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.80;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:45:403,45,0
chrIII	302050	.	G	A	369	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.18;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:45:402,45,0
chrIII	302052	.	T	C	382	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.64;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:45:415,45,0
chrIII	302057	.	A	T	370	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.70;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:42:403,42,0
chrIII	302059	.	C	G	354	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.11;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:42:387,42,0
chrIII	302061	.	G	T	375	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.89;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:42:408,42,0
chrIII	302063	.	A	G	338	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.52;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:42:371,42,0
chrIII	302068	.	C	T	381	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.61;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:42:414,42,0
chrIII	302074	.	T	C	366	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.56;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:42:399,42,0
chrIII	302076	.	G	A	355	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.15;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:42:388,42,0
chrIII	302080	.	T	A	236	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.83;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:36:269,36,0
chrIII	302081	.	T	C	32.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.37;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,24:24:9:65,9,0
chrIII	302087	.	C	A	330	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.31;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:39:363,39,0
chrIII	302094	.	A	G	136.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.854;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.664;QD=4.69;ReadPosRankSum=3.131;SB=2.94	GT:AD:DP:GQ:PL	1/1:4,25:29:21:169,21,0
chrIII	302095	.	G	A	136.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.411;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.411;QD=4.69;ReadPosRankSum=3.131;SB=2.94	GT:AD:DP:GQ:PL	1/1:4,25:29:21:169,21,0
chrIII	302102	.	G	T	187.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.309;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.119;QD=4.92;ReadPosRankSum=3.211;SB=1.15	GT:AD:DP:GQ:PL	1/1:4,34:38:24:220,24,0
chrIII	302105	.	C	T	200.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.72;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,35:35:24:233,24,0
chrIII	302111	.	G	A	168.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.94;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,34:34:21:201,21,0
chrIII	302124	.	C	T	50.97	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=24.1627;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.64;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,31:31:9:83,9,0
chrIII	302137	.	C	A	38.97	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.56;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,25:25:9:71,9,0
chrIII	302138	.	T	A	41.97	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.68;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,25:25:9:74,9,0
chrIII	302165	.	C	T	75.51	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.22;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,34:34:12:108,12,0
chrIII	302184	.	G	T	183.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.46;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,41:41:24:216,24,0
chrIII	302187	.	G	A	258	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.14;SB=-1.520e-02	GT:AD:DP:GQ:PL	1/1:0,42:42:30:291,30,0
chrIII	302192	.	A	G	241	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.18;SB=-1.520e-02	GT:AD:DP:GQ:PL	1/1:0,39:39:30:274,30,0
chrIII	302207	.	G	A	333	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:39:366,39,0
chrIII	302210	.	C	G	318	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.15;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:39:351,39,0
chrIII	302211	.	G	A	333	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.54;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:39:366,39,0
chrIII	302222	.	C	T	535	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.63;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:60:568,60,0
chrIII	302232	.	C	A	556	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.36;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:63:589,63,0
chrIII	302233	.	C	T	549	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.20;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:63:582,63,0
chrIII	302261	.	T	A	531	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=12.35;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:63:564,63,0
chrIII	302280	.	T	C	424	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=11.78;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:54:457,54,0
chrIII	302283	.	G	T	479	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=13.69;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:54:512,54,0
chrIII	302291	.	C	T	380	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=13.10;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:45:413,45,0
chrIII	302309	.	A	G	202.01	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=11.88;SB=-2.375e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:27:235,27,0
chrIII	302312	.	A	T	155.06	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=10.34;SB=-7.470e-02	GT:AD:DP:GQ:PL	1/1:0,15:15:21:188,21,0
chrIII	302325	.	T	C	94.26	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=10.47;SB=-2.556e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:15:127,15,0
chrIII	302326	.	T	G	104.26	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=11.58;SB=-2.556e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:15:137,15,0
chrIII	302342	.	G	T	77.51	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.61;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:110,12,0
chrIII	302351	.	C	T	77.51	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.69;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:12:110,12,0
chrIII	302354	.	T	A	79.51	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.94;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:12:112,12,0
chrIII	302364	.	G	T	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.47;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,8:8:6:59,6,0
chrIII	302381	.	T	C	26.77	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.69;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:58,6,0
chrIII	302387	.	G	A	19.81	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.95;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:51,6,0
chrIII	302390	.	T	C	20.80	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.20;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:52,6,0
chrIII	302459	.	A	G	49.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.55;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:82,9,0
chrIII	302461	.	T	C	45.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.11;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:78,9,0
chrIII	302462	.	G	A	49.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.55;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:82,9,0
chrIII	302465	.	A	G	52.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.89;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:85,9,0
chrIII	302467	.	G	C	51.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.77;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:84,9,0
chrIII	302475	.	T	G	50.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.92;SB=-9.796e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:83,9,0
chrIII	302477	.	A	G	50.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.92;SB=-9.807e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:83,9,0
chrIII	302494	.	C	T	104.26	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.13;SB=-2.727e-01	GT:AD:DP:GQ:PL	1/1:0,17:17:15:137,15,0
chrIII	302495	.	T	G	124.13	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.30;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,17:17:18:157,18,0
chrIII	302511	.	G	A	202.03	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.78;SB=-4.095e-02	GT:AD:DP:GQ:PL	1/1:0,23:23:24:235,24,0
chrIII	302518	.	T	C	185.03	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.12;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,26:26:24:218,24,0
chrIII	302525	.	A	G	178.03	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.36;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,28:28:24:211,24,0
chrIII	302544	.	T	C	163.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.44;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,30:30:21:196,21,0
chrIII	302546	.	C	G	158.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.27;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,30:30:21:191,21,0
chrIII	302548	.	C	A	87.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.91;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:0,30:30:15:120,15,0
chrIII	302571	.	A	C	146.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.87;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,30:30:21:179,21,0
chrIII	302574	.	A	C	155.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.85;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,32:32:21:188,21,0
chrIII	302578	.	G	A	135.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.09;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,33:33:18:168,18,0
chrIII	302586	.	C	T	125.13	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.79;SB=-2.414e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:18:158,18,0
chrIII	302638	.	A	T	357	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=41.4707;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.11;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:42:390,42,0
chrIII	302654	.	T	C	348	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.29;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:42:381,42,0
chrIII	302657	.	C	T	375	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.15;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:42:408,42,0
chrIII	302674	.	T	A	155.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.460;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=20.6232;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.447;QD=2.28;ReadPosRankSum=-5.934;SB=2.94	GT:AD:DP:GQ:PL	1/1:21,47:68:21:188,21,0
chrIII	302686	.	A	G	107.26	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.82;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:0,59:59:15:140,15,0
chrIII	302696	.	C	T	134.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;QD=2.53;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,53:53:18:167,18,0
chrIII	302705	.	T	C	132.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=2.64;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,50:50:18:165,18,0
chrIII	302706	.	C	G	122.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=2.44;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,50:50:18:155,18,0
chrIII	302716	.	G	A	128.13	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=2.79;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,46:46:18:161,18,0
chrIII	302731	.	T	C	161.06	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=3.58;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,45:45:21:194,21,0
chrIII	302745	.	A	T	168.06	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=5.09;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,33:33:21:201,21,0
chrIII	302790	.	T	A	132.13	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=0;QD=5.74;SB=-1.711e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:18:165,18,0
chrIII	302798	.	A	T	138.06	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=5.52;SB=-1.891e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:21:171,21,0
chrIII	302803	.	G	A	206.01	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;QD=7.63;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:27:239,27,0
chrIII	302979	.	G	A	1597	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=19.96;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1630,171,0
chrIII	303073	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=5.0558;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=17.53;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1295,141,0
chrIII	303175	.	G	A	896	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=16.00;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:929,99,0
chrIII	303180	.	C	T	800	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=13.11;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:90:833,90,0
chrIII	303499	.	C	T	2008	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=20.70;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2041,216,0
chrIII	303576	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.75;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1174,129,0
chrIII	303749	.	G	A	1545	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2363;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=1;QD=18.18;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1578,168,0
chrIII	303754	.	A	G	1124.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DP=84;Dels=0.00;FS=12.827;HaplotypeScore=2.6590;MLEAC=1;MLEAF=0.500;MQ=40.30;MQ0=1;MQRankSum=2.169;QD=13.39;ReadPosRankSum=-0.149;SB=-7.158e+02	GT:AD:DP:GQ:PL	0/1:13,71:84:0:1153,0,0
chrIII	303762	.	C	G	929.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;DP=82;Dels=0.00;FS=28.549;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=36.97;MQ0=1;MQRankSum=3.616;QD=11.33;ReadPosRankSum=-0.518;SB=-8.060e+02	GT:AD:DP:GQ:PL	0/1:15,67:82:40:959,0,40
chrIII	303779	.	C	G	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;DP=88;Dels=0.00;FS=54.153;HaplotypeScore=2.8279;MLEAC=1;MLEAF=0.500;MQ=36.75;MQ0=1;MQRankSum=-2.864;QD=0.30;ReadPosRankSum=1.226;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,18:88:56:56,0,841
chrIII	303780	.	C	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.8279;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=1;QD=13.69;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1251,135,0
chrIII	303795	.	C	T	903.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;DP=94;Dels=0.00;FS=45.517;HaplotypeScore=5.7188;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=1;MQRankSum=2.625;QD=9.61;ReadPosRankSum=-0.910;SB=-8.270e+02	GT:AD:DP:GQ:PL	0/1:20,74:94:39:933,0,39
chrIII	303799	.	T	G	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;DP=94;Dels=0.00;FS=45.517;HaplotypeScore=4.9301;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=1;MQRankSum=-3.025;QD=0.19;ReadPosRankSum=0.872;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,20:94:48:48,0,1026
chrIII	303903	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=71;Dels=0.00;FS=31.480;HaplotypeScore=14.1750;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=5.000;QD=17.31;ReadPosRankSum=1.084;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:16,55:71:99:1262,135,0
chrIII	303913	.	C	T	1167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.901;DP=72;Dels=0.00;FS=29.141;HaplotypeScore=8.4645;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=1;MQRankSum=5.102;QD=16.21;ReadPosRankSum=2.283;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:15,57:72:99:1200,132,0
chrIII	304019	.	T	C	2003	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=6;MQRankSum=-1.493;QD=16.42;ReadPosRankSum=1.493;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2036,225,0
chrIII	304058	.	T	C	710.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.644;DP=122;Dels=0.00;FS=78.287;HaplotypeScore=20.5057;MLEAC=1;MLEAF=0.500;MQ=44.59;MQ0=5;MQRankSum=3.069;QD=5.82;ReadPosRankSum=-2.312;SB=-3.670e+02	GT:AD:DP:GQ:PL	0/1:60,61:122:99:740,0,807
chrIII	304102	.	A	G	413.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;DP=162;Dels=0.00;FS=9.260;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=45.58;MQ0=3;MQRankSum=-4.342;QD=2.55;ReadPosRankSum=-0.458;SB=-3.001e+01	GT:AD:DP:GQ:PL	0/1:125,36:162:99:443,0,1903
chrIII	304108	.	A	G	363.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;DP=164;Dels=0.00;FS=5.983;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=45.22;MQ0=4;MQRankSum=-4.513;QD=2.21;ReadPosRankSum=-0.681;SB=-5.801e+01	GT:AD:DP:GQ:PL	0/1:127,37:164:99:393,0,2142
chrIII	304116	.	A	G	332.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;DP=164;Dels=0.00;FS=1.546;HaplotypeScore=8.0715;MLEAC=1;MLEAF=0.500;MQ=44.35;MQ0=4;MQRankSum=-4.904;QD=2.02;ReadPosRankSum=-1.088;SB=-1.150e+02	GT:AD:DP:GQ:PL	0/1:126,37:164:99:362,0,2094
chrIII	304117	.	T	G	341.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=44.25;MQ0=4;MQRankSum=-4.579;QD=2.08;ReadPosRankSum=-1.026;SB=-1.380e+02	GT:AD:DP:GQ:PL	0/1:127,37:164:99:371,0,2190
chrIII	304178	.	T	C	1212.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;DP=149;Dels=0.00;FS=4.365;HaplotypeScore=18.7666;MLEAC=1;MLEAF=0.500;MQ=42.32;MQ0=6;MQRankSum=-1.386;QD=8.13;ReadPosRankSum=1.029;SB=-5.920e+02	GT:AD:DP:GQ:PL	0/1:51,97:149:99:1242,0,662
chrIII	304198	.	G	T	1008.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.490;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=39.7130;MLEAC=1;MLEAF=0.500;MQ=44.82;MQ0=5;MQRankSum=-3.154;QD=7.69;ReadPosRankSum=-0.312;SB=-6.910e+02	GT:AD:DP:GQ:PL	0/1:50,81:131:99:1038,0,905
chrIII	304205	.	A	G	246.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.646;DP=140;Dels=0.00;FS=103.097;HaplotypeScore=42.3219;MLEAC=1;MLEAF=0.500;MQ=44.85;MQ0=5;MQRankSum=-5.720;QD=1.76;ReadPosRankSum=1.462;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:97,43:140:99:276,0,1740
chrIII	304218	.	A	G	778.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.834;DP=145;Dels=0.00;FS=9.998;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=46.81;MQ0=5;MQRankSum=-3.993;QD=5.37;ReadPosRankSum=-1.491;SB=-5.990e+02	GT:AD:DP:GQ:PL	0/1:64,81:145:99:808,0,1309
chrIII	304236	.	T	G	95.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050;DP=132;Dels=0.00;FS=67.383;HaplotypeScore=5.8084;MLEAC=1;MLEAF=0.500;MQ=50.56;MQ0=3;MQRankSum=-3.571;QD=0.72;ReadPosRankSum=-1.644;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:98,34:132:99:125,0,1841
chrIII	304274	.	A	G	252.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.972;DP=209;Dels=0.00;FS=240.436;HaplotypeScore=53.6004;MLEAC=1;MLEAF=0.500;MQ=50.63;MQ0=0;MQRankSum=3.413;QD=1.21;ReadPosRankSum=-0.675;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:153,56:209:99:282,0,2255
chrIII	304326	.	G	A	173.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;DP=252;Dels=0.00;FS=78.079;HaplotypeScore=12.6216;MLEAC=1;MLEAF=0.500;MQ=50.39;MQ0=0;MQRankSum=-5.375;QD=0.69;ReadPosRankSum=-2.578;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:182,68:252:99:203,0,2693
chrIII	304328	.	G	A	123.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;DP=254;Dels=0.00;FS=83.310;HaplotypeScore=9.1984;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=0;MQRankSum=-5.456;QD=0.48;ReadPosRankSum=-1.289;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:185,69:254:99:153,0,2650
chrIII	304425	.	C	T	1646.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.971;DP=239;Dels=0.00;FS=17.151;HaplotypeScore=8.9699;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=1;MQRankSum=1.289;QD=6.89;ReadPosRankSum=-2.560;SB=-3.630e+02	GT:AD:DP:GQ:PL	0/1:145,94:239:99:1676,0,2530
chrIII	304520	.	G	T	1437.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;DP=170;Dels=0.00;FS=7.766;HaplotypeScore=17.0983;MLEAC=1;MLEAF=0.500;MQ=52.96;MQ0=0;MQRankSum=4.151;QD=8.45;ReadPosRankSum=-1.672;SB=-7.520e+02	GT:AD:DP:GQ:PL	0/1:82,87:170:99:1467,0,1255
chrIII	304760	.	C	A	1388.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.924;DP=269;Dels=0.00;FS=43.465;HaplotypeScore=29.4621;MLEAC=1;MLEAF=0.500;MQ=49.46;MQ0=1;MQRankSum=1.604;QD=5.16;ReadPosRankSum=0.534;SB=-2.510e+02	GT:AD:DP:GQ:PL	0/1:157,108:269:99:1418,0,2162
chrIII	304787	.	T	A	1116.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270;DP=240;Dels=0.00;FS=28.774;HaplotypeScore=19.1425;MLEAC=1;MLEAF=0.500;MQ=49.26;MQ0=1;MQRankSum=3.606;QD=4.65;ReadPosRankSum=-0.368;SB=-3.790e+02	GT:AD:DP:GQ:PL	0/1:147,93:240:99:1146,0,2532
chrIII	304800	.	T	C	645.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.446;DP=256;Dels=0.00;FS=27.865;HaplotypeScore=16.0125;MLEAC=1;MLEAF=0.500;MQ=49.77;MQ0=2;MQRankSum=-3.171;QD=2.52;ReadPosRankSum=1.144;SB=-1.140e+02	GT:AD:DP:GQ:PL	0/1:198,58:256:99:675,0,3168
chrIII	304825	.	G	C	4504.01	PASS	AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=16.6235;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=3;QD=18.92;SB=-2.279e+03	GT:AD:DP:GQ:PL	1/1:0,233:238:99:4504,495,0
chrIII	304919	.	G	C	826.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=138;Dels=0.00;FS=5.204;HaplotypeScore=13.6093;MLEAC=1;MLEAF=0.500;MQ=49.68;MQ0=0;MQRankSum=-1.885;QD=5.99;ReadPosRankSum=-0.470;SB=-4.930e+02	GT:AD:DP:GQ:PL	0/1:74,62:138:99:856,0,1181
chrIII	304990	.	C	T	567.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;DP=106;Dels=0.00;FS=0.745;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=45.48;MQ0=2;MQRankSum=-6.646;QD=5.35;ReadPosRankSum=0.959;SB=-2.120e+02	GT:AD:DP:GQ:PL	0/1:46,60:106:99:597,0,898
chrIII	305002	.	T	C	384.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.758;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=43.55;MQ0=4;MQRankSum=-8.406;QD=3.59;ReadPosRankSum=-0.036;SB=-1.170e+02	GT:AD:DP:GQ:PL	0/1:48,59:107:99:414,0,979
chrIII	305021	.	C	T	228.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DP=111;Dels=0.00;FS=0.779;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=5;MQRankSum=-7.881;QD=2.05;ReadPosRankSum=-0.107;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:61,49:111:99:258,0,1174
chrIII	305033	.	A	G	109.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817;DP=103;Dels=0.00;FS=3.024;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=5;MQRankSum=-7.896;QD=1.06;ReadPosRankSum=-0.004;SB=-4.601e+01	GT:AD:DP:GQ:PL	0/1:62,41:103:99:139,0,1202
chrIII	305105	.	T	C	248.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=119;Dels=0.00;FS=7.069;HaplotypeScore=18.7814;MLEAC=1;MLEAF=0.500;MQ=47.69;MQ0=11;MQRankSum=-7.597;QD=2.08;ReadPosRankSum=-1.528;SB=-1.340e+02	GT:AD:DP:GQ:PL	0/1:77,42:119:99:278,0,1235
chrIII	305117	.	T	C	245.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;DP=132;Dels=0.00;FS=7.248;HaplotypeScore=11.2064;MLEAC=1;MLEAF=0.500;MQ=44.14;MQ0=11;MQRankSum=-5.799;QD=1.86;ReadPosRankSum=-0.184;SB=-6.501e+01	GT:AD:DP:GQ:PL	0/1:101,31:132:99:275,0,1743
chrIII	305237	.	A	G	100.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.994;DP=201;Dels=0.00;FS=12.594;HaplotypeScore=16.0666;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=2;MQRankSum=-6.251;QD=0.50;ReadPosRankSum=2.648;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:156,42:201:99:130,0,2992
chrIII	305240	.	A	T	143.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.971;DP=201;Dels=0.00;FS=9.027;HaplotypeScore=17.6005;MLEAC=1;MLEAF=0.500;MQ=48.69;MQ0=2;MQRankSum=-6.692;QD=0.71;ReadPosRankSum=3.007;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:158,43:201:99:173,0,2728
chrIII	305285	.	G	A	501.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;DP=132;Dels=0.00;FS=39.578;HaplotypeScore=20.1678;MLEAC=1;MLEAF=0.500;MQ=48.67;MQ0=2;MQRankSum=-6.487;QD=3.80;ReadPosRankSum=1.182;SB=-1.570e+02	GT:AD:DP:GQ:PL	0/1:84,48:132:99:531,0,1715
chrIII	305288	.	G	A	604.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;DP=123;Dels=0.00;FS=33.389;HaplotypeScore=18.0483;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=2;MQRankSum=-7.298;QD=4.91;ReadPosRankSum=0.555;SB=-3.070e+02	GT:AD:DP:GQ:PL	0/1:68,55:123:99:634,0,1436
chrIII	305321	.	C	T	617.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=103;Dels=0.00;FS=20.852;HaplotypeScore=5.0812;MLEAC=1;MLEAF=0.500;MQ=49.01;MQ0=3;MQRankSum=-6.342;QD=5.99;ReadPosRankSum=0.327;SB=-2.230e+02	GT:AD:DP:GQ:PL	0/1:55,48:103:99:647,0,1083
chrIII	305482	.	C	A	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.279;DP=82;Dels=0.00;FS=5.699;HaplotypeScore=17.3901;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=7;MQRankSum=-3.890;QD=0.43;ReadPosRankSum=1.155;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,12:82:65:65,0,874
chrIII	305490	.	C	A	238.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;DP=86;Dels=0.00;FS=8.321;HaplotypeScore=19.1522;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=8;MQRankSum=-5.693;QD=2.77;ReadPosRankSum=2.777;SB=-9.201e+01	GT:AD:DP:GQ:PL	0/1:54,31:86:99:268,0,749
chrIII	305522	.	A	G	643.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;DP=153;Dels=0.00;FS=29.477;HaplotypeScore=10.5010;MLEAC=1;MLEAF=0.500;MQ=41.90;MQ0=18;MQRankSum=-8.516;QD=4.20;ReadPosRankSum=-1.057;SB=-2.120e+02	GT:AD:DP:GQ:PL	0/1:78,72:153:99:673,0,1167
chrIII	305548	.	A	G	615.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;DP=164;Dels=0.00;FS=34.961;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=41.47;MQ0=19;MQRankSum=-8.186;QD=3.75;ReadPosRankSum=2.490;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:86,77:164:99:645,0,1295
chrIII	305563	.	G	A	653.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DP=167;Dels=0.00;FS=25.153;HaplotypeScore=7.9648;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=15;MQRankSum=-8.525;QD=3.91;ReadPosRankSum=0.916;SB=-1.240e+02	GT:AD:DP:GQ:PL	0/1:87,80:167:99:683,0,1552
chrIII	305658	.	A	G	361.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.545;DP=149;Dels=0.00;FS=33.327;HaplotypeScore=43.9322;MLEAC=1;MLEAF=0.500;MQ=43.76;MQ0=6;MQRankSum=-4.052;QD=2.42;ReadPosRankSum=0.509;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:116,33:149:99:391,0,1695
chrIII	305662	.	T	C	798.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;DP=145;Dels=0.00;FS=29.422;HaplotypeScore=39.6050;MLEAC=1;MLEAF=0.500;MQ=44.88;MQ0=6;MQRankSum=-9.111;QD=5.50;ReadPosRankSum=0.163;SB=-2.120e+02	GT:AD:DP:GQ:PL	0/1:67,76:145:99:828,0,1187
chrIII	305705	.	G	A	188.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.794;DP=107;Dels=0.00;FS=4.539;HaplotypeScore=8.2200;MLEAC=1;MLEAF=0.500;MQ=48.06;MQ0=5;MQRankSum=-3.591;QD=1.76;ReadPosRankSum=0.547;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:82,24:107:99:218,0,1567
chrIII	305737	.	C	T	545.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;DP=97;Dels=0.00;FS=17.141;HaplotypeScore=40.2672;MLEAC=1;MLEAF=0.500;MQ=47.42;MQ0=5;MQRankSum=-7.349;QD=5.62;ReadPosRankSum=-1.650;SB=-3.007e+00	GT:AD:DP:GQ:PL	0/1:50,47:97:99:575,0,980
chrIII	305742	.	G	A	72.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DP=95;Dels=0.00;FS=9.603;HaplotypeScore=42.0292;MLEAC=1;MLEAF=0.500;MQ=47.19;MQ0=5;MQRankSum=-4.417;QD=0.76;ReadPosRankSum=-0.744;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,21:95:99:102,0,1433
chrIII	305744	.	G	A	85.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=37.7040;MLEAC=1;MLEAF=0.500;MQ=47.10;MQ0=6;MQRankSum=-3.360;QD=0.91;ReadPosRankSum=-1.014;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:69,23:93:99:115,0,1319
chrIII	305763	.	A	G	445.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DP=86;Dels=0.00;FS=5.461;HaplotypeScore=16.4424;MLEAC=1;MLEAF=0.500;MQ=46.95;MQ0=6;MQRankSum=-6.726;QD=5.17;ReadPosRankSum=-0.837;SB=-3.001e+01	GT:AD:DP:GQ:PL	0/1:44,42:86:99:475,0,849
chrIII	305770	.	G	A	74.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DP=77;Dels=0.00;FS=4.720;HaplotypeScore=28.3319;MLEAC=1;MLEAF=0.500;MQ=45.90;MQ0=6;MQRankSum=-4.741;QD=0.96;ReadPosRankSum=-0.516;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:60,17:77:99:104,0,1140
chrIII	305778	.	C	G	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DP=72;Dels=0.00;FS=9.760;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.57;MQ0=5;MQRankSum=-4.110;QD=0.22;ReadPosRankSum=0.224;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:56,16:72:46:46,0,1040
chrIII	305871	.	T	C	68.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;DP=104;Dels=0.00;FS=3.922;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=35.76;MQ0=14;MQRankSum=-2.485;QD=0.65;ReadPosRankSum=0.765;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,22:104:98:98,0,1399
chrIII	305930	.	C	T	783.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;DP=172;Dels=0.00;FS=3.852;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=42.15;MQ0=6;MQRankSum=-4.506;QD=4.55;ReadPosRankSum=-0.247;SB=-3.880e+02	GT:AD:DP:GQ:PL	0/1:112,60:172:99:813,0,1925
chrIII	306108	.	A	C	28.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.768;DP=133;Dels=0.00;FS=10.279;HaplotypeScore=18.9283;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=8;MQRankSum=-2.013;QD=0.21;ReadPosRankSum=0.748;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:105,26:133:58:58,0,891
chrIII	306132	.	G	A	124.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;DP=85;Dels=0.00;FS=32.909;HaplotypeScore=11.4647;MLEAC=1;MLEAF=0.500;MQ=45.48;MQ0=6;MQRankSum=-4.566;QD=1.46;ReadPosRankSum=0.793;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,28:85:99:154,0,778
chrIII	306171	.	G	T	92.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.749;DP=99;Dels=0.00;FS=6.779;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=36.97;MQ0=5;MQRankSum=-1.549;QD=0.93;ReadPosRankSum=-0.034;SB=-7.001e+01	GT:AD:DP:GQ:PL	0/1:74,25:99:99:122,0,1021
chrIII	306173	.	T	C	88.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;DP=99;Dels=0.00;FS=6.789;HaplotypeScore=4.9879;MLEAC=1;MLEAF=0.500;MQ=36.97;MQ0=5;MQRankSum=-1.391;QD=0.89;ReadPosRankSum=-0.134;SB=-7.501e+01	GT:AD:DP:GQ:PL	0/1:74,25:99:99:118,0,1045
chrIII	306178	.	G	A	53.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;DP=101;Dels=0.00;FS=4.846;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=36.76;MQ0=6;MQRankSum=-1.621;QD=0.52;ReadPosRankSum=-0.499;SB=-8.701e+01	GT:AD:DP:GQ:PL	0/1:74,27:101:83:83,0,1056
chrIII	306181	.	C	G	77.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;DP=104;Dels=0.00;FS=6.379;HaplotypeScore=4.1212;MLEAC=1;MLEAF=0.500;MQ=37.00;MQ0=6;MQRankSum=-1.554;QD=0.74;ReadPosRankSum=0.153;SB=-8.001e+01	GT:AD:DP:GQ:PL	0/1:76,26:104:99:107,0,1063
chrIII	306202	.	T	A	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DP=91;Dels=0.00;FS=2.275;HaplotypeScore=12.4134;MLEAC=1;MLEAF=0.500;MQ=35.91;MQ0=9;MQRankSum=-1.070;QD=0.53;ReadPosRankSum=1.540;SB=-7.401e+01	GT:AD:DP:GQ:PL	0/1:72,19:91:78:78,0,874
chrIII	306239	.	C	T	153.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;DP=97;Dels=0.00;FS=6.702;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=38.56;MQ0=9;MQRankSum=-1.067;QD=1.58;ReadPosRankSum=0.147;SB=-8.301e+01	GT:AD:DP:GQ:PL	0/1:74,23:97:99:183,0,1018
chrIII	306260	.	C	T	210.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.029;DP=96;Dels=0.00;FS=40.234;HaplotypeScore=4.9245;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=11;MQRankSum=-5.127;QD=2.19;ReadPosRankSum=2.747;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,41:96:99:240,0,1028
chrIII	306278	.	G	A	286.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.428;DP=122;Dels=0.00;FS=38.598;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=45.63;MQ0=13;MQRankSum=-6.339;QD=2.34;ReadPosRankSum=1.404;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,47:122:99:316,0,1391
chrIII	306292	.	G	A	168.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.235;DP=138;Dels=0.00;FS=45.353;HaplotypeScore=45.0143;MLEAC=1;MLEAF=0.500;MQ=45.23;MQ0=11;MQRankSum=-4.357;QD=1.22;ReadPosRankSum=-1.737;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:112,26:138:99:198,0,1777
chrIII	306309	.	G	T	212.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;DP=133;Dels=0.00;FS=20.500;HaplotypeScore=26.2665;MLEAC=1;MLEAF=0.500;MQ=45.21;MQ0=9;MQRankSum=-9.120;QD=1.59;ReadPosRankSum=-3.071;SB=-6.301e+01	GT:AD:DP:GQ:PL	0/1:79,54:133:99:242,0,1619
chrIII	306337	.	G	C	150.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=148;Dels=0.00;FS=29.032;HaplotypeScore=34.1643;MLEAC=1;MLEAF=0.500;MQ=44.18;MQ0=7;MQRankSum=-7.415;QD=1.01;ReadPosRankSum=0.076;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:116,32:148:99:180,0,1717
chrIII	306351	.	G	A	472.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;DP=144;Dels=0.00;FS=5.104;HaplotypeScore=69.0256;MLEAC=1;MLEAF=0.500;MQ=45.29;MQ0=1;MQRankSum=-10.066;QD=3.28;ReadPosRankSum=1.676;SB=-5.140e+02	GT:AD:DP:GQ:PL	0/1:69,72:144:99:502,0,1359
chrIII	306356	.	T	C	229.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=145;Dels=0.00;FS=41.713;HaplotypeScore=75.2150;MLEAC=1;MLEAF=0.500;MQ=45.45;MQ0=0;MQRankSum=-6.623;QD=1.58;ReadPosRankSum=1.178;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:110,34:145:99:259,0,1538
chrIII	306392	.	G	T	293.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.391;DP=150;Dels=0.00;FS=19.705;HaplotypeScore=40.6655;MLEAC=1;MLEAF=0.500;MQ=45.37;MQ0=2;MQRankSum=-9.858;QD=1.95;ReadPosRankSum=-0.401;SB=-5.590e+02	GT:AD:DP:GQ:PL	0/1:74,75:150:99:323,0,1562
chrIII	306409	.	C	A	209.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;DP=145;Dels=0.00;FS=52.709;HaplotypeScore=69.7059;MLEAC=1;MLEAF=0.500;MQ=45.51;MQ0=3;MQRankSum=-4.907;QD=1.44;ReadPosRankSum=-3.143;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:111,34:145:99:239,0,1624
chrIII	306412	.	C	T	394.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;DP=140;Dels=0.00;FS=29.943;HaplotypeScore=67.9438;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=3;MQRankSum=-9.243;QD=2.81;ReadPosRankSum=-3.787;SB=-4.850e+02	GT:AD:DP:GQ:PL	0/1:70,70:140:99:424,0,1510
chrIII	306441	.	G	A	215.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;DP=123;Dels=0.00;FS=53.855;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=4;MQRankSum=-3.969;QD=1.75;ReadPosRankSum=0.965;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:94,28:123:99:245,0,1598
chrIII	306483	.	T	C	183.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;DP=117;Dels=0.00;FS=9.123;HaplotypeScore=24.3457;MLEAC=1;MLEAF=0.500;MQ=46.30;MQ0=3;MQRankSum=-3.812;QD=1.56;ReadPosRankSum=2.960;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:95,22:117:99:213,0,1810
chrIII	306486	.	A	G	617.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DP=117;Dels=0.00;FS=15.327;HaplotypeScore=23.7673;MLEAC=1;MLEAF=0.500;MQ=45.79;MQ0=3;MQRankSum=-5.491;QD=5.27;ReadPosRankSum=-1.949;SB=-3.400e+02	GT:AD:DP:GQ:PL	0/1:73,43:117:99:647,0,1381
chrIII	306507	.	C	G	187.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;DP=137;Dels=0.00;FS=20.596;HaplotypeScore=9.7123;MLEAC=1;MLEAF=0.500;MQ=44.68;MQ0=1;MQRankSum=-2.613;QD=1.37;ReadPosRankSum=0.991;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:113,22:137:99:217,0,2144
chrIII	306536	.	G	A	546.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.450;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=26.5852;MLEAC=1;MLEAF=0.500;MQ=44.32;MQ0=1;MQRankSum=-3.733;QD=4.01;ReadPosRankSum=2.309;SB=-3.080e+02	GT:AD:DP:GQ:PL	0/1:96,38:136:99:576,0,1477
chrIII	306538	.	A	T	53.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;DP=134;Dels=0.00;FS=21.515;HaplotypeScore=28.1626;MLEAC=1;MLEAF=0.500;MQ=44.51;MQ0=1;MQRankSum=-2.493;QD=0.40;ReadPosRankSum=-2.431;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:117,17:134:83:83,0,2019
chrIII	306561	.	T	C	1098.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;DP=113;Dels=0.00;FS=10.547;HaplotypeScore=7.2035;MLEAC=1;MLEAF=0.500;MQ=41.40;MQ0=4;MQRankSum=2.873;QD=9.72;ReadPosRankSum=1.087;SB=-5.560e+02	GT:AD:DP:GQ:PL	0/1:35,78:113:99:1128,0,465
chrIII	306575	.	C	T	1942	filter	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9605;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=5;QD=17.50;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1975,213,0
chrIII	306731	.	A	G	367.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DP=142;Dels=0.01;FS=4.090;HaplotypeScore=24.6109;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=0;MQRankSum=-8.491;QD=2.58;ReadPosRankSum=1.192;SB=-2.360e+02	GT:AD:DP:GQ:PL	0/1:84,57:141:99:397,0,1613
chrIII	306736	.	T	G	242.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DP=137;Dels=0.00;FS=0.660;HaplotypeScore=39.4352;MLEAC=1;MLEAF=0.500;MQ=48.43;MQ0=0;MQRankSum=-8.440;QD=1.77;ReadPosRankSum=2.014;SB=-1.540e+02	GT:AD:DP:GQ:PL	0/1:84,51:137:99:272,0,1661
chrIII	306783	.	G	A	1688.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.033;DP=109;Dels=0.00;FS=32.509;HaplotypeScore=9.8931;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;MQRankSum=2.894;QD=15.49;ReadPosRankSum=-0.224;SB=-9.095e+02	GT:AD:DP:GQ:PL	1/1:13,96:109:12:1721,12,0
chrIII	306797	.	T	C	41.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;DP=90;Dels=0.00;FS=32.578;HaplotypeScore=22.7355;MLEAC=1;MLEAF=0.500;MQ=43.69;MQ0=0;MQRankSum=-4.466;QD=0.46;ReadPosRankSum=0.633;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,14:90:71:71,0,1263
chrIII	306817	.	G	A	581.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.795;DP=86;Dels=0.00;FS=47.101;HaplotypeScore=5.1758;MLEAC=1;MLEAF=0.500;MQ=41.48;MQ0=0;MQRankSum=-2.696;QD=6.76;ReadPosRankSum=0.268;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,41:86:99:611,0,935
chrIII	306835	.	A	T	129.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;DP=89;Dels=0.00;FS=36.870;HaplotypeScore=8.9538;MLEAC=1;MLEAF=0.500;MQ=40.38;MQ0=0;MQRankSum=-1.755;QD=1.45;ReadPosRankSum=1.420;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,20:89:99:159,0,1105
chrIII	306856	.	G	C	363.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DP=87;Dels=0.01;FS=4.147;HaplotypeScore=5.4503;MLEAC=1;MLEAF=0.500;MQ=41.81;MQ0=0;MQRankSum=-2.743;QD=4.17;ReadPosRankSum=2.162;SB=-1.540e+02	GT:AD:DP:GQ:PL	0/1:51,35:86:99:393,0,895
chrIII	306902	.	A	G	215.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.396;DP=107;Dels=0.00;FS=1.640;HaplotypeScore=39.4845;MLEAC=1;MLEAF=0.500;MQ=40.90;MQ0=0;MQRankSum=-4.490;QD=2.01;ReadPosRankSum=-1.569;SB=-1.800e+02	GT:AD:DP:GQ:PL	0/1:70,37:107:99:245,0,1318
chrIII	306908	.	C	T	104.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;DP=109;Dels=0.00;FS=4.882;HaplotypeScore=37.3666;MLEAC=1;MLEAF=0.500;MQ=42.36;MQ0=0;MQRankSum=-3.638;QD=0.95;ReadPosRankSum=-0.350;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:88,21:109:99:134,0,1412
chrIII	306910	.	C	T	82.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;DP=110;Dels=0.00;FS=4.830;HaplotypeScore=38.1890;MLEAC=1;MLEAF=0.500;MQ=42.18;MQ0=0;MQRankSum=-3.909;QD=0.75;ReadPosRankSum=-0.297;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,21:110:99:112,0,1431
chrIII	306920	.	A	G	194.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324;DP=121;Dels=0.00;FS=3.666;HaplotypeScore=29.0752;MLEAC=1;MLEAF=0.500;MQ=41.70;MQ0=0;MQRankSum=-5.954;QD=1.60;ReadPosRankSum=-0.880;SB=-1.730e+02	GT:AD:DP:GQ:PL	0/1:80,41:121:99:224,0,1401
chrIII	306928	.	C	A	93.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DP=136;Dels=0.00;FS=5.775;HaplotypeScore=19.2478;MLEAC=1;MLEAF=0.500;MQ=42.62;MQ0=0;MQRankSum=-4.910;QD=0.68;ReadPosRankSum=0.534;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:89,31:136:99:123,0,1518
chrIII	306967	.	T	A	613.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;DP=152;Dels=0.00;FS=1.286;HaplotypeScore=6.5536;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=0;MQRankSum=-7.175;QD=4.03;ReadPosRankSum=0.380;SB=-3.670e+02	GT:AD:DP:GQ:PL	0/1:71,81:152:99:643,0,1311
chrIII	306974	.	C	T	633.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=41.23;MQ0=0;MQRankSum=-7.530;QD=4.16;ReadPosRankSum=1.220;SB=-4.110e+02	GT:AD:DP:GQ:PL	0/1:72,80:152:99:663,0,1287
chrIII	306978	.	C	T	617.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.598;DP=163;Dels=0.00;FS=1.225;HaplotypeScore=13.3963;MLEAC=1;MLEAF=0.500;MQ=41.87;MQ0=0;MQRankSum=-7.798;QD=3.79;ReadPosRankSum=2.130;SB=-4.470e+02	GT:AD:DP:GQ:PL	0/1:79,84:163:99:647,0,1323
chrIII	306992	.	C	T	584.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;DP=156;Dels=0.00;FS=2.004;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=41.41;MQ0=0;MQRankSum=-7.860;QD=3.74;ReadPosRankSum=2.093;SB=-3.700e+02	GT:AD:DP:GQ:PL	0/1:75,81:156:99:614,0,1440
chrIII	307016	.	G	A	432.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;DP=150;Dels=0.00;FS=4.854;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=40.63;MQ0=0;MQRankSum=-7.456;QD=2.88;ReadPosRankSum=-0.773;SB=-3.430e+02	GT:AD:DP:GQ:PL	0/1:76,73:150:99:462,0,1439
chrIII	307039	.	A	T	1364	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=14.51;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1397,153,0
chrIII	307138	.	C	T	627.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;DP=72;Dels=0.00;FS=101.949;HaplotypeScore=12.4714;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=2;MQRankSum=2.997;QD=8.71;ReadPosRankSum=4.753;SB=-1.700e+02	GT:AD:DP:GQ:PL	0/1:32,40:72:99:657,0,110
chrIII	307148	.	C	T	402.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;DP=82;Dels=0.00;FS=69.629;HaplotypeScore=4.5846;MLEAC=1;MLEAF=0.500;MQ=26.76;MQ0=10;MQRankSum=4.370;QD=4.90;ReadPosRankSum=0.641;SB=-6.901e+01	GT:AD:DP:GQ:PL	0/1:51,31:82:99:432,0,359
chrIII	307162	.	T	G	190.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.942;DP=91;Dels=0.00;FS=69.140;HaplotypeScore=6.4366;MLEAC=1;MLEAF=0.500;MQ=23.04;MQ0=13;MQRankSum=3.153;QD=2.09;ReadPosRankSum=-0.921;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:71,20:91:99:220,0,563
chrIII	307165	.	A	C	197.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;DP=91;Dels=0.00;FS=70.250;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=13;MQRankSum=2.706;QD=2.16;ReadPosRankSum=-1.582;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,18:91:99:227,0,559
chrIII	307178	.	T	C	231.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.608;DP=93;Dels=0.00;FS=90.331;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=16;MQRankSum=3.685;QD=2.48;ReadPosRankSum=-1.408;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:78,15:93:99:261,0,568
chrIII	307182	.	T	A	205.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;DP=98;Dels=0.00;FS=90.431;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=17;MQRankSum=4.122;QD=2.09;ReadPosRankSum=-1.762;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,16:98:99:235,0,591
chrIII	307223	.	A	G	62.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;DP=119;Dels=0.00;FS=8.197;HaplotypeScore=36.2623;MLEAC=1;MLEAF=0.500;MQ=21.69;MQ0=24;MQRankSum=-1.838;QD=0.52;ReadPosRankSum=-0.440;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:88,31:119:92:92,0,884
chrIII	307225	.	G	A	322.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.394;DP=117;Dels=0.00;FS=70.782;HaplotypeScore=35.4736;MLEAC=1;MLEAF=0.500;MQ=21.25;MQ0=24;MQRankSum=5.081;QD=2.75;ReadPosRankSum=1.331;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,26:117:99:352,0,616
chrIII	307226	.	C	T	268.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.989;DP=118;Dels=0.00;FS=61.290;HaplotypeScore=36.2623;MLEAC=1;MLEAF=0.500;MQ=21.21;MQ0=23;MQRankSum=4.839;QD=2.27;ReadPosRankSum=1.283;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,27:118:99:298,0,622
chrIII	307228	.	T	A	309.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;DP=118;Dels=0.00;FS=64.770;HaplotypeScore=39.7255;MLEAC=1;MLEAF=0.500;MQ=21.05;MQ0=23;MQRankSum=5.346;QD=2.62;ReadPosRankSum=2.074;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,26:118:99:339,0,585
chrIII	307233	.	C	G	306.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DP=137;Dels=0.00;FS=14.399;HaplotypeScore=43.7157;MLEAC=1;MLEAF=0.500;MQ=23.20;MQ0=22;MQRankSum=0.040;QD=2.23;ReadPosRankSum=-0.452;SB=-3.601e+01	GT:AD:DP:GQ:PL	0/1:81,54:137:99:336,0,417
chrIII	307239	.	T	G	249.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;DP=143;Dels=0.00;FS=52.700;HaplotypeScore=26.0775;MLEAC=1;MLEAF=0.500;MQ=24.81;MQ0=16;MQRankSum=1.631;QD=1.74;ReadPosRankSum=2.210;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:97,45:143:99:279,0,678
chrIII	307241	.	T	C	224.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;DP=140;Dels=0.00;FS=35.103;HaplotypeScore=21.9602;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=15;MQRankSum=0.419;QD=1.60;ReadPosRankSum=1.543;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,47:140:99:254,0,767
chrIII	307245	.	T	A	197.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;DP=142;Dels=0.00;FS=40.995;HaplotypeScore=14.6882;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=14;MQRankSum=0.253;QD=1.39;ReadPosRankSum=2.178;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,48:142:99:227,0,932
chrIII	307256	.	C	G	172.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.927;DP=142;Dels=0.00;FS=49.923;HaplotypeScore=10.4088;MLEAC=1;MLEAF=0.500;MQ=26.99;MQ0=14;MQRankSum=0.644;QD=1.21;ReadPosRankSum=2.030;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,46:142:99:202,0,983
chrIII	307257	.	C	T	167.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;DP=143;Dels=0.00;FS=51.417;HaplotypeScore=9.6201;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=14;MQRankSum=0.487;QD=1.17;ReadPosRankSum=2.112;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:96,47:143:99:197,0,987
chrIII	307258	.	T	C	169.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DP=144;Dels=0.00;FS=51.694;HaplotypeScore=8.7535;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=14;MQRankSum=0.780;QD=1.17;ReadPosRankSum=2.127;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:97,47:144:99:199,0,912
chrIII	307310	.	G	A	404.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;DP=193;Dels=0.00;FS=41.224;HaplotypeScore=10.3583;MLEAC=1;MLEAF=0.500;MQ=32.99;MQ0=2;MQRankSum=2.269;QD=2.09;ReadPosRankSum=-0.742;SB=-6.601e+01	GT:AD:DP:GQ:PL	0/1:130,63:193:99:434,0,1668
chrIII	307317	.	T	C	491.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;DP=183;Dels=0.00;FS=52.098;HaplotypeScore=62.6818;MLEAC=1;MLEAF=0.500;MQ=34.32;MQ0=2;MQRankSum=3.283;QD=2.68;ReadPosRankSum=0.019;SB=-1.120e+02	GT:AD:DP:GQ:PL	0/1:126,57:183:99:521,0,1786
chrIII	307324	.	C	G	667.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;DP=171;Dels=0.00;FS=8.119;HaplotypeScore=53.3100;MLEAC=1;MLEAF=0.500;MQ=35.30;MQ0=2;MQRankSum=-3.547;QD=3.90;ReadPosRankSum=0.509;SB=-1.960e+02	GT:AD:DP:GQ:PL	0/1:103,67:171:99:697,0,1387
chrIII	307368	.	A	G	679.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.631;DP=100;Dels=0.00;FS=15.695;HaplotypeScore=13.0007;MLEAC=1;MLEAF=0.500;MQ=33.04;MQ0=6;MQRankSum=3.354;QD=6.79;ReadPosRankSum=-1.675;SB=-3.940e+02	GT:AD:DP:GQ:PL	0/1:32,65:100:99:709,0,274
chrIII	307376	.	A	T	745	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=78;Dels=0.00;FS=6.901;HaplotypeScore=6.9456;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=8;MQRankSum=-2.341;QD=9.55;ReadPosRankSum=2.232;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:87:778,87,0
chrIII	307421	.	G	A	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;DP=51;Dels=0.00;FS=1.412;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=21.37;MQ0=6;MQRankSum=-2.329;QD=0.53;ReadPosRankSum=0.433;SB=0.205	GT:AD:DP:GQ:PL	0/1:29,22:51:57:57,0,325
chrIII	307432	.	A	G	272.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;DP=50;Dels=0.00;FS=1.450;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=20.19;MQ0=6;MQRankSum=2.136;QD=5.44;ReadPosRankSum=-1.898;SB=0.965	GT:AD:DP:GQ:PL	0/1:23,27:50:86:302,0,86
chrIII	307455	.	T	A	172.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;DP=46;Dels=0.00;FS=5.550;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=19.10;MQ0=7;MQRankSum=2.913;QD=3.74;ReadPosRankSum=0.512;SB=-6.433e-03	GT:AD:DP:GQ:PL	0/1:32,14:46:99:202,0,171
chrIII	307456	.	C	T	105.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;DP=47;Dels=0.00;FS=3.510;HaplotypeScore=3.6417;MLEAC=1;MLEAF=0.500;MQ=18.96;MQ0=7;MQRankSum=3.020;QD=2.23;ReadPosRankSum=0.581;SB=-6.485e-03	GT:AD:DP:GQ:PL	0/1:33,14:47:99:135,0,170
chrIII	307465	.	C	T	163.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;DP=50;Dels=0.00;FS=3.318;HaplotypeScore=6.2621;MLEAC=1;MLEAF=0.500;MQ=18.75;MQ0=8;MQRankSum=2.748;QD=3.26;ReadPosRankSum=0.326;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,13:50:99:193,0,191
chrIII	307486	.	T	C	66.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=8;MQRankSum=2.243;QD=1.40;ReadPosRankSum=-0.226;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,8:47:96:96,0,259
chrIII	307488	.	C	G	58.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=22.05;MQ0=8;MQRankSum=2.417;QD=1.26;ReadPosRankSum=-0.591;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,8:46:88:88,0,225
chrIII	307489	.	C	T	72.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=22.05;MQ0=8;MQRankSum=2.345;QD=1.57;ReadPosRankSum=-0.662;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,8:46:99:102,0,230
chrIII	307547	.	A	G	52.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.526;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7332;MLEAC=1;MLEAF=0.500;MQ=20.24;MQ0=15;MQRankSum=-0.842;QD=0.96;ReadPosRankSum=-1.413;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,17:54:82:82,0,248
chrIII	307548	.	C	T	55.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7332;MLEAC=1;MLEAF=0.500;MQ=20.24;MQ0=15;MQRankSum=-0.785;QD=1.02;ReadPosRankSum=-1.213;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,17:54:85:85,0,243
chrIII	307582	.	A	G	97.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;DP=63;Dels=0.00;FS=18.773;HaplotypeScore=31.0866;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=16;MQRankSum=0.802;QD=1.54;ReadPosRankSum=2.600;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:41,22:63:99:127,0,269
chrIII	307583	.	G	A	285.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.687;DP=63;Dels=0.00;FS=5.188;HaplotypeScore=31.0866;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=16;MQRankSum=1.221;QD=4.52;ReadPosRankSum=2.012;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:23,40:63:99:315,0,101
chrIII	307589	.	C	T	107.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DP=73;Dels=0.00;FS=43.205;HaplotypeScore=50.0193;MLEAC=1;MLEAF=0.500;MQ=18.51;MQ0=18;MQRankSum=0.035;QD=1.47;ReadPosRankSum=0.280;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:42,30:73:99:137,0,243
chrIII	307595	.	A	T	507	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.760;DP=77;Dels=0.00;FS=7.414;HaplotypeScore=63.5446;MLEAC=2;MLEAF=1.00;MQ=20.60;MQ0=18;MQRankSum=2.013;QD=6.58;ReadPosRankSum=2.077;SB=-2.803e+01	GT:AD:DP:GQ:PL	1/1:16,61:77:44:540,44,0
chrIII	307608	.	G	C	211.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.373;DP=89;Dels=0.00;FS=58.738;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=11;MQRankSum=-0.808;QD=2.37;ReadPosRankSum=-0.290;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:41,48:89:99:241,0,273
chrIII	307685	.	A	C	225.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DP=110;Dels=0.00;FS=29.146;HaplotypeScore=41.7428;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=8;MQRankSum=-2.013;QD=2.05;ReadPosRankSum=1.679;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,41:110:99:255,0,551
chrIII	307686	.	G	A	232.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=42.5315;MLEAC=1;MLEAF=0.500;MQ=27.95;MQ0=8;MQRankSum=-1.292;QD=2.19;ReadPosRankSum=1.686;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,34:106:99:262,0,538
chrIII	307690	.	G	A	229.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;DP=108;Dels=0.00;FS=27.418;HaplotypeScore=59.7987;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=9;MQRankSum=-1.582;QD=2.12;ReadPosRankSum=2.064;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,42:108:99:259,0,523
chrIII	307696	.	C	T	181.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.770;DP=102;Dels=0.00;FS=40.547;HaplotypeScore=48.9297;MLEAC=1;MLEAF=0.500;MQ=26.65;MQ0=9;MQRankSum=-1.485;QD=1.77;ReadPosRankSum=1.991;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,39:102:99:211,0,474
chrIII	307697	.	G	A	242.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DP=104;Dels=0.00;FS=31.579;HaplotypeScore=41.7097;MLEAC=1;MLEAF=0.500;MQ=26.19;MQ0=10;MQRankSum=-0.079;QD=2.33;ReadPosRankSum=3.262;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,30:104:99:272,0,372
chrIII	307722	.	A	G	118.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;DP=76;Dels=0.00;FS=14.993;HaplotypeScore=23.4275;MLEAC=1;MLEAF=0.500;MQ=22.91;MQ0=15;MQRankSum=-0.300;QD=1.55;ReadPosRankSum=4.018;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,21:76:99:148,0,253
chrIII	307768	.	A	C	35.12	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;DP=41;Dels=0.00;FS=10.098;HaplotypeScore=9.3672;MLEAC=1;MLEAF=0.500;MQ=16.71;MQ0=14;MQRankSum=0.946;QD=0.86;ReadPosRankSum=-1.480;SB=-1.140e-01	GT:AD:DP:GQ:PL	0/1:26,15:41:13:65,0,13
chrIII	314252	.	T	C	48.97	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=1;QD=4.08;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,12:12:9:81,9,0
chrIII	314282	.	G	A	118.13	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.81;MQ0=4;QD=5.14;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:18:151,18,0
chrIII	314321	.	A	T	120.13	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=3;QD=5.46;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:18:153,18,0
chrIII	315701	.	C	T	672	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.655;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=9;MQRankSum=1.655;QD=12.44;ReadPosRankSum=-1.732;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:1,53:54:87:705,87,0
chrIII	315826	.	T	C	158.22	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.038;DP=172;Dels=0.00;FS=26.540;HaplotypeScore=116.3936;MLEAC=1;MLEAF=0.500;MQ=24.19;MQ0=7;MQRankSum=6.046;QD=0.92;ReadPosRankSum=-2.260;SB=-3.229e+00	GT:AD:DP:GQ:PL	0/1:44,128:172:10:188,0,10
chrIII	315827	.	G	A	174.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;DP=171;Dels=0.00;FS=26.930;HaplotypeScore=116.3936;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=7;MQRankSum=5.405;QD=1.02;ReadPosRankSum=-3.148;SB=-3.018e+00	GT:AD:DP:GQ:PL	0/1:43,128:171:34:204,0,34
chrIII	315834	.	T	C	223.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;DP=182;Dels=0.00;FS=27.765;HaplotypeScore=9.0373;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=10;MQRankSum=6.024;QD=1.23;ReadPosRankSum=-2.836;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:46,136:182:58:253,0,58
chrIII	315841	.	A	T	269.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.329;DP=163;Dels=0.00;FS=27.972;HaplotypeScore=8.5298;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=12;MQRankSum=6.378;QD=1.65;ReadPosRankSum=1.232;SB=-3.018e+00	GT:AD:DP:GQ:PL	0/1:41,114:163:35:299,0,35
chrIII	315843	.	T	C	234.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;DP=168;Dels=0.00;FS=22.023;HaplotypeScore=10.1072;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=12;MQRankSum=6.509;QD=1.39;ReadPosRankSum=3.814;SB=-3.015e+00	GT:AD:DP:GQ:PL	0/1:57,111:168:99:264,0,111
chrIII	315844	.	G	A	246.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.930;DP=168;Dels=0.00;FS=22.023;HaplotypeScore=25.5721;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=12;MQRankSum=6.619;QD=1.46;ReadPosRankSum=1.698;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:57,111:168:82:276,0,82
chrIII	315845	.	G	A	250.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.126;DP=169;Dels=0.00;FS=22.023;HaplotypeScore=29.4095;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=12;MQRankSum=7.092;QD=1.48;ReadPosRankSum=0.728;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:57,111:169:99:280,0,108
chrIII	315847	.	G	A	230.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.190;DP=169;Dels=0.00;FS=22.135;HaplotypeScore=29.4095;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=12;MQRankSum=6.896;QD=1.36;ReadPosRankSum=0.747;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,112:169:99:260,0,199
chrIII	315851	.	T	G	228.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;DP=168;Dels=0.00;FS=22.023;HaplotypeScore=31.6953;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=12;MQRankSum=7.225;QD=1.36;ReadPosRankSum=-0.391;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,111:168:99:258,0,191
chrIII	315854	.	C	A	232.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.055;DP=169;Dels=0.00;FS=28.617;HaplotypeScore=23.5193;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=12;MQRankSum=4.382;QD=1.37;ReadPosRankSum=-0.580;SB=1.11	GT:AD:DP:GQ:PL	0/1:40,111:169:99:262,0,173
chrIII	315857	.	T	C	223.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.966;DP=173;Dels=0.00;FS=20.685;HaplotypeScore=34.1889;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=12;MQRankSum=7.042;QD=1.29;ReadPosRankSum=-0.897;SB=-6.511e-03	GT:AD:DP:GQ:PL	0/1:62,111:173:99:253,0,190
chrIII	315859	.	A	C	210.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;DP=173;Dels=0.00;FS=20.685;HaplotypeScore=33.2311;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=12;MQRankSum=7.177;QD=1.21;ReadPosRankSum=-4.181;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,111:173:99:240,0,234
chrIII	315860	.	T	A	219.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;DP=175;Dels=0.00;FS=20.199;HaplotypeScore=34.8085;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=12;MQRankSum=6.507;QD=1.25;ReadPosRankSum=-3.897;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,111:175:99:249,0,279
chrIII	315864	.	G	T	230.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.927;DP=201;Dels=0.00;FS=23.495;HaplotypeScore=34.8085;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=12;MQRankSum=6.832;QD=1.14;ReadPosRankSum=-6.350;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:62,139:201:99:260,0,282
chrIII	315871	.	G	A	280.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;DP=195;Dels=0.00;FS=24.616;HaplotypeScore=52.2979;MLEAC=1;MLEAF=0.500;MQ=24.62;MQ0=10;MQRankSum=6.872;QD=1.44;ReadPosRankSum=-7.867;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:56,139:195:99:310,0,277
chrIII	315881	.	A	T	179.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;DP=79;Dels=0.00;FS=7.190;HaplotypeScore=50.9693;MLEAC=1;MLEAF=0.500;MQ=21.88;MQ0=9;MQRankSum=1.000;QD=2.27;ReadPosRankSum=4.091;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,16:79:99:209,0,114
chrIII	315884	.	A	G	217.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.156;DP=75;Dels=0.00;FS=13.655;HaplotypeScore=43.6716;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=8;MQRankSum=-2.597;QD=2.89;ReadPosRankSum=1.000;SB=-5.401e+01	GT:AD:DP:GQ:PL	0/1:37,38:75:99:247,0,133
chrIII	315903	.	A	C	171.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;DP=77;Dels=0.00;FS=10.474;HaplotypeScore=24.4785;MLEAC=1;MLEAF=0.500;MQ=22.84;MQ0=8;MQRankSum=2.557;QD=2.22;ReadPosRankSum=2.141;SB=-6.516e-03	GT:AD:DP:GQ:PL	0/1:22,16:77:63:201,0,63
chrIII	315909	.	A	T	521	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=80;Dels=0.00;FS=8.573;HaplotypeScore=16.6469;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=7;MQRankSum=1.636;QD=6.51;ReadPosRankSum=1.684;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:66:554,66,0
chrIII	315930	.	G	A	405	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.7716;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=6.53;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,30:62:51:438,51,0
chrIII	315932	.	A	C	415	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=17.5794;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=0;QD=6.69;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:54:448,54,0
chrIII	315934	.	T	G	16.11	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;DP=66;Dels=0.00;FS=80.688;HaplotypeScore=18.5752;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=0;MQRankSum=3.055;QD=0.24;ReadPosRankSum=-1.719;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,38:66:46:46,0,281
chrIII	315941	.	G	A	82.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;DP=70;Dels=0.00;FS=120.367;HaplotypeScore=29.3141;MLEAC=1;MLEAF=0.500;MQ=26.27;MQ0=0;MQRankSum=0.460;QD=1.17;ReadPosRankSum=-6.469;SB=-2.995e+00	GT:AD:DP:GQ:PL	0/1:24,46:70:99:112,0,215
chrIII	315942	.	A	G	173.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.162;DP=75;Dels=0.00;FS=172.019;HaplotypeScore=30.4708;MLEAC=1;MLEAF=0.500;MQ=26.04;MQ0=0;MQRankSum=-0.145;QD=2.31;ReadPosRankSum=5.815;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:56,19:75:99:203,0,133
chrIII	315950	.	G	A	209.34	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DP=49;Dels=0.00;FS=32.959;HaplotypeScore=50.2109;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=0;MQRankSum=3.440;QD=4.27;ReadPosRankSum=0.440;SB=-3.893e+02	GT:AD:DP:GQ:PL	0/1:12,36:49:8:239,0,8
chrIII	315951	.	C	A	265.05	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=49.2530;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=0;QD=5.52;SB=-4.261e+02	GT:AD:DP:GQ:PL	1/1:0,36:48:33:298,33,0
chrIII	315956	.	C	A	203.06	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;DP=60;Dels=0.00;FS=120.220;HaplotypeScore=48.8371;MLEAC=1;MLEAF=0.500;MQ=23.77;MQ0=5;MQRankSum=0.134;QD=3.38;ReadPosRankSum=3.827;SB=-3.071e+00	GT:AD:DP:GQ:PL	0/1:26,21:60:16:233,0,16
chrIII	315957	.	G	A	202.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.817;DP=68;Dels=0.00;FS=137.869;HaplotypeScore=51.9918;MLEAC=1;MLEAF=0.500;MQ=22.96;MQ0=6;MQRankSum=0.981;QD=2.97;ReadPosRankSum=2.961;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:40,23:68:35:232,0,35
chrIII	315966	.	A	G	231.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;DP=100;Dels=0.00;FS=195.873;HaplotypeScore=22.7457;MLEAC=1;MLEAF=0.500;MQ=22.06;MQ0=10;MQRankSum=2.767;QD=2.31;ReadPosRankSum=2.373;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:73,27:100:99:261,0,232
chrIII	315989	.	C	G	63.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;DP=144;Dels=0.00;FS=182.828;HaplotypeScore=42.4797;MLEAC=1;MLEAF=0.500;MQ=22.71;MQ0=13;MQRankSum=0.951;QD=0.44;ReadPosRankSum=1.904;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:115,26:144:93:93,0,736
chrIII	315990	.	G	A	758.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.810;DP=145;Dels=0.00;FS=65.086;HaplotypeScore=42.4797;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=13;MQRankSum=-2.557;QD=5.23;ReadPosRankSum=-1.329;SB=-4.390e+02	GT:AD:DP:GQ:PL	0/1:48,96:145:75:788,0,75
chrIII	316056	.	G	A	813.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;DP=255;Dels=0.00;FS=43.970;HaplotypeScore=66.2055;MLEAC=1;MLEAF=0.500;MQ=26.21;MQ0=5;MQRankSum=0.483;QD=3.19;ReadPosRankSum=2.514;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:176,79:255:99:843,0,1817
chrIII	316060	.	C	T	519.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;DP=256;Dels=0.00;FS=34.592;HaplotypeScore=61.8869;MLEAC=1;MLEAF=0.500;MQ=26.40;MQ0=5;MQRankSum=1.484;QD=2.03;ReadPosRankSum=-1.355;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:201,55:256:99:549,0,2158
chrIII	316065	.	G	A	2334.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=264;Dels=0.02;FS=34.399;HaplotypeScore=62.3032;MLEAC=1;MLEAF=0.500;MQ=26.85;MQ0=4;MQRankSum=3.113;QD=8.84;ReadPosRankSum=-0.744;SB=-9.828e+02	GT:AD:DP:GQ:PL	0/1:90,169:260:99:2364,0,564
chrIII	316095	.	T	G	2797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.594;DP=220;Dels=0.00;FS=20.404;HaplotypeScore=49.2198;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=3;MQRankSum=4.823;QD=12.71;ReadPosRankSum=7.091;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:37,183:220:99:2830,262,0
chrIII	316158	.	C	A	767	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.932;DP=51;Dels=0.00;FS=2.404;HaplotypeScore=64.8138;MLEAC=2;MLEAF=1.00;MQ=23.98;MQ0=0;MQRankSum=2.324;QD=15.04;ReadPosRankSum=3.786;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:6,45:51:87:800,87,0
chrIII	316159	.	C	T	733	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.926;DP=50;Dels=0.00;FS=2.428;HaplotypeScore=64.8138;MLEAC=2;MLEAF=1.00;MQ=24.16;MQ0=0;MQRankSum=2.762;QD=14.66;ReadPosRankSum=3.926;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:6,44:50:87:766,87,0
chrIII	316164	.	A	G	60.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;DP=60;Dels=0.00;FS=12.106;HaplotypeScore=61.3044;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=0;MQRankSum=-1.681;QD=1.00;ReadPosRankSum=0.207;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,7:60:90:90,0,99
chrIII	316167	.	T	C	510.18	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;DP=83;Dels=0.00;FS=11.253;HaplotypeScore=60.2535;MLEAC=1;MLEAF=0.500;MQ=26.53;MQ0=0;MQRankSum=2.774;QD=6.15;ReadPosRankSum=0.371;SB=-9.819e+01	GT:AD:DP:GQ:PL	0/1:10,73:83:11:540,0,11
chrIII	316174	.	A	T	1474	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=107;Dels=0.00;FS=44.722;HaplotypeScore=17.6733;MLEAC=2;MLEAF=1.00;MQ=26.81;MQ0=1;MQRankSum=2.689;QD=13.78;ReadPosRankSum=0.374;SB=-9.265e-03	GT:AD:DP:GQ:PL	1/1:16,89:107:35:1507,35,0
chrIII	316221	.	G	A	296.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DP=111;Dels=0.00;FS=45.047;HaplotypeScore=10.3877;MLEAC=1;MLEAF=0.500;MQ=26.43;MQ0=5;MQRankSum=-0.991;QD=2.67;ReadPosRankSum=-2.346;SB=-1.810e+02	GT:AD:DP:GQ:PL	0/1:71,38:111:99:326,0,844
chrIII	316223	.	A	G	1461	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;DP=113;Dels=0.00;FS=6.096;HaplotypeScore=12.3331;MLEAC=2;MLEAF=1.00;MQ=26.83;MQ0=5;MQRankSum=1.114;QD=12.93;ReadPosRankSum=3.972;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:10,103:113:99:1494,141,0
chrIII	316262	.	T	A	70.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.383;DP=78;Dels=0.00;FS=34.971;HaplotypeScore=26.9691;MLEAC=1;MLEAF=0.500;MQ=25.30;MQ0=7;MQRankSum=2.383;QD=0.90;ReadPosRankSum=-5.100;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:49,29:78:99:100,0,569
chrIII	316278	.	C	T	77.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DP=49;Dels=0.02;FS=3.130;HaplotypeScore=32.1781;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=2;MQRankSum=1.519;QD=1.57;ReadPosRankSum=1.468;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:36,12:48:99:107,0,300
chrIII	316279	.	A	G	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;DP=50;Dels=0.02;FS=1.794;HaplotypeScore=32.1781;MLEAC=1;MLEAF=0.500;MQ=21.06;MQ0=2;MQRankSum=1.769;QD=0.46;ReadPosRankSum=2.471;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:43,6:49:53:53,0,347
chrIII	316296	.	G	A	62.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DP=49;Dels=0.02;FS=1.654;HaplotypeScore=46.6016;MLEAC=1;MLEAF=0.500;MQ=19.13;MQ0=1;MQRankSum=-1.538;QD=1.27;ReadPosRankSum=-1.927;SB=-4.101e+01	GT:AD:DP:GQ:PL	0/1:20,12:48:92:92,0,190
chrIII	316311	.	A	G	277.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DP=51;Dels=0.00;FS=1.408;HaplotypeScore=19.1304;MLEAC=1;MLEAF=0.500;MQ=18.97;MQ0=2;MQRankSum=-0.577;QD=5.43;ReadPosRankSum=-0.872;SB=-1.550e+02	GT:AD:DP:GQ:PL	0/1:14,37:51:54:307,0,54
chrIII	316313	.	T	C	178.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;DP=55;Dels=0.02;FS=1.255;HaplotypeScore=18.1552;MLEAC=1;MLEAF=0.500;MQ=19.08;MQ0=3;MQRankSum=-1.179;QD=3.24;ReadPosRankSum=-0.255;SB=-1.289e+02	GT:AD:DP:GQ:PL	0/1:25,29:54:99:208,0,173
chrIII	316326	.	G	C	75.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;DP=61;Dels=0.00;FS=8.402;HaplotypeScore=37.0687;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=3;MQRankSum=-1.701;QD=1.23;ReadPosRankSum=0.177;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,13:61:99:105,0,250
chrIII	316340	.	T	C	101.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.034;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=16.5831;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=4;MQRankSum=0.360;QD=1.23;ReadPosRankSum=-0.257;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:62,20:82:99:131,0,512
chrIII	316343	.	G	A	102.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=15.0445;MLEAC=1;MLEAF=0.500;MQ=22.88;MQ0=4;MQRankSum=-0.011;QD=1.19;ReadPosRankSum=0.223;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:65,21:86:99:132,0,538
chrIII	316362	.	T	G	339.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304;DP=111;Dels=0.00;FS=13.063;HaplotypeScore=35.6303;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=4;MQRankSum=3.590;QD=3.05;ReadPosRankSum=2.252;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,37:111:99:369,0,575
chrIII	316372	.	G	A	490.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;DP=128;Dels=0.01;FS=13.605;HaplotypeScore=57.8240;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=3;MQRankSum=0.553;QD=3.83;ReadPosRankSum=-0.422;SB=-1.090e+02	GT:AD:DP:GQ:PL	0/1:72,55:127:99:520,0,741
chrIII	316396	.	A	G	624.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;DP=146;Dels=0.00;FS=24.631;HaplotypeScore=13.5818;MLEAC=1;MLEAF=0.500;MQ=29.21;MQ0=4;MQRankSum=1.222;QD=4.27;ReadPosRankSum=1.676;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:87,55:146:99:654,0,770
chrIII	316421	.	T	A	456.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;DP=160;Dels=0.00;FS=4.712;HaplotypeScore=81.7918;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=2;MQRankSum=2.839;QD=2.85;ReadPosRankSum=2.198;SB=-1.030e+02	GT:AD:DP:GQ:PL	0/1:109,51:160:99:486,0,1019
chrIII	316446	.	T	C	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;DP=128;Dels=0.00;FS=38.784;HaplotypeScore=48.9818;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=2;MQRankSum=1.563;QD=0.18;ReadPosRankSum=2.394;SB=-3.786e-03	GT:AD:DP:GQ:PL	0/1:115,11:128:53:53,0,943
chrIII	316447	.	G	C	360.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.950;DP=124;Dels=0.00;FS=15.947;HaplotypeScore=48.7971;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=2;MQRankSum=1.247;QD=2.90;ReadPosRankSum=2.540;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,44:124:99:390,0,525
chrIII	316449	.	G	A	385.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;DP=120;Dels=0.00;FS=35.023;HaplotypeScore=46.1811;MLEAC=1;MLEAF=0.500;MQ=28.09;MQ0=1;MQRankSum=-2.532;QD=3.21;ReadPosRankSum=3.096;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:52,68:120:99:415,0,503
chrIII	316472	.	G	A	338.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DP=76;Dels=0.01;FS=41.012;HaplotypeScore=51.7914;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=4;MQRankSum=-3.885;QD=4.45;ReadPosRankSum=-0.278;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,55:75:99:368,0,259
chrIII	316481	.	A	G	223.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;DP=74;Dels=0.00;FS=11.225;HaplotypeScore=41.8804;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=5;MQRankSum=1.277;QD=3.01;ReadPosRankSum=-1.546;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,28:74:99:253,0,274
chrIV	231	.	A	G	45.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=11;Dels=0.00;FS=7.782;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.75;MQ0=4;MQRankSum=0.736;QD=4.18;ReadPosRankSum=0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,9:11:9:78,9,0
chrIV	294	.	T	C	151.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=2;MQRankSum=0.754;QD=7.95;ReadPosRankSum=2.060;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:8,11:19:78:181,0,78
chrIV	328	.	T	C	100.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;DP=32;Dels=0.00;FS=3.010;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=17.08;MQ0=16;MQRankSum=2.332;QD=3.13;ReadPosRankSum=-1.030;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:26,6:32:80:130,0,80
chrIV	344	.	C	T	103.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;DP=42;Dels=0.00;FS=9.103;HaplotypeScore=16.7799;MLEAC=1;MLEAF=0.500;MQ=16.58;MQ0=21;MQRankSum=2.141;QD=2.45;ReadPosRankSum=-1.518;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,6:42:79:133,0,79
chrIV	348	.	A	G	53.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=41;Dels=0.00;FS=5.842;HaplotypeScore=18.9709;MLEAC=1;MLEAF=0.500;MQ=15.42;MQ0=23;MQRankSum=0.962;QD=1.29;ReadPosRankSum=-2.095;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,4:41:53:83,0,53
chrIV	644	.	C	A	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.036;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.95;MQ0=47;MQRankSum=1.447;QD=0.47;ReadPosRankSum=-1.133;SB=1.24	GT:AD:DP:GQ:PL	1/1:53,4:57:6:58,6,0
chrIV	685	.	G	C	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.203;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.0985;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=33;MQRankSum=-0.053;QD=0.53;ReadPosRankSum=2.468;SB=1.24	GT:AD:DP:GQ:PL	1/1:25,24:49:6:57,6,0
chrIV	691	.	C	A	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.813;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.0985;MLEAC=2;MLEAF=1.00;MQ=12.78;MQ0=30;MQRankSum=1.473;QD=0.56;ReadPosRankSum=1.926;SB=1.24	GT:AD:DP:GQ:PL	1/1:41,5:46:6:57,6,0
chrIV	692	.	T	G	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.993;DP=46;Dels=0.00;FS=3.310;HaplotypeScore=6.0985;MLEAC=2;MLEAF=1.00;MQ=12.78;MQ0=30;MQRankSum=0.150;QD=0.47;ReadPosRankSum=1.927;SB=1.24	GT:AD:DP:GQ:PL	1/1:37,8:46:6:53,6,0
chrIV	697	.	C	T	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=5.3645;MLEAC=2;MLEAF=1.00;MQ=14.92;MQ0=19;MQRankSum=-0.386;QD=0.78;ReadPosRankSum=0.386;SB=1.24	GT:AD:DP:GQ:PL	1/1:25,8:33:6:57,6,0
chrIV	1237	.	C	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.52;MQ0=67;QD=0.17;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:67,3:70:6:43,6,0
chrIV	1238	.	G	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.52;MQ0=67;QD=0.17;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:67,3:70:6:43,6,0
chrIV	1244	.	C	T	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.95;MQ0=67;QD=0.17;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:67,5:72:6:43,6,0
chrIV	1254	.	G	A	39.97	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.95;MQ0=67;QD=0.56;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:66,6:72:9:72,9,0
chrIV	1264	.	G	A	40.97	filter	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.17;MQ0=63;QD=0.59;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:61,8:69:9:73,9,0
chrIV	1276	.	C	A	36.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.24;MQ0=63;QD=0.53;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:62,8:70:9:69,9,0
chrIV	1280	.	G	A	40.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.24;MQ0=63;MQRankSum=0.742;QD=0.59;ReadPosRankSum=0.742;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:64,6:70:9:73,9,0
chrIV	1284	.	C	T	40.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.29;MQ0=62;MQRankSum=0.742;QD=0.59;ReadPosRankSum=0.742;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:62,6:69:9:73,9,0
chrIV	1302	.	G	C	39.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.65;MQ0=56;MQRankSum=1.067;QD=0.62;ReadPosRankSum=0.572;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:58,6:64:9:72,9,0
chrIV	1304	.	G	C	37.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.067;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.60;MQ0=57;MQRankSum=1.067;QD=0.58;ReadPosRankSum=0.572;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:58,6:65:9:70,9,0
chrIV	1311	.	C	A	40.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.818;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.09;MQ0=59;MQRankSum=0.546;QD=0.59;ReadPosRankSum=-0.296;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:61,8:69:9:73,9,0
chrIV	1326	.	C	A	14.91	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.676;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=8.64;MQ0=57;MQRankSum=0.851;QD=0.22;ReadPosRankSum=-0.676;SB=1.32	GT:AD:DP:GQ:PL	1/1:61,5:67:6:46,6,0
chrIV	1332	.	G	C	17.84	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7581;MLEAC=2;MLEAF=1.00;MQ=8.64;MQ0=57;QD=0.27;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:55,10:67:6:49,6,0
chrIV	1336	.	G	T	19.81	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.7581;MLEAC=2;MLEAF=1.00;MQ=8.13;MQ0=54;MQRankSum=0.361;QD=0.31;ReadPosRankSum=-1.159;SB=1.24	GT:AD:DP:GQ:PL	1/1:59,4:63:6:51,6,0
chrIV	1612	.	T	C	130.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=16;Dels=0.00;FS=9.792;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.69;MQ0=3;MQRankSum=0.540;QD=8.13;ReadPosRankSum=2.392;SB=-5.875e+01	GT:AD:DP:GQ:PL	0/1:7,9:16:27:160,0,27
chrIV	1633	.	T	G	135.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170;DP=23;Dels=0.00;FS=2.003;HaplotypeScore=9.8467;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=3;MQRankSum=1.992;QD=5.88;ReadPosRankSum=2.445;SB=-4.001e+01	GT:AD:DP:GQ:PL	0/1:7,11:23:2:163,0,2
chrIV	1635	.	G	T	133.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;DP=23;Dels=0.00;FS=4.320;HaplotypeScore=5.9676;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=3;MQRankSum=1.140;QD=5.78;ReadPosRankSum=1.823;SB=-5.788e+01	GT:AD:DP:GQ:PL	0/1:12,11:23:52:163,0,52
chrIV	1647	.	C	T	133.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.039;DP=23;Dels=0.00;FS=4.320;HaplotypeScore=3.9760;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=3;MQRankSum=1.292;QD=5.78;ReadPosRankSum=-0.304;SB=-5.688e+01	GT:AD:DP:GQ:PL	0/1:12,11:23:49:163,0,49
chrIV	1730	.	G	A	53.97	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=7.1946;MLEAC=2;MLEAF=1.00;MQ=18.90;MQ0=3;QD=3.37;SB=-2.847e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:9:86,9,0
chrIV	1843	.	G	A	63.51	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=2.35;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,26:27:12:96,12,0
chrIV	2008	.	T	G	475	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=3;QD=11.05;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:1,42:43:57:508,57,0
chrIV	2009	.	A	G	454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;DP=43;Dels=0.00;FS=26.937;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=3;MQRankSum=2.824;QD=10.56;ReadPosRankSum=-0.462;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:4,39:43:54:487,54,0
chrIV	2035	.	G	T	139.54	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=34;Dels=0.00;FS=19.402;HaplotypeScore=2.7997;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=6;MQRankSum=1.937;QD=4.10;ReadPosRankSum=-0.492;SB=-3.550e+00	GT:AD:DP:GQ:PL	1/1:9,25:34:2:169,2,0
chrIV	2046	.	T	G	83.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=33;Dels=0.00;FS=17.621;HaplotypeScore=2.7997;MLEAC=1;MLEAF=0.500;MQ=20.32;MQ0=8;MQRankSum=1.270;QD=2.52;ReadPosRankSum=1.524;SB=-1.756e-01	GT:AD:DP:GQ:PL	0/1:14,18:33:11:113,0,11
chrIV	2060	.	G	C	83.22	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;DP=24;Dels=0.00;FS=22.304;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=7;MQRankSum=1.642;QD=3.47;ReadPosRankSum=-0.736;SB=-2.588e+00	GT:AD:DP:GQ:PL	0/1:10,14:24:10:113,0,10
chrIV	2062	.	C	T	91.18	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DP=25;Dels=0.00;FS=11.990;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=21.32;MQ0=8;MQRankSum=2.205;QD=3.65;ReadPosRankSum=-1.575;SB=-2.939e+01	GT:AD:DP:GQ:PL	0/1:11,14:25:11:121,0,11
chrIV	2066	.	G	T	67.09	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=26;Dels=0.00;FS=23.096;HaplotypeScore=2.9849;MLEAC=1;MLEAF=0.500;MQ=22.15;MQ0=8;MQRankSum=2.708;QD=2.58;ReadPosRankSum=-1.221;SB=-1.644e+00	GT:AD:DP:GQ:PL	0/1:12,14:26:14:97,0,14
chrIV	2072	.	T	C	43.04	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;DP=22;Dels=0.00;FS=19.590;HaplotypeScore=2.9849;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=8;MQRankSum=1.909;QD=1.96;ReadPosRankSum=-0.636;SB=1.72	GT:AD:DP:GQ:PL	0/1:12,10:22:18:73,0,18
chrIV	2076	.	G	A	42.05	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DP=22;Dels=0.00;FS=18.543;HaplotypeScore=4.7700;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=8;MQRankSum=1.466;QD=1.91;ReadPosRankSum=0.231;SB=0.588	GT:AD:DP:GQ:PL	0/1:12,9:22:17:72,0,17
chrIV	2087	.	A	G	65.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DP=19;Dels=0.00;FS=12.632;HaplotypeScore=4.9670;MLEAC=1;MLEAF=0.500;MQ=21.97;MQ0=7;MQRankSum=2.262;QD=3.43;ReadPosRankSum=0.566;SB=0.945	GT:AD:DP:GQ:PL	0/1:10,8:19:11:95,0,11
chrIV	2112	.	T	C	65.07	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.9637;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=7;MQRankSum=-0.348;QD=3.83;ReadPosRankSum=0.000;SB=-2.710e+01	GT:AD:DP:GQ:PL	0/1:5,12:17:15:95,0,15
chrIV	2135	.	G	A	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.72;MQ0=6;QD=1.52;SB=-3.151e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:6:51,6,0
chrIV	2151	.	C	T	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=13;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.14;MQ0=5;MQRankSum=-0.747;QD=1.68;ReadPosRankSum=0.747;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:1,12:13:6:53,6,0
chrIV	2152	.	T	G	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=5;MQRankSum=-0.751;QD=1.77;ReadPosRankSum=0.751;SB=-2.851e+01	GT:AD:DP:GQ:PL	1/1:1,13:14:6:56,6,0
chrIV	2156	.	C	A	66.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;DP=25;Dels=0.00;FS=5.315;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=4;MQRankSum=0.714;QD=2.66;ReadPosRankSum=-0.306;SB=-6.526e+01	GT:AD:DP:GQ:PL	1/1:1,22:25:12:99,12,0
chrIV	2228	.	A	T	2714	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=22.07;SB=-1.392e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2747,297,0
chrIV	2230	.	T	C	2685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;MQRankSum=-1.155;QD=21.31;ReadPosRankSum=1.705;SB=-1.497e+03	GT:AD:DP:GQ:PL	1/1:1,125:126:99:2718,297,0
chrIV	2306	.	A	G	1356.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.4054;MLEAC=1;MLEAF=0.500;MQ=35.57;MQ0=0;MQRankSum=4.329;QD=12.67;ReadPosRankSum=0.411;SB=-7.670e+02	GT:AD:DP:GQ:PL	0/1:24,82:107:99:1386,0,200
chrIV	2406	.	T	A	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.154;DP=52;Dels=0.00;FS=2.847;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=2;MQRankSum=2.203;QD=19.12;ReadPosRankSum=2.352;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:1027,111,0
chrIV	2469	.	G	A	135.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.086;DP=32;Dels=0.00;FS=8.921;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.06;MQ0=18;MQRankSum=-0.691;QD=4.22;ReadPosRankSum=-0.296;SB=-3.781e+01	GT:AD:DP:GQ:PL	1/1:10,21:32:21:168,21,0
chrIV	2470	.	G	A	74.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=34;Dels=0.00;FS=11.553;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=15.58;MQ0=20;MQRankSum=-1.775;QD=2.18;ReadPosRankSum=0.592;SB=-1.767e+01	GT:AD:DP:GQ:PL	0/1:11,23:34:11:104,0,11
chrIV	2489	.	T	C	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;DP=33;Dels=0.00;FS=15.563;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=14.78;MQ0=21;MQRankSum=2.367;QD=0.32;ReadPosRankSum=0.135;SB=-6.175e-03	GT:AD:DP:GQ:PL	0/1:28,5:33:40:40,0,87
chrIV	2514	.	C	T	88.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.787;DP=47;Dels=0.00;FS=21.676;HaplotypeScore=5.0363;MLEAC=1;MLEAF=0.500;MQ=26.69;MQ0=16;MQRankSum=0.336;QD=1.87;ReadPosRankSum=1.324;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,15:47:99:118,0,173
chrIV	2518	.	A	T	90.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.364;DP=49;Dels=0.00;FS=25.060;HaplotypeScore=3.5137;MLEAC=1;MLEAF=0.500;MQ=27.90;MQ0=15;MQRankSum=0.638;QD=1.84;ReadPosRankSum=1.604;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,16:49:99:120,0,220
chrIV	2527	.	G	C	102.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DP=52;Dels=0.00;FS=15.306;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=34.11;MQ0=11;MQRankSum=-0.622;QD=1.96;ReadPosRankSum=1.336;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,17:52:99:132,0,335
chrIV	2529	.	T	C	97.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395;DP=50;Dels=0.00;FS=15.306;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=34.78;MQ0=9;MQRankSum=-1.125;QD=1.94;ReadPosRankSum=0.701;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,17:50:99:127,0,344
chrIV	2539	.	G	T	90.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=51;Dels=0.00;FS=14.005;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.19;MQ0=6;MQRankSum=-1.743;QD=1.76;ReadPosRankSum=-2.312;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,16:51:99:120,0,351
chrIV	2542	.	C	T	99.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.576;DP=54;Dels=0.00;FS=11.036;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.25;MQ0=6;MQRankSum=-0.929;QD=1.83;ReadPosRankSum=-2.264;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,16:54:99:129,0,360
chrIV	2550	.	G	A	98.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.142;DP=59;Dels=0.00;FS=13.643;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=38.37;MQ0=6;MQRankSum=-1.061;QD=1.66;ReadPosRankSum=-4.392;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:41,17:59:99:128,0,409
chrIV	2552	.	G	A	85.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.753;DP=60;Dels=0.00;FS=15.909;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=39.60;MQ0=5;MQRankSum=-0.621;QD=1.42;ReadPosRankSum=-4.605;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,16:60:99:115,0,440
chrIV	2553	.	T	C	74.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030;DP=60;Dels=0.00;FS=15.909;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=39.60;MQ0=5;MQRankSum=-1.028;QD=1.23;ReadPosRankSum=-4.902;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,16:60:99:104,0,467
chrIV	2573	.	G	C	564	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=2;QD=11.28;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:1,49:50:63:597,63,0
chrIV	2621	.	C	T	697	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.966;DP=86;Dels=0.00;FS=7.723;HaplotypeScore=5.0736;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=13;MQRankSum=1.172;QD=8.10;ReadPosRankSum=3.060;SB=-5.200e+01	GT:AD:DP:GQ:PL	1/1:33,53:86:53:730,53,0
chrIV	2685	.	T	C	914	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=22;QD=12.52;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:18,54:73:99:947,105,0
chrIV	2778	.	A	G	346.04	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=49;Dels=0.00;FS=13.752;HaplotypeScore=6.6054;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=20;MQRankSum=0.537;QD=7.06;ReadPosRankSum=2.399;SB=-1.905e+01	GT:AD:DP:GQ:PL	1/1:22,27:49:23:379,23,0
chrIV	2854	.	A	G	104.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;DP=82;Dels=0.00;FS=14.065;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.77;MQ0=64;MQRankSum=-2.037;QD=1.27;ReadPosRankSum=0.632;SB=-3.995e+01	GT:AD:DP:GQ:PL	0/1:64,17:82:31:134,0,31
chrIV	10720	.	A	G	257	filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.18;MQ0=42;QD=3.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,65:66:33:290,33,0
chrIV	14332	.	T	A	287	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=20;QD=5.74;SB=-8.426e-03	GT:AD:DP:GQ:PL	1/1:0,50:50:36:320,36,0
chrIV	14618	.	A	G	82.51	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.31;MQ0=31;QD=2.17;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:12:115,12,0
chrIV	14952	.	C	T	90.26	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.90;MQ0=17;QD=3.92;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,23:23:15:123,15,0
chrIV	14965	.	T	G	99.26	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=8;QD=7.09;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,14:14:15:132,15,0
chrIV	15005	.	A	G	710	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=8;QD=16.90;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:743,84,0
chrIV	16069	.	G	A	14.21	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=4.02;MQ0=100;MQRankSum=0.727;QD=0.14;ReadPosRankSum=0.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,18:104:18:44,0,18
chrIV	16139	.	T	C	139.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.101;DP=289;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=1;MLEAF=0.500;MQ=7.87;MQ0=239;MQRankSum=1.048;QD=0.48;ReadPosRankSum=-0.054;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:238,51:289:99:169,0,300
chrIV	16554	.	T	C	41.97	filter	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=7.95;MQ0=80;QD=0.47;SB=-2.947e+01	GT:AD:DP:GQ:PL	1/1:0,85:89:9:74,9,0
chrIV	16673	.	G	A	1754	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=34.63;MQ0=0;QD=21.65;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1787,183,0
chrIV	16752	.	A	G	461	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.899;DP=45;Dels=0.00;FS=6.842;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=21.52;MQ0=15;MQRankSum=2.696;QD=10.24;ReadPosRankSum=0.691;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:18,27:45:60:494,60,0
chrIV	16758	.	G	A	253.33	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DP=41;Dels=0.00;FS=4.632;HaplotypeScore=4.2270;MLEAC=2;MLEAF=1.00;MQ=19.31;MQ0=16;MQRankSum=1.750;QD=6.18;ReadPosRankSum=0.859;SB=-2.428e+01	GT:AD:DP:GQ:PL	1/1:22,19:41:14:286,14,0
chrIV	16771	.	T	C	232.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DP=45;Dels=0.00;FS=4.761;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=14.04;MQ0=23;MQRankSum=0.987;QD=5.16;ReadPosRankSum=-1.551;SB=-2.291e+01	GT:AD:DP:GQ:PL	0/1:30,15:45:11:262,0,11
chrIV	16779	.	C	T	126.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DP=46;Dels=0.00;FS=1.922;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=13.20;MQ0=26;MQRankSum=0.079;QD=2.74;ReadPosRankSum=-2.615;SB=-6.600e+01	GT:AD:DP:GQ:PL	0/1:33,13:46:48:156,0,48
chrIV	16794	.	T	C	96.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739;DP=58;Dels=0.00;FS=3.834;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=13.55;MQ0=35;MQRankSum=1.446;QD=1.66;ReadPosRankSum=0.708;SB=-6.301e+01	GT:AD:DP:GQ:PL	0/1:20,38:58:99:126,0,111
chrIV	16800	.	T	C	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=60;Dels=0.00;FS=7.346;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=12.95;MQ0=39;MQRankSum=-1.173;QD=0.55;ReadPosRankSum=-0.320;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:50,10:60:63:63,0,183
chrIV	16806	.	T	C	36.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=65;Dels=0.00;FS=10.488;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=41;MQRankSum=-1.610;QD=0.55;ReadPosRankSum=1.073;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:55,10:65:66:66,0,195
chrIV	16818	.	C	T	21.04	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;DP=76;Dels=0.00;FS=16.790;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=15.52;MQ0=46;MQRankSum=-2.409;QD=0.28;ReadPosRankSum=2.225;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,11:76:51:51,0,301
chrIV	16932	.	C	T	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;DP=83;Dels=0.00;FS=102.554;HaplotypeScore=4.8552;MLEAC=1;MLEAF=0.500;MQ=24.78;MQ0=20;MQRankSum=0.450;QD=0.33;ReadPosRankSum=-0.561;SB=-2.750e+00	GT:AD:DP:GQ:PL	0/1:64,18:83:57:57,0,981
chrIV	16971	.	G	A	751.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DP=69;Dels=0.00;FS=168.444;HaplotypeScore=2.5942;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=9;MQRankSum=1.096;QD=10.88;ReadPosRankSum=2.021;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:32,37:69:99:781,0,347
chrIV	16977	.	T	C	1307	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=4;MQRankSum=-2.413;QD=18.67;ReadPosRankSum=1.403;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1340,144,0
chrIV	17022	.	C	T	263.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.710;DP=59;Dels=0.00;FS=149.883;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.86;MQ0=6;MQRankSum=-0.080;QD=4.46;ReadPosRankSum=0.685;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:33,26:59:99:293,0,565
chrIV	17037	.	G	A	281.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;DP=57;Dels=0.00;FS=143.944;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=29.11;MQ0=5;MQRankSum=-1.876;QD=4.93;ReadPosRankSum=-1.986;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:31,26:57:99:311,0,585
chrIV	17046	.	T	C	240.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710;DP=55;Dels=0.00;FS=138.008;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=6;MQRankSum=-0.850;QD=4.36;ReadPosRankSum=-2.470;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:31,24:55:99:270,0,573
chrIV	17061	.	A	G	144.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DP=50;Dels=0.00;FS=98.266;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=27.96;MQ0=6;MQRankSum=-1.824;QD=2.88;ReadPosRankSum=-0.355;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:31,19:50:99:174,0,484
chrIV	17064	.	C	T	108.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;DP=49;Dels=0.00;FS=106.023;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=27.74;MQ0=6;MQRankSum=-1.724;QD=2.20;ReadPosRankSum=-0.355;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:30,19:49:99:138,0,538
chrIV	17068	.	C	T	152.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.109;DP=47;Dels=0.00;FS=99.254;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=6;MQRankSum=-2.051;QD=3.23;ReadPosRankSum=1.098;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:30,17:47:99:182,0,483
chrIV	17082	.	T	C	733	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320;DP=47;Dels=0.00;FS=3.222;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.33;MQ0=5;MQRankSum=1.650;QD=15.60;ReadPosRankSum=-0.495;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:4,43:47:87:766,87,0
chrIV	17088	.	G	C	166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;DP=44;Dels=0.00;FS=95.161;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=4;MQRankSum=-1.192;QD=3.77;ReadPosRankSum=2.004;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:25,19:44:99:196,0,264
chrIV	17097	.	T	C	186.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;DP=45;Dels=0.00;FS=100.875;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=3;MQRankSum=-0.226;QD=4.13;ReadPosRankSum=1.207;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:24,21:45:99:216,0,243
chrIV	17107	.	C	T	465	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=2;QD=11.07;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:498,54,0
chrIV	17109	.	G	A	152.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;DP=44;Dels=0.00;FS=103.491;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.86;MQ0=2;MQRankSum=-2.097;QD=3.45;ReadPosRankSum=1.238;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:25,19:44:99:182,0,194
chrIV	17112	.	C	A	153.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.575;DP=43;Dels=0.00;FS=100.875;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=2;MQRankSum=-0.301;QD=3.56;ReadPosRankSum=0.614;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:24,19:43:99:183,0,172
chrIV	17130	.	G	A	119.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;DP=44;Dels=0.00;FS=99.254;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=2;MQRankSum=-2.130;QD=2.70;ReadPosRankSum=-1.680;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:26,17:44:99:149,0,177
chrIV	17136	.	T	C	63.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DP=44;Dels=0.00;FS=95.470;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=25.59;MQ0=2;MQRankSum=-1.854;QD=1.43;ReadPosRankSum=-0.840;SB=-3.015e+00	GT:AD:DP:GQ:PL	0/1:30,14:44:93:93,0,259
chrIV	17151	.	C	T	487	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.93;MQ0=0;QD=11.60;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:57:520,57,0
chrIV	17231	.	A	G	767.77	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;DP=55;Dels=0.00;FS=18.598;HaplotypeScore=3.6784;MLEAC=1;MLEAF=0.500;MQ=37.41;MQ0=5;MQRankSum=2.725;QD=13.96;ReadPosRankSum=-0.545;SB=-3.688e+02	GT:AD:DP:GQ:PL	0/1:8,46:55:0:796,0,0
chrIV	17258	.	C	T	1113.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.992;DP=91;Dels=0.00;FS=53.044;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=39.04;MQ0=4;MQRankSum=3.606;QD=12.23;ReadPosRankSum=0.136;SB=-3.370e+02	GT:AD:DP:GQ:PL	0/1:12,77:91:30:1143,0,30
chrIV	17282	.	C	A	215.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=103;Dels=0.00;FS=78.643;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=38.42;MQ0=3;MQRankSum=-4.863;QD=2.09;ReadPosRankSum=-2.466;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:78,19:103:99:245,0,1016
chrIV	17352	.	A	G	1466.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;DP=145;Dels=0.00;FS=8.586;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.69;MQ0=6;MQRankSum=6.602;QD=10.11;ReadPosRankSum=0.095;SB=-2.460e+02	GT:AD:DP:GQ:PL	0/1:55,90:145:99:1496,0,603
chrIV	17357	.	T	C	1328.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.344;DP=136;Dels=0.00;FS=15.810;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.61;MQ0=6;MQRankSum=6.429;QD=9.76;ReadPosRankSum=0.007;SB=-2.440e+02	GT:AD:DP:GQ:PL	0/1:52,84:136:99:1358,0,645
chrIV	17374	.	T	C	1360.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.136;DP=132;Dels=0.00;FS=12.472;HaplotypeScore=2.5562;MLEAC=1;MLEAF=0.500;MQ=40.60;MQ0=5;MQRankSum=6.663;QD=10.30;ReadPosRankSum=-1.624;SB=-2.410e+02	GT:AD:DP:GQ:PL	0/1:43,89:132:99:1390,0,418
chrIV	17377	.	C	T	320.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.032;DP=127;Dels=0.00;FS=12.459;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=40.74;MQ0=5;MQRankSum=-6.778;QD=2.52;ReadPosRankSum=1.586;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:86,41:127:99:350,0,1334
chrIV	17407	.	T	C	119.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;DP=105;Dels=0.00;FS=22.359;HaplotypeScore=5.1577;MLEAC=1;MLEAF=0.500;MQ=39.59;MQ0=3;MQRankSum=-6.307;QD=1.13;ReadPosRankSum=-1.593;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:77,28:105:99:149,0,1079
chrIV	17421	.	A	G	718	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=1;QD=12.38;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:81:751,81,0
chrIV	17461	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=20.02;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1054,114,0
chrIV	17568	.	G	A	111.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.520;DP=79;Dels=0.00;FS=16.451;HaplotypeScore=7.1761;MLEAC=1;MLEAF=0.500;MQ=40.20;MQ0=1;MQRankSum=-0.464;QD=1.41;ReadPosRankSum=2.196;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:62,17:79:99:141,0,1147
chrIV	17615	.	G	A	81.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;DP=106;Dels=0.00;FS=18.327;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=38.51;MQ0=2;MQRankSum=1.125;QD=0.76;ReadPosRankSum=-3.148;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,20:106:99:111,0,1510
chrIV	17660	.	T	C	311.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;DP=128;Dels=0.00;FS=55.490;HaplotypeScore=5.6352;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=1;MQRankSum=-2.202;QD=2.43;ReadPosRankSum=1.185;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,36:128:99:341,0,1572
chrIV	17772	.	A	T	242.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;DP=120;Dels=0.00;FS=4.917;HaplotypeScore=7.5691;MLEAC=1;MLEAF=0.500;MQ=48.15;MQ0=3;MQRankSum=-5.238;QD=2.02;ReadPosRankSum=1.326;SB=-1.401e+01	GT:AD:DP:GQ:PL	0/1:92,27:120:99:272,0,1732
chrIV	17850	.	T	C	1593	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=3;QD=20.96;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1626,174,0
chrIV	17898	.	C	T	560	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.3104;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=0;QD=13.33;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:63:593,63,0
chrIV	17906	.	T	C	100.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.144;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=5.5204;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;MQRankSum=-1.011;QD=4.01;ReadPosRankSum=-1.734;SB=-1.611e+02	GT:AD:DP:GQ:PL	1/1:1,23:25:15:133,15,0
chrIV	17907	.	A	G	76.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.7317;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;QD=3.33;SB=-1.285e+02	GT:AD:DP:GQ:PL	1/1:0,22:23:12:109,12,0
chrIV	17909	.	A	G	69.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=4.7317;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;QD=3.16;SB=-1.175e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:12:102,12,0
chrIV	17910	.	A	G	66.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;QD=3.02;SB=-1.155e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:12:99,12,0
chrIV	17911	.	G	C	66.51	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.908;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;MQRankSum=-1.073;QD=3.02;ReadPosRankSum=-1.569;SB=-1.092e+02	GT:AD:DP:GQ:PL	1/1:1,21:22:12:99,12,0
chrIV	17912	.	T	C	96.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=1;QD=4.19;SB=-1.123e+02	GT:AD:DP:GQ:PL	1/1:1,22:23:15:129,15,0
chrIV	17917	.	G	A	111.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=1;QD=4.12;SB=-1.153e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:15:144,15,0
chrIV	17918	.	A	C	132.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=1;QD=4.89;SB=-1.101e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:18:165,18,0
chrIV	17921	.	C	A	138.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=1;QD=4.76;SB=-1.181e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:18:171,18,0
chrIV	17955	.	C	T	307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.944;DP=57;Dels=0.00;FS=2.653;HaplotypeScore=6.2312;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=3;MQRankSum=1.926;QD=5.39;ReadPosRankSum=0.113;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:3,54:57:36:340,36,0
chrIV	18120	.	G	A	1877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=92;Dels=0.00;FS=5.000;HaplotypeScore=20.9539;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=3.562;QD=20.40;ReadPosRankSum=1.890;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:5,87:92:99:1910,201,0
chrIV	18129	.	G	A	44.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;DP=89;Dels=0.00;FS=36.548;HaplotypeScore=9.4425;MLEAC=1;MLEAF=0.500;MQ=42.83;MQ0=0;MQRankSum=-3.379;QD=0.49;ReadPosRankSum=0.916;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,19:89:74:74,0,1439
chrIV	18141	.	A	C	1414.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;DP=96;Dels=0.00;FS=32.441;HaplotypeScore=10.2401;MLEAC=1;MLEAF=0.500;MQ=41.82;MQ0=0;MQRankSum=3.541;QD=14.73;ReadPosRankSum=-1.123;SB=-7.150e+02	GT:AD:DP:GQ:PL	0/1:20,76:96:59:1444,0,59
chrIV	18195	.	A	C	1275	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=1;QD=15.55;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1308,150,0
chrIV	18200	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=2;QD=14.83;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1249,141,0
chrIV	18219	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=2;QD=15.06;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1057,123,0
chrIV	18231	.	T	A	892	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=3;QD=14.62;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:925,105,0
chrIV	18264	.	T	A	231	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=3;QD=6.79;SB=-2.202e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:30:264,30,0
chrIV	18303	.	C	T	91.26	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=1;QD=5.70;SB=-3.227e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:15:124,15,0
chrIV	18306	.	C	G	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.29;MQ0=1;MQRankSum=-2.388;QD=1.25;ReadPosRankSum=0.065;SB=-6.656e-03	GT:AD:DP:GQ:PL	0/1:9,6:16:42:50,0,42
chrIV	18325	.	T	C	269	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=0;QD=8.41;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:36:302,36,0
chrIV	18333	.	A	G	181.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;DP=44;Dels=0.00;FS=27.139;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=0;MQRankSum=4.000;QD=4.11;ReadPosRankSum=-0.981;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:23,21:44:99:211,0,227
chrIV	18342	.	A	G	216.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;DP=52;Dels=0.00;FS=32.747;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=25.93;MQ0=0;MQRankSum=4.061;QD=4.15;ReadPosRankSum=-1.592;SB=-4.601e+01	GT:AD:DP:GQ:PL	0/1:26,26:52:99:246,0,308
chrIV	18345	.	G	A	232.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;DP=53;Dels=0.00;FS=31.115;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=0;MQRankSum=3.496;QD=4.38;ReadPosRankSum=-1.895;SB=-8.501e+01	GT:AD:DP:GQ:PL	0/1:26,27:53:99:262,0,292
chrIV	18351	.	A	G	288.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;DP=56;Dels=0.00;FS=30.241;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=0;MQRankSum=4.510;QD=5.14;ReadPosRankSum=-2.308;SB=-1.020e+02	GT:AD:DP:GQ:PL	0/1:26,30:56:99:318,0,313
chrIV	18357	.	A	C	289.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DP=56;Dels=0.00;FS=30.241;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.97;MQ0=0;MQRankSum=4.444;QD=5.16;ReadPosRankSum=-1.569;SB=-1.180e+02	GT:AD:DP:GQ:PL	0/1:26,30:56:99:319,0,337
chrIV	18360	.	G	T	196.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.423;DP=54;Dels=0.00;FS=31.469;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=3.298;QD=3.63;ReadPosRankSum=-1.047;SB=-9.301e+01	GT:AD:DP:GQ:PL	0/1:26,28:54:99:226,0,332
chrIV	18361	.	C	T	194.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.666;DP=54;Dels=0.00;FS=31.469;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=4.527;QD=3.59;ReadPosRankSum=-0.926;SB=-1.000e+02	GT:AD:DP:GQ:PL	0/1:26,28:54:99:224,0,331
chrIV	18362	.	C	T	196.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.912;DP=54;Dels=0.00;FS=31.469;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=3.696;QD=3.63;ReadPosRankSum=-1.238;SB=-1.000e+02	GT:AD:DP:GQ:PL	0/1:26,28:54:99:226,0,337
chrIV	18363	.	A	G	195.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;DP=54;Dels=0.00;FS=31.469;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.85;MQ0=0;MQRankSum=3.852;QD=3.61;ReadPosRankSum=-1.082;SB=-9.201e+01	GT:AD:DP:GQ:PL	0/1:26,28:54:99:225,0,353
chrIV	18369	.	T	A	291.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=66;Dels=0.00;FS=35.399;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=3.248;QD=4.41;ReadPosRankSum=-2.841;SB=-1.640e+02	GT:AD:DP:GQ:PL	0/1:26,40:66:99:321,0,313
chrIV	18375	.	C	G	233.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;DP=62;Dels=0.00;FS=33.197;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=2.640;QD=3.76;ReadPosRankSum=-1.937;SB=-1.710e+02	GT:AD:DP:GQ:PL	0/1:25,37:62:99:263,0,293
chrIV	18376	.	T	C	241.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DP=62;Dels=0.00;FS=37.236;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=3.226;QD=3.89;ReadPosRankSum=-2.089;SB=-1.570e+02	GT:AD:DP:GQ:PL	0/1:24,37:62:99:271,0,316
chrIV	18377	.	T	C	245.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DP=61;Dels=0.00;FS=37.236;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=26.39;MQ0=0;MQRankSum=3.698;QD=4.02;ReadPosRankSum=-2.030;SB=-1.640e+02	GT:AD:DP:GQ:PL	0/1:24,37:61:99:275,0,316
chrIV	18381	.	A	G	278.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;DP=71;Dels=0.00;FS=41.062;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=26.77;MQ0=0;MQRankSum=4.224;QD=3.92;ReadPosRankSum=-2.291;SB=-2.139e+02	GT:AD:DP:GQ:PL	0/1:24,47:71:99:308,0,300
chrIV	18384	.	A	G	285.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;DP=69;Dels=0.00;FS=48.539;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.02;MQ0=0;MQRankSum=3.625;QD=4.13;ReadPosRankSum=-2.337;SB=-2.190e+02	GT:AD:DP:GQ:PL	0/1:22,47:69:99:315,0,307
chrIV	18388	.	C	G	738	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=0;QD=11.01;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:87:771,87,0
chrIV	18389	.	C	T	761	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=0;QD=11.36;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:84:794,84,0
chrIV	18402	.	G	A	310.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;DP=72;Dels=0.00;FS=69.875;HaplotypeScore=3.7546;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=2.722;QD=4.31;ReadPosRankSum=2.609;SB=-1.990e+02	GT:AD:DP:GQ:PL	0/1:20,52:72:99:340,0,270
chrIV	18404	.	C	A	314.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=71;Dels=0.00;FS=60.390;HaplotypeScore=3.7546;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=1.685;QD=4.42;ReadPosRankSum=3.100;SB=-2.800e+02	GT:AD:DP:GQ:PL	0/1:18,53:71:99:344,0,294
chrIV	18405	.	A	G	291.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;DP=71;Dels=0.00;FS=66.377;HaplotypeScore=3.7546;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=3.591;QD=4.10;ReadPosRankSum=3.318;SB=-2.450e+02	GT:AD:DP:GQ:PL	0/1:19,52:71:99:321,0,296
chrIV	18408	.	T	A	284.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;DP=72;Dels=0.00;FS=50.165;HaplotypeScore=3.7546;MLEAC=1;MLEAF=0.500;MQ=28.14;MQ0=0;MQRankSum=1.551;QD=3.94;ReadPosRankSum=3.623;SB=-2.640e+02	GT:AD:DP:GQ:PL	0/1:16,56:72:99:314,0,285
chrIV	18411	.	A	G	289.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.282;DP=70;Dels=0.00;FS=43.037;HaplotypeScore=2.7881;MLEAC=1;MLEAF=0.500;MQ=28.42;MQ0=0;MQRankSum=1.637;QD=4.13;ReadPosRankSum=3.840;SB=-3.020e+02	GT:AD:DP:GQ:PL	0/1:14,56:70:99:319,0,292
chrIV	18426	.	C	T	414	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=28.59;MQ0=0;QD=7.14;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:48:447,48,0
chrIV	18456	.	A	G	412	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.173;QD=10.30;ReadPosRankSum=1.646;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:48:445,48,0
chrIV	18457	.	A	G	416	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.67;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:48:449,48,0
chrIV	18459	.	C	T	433	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.10;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:48:466,48,0
chrIV	18467	.	C	G	463	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=10.07;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:54:496,54,0
chrIV	18477	.	G	A	443	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=10.80;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:51:476,51,0
chrIV	18483	.	G	A	409	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=11.05;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:48:442,48,0
chrIV	18486	.	T	C	371	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=0;QD=10.31;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:45:404,45,0
chrIV	18495	.	A	G	289	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=9.03;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:39:322,39,0
chrIV	18497	.	T	C	223	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=6.97;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:33:256,33,0
chrIV	18498	.	G	A	223	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=6.97;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:33:256,33,0
chrIV	18499	.	C	A	223	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=6.97;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:33:256,33,0
chrIV	18504	.	A	G	352	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=10.35;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:42:385,42,0
chrIV	18513	.	T	C	300	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;QD=9.37;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:36:333,36,0
chrIV	18516	.	A	C	293	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=8.62;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:36:326,36,0
chrIV	18531	.	A	T	257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=0.714;QD=7.56;ReadPosRankSum=1.631;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:33:290,33,0
chrIV	18540	.	A	G	207.01	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=7.14;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:27:240,27,0
chrIV	18571	.	C	G	151.06	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=5.59;SB=-2.521e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:21:184,21,0
chrIV	18588	.	G	A	160.06	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=6.16;SB=-2.041e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:21:193,21,0
chrIV	18590	.	T	G	154.06	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=5.93;SB=-1.951e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:21:187,21,0
chrIV	18603	.	C	T	121.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=6.06;SB=-1.421e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:18:154,18,0
chrIV	18605	.	G	A	114.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=5.71;SB=-1.461e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:18:147,18,0
chrIV	18606	.	A	G	114.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=5.71;SB=-1.481e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:18:147,18,0
chrIV	18612	.	C	T	68.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.27;MQ0=0;QD=4.03;SB=-1.225e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:12:101,12,0
chrIV	18615	.	T	A	46.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=2.76;SB=-1.010e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:9:79,9,0
chrIV	18624	.	T	G	45.97	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=2.55;SB=-5.098e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:9:78,9,0
chrIV	18651	.	G	A	44.97	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=0;QD=2.65;SB=-7.798e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:9:77,9,0
chrIV	18688	.	T	C	70.09	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;DP=29;Dels=0.00;FS=57.561;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=30.06;MQ0=0;MQRankSum=-0.764;QD=2.42;ReadPosRankSum=0.458;SB=-8.348e-02	GT:AD:DP:GQ:PL	0/1:14,15:29:14:100,0,14
chrIV	18689	.	T	C	66.14	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DP=28;Dels=0.00;FS=54.398;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=30.10;MQ0=0;MQRankSum=-2.211;QD=2.36;ReadPosRankSum=0.415;SB=-1.198e-01	GT:AD:DP:GQ:PL	0/1:13,15:28:12:96,0,12
chrIV	18695	.	A	T	52.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.945;DP=31;Dels=0.00;FS=54.916;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=31.44;MQ0=0;MQRankSum=-1.127;QD=1.68;ReadPosRankSum=1.680;SB=-6.492e-03	GT:AD:DP:GQ:PL	0/1:16,15:31:82:82,0,89
chrIV	18696	.	T	A	47.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;DP=31;Dels=0.00;FS=54.916;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=31.44;MQ0=0;MQRankSum=-0.850;QD=1.52;ReadPosRankSum=0.692;SB=-6.502e-03	GT:AD:DP:GQ:PL	0/1:16,15:31:77:77,0,106
chrIV	18700	.	C	G	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;DP=34;Dels=0.00;FS=63.484;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=33.73;MQ0=0;MQRankSum=-2.324;QD=0.68;ReadPosRankSum=-1.006;SB=-6.476e-03	GT:AD:DP:GQ:PL	0/1:19,15:34:53:53,0,134
chrIV	18701	.	T	C	26.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=33;Dels=0.00;FS=59.796;HaplotypeScore=4.0488;MLEAC=1;MLEAF=0.500;MQ=33.87;MQ0=0;MQRankSum=-1.681;QD=0.79;ReadPosRankSum=-2.115;SB=-6.492e-03	GT:AD:DP:GQ:PL	0/1:18,15:33:56:56,0,163
chrIV	18702	.	A	C	265	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=8.03;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:33:298,33,0
chrIV	18805	.	C	T	779	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=24.34;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:84:812,84,0
chrIV	18882	.	G	A	471	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.53;MQ0=0;QD=18.12;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:54:504,54,0
chrIV	18989	.	G	C	800	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=19.05;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:90:833,90,0
chrIV	18995	.	C	T	870	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;QD=19.33;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:903,93,0
chrIV	19084	.	T	C	862	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-1.444;QD=17.59;ReadPosRankSum=1.660;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:895,99,0
chrIV	19119	.	A	G	507	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=15.36;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:60:540,60,0
chrIV	19143	.	C	T	423	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=12.09;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:51:456,51,0
chrIV	19153	.	T	C	349	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=10.26;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:42:382,42,0
chrIV	19177	.	T	C	273	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=9.75;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:33:306,33,0
chrIV	19180	.	A	G	249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=5.283;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;MQRankSum=-1.733;QD=9.22;ReadPosRankSum=1.605;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:1,26:27:30:282,30,0
chrIV	19248	.	G	A	381	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=15.24;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:42:414,42,0
chrIV	19249	.	C	T	380	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=15.20;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:42:413,42,0
chrIV	19251	.	G	A	376	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=15.04;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:42:409,42,0
chrIV	19252	.	G	A	362	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=14.48;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:42:395,42,0
chrIV	19376	.	G	A	1031	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=17.47;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1064,117,0
chrIV	19413	.	C	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=22.24;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1545,171,0
chrIV	19445	.	C	T	1387	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=21.02;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1420,153,0
chrIV	19455	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=19.21;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1224,135,0
chrIV	19581	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.96;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1734,189,0
chrIV	19719	.	G	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=19.63;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1054,111,0
chrIV	19746	.	A	C	883	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=18.40;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:916,102,0
chrIV	19880	.	C	T	1930	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.69;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1963,207,0
chrIV	19929	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.46;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1668,174,0
chrIV	19934	.	C	T	1586	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.58;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1619,168,0
chrIV	20081	.	G	A	764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=0.693;QD=19.10;ReadPosRankSum=-0.433;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:81:797,81,0
chrIV	20112	.	T	G	620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=-1.733;QD=17.22;ReadPosRankSum=1.636;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:72:653,72,0
chrIV	20160	.	C	G	807	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.68;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:840,90,0
chrIV	20223	.	C	T	973	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.7596;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.46;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1006,105,0
chrIV	20391	.	A	T	211.01	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.23;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:0,13:13:27:244,27,0
chrIV	20444	.	A	C	574	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.26;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:66:607,66,0
chrIV	20578	.	C	T	467	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.35;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:51:500,51,0
chrIV	20642	.	T	C	663	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=24.56;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:75:696,75,0
chrIV	20659	.	T	C	372	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.67;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:0,18:18:45:405,45,0
chrIV	20779	.	T	G	541	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=19.32;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:63:574,63,0
chrIV	20785	.	G	A	481	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.7007;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=14.15;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,33:34:57:514,57,0
chrIV	20969	.	C	T	1005	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.38;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1038,108,0
chrIV	20979	.	C	G	937	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.68;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:970,105,0
chrIV	20989	.	T	G	948	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.23;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:981,105,0
chrIV	21086	.	A	T	636	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=13.25;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:69:669,69,0
chrIV	21113	.	G	T	471	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=10.02;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:57:504,57,0
chrIV	21119	.	A	T	465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=3.651;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=1.053;QD=9.12;ReadPosRankSum=1.664;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:54:498,54,0
chrIV	21165	.	G	A	1501	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.00;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1534,162,0
chrIV	21255	.	G	C	1674	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.93;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1707,186,0
chrIV	21300	.	G	T	2033	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.41;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2066,213,0
chrIV	21337	.	G	A	1840	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.00;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1873,195,0
chrIV	21380	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=22.34;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1887,201,0
chrIV	21431	.	C	T	1676	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=22.35;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1709,183,0
chrIV	21450	.	A	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=20.05;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1577,171,0
chrIV	21476	.	C	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;QD=19.22;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1917,216,0
chrIV	21481	.	G	A	2030	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=19.90;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2063,228,0
chrIV	21510	.	A	G	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=2.748;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.093;QD=17.91;ReadPosRankSum=2.397;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:2,91:94:99:1717,192,0
chrIV	21595	.	G	A	2140	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.32;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2173,222,0
chrIV	21677	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.86;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1443,156,0
chrIV	21759	.	A	G	2022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.364;QD=21.51;ReadPosRankSum=1.695;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2055,222,0
chrIV	21781	.	A	G	1513	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.91;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1546,171,0
chrIV	21807	.	T	C	1244	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.52;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1277,144,0
chrIV	21893	.	T	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.81;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1448,150,0
chrIV	21929	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.66;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1547,171,0
chrIV	21964	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.67;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1801,192,0
chrIV	22006	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.408;QD=22.00;ReadPosRankSum=1.630;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1529,168,0
chrIV	22049	.	G	T	1260	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.11;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1293,141,0
chrIV	22139	.	C	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.92;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1539,168,0
chrIV	22166	.	A	G	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.254;DP=72;Dels=0.00;FS=9.148;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.561;QD=21.37;ReadPosRankSum=3.329;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:4,67:72:99:1572,171,0
chrIV	22312	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.77;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1338,144,0
chrIV	22379	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.505;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.2590;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.516;QD=19.54;ReadPosRankSum=1.660;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:83:971,83,0
chrIV	22446	.	A	T	871	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.33;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:904,99,0
chrIV	22481	.	G	A	1247	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.09;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1280,135,0
chrIV	22513	.	A	G	1325	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.72;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1358,144,0
chrIV	22594	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.346;QD=23.05;ReadPosRankSum=1.669;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1324,141,0
chrIV	22713	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.38;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1398,147,0
chrIV	22728	.	T	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.85;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1388,150,0
chrIV	22874	.	A	G	870	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.77;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:903,96,0
chrIV	22928	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.67;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1154,126,0
chrIV	23066	.	T	C	1839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;DP=92;Dels=0.00;FS=9.208;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.354;QD=19.99;ReadPosRankSum=3.360;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:4,88:92:99:1872,204,0
chrIV	23143	.	A	G	2100	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.21;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2133,228,0
chrIV	23241	.	G	A	986	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.43;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1019,105,0
chrIV	23275	.	G	A	951	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.13;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:984,102,0
chrIV	23305	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.53;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1224,129,0
chrIV	23368	.	G	A	1618	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.47;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1651,174,0
chrIV	23647	.	T	C	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.892;QD=22.17;ReadPosRankSum=1.575;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1496,162,0
chrIV	23797	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.26;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1227,135,0
chrIV	24143	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8668;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.72;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1493,162,0
chrIV	24553	.	A	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.15;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1144,126,0
chrIV	24701	.	C	T	2202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.258;DP=96;Dels=0.00;FS=3.979;HaplotypeScore=5.1660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.784;QD=22.94;ReadPosRankSum=-1.440;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2235,211,0
chrIV	24724	.	C	T	2036	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.37;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2069,213,0
chrIV	24937	.	T	C	1512	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.376;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.577;QD=24.00;ReadPosRankSum=1.457;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1545,168,0
chrIV	25294	.	G	C	2322	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7377;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.69;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2355,258,0
chrIV	25756	.	C	T	2877	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.02;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2910,306,0
chrIV	25868	.	A	G	2613	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1393;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.97;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2646,288,0
chrIV	26005	.	T	A	2714	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.07;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2747,282,0
chrIV	26153	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7202;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.50;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1398,153,0
chrIV	26177	.	G	A	1048	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.77;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1081,111,0
chrIV	26200	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=24.30;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1078,114,0
chrIV	26265	.	C	A	940	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.43;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:973,102,0
chrIV	26272	.	A	G	978	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.11;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1011,111,0
chrIV	26365	.	A	G	1030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=-1.159;QD=15.61;ReadPosRankSum=2.374;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:1063,117,0
chrIV	26374	.	T	A	1066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=66;Dels=0.00;FS=13.136;HaplotypeScore=3.7838;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-1.556;QD=16.15;ReadPosRankSum=2.890;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:3,63:66:99:1099,117,0
chrIV	26950	.	C	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.61;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1265,132,0
chrIV	27072	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=57;Dels=0.00;FS=3.076;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.369;QD=18.77;ReadPosRankSum=2.320;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1103,99,0
chrIV	27090	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.90;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1329,141,0
chrIV	27189	.	T	C	1445	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=22.23;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1478,159,0
chrIV	27210	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=20.75;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1423,150,0
chrIV	27235	.	T	C	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=71;Dels=0.00;FS=6.998;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-1.929;QD=18.46;ReadPosRankSum=2.381;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1344,147,0
chrIV	27258	.	G	T	987	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=13.52;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1020,111,0
chrIV	27277	.	C	T	1135	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=15.99;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1168,123,0
chrIV	27377	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.53;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1139,120,0
chrIV	27441	.	A	G	787	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=16.40;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:820,90,0
chrIV	27587	.	T	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=18.83;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1257,141,0
chrIV	27611	.	A	G	1111	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.179;QD=18.83;ReadPosRankSum=1.673;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1144,126,0
chrIV	27629	.	G	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=19.88;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1206,126,0
chrIV	27678	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.02;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1529,162,0
chrIV	27718	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.15;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1495,162,0
chrIV	27734	.	C	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.88;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1324,138,0
chrIV	27879	.	G	T	1244	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.44;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1277,135,0
chrIV	27904	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.04;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1443,150,0
chrIV	27972	.	T	C	1758	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.76;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1791,195,0
chrIV	28077	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=3.070;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=0.403;QD=20.25;ReadPosRankSum=1.685;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1511,162,0
chrIV	28487	.	A	G	930	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.14;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:963,102,0
chrIV	28530	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.724;QD=18.62;ReadPosRankSum=1.669;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1057,114,0
chrIV	28537	.	T	C	1013	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.47;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1046,111,0
chrIV	28578	.	C	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.07;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1158,126,0
chrIV	28639	.	T	C	926	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.58;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:959,102,0
chrIV	28654	.	C	T	750	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.86;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:81:783,81,0
chrIV	28656	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.35;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:767,84,0
chrIV	28798	.	C	T	742	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=20.05;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:775,81,0
chrIV	28799	.	A	G	716	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.35;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:749,81,0
chrIV	28853	.	C	T	579	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.8732;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=14.12;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:63:612,63,0
chrIV	28968	.	C	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.40;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1858,198,0
chrIV	29103	.	G	A	996	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.53;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1029,108,0
chrIV	29124	.	T	C	830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.106;QD=16.94;ReadPosRankSum=1.662;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:93:863,93,0
chrIV	29135	.	C	T	808	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=17.19;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:841,90,0
chrIV	29152	.	T	G	735	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.70;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:768,84,0
chrIV	29441	.	G	A	931	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.40;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:964,102,0
chrIV	29570	.	C	T	1175	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.58;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1208,129,0
chrIV	29654	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.4710;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.71;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1618,171,0
chrIV	29693	.	G	A	1108	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.47;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1141,120,0
chrIV	29701	.	T	C	1056	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.03;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1089,120,0
chrIV	30086	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.5015;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.72;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1421,147,0
chrIV	30128	.	G	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.88;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1206,126,0
chrIV	30404	.	C	T	2235	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=25.11;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2268,237,0
chrIV	30446	.	T	G	1790	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=17.72;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,97:101:99:1823,204,0
chrIV	30464	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.85;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1748,195,0
chrIV	31224	.	G	T	994	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.29;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1027,108,0
chrIV	31412	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.21;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1495,168,0
chrIV	31427	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.47;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1269,135,0
chrIV	31492	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.34;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1155,120,0
chrIV	31511	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.29;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1152,126,0
chrIV	31685	.	C	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.31;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1482,156,0
chrIV	31709	.	T	C	1062	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=16.59;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:64:99:1095,120,0
chrIV	31833	.	G	C	1797	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.46;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1830,195,0
chrIV	32090	.	T	A	825	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.165;QD=19.64;ReadPosRankSum=1.650;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:93:858,93,0
chrIV	32217	.	G	A	1486	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1551;MLEAC=2;MLEAF=1.00;MQ=60.27;MQ0=0;QD=21.23;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1519,159,0
chrIV	32595	.	T	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.17;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1687,180,0
chrIV	32706	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.412;QD=22.31;ReadPosRankSum=1.626;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1483,162,0
chrIV	32904	.	T	A	1873	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1906,198,0
chrIV	33027	.	G	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.54;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1519,159,0
chrIV	33135	.	C	G	526	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:60:559,60,0
chrIV	33253	.	A	T	1812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.480;QD=21.83;ReadPosRankSum=1.690;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1845,189,0
chrIV	33853	.	G	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.01;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1609,168,0
chrIV	33856	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.742;QD=19.45;ReadPosRankSum=1.687;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1531,168,0
chrIV	33937	.	G	C	1850	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.56;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1883,201,0
chrIV	34471	.	A	G	1634	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.03;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1667,186,0
chrIV	34522	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.58;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1494,162,0
chrIV	35804	.	G	A	1252	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.89;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1285,135,0
chrIV	35807	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.495;QD=16.89;ReadPosRankSum=1.683;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1232,129,0
chrIV	36103	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.97;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1373,150,0
chrIV	37036	.	T	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.06;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1377,153,0
chrIV	37069	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.10;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1217,135,0
chrIV	37123	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=14.71;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1004,108,0
chrIV	37138	.	A	G	1080	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=-0.773;QD=16.36;ReadPosRankSum=1.679;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1113,123,0
chrIV	37147	.	G	A	1200	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=17.39;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1233,132,0
chrIV	37478	.	T	C	1445	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0735;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.367;QD=21.89;ReadPosRankSum=1.680;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1478,162,0
chrIV	37486	.	A	G	1610	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=22.36;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1643,180,0
chrIV	37785	.	C	A	2184	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.27;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2217,231,0
chrIV	37850	.	G	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.66;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2400,252,0
chrIV	38098	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.82;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1574,171,0
chrIV	38279	.	A	T	2799	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.13;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2832,294,0
chrIV	38419	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=73;Dels=0.00;FS=8.623;HaplotypeScore=11.2194;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.017;QD=20.89;ReadPosRankSum=2.381;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:2,70:73:99:1558,177,0
chrIV	38616	.	G	C	772	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:805,87,0
chrIV	39281	.	T	C	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.427;QD=22.91;ReadPosRankSum=1.687;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1820,195,0
chrIV	39500	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.176;QD=22.32;ReadPosRankSum=1.609;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1283,135,0
chrIV	39986	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.85;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1343,144,0
chrIV	40286	.	A	G	1338	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.93;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1371,153,0
chrIV	40439	.	T	C	1509	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.56;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1542,168,0
chrIV	40469	.	C	T	1632	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=21.76;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1665,180,0
chrIV	40598	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.74;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1494,156,0
chrIV	40666	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.37;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1602,168,0
chrIV	40670	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.06;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1500,162,0
chrIV	40775	.	T	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.56;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1319,138,0
chrIV	40838	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.33;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1201,126,0
chrIV	40965	.	G	C	1015	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.15;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1048,114,0
chrIV	41303	.	T	G	1118	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.30;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1151,126,0
chrIV	41318	.	T	C	807	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.24;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:93:840,93,0
chrIV	41360	.	G	A	1002	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.77;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1035,108,0
chrIV	41383	.	C	T	1649	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.90;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1682,171,0
chrIV	41590	.	T	C	728	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:761,84,0
chrIV	41927	.	G	A	1091	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.73;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1124,117,0
chrIV	42278	.	C	T	2552	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=23.63;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2585,273,0
chrIV	42504	.	C	A	2461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=113.7151;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-1.732;QD=21.03;ReadPosRankSum=1.640;SB=-1.460e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2494,267,0
chrIV	42903	.	C	T	2040	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.40;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2073,216,0
chrIV	43389	.	C	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.39;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1533,162,0
chrIV	43901	.	G	A	38.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;DP=81;Dels=0.05;FS=72.755;HaplotypeScore=15.8299;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=0;MQRankSum=-0.531;QD=0.47;ReadPosRankSum=-2.123;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:51,25:77:68:68,0,419
chrIV	44385	.	C	T	992	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=1;QD=19.84;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1025,108,0
chrIV	45363	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.47;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1622,177,0
chrIV	46064	.	A	C	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=4.114;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;MQRankSum=-0.672;QD=24.86;ReadPosRankSum=1.662;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1251,135,0
chrIV	46068	.	G	C	1173	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=25.50;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1206,129,0
chrIV	46115	.	G	A	918	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=21.86;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:951,102,0
chrIV	46164	.	T	A	1073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;MQRankSum=0.866;QD=22.35;ReadPosRankSum=1.588;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1106,120,0
chrIV	46179	.	T	G	1499	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=0.974;QD=23.42;ReadPosRankSum=1.678;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1532,168,0
chrIV	48023	.	A	C	18.82	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=4.71;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:50,6,0
chrIV	48026	.	A	C	19.81	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=3.30;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:51,6,0
chrIV	48028	.	G	C	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=2.18;SB=-1.740e+00	GT:AD:DP:GQ:PL	1/1:0,8:10:6:53,6,0
chrIV	48241	.	T	C	1841	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=23.01;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1874,204,0
chrIV	48267	.	G	T	1685	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=23.40;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1718,177,0
chrIV	48349	.	G	A	2267	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=24.12;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2300,243,0
chrIV	48530	.	C	A	3080	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.4173;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.06;SB=-1.687e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:3113,321,0
chrIV	48803	.	A	C	2331	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.09;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2364,252,0
chrIV	49108	.	C	T	768	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.73;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:801,84,0
chrIV	49711	.	C	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1260,138,0
chrIV	50318	.	A	G	1473	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.41;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1506,162,0
chrIV	50365	.	C	T	1803	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=17.0488;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=17.50;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1836,189,0
chrIV	50376	.	A	G	2217	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.11;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2250,243,0
chrIV	50502	.	C	T	2093	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.04;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,113:116:99:2126,225,0
chrIV	50523	.	T	C	1761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.458;QD=20.24;ReadPosRankSum=1.692;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1794,195,0
chrIV	50545	.	T	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=18.90;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1413,150,0
chrIV	50610	.	G	A	461	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=9.3997;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=6.88;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:54:494,54,0
chrIV	50621	.	C	A	733	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=10.32;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:81:766,81,0
chrIV	50645	.	A	T	779	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=10.53;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:87:812,87,0
chrIV	50657	.	T	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=12.17;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1116,120,0
chrIV	50680	.	A	G	1657	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=14.66;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1690,186,0
chrIV	50736	.	C	T	3081	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.88;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3114,324,0
chrIV	50767	.	C	T	2592	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.00;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2625,273,0
chrIV	51189	.	G	A	2029	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2062,225,0
chrIV	52221	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.52;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1243,138,0
chrIV	53011	.	A	G	1610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.337;QD=22.36;ReadPosRankSum=1.684;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1643,177,0
chrIV	53077	.	T	C	1650	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.64;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1683,186,0
chrIV	53471	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.06;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1180,123,0
chrIV	53596	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.69;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1161,123,0
chrIV	53890	.	A	G	1278	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1311,144,0
chrIV	54379	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=8.6676;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.112;QD=19.83;ReadPosRankSum=1.687;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1560,171,0
chrIV	54490	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.68;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1336,138,0
chrIV	54946	.	T	C	1803	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.381;QD=22.82;ReadPosRankSum=1.688;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1836,198,0
chrIV	55070	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1436,150,0
chrIV	56076	.	A	G	1061	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.65;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1094,120,0
chrIV	56155	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.632;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.982;QD=20.67;ReadPosRankSum=1.617;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1273,141,0
chrIV	56466	.	T	C	1459	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.53;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1492,159,0
chrIV	56921	.	A	G	847	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.23;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,64:64:99:880,99,0
chrIV	56962	.	T	A	509	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.39;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:57:542,57,0
chrIV	56967	.	G	A	520	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.30;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:57:553,57,0
chrIV	57157	.	T	G	1486	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.558;QD=25.19;ReadPosRankSum=1.674;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1519,165,0
chrIV	57234	.	G	C	789	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.76;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:90:822,90,0
chrIV	57243	.	G	A	669	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=20.27;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:702,72,0
chrIV	57334	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.57;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1070,117,0
chrIV	57691	.	A	T	892	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.908;QD=20.74;ReadPosRankSum=1.650;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:96:925,96,0
chrIV	57805	.	C	T	1136	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.25;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1169,123,0
chrIV	57851	.	T	G	1476	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.06;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1509,165,0
chrIV	58045	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.20;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:961,108,0
chrIV	58059	.	C	T	934	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.23;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:967,102,0
chrIV	58177	.	G	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=16.70;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1185,129,0
chrIV	58195	.	G	A	1367	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=16.88;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1400,147,0
chrIV	58356	.	C	T	1885	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.71;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1918,204,0
chrIV	58444	.	T	C	997	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.55;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1030,111,0
chrIV	58461	.	T	C	968	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.17;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1001,108,0
chrIV	58506	.	A	G	1267	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.12;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1300,144,0
chrIV	58891	.	A	G	837	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.41;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:870,93,0
chrIV	59068	.	T	C	1470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.495;QD=20.14;ReadPosRankSum=1.685;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1503,165,0
chrIV	59114	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.68;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1738,180,0
chrIV	59192	.	T	C	907	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:940,102,0
chrIV	59321	.	T	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.14;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1162,120,0
chrIV	59368	.	A	G	816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.184;QD=17.36;ReadPosRankSum=1.585;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:93:849,93,0
chrIV	59640	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.48;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1610,171,0
chrIV	59782	.	T	C	571	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;QD=12.41;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:66:604,66,0
chrIV	59791	.	G	A	437	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=10.92;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:51:470,51,0
chrIV	59797	.	G	A	357	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=9.39;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:42:390,42,0
chrIV	59805	.	T	C	236	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.238;DP=28;Dels=0.00;FS=5.441;HaplotypeScore=2.9479;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;MQRankSum=-1.486;QD=8.43;ReadPosRankSum=0.124;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:1,27:28:30:269,30,0
chrIV	59809	.	A	T	92.64	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;DP=29;Dels=0.00;FS=11.831;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=0;MQRankSum=-0.460;QD=3.19;ReadPosRankSum=3.311;SB=-9.864e+01	GT:AD:DP:GQ:PL	0/1:13,16:29:5:122,0,5
chrIV	59810	.	C	T	73.27	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.295;DP=29;Dels=0.00;FS=8.443;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=0;MQRankSum=-0.546;QD=2.53;ReadPosRankSum=3.906;SB=-7.927e+01	GT:AD:DP:GQ:PL	0/1:14,15:29:9:103,0,9
chrIV	59814	.	A	C	77.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;DP=35;Dels=0.00;FS=10.840;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=38.36;MQ0=0;MQRankSum=1.283;QD=2.20;ReadPosRankSum=4.613;SB=-8.901e+01	GT:AD:DP:GQ:PL	0/1:15,19:35:90:107,0,90
chrIV	60081	.	C	T	1305	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.08;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1338,144,0
chrIV	60227	.	G	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.70;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1855,195,0
chrIV	60597	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.71;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1379,141,0
chrIV	60685	.	G	A	648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=30;Dels=0.00;FS=4.210;HaplotypeScore=5.3198;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.016;QD=21.60;ReadPosRankSum=1.614;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:69:681,69,0
chrIV	61020	.	A	G	721	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.85;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:81:754,81,0
chrIV	61039	.	T	C	549	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.418;QD=16.64;ReadPosRankSum=1.523;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:66:582,66,0
chrIV	61194	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.12;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1216,126,0
chrIV	61526	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1660,183,0
chrIV	61704	.	G	A	794	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:87:827,87,0
chrIV	61961	.	A	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.09;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1292,135,0
chrIV	62726	.	T	C	729	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.20;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:762,87,0
chrIV	62804	.	A	G	984	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.40;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1017,111,0
chrIV	62811	.	A	G	927	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=7.728;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-0.931;QD=14.26;ReadPosRankSum=2.336;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:960,108,0
chrIV	63216	.	A	G	1322	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.66;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1355,147,0
chrIV	63228	.	G	C	1161	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.35;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1194,129,0
chrIV	63504	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.71;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1249,132,0
chrIV	63536	.	G	C	962	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=15.77;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:995,108,0
chrIV	63545	.	C	T	988	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=16.47;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1021,108,0
chrIV	63612	.	C	T	807	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=13.45;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:87:840,87,0
chrIV	63653	.	C	T	1160	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.85;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1193,129,0
chrIV	63704	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.71;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1553,159,0
chrIV	63839	.	G	C	1377	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.65;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1410,153,0
chrIV	63939	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.52;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1970,213,0
chrIV	63970	.	T	C	1606	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.62;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1639,180,0
chrIV	64139	.	T	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.16;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1087,114,0
chrIV	64151	.	T	C	923	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.10;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:956,105,0
chrIV	64415	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=72;Dels=0.00;FS=3.017;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-0.497;QD=17.79;ReadPosRankSum=2.381;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1314,144,0
chrIV	64427	.	T	C	1371	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.59;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1404,150,0
chrIV	64832	.	C	T	1551	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.25;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1584,165,0
chrIV	64950	.	A	G	685	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.03;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:718,78,0
chrIV	65250	.	T	C	1565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.527;QD=22.04;ReadPosRankSum=1.582;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1598,174,0
chrIV	65350	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1302,144,0
chrIV	65456	.	G	A	2274	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.67;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2307,246,0
chrIV	65598	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.93;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1283,138,0
chrIV	65892	.	A	G	859	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:96:892,96,0
chrIV	66190	.	C	T	1525	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.4593;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.89;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1558,168,0
chrIV	66230	.	T	C	1936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.306;QD=22.78;ReadPosRankSum=1.691;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1969,213,0
chrIV	66345	.	G	C	1970	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.70;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2003,216,0
chrIV	66355	.	A	T	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.695;QD=20.03;ReadPosRankSum=1.695;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1896,198,0
chrIV	66398	.	G	A	1776	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.10;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1809,192,0
chrIV	66478	.	T	C	2497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=15.3406;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.105;QD=21.16;ReadPosRankSum=1.672;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,115:118:99:2530,282,0
chrIV	66552	.	G	T	2432	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.73;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2465,255,0
chrIV	66855	.	T	G	2547	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.37;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2580,279,0
chrIV	67011	.	C	T	2568	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.78;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2601,276,0
chrIV	67485	.	A	C	1082	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5010;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.826;QD=16.65;ReadPosRankSum=1.626;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1115,123,0
chrIV	67529	.	A	C	1074	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.61;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1107,120,0
chrIV	67659	.	T	C	856	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=23.78;SB=-1.370e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:99:889,99,0
chrIV	67718	.	A	G	275	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=13.75;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:33:308,33,0
chrIV	67719	.	C	T	276	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.24;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:33:309,33,0
chrIV	67805	.	A	C	467	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.4871;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.23;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:54:500,54,0
chrIV	67845	.	G	C	310	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=19.6428;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=13.48;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,22:23:39:343,39,0
chrIV	68082	.	G	A	1009	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.61;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1042,105,0
chrIV	68235	.	A	G	1872	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.55;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1905,207,0
chrIV	68451	.	T	C	961	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.45;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:994,108,0
chrIV	68777	.	T	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=72;Dels=0.00;FS=6.727;HaplotypeScore=5.8642;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.539;QD=19.15;ReadPosRankSum=2.311;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1412,156,0
chrIV	68796	.	G	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.7340;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=18.30;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1186,126,0
chrIV	68799	.	G	T	964	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=16.91;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:997,102,0
chrIV	69156	.	G	A	2428	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.12;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2461,267,0
chrIV	69703	.	A	T	1829	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=15.4577;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.580;QD=20.10;ReadPosRankSum=0.019;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1862,201,0
chrIV	69990	.	A	G	2571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3656;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.797;QD=20.40;ReadPosRankSum=1.705;SB=-1.612e+03	GT:AD:DP:GQ:PL	1/1:1,125:126:99:2604,285,0
chrIV	70075	.	G	A	2734	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.3170;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.60;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,117:121:99:2767,285,0
chrIV	70257	.	C	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.55;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1519,168,0
chrIV	70633	.	T	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1058,117,0
chrIV	70900	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.09;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1903,198,0
chrIV	71168	.	T	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.04;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1289,141,0
chrIV	71207	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.19;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1608,174,0
chrIV	71264	.	A	G	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4744;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.866;QD=19.55;ReadPosRankSum=1.575;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1773,189,0
chrIV	71339	.	G	A	1597	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1630,168,0
chrIV	71523	.	T	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.22;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1391,153,0
chrIV	71582	.	T	C	1140	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.69;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1173,129,0
chrIV	71645	.	C	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.14;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1492,165,0
chrIV	72338	.	C	T	1795	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.94;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1828,192,0
chrIV	72373	.	G	A	1823	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.26;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1856,195,0
chrIV	72485	.	C	T	2147	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.5756;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.64;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2180,228,0
chrIV	72956	.	T	C	1926	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.26;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1959,213,0
chrIV	73757	.	A	G	1178	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=3.736;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.199;QD=22.65;ReadPosRankSum=1.666;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1211,135,0
chrIV	74731	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.55;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1814,189,0
chrIV	74863	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.282;QD=21.04;ReadPosRankSum=1.687;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1653,180,0
chrIV	74917	.	T	C	1910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8085;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.155;QD=22.74;ReadPosRankSum=1.567;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1943,207,0
chrIV	75082	.	G	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1533,168,0
chrIV	76038	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.166;HaplotypeScore=5.0645;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.325;QD=16.74;ReadPosRankSum=1.691;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1456,159,0
chrIV	76659	.	A	G	1723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.127;DP=91;Dels=0.00;FS=5.255;HaplotypeScore=9.2980;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.997;QD=18.93;ReadPosRankSum=3.359;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:4,87:91:99:1756,192,0
chrIV	76799	.	C	T	656	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.73;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:75:689,75,0
chrIV	76974	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=3.358;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.199;QD=18.62;ReadPosRankSum=1.599;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1001,105,0
chrIV	76982	.	C	T	806	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.19;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:839,87,0
chrIV	77207	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.9807;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.12;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1505,162,0
chrIV	77295	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=83;Dels=0.00;FS=9.866;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.915;QD=22.53;ReadPosRankSum=2.391;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1903,207,0
chrIV	77418	.	T	C	651	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.040;QD=15.88;ReadPosRankSum=1.646;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:75:684,75,0
chrIV	78173	.	C	T	717	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:81:750,81,0
chrIV	78406	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=71;Dels=0.00;FS=3.748;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.245;QD=17.13;ReadPosRankSum=1.516;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,66:71:99:1249,138,0
chrIV	78731	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.40;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1155,126,0
chrIV	78945	.	C	G	1234	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.98;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1267,138,0
chrIV	79321	.	G	A	1706	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.69;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1739,186,0
chrIV	79387	.	C	T	993	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.74;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1026,105,0
chrIV	79389	.	C	T	979	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.47;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1012,108,0
chrIV	79455	.	G	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.46;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1098,114,0
chrIV	79541	.	G	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.92;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1518,159,0
chrIV	79621	.	C	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.99;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1880,195,0
chrIV	79687	.	T	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.06;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1729,183,0
chrIV	79744	.	G	T	2137	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.73;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2170,231,0
chrIV	79782	.	T	C	1886	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.57;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1919,207,0
chrIV	79855	.	G	A	1469	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=22.26;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1502,165,0
chrIV	79893	.	T	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8156;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=21.61;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1373,144,0
chrIV	79909	.	G	A	1012	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=21.08;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1045,111,0
chrIV	80013	.	T	C	2109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;MQRankSum=0.492;QD=21.97;ReadPosRankSum=1.659;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2142,231,0
chrIV	80089	.	G	A	1936	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=20.82;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1969,210,0
chrIV	80250	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=18.40;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1376,150,0
chrIV	80251	.	C	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=17.83;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1317,144,0
chrIV	80311	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=15.21;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1052,114,0
chrIV	80312	.	G	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=15.46;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1069,114,0
chrIV	80353	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.18;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1126,123,0
chrIV	80374	.	T	C	767	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=11.98;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:87:800,87,0
chrIV	80379	.	T	C	723	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=11.66;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:81:756,81,0
chrIV	80414	.	G	A	1140	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=14.25;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1173,123,0
chrIV	80430	.	G	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;QD=11.60;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1042,120,0
chrIV	80440	.	T	A	1080	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.71;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1113,117,0
chrIV	80445	.	A	T	1104	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.043;QD=13.80;ReadPosRankSum=1.689;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1137,117,0
chrIV	80448	.	C	T	1043	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.55;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1076,111,0
chrIV	80454	.	G	C	1048	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=13.44;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1081,114,0
chrIV	80467	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=12.44;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1227,129,0
chrIV	80483	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.92;MQ0=0;MQRankSum=-0.602;QD=12.16;ReadPosRankSum=1.694;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1152,129,0
chrIV	80506	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.612;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;MQRankSum=-0.020;QD=13.83;ReadPosRankSum=0.306;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1222,132,0
chrIV	80557	.	C	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.38;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1337,138,0
chrIV	80612	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;MQRankSum=0.285;QD=19.32;ReadPosRankSum=1.688;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1559,171,0
chrIV	80619	.	T	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=18.83;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1577,171,0
chrIV	80742	.	C	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=24.32;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1979,207,0
chrIV	80820	.	C	A	1956	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=24.76;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1989,213,0
chrIV	80884	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.50;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1563,171,0
chrIV	80929	.	G	A	1800	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.50;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1833,195,0
chrIV	80964	.	T	A	1810	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.206;DP=79;Dels=0.00;FS=3.791;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.110;QD=22.91;ReadPosRankSum=-0.592;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1843,172,0
chrIV	81001	.	C	G	1920	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=20.87;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1953,210,0
chrIV	81034	.	A	C	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=2.804;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=-0.977;QD=19.35;ReadPosRankSum=2.258;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1523,168,0
chrIV	81080	.	T	C	1187	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=16.04;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1220,135,0
chrIV	81145	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.71;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1553,168,0
chrIV	81156	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.16;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1387,150,0
chrIV	81181	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.797;QD=19.12;ReadPosRankSum=1.622;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1257,141,0
chrIV	81215	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.67;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1209,132,0
chrIV	81257	.	T	G	1197	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.642;DP=66;Dels=0.00;FS=10.775;HaplotypeScore=11.3707;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=0.610;QD=18.14;ReadPosRankSum=2.892;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:3,62:66:99:1230,135,0
chrIV	81298	.	C	G	1852	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.15;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1885,204,0
chrIV	81439	.	T	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.86;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1556,171,0
chrIV	81537	.	T	G	1837	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.0822;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=21.11;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1870,204,0
chrIV	81570	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.6833;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.65;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1392,153,0
chrIV	81572	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=6.7195;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.96;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1474,153,0
chrIV	81585	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=0.433;QD=17.19;ReadPosRankSum=1.684;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1271,138,0
chrIV	81653	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.81;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1407,144,0
chrIV	81776	.	T	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.47;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1536,165,0
chrIV	81825	.	A	T	2556	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.85;SB=-1.463e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2589,270,0
chrIV	81868	.	A	G	2828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=122;Dels=0.00;FS=4.071;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.115;QD=23.18;ReadPosRankSum=1.703;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:1,119:122:99:2861,309,0
chrIV	81963	.	G	A	1233	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.97;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1266,135,0
chrIV	82754	.	A	T	3575.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=139;Dels=0.00;FS=10.060;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.009;QD=25.72;ReadPosRankSum=2.397;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:2,137:139:99:3575,375,0
chrIV	82818	.	A	G	2883	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=25.29;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2916,312,0
chrIV	82949	.	T	C	2671	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=25.68;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2704,294,0
chrIV	82999	.	G	A	2281	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.01;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2314,237,0
chrIV	83049	.	A	T	2092	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.51;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2125,234,0
chrIV	83205	.	A	T	1959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.000;QD=23.32;ReadPosRankSum=1.691;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1992,207,0
chrIV	83231	.	C	T	1521	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=21.42;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1554,162,0
chrIV	83241	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=20.67;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1521,168,0
chrIV	83311	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=8.633;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.498;QD=20.15;ReadPosRankSum=1.685;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1504,165,0
chrIV	83319	.	C	T	1464	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=20.62;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:71:99:1497,156,0
chrIV	83327	.	C	T	1291	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.49;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1324,144,0
chrIV	83419	.	T	G	359	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=23.6191;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=12.82;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,27:28:45:392,45,0
chrIV	83420	.	C	A	357	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=22.8304;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=13.22;SB=-9.501e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:42:390,42,0
chrIV	83424	.	G	C	182.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=7.58;SB=-5.402e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:27:215,27,0
chrIV	83425	.	A	G	184.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=7.67;SB=-5.402e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:27:217,27,0
chrIV	83501	.	G	A	116.26	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=4.15;SB=-6.027e+01	GT:AD:DP:GQ:PL	1/1:0,26:28:15:149,15,0
chrIV	83514	.	T	C	245	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=11.67;SB=-6.002e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:30:278,30,0
chrIV	83684	.	A	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=23.62;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1710,180,0
chrIV	84632	.	G	T	1336	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.05;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1369,144,0
chrIV	85163	.	T	C	1059	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.61;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1092,117,0
chrIV	85442	.	T	C	1054	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.16;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1087,117,0
chrIV	85844	.	C	T	485	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.05;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:54:518,54,0
chrIV	85895	.	C	T	366	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.30;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:42:399,42,0
chrIV	86111	.	C	A	1027	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.45;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1060,111,0
chrIV	86164	.	T	C	559	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=16.44;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:63:592,63,0
chrIV	86165	.	T	G	498	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=15.56;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:57:531,57,0
chrIV	86294	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.65;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1505,165,0
chrIV	86337	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.56;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1801,192,0
chrIV	87149	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.538;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.509;QD=22.76;ReadPosRankSum=1.681;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1581,177,0
chrIV	87227	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.78;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1363,141,0
chrIV	87868	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.689;QD=17.84;ReadPosRankSum=0.146;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1514,151,0
chrIV	87985	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=4.027;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.057;QD=21.35;ReadPosRankSum=0.057;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1976,216,0
chrIV	88023	.	A	T	731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.070;QD=6.77;ReadPosRankSum=2.013;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:2,106:108:99:764,99,0
chrIV	88024	.	T	A	723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.980;QD=6.57;ReadPosRankSum=1.779;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:2,108:110:75:756,75,0
chrIV	88221	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.73;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1806,189,0
chrIV	88301	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=4.239;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-1.582;QD=20.99;ReadPosRankSum=1.682;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1502,165,0
chrIV	88760	.	G	A	1702	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.64;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1735,183,0
chrIV	90257	.	A	C	2362	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.35;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2395,261,0
chrIV	90538	.	A	C	1769	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.4923;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.02;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,90:93:99:1802,192,0
chrIV	90638	.	A	C	2102	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.9516;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=17.81;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2135,231,0
chrIV	90975	.	G	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.33;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1641,171,0
chrIV	91318	.	T	C	1086	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.6478;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.88;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1119,120,0
chrIV	91325	.	G	T	1051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.7537;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.516;QD=21.02;ReadPosRankSum=1.660;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,47:50:95:1084,95,0
chrIV	91426	.	G	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.08;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1108,114,0
chrIV	91465	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.87;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1291,132,0
chrIV	91537	.	A	G	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.843;QD=21.36;ReadPosRankSum=1.685;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1614,177,0
chrIV	91673	.	T	C	1426	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7729;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.28;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1459,156,0
chrIV	91720	.	G	C	1767	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.25;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1800,195,0
chrIV	91807	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.675;QD=23.17;ReadPosRankSum=1.675;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1423,153,0
chrIV	92275	.	T	C	2103	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=92;Dels=0.00;FS=9.543;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.058;QD=22.86;ReadPosRankSum=2.396;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2136,228,0
chrIV	92503	.	T	C	1103	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.51;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1136,126,0
chrIV	93804	.	T	C	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=79;Dels=0.00;FS=9.362;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.646;QD=20.00;ReadPosRankSum=3.341;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:4,75:79:99:1613,174,0
chrIV	94149	.	G	A	2387	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.2705;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.52;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2420,267,0
chrIV	94757	.	G	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.77;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1084,117,0
chrIV	95033	.	C	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=14.56;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1096,114,0
chrIV	95036	.	C	A	1018	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=13.05;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1051,114,0
chrIV	96121	.	G	A	2446	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.52;SB=-1.423e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2479,264,0
chrIV	96205	.	T	A	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.434;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.168;QD=21.88;ReadPosRankSum=1.611;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1915,201,0
chrIV	96217	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.74;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1642,180,0
chrIV	96268	.	G	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.8149;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.83;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1671,174,0
chrIV	96663	.	G	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.08;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1764,177,0
chrIV	96776	.	T	C	859	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.47;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:96:892,96,0
chrIV	96799	.	T	C	716	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.87;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:84:749,84,0
chrIV	97156	.	A	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.99;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1882,201,0
chrIV	97262	.	G	A	1073	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.35;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1106,114,0
chrIV	97292	.	C	T	1413	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.4684;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.16;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1446,150,0
chrIV	97330	.	G	A	1179	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.14;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1212,129,0
chrIV	97444	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1151,126,0
chrIV	97828	.	T	G	900	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.31;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:933,102,0
chrIV	97870	.	C	T	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.862;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.590;QD=19.09;ReadPosRankSum=-1.163;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1446,150,0
chrIV	97927	.	A	C	1724	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.05;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1757,195,0
chrIV	98255	.	C	G	1979	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.61;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2012,216,0
chrIV	99173	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5721;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.34;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1798,195,0
chrIV	99689	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.3960;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.68;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1598,174,0
chrIV	99755	.	C	T	1185	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.94;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1218,126,0
chrIV	99854	.	G	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.82;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1511,165,0
chrIV	99881	.	T	C	1452	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.35;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1485,165,0
chrIV	99907	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.71;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1255,132,0
chrIV	100598	.	C	T	2302	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2335,246,0
chrIV	100715	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.35;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1976,210,0
chrIV	100723	.	G	A	2163	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=22.07;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2196,225,0
chrIV	101097	.	C	A	1383	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=53.7688;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.95;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1416,147,0
chrIV	101143	.	A	C	1527	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=16.97;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1560,171,0
chrIV	101326	.	T	C	1776	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3849;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.06;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1809,192,0
chrIV	101419	.	T	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=26.26;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1635,168,0
chrIV	101584	.	T	C	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=4.370;HaplotypeScore=7.3077;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-1.658;QD=21.72;ReadPosRankSum=1.695;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2053,228,0
chrIV	101608	.	G	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.25;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1924,204,0
chrIV	101707	.	C	T	1812	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.9801;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.91;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1845,195,0
chrIV	101734	.	A	G	2092	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.99;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2125,228,0
chrIV	101773	.	G	A	2083	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.8670;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.40;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2116,219,0
chrIV	101844	.	T	C	1617	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;DP=71;Dels=0.00;FS=2.458;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.012;QD=22.77;ReadPosRankSum=3.329;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:4,67:71:99:1650,180,0
chrIV	101871	.	G	A	1969	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4506;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.16;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2002,213,0
chrIV	102443	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.920;QD=20.70;ReadPosRankSum=1.647;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1710,186,0
chrIV	102617	.	C	T	2367	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.15;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2400,252,0
chrIV	102838	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.6585;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.58;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1515,168,0
chrIV	102889	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5214;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.13;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1372,153,0
chrIV	102948	.	A	G	1690	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.95;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1723,189,0
chrIV	103054	.	T	C	1488	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.15;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1521,165,0
chrIV	103171	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.72;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1359,150,0
chrIV	103342	.	C	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.3730;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.25;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1228,129,0
chrIV	103796	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.71;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1668,174,0
chrIV	103829	.	C	T	1885	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.92;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1918,198,0
chrIV	103898	.	G	A	2321	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.44;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2354,246,0
chrIV	104093	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.06;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:886,99,0
chrIV	104741	.	T	C	1186	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1219,135,0
chrIV	104780	.	G	A	1092	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.84;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1125,117,0
chrIV	104854	.	C	T	912	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=17.88;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:945,99,0
chrIV	104965	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.16;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1472,159,0
chrIV	105160	.	T	A	857	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:890,93,0
chrIV	105197	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.80;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1023,111,0
chrIV	105244	.	A	G	923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.247;QD=18.84;ReadPosRankSum=1.662;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:956,102,0
chrIV	105308	.	C	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.29;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1055,111,0
chrIV	105348	.	C	A	1163	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.71;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1196,126,0
chrIV	105373	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.32;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1250,132,0
chrIV	105408	.	A	G	1114	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.54;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1147,126,0
chrIV	105894	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.69;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1136,117,0
chrIV	105898	.	G	A	1092	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.51;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1125,123,0
chrIV	106143	.	C	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.80;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1340,141,0
chrIV	106440	.	T	A	921	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.19;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:954,102,0
chrIV	106727	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5114;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.24;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1611,174,0
chrIV	106842	.	C	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=16.91;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1115,114,0
chrIV	106846	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=15.78;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1059,114,0
chrIV	107381	.	C	T	2350	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.38;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2383,249,0
chrIV	107759	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.19;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1434,150,0
chrIV	107930	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.72;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:763,84,0
chrIV	107963	.	A	G	976	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.42;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1009,111,0
chrIV	107994	.	T	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.95;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1284,141,0
chrIV	108056	.	T	C	1162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=59;Dels=0.00;FS=2.978;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.759;QD=19.69;ReadPosRankSum=2.364;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:2,55:59:99:1195,129,0
chrIV	108161	.	T	C	1434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2513;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.122;QD=19.92;ReadPosRankSum=-1.439;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1467,139,0
chrIV	108281	.	C	T	930	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.37;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:963,102,0
chrIV	108611	.	C	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.77;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1103,114,0
chrIV	108806	.	T	C	1662	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.41;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1695,189,0
chrIV	108845	.	A	G	1495	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.00;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1528,168,0
chrIV	108917	.	G	A	1885	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.80;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1918,198,0
chrIV	109279	.	G	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.07;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1625,171,0
chrIV	109331	.	C	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.87;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1306,138,0
chrIV	109355	.	C	T	1436	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.09;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1469,156,0
chrIV	109468	.	C	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.09;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1226,129,0
chrIV	109550	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.434;QD=20.32;ReadPosRankSum=1.673;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1232,132,0
chrIV	109828	.	C	A	972	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.34;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1005,105,0
chrIV	109836	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=3.002;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=-0.405;QD=15.61;ReadPosRankSum=2.365;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:2,56:59:99:954,105,0
chrIV	110284	.	A	C	936	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=17.33;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:969,108,0
chrIV	110285	.	C	T	980	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.15;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1013,108,0
chrIV	110352	.	G	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.2693;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.47;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1171,129,0
chrIV	110433	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.98;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1166,123,0
chrIV	110696	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.742;QD=17.68;ReadPosRankSum=1.670;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1023,111,0
chrIV	111349	.	A	G	1267	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.86;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1300,141,0
chrIV	111432	.	G	A	2051	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.57;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2084,219,0
chrIV	111716	.	C	T	1632	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.15;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1665,177,0
chrIV	112122	.	C	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.49;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1810,186,0
chrIV	112233	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.137;QD=18.98;ReadPosRankSum=1.677;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1229,135,0
chrIV	112236	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=3.6951;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.82;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1262,132,0
chrIV	112284	.	T	C	1467	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.57;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1500,162,0
chrIV	112308	.	C	T	1911	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.47;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1944,201,0
chrIV	112515	.	C	T	1699	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1065;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.78;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1732,180,0
chrIV	112560	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DP=77;Dels=0.00;FS=2.978;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.336;QD=16.88;ReadPosRankSum=0.016;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1333,127,0
chrIV	112809	.	T	C	1673	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.0273;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.73;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1706,186,0
chrIV	113295	.	T	C	788	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.368;QD=19.70;ReadPosRankSum=1.550;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:1,37:40:90:821,90,0
chrIV	113442	.	T	C	837	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.433;QD=20.41;ReadPosRankSum=1.646;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:93:870,93,0
chrIV	113458	.	G	A	915	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.32;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:948,99,0
chrIV	113472	.	A	T	684	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.12;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:75:717,75,0
chrIV	113491	.	A	C	724	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.56;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:757,81,0
chrIV	113547	.	G	A	849	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.46;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:882,99,0
chrIV	113548	.	T	A	934	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=20.30;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:967,102,0
chrIV	113554	.	T	C	902	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.41;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:935,99,0
chrIV	113998	.	A	T	1620	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.60;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1653,171,0
chrIV	114010	.	T	G	1635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.237;QD=19.46;ReadPosRankSum=1.691;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1668,180,0
chrIV	114144	.	T	A	1897	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.24;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1930,201,0
chrIV	114147	.	C	T	1862	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.08;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1895,210,0
chrIV	114170	.	T	G	1968	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=17.11;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2001,213,0
chrIV	114220	.	A	T	2393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=12.7489;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.820;QD=17.86;ReadPosRankSum=1.628;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:1,133:134:99:2426,261,0
chrIV	114279	.	A	T	3667.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.81;SB=-1.810e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3667,379,0
chrIV	114468	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.04;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1163,123,0
chrIV	114755	.	T	C	904	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.65;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:937,102,0
chrIV	114797	.	T	C	582	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.64;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:66:615,66,0
chrIV	115009	.	T	C	2155	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.94;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2188,246,0
chrIV	115035	.	A	C	2384	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.70;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,101:105:99:2417,267,0
chrIV	115328	.	T	C	1662	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.305;QD=22.77;ReadPosRankSum=1.637;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1695,186,0
chrIV	115541	.	T	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.77;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1866,198,0
chrIV	115568	.	C	T	1306	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9773;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.73;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1339,144,0
chrIV	115605	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.00;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1401,147,0
chrIV	116227	.	A	G	2135	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3542;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.95;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,103:107:99:2168,237,0
chrIV	116482	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.88;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1360,144,0
chrIV	117241	.	G	A	2869	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.06;SB=-1.692e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2902,306,0
chrIV	117248	.	C	T	2816	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.11;SB=-1.747e+03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:2849,303,0
chrIV	117352	.	G	A	1699	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1960;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=18.47;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1732,183,0
chrIV	117353	.	G	A	1686	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=44.64;MQ0=0;QD=18.33;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1719,180,0
chrIV	117362	.	T	C	1627	SnpCluster	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2657;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=16.27;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1660,183,0
chrIV	117409	.	A	T	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=114;Dels=0.00;FS=11.415;HaplotypeScore=5.2459;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;MQRankSum=-1.004;QD=12.07;ReadPosRankSum=1.845;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:2,112:114:99:1409,147,0
chrIV	117441	.	T	C	1504	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=75.6863;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=14.60;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1537,165,0
chrIV	117532	.	G	A	1704	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.05;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1737,180,0
chrIV	117622	.	T	C	2635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=3.153;HaplotypeScore=6.2800;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.894;QD=21.25;ReadPosRankSum=1.620;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2668,294,0
chrIV	117705	.	T	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=21.08;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1677,180,0
chrIV	117799	.	C	T	2058	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.325;DP=101;Dels=0.00;FS=4.141;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.397;QD=20.38;ReadPosRankSum=0.144;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,97:101:99:2091,203,0
chrIV	117913	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=22.13;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1405,150,0
chrIV	117959	.	C	T	1467	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.26;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1500,156,0
chrIV	118023	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-0.465;QD=21.43;ReadPosRankSum=1.690;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1790,192,0
chrIV	118053	.	G	A	2046	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=23.25;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2079,216,0
chrIV	118130	.	A	G	2231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=5.535;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-1.732;QD=23.24;ReadPosRankSum=1.695;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,92:96:99:2264,249,0
chrIV	118971	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1348,147,0
chrIV	119786	.	T	C	2093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=103;Dels=0.00;FS=5.349;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.723;QD=20.32;ReadPosRankSum=2.931;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:3,99:103:99:2126,237,0
chrIV	120471	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.92;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1653,180,0
chrIV	120963	.	A	G	2055	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.35;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2088,225,0
chrIV	120999	.	A	G	2300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.330;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4298;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.639;QD=20.54;ReadPosRankSum=1.454;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2333,239,0
chrIV	121089	.	C	T	2652	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.47;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2685,291,0
chrIV	121098	.	A	G	2235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=106;Dels=0.00;FS=2.865;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.917;QD=21.08;ReadPosRankSum=2.334;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2268,252,0
chrIV	121469	.	G	A	1702	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.97;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1735,183,0
chrIV	121593	.	G	A	999	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.50;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1032,111,0
chrIV	121624	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=68;Dels=0.00;FS=3.076;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.543;QD=18.51;ReadPosRankSum=0.595;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1292,121,0
chrIV	121990	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.69;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1139,120,0
chrIV	122142	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.99;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1712,186,0
chrIV	122163	.	C	T	1903	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9413;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.93;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1936,201,0
chrIV	122441	.	A	G	1802	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.35;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1835,198,0
chrIV	122524	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.78;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1354,144,0
chrIV	122546	.	G	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.25;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1268,138,0
chrIV	122569	.	A	G	1336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=72;Dels=0.00;FS=3.617;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.979;QD=18.56;ReadPosRankSum=1.682;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:2,68:72:99:1369,150,0
chrIV	122596	.	A	G	1255	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=18.73;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1288,138,0
chrIV	122629	.	C	T	1349	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.41;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1382,147,0
chrIV	122656	.	T	C	1154	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.92;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1187,132,0
chrIV	122724	.	G	A	1708	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.47;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1741,183,0
chrIV	123745	.	A	G	2151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.8200;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.663;QD=21.51;ReadPosRankSum=1.697;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2184,237,0
chrIV	124666	.	C	T	1037	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=15.71;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1070,111,0
chrIV	125095	.	G	C	801	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=22.89;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:90:834,90,0
chrIV	125130	.	T	C	859	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.45;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:892,96,0
chrIV	125307	.	C	T	1432	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=16.85;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1465,156,0
chrIV	125309	.	C	T	1479	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=17.00;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1512,156,0
chrIV	125348	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=-1.361;QD=16.15;ReadPosRankSum=1.650;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1390,153,0
chrIV	125365	.	T	A	1183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=2.861;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;MQRankSum=-1.795;QD=12.59;ReadPosRankSum=2.345;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1216,126,0
chrIV	125382	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=96;Dels=0.00;FS=12.646;HaplotypeScore=3.5123;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;MQRankSum=-1.537;QD=12.06;ReadPosRankSum=2.927;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:3,93:96:99:1191,129,0
chrIV	125405	.	T	C	837	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=2.919;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-0.733;QD=11.96;ReadPosRankSum=1.985;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:2,67:70:93:870,93,0
chrIV	125406	.	T	A	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-1.732;QD=12.30;ReadPosRankSum=1.682;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:93:894,93,0
chrIV	125431	.	T	A	960	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=-0.600;QD=13.33;ReadPosRankSum=2.381;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:993,105,0
chrIV	125465	.	A	G	839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=51;Dels=0.00;FS=5.850;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-1.594;QD=16.45;ReadPosRankSum=1.663;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:96:872,96,0
chrIV	125922	.	G	A	2001	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.29;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2034,210,0
chrIV	125933	.	T	A	1859	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.87;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1892,198,0
chrIV	126391	.	C	T	476	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=14.42;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:57:509,57,0
chrIV	126416	.	T	C	517	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=15.67;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:60:550,60,0
chrIV	126981	.	C	T	828	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.00;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:861,90,0
chrIV	127692	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=21.54;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1541,168,0
chrIV	127767	.	A	T	1110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=-0.777;QD=18.81;ReadPosRankSum=1.673;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1143,120,0
chrIV	127782	.	C	T	923	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;QD=17.42;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:956,99,0
chrIV	127800	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=16.87;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1062,111,0
chrIV	127812	.	C	T	873	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;QD=13.64;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:906,99,0
chrIV	127834	.	G	A	706	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=10.86;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:78:739,78,0
chrIV	127854	.	T	C	879	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=12.74;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:912,102,0
chrIV	127869	.	C	T	998	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=12.96;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1031,105,0
chrIV	127965	.	C	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=17.56;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1157,120,0
chrIV	127974	.	A	G	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;MQRankSum=-0.472;QD=16.65;ReadPosRankSum=1.680;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1132,123,0
chrIV	128025	.	C	T	1019	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.76;MQ0=0;MQRankSum=-1.347;QD=14.15;ReadPosRankSum=1.684;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1052,108,0
chrIV	128029	.	A	G	926	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;QD=12.86;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:959,105,0
chrIV	128034	.	T	C	762	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=11.55;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:87:795,87,0
chrIV	128040	.	G	T	688	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=11.66;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:75:721,75,0
chrIV	128052	.	C	T	685	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=12.69;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:78:718,78,0
chrIV	128061	.	A	G	581	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=0;QD=12.10;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:66:614,66,0
chrIV	128121	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=22.08;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1446,153,0
chrIV	128328	.	A	G	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=-1.135;QD=20.88;ReadPosRankSum=1.673;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1265,135,0
chrIV	128361	.	T	C	1207	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=22.35;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1240,138,0
chrIV	128418	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.02;MQ0=0;QD=23.90;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1252,135,0
chrIV	128454	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=5.019;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;MQRankSum=-0.513;QD=20.57;ReadPosRankSum=1.668;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1144,129,0
chrIV	128461	.	A	G	1230	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=19.84;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1263,144,0
chrIV	128484	.	G	A	1548	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=20.10;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1581,171,0
chrIV	128506	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=19.31;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1520,171,0
chrIV	128538	.	A	G	1595	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.225;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;MQRankSum=-1.563;QD=19.45;ReadPosRankSum=1.690;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1628,163,0
chrIV	128571	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;QD=18.16;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1468,159,0
chrIV	128577	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=18.35;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1446,159,0
chrIV	128589	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=5.754;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=-0.022;QD=17.28;ReadPosRankSum=1.688;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1398,153,0
chrIV	128619	.	T	C	963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.315;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-0.968;QD=14.16;ReadPosRankSum=1.681;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:996,111,0
chrIV	128679	.	T	C	473	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;MQRankSum=1.588;QD=9.65;ReadPosRankSum=1.660;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:57:506,57,0
chrIV	128682	.	T	A	476	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.50;MQ0=0;QD=9.33;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:54:509,54,0
chrIV	128688	.	T	C	581	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.424;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;MQRankSum=0.724;QD=10.56;ReadPosRankSum=1.669;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:66:614,66,0
chrIV	128691	.	C	T	623	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=11.75;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:69:656,69,0
chrIV	128715	.	A	G	597	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=11.71;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:69:630,69,0
chrIV	128717	.	T	C	575	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.543;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;MQRankSum=-1.732;QD=11.06;ReadPosRankSum=1.666;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:66:608,66,0
chrIV	128721	.	G	T	547	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;QD=10.13;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:63:580,63,0
chrIV	128724	.	T	C	587	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=11.74;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:69:620,69,0
chrIV	128772	.	T	C	774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=54;Dels=0.00;FS=2.966;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=0.630;QD=14.33;ReadPosRankSum=2.357;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:2,51:54:93:807,93,0
chrIV	128775	.	T	C	762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=-1.489;QD=13.37;ReadPosRankSum=1.672;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:87:795,87,0
chrIV	128823	.	G	T	985	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.41;MQ0=0;QD=16.15;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1018,111,0
chrIV	128861	.	C	T	857	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=14.53;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:96:890,96,0
chrIV	128866	.	G	A	780	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.19;MQ0=0;QD=13.22;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:96:813,96,0
chrIV	128873	.	C	T	645	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=11.94;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:75:678,75,0
chrIV	128885	.	G	A	448	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=9.53;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:54:481,54,0
chrIV	128886	.	C	G	439	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=9.34;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:54:472,54,0
chrIV	128913	.	G	A	419	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=8.22;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:51:452,51,0
chrIV	128920	.	G	A	410	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=7.74;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:48:443,48,0
chrIV	128931	.	T	C	328	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=6.69;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:42:361,42,0
chrIV	128934	.	G	A	352	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=7.04;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:42:385,42,0
chrIV	128940	.	T	C	414	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.46;MQ0=0;QD=8.12;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:51:447,51,0
chrIV	129117	.	T	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9417;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.97;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1585,171,0
chrIV	129270	.	G	A	2026	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=24.71;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2059,213,0
chrIV	129666	.	G	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.12;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1617,171,0
chrIV	130517	.	G	T	1970	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.58;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2003,210,0
chrIV	130640	.	G	A	1204	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.42;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1237,129,0
chrIV	130711	.	G	A	996	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.44;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1029,108,0
chrIV	130748	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=57;Dels=0.00;FS=2.924;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.149;QD=17.54;ReadPosRankSum=2.277;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1033,111,0
chrIV	130831	.	C	T	1189	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.29;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1222,126,0
chrIV	130869	.	C	A	1560	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=12.0874;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.02;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1593,168,0
chrIV	130967	.	C	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.93;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1615,168,0
chrIV	131084	.	G	A	1024	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.32;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1057,117,0
chrIV	131116	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.70;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1270,132,0
chrIV	131453	.	T	A	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=68;Dels=0.00;FS=6.208;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.806;QD=20.93;ReadPosRankSum=2.897;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:3,65:68:99:1456,150,0
chrIV	131512	.	A	G	1459	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.32;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1492,159,0
chrIV	131600	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.10;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1961,204,0
chrIV	132120	.	G	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.07;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1357,150,0
chrIV	132148	.	T	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.39;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1175,129,0
chrIV	132259	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.48;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1408,147,0
chrIV	132560	.	G	A	1497	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.68;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1530,165,0
chrIV	133171	.	A	G	661	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.44;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:75:694,75,0
chrIV	134327	.	C	A	1940	filter	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=37.29;MQ0=22;QD=17.80;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:11,98:109:99:1973,210,0
chrIV	135298	.	T	A	940	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.58;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:973,105,0
chrIV	135409	.	A	G	914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.405;QD=17.25;ReadPosRankSum=1.667;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:947,102,0
chrIV	136069	.	G	A	1994	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.35;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2027,216,0
chrIV	136202	.	G	A	3524.01	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.0372;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.91;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3524,372,0
chrIV	136516	.	C	G	1929	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.4053;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=15.94;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,117:121:99:1962,210,0
chrIV	136920	.	T	C	1612	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.66;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1645,174,0
chrIV	136940	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=16.98;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1476,162,0
chrIV	136987	.	G	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=13.94;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1246,135,0
chrIV	137047	.	G	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.78;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1459,162,0
chrIV	137766	.	C	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.27;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1522,159,0
chrIV	137826	.	C	T	564	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.56;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:63:597,63,0
chrIV	137867	.	G	T	37.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=51.13;MQ0=0;MQRankSum=1.936;QD=2.66;ReadPosRankSum=-2.980;SB=-1.918e+01	GT:AD:DP:GQ:PL	0/1:7,7:14:11:67,0,11
chrIV	137895	.	C	T	225.01	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=14.06;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:27:258,27,0
chrIV	138088	.	G	A	1031	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.77;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1064,111,0
chrIV	138241	.	A	G	1960	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.50;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1993,216,0
chrIV	138482	.	A	G	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=66;Dels=0.00;FS=3.041;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.521;QD=19.39;ReadPosRankSum=2.373;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:2,62:66:99:1313,144,0
chrIV	138968	.	G	A	1915	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.80;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1948,213,0
chrIV	139426	.	C	A	1560	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=13.4196;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.53;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1593,174,0
chrIV	139681	.	C	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.80;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1559,168,0
chrIV	140808	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.47;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1957,213,0
chrIV	140835	.	A	C	1793	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=18.30;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1826,198,0
chrIV	140862	.	C	T	1505	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=16.72;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1538,162,0
chrIV	141006	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=5.6661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.32;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1297,135,0
chrIV	141245	.	T	A	2909	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.74;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2942,309,0
chrIV	141469	.	C	T	3826.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=9.6697;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.47;SB=-1.885e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3826,397,0
chrIV	141505	.	G	T	4330.01	PASS	AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.06;SB=-2.231e+03	GT:AD:DP:GQ:PL	1/1:0,178:180:99:4330,451,0
chrIV	141575	.	G	A	2031	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.34;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2064,225,0
chrIV	141605	.	G	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.5037;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.61;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1522,159,0
chrIV	141921	.	G	A	2377	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.51;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2410,252,0
chrIV	142603	.	T	C	2363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.604;QD=21.68;ReadPosRankSum=2.062;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:2,106:109:99:2396,255,0
chrIV	142711	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.07;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1902,201,0
chrIV	142762	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.126;QD=19.00;ReadPosRankSum=1.682;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1344,150,0
chrIV	142799	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.50;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1468,153,0
chrIV	143626	.	C	T	1977	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.47;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,84:88:99:2010,210,0
chrIV	143653	.	T	C	1512	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.91;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1545,168,0
chrIV	143902	.	C	G	3012	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.5336;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.06;SB=-1.633e+03	GT:AD:DP:GQ:PL	1/1:0,140:143:99:3045,333,0
chrIV	143903	.	C	T	3069	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.4328;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.08;SB=-1.700e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3102,327,0
chrIV	144208	.	G	A	2523	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=24.03;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2556,267,0
chrIV	144646	.	T	C	2310	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2812;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.59;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2343,255,0
chrIV	144796	.	G	T	2671	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.43;SB=-1.501e+03	GT:AD:DP:GQ:PL	1/1:0,110:114:99:2704,282,0
chrIV	145562	.	G	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=16.42;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1215,135,0
chrIV	145686	.	A	G	2071	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.595;QD=16.18;ReadPosRankSum=1.624;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:1,127:128:99:2104,228,0
chrIV	145687	.	T	G	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=128;Dels=0.00;FS=11.180;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=0.336;QD=15.74;ReadPosRankSum=2.944;SB=-1.428e+03	GT:AD:DP:GQ:PL	1/1:3,123:128:99:2048,222,0
chrIV	145769	.	T	C	3406.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.2488;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.42;SB=-1.868e+03	GT:AD:DP:GQ:PL	1/1:0,159:159:99:3406,375,0
chrIV	145805	.	T	A	2701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.519;QD=23.69;ReadPosRankSum=1.611;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2734,285,0
chrIV	146231	.	T	A	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.877;QD=21.08;ReadPosRankSum=1.597;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1677,177,0
chrIV	146252	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.274;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.866;QD=20.78;ReadPosRankSum=1.630;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1446,159,0
chrIV	146675	.	A	C	1566	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.61;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1599,177,0
chrIV	147092	.	A	T	1306	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.14;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1339,144,0
chrIV	147362	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.16;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1202,123,0
chrIV	147374	.	A	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.73;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1168,126,0
chrIV	147377	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=17.97;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1165,126,0
chrIV	147431	.	A	G	1120	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=18.67;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1153,129,0
chrIV	147591	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=12.8778;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=17.08;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1297,144,0
chrIV	147846	.	T	G	740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=4.337;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.638;QD=19.47;ReadPosRankSum=1.641;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:84:773,84,0
chrIV	148010	.	T	G	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=4.771;HaplotypeScore=8.3337;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.722;QD=15.79;ReadPosRankSum=1.684;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1170,129,0
chrIV	148638	.	A	G	1806	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=21.50;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1839,195,0
chrIV	148986	.	T	C	1034	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.5399;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.679;QD=15.67;ReadPosRankSum=1.626;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,64:66:98:1067,98,0
chrIV	149311	.	A	T	667	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.23;SB=-6.301e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:75:700,75,0
chrIV	149500	.	A	G	1539	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.52;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1572,171,0
chrIV	149678	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=16.30;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1370,144,0
chrIV	149689	.	T	C	1515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.000;QD=17.62;ReadPosRankSum=1.691;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,83:86:99:1548,168,0
chrIV	150223	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.73;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1380,150,0
chrIV	150307	.	A	G	1891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.658;QD=19.70;ReadPosRankSum=1.695;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:1,93:96:99:1924,210,0
chrIV	150382	.	G	C	1910	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.2248;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.49;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1943,213,0
chrIV	150486	.	G	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.91;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1865,195,0
chrIV	150567	.	A	G	1755	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.09;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1788,195,0
chrIV	150634	.	G	A	1014	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.78;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1047,111,0
chrIV	150745	.	C	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.15;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1650,171,0
chrIV	150784	.	A	G	1797	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0600;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.32;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1830,201,0
chrIV	150838	.	T	C	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=2.944;HaplotypeScore=5.7155;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.066;QD=21.67;ReadPosRankSum=2.397;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2048,222,0
chrIV	151009	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.626;QD=21.47;ReadPosRankSum=1.684;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1579,168,0
chrIV	151696	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=60;Dels=0.00;FS=3.485;HaplotypeScore=5.2445;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.613;QD=17.60;ReadPosRankSum=0.060;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,57:60:99:1089,120,0
chrIV	151765	.	G	A	1356	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.86;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1389,144,0
chrIV	152053	.	A	G	1795	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.12;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,82:85:99:1828,204,0
chrIV	152269	.	C	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1600,171,0
chrIV	152920	.	T	A	1987	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.60;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2020,213,0
chrIV	153229	.	T	A	1885	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.1431;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=1.597;QD=24.17;ReadPosRankSum=1.687;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1918,204,0
chrIV	153267	.	G	A	1753	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=24.01;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1786,186,0
chrIV	153283	.	T	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.01;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1654,180,0
chrIV	153397	.	A	G	1772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.570;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.009;QD=19.47;ReadPosRankSum=1.694;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1805,198,0
chrIV	153415	.	T	C	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.412;QD=18.80;ReadPosRankSum=1.567;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1612,177,0
chrIV	153457	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.56;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1184,129,0
chrIV	153559	.	T	C	1319	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.07;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1352,150,0
chrIV	153605	.	T	C	1262	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=17.05;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1295,141,0
chrIV	153625	.	G	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.32;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1384,144,0
chrIV	153691	.	G	A	2047	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.25;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2080,213,0
chrIV	153712	.	G	A	2074	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.06;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2107,228,0
chrIV	154012	.	C	G	946	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=17.85;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:979,105,0
chrIV	154372	.	G	A	1444	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.22;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1477,153,0
chrIV	154680	.	C	T	2127	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.16;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2160,225,0
chrIV	154696	.	A	C	1789	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.10;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1822,204,0
chrIV	155368	.	C	A	2576	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.01;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2609,294,0
chrIV	155446	.	T	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.63;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1893,195,0
chrIV	155447	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.014;QD=20.03;ReadPosRankSum=2.311;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1816,198,0
chrIV	155661	.	T	C	3419.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.37;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,159:160:99:3419,366,0
chrIV	155900	.	G	A	1875	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.55;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1908,213,0
chrIV	156110	.	A	T	970	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.56;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1003,108,0
chrIV	156137	.	C	A	1009	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.40;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1042,108,0
chrIV	156155	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.39;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1501,156,0
chrIV	156313	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6934;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.36;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1784,195,0
chrIV	156362	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.937;QD=23.06;ReadPosRankSum=1.675;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,60:63:99:1486,162,0
chrIV	156591	.	G	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.06;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1317,141,0
chrIV	156943	.	A	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.76;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1050,114,0
chrIV	157038	.	A	G	1582	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=73;Dels=0.00;FS=6.330;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.051;QD=21.67;ReadPosRankSum=2.313;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:2,70:73:99:1615,177,0
chrIV	157244	.	C	T	2007	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.34;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2040,213,0
chrIV	157266	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.30;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1588,177,0
chrIV	157424	.	T	C	1168	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1201,135,0
chrIV	157918	.	T	C	1446	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=16.62;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1479,159,0
chrIV	157927	.	G	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8574;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=16.62;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,81:86:99:1462,159,0
chrIV	158013	.	C	A	2780	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.8782;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=18.66;SB=-2.006e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:2813,291,0
chrIV	158023	.	C	G	2341	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.01;FS=0.000;HaplotypeScore=8.1408;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.09;SB=-1.653e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2374,267,0
chrIV	158032	.	G	A	2545	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.74;SB=-1.754e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:2578,282,0
chrIV	158137	.	G	A	1882	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=26.14;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1915,195,0
chrIV	158474	.	T	C	1706	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.23;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,95:99:99:1739,186,0
chrIV	158505	.	T	A	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=6.970;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.794;QD=18.51;ReadPosRankSum=2.382;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1384,147,0
chrIV	158510	.	T	C	1349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=6.322;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.483;QD=18.23;ReadPosRankSum=2.383;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1382,150,0
chrIV	158749	.	C	T	3059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0419;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.393;QD=22.83;ReadPosRankSum=1.498;SB=-1.481e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:3092,324,0
chrIV	158929	.	T	C	1956	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0667;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.03;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1989,222,0
chrIV	158981	.	A	C	2775	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.71;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:0,131:134:99:2808,306,0
chrIV	159017	.	A	G	2705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.329;QD=20.97;ReadPosRankSum=1.705;SB=-1.529e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2738,291,0
chrIV	159085	.	A	C	2215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1010;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.502;QD=20.70;ReadPosRankSum=1.667;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2248,243,0
chrIV	159133	.	C	T	2034	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.41;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2067,216,0
chrIV	159190	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=75;Dels=0.00;FS=3.064;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.253;QD=20.05;ReadPosRankSum=2.315;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:2,71:75:99:1537,171,0
chrIV	159318	.	T	C	2530	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.79;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2563,285,0
chrIV	159320	.	G	C	2558	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.47;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2591,279,0
chrIV	159428	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.63;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1374,147,0
chrIV	159505	.	T	C	2196	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.87;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2229,240,0
chrIV	159602	.	C	G	2828	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.44;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,124:126:99:2861,315,0
chrIV	159777	.	C	T	932	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.27;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:965,99,0
chrIV	159954	.	T	C	2448	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.25;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2481,267,0
chrIV	160071	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.55;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1142,126,0
chrIV	160218	.	C	T	1372	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.32;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1405,150,0
chrIV	160520	.	G	A	954	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.20;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:987,102,0
chrIV	160615	.	G	A	906	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.59;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:939,99,0
chrIV	160731	.	A	G	964	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:997,108,0
chrIV	161006	.	T	C	1846	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.67;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1879,204,0
chrIV	161007	.	T	C	1841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.126;QD=23.01;ReadPosRankSum=1.559;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1874,201,0
chrIV	161421	.	C	T	2961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=160;Dels=0.00;FS=4.161;HaplotypeScore=9.4250;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.425;QD=18.51;ReadPosRankSum=-0.381;SB=-1.681e+03	GT:AD:DP:GQ:PL	1/1:1,158:160:99:2994,305,0
chrIV	161584	.	T	C	6578.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=283;Dels=0.00;FS=3.249;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;MQRankSum=-0.487;QD=23.24;ReadPosRankSum=1.695;SB=-3.448e+03	GT:AD:DP:GQ:PL	1/1:1,280:283:99:6578,720,0
chrIV	162285	.	A	G	1808	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.05;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1841,204,0
chrIV	162357	.	C	G	1803	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.04;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1836,195,0
chrIV	162718	.	A	T	2111	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.22;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2144,228,0
chrIV	162819	.	T	C	1685	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.88;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1718,192,0
chrIV	162933	.	G	A	1398	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.51;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1431,153,0
chrIV	163324	.	A	G	2886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=172;Dels=0.00;FS=3.671;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-1.508;QD=16.78;ReadPosRankSum=1.691;SB=-2.003e+03	GT:AD:DP:GQ:PL	1/1:1,169:172:99:2919,318,0
chrIV	163327	.	C	A	2624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;MQRankSum=-0.139;QD=14.91;ReadPosRankSum=0.040;SB=-2.008e+03	GT:AD:DP:GQ:PL	1/1:1,175:176:99:2657,294,0
chrIV	163409	.	T	C	5246.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=234;Dels=0.00;FS=5.219;HaplotypeScore=13.2840;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=0.656;QD=22.42;ReadPosRankSum=3.362;SB=-2.281e+03	GT:AD:DP:GQ:PL	1/1:4,226:234:99:5246,573,0
chrIV	163439	.	T	C	3822.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=1.054;QD=23.30;ReadPosRankSum=2.389;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:2,160:164:99:3822,420,0
chrIV	163443	.	G	C	3660.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=22.88;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,159:160:99:3660,405,0
chrIV	163695	.	A	G	2689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.231;DP=162;Dels=0.00;FS=2.408;HaplotypeScore=19.9000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.461;QD=16.60;ReadPosRankSum=3.285;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:4,157:162:99:2722,297,0
chrIV	163809	.	A	G	2653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=151;Dels=0.00;FS=3.157;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.769;QD=17.57;ReadPosRankSum=1.686;SB=-1.717e+03	GT:AD:DP:GQ:PL	1/1:1,150:151:99:2686,294,0
chrIV	163842	.	C	A	2552	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=16.57;SB=-1.832e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:2585,273,0
chrIV	163851	.	G	A	2441	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=15.26;SB=-2.094e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:2474,264,0
chrIV	163869	.	C	T	2332	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5395;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=15.44;SB=-1.885e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:2365,249,0
chrIV	163896	.	G	A	1863	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=13.70;SB=-1.860e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:1896,198,0
chrIV	163902	.	G	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=13.31;SB=-1.738e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:1857,195,0
chrIV	163967	.	A	G	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=100;Dels=0.00;FS=6.709;HaplotypeScore=6.6234;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.759;QD=16.22;ReadPosRankSum=2.400;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:2,97:100:99:1655,183,0
chrIV	167295	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.62;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1524,156,0
chrIV	167477	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.72;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1646,174,0
chrIV	167527	.	C	T	1307	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.11;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1340,141,0
chrIV	169083	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=2.642;HaplotypeScore=7.7042;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.296;QD=20.34;ReadPosRankSum=2.388;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1640,174,0
chrIV	174995	.	T	C	582	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.087;QD=14.55;ReadPosRankSum=1.646;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:69:615,69,0
chrIV	174996	.	T	C	573	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.32;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:69:606,69,0
chrIV	174998	.	G	T	577	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.42;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:69:610,69,0
chrIV	175406	.	G	A	897	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.31;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:96:930,96,0
chrIV	175731	.	A	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.53;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1108,120,0
chrIV	175931	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2708;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.08;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1358,150,0
chrIV	175994	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.667;QD=19.87;ReadPosRankSum=1.667;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1126,120,0
chrIV	176019	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.8891;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.699;QD=19.95;ReadPosRankSum=1.428;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1190,129,0
chrIV	176273	.	C	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.48;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1569,168,0
chrIV	176423	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.44;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1176,129,0
chrIV	176448	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.62;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1108,120,0
chrIV	176496	.	A	G	706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8776;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.849;QD=13.84;ReadPosRankSum=1.664;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:81:739,81,0
chrIV	176519	.	T	C	836	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=13.70;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:93:869,93,0
chrIV	176628	.	C	T	2021	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.35;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2054,216,0
chrIV	176919	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.02;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1354,153,0
chrIV	177028	.	G	A	2540	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.28;SB=-1.458e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2573,267,0
chrIV	177160	.	T	C	1818	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.7675;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.34;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1851,201,0
chrIV	177363	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=74;Dels=0.00;FS=3.004;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.605;QD=20.51;ReadPosRankSum=2.281;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1551,168,0
chrIV	177780	.	T	C	1792	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.33;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1825,201,0
chrIV	177807	.	C	T	1875	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.32;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1908,198,0
chrIV	178389	.	G	A	1609	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7707;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.35;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1642,171,0
chrIV	178648	.	A	T	2201	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.0219;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.17;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2234,240,0
chrIV	178930	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.65;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1437,156,0
chrIV	179105	.	C	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.46;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1639,171,0
chrIV	179120	.	G	T	1602	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.63;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1635,171,0
chrIV	179245	.	C	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.06;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1947,207,0
chrIV	179328	.	G	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1701,186,0
chrIV	179441	.	G	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=15.67;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1287,135,0
chrIV	179449	.	T	C	1126	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=15.01;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1159,126,0
chrIV	179455	.	G	A	1165	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=15.33;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1198,132,0
chrIV	179487	.	C	G	1460	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=16.98;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1493,162,0
chrIV	179632	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.09;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1491,159,0
chrIV	180067	.	G	A	1866	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.62;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1899,207,0
chrIV	180086	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.16;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1828,195,0
chrIV	180121	.	G	A	1991	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.89;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2024,219,0
chrIV	180228	.	A	C	1089	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.11;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1122,123,0
chrIV	180234	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.98;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1115,123,0
chrIV	180355	.	G	A	2294	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.93;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2327,243,0
chrIV	180382	.	A	G	1993	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.73;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2026,222,0
chrIV	180644	.	A	C	2041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=2.676;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=2.120;QD=21.04;ReadPosRankSum=2.374;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2074,225,0
chrIV	180937	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1379,141,0
chrIV	181049	.	G	A	1867	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.23;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1900,195,0
chrIV	182019	.	G	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.62;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1611,174,0
chrIV	182914	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1620,168,0
chrIV	183645	.	C	T	889	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.67;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:922,99,0
chrIV	183720	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.18;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1203,126,0
chrIV	183726	.	G	A	1190	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.31;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1223,132,0
chrIV	183759	.	G	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.36;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1764,189,0
chrIV	183975	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.91;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1215,126,0
chrIV	184221	.	A	G	1934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.378;QD=21.73;ReadPosRankSum=1.693;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1967,213,0
chrIV	184320	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=6.284;HaplotypeScore=7.1536;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.672;QD=23.48;ReadPosRankSum=1.691;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2029,219,0
chrIV	184542	.	T	C	1763	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.90;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1796,195,0
chrIV	184699	.	T	G	2772	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.6987;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.53;SB=-1.633e+03	GT:AD:DP:GQ:PL	1/1:0,130:135:99:2805,303,0
chrIV	184893	.	C	T	1946	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.92;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1979,207,0
chrIV	185428	.	C	T	2244	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2293;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.02;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,115:118:99:2277,243,0
chrIV	185567	.	C	T	1690	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.86;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1723,183,0
chrIV	185683	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.97;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1494,165,0
chrIV	185746	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.40;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1422,150,0
chrIV	185908	.	G	A	1899	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=10.0633;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.44;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1932,210,0
chrIV	186151	.	T	C	853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.135;DP=47;Dels=0.00;FS=2.864;HaplotypeScore=8.0293;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.026;QD=18.15;ReadPosRankSum=2.345;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:96:886,96,0
chrIV	186841	.	C	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.89;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1292,141,0
chrIV	187299	.	G	A	1545	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.76;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1578,165,0
chrIV	188774	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.27;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1414,153,0
chrIV	189502	.	C	T	2202	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.60;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2235,231,0
chrIV	189732	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.0121;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1386,144,0
chrIV	190116	.	G	C	963	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.88;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:996,108,0
chrIV	190140	.	G	A	800	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=16.00;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:90:833,90,0
chrIV	190212	.	C	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1246,129,0
chrIV	190248	.	G	A	1168	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1201,126,0
chrIV	190764	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.346;QD=23.18;ReadPosRankSum=1.626;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1540,165,0
chrIV	190810	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.06;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1224,132,0
chrIV	190907	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.028;QD=22.63;ReadPosRankSum=1.674;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1368,147,0
chrIV	191112	.	A	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.44;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1394,150,0
chrIV	191355	.	G	A	977	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.94;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1010,111,0
chrIV	191457	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.80;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1177,123,0
chrIV	192018	.	G	A	2159	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.99;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2192,237,0
chrIV	192069	.	T	C	1669	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1702,183,0
chrIV	192278	.	G	C	1497	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.70;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1530,168,0
chrIV	192297	.	C	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.28;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1710,174,0
chrIV	192324	.	A	G	1902	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.41;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1935,210,0
chrIV	192451	.	G	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.19;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1319,144,0
chrIV	192839	.	C	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=23.10;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1858,201,0
chrIV	192855	.	T	C	2049	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=24.39;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2082,222,0
chrIV	193034	.	C	T	3029	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=23.66;SB=-1.425e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:3062,324,0
chrIV	193043	.	A	G	2844	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.22;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2877,312,0
chrIV	193118	.	A	G	2557	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=19.52;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2590,282,0
chrIV	193121	.	C	T	2577	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=19.38;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2610,279,0
chrIV	193154	.	T	C	2399	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.363;QD=18.31;ReadPosRankSum=1.705;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:1,128:131:99:2432,267,0
chrIV	193175	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=17.22;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2013,210,0
chrIV	193207	.	C	T	2184	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=17.47;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2217,240,0
chrIV	193229	.	C	T	1779	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=12.99;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,134:137:99:1812,198,0
chrIV	193242	.	T	C	1807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.946;DP=129;Dels=0.00;FS=5.232;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;MQRankSum=-0.883;QD=14.01;ReadPosRankSum=2.914;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:3,126:129:99:1840,195,0
chrIV	193254	.	A	G	2028	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=15.36;SB=-1.444e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2061,228,0
chrIV	193723	.	G	A	2735	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.60;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2768,288,0
chrIV	194241	.	T	C	2263	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.95;SB=-1.374e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2296,249,0
chrIV	194352	.	A	C	1562	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.77;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1595,177,0
chrIV	194353	.	G	A	1622	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.53;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1655,177,0
chrIV	195160	.	G	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1178,126,0
chrIV	195231	.	A	T	1709	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.77;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1742,183,0
chrIV	195366	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.54;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1422,150,0
chrIV	196482	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.66;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1640,180,0
chrIV	196851	.	A	G	1845	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1878,198,0
chrIV	197082	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.133;QD=21.75;ReadPosRankSum=2.374;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:2,63:67:99:1490,162,0
chrIV	197151	.	C	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.86;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1702,180,0
chrIV	197364	.	G	C	1704	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=24.00;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1737,189,0
chrIV	197478	.	A	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1499,165,0
chrIV	198420	.	A	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=24.18;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1266,141,0
chrIV	198659	.	G	A	2681	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.31;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2714,279,0
chrIV	198797	.	G	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1147,120,0
chrIV	199171	.	T	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.62;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1417,156,0
chrIV	199259	.	G	A	1760	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.73;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1793,189,0
chrIV	199393	.	G	A	2249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561;DP=103;Dels=0.00;FS=3.141;HaplotypeScore=12.4709;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.492;QD=21.83;ReadPosRankSum=0.875;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:1,100:103:99:2282,237,0
chrIV	199642	.	C	T	1702	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.10;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1735,183,0
chrIV	199743	.	A	T	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.458;QD=19.95;ReadPosRankSum=1.664;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2048,213,0
chrIV	199794	.	T	C	2037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=106;Dels=0.00;FS=3.794;HaplotypeScore=7.9298;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.387;QD=19.22;ReadPosRankSum=1.665;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:1,102:106:99:2070,222,0
chrIV	199926	.	G	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.42;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1511,156,0
chrIV	199937	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.049;QD=19.33;ReadPosRankSum=1.683;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1386,153,0
chrIV	200022	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.69;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1547,171,0
chrIV	200220	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.76;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1694,183,0
chrIV	200256	.	G	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.34;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1550,162,0
chrIV	200994	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.22;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1145,126,0
chrIV	201393	.	C	T	2039	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.71;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2072,222,0
chrIV	201614	.	A	G	2483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;MQRankSum=-1.136;QD=20.19;ReadPosRankSum=1.704;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2516,279,0
chrIV	202117	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.77;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1773,192,0
chrIV	202127	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.84;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1660,177,0
chrIV	202229	.	T	G	1670	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=89;Dels=0.00;FS=10.795;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.299;QD=18.76;ReadPosRankSum=2.874;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:3,85:89:99:1703,189,0
chrIV	202448	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.77;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1911,207,0
chrIV	202579	.	T	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=18.40;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1560,171,0
chrIV	202591	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.58;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1501,168,0
chrIV	202790	.	A	T	1004	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.92;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1037,111,0
chrIV	202902	.	C	T	159.06	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=80.1489;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=1.62;SB=-9.711e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:21:192,21,0
chrIV	203446	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.71;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1249,129,0
chrIV	203647	.	G	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.46;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1181,126,0
chrIV	203795	.	G	A	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=60;Dels=0.00;FS=3.906;HaplotypeScore=9.3065;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.674;QD=23.12;ReadPosRankSum=1.615;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1420,150,0
chrIV	204077	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.58;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1371,147,0
chrIV	204805	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.61;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1709,174,0
chrIV	207845	.	T	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.25;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1568,171,0
chrIV	209791	.	T	C	1634	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.76;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1667,177,0
chrIV	210091	.	A	G	1195	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.84;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1228,129,0
chrIV	210594	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.22;SB=-2.401e+01	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1798,189,0
chrIV	210686	.	A	T	555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=12.0614;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.744;QD=11.81;ReadPosRankSum=2.341;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:2,45:47:60:588,60,0
chrIV	210833	.	A	G	423	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.14;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:51:456,51,0
chrIV	211091	.	C	T	483	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.00;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:57:516,57,0
chrIV	211126	.	C	T	462	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:54:495,54,0
chrIV	211275	.	G	A	641	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=14.24;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:72:674,72,0
chrIV	211301	.	C	T	543	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.10;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:60:576,60,0
chrIV	211370	.	G	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1185,123,0
chrIV	211536	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.6500;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=25.19;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1494,156,0
chrIV	211612	.	G	T	1477	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.82;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1510,156,0
chrIV	211684	.	T	C	1161	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.667;QD=21.91;ReadPosRankSum=1.667;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1194,129,0
chrIV	211831	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=12.7093;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=1.126;QD=16.93;ReadPosRankSum=1.689;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1404,153,0
chrIV	211876	.	G	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.10;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1581,165,0
chrIV	211933	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.670;QD=19.36;ReadPosRankSum=1.686;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1485,162,0
chrIV	211978	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.2100;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.69;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1451,159,0
chrIV	212036	.	T	C	1207	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.46;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1240,135,0
chrIV	212222	.	A	G	371	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=71.2094;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=14.27;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:45:404,45,0
chrIV	212251	.	A	G	245	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=8.75;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:1,27:28:30:278,30,0
chrIV	212267	.	A	G	548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=-1.733;QD=15.22;ReadPosRankSum=1.634;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:1,34:36:63:581,63,0
chrIV	212303	.	C	T	792	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.86;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:825,87,0
chrIV	212370	.	A	T	638	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:671,69,0
chrIV	212428	.	T	A	275	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=11.96;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:33:308,33,0
chrIV	212479	.	G	C	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=0.84;SB=-1.088e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:6:53,6,0
chrIV	212482	.	T	G	45.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=1.70;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:9:78,9,0
chrIV	212488	.	A	G	126.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=4.20;SB=-1.301e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:18:159,18,0
chrIV	213023	.	T	A	769	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=16.72;SB=-2.380e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:90:802,90,0
chrIV	213112	.	A	G	734	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=14.98;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:84:767,84,0
chrIV	213530	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.88;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1557,165,0
chrIV	213539	.	C	T	1623	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0640;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.64;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1656,174,0
chrIV	213698	.	C	T	1378	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.69;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1411,153,0
chrIV	214858	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.85;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1616,168,0
chrIV	215296	.	C	T	1138	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=9.9218;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.06;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1171,126,0
chrIV	215967	.	G	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.34;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1299,144,0
chrIV	215979	.	A	G	1130	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=15.07;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1163,126,0
chrIV	220373	.	G	A	480	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=6.67;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:51:513,51,0
chrIV	220385	.	A	G	568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.82;MQ0=0;MQRankSum=-1.732;QD=7.01;ReadPosRankSum=1.689;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:66:601,66,0
chrIV	220433	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;QD=13.28;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:96:843,96,0
chrIV	220445	.	G	A	969	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=0;QD=13.65;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1002,105,0
chrIV	220463	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=15.00;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1203,126,0
chrIV	221090	.	C	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1421,147,0
chrIV	221175	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.92;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1588,168,0
chrIV	221471	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.577;QD=19.17;ReadPosRankSum=1.677;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1241,132,0
chrIV	221511	.	C	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.5461;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.28;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1650,174,0
chrIV	221893	.	C	T	3289.01	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=25.50;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3289,345,0
chrIV	221899	.	T	A	3338.01	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=24.19;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3338,345,0
chrIV	222025	.	C	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.56;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1883,195,0
chrIV	222073	.	A	G	1783	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.14;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1816,195,0
chrIV	222082	.	A	G	2012	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=17.65;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2045,222,0
chrIV	222257	.	G	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.78;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1901,195,0
chrIV	222481	.	G	A	1098	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.53;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1131,120,0
chrIV	222691	.	T	C	1750	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.03;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1783,192,0
chrIV	222741	.	C	A	1325	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1358,144,0
chrIV	223242	.	G	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1893,201,0
chrIV	223377	.	C	T	1743	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1776,192,0
chrIV	223943	.	G	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.15;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1121,117,0
chrIV	224112	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.72;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1504,159,0
chrIV	224747	.	G	A	1692	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.83;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1725,180,0
chrIV	224809	.	G	A	2191	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.08;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2224,231,0
chrIV	224854	.	G	A	2370	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.94;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2403,249,0
chrIV	225248	.	C	T	2112	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1647;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.00;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2145,225,0
chrIV	225845	.	A	G	1647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1784;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.422;QD=20.09;ReadPosRankSum=1.690;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1680,186,0
chrIV	225854	.	C	T	1621	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5065;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.26;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1654,177,0
chrIV	226059	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.40;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1685,183,0
chrIV	226148	.	A	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.74;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1533,165,0
chrIV	226209	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.43;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1962,207,0
chrIV	226314	.	C	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.36;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1592,165,0
chrIV	226472	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=23.82;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1367,144,0
chrIV	227035	.	A	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.11;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1050,117,0
chrIV	227115	.	A	G	294	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.70;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:36:327,36,0
chrIV	227127	.	A	G	126.13	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=7.42;SB=-1.131e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:18:159,18,0
chrIV	227133	.	C	T	137.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=7.22;SB=-1.441e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:18:170,18,0
chrIV	227138	.	G	A	115.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=6.07;SB=-1.723e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:15:148,15,0
chrIV	227141	.	G	A	88.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.67;MQ0=0;QD=5.21;SB=-1.755e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:12:121,12,0
chrIV	227151	.	G	C	158.06	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=7.53;SB=-2.241e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:21:191,21,0
chrIV	227285	.	T	A	1801	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=17.66;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1834,195,0
chrIV	227289	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;MQRankSum=-0.969;QD=17.24;ReadPosRankSum=1.605;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:1912,210,0
chrIV	227299	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=16.58;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1741,189,0
chrIV	227300	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=16.83;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1800,195,0
chrIV	227375	.	T	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.06;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1710,189,0
chrIV	227641	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=1;QD=20.52;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1367,147,0
chrIV	228112	.	T	G	1431	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=79;Dels=0.00;FS=3.318;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=5;MQRankSum=1.400;QD=18.11;ReadPosRankSum=1.685;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:2,76:79:99:1464,162,0
chrIV	228430	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.576;DP=72;Dels=0.00;FS=11.944;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=3;MQRankSum=2.905;QD=17.79;ReadPosRankSum=3.530;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:5,67:72:99:1314,141,0
chrIV	228436	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=2;QD=17.39;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1250,132,0
chrIV	228508	.	G	C	1430	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=19.86;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1463,159,0
chrIV	228893	.	T	C	683	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=15.52;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:716,78,0
chrIV	229033	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=17.91;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1484,159,0
chrIV	229042	.	T	C	1500	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=85;Dels=0.00;FS=3.174;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.492;QD=17.65;ReadPosRankSum=1.647;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:1,80:85:99:1533,168,0
chrIV	229260	.	T	C	762	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.77;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:87:795,87,0
chrIV	229467	.	G	A	1880	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.65;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1913,201,0
chrIV	229690	.	A	C	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=2.845;HaplotypeScore=3.3052;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=-1.547;QD=18.98;ReadPosRankSum=2.395;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1741,192,0
chrIV	229702	.	T	C	1594	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=72.9468;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=16.43;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,94:97:99:1627,180,0
chrIV	229828	.	G	C	1831	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.7085;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.27;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1864,207,0
chrIV	229843	.	A	C	1866	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.48;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,94:101:99:1899,210,0
chrIV	229868	.	T	A	1943	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=20.03;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1976,207,0
chrIV	230153	.	A	C	2003	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.56;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2036,219,0
chrIV	230620	.	T	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.39;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1511,162,0
chrIV	230646	.	A	G	1665	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.23;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1698,180,0
chrIV	230677	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.58;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1165,126,0
chrIV	230893	.	C	T	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=3.456;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.056;QD=21.28;ReadPosRankSum=-0.169;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1799,189,0
chrIV	231260	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.09;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1903,201,0
chrIV	231317	.	A	G	1744	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.27;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1777,192,0
chrIV	231400	.	A	T	1856	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0027;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.36;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1889,201,0
chrIV	231525	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.02;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1483,159,0
chrIV	231562	.	T	C	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=76;Dels=0.00;FS=9.933;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.694;QD=21.55;ReadPosRankSum=2.854;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1671,183,0
chrIV	231629	.	A	G	1789	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.65;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1822,192,0
chrIV	238389	.	G	A	1472	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.33;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1505,162,0
chrIV	238539	.	G	A	1881	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.1609;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.19;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,96:98:99:1914,207,0
chrIV	238826	.	G	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.09;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1358,141,0
chrIV	238908	.	T	G	1789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=15.137;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.927;QD=20.10;ReadPosRankSum=2.339;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1822,198,0
chrIV	238933	.	T	C	2042	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.45;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,102:105:99:2075,228,0
chrIV	239262	.	G	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.58;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1681,174,0
chrIV	239462	.	C	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.9525;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.47;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,97:101:99:1999,207,0
chrIV	239643	.	T	C	1047	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=66;Dels=0.00;FS=13.543;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.185;QD=15.86;ReadPosRankSum=2.894;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:3,63:66:99:1080,117,0
chrIV	239693	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.245;HaplotypeScore=8.1472;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=1.413;QD=19.10;ReadPosRankSum=1.003;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1523,168,0
chrIV	239727	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.35;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1368,147,0
chrIV	239755	.	C	T	990	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=16.50;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1023,111,0
chrIV	239899	.	A	G	676	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=20.48;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:75:709,75,0
chrIV	239907	.	C	T	702	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.94;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:735,78,0
chrIV	239984	.	C	T	450	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=18.00;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:51:483,51,0
chrIV	240090	.	T	C	688	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=16.00;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:78:721,78,0
chrIV	240178	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=22.50;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:843,87,0
chrIV	240232	.	G	A	842	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=22.76;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:93:875,93,0
chrIV	240238	.	C	T	712	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=20.94;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:84:745,84,0
chrIV	240240	.	G	A	740	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=22.42;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:84:773,84,0
chrIV	240258	.	G	A	383	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=13.68;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,25:28:45:416,45,0
chrIV	240297	.	A	G	580	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=20.00;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:66:613,66,0
chrIV	240375	.	G	T	648	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.25;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:72:681,72,0
chrIV	240480	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=21.23;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:75:691,75,0
chrIV	240506	.	C	A	802	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=20.05;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:835,87,0
chrIV	240532	.	C	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=19.57;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1090,114,0
chrIV	240544	.	A	G	1038	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=16.74;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1071,117,0
chrIV	240564	.	T	G	1050	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=16.15;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1083,117,0
chrIV	240610	.	C	T	710	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=14.79;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:78:743,78,0
chrIV	240612	.	A	G	665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-1.155;QD=13.85;ReadPosRankSum=1.660;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:78:698,78,0
chrIV	240647	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=-1.660;QD=15.79;ReadPosRankSum=1.660;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:84:791,84,0
chrIV	240657	.	A	C	818	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=16.69;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:851,93,0
chrIV	240868	.	G	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.06;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1339,144,0
chrIV	241065	.	A	G	840	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.54;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:873,93,0
chrIV	241125	.	G	A	836	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:96:869,96,0
chrIV	241166	.	G	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.44;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1384,144,0
chrIV	241206	.	T	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.27;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1391,150,0
chrIV	241230	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=1.118;QD=20.92;ReadPosRankSum=1.676;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1330,147,0
chrIV	241327	.	C	T	770	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=15.10;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:84:803,84,0
chrIV	241328	.	A	G	742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.053;QD=14.27;ReadPosRankSum=1.664;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:84:775,84,0
chrIV	241370	.	C	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.40;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1108,120,0
chrIV	241406	.	G	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=24.92;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1503,156,0
chrIV	241544	.	T	C	1563	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.41;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1596,174,0
chrIV	241791	.	A	C	821	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=16.76;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:854,90,0
chrIV	241816	.	G	A	867	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.3462;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=15.21;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:96:900,96,0
chrIV	241857	.	A	G	766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=63;Dels=0.00;FS=7.076;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=1.665;QD=12.16;ReadPosRankSum=3.420;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:5,58:63:87:799,87,0
chrIV	241900	.	T	C	597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.602;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;MQRankSum=1.543;QD=10.85;ReadPosRankSum=1.669;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:66:630,66,0
chrIV	241921	.	G	A	493	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=9.86;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:54:526,54,0
chrIV	241923	.	A	G	473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;MQRankSum=-1.732;QD=9.46;ReadPosRankSum=1.662;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:54:506,54,0
chrIV	241935	.	C	T	438	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4804;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.32;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:51:471,51,0
chrIV	241945	.	A	G	368	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.260;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.315;QD=8.36;ReadPosRankSum=0.472;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:45:401,45,0
chrIV	241962	.	G	A	319	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.25;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:36:352,36,0
chrIV	241990	.	C	A	304	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=6.47;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:36:337,36,0
chrIV	242001	.	G	C	220.01	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=46.1598;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;QD=4.31;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:27:253,27,0
chrIV	242036	.	C	T	465	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=7.75;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:51:498,51,0
chrIV	242056	.	C	A	447	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=7.45;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:51:480,51,0
chrIV	242073	.	A	T	453	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=8.39;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:51:486,51,0
chrIV	242081	.	A	C	482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=7.361;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;MQRankSum=2.077;QD=9.09;ReadPosRankSum=2.357;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,51:53:57:515,57,0
chrIV	242096	.	T	G	558	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=11.87;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:66:591,66,0
chrIV	242097	.	A	T	568	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=12.09;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:66:601,66,0
chrIV	242141	.	T	C	692	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=19.22;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:725,78,0
chrIV	242997	.	G	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.9279;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.30;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1259,132,0
chrIV	243004	.	G	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.64;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1268,132,0
chrIV	243234	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.47;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1454,156,0
chrIV	243379	.	G	A	973	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.17;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1006,105,0
chrIV	243421	.	C	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.38;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1085,111,0
chrIV	243568	.	G	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.90;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1993,207,0
chrIV	243616	.	C	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.57;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1876,195,0
chrIV	243985	.	A	G	2463	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.39;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2496,279,0
chrIV	244033	.	G	A	2139	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=14.4581;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.39;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2172,240,0
chrIV	244138	.	T	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.14;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1450,159,0
chrIV	244150	.	T	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.21;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1654,183,0
chrIV	244177	.	G	T	1467	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.30;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1500,165,0
chrIV	244935	.	A	G	2064	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.19;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2097,222,0
chrIV	245244	.	G	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.41;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1421,150,0
chrIV	245905	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.078;QD=21.58;ReadPosRankSum=1.681;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1479,156,0
chrIV	246213	.	T	C	2008	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1821;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.62;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2041,222,0
chrIV	246316	.	T	C	2070	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.50;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2103,228,0
chrIV	246646	.	T	C	2049	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.09;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2082,228,0
chrIV	246664	.	T	G	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.692;QD=21.85;ReadPosRankSum=1.573;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1934,213,0
chrIV	246743	.	G	C	2076	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.6751;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.40;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2109,231,0
chrIV	247340	.	C	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1717,177,0
chrIV	247465	.	A	G	1959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=7.495;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.241;QD=22.26;ReadPosRankSum=2.393;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:2,85:88:99:1992,216,0
chrIV	247738	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=2.698;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.886;QD=18.93;ReadPosRankSum=2.381;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1377,150,0
chrIV	248088	.	G	A	2532	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.02;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2565,276,0
chrIV	248311	.	T	C	2203	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.48;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2236,237,0
chrIV	248350	.	C	T	3283.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.33;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3283,345,0
chrIV	248513	.	G	C	2135	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.54;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2168,237,0
chrIV	248700	.	G	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.56;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1866,198,0
chrIV	249264	.	C	T	2444	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=25.46;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2477,258,0
chrIV	249333	.	C	T	1533	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.59;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1566,162,0
chrIV	249432	.	C	T	1112	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1145,120,0
chrIV	249537	.	C	T	2036	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.62;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2069,228,0
chrIV	250434	.	G	A	1959	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.77;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1992,210,0
chrIV	250479	.	A	G	2218	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.10;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2251,246,0
chrIV	250548	.	T	C	2642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3472;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.609;QD=24.24;ReadPosRankSum=1.700;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2675,291,0
chrIV	251017	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.12;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1617,174,0
chrIV	251082	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.912;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.108;QD=22.89;ReadPosRankSum=1.678;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1521,165,0
chrIV	251630	.	T	A	2447	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5494;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.91;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2480,267,0
chrIV	251673	.	T	C	2592	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.97;SB=-1.432e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2625,288,0
chrIV	251979	.	T	C	1801	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.09;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1834,204,0
chrIV	252063	.	T	C	1797	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.75;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1830,198,0
chrIV	252312	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.14;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1838,192,0
chrIV	252376	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.6723;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.69;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1490,165,0
chrIV	252749	.	G	T	1971	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.19;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2004,204,0
chrIV	253388	.	G	A	2364	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.51;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2397,249,0
chrIV	253818	.	A	G	2229	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=20.64;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2262,249,0
chrIV	253830	.	A	G	1955	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.85;MQ0=0;QD=19.55;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1988,216,0
chrIV	253832	.	T	A	1962	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=19.43;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1995,216,0
chrIV	253854	.	G	T	1734	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;QD=19.48;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1767,183,0
chrIV	253863	.	C	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=16.93;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1320,141,0
chrIV	253874	.	C	A	1085	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=16.95;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1118,120,0
chrIV	254289	.	G	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.25;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1248,129,0
chrIV	254451	.	G	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.00;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1551,162,0
chrIV	254813	.	T	G	721	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=16.77;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:754,84,0
chrIV	254856	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.039;QD=19.82;ReadPosRankSum=1.663;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1024,108,0
chrIV	255235	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.32;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:1,59:62:99:1293,141,0
chrIV	255389	.	C	A	1146	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.63;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1179,123,0
chrIV	255481	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4130;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.44;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1828,189,0
chrIV	255870	.	C	T	4447.01	PASS	AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=6.7660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.57;SB=-2.169e+03	GT:AD:DP:GQ:PL	1/1:0,181:181:99:4447,469,0
chrIV	256113	.	C	T	2269	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.25;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2302,237,0
chrIV	256213	.	T	C	1755	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.04;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1788,186,0
chrIV	256515	.	G	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.92;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1480,153,0
chrIV	256974	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.37;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1176,120,0
chrIV	257106	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1386,144,0
chrIV	257223	.	G	A	2019	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.04;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2052,216,0
chrIV	257569	.	G	A	1819	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.44;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1852,201,0
chrIV	257586	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.19;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1587,168,0
chrIV	257626	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.127;QD=17.63;ReadPosRankSum=1.690;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1479,159,0
chrIV	258190	.	T	C	1299	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.68;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1332,144,0
chrIV	258250	.	G	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.56;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1363,147,0
chrIV	258265	.	A	C	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.632;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.346;QD=17.90;ReadPosRankSum=1.617;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1107,120,0
chrIV	258755	.	G	A	998	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=18.83;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1031,114,0
chrIV	258793	.	G	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.64;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1338,144,0
chrIV	258800	.	C	T	1322	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=18.11;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1355,147,0
chrIV	259049	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.21;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1449,156,0
chrIV	259115	.	A	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.32;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1440,153,0
chrIV	259152	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=20.33;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1436,150,0
chrIV	259153	.	C	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=20.19;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1446,153,0
chrIV	259167	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.66;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1395,147,0
chrIV	259676	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.16;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1832,198,0
chrIV	259889	.	G	T	1895	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.9381;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.03;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1928,201,0
chrIV	259996	.	A	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.97;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1564,162,0
chrIV	260003	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.12;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1602,177,0
chrIV	260036	.	G	A	1483	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.32;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1516,159,0
chrIV	260180	.	T	C	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.687;QD=22.99;ReadPosRankSum=1.687;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1803,198,0
chrIV	260243	.	C	T	2902	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.98;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2935,306,0
chrIV	260466	.	A	G	1255	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.27;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1288,138,0
chrIV	260711	.	T	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=75;Dels=0.00;FS=6.198;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.345;QD=21.43;ReadPosRankSum=2.384;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1640,180,0
chrIV	261197	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.44;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1649,180,0
chrIV	261257	.	G	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.93;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1853,192,0
chrIV	261364	.	C	G	3097	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.46;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:3130,342,0
chrIV	261521	.	A	G	2208	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.235;HaplotypeScore=8.5390;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.927;QD=22.30;ReadPosRankSum=1.697;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2241,243,0
chrIV	261828	.	T	C	2654	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=126;Dels=0.00;FS=8.555;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.679;QD=21.06;ReadPosRankSum=2.391;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:2,123:126:99:2687,288,0
chrIV	262380	.	C	T	2143	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.35;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2176,228,0
chrIV	263811	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.48;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1408,153,0
chrIV	264134	.	C	G	1223	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.52;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1256,138,0
chrIV	264197	.	G	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.86;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1158,129,0
chrIV	264290	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.97;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1411,147,0
chrIV	264299	.	G	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=18.36;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1447,147,0
chrIV	264791	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.003;QD=16.42;ReadPosRankSum=1.687;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1297,144,0
chrIV	265445	.	G	A	930	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=15.25;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:963,105,0
chrIV	265452	.	T	G	796	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=13.96;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:93:829,93,0
chrIV	265606	.	G	T	1160	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.09;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1193,123,0
chrIV	265807	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=15.43;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1005,111,0
chrIV	265841	.	G	A	1098	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.96;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1131,120,0
chrIV	265986	.	G	A	2289	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.72;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2322,237,0
chrIV	266029	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1423,150,0
chrIV	266398	.	A	G	1842	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.01;FS=3.468;HaplotypeScore=8.4203;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.476;QD=22.74;ReadPosRankSum=1.646;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1875,201,0
chrIV	266620	.	A	G	1464	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.85;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1497,162,0
chrIV	267394	.	G	C	1451	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.34;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1484,162,0
chrIV	268132	.	T	C	1993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.2179;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.655;QD=22.14;ReadPosRankSum=1.694;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2026,222,0
chrIV	269477	.	A	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.55;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1184,129,0
chrIV	269772	.	C	T	2429	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.79;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2462,261,0
chrIV	270142	.	A	T	3780.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=165;Dels=0.00;FS=7.237;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.290;QD=22.91;ReadPosRankSum=2.375;SB=-1.779e+03	GT:AD:DP:GQ:PL	1/1:2,163:165:99:3780,402,0
chrIV	271458	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.73;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1414,153,0
chrIV	271629	.	C	G	1843	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.94;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1876,201,0
chrIV	271659	.	C	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.09;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1668,180,0
chrIV	271671	.	T	C	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.243;QD=19.53;ReadPosRankSum=2.320;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1517,168,0
chrIV	271799	.	C	G,T	251.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.012;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=292.4388;MLEAC=1,1;MLEAF=0.500,0.500;MQ=42.70;MQ0=0;MQRankSum=5.528;QD=3.14;ReadPosRankSum=-7.272;SB=-1.013e+02	GT:AD:DP:GQ:PL	1/2:42,22,14:80:38:311,68,38,243,0,234
chrIV	272385	.	A	C	1849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.791;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-1.294;QD=23.11;ReadPosRankSum=1.688;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1882,204,0
chrIV	272445	.	C	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0494;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.94;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2068,222,0
chrIV	273881	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1002,105,0
chrIV	274370	.	C	T	1425	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.92;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1458,156,0
chrIV	274589	.	T	C	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=3.397;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.627;QD=20.43;ReadPosRankSum=1.585;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:1,93:95:99:1974,210,0
chrIV	274736	.	A	C	1611	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.48;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1644,177,0
chrIV	274809	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.20;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1432,153,0
chrIV	274851	.	C	T	1481	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.44;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1514,156,0
chrIV	274870	.	A	C	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=0.421;QD=21.11;ReadPosRankSum=1.685;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1616,174,0
chrIV	274908	.	A	G	1133	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.88;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1166,129,0
chrIV	275038	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.77;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1654,177,0
chrIV	275070	.	T	A	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=76;Dels=0.03;FS=4.890;HaplotypeScore=7.8094;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.047;QD=20.67;ReadPosRankSum=1.498;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1604,171,0
chrIV	275118	.	T	C	1797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=21.9654;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.155;QD=20.90;ReadPosRankSum=1.608;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1830,198,0
chrIV	275205	.	A	G	998	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.76;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1031,111,0
chrIV	275448	.	T	C	1537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.029;QD=21.65;ReadPosRankSum=1.682;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1570,171,0
chrIV	275501	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.35;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1437,156,0
chrIV	275637	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.191;DP=74;Dels=0.00;FS=13.946;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.586;QD=19.15;ReadPosRankSum=3.287;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:4,70:74:99:1450,159,0
chrIV	275721	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.70;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1399,153,0
chrIV	275730	.	C	T	1339	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.92;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1372,144,0
chrIV	275865	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.49;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1570,171,0
chrIV	275877	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.77;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1476,156,0
chrIV	275949	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.50;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1409,144,0
chrIV	276066	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=3.059;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.441;QD=19.59;ReadPosRankSum=2.309;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1404,156,0
chrIV	276105	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.466;QD=16.74;ReadPosRankSum=1.679;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1121,120,0
chrIV	276194	.	A	G	1015	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.52;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1048,114,0
chrIV	276204	.	G	A	964	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.90;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:997,108,0
chrIV	276549	.	G	T	1760	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.86;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1793,189,0
chrIV	276677	.	C	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.48;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1601,165,0
chrIV	277276	.	C	T	2309	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.86;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2342,249,0
chrIV	278671	.	C	T	1640	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.25;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1673,180,0
chrIV	278692	.	G	A	1689	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7793;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.87;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1722,186,0
chrIV	279031	.	T	C	1974	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.69;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2007,219,0
chrIV	280173	.	T	C	1529	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.84;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1562,171,0
chrIV	280191	.	T	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.33;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1436,159,0
chrIV	280227	.	G	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.45;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1762,186,0
chrIV	280751	.	A	G	1128	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.14;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1161,126,0
chrIV	280802	.	A	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.62;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1225,135,0
chrIV	280847	.	G	A	1617	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.73;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1650,168,0
chrIV	281102	.	A	G	843	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:96:876,96,0
chrIV	281207	.	C	T	1363	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.20;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1396,150,0
chrIV	281213	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.97;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1331,138,0
chrIV	281306	.	C	A	1069	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.38;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1102,123,0
chrIV	281327	.	T	C	918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=1.189;QD=18.00;ReadPosRankSum=1.664;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:951,105,0
chrIV	281351	.	G	A	964	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.19;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:997,108,0
chrIV	281392	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.39;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1007,108,0
chrIV	281474	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=3.522;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.622;QD=21.72;ReadPosRankSum=1.677;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1423,159,0
chrIV	281647	.	A	G	2065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=5.658;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.113;QD=22.20;ReadPosRankSum=1.582;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2098,231,0
chrIV	281966	.	T	A	2652	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.22;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2685,288,0
chrIV	281974	.	A	G	2587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=128;Dels=0.00;FS=10.698;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=1.072;QD=20.21;ReadPosRankSum=2.944;SB=-1.420e+03	GT:AD:DP:GQ:PL	1/1:3,123:128:99:2620,288,0
chrIV	282024	.	T	A	2623	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.29;SB=-1.814e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2656,279,0
chrIV	282544	.	A	G	2061	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.40;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2094,231,0
chrIV	283407	.	C	A	2981	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.29;SB=-1.481e+03	GT:AD:DP:GQ:PL	1/1:0,125:128:99:3014,327,0
chrIV	283730	.	A	G	2051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.164;QD=21.59;ReadPosRankSum=1.659;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2084,228,0
chrIV	283790	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=16.89;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1367,153,0
chrIV	283794	.	A	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.84;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1407,153,0
chrIV	283814	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.435;QD=20.49;ReadPosRankSum=1.683;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1488,162,0
chrIV	283896	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.361;QD=21.54;ReadPosRankSum=1.670;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1239,135,0
chrIV	284171	.	C	T	2097	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.27;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2130,225,0
chrIV	284463	.	A	G	1999	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.41;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2032,225,0
chrIV	284746	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.03;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1610,168,0
chrIV	285457	.	C	T	2244	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.17;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2277,243,0
chrIV	285472	.	C	T	1806	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.76;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1839,192,0
chrIV	285505	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.32;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1443,159,0
chrIV	285631	.	T	C	2686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=132;Dels=0.00;FS=4.674;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.076;QD=20.35;ReadPosRankSum=1.706;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:1,131:132:99:2719,291,0
chrIV	285994	.	A	C	1951	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1984,219,0
chrIV	286189	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.04;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1476,156,0
chrIV	286258	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.14;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1660,180,0
chrIV	286619	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=55;Dels=0.00;FS=5.710;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.058;QD=17.62;ReadPosRankSum=2.752;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:3,50:55:99:1002,108,0
chrIV	286857	.	T	A	1393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.999;QD=16.20;ReadPosRankSum=0.509;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1426,156,0
chrIV	287031	.	G	A	1474	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.68;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1507,156,0
chrIV	287439	.	C	T	1434	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.41;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1467,153,0
chrIV	287535	.	T	C	1231	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.86;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1264,135,0
chrIV	288063	.	G	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.15;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1343,147,0
chrIV	288140	.	G	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.0781;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.37;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1137,120,0
chrIV	288588	.	C	T	1685	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1718,180,0
chrIV	288760	.	C	T	1465	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.42;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1498,156,0
chrIV	288918	.	C	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.34;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1740,183,0
chrIV	288945	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.14;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1851,192,0
chrIV	289365	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.51;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1489,159,0
chrIV	290079	.	C	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.62;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2024,219,0
chrIV	290430	.	C	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.47;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1707,177,0
chrIV	291081	.	C	T	1017	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.5447;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.49;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1050,114,0
chrIV	291246	.	G	A	920	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.44;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:953,99,0
chrIV	291309	.	G	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=24.23;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1317,138,0
chrIV	291351	.	G	A	1846	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=23.07;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1879,198,0
chrIV	291369	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=22.38;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1801,192,0
chrIV	291387	.	G	A	1628	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=20.35;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1661,180,0
chrIV	291408	.	A	G	1234	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.15;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1267,138,0
chrIV	291582	.	G	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.03;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1535,159,0
chrIV	291726	.	T	A	873	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=13.43;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:906,102,0
chrIV	291738	.	T	C	716	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=6.929;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.96;MQ0=0;MQRankSum=-1.365;QD=10.69;ReadPosRankSum=2.375;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:87:749,87,0
chrIV	291748	.	C	T	723	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2772;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=10.63;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:84:756,84,0
chrIV	291765	.	C	T	629	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=9.53;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:72:662,72,0
chrIV	291812	.	C	T	1136	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=16.71;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1169,123,0
chrIV	292210	.	G	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=19.55;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1304,141,0
chrIV	292219	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=20.41;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1380,150,0
chrIV	292277	.	A	G	1469	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;QD=21.29;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1502,165,0
chrIV	292317	.	C	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=94.9057;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=16.73;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:1857,201,0
chrIV	292351	.	C	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=14.16;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1690,180,0
chrIV	292352	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=14.37;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,117:118:99:1729,183,0
chrIV	292500	.	G	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.72;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1098,114,0
chrIV	292503	.	T	C	998	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.83;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1031,111,0
chrIV	292517	.	G	A	974	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=17.71;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1007,105,0
chrIV	292555	.	A	G	560	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=12.44;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:63:593,63,0
chrIV	292574	.	T	A	358	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=7.62;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:42:391,42,0
chrIV	292591	.	A	G	629	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=10.48;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:78:662,78,0
chrIV	292597	.	C	T	688	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.632;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;MQRankSum=1.097;QD=11.47;ReadPosRankSum=0.058;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:81:721,81,0
chrIV	292605	.	G	A	834	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.83;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:96:867,96,0
chrIV	292611	.	T	C	899	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=30.43;MQ0=0;QD=13.83;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:932,105,0
chrIV	292735	.	C	T	1772	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.35;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1805,186,0
chrIV	292751	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.07;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1387,150,0
chrIV	292776	.	A	G	878	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0699;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.323;QD=14.88;ReadPosRankSum=1.674;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:911,99,0
chrIV	294427	.	A	G	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.839;DP=69;Dels=0.00;FS=2.627;HaplotypeScore=7.4745;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-1.515;QD=18.00;ReadPosRankSum=2.898;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1275,138,0
chrIV	294767	.	G	A	2170	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.49;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2203,228,0
chrIV	294768	.	G	A	2131	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.10;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2164,225,0
chrIV	295060	.	T	C	2501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=114;Dels=0.00;FS=6.379;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.088;QD=21.94;ReadPosRankSum=2.406;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:2,110:114:99:2534,273,0
chrIV	295520	.	T	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.85;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1224,132,0
chrIV	295526	.	A	G	1130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.462;QD=18.83;ReadPosRankSum=1.675;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1163,126,0
chrIV	295556	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.39;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1379,144,0
chrIV	295928	.	T	C	1689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.217;HaplotypeScore=6.7635;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.081;QD=19.64;ReadPosRankSum=1.692;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1722,189,0
chrIV	296618	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.19;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1631,174,0
chrIV	296743	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.58;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1069,117,0
chrIV	296793	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.24;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1145,123,0
chrIV	296817	.	A	G	1252	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.083;QD=18.97;ReadPosRankSum=0.108;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:1,63:66:99:1285,141,0
chrIV	297184	.	A	G	1992	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.89;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2025,219,0
chrIV	297926	.	C	T	2823	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5432;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.55;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2856,294,0
chrIV	298092	.	G	A	3884.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3884,411,0
chrIV	298579	.	T	C	1981	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.69;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2014,219,0
chrIV	298871	.	C	T	1032	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1065,111,0
chrIV	299385	.	T	A	2007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.498;QD=23.07;ReadPosRankSum=1.692;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2040,213,0
chrIV	299792	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.93;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1776,183,0
chrIV	300204	.	A	T	942	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=47;Dels=0.04;FS=4.973;HaplotypeScore=9.0707;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.181;QD=20.04;ReadPosRankSum=1.654;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:975,102,0
chrIV	300521	.	C	G	1534	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.56;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1567,168,0
chrIV	301022	.	C	T	1067	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=14.04;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1100,111,0
chrIV	301033	.	G	A	973	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=12.16;SB=-1.540e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1006,108,0
chrIV	305375	.	A	G	971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=57;Dels=0.00;FS=13.523;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.171;QD=17.04;ReadPosRankSum=2.921;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:4,53:57:91:1004,91,0
chrIV	305599	.	G	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.53;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1244,129,0
chrIV	305680	.	C	T	1489	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.68;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1522,159,0
chrIV	307571	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.57;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1288,138,0
chrIV	307685	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.85;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1235,126,0
chrIV	307984	.	T	C	1626	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.9562;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.12;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1659,180,0
chrIV	308096	.	C	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.51;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1672,180,0
chrIV	308170	.	A	G	2485	SnpCluster	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=20.71;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2518,267,0
chrIV	308173	.	C	T	1921	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.249;DP=120;Dels=0.00;FS=1.921;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=1.628;QD=16.01;ReadPosRankSum=3.220;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:4,114:120:99:1954,237,0
chrIV	308174	.	T	C	1886	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.610;DP=118;Dels=0.00;FS=1.921;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=1.197;QD=15.98;ReadPosRankSum=3.338;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:4,114:118:99:1919,234,0
chrIV	308238	.	A	G	2602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.296;DP=130;Dels=0.00;FS=2.386;HaplotypeScore=1.6584;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.126;QD=20.02;ReadPosRankSum=3.215;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:4,126:130:99:2635,291,0
chrIV	308241	.	C	T	2617	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.28;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2650,285,0
chrIV	308457	.	C	T	1631	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.97;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1664,174,0
chrIV	308552	.	G	A	1926	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.89;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1959,207,0
chrIV	308657	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.4281;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.44;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1176,126,0
chrIV	308658	.	T	G	1077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=3.062;HaplotypeScore=5.9508;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.945;QD=16.83;ReadPosRankSum=2.257;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1110,123,0
chrIV	308700	.	G	A	1842	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.81;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1875,198,0
chrIV	308773	.	T	C	2259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.479;QD=24.03;ReadPosRankSum=1.695;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2292,249,0
chrIV	308968	.	C	T	1302	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.84;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1335,138,0
chrIV	309554	.	G	T	859	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=19.09;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:96:892,96,0
chrIV	309607	.	T	C	731	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=89.8853;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=16.24;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:84:764,84,0
chrIV	309630	.	G	A	585	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=14.62;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:66:618,66,0
chrIV	309716	.	T	A	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.096;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.529;QD=23.59;ReadPosRankSum=1.664;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1236,132,0
chrIV	313065	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.797;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0694;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.192;QD=18.98;ReadPosRankSum=1.677;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1286,121,0
chrIV	315134	.	A	G	685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;MQRankSum=-1.636;QD=19.03;ReadPosRankSum=1.540;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:81:718,81,0
chrIV	317150	.	C	T	831	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.87;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:864,90,0
chrIV	317822	.	T	A	1831	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.33;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1864,195,0
chrIV	317913	.	G	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.00;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1221,126,0
chrIV	318023	.	A	G	1349	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.75;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1382,147,0
chrIV	318102	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.493;QD=20.00;ReadPosRankSum=1.613;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1193,129,0
chrIV	318156	.	A	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.64;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1065,117,0
chrIV	318226	.	T	C	1746	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.97;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1779,198,0
chrIV	318270	.	G	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.11;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1669,186,0
chrIV	318317	.	G	A	1735	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.79;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1768,183,0
chrIV	318348	.	G	A	1996	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=24.95;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2029,216,0
chrIV	318605	.	A	G	1448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.604;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.304;QD=20.99;ReadPosRankSum=2.379;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1481,156,0
chrIV	318618	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.28;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1537,165,0
chrIV	318659	.	G	A	1336	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.65;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1369,144,0
chrIV	319197	.	T	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.07;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1445,153,0
chrIV	319317	.	A	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.69;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1304,147,0
chrIV	319424	.	C	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2560;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.47;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1691,180,0
chrIV	319482	.	G	A	1741	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.34;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1774,195,0
chrIV	319641	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.33;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1212,126,0
chrIV	320124	.	A	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.0661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.79;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1913,201,0
chrIV	320177	.	C	G	2306	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.29;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2339,258,0
chrIV	320270	.	G	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1241,129,0
chrIV	320452	.	G	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=21.67;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1420,156,0
chrIV	320475	.	A	G	1424	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.64;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1457,156,0
chrIV	320548	.	T	C	2256	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.02;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,94:98:99:2289,243,0
chrIV	320589	.	T	A	1870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.143;DP=96;Dels=0.00;FS=2.128;HaplotypeScore=13.7994;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.989;QD=19.48;ReadPosRankSum=2.638;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:3,93:96:99:1903,156,0
chrIV	320785	.	G	A	2342	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5540;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.09;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2375,264,0
chrIV	320881	.	A	G	1490	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.24;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1523,165,0
chrIV	320953	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.45;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1362,147,0
chrIV	321001	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.37;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1486,156,0
chrIV	321012	.	A	G	1491	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.71;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1524,165,0
chrIV	321013	.	A	G	1448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=0.099;QD=20.69;ReadPosRankSum=1.633;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1481,159,0
chrIV	321074	.	T	G	2903	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.04;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2936,330,0
chrIV	321097	.	G	A	3497.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.71;SB=-1.707e+03	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3497,369,0
chrIV	321133	.	C	T	3064	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3928;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.04;SB=-1.750e+03	GT:AD:DP:GQ:PL	1/1:0,138:139:99:3097,327,0
chrIV	321244	.	G	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5866;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=22.21;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1077,111,0
chrIV	321292	.	C	T	996	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.75;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1029,111,0
chrIV	321295	.	G	A	1007	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.89;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1040,111,0
chrIV	321391	.	G	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.12;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1120,117,0
chrIV	321421	.	G	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.71;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1255,132,0
chrIV	321602	.	A	G	769	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.78;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:802,90,0
chrIV	321609	.	C	T	654	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.17;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:687,72,0
chrIV	321674	.	A	T	628	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.26;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:661,69,0
chrIV	321734	.	T	C	1217	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.13;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1250,135,0
chrIV	321827	.	C	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.03;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.49;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1679,177,0
chrIV	321836	.	T	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=11.7825;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=17.90;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1859,198,0
chrIV	321941	.	A	G	767	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=17.84;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:800,87,0
chrIV	321997	.	A	G	599	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.4947;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.32;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:632,69,0
chrIV	322001	.	T	G	420	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=2.7997;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=14.00;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:51:453,51,0
chrIV	322183	.	A	G	3233.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.891;QD=22.77;ReadPosRankSum=1.707;SB=-1.652e+03	GT:AD:DP:GQ:PL	1/1:1,139:142:99:3269,351,0
chrIV	322548	.	A	G	1521	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=63.9467;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.55;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1554,168,0
chrIV	322657	.	A	T	2361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=4.323;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.092;QD=25.39;ReadPosRankSum=1.694;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2394,246,0
chrIV	322680	.	A	C	1636	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.11;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1669,183,0
chrIV	323098	.	C	T	2738	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=27.38;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2771,288,0
chrIV	323200	.	G	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=26.32;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1744,183,0
chrIV	323657	.	A	G	2011	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=20.31;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2044,219,0
chrIV	323681	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=10.062;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-0.107;QD=12.84;ReadPosRankSum=2.402;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:2,102:104:99:1368,165,0
chrIV	323690	.	A	G	367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=100;Dels=0.00;FS=5.323;HaplotypeScore=71.8982;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=-2.295;QD=3.67;ReadPosRankSum=3.298;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:4,96:100:45:400,45,0
chrIV	323714	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=15.32;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1381,150,0
chrIV	323719	.	T	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;QD=15.09;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1391,153,0
chrIV	323798	.	T	C	828	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.00;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:861,93,0
chrIV	324000	.	G	A	2530	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0411;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=23.87;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2563,273,0
chrIV	324506	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1345,147,0
chrIV	324575	.	T	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.79;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1362,138,0
chrIV	324599	.	C	T	1226	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.13;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1259,132,0
chrIV	324926	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.79;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1239,132,0
chrIV	325079	.	C	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.78;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1573,171,0
chrIV	325337	.	A	C	1782	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.76;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1815,195,0
chrIV	325677	.	G	A	2125	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.43;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2158,225,0
chrIV	326199	.	T	C	999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=3.254;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-1.165;QD=17.84;ReadPosRankSum=1.606;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1032,111,0
chrIV	326210	.	G	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.16;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1197,129,0
chrIV	326469	.	C	T	1214	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.80;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1247,132,0
chrIV	326516	.	T	C	897	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=49;Dels=0.00;FS=2.650;HaplotypeScore=3.4664;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.354;QD=18.31;ReadPosRankSum=2.815;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:3,46:49:99:930,102,0
chrIV	326522	.	T	C	781	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.98;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:814,90,0
chrIV	326523	.	C	T	812	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.28;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:845,93,0
chrIV	326684	.	G	C	2310	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.19;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,106:109:99:2343,258,0
chrIV	326933	.	C	T	1118	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=16.69;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1151,126,0
chrIV	326984	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.95;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1769,195,0
chrIV	326990	.	C	T	1800	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.18;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1833,192,0
chrIV	327158	.	T	C	1733	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.88;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1766,192,0
chrIV	327170	.	G	A	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.644;QD=21.30;ReadPosRankSum=1.688;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1737,180,0
chrIV	327267	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.05;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1233,129,0
chrIV	327281	.	T	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.66;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1134,123,0
chrIV	327372	.	A	G	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=2.796;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=1.310;QD=22.17;ReadPosRankSum=2.388;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1829,204,0
chrIV	327461	.	T	C	2548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=1.426;QD=22.16;ReadPosRankSum=1.701;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:1,112:115:99:2581,279,0
chrIV	327527	.	A	G	2523	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=110;Dels=0.00;FS=9.543;HaplotypeScore=12.8235;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.548;QD=22.94;ReadPosRankSum=2.405;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:2,108:110:99:2556,285,0
chrIV	327647	.	G	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.14;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1190,120,0
chrIV	328031	.	G	T	1533	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.88;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1566,162,0
chrIV	328142	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.49;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1709,186,0
chrIV	328153	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.72;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1923,201,0
chrIV	328361	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.04;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1139,123,0
chrIV	328502	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.162;QD=21.25;ReadPosRankSum=1.644;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1712,189,0
chrIV	328781	.	A	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9701;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.22;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1433,156,0
chrIV	328835	.	A	G	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=6.239;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.351;QD=22.03;ReadPosRankSum=2.879;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:3,55:58:99:1311,141,0
chrIV	328957	.	A	C	1648	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.60;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1681,180,0
chrIV	329052	.	G	A	2791	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.1466;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.85;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:0,114:117:99:2824,303,0
chrIV	329234	.	C	A	1240	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1273,132,0
chrIV	329319	.	G	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.30;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1588,171,0
chrIV	329366	.	G	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.17;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1585,168,0
chrIV	329386	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.24;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1562,165,0
chrIV	329798	.	C	T	239	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=12.58;SB=-1.302e-02	GT:AD:DP:GQ:PL	1/1:0,19:19:30:272,30,0
chrIV	329842	.	T	C	926	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.044;QD=23.74;ReadPosRankSum=1.644;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,38:39:99:959,102,0
chrIV	330160	.	A	C	1215	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.30;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1248,138,0
chrIV	330288	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.55;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1266,141,0
chrIV	330430	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.5984;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.02;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1168,123,0
chrIV	330635	.	G	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=41.4071;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.31;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1130,117,0
chrIV	330653	.	A	C	1084	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.69;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1117,123,0
chrIV	330985	.	C	G	1320	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=21.29;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1353,150,0
chrIV	331794	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.53;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,47:49:99:990,108,0
chrIV	331815	.	C	T	821	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;DP=44;Dels=0.00;FS=3.882;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.654;QD=18.66;ReadPosRankSum=0.945;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:68:854,68,0
chrIV	331885	.	G	A	949	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.09;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:982,102,0
chrIV	332408	.	A	G	3160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=4.669;HaplotypeScore=8.4272;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.990;QD=25.08;ReadPosRankSum=1.705;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:1,125:126:99:3193,345,0
chrIV	332557	.	G	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1390,147,0
chrIV	332744	.	G	T	1858	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.11;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1891,201,0
chrIV	332754	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4296;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.84;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1700,177,0
chrIV	332781	.	C	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=16.98;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1103,120,0
chrIV	333019	.	G	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.58;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1207,126,0
chrIV	333204	.	T	C	2296	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=25.23;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2329,252,0
chrIV	334393	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.435;QD=20.68;ReadPosRankSum=1.683;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:1,69:74:99:1563,168,0
chrIV	334761	.	G	C	1695	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.18;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1728,192,0
chrIV	334805	.	A	G	2083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=93;Dels=0.00;FS=7.653;HaplotypeScore=6.6976;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.799;QD=22.40;ReadPosRankSum=0.609;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:2,89:93:99:2116,225,0
chrIV	334888	.	T	C	1201	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=16.01;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1234,135,0
chrIV	334894	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=14.76;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1184,129,0
chrIV	335332	.	A	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.82;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1143,123,0
chrIV	335392	.	A	G	871	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=13.40;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:96:904,96,0
chrIV	335410	.	C	T	743	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=12.38;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:84:776,84,0
chrIV	335428	.	C	A	904	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=14.12;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:937,99,0
chrIV	335524	.	C	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8210;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.88;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1600,177,0
chrIV	335830	.	T	C	1542	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=20.84;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1575,171,0
chrIV	336327	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.57;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1387,150,0
chrIV	336657	.	C	T	2017	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.97;SB=-1.308e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2050,213,0
chrIV	336766	.	C	T	2462	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.38;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2495,264,0
chrIV	336884	.	C	G	1906	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.42;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1939,207,0
chrIV	336922	.	C	G	2174	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.74;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,97:100:99:2207,240,0
chrIV	336943	.	T	C	2055	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.35;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2088,231,0
chrIV	337391	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.75;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2265,246,0
chrIV	337570	.	A	G	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.322;QD=18.98;ReadPosRankSum=1.695;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1798,195,0
chrIV	337582	.	C	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.58;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1952,198,0
chrIV	338341	.	G	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=26.30;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1611,165,0
chrIV	338368	.	G	A	787	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=23.15;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:90:820,90,0
chrIV	338428	.	A	G	732	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.61;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:84:765,84,0
chrIV	338485	.	G	A	670	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.93;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,27:28:75:703,75,0
chrIV	338718	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.10;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1480,156,0
chrIV	338722	.	G	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.07;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1368,147,0
chrIV	338823	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.02;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1258,129,0
chrIV	339115	.	T	C	1881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.740;DP=94;Dels=0.00;FS=8.009;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.556;QD=20.01;ReadPosRankSum=3.740;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:5,89:94:99:1914,210,0
chrIV	339391	.	A	G	1968	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.16;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2001,225,0
chrIV	339508	.	C	G	2164	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.43;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2197,240,0
chrIV	339743	.	C	T	990	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.20;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1023,105,0
chrIV	340351	.	C	T	1614	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.24;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1647,171,0
chrIV	340555	.	G	T	4252.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.41;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4252,442,0
chrIV	340962	.	C	T	2219	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=20.17;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2252,234,0
chrIV	340965	.	A	T	2120	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=19.81;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2153,225,0
chrIV	341033	.	G	A	928	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=15.21;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:961,102,0
chrIV	341171	.	T	C	1575	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.00;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1608,171,0
chrIV	341193	.	G	A	1763	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.24;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1796,195,0
chrIV	341381	.	A	G	986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.374;QD=19.33;ReadPosRankSum=1.664;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1019,114,0
chrIV	341782	.	A	G	539	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.59;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:63:572,63,0
chrIV	341812	.	G	A	1150	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.96;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1183,120,0
chrIV	341953	.	G	A	2086	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.26;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2119,219,0
chrIV	341978	.	A	C	1927	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.129;DP=92;Dels=0.00;FS=8.728;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.165;QD=20.95;ReadPosRankSum=-0.950;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1960,197,0
chrIV	342221	.	G	A	1800	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.32;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1833,189,0
chrIV	342417	.	G	A	1160	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.00;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1193,126,0
chrIV	342600	.	A	G	2808	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.53;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2841,297,0
chrIV	342650	.	T	C	2388	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.534;QD=22.32;ReadPosRankSum=1.700;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2421,270,0
chrIV	343292	.	G	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1702,177,0
chrIV	343448	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.06;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1511,159,0
chrIV	343580	.	C	T	2276	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.21;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2309,249,0
chrIV	344176	.	T	C	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=63;Dels=0.00;FS=7.314;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.219;QD=21.54;ReadPosRankSum=2.371;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:2,60:63:99:1390,150,0
chrIV	344181	.	C	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.40;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1381,153,0
chrIV	344289	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.24;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1501,156,0
chrIV	344480	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.19;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1808,201,0
chrIV	344717	.	C	G	1890	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.11;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1923,207,0
chrIV	345017	.	C	T	2175	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.39;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2208,234,0
chrIV	345134	.	T	C	2055	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.35;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2088,225,0
chrIV	345195	.	A	G	2036	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5636;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.55;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2069,231,0
chrIV	345209	.	A	G	2289	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.46;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2322,252,0
chrIV	345524	.	T	C	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.590;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-0.704;QD=16.83;ReadPosRankSum=1.678;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1127,123,0
chrIV	345541	.	A	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.61;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1311,135,0
chrIV	345627	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=63;Dels=0.00;FS=3.071;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.568;QD=20.92;ReadPosRankSum=2.254;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1351,144,0
chrIV	345639	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.39;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1410,156,0
chrIV	345766	.	C	T	1318	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.28;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1351,144,0
chrIV	345769	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=3.080;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.687;QD=20.17;ReadPosRankSum=1.677;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1324,144,0
chrIV	346111	.	T	C	1666	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.57;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1699,183,0
chrIV	346186	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.40;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1668,186,0
chrIV	346360	.	C	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.65;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1480,159,0
chrIV	346366	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.45;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1342,147,0
chrIV	346477	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.70;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1668,174,0
chrIV	346531	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.282;QD=17.05;ReadPosRankSum=1.692;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1499,165,0
chrIV	346536	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4386;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.11;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1499,162,0
chrIV	346633	.	T	C	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.075;QD=23.88;ReadPosRankSum=1.682;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1681,180,0
chrIV	346745	.	G	A	2082	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=23.13;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2115,219,0
chrIV	346773	.	A	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=23.19;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1911,201,0
chrIV	346810	.	A	C	1891	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.74;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1924,210,0
chrIV	347059	.	T	C	2488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.466;QD=23.92;ReadPosRankSum=1.632;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2521,273,0
chrIV	347078	.	A	G	2391	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.21;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2424,261,0
chrIV	347619	.	C	G	2195	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=17.42;SB=-1.509e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2228,243,0
chrIV	347623	.	G	A	2144	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.02;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2177,234,0
chrIV	347851	.	C	T	1851	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.36;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1884,198,0
chrIV	347958	.	T	C	1728	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.33;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1761,189,0
chrIV	348117	.	C	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.75;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1624,168,0
chrIV	348204	.	G	A	1052	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.46;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1085,114,0
chrIV	348352	.	C	T	1290	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.16;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1323,138,0
chrIV	348434	.	G	A	1380	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.26;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1413,147,0
chrIV	348490	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.4530;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.43;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1190,129,0
chrIV	348661	.	G	A	1267	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.62;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1300,141,0
chrIV	348719	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.98;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1274,141,0
chrIV	348778	.	G	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.58;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1213,126,0
chrIV	349051	.	C	G	1209	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.49;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1242,135,0
chrIV	349421	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.36;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1520,165,0
chrIV	349537	.	T	C	1958	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.51;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1991,216,0
chrIV	350046	.	A	G	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=8.178;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.608;QD=21.93;ReadPosRankSum=2.346;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1612,177,0
chrIV	350077	.	A	G	1480	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-0.119;QD=20.27;ReadPosRankSum=1.685;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1513,165,0
chrIV	350080	.	C	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.39;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1440,156,0
chrIV	350388	.	G	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=24.90;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1801,189,0
chrIV	350405	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=22.12;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1493,165,0
chrIV	350462	.	A	G	844	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.22;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:877,96,0
chrIV	350480	.	A	G	888	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=16.75;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:921,102,0
chrIV	350505	.	A	G	809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.933;QD=15.56;ReadPosRankSum=1.599;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:90:842,90,0
chrIV	350645	.	C	A	1747	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=22.99;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1780,186,0
chrIV	350747	.	G	A	2355	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=24.03;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2388,249,0
chrIV	350782	.	A	C	1855	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.12;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1888,207,0
chrIV	350798	.	C	A	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;MQRankSum=-0.681;QD=16.83;ReadPosRankSum=2.743;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:3,95:98:99:1682,189,0
chrIV	350799	.	A	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.03;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=16.37;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1654,189,0
chrIV	350887	.	T	C	2925	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=0.939;QD=22.33;ReadPosRankSum=1.706;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,130:131:99:2958,321,0
chrIV	351001	.	T	G	223.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.166;DP=106;Dels=0.00;FS=2.900;HaplotypeScore=29.4349;MLEAC=1;MLEAF=0.500;MQ=44.80;MQ0=0;MQRankSum=2.516;QD=2.10;ReadPosRankSum=-6.896;SB=-7.401e+01	GT:AD:DP:GQ:PL	0/1:77,29:106:99:253,0,690
chrIV	351007	.	A	T	48.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760;DP=95;Dels=0.00;FS=15.895;HaplotypeScore=32.5053;MLEAC=1;MLEAF=0.500;MQ=44.36;MQ0=0;MQRankSum=1.875;QD=0.51;ReadPosRankSum=-6.091;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:79,16:95:78:78,0,799
chrIV	351013	.	C	T	123.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.556;DP=82;Dels=0.00;FS=5.084;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=42.54;MQ0=0;MQRankSum=-2.229;QD=1.50;ReadPosRankSum=-6.387;SB=-2.100e+02	GT:AD:DP:GQ:PL	0/1:57,24:82:99:153,0,556
chrIV	351016	.	G	T	119.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;DP=86;Dels=0.00;FS=6.713;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=42.77;MQ0=0;MQRankSum=-1.141;QD=1.38;ReadPosRankSum=-5.695;SB=-1.630e+02	GT:AD:DP:GQ:PL	0/1:62,24:86:99:149,0,642
chrIV	351028	.	A	G	887	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=12.32;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:920,102,0
chrIV	351074	.	C	A	2822	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.06;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2855,300,0
chrIV	351097	.	G	A	3165	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.96;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:3198,333,0
chrIV	351207	.	G	T	3612.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.01;FS=0.000;HaplotypeScore=7.9026;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=22.86;SB=-2.097e+03	GT:AD:DP:GQ:PL	1/1:0,156:157:99:3612,381,0
chrIV	351214	.	C	A	3312.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.84;SB=-1.919e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:3312,342,0
chrIV	351250	.	T	C	1875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=3.829;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;MQRankSum=-0.892;QD=18.94;ReadPosRankSum=1.627;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1908,204,0
chrIV	351451	.	C	T	2383	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.09;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2416,273,0
chrIV	351862	.	G	A	1863	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.66;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1896,213,0
chrIV	351963	.	A	G	1813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=81;Dels=0.00;FS=3.413;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.197;QD=22.38;ReadPosRankSum=1.688;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,78:81:99:1846,198,0
chrIV	352261	.	C	T	1815	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.6129;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1848,192,0
chrIV	352697	.	T	C	2690	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.634;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.314;QD=21.02;ReadPosRankSum=1.678;SB=-1.481e+03	GT:AD:DP:GQ:PL	1/1:1,126:128:99:2723,297,0
chrIV	352902	.	G	A	1409	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1442,150,0
chrIV	353125	.	G	A	884	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:917,96,0
chrIV	353410	.	T	C	898	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.96;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:931,105,0
chrIV	353682	.	T	G	1648	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.97;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1681,180,0
chrIV	354052	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.05;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1443,156,0
chrIV	354094	.	T	G	1298	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.81;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1331,144,0
chrIV	354130	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.96;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1057,114,0
chrIV	354238	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.50;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2312,249,0
chrIV	354286	.	C	T	2460	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.85;SB=-1.319e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2493,258,0
chrIV	354623	.	A	C	1512	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.4091;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.64;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1545,165,0
chrIV	354889	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.67;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1325,141,0
chrIV	354933	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=18.76;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1046,114,0
chrIV	354940	.	C	T	939	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.06;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:972,102,0
chrIV	354974	.	A	G	711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.229;QD=13.42;ReadPosRankSum=1.602;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:81:744,81,0
chrIV	354989	.	A	C	595	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=12.93;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:69:628,69,0
chrIV	355333	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=23.42;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1719,183,0
chrIV	355467	.	A	G	1672	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=20.39;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1705,189,0
chrIV	356226	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1535,168,0
chrIV	356766	.	A	G	2210	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.91;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,108:111:99:2243,246,0
chrIV	356951	.	T	G	944	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=69;Dels=0.00;FS=4.150;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.346;QD=13.68;ReadPosRankSum=1.679;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:1,64:69:99:977,108,0
chrIV	356965	.	A	G	864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.027;QD=13.71;ReadPosRankSum=1.677;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:897,99,0
chrIV	357312	.	T	C	762	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=15.24;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:87:795,87,0
chrIV	357529	.	C	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1753,183,0
chrIV	357632	.	A	C	1833	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.08;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1866,204,0
chrIV	357802	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.31;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1022,108,0
chrIV	357936	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.504;DP=98;Dels=0.00;FS=12.428;HaplotypeScore=13.2434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.016;QD=17.05;ReadPosRankSum=3.746;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:5,93:98:99:1704,189,0
chrIV	357986	.	A	G	2466	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.71;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2499,273,0
chrIV	358050	.	G	A	1694	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.89;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1727,183,0
chrIV	358197	.	C	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.10;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1740,177,0
chrIV	358230	.	T	A	1433	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.86;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1466,153,0
chrIV	358243	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-1.642;QD=18.30;ReadPosRankSum=1.687;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1442,156,0
chrIV	358273	.	A	G	987	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.5995;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=13.52;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1020,111,0
chrIV	358299	.	T	C	1087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=9.020;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-1.293;QD=13.42;ReadPosRankSum=2.206;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1120,117,0
chrIV	358389	.	C	T	2369	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.00;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2402,255,0
chrIV	358431	.	G	A	2406	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.60;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2439,255,0
chrIV	358561	.	A	T	2120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=95;Dels=0.00;FS=6.356;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.384;QD=22.32;ReadPosRankSum=2.291;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:2,93:95:99:2153,231,0
chrIV	358707	.	T	G	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.125;QD=19.79;ReadPosRankSum=1.518;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1953,213,0
chrIV	361844	.	A	G	2244	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.37;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2277,252,0
chrIV	361942	.	A	G	2398	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.62;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2431,267,0
chrIV	363098	.	C	T	1550	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.85;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1583,165,0
chrIV	363511	.	A	G	1458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.192;QD=18.94;ReadPosRankSum=1.642;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1491,162,0
chrIV	363624	.	A	G	1698	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.21;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1731,192,0
chrIV	365790	.	G	A	1938	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.84;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1971,204,0
chrIV	365927	.	T	G	3964.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=8.2799;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.390;QD=22.78;ReadPosRankSum=1.652;SB=-2.304e+03	GT:AD:DP:GQ:PL	1/1:1,173:174:99:3964,417,0
chrIV	366283	.	G	A	1604	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.10;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1637,177,0
chrIV	366354	.	C	A	1484	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.9924;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.55;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1517,162,0
chrIV	366464	.	C	T	991	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=4.8449;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.52;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1024,111,0
chrIV	366543	.	C	T	757	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=15.14;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:84:790,84,0
chrIV	368534	.	T	A	479	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.52;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:54:512,54,0
chrIV	368620	.	G	C	650	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.41;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:75:683,75,0
chrIV	368735	.	G	A	693	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.24;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:75:726,75,0
chrIV	369366	.	C	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=9.5062;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.50;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1257,132,0
chrIV	369534	.	G	C	977	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=26.41;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1010,108,0
chrIV	369744	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.912;QD=20.68;ReadPosRankSum=1.641;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1605,174,0
chrIV	369971	.	G	T	1137	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.95;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1170,126,0
chrIV	370148	.	C	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.23;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1413,150,0
chrIV	370499	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.88;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1200,123,0
chrIV	370634	.	G	C	369	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:45:402,45,0
chrIV	370771	.	A	G	359	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=2.205;QD=17.95;ReadPosRankSum=2.079;SB=-7.033e-03	GT:AD:DP:GQ:PL	1/1:2,18:20:42:392,42,0
chrIV	370914	.	T	C	214.01	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=11.89;SB=-2.375e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:27:247,27,0
chrIV	370968	.	T	A	89.26	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.75;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,7:7:15:122,15,0
chrIV	371047	.	A	C	1572	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=26.20;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1605,174,0
chrIV	371085	.	T	C	1581	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.299;QD=24.70;ReadPosRankSum=1.678;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1614,180,0
chrIV	371142	.	A	G	882	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.51;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:41:99:915,102,0
chrIV	371204	.	T	C	963	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=16.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,58:58:99:996,111,0
chrIV	371211	.	T	C	928	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-1.375;QD=14.97;ReadPosRankSum=2.211;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,60:62:99:961,105,0
chrIV	371249	.	A	G	576	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=0;QD=11.29;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,51:51:69:609,69,0
chrIV	371263	.	A	G	483	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=8.94;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,54:54:57:516,57,0
chrIV	371266	.	C	T	522	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=9.67;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,54:54:60:555,60,0
chrIV	371308	.	G	A	655	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=15.23;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:78:688,78,0
chrIV	371437	.	T	C	1439	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.22;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1472,153,0
chrIV	371461	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.89;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1321,144,0
chrIV	371620	.	G	A	2100	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=22.58;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2133,225,0
chrIV	371665	.	T	C	1595	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.19;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1628,180,0
chrIV	371744	.	A	G	1653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=7.771;HaplotypeScore=7.3295;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.341;QD=20.41;ReadPosRankSum=2.327;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1686,186,0
chrIV	371854	.	G	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.65;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1055,111,0
chrIV	371907	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.1779;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.19;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1069,111,0
chrIV	372192	.	C	G	2169	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.84;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2202,237,0
chrIV	373723	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.60;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1335,144,0
chrIV	373728	.	T	C	1316	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.07;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1349,147,0
chrIV	377196	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.03;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1729,186,0
chrIV	377806	.	T	G	794	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200;DP=40;Dels=0.00;FS=3.606;HaplotypeScore=8.0732;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.377;QD=19.85;ReadPosRankSum=0.933;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,38:40:70:827,70,0
chrIV	378051	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.63;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1374,153,0
chrIV	378746	.	A	C	922	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=19.21;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:955,105,0
chrIV	379373	.	G	A	999	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1032,108,0
chrIV	380035	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.97;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1351,141,0
chrIV	380086	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.78;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1259,138,0
chrIV	380160	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.94;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1354,147,0
chrIV	380208	.	G	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.83;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1638,174,0
chrIV	381770	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.17;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1409,147,0
chrIV	382830	.	C	T	1322	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.44;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1355,144,0
chrIV	383065	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.15;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1683,180,0
chrIV	383153	.	G	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.70;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1213,126,0
chrIV	383227	.	C	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.62;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1196,126,0
chrIV	383229	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7090;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=17.46;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1203,123,0
chrIV	383938	.	G	A	312.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=37.9018;MLEAC=1;MLEAF=0.500;MQ=29.20;MQ0=0;MQRankSum=-0.353;QD=5.29;ReadPosRankSum=-0.227;SB=-3.960e+02	GT:AD:DP:GQ:PL	0/1:22,37:59:28:342,0,28
chrIV	383992	.	A	G	16.11	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DP=41;Dels=0.00;FS=2.250;HaplotypeScore=32.8601;MLEAC=1;MLEAF=0.500;MQ=30.93;MQ0=0;MQRankSum=-1.340;QD=0.39;ReadPosRankSum=-0.725;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,4:41:46:46,0,154
chrIV	384000	.	G	A	21.04	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DP=42;Dels=0.00;FS=2.018;HaplotypeScore=10.2748;MLEAC=1;MLEAF=0.500;MQ=30.89;MQ0=0;MQRankSum=-1.393;QD=0.50;ReadPosRankSum=0.321;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,4:42:51:51,0,170
chrIV	384001	.	G	A	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=9.4861;MLEAC=1;MLEAF=0.500;MQ=31.81;MQ0=0;MQRankSum=0.026;QD=0.46;ReadPosRankSum=0.592;SB=-7.101e+01	GT:AD:DP:GQ:PL	0/1:31,13:44:50:50,0,203
chrIV	384016	.	A	C	96.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.298;DP=45;Dels=0.00;FS=25.400;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=37.74;MQ0=0;MQRankSum=-1.998;QD=2.13;ReadPosRankSum=-1.214;SB=-2.101e+01	GT:AD:DP:GQ:PL	0/1:31,14:45:99:126,0,311
chrIV	384021	.	C	T	317.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DP=49;Dels=0.00;FS=21.067;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=38.59;MQ0=0;MQRankSum=1.516;QD=6.47;ReadPosRankSum=0.741;SB=-1.755e+02	GT:AD:DP:GQ:PL	0/1:14,35:49:99:347,0,147
chrIV	384033	.	T	G	486.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;DP=62;Dels=0.00;FS=32.738;HaplotypeScore=3.9941;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=0;MQRankSum=1.736;QD=7.84;ReadPosRankSum=-0.679;SB=-1.910e+02	GT:AD:DP:GQ:PL	0/1:17,45:62:99:516,0,160
chrIV	384035	.	A	G	169.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;DP=66;Dels=0.00;FS=26.801;HaplotypeScore=4.8262;MLEAC=1;MLEAF=0.500;MQ=42.89;MQ0=0;MQRankSum=-2.645;QD=2.56;ReadPosRankSum=0.988;SB=-4.001e+01	GT:AD:DP:GQ:PL	0/1:49,17:66:99:199,0,578
chrIV	384189	.	G	A	315.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;DP=61;Dels=0.00;FS=74.844;HaplotypeScore=1.7552;MLEAC=1;MLEAF=0.500;MQ=42.42;MQ0=0;MQRankSum=-3.300;QD=5.16;ReadPosRankSum=1.366;SB=-6.302e-03	GT:AD:DP:GQ:PL	0/1:37,24:61:99:345,0,513
chrIV	384191	.	C	G	998	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=17.21;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1031,111,0
chrIV	384204	.	C	T	896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.883;DP=48;Dels=0.00;FS=2.829;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=1.728;QD=18.67;ReadPosRankSum=1.522;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:929,99,0
chrIV	384225	.	G	A	283	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=10.11;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:33:316,33,0
chrIV	384230	.	G	T	201.19	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;DP=27;Dels=0.00;FS=1.768;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=1.779;QD=7.45;ReadPosRankSum=-0.398;SB=-1.962e+02	GT:AD:DP:GQ:PL	1/1:8,19:27:8:233,8,0
chrIV	384237	.	T	C	243	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.08;MQ0=0;QD=9.35;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:33:276,33,0
chrIV	384240	.	T	C	230	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=28;Dels=0.00;FS=2.965;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;MQRankSum=-2.364;QD=8.21;ReadPosRankSum=2.275;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:2,26:28:30:263,30,0
chrIV	384256	.	A	G	196.01	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=9.80;SB=-1.520e+02	GT:AD:DP:GQ:PL	1/1:0,19:20:27:229,27,0
chrIV	384257	.	T	C	201.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.63;MQ0=0;MQRankSum=-1.404;QD=9.57;ReadPosRankSum=1.569;SB=-1.500e+02	GT:AD:DP:GQ:PL	1/1:1,20:21:27:234,27,0
chrIV	384378	.	G	A	40.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;DP=121;Dels=0.02;FS=8.080;HaplotypeScore=49.2657;MLEAC=1;MLEAF=0.500;MQ=45.16;MQ0=0;MQRankSum=-3.417;QD=0.33;ReadPosRankSum=1.710;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:96,22:119:70:70,0,1592
chrIV	384496	.	G	A	62.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.836;DP=79;Dels=0.00;FS=34.859;HaplotypeScore=8.8935;MLEAC=1;MLEAF=0.500;MQ=49.09;MQ0=0;MQRankSum=-2.759;QD=0.78;ReadPosRankSum=-2.707;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,15:79:92:92,0,1190
chrIV	384504	.	G	A	251.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DP=96;Dels=0.00;FS=28.431;HaplotypeScore=11.3606;MLEAC=1;MLEAF=0.500;MQ=46.65;MQ0=0;MQRankSum=-3.147;QD=2.61;ReadPosRankSum=-3.745;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,31:96:99:281,0,1204
chrIV	384581	.	T	G	241.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DP=56;Dels=0.00;FS=22.544;HaplotypeScore=7.3041;MLEAC=1;MLEAF=0.500;MQ=45.08;MQ0=0;MQRankSum=-3.936;QD=4.30;ReadPosRankSum=-2.571;SB=-7.301e+01	GT:AD:DP:GQ:PL	0/1:31,23:56:99:271,0,528
chrIV	384602	.	T	G	712	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.78;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:745,81,0
chrIV	384607	.	G	A	744	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=19.58;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:777,87,0
chrIV	384915	.	A	T	384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=0.639;QD=20.21;ReadPosRankSum=1.552;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:1,18:19:45:417,45,0
chrIV	384930	.	A	T	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.026;QD=4.71;ReadPosRankSum=1.026;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,2:4:6:50,6,0
chrIV	385079	.	A	G	944	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=2;QD=16.00;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:977,105,0
chrIV	385094	.	A	G	1080	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.00;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1113,123,0
chrIV	385750	.	T	C	1093	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.31;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1126,123,0
chrIV	385961	.	G	A	458	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=17.9173;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=13.09;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:54:491,54,0
chrIV	385972	.	C	T	85.51	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=24.0851;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=2.25;SB=-4.065e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:12:118,12,0
chrIV	386094	.	T	A	798	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=20.46;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:831,87,0
chrIV	386135	.	T	C	917	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.93;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:950,102,0
chrIV	386386	.	G	C	1206	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.65;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1239,132,0
chrIV	386657	.	G	A	1022	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.93;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1055,111,0
chrIV	387140	.	T	C	910	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:943,105,0
chrIV	387289	.	A	G	797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=0.182;QD=20.97;ReadPosRankSum=1.550;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:93:830,93,0
chrIV	387294	.	G	C	777	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.45;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:87:810,87,0
chrIV	387313	.	G	A	791	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=20.28;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:824,87,0
chrIV	387371	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=23.00;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1758,183,0
chrIV	387709	.	T	C	709	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=10.58;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:84:742,84,0
chrIV	388221	.	G	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.80;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1537,165,0
chrIV	388305	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.10;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1420,156,0
chrIV	388440	.	A	G	953	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.33;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:986,108,0
chrIV	388593	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.03;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1295,135,0
chrIV	388941	.	A	C	1048	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=3.245;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.517;QD=18.07;ReadPosRankSum=1.672;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1081,120,0
chrIV	388945	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.43;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1028,108,0
chrIV	389086	.	A	T	2614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=104;Dels=0.00;FS=11.203;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.178;QD=25.13;ReadPosRankSum=2.402;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:2,102:104:99:2647,276,0
chrIV	390517	.	C	T	101.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;DP=48;Dels=0.00;FS=8.361;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=0;MQRankSum=3.067;QD=2.10;ReadPosRankSum=-2.775;SB=-2.600e+01	GT:AD:DP:GQ:PL	0/1:41,7:48:99:131,0,333
chrIV	391149	.	G	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.25;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1287,141,0
chrIV	391712	.	T	C	1853	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5449;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.72;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1886,207,0
chrIV	392653	.	T	G	1498	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1531,165,0
chrIV	392938	.	C	A	1730	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=20.60;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1763,183,0
chrIV	394228	.	G	A	850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;DP=72;Dels=0.00;FS=3.136;HaplotypeScore=29.6731;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=-0.495;QD=11.81;ReadPosRankSum=-0.247;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:96:883,96,0
chrIV	397927	.	G	A	1146	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.76;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1179,126,0
chrIV	398523	.	T	G	2259	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.2443;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.72;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2292,246,0
chrIV	399045	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1903,207,0
chrIV	400709	.	T	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.07;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2017,210,0
chrIV	404459	.	A	T	2617	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.99;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2650,282,0
chrIV	404558	.	T	G	1690	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1723,186,0
chrIV	404918	.	C	T	1782	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.41;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1815,186,0
chrIV	406099	.	C	T	1702	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.26;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1735,183,0
chrIV	407064	.	C	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.81;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1677,177,0
chrIV	407987	.	C	T	839	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.64;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:872,90,0
chrIV	408416	.	T	A	2353	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.2056;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.99;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2386,249,0
chrIV	411643	.	C	G	1667	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0764;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.37;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1700,186,0
chrIV	414546	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.66;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1748,186,0
chrIV	415090	.	T	C	2596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.621;QD=24.04;ReadPosRankSum=1.634;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2629,285,0
chrIV	415430	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.67;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2265,249,0
chrIV	416488	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.99;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1571,165,0
chrIV	418963	.	C	T	2141	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.61;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2174,228,0
chrIV	419017	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.16;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1324,144,0
chrIV	423385	.	T	G	1436	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1469,162,0
chrIV	424905	.	C	A	1816	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.70;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1849,201,0
chrIV	426326	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.48;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1163,123,0
chrIV	426781	.	A	T	1011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.662;QD=20.22;ReadPosRankSum=1.662;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:1044,108,0
chrIV	426944	.	A	G	663	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.42;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:696,75,0
chrIV	427330	.	C	T	2071	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=26.55;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2104,225,0
chrIV	428838	.	A	G	951	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=15.34;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:984,111,0
chrIV	428861	.	A	G	1089	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=14.92;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1122,123,0
chrIV	431267	.	T	C	842	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=16.51;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:875,99,0
chrIV	431674	.	G	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=8.8941;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.68;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1269,138,0
chrIV	431960	.	G	A	2036	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.88;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2069,219,0
chrIV	432174	.	C	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.49;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1225,129,0
chrIV	432463	.	G	A	1348	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.06;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1381,144,0
chrIV	432487	.	G	C	876	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.18;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:909,99,0
chrIV	433099	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.20;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1025,108,0
chrIV	433160	.	A	C	772	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.06;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,33:35:87:805,87,0
chrIV	433257	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.43;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1345,147,0
chrIV	433297	.	C	T	1789	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=26.70;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1822,192,0
chrIV	433376	.	G	A	776	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.40;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:809,84,0
chrIV	433396	.	A	G	564	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=14.46;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:66:597,66,0
chrIV	433401	.	C	T	554	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=12.88;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:60:587,60,0
chrIV	433591	.	T	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.00;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1551,162,0
chrIV	433703	.	T	C	1850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=2.976;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.304;QD=21.51;ReadPosRankSum=2.307;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1883,204,0
chrIV	434124	.	A	G	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;MQRankSum=-0.796;QD=20.81;ReadPosRankSum=1.498;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:1,73:77:99:1635,180,0
chrIV	434129	.	T	C	1370	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=18.51;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1403,153,0
chrIV	434178	.	G	A	2056	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=17.6220;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=25.70;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2089,216,0
chrIV	434468	.	G	A	298	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=0;QD=22.92;SB=-8.100e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:36:331,36,0
chrIV	434492	.	C	T	297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.347;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=2;MQRankSum=0.116;QD=17.47;ReadPosRankSum=1.273;SB=-8.388e+01	GT:AD:DP:GQ:PL	1/1:1,16:17:36:330,36,0
chrIV	434516	.	G	C	350	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=2;QD=19.44;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:42:383,42,0
chrIV	434582	.	C	T	52.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=13.24;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:0,4:4:9:85,9,0
chrIV	434589	.	G	A	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=12.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chrIV	434590	.	C	T	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=1;QD=8.59;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:6:57,6,0
chrIV	434648	.	C	T	192.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=10;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=1;MQRankSum=-0.751;QD=19.20;ReadPosRankSum=0.751;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,9:10:24:225,24,0
chrIV	434679	.	T	C	195.01	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.15;MQ0=1;QD=19.50;SB=-2.799e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:27:228,27,0
chrIV	434684	.	A	G	156.06	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.17;MQ0=1;QD=17.34;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,8:9:21:189,21,0
chrIV	434693	.	G	A	75.51	PASS	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=18.88;SB=-2.955e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:12:108,12,0
chrIV	434695	.	G	T	81.51	PASS	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=20.38;SB=-2.655e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:12:114,12,0
chrIV	434776	.	T	A	938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;MQRankSum=-1.155;QD=12.03;ReadPosRankSum=1.688;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:971,102,0
chrIV	434834	.	C	T	2563	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=10.4618;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=20.02;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2596,279,0
chrIV	434864	.	A	T	2331	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=22.63;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2364,246,0
chrIV	435072	.	T	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=24.76;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1568,171,0
chrIV	435200	.	G	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.82;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1407,144,0
chrIV	435202	.	A	C	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-1.567;QD=20.73;ReadPosRankSum=1.677;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1360,147,0
chrIV	435246	.	T	C	950	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=17.59;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:983,108,0
chrIV	435289	.	A	G	51.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=2.9821;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.720;QD=8.66;ReadPosRankSum=1.380;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,4:6:9:84,9,0
chrIV	435291	.	A	T	49.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=5;Dels=0.00;FS=6.021;HaplotypeScore=1.9905;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.727;QD=9.99;ReadPosRankSum=0.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,4:5:9:82,9,0
chrIV	435518	.	A	T	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=62;Dels=0.00;FS=3.082;HaplotypeScore=3.9544;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.175;QD=18.81;ReadPosRankSum=2.211;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1199,129,0
chrIV	435532	.	T	C	1078	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=1.476;QD=19.96;ReadPosRankSum=1.604;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1111,120,0
chrIV	435564	.	T	C	1253	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.54;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1286,138,0
chrIV	435820	.	A	G	800	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.05;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:833,90,0
chrIV	435908	.	G	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=47.30;MQ0=0;QD=19.87;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1245,129,0
chrIV	436026	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.87;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1314,141,0
chrIV	436162	.	A	G	400	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.38;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:48:433,48,0
chrIV	436237	.	C	T	948	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.34;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:981,105,0
chrIV	436257	.	G	A	1249	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.04;FS=0.000;HaplotypeScore=7.9873;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.59;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1282,132,0
chrIV	436482	.	T	A	2453	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=25.03;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2486,261,0
chrIV	436525	.	C	T	3183	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=4.3676;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=24.11;SB=-1.501e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3216,345,0
chrIV	436994	.	T	C	2539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-0.277;QD=21.34;ReadPosRankSum=1.674;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2572,273,0
chrIV	437035	.	C	A	2063	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=20.63;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2096,216,0
chrIV	437130	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.44;MQ0=0;MQRankSum=-1.542;QD=21.44;ReadPosRankSum=1.685;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1598,174,0
chrIV	437210	.	C	T	53.97	filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.99;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chrIV	437227	.	C	A	48.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=12.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:4:9:81,9,0
chrIV	437229	.	T	C	48.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=12.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,3:4:9:81,9,0
chrIV	437637	.	C	T	2961	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=13.1425;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=21.00;SB=-1.463e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:2994,318,0
chrIV	437695	.	T	G	2095	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=23.54;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2128,237,0
chrIV	437881	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3657;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=15.73;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,68:73:99:1181,132,0
chrIV	437890	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=4.956;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.192;QD=17.53;ReadPosRankSum=1.684;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1313,144,0
chrIV	437896	.	G	A	1356	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.84;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1389,144,0
chrIV	437955	.	A	G	2180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=104;Dels=0.00;FS=5.675;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.155;QD=20.96;ReadPosRankSum=2.933;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:3,101:104:99:2213,240,0
chrIV	438868	.	T	C	1659	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.07;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1692,189,0
chrIV	439479	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=4.710;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.756;QD=22.65;ReadPosRankSum=1.683;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1641,183,0
chrIV	439746	.	A	T	1995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.155;QD=22.17;ReadPosRankSum=1.694;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2028,219,0
chrIV	439768	.	T	C	1876	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.9363;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.81;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1909,204,0
chrIV	439851	.	C	G	2770	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.51;SB=-1.486e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2803,294,0
chrIV	440889	.	T	C	2403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.117;QD=22.25;ReadPosRankSum=1.700;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2436,267,0
chrIV	441071	.	A	G	1745	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,84:89:99:1778,198,0
chrIV	441238	.	T	G	2856	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=4.028;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.595;QD=21.31;ReadPosRankSum=0.853;SB=-1.392e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:2889,318,0
chrIV	441367	.	C	T	1918	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5818;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=18.09;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1951,204,0
chrIV	441465	.	A	G	2729	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.83;SB=-1.553e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2762,306,0
chrIV	441629	.	G	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.35;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1317,141,0
chrIV	441636	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=-1.138;QD=18.96;ReadPosRankSum=1.683;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1360,150,0
chrIV	441738	.	C	T	1383	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.29;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1416,147,0
chrIV	441971	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.25;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1684,177,0
chrIV	442273	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1380,150,0
chrIV	442843	.	T	C	1735	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.79;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1768,186,0
chrIV	443218	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=4.663;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.644;QD=16.10;ReadPosRankSum=1.601;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1305,141,0
chrIV	443547	.	A	G	1068	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1101,117,0
chrIV	443786	.	C	T	4122.01	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.25;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4122,435,0
chrIV	444518	.	T	C	1079	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.69;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1112,123,0
chrIV	445249	.	A	G	1205	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.52;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1238,132,0
chrIV	445581	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.093;QD=20.00;ReadPosRankSum=1.626;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1333,147,0
chrIV	445817	.	C	T	2630	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.81;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2663,276,0
chrIV	445993	.	A	G	1118	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.70;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1151,126,0
chrIV	446016	.	G	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.89;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1215,126,0
chrIV	446066	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.6867;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.163;QD=20.04;ReadPosRankSum=1.637;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1496,165,0
chrIV	446126	.	T	C	1989	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.50;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2022,216,0
chrIV	446573	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.938;QD=26.23;ReadPosRankSum=1.660;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1292,141,0
chrIV	446658	.	C	T	841	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.03;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:90:874,90,0
chrIV	446874	.	C	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.90;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1071,120,0
chrIV	446954	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3019;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.07;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1717,177,0
chrIV	447357	.	C	T	1974	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.93;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2007,210,0
chrIV	447952	.	G	C	2594	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9713;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.80;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2627,282,0
chrIV	448175	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.356;QD=19.07;ReadPosRankSum=1.431;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:910,99,0
chrIV	448388	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.54;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1566,171,0
chrIV	448634	.	G	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.00;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1461,159,0
chrIV	449024	.	A	G	2199	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.15;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2232,246,0
chrIV	449471	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.37;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1447,150,0
chrIV	449477	.	C	G	1245	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.04;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1278,138,0
chrIV	449521	.	A	G	1036	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.55;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1069,114,0
chrIV	449562	.	G	A	1036	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=21.14;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1069,111,0
chrIV	449566	.	G	C	936	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=19.10;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,48:49:99:969,105,0
chrIV	449578	.	T	C	869	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.21;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:96:902,96,0
chrIV	449579	.	T	C	851	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:96:884,96,0
chrIV	449650	.	G	T	953	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.69;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:99:986,108,0
chrIV	449709	.	A	G	762	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=19.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:87:795,87,0
chrIV	449722	.	A	T	372	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.765;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-2.627;QD=12.40;ReadPosRankSum=2.765;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:3,27:30:54:405,54,0
chrIV	449727	.	C	A	344	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=14.33;SB=-7.608e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:39:377,39,0
chrIV	449742	.	T	C	209.01	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=13.06;SB=-2.354e-02	GT:AD:DP:GQ:PL	1/1:0,16:16:27:242,27,0
chrIV	449759	.	T	A	67.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;DP=11;Dels=0.00;FS=14.771;HaplotypeScore=3.6562;MLEAC=1;MLEAF=0.500;MQ=34.79;MQ0=0;MQRankSum=0.365;QD=6.10;ReadPosRankSum=-1.036;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:5,6:11:12:97,0,12
chrIV	449761	.	T	A	63.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;DP=13;Dels=0.00;FS=20.792;HaplotypeScore=3.7736;MLEAC=1;MLEAF=0.500;MQ=44.61;MQ0=0;MQRankSum=0.296;QD=4.85;ReadPosRankSum=-0.895;SB=-2.836e+00	GT:AD:DP:GQ:PL	0/1:3,10:13:14:93,0,14
chrIV	449770	.	T	C	245	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=13.61;SB=-2.802e+01	GT:AD:DP:GQ:PL	1/1:1,17:18:30:278,30,0
chrIV	449988	.	G	A	85.51	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=12.22;SB=-6.155e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:12:118,12,0
chrIV	450139	.	C	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.60;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1125,120,0
chrIV	450232	.	G	A	960	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.00;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,39:40:99:993,105,0
chrIV	452236	.	T	C	1801	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.80;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1834,195,0
chrIV	452728	.	T	C	672	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.36;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:78:705,78,0
chrIV	452771	.	C	T	635	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:668,69,0
chrIV	453755	.	T	C	3108	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-1.674e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:3141,336,0
chrIV	453843	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.81;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1968,210,0
chrIV	453852	.	A	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.80;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1864,195,0
chrIV	453908	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.71;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1814,189,0
chrIV	454057	.	A	G	2002	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.9769;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.00;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2035,219,0
chrIV	454502	.	C	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.38;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1113,120,0
chrIV	455316	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.70;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1218,126,0
chrIV	455506	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.25;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1682,183,0
chrIV	455545	.	A	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.65;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1121,117,0
chrIV	455618	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.69;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1204,132,0
chrIV	455752	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.47;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1162,129,0
chrIV	456007	.	G	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.97;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1527,168,0
chrIV	456394	.	A	T	1449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.404;QD=19.58;ReadPosRankSum=1.545;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1482,153,0
chrIV	457253	.	C	T	2053	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.35;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2086,222,0
chrIV	457403	.	T	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.37;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1621,174,0
chrIV	457671	.	C	T	2686	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.6935;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.84;SB=-1.602e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2719,282,0
chrIV	457907	.	T	C	2876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.114;QD=23.38;ReadPosRankSum=1.704;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2909,315,0
chrIV	458036	.	G	A	2189	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.2357;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.90;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2222,234,0
chrIV	458045	.	C	T	2238	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7201;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.05;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2271,246,0
chrIV	458153	.	A	T	2198	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.9718;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.34;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2231,246,0
chrIV	458209	.	C	T	3544.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.32;SB=-1.884e+03	GT:AD:DP:GQ:PL	1/1:0,149:152:99:3544,367,0
chrIV	458401	.	G	A	1840	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.22;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1873,198,0
chrIV	458419	.	G	A	2327	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.72;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2360,246,0
chrIV	458653	.	T	C	2340	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.08;SB=-1.361e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2373,261,0
chrIV	458851	.	G	A	2736	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.71;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2769,291,0
chrIV	459567	.	G	A	2716	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.47;SB=-1.400e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2749,285,0
chrIV	459811	.	A	G	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=62;Dels=0.00;FS=3.077;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.056;QD=21.58;ReadPosRankSum=2.371;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1371,144,0
chrIV	460581	.	G	T	1326	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.11;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1359,144,0
chrIV	467714	.	C	T	2579	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2612,273,0
chrIV	469779	.	A	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.55;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1517,159,0
chrIV	470435	.	A	G	2015	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.16;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2048,228,0
chrIV	470580	.	A	G	2001	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.99;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2034,225,0
chrIV	470731	.	A	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.05;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1461,150,0
chrIV	470848	.	C	T	2075	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.39;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2108,222,0
chrIV	471230	.	C	G	1333	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=24.69;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1366,144,0
chrIV	471249	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.59;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1130,123,0
chrIV	471261	.	A	G	999	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.85;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1032,114,0
chrIV	471771	.	T	C	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.949;DP=113;Dels=0.00;FS=6.456;HaplotypeScore=9.1359;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=1.187;QD=17.00;ReadPosRankSum=2.341;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:2,111:113:99:1954,216,0
chrIV	474265	.	G	A	1203	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=18.51;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1236,138,0
chrIV	474320	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.929;QD=15.35;ReadPosRankSum=1.690;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1292,141,0
chrIV	474321	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=6.636;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.137;QD=15.21;ReadPosRankSum=2.359;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:2,79:82:99:1280,138,0
chrIV	474625	.	T	G	2047	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.230;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=1.025;QD=20.89;ReadPosRankSum=1.520;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2080,231,0
chrIV	474628	.	A	G	2089	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.10;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2122,234,0
chrIV	476097	.	A	G	791	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.38;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:824,90,0
chrIV	476215	.	C	A	1488	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1521,162,0
chrIV	476360	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.44;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1304,144,0
chrIV	476408	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1305,144,0
chrIV	476684	.	G	A	2973	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.57;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3006,312,0
chrIV	476875	.	G	C	2274	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.69;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,92:96:99:2307,252,0
chrIV	477034	.	A	G	2624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=118;Dels=0.00;FS=3.048;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.990;QD=22.24;ReadPosRankSum=2.387;SB=-1.489e+03	GT:AD:DP:GQ:PL	1/1:2,116:118:99:2657,291,0
chrIV	477202	.	T	A	3066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.9423;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.577;QD=22.54;ReadPosRankSum=1.706;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:1,135:136:99:3099,321,0
chrIV	477499	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.01;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1634,174,0
chrIV	477584	.	A	T	1506	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.247;QD=17.11;ReadPosRankSum=1.691;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1539,171,0
chrIV	477880	.	A	G	1044	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.08;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1077,117,0
chrIV	478092	.	G	C	1628	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.05;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1661,180,0
chrIV	478681	.	T	C	2931	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9188;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.90;SB=-1.458e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2964,321,0
chrIV	479061	.	A	G	3172	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=138;Dels=0.00;FS=7.573;HaplotypeScore=6.7605;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;MQRankSum=-2.378;QD=22.99;ReadPosRankSum=2.414;SB=-1.534e+03	GT:AD:DP:GQ:PL	1/1:2,136:138:99:3205,348,0
chrIV	479358	.	T	C	1979	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.24;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2012,219,0
chrIV	479583	.	A	G	1800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=3.846;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.472;QD=22.22;ReadPosRankSum=1.689;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1833,204,0
chrIV	479664	.	T	G	1650	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=1.513;QD=20.62;ReadPosRankSum=1.601;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1683,186,0
chrIV	480076	.	G	C	1976	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.71;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2009,216,0
chrIV	480095	.	T	A	1899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=0.428;QD=22.34;ReadPosRankSum=1.569;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1932,204,0
chrIV	480113	.	G	T	1761	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.48;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1794,192,0
chrIV	480378	.	T	C	1133	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.43;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1166,129,0
chrIV	480386	.	A	G	1042	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=16.54;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1075,117,0
chrIV	480624	.	G	A	1934	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.45;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1967,201,0
chrIV	480797	.	T	C	1149	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=2.941;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.855;QD=21.28;ReadPosRankSum=2.359;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1182,132,0
chrIV	482012	.	C	G	871	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.74;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:904,99,0
chrIV	487178	.	T	C	2479	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2814;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.07;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2512,273,0
chrIV	487279	.	A	G	1860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=3.384;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.428;QD=21.63;ReadPosRankSum=1.691;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1893,207,0
chrIV	489736	.	T	C	782	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:90:815,90,0
chrIV	491790	.	G	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.29;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1229,132,0
chrIV	491804	.	T	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.66;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1614,171,0
chrIV	495197	.	C	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.57;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1720,180,0
chrIV	496941	.	G	A	1566	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.09;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1599,174,0
chrIV	497463	.	T	A	1772	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.85;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1805,189,0
chrIV	497525	.	C	T	2113	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.22;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2146,228,0
chrIV	498016	.	T	C	1109	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.55;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1142,123,0
chrIV	498138	.	A	G	1576	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.01;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1609,171,0
chrIV	498305	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.89;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1215,129,0
chrIV	498490	.	G	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.06;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1598,168,0
chrIV	498744	.	C	T	1780	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.71;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1813,189,0
chrIV	498945	.	G	A	1745	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.53;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1778,189,0
chrIV	499110	.	G	T	1903	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.38;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1936,204,0
chrIV	499207	.	C	T	2045	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.72;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2078,216,0
chrIV	499324	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.05;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2106,228,0
chrIV	499648	.	C	A	1760	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.71;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1793,189,0
chrIV	499794	.	G	A	1240	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5379;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.32;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1273,138,0
chrIV	500512	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.25;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2013,207,0
chrIV	500594	.	A	G	2059	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.2556;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.80;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2092,225,0
chrIV	501007	.	T	C	2464	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.25;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2497,270,0
chrIV	501591	.	T	G	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=4.960;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.585;QD=21.15;ReadPosRankSum=1.659;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:1048,114,0
chrIV	501621	.	A	G	1243	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.07;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1276,138,0
chrIV	501667	.	A	C	1094	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.54;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1127,123,0
chrIV	502478	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1215,132,0
chrIV	502726	.	G	A	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.390;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.4155;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.390;QD=19.26;ReadPosRankSum=0.364;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1612,171,0
chrIV	502968	.	A	G	2342	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.66;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2375,261,0
chrIV	503249	.	C	A	2981	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.04;SB=-1.652e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:3014,318,0
chrIV	503375	.	T	C	686	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=33.5580;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=15.24;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:719,78,0
chrIV	503412	.	T	C	868	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=12.06;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:901,99,0
chrIV	503619	.	G	A	2298	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.94;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2331,240,0
chrIV	503764	.	A	G	976	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.77;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1009,108,0
chrIV	504498	.	C	T	3357.01	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=24.68;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3357,354,0
chrIV	504527	.	C	T	2829	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=24.39;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2862,300,0
chrIV	504812	.	C	T	2298	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0426;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.89;SB=-1.495e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2331,246,0
chrIV	504824	.	C	T	2197	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.92;SB=-1.427e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2230,237,0
chrIV	505041	.	C	A	938	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=22.33;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:99:971,102,0
chrIV	505053	.	G	A	768	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.94;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:84:801,84,0
chrIV	505055	.	T	C	754	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=21.54;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:84:787,84,0
chrIV	505134	.	G	C	515	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.61;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:60:548,60,0
chrIV	505173	.	A	T	750	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7097;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.037;QD=15.62;ReadPosRankSum=1.659;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,47:48:78:783,78,0
chrIV	505262	.	T	A	536	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=19.85;SB=-6.527e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:60:569,60,0
chrIV	505264	.	T	G	584	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;MQRankSum=-1.494;QD=20.14;ReadPosRankSum=1.614;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:1,28:29:69:617,69,0
chrIV	505278	.	T	C	818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;MQRankSum=-0.821;QD=21.53;ReadPosRankSum=1.641;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:1,37:38:96:851,96,0
chrIV	505398	.	G	T	825	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=26.61;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:90:858,90,0
chrIV	505504	.	T	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=24.04;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1163,129,0
chrIV	505555	.	A	T	1542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;MQRankSum=0.440;QD=26.14;ReadPosRankSum=0.558;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1575,162,0
chrIV	505577	.	A	C	1656	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=25.09;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1689,180,0
chrIV	505599	.	A	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=24.18;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1677,174,0
chrIV	505778	.	A	G	1041	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=19.64;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1074,117,0
chrIV	505795	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=20.10;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1199,123,0
chrIV	505808	.	A	G	926	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=16.84;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:959,105,0
chrIV	505821	.	T	A	849	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=15.16;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:93:882,93,0
chrIV	505841	.	G	A	887	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=14.54;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:96:920,96,0
chrIV	505883	.	T	C	795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.548;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=-1.428;QD=13.95;ReadPosRankSum=1.672;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:90:828,90,0
chrIV	506042	.	T	G	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.442;QD=20.17;ReadPosRankSum=2.381;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1465,156,0
chrIV	506318	.	A	T	965	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.844;QD=24.74;ReadPosRankSum=1.644;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:99:998,105,0
chrIV	507111	.	A	G	1205	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.52;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1238,138,0
chrIV	507132	.	G	A	1022	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.74;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1055,111,0
chrIV	507490	.	G	A	596	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.62;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:72:629,72,0
chrIV	507720	.	A	G	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.984;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.465;QD=17.93;ReadPosRankSum=3.839;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:6,55:61:99:1127,123,0
chrIV	508671	.	A	G	2109	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.52;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2142,231,0
chrIV	509100	.	T	C	2355	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.86;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2388,264,0
chrIV	509186	.	A	T	2806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.088;QD=21.42;ReadPosRankSum=1.705;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:1,129:131:99:2839,294,0
chrIV	509407	.	G	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.51;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1856,195,0
chrIV	509469	.	T	C	2134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=101;Dels=0.00;FS=6.620;HaplotypeScore=5.2841;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.093;QD=21.13;ReadPosRankSum=2.400;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:2,96:101:99:2167,237,0
chrIV	509488	.	G	A	2271	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.42;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2304,246,0
chrIV	509730	.	A	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.63;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1685,186,0
chrIV	509831	.	T	C	1898	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.86;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1931,207,0
chrIV	509963	.	T	G	919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.892;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.591;QD=18.76;ReadPosRankSum=1.591;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:952,105,0
chrIV	511129	.	C	T	1363	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.93;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1396,150,0
chrIV	512393	.	G	A	1788	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.92;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1821,201,0
chrIV	512553	.	T	A	2352	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.19;SB=-1.411e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2385,249,0
chrIV	512762	.	A	G	1296	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.06;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1329,144,0
chrIV	512816	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.39;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1600,168,0
chrIV	513301	.	T	G	1424	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=19.51;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1457,162,0
chrIV	513315	.	T	G	980	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=17.82;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1013,108,0
chrIV	513326	.	A	G	631	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=2.965;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;MQRankSum=-2.057;QD=14.34;ReadPosRankSum=2.282;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:2,42:44:75:664,75,0
chrIV	513329	.	T	C	621	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.20;MQ0=0;QD=16.34;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:654,72,0
chrIV	513332	.	G	A	485	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=14.26;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:54:518,54,0
chrIV	513333	.	G	A	470	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;QD=15.16;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:54:503,54,0
chrIV	513353	.	G	A	263	SnpCluster	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.11;MQ0=0;QD=12.52;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:30:296,30,0
chrIV	513357	.	G	A	253	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=0;QD=11.50;SB=-3.002e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:30:286,30,0
chrIV	513362	.	G	A	224.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;QD=9.33;SB=-5.902e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:27:257,27,0
chrIV	513369	.	C	T	200.03	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.49;MQ0=0;MQRankSum=0.908;QD=9.53;ReadPosRankSum=-0.743;SB=-5.604e+01	GT:AD:DP:GQ:PL	1/1:1,20:21:24:233,24,0
chrIV	513372	.	T	A	173.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=0;QD=8.24;SB=-3.007e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:21:206,21,0
chrIV	513392	.	T	C	45.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=1;QD=3.54;SB=-2.591e+01	GT:AD:DP:GQ:PL	1/1:1,12:13:9:78,9,0
chrIV	513394	.	T	C	50.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=1;QD=3.92;SB=-2.491e+01	GT:AD:DP:GQ:PL	1/1:1,12:13:9:83,9,0
chrIV	513397	.	C	T	52.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=1;QD=3.31;SB=-3.295e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:9:85,9,0
chrIV	513586	.	T	C	4380.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.5327;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;MQRankSum=1.356;QD=23.80;ReadPosRankSum=1.694;SB=-2.119e+03	GT:AD:DP:GQ:PL	1/1:1,183:184:99:4380,477,0
chrIV	519856	.	A	G	1212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=11.3480;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;MQRankSum=0.622;QD=14.96;ReadPosRankSum=1.688;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1245,138,0
chrIV	520227	.	T	A	781	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;QD=15.31;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:814,87,0
chrIV	520242	.	A	G	310	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=5.740;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;MQRankSum=-1.502;QD=10.33;ReadPosRankSum=1.502;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:39:343,39,0
chrIV	520243	.	C	T	294	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=10.50;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:36:327,36,0
chrIV	520249	.	T	A	295	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.99;MQ0=0;QD=10.54;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:36:328,36,0
chrIV	520264	.	A	C	466	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=14.12;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:54:499,54,0
chrIV	520267	.	G	C	442	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;QD=13.00;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:51:475,51,0
chrIV	520273	.	T	A	455	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=4.873;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.87;MQ0=0;MQRankSum=-1.733;QD=10.58;ReadPosRankSum=1.652;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:51:488,51,0
chrIV	520283	.	T	C	650	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.54;MQ0=0;QD=13.27;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:72:683,72,0
chrIV	520286	.	A	T	635	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.36;MQ0=0;QD=11.34;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:75:668,75,0
chrIV	520315	.	G	A	1402	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=1;QD=14.76;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1435,153,0
chrIV	520334	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.705;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=1;MQRankSum=-1.581;QD=15.02;ReadPosRankSum=1.702;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,115:116:99:1775,189,0
chrIV	520389	.	C	T	3122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=1;MQRankSum=1.681;QD=22.79;ReadPosRankSum=1.707;SB=-1.661e+03	GT:AD:DP:GQ:PL	1/1:2,135:137:99:3155,330,0
chrIV	520491	.	C	T	2692	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.82;SB=-1.493e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2725,288,0
chrIV	520595	.	A	G	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=4.297;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=2;MQRankSum=-0.311;QD=22.51;ReadPosRankSum=1.643;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1856,201,0
chrIV	520657	.	G	A	133.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DP=124;Dels=0.00;FS=2.841;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=43.35;MQ0=1;MQRankSum=-3.124;QD=1.07;ReadPosRankSum=-2.672;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:85,34:124:99:163,0,1577
chrIV	520815	.	A	G	2368	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.33;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2401,261,0
chrIV	520844	.	C	G	2010	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.51;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2043,228,0
chrIV	521302	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=16.375;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.353;QD=24.95;ReadPosRankSum=2.372;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1605,174,0
chrIV	521794	.	T	C	2461	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2494,270,0
chrIV	524808	.	T	C	1653	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.45;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1686,177,0
chrIV	524917	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.08;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1254,138,0
chrIV	525250	.	G	T	485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=36;Dels=0.03;FS=3.399;HaplotypeScore=9.0706;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.337;QD=13.47;ReadPosRankSum=0.545;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:54:518,54,0
chrIV	525412	.	G	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.02;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1483,153,0
chrIV	525682	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3005;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.45;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1278,138,0
chrIV	527319	.	C	G	3422.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=22.51;SB=-1.794e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3422,381,0
chrIV	527586	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.345;DP=76;Dels=0.00;FS=27.767;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=3;MQRankSum=1.515;QD=20.17;ReadPosRankSum=0.570;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:4,72:76:99:1566,125,0
chrIV	537889	.	C	T	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=9;QD=0.99;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:9,13:22:6:53,6,0
chrIV	537892	.	T	C	23.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=10;QD=0.99;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:10,14:24:6:55,6,0
chrIV	537897	.	T	C	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.82;MQ0=8;QD=1.23;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:8,13:21:6:57,6,0
chrIV	537913	.	A	T	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=8;QD=1.21;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:8,10:18:6:53,6,0
chrIV	537934	.	T	C	29.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=8;QD=1.35;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:8,14:22:6:61,6,0
chrIV	537961	.	A	G	134.13	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=8;QD=4.97;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:8,19:27:18:167,18,0
chrIV	537970	.	T	C	103.26	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=9;QD=3.56;SB=-2.728e-01	GT:AD:DP:GQ:PL	1/1:9,20:29:15:136,15,0
chrIV	537976	.	C	T	84.51	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=6;QD=3.25;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:5,20:26:12:117,12,0
chrIV	537994	.	A	G	76.51	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=8;QD=2.55;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:8,22:30:12:109,12,0
chrIV	538009	.	C	T	147.13	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=9;QD=4.20;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:9,26:35:18:180,18,0
chrIV	538030	.	C	G	126.13	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=10;QD=3.50;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:10,26:36:18:159,18,0
chrIV	538039	.	T	G	78.51	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.26;MQ0=12;QD=1.96;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:12,28:40:12:111,12,0
chrIV	538042	.	G	A	49.97	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=12;QD=1.28;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:12,27:39:9:82,9,0
chrIV	538051	.	C	T	76.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=14;QD=1.78;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:14,29:43:12:109,12,0
chrIV	538054	.	A	G	110.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=14;QD=2.51;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:14,30:44:15:143,15,0
chrIV	538057	.	T	C	106.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=15;MQRankSum=-0.839;QD=2.31;ReadPosRankSum=1.621;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:16,30:46:15:139,15,0
chrIV	538066	.	C	T	192.03	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.16;MQ0=15;QD=3.92;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:15,34:49:24:225,24,0
chrIV	538069	.	A	G	211.01	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.79;MQ0=17;QD=4.06;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:17,35:52:27:244,27,0
chrIV	538082	.	T	C	177.03	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=12;QD=3.69;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:12,36:48:24:210,24,0
chrIV	538120	.	G	T	549	filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.23;MQ0=12;QD=8.32;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:12,54:66:60:582,60,0
chrIV	538141	.	T	A	715	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=7;QD=11.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:7,58:65:78:748,78,0
chrIV	538156	.	A	G	545	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=6;QD=11.35;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:6,42:48:66:578,66,0
chrIV	538159	.	G	A	545	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=6;QD=11.35;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:6,42:48:63:578,63,0
chrIV	538162	.	C	A	486	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=5;QD=10.34;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:3,44:47:57:519,57,0
chrIV	538163	.	G	C	476	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=10.58;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:57:509,57,0
chrIV	538165	.	G	C	458	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=10.18;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:54:491,54,0
chrIV	538167	.	T	C	519	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=11.53;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:63:552,63,0
chrIV	538168	.	A	G	515	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=11.44;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:63:548,63,0
chrIV	538174	.	A	G	617	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=3;QD=8.34;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:3,71:74:72:650,72,0
chrIV	538183	.	G	A	666	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=2;QD=9.00;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:2,72:74:75:699,75,0
chrIV	538221	.	T	C	748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;MQRankSum=-1.121;QD=11.51;ReadPosRankSum=2.374;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:87:781,87,0
chrIV	538355	.	G	C	1744	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=22.08;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1777,192,0
chrIV	540228	.	C	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.97;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1481,153,0
chrIV	541135	.	A	G	1114	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1147,123,0
chrIV	541221	.	A	T	2509	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=4.393;HaplotypeScore=10.3210;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.697;QD=25.34;ReadPosRankSum=1.627;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2542,261,0
chrIV	541267	.	G	A	2840	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.87;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2873,300,0
chrIV	541275	.	C	T	2791	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.45;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2824,300,0
chrIV	541555	.	T	G	1498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=6.284;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.958;QD=17.62;ReadPosRankSum=1.691;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1531,165,0
chrIV	541985	.	T	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.06;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1128,117,0
chrIV	542589	.	T	A	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.026;DP=94;Dels=0.00;FS=6.163;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.225;QD=14.11;ReadPosRankSum=2.211;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1359,144,0
chrIV	543223	.	A	G	1428	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.31;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1461,159,0
chrIV	545047	.	G	A	2656	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.15;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2689,276,0
chrIV	545374	.	C	T	2105	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2138,231,0
chrIV	546579	.	T	A	854	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=9.7792;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=15.25;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:887,96,0
chrIV	547792	.	T	C	2259	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2292,252,0
chrIV	551387	.	C	A	1878	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.77;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1911,210,0
chrIV	551436	.	T	C	1990	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.14;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2023,222,0
chrIV	551764	.	A	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=16.89;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1215,132,0
chrIV	551843	.	G	T	563	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=12.1736;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=10.05;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:66:596,66,0
chrIV	552477	.	T	G	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;DP=40;Dels=0.00;FS=48.424;HaplotypeScore=6.5452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.919;QD=0.78;ReadPosRankSum=-2.198;SB=-5.149e-03	GT:AD:DP:GQ:PL	0/1:29,11:40:61:61,0,368
chrIV	553110	.	T	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.39;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1824,204,0
chrIV	553651	.	G	A	597	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.56;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:69:630,69,0
chrIV	553753	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.33;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1192,129,0
chrIV	554971	.	A	T	2379	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=26.14;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2412,258,0
chrIV	555051	.	C	G	1798	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.7025;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.05;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1831,201,0
chrIV	555160	.	C	G	2003	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.9601;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.65;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2036,228,0
chrIV	555349	.	A	G	1383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;DP=63;Dels=0.00;FS=25.383;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.674;QD=21.95;ReadPosRankSum=3.598;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:5,58:63:99:1416,156,0
chrIV	555588	.	C	T	583	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.15;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:66:616,66,0
chrIV	555957	.	G	A	818	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.37;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:90:851,90,0
chrIV	556934	.	A	C	1593	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.96;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1626,180,0
chrIV	557242	.	T	C	1911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=20.77;ReadPosRankSum=1.694;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1944,210,0
chrIV	559461	.	A	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.17;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1678,177,0
chrIV	560182	.	T	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.61;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1567,168,0
chrIV	560449	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=19.97;ReadPosRankSum=1.501;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1551,165,0
chrIV	562103	.	T	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1330;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.64;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1251,129,0
chrIV	562387	.	A	G	1352	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.48;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1385,153,0
chrIV	563209	.	G	C	921	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.93;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:954,102,0
chrIV	563218	.	G	T	918	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.39;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:951,99,0
chrIV	563382	.	T	C	1009	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.40;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1042,114,0
chrIV	565063	.	T	A	1504	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1537,171,0
chrIV	565313	.	C	T	1523	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=15.54;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1556,168,0
chrIV	565322	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3337;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=15.90;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1464,159,0
chrIV	565512	.	T	C	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.324;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.967;QD=19.82;ReadPosRankSum=1.652;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1757,198,0
chrIV	565653	.	G	T	2181	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.47;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2214,240,0
chrIV	566483	.	T	C	1739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.327;QD=22.58;ReadPosRankSum=1.642;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1772,192,0
chrIV	566637	.	A	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.63;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1391,153,0
chrIV	567144	.	T	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.48;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1687,183,0
chrIV	568131	.	A	T	1393	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.43;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1426,150,0
chrIV	568569	.	A	G	1515	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.75;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1548,168,0
chrIV	568816	.	G	A	2835	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.0172;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.43;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2868,297,0
chrIV	568863	.	G	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.80;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1842,201,0
chrIV	568871	.	G	A	1773	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=24.62;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1806,189,0
chrIV	569059	.	A	G	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.211;QD=18.81;ReadPosRankSum=2.255;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1500,162,0
chrIV	569301	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=4.130;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=0.787;QD=25.82;ReadPosRankSum=1.654;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1169,123,0
chrIV	569606	.	T	A	677	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.74;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:710,75,0
chrIV	570168	.	T	C	1619	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.498;QD=21.88;ReadPosRankSum=1.639;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1652,180,0
chrIV	570236	.	C	G	2202	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=6.6933;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.02;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2235,246,0
chrIV	570290	.	A	T	2317	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.65;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2350,243,0
chrIV	570353	.	C	G	1225	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.28;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:67:99:1258,138,0
chrIV	570369	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=16.60;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:913,99,0
chrIV	570631	.	G	A	2510	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.13;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2543,264,0
chrIV	570806	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.595;QD=22.37;ReadPosRankSum=1.577;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1554,165,0
chrIV	570926	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.56;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1887,201,0
chrIV	571144	.	C	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.64;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1702,180,0
chrIV	571473	.	C	T	863	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.07;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:896,93,0
chrIV	571718	.	A	G	2108	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.8508;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.694;QD=22.91;ReadPosRankSum=0.666;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:1,90:92:99:2141,231,0
chrIV	571806	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.56;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1494,168,0
chrIV	572492	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.65;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1520,162,0
chrIV	572610	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.48;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1719,183,0
chrIV	572797	.	G	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=24.02;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1090,114,0
chrIV	572826	.	C	T	762	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.05;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:795,84,0
chrIV	572850	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.13;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1195,123,0
chrIV	573174	.	A	G	1383	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.61;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1416,153,0
chrIV	573585	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.96;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1630,177,0
chrIV	573613	.	G	A	1843	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.48;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1876,195,0
chrIV	573672	.	G	A	2144	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.81;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2177,228,0
chrIV	573928	.	A	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.34;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1284,141,0
chrIV	574093	.	G	A	3184	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.68;SB=-1.653e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3217,348,0
chrIV	574445	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.96;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1961,207,0
chrIV	574619	.	C	T	2120	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8030;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.37;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2153,231,0
chrIV	574753	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.66;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1311,144,0
chrIV	574804	.	G	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.53;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1223,132,0
chrIV	574934	.	G	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7616;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.96;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1940,207,0
chrIV	574968	.	G	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.27;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1632,180,0
chrIV	574989	.	A	G	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=2.598;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.502;QD=20.29;ReadPosRankSum=2.323;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1616,177,0
chrIV	575468	.	A	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.01;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1454,162,0
chrIV	575591	.	G	A	1994	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.02;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2027,210,0
chrIV	575774	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.11;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1720,189,0
chrIV	575948	.	G	A	1238	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.51;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1271,129,0
chrIV	576258	.	C	T	1757	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.92;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1790,192,0
chrIV	576373	.	A	G	3331.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.560;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=7.3859;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.536;QD=23.29;ReadPosRankSum=1.708;SB=-1.797e+03	GT:AD:DP:GQ:PL	1/1:1,140:143:99:3331,357,0
chrIV	576434	.	A	G	2220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.680;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=0.031;QD=19.82;ReadPosRankSum=1.670;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2253,246,0
chrIV	576472	.	T	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=0;QD=15.55;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1230,129,0
chrIV	576497	.	C	A	834	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=12.83;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:90:867,90,0
chrIV	576503	.	G	T	872	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=13.62;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:96:905,96,0
chrIV	576577	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7812;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.82;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1844,192,0
chrIV	576635	.	C	T	1762	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=16.47;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1795,207,0
chrIV	576707	.	C	T	2520	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=23.12;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2553,270,0
chrIV	576713	.	C	T	2636	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=23.96;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2669,276,0
chrIV	576905	.	A	G	1827	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.1848;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.23;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,90:95:99:1860,204,0
chrIV	577178	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=4.907;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.933;QD=19.17;ReadPosRankSum=1.679;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1279,138,0
chrIV	577742	.	T	G	2182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=3.811;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-1.115;QD=21.60;ReadPosRankSum=0.875;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2215,243,0
chrIV	577940	.	G	A	2075	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.80;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2108,222,0
chrIV	578168	.	T	C	1235	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1268,138,0
chrIV	578379	.	A	G	2126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=6.5814;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=1.285;QD=22.38;ReadPosRankSum=1.695;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:1,92:94:99:2159,237,0
chrIV	578524	.	G	C	858	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.26;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:891,99,0
chrIV	578566	.	T	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.29;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1453,153,0
chrIV	578638	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.01;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1920,207,0
chrIV	578649	.	T	C	1645	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.85;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1678,183,0
chrIV	578728	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=17.24;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1309,141,0
chrIV	578737	.	C	T	1377	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=18.12;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1410,150,0
chrIV	578841	.	G	A	2267	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.12;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2300,240,0
chrIV	579755	.	A	G	1187	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-0.517;QD=20.82;ReadPosRankSum=1.611;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1220,135,0
chrIV	579762	.	A	C	1175	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.26;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1208,129,0
chrIV	579764	.	G	A	1252	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=21.59;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1285,135,0
chrIV	579813	.	A	G	1150	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.49;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1183,126,0
chrIV	579869	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.23;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1625,171,0
chrIV	579879	.	A	G	1635	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.70;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1668,186,0
chrIV	579940	.	G	A	1497	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.96;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1530,159,0
chrIV	580006	.	T	C	1702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.701;DP=93;Dels=0.00;FS=5.812;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-1.745;QD=18.30;ReadPosRankSum=2.923;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:3,88:93:99:1735,189,0
chrIV	580011	.	T	C	1816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.759;QD=20.40;ReadPosRankSum=1.693;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1849,201,0
chrIV	580119	.	G	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.69;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1356,147,0
chrIV	580191	.	T	C	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=3.078;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.240;QD=21.14;ReadPosRankSum=1.679;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1428,156,0
chrIV	580230	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0643;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.89;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1653,183,0
chrIV	580374	.	C	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.97;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1291,138,0
chrIV	580820	.	T	A	2114	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.30;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2147,222,0
chrIV	580899	.	T	C	2071	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.695;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=6.9324;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.585;QD=22.03;ReadPosRankSum=1.658;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2104,231,0
chrIV	580972	.	A	G	1510	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.02;FS=3.979;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.559;QD=24.75;ReadPosRankSum=1.675;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1543,162,0
chrIV	581004	.	A	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.75;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1387,150,0
chrIV	581091	.	C	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.69;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1626,168,0
chrIV	581181	.	T	C	2531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.524;QD=23.01;ReadPosRankSum=1.700;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:1,108:110:99:2564,282,0
chrIV	581388	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.49;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1630,180,0
chrIV	581521	.	G	A	2208	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.64;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2241,234,0
chrIV	581766	.	G	A	2195	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.12;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2228,237,0
chrIV	581857	.	A	G	1914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.750;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.647;QD=23.06;ReadPosRankSum=1.690;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1947,216,0
chrIV	581897	.	A	C	1630	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.9834;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.63;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1663,189,0
chrIV	582132	.	G	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.12;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1482,156,0
chrIV	582144	.	G	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.38;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1480,153,0
chrIV	582217	.	G	A	1391	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.59;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1424,147,0
chrIV	582238	.	A	T	1316	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.23;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1349,141,0
chrIV	582466	.	T	G	1511	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.55;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1544,165,0
chrIV	582525	.	T	A	905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=4.856;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=-1.066;QD=17.40;ReadPosRankSum=1.666;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:938,99,0
chrIV	582555	.	A	G	851	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=50;Dels=0.00;FS=6.114;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.077;QD=17.02;ReadPosRankSum=2.348;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:2,46:50:99:884,99,0
chrIV	582571	.	T	C	1035	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.17;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1068,117,0
chrIV	582739	.	A	G	1316	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.56;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1349,150,0
chrIV	583013	.	A	G	1191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=4.856;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.333;QD=22.90;ReadPosRankSum=1.666;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1224,135,0
chrIV	583094	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.08;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1203,132,0
chrIV	583433	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.42;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1404,156,0
chrIV	583733	.	A	G	1485	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.07;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1518,162,0
chrIV	583765	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=18.72;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1250,129,0
chrIV	583767	.	A	G	1111	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;MQRankSum=1.253;QD=16.83;ReadPosRankSum=1.519;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1144,126,0
chrIV	583846	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=17.25;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:982,105,0
chrIV	583925	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.67;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1138,120,0
chrIV	583943	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.30;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1059,114,0
chrIV	583958	.	T	C	934	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.76;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:967,105,0
chrIV	584012	.	T	C	1207	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.81;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1240,138,0
chrIV	584489	.	A	T	2021	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=3.100;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=0.566;QD=20.41;ReadPosRankSum=1.661;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2054,219,0
chrIV	584515	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.80;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1657,171,0
chrIV	584534	.	G	A	1589	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.38;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1622,171,0
chrIV	584913	.	G	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.2763;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.53;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1497,162,0
chrIV	585389	.	T	C	1077	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.94;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1110,120,0
chrIV	585554	.	A	G	1066	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.90;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1099,117,0
chrIV	585820	.	A	G	1828	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1861,198,0
chrIV	586305	.	G	C	1517	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.50;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1550,168,0
chrIV	586700	.	A	G	2519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=123;Dels=0.00;FS=4.236;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.256;QD=20.48;ReadPosRankSum=1.704;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:1,121:123:99:2552,285,0
chrIV	586725	.	A	G	2522	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=5.278;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=0.851;QD=21.02;ReadPosRankSum=1.673;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,117:120:99:2555,276,0
chrIV	586742	.	C	G	2423	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.07;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2456,258,0
chrIV	586820	.	T	C	2034	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.14;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2067,225,0
chrIV	586838	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.50;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2139,234,0
chrIV	587033	.	A	G	3051	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=18.0772;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.19;SB=-1.570e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3084,345,0
chrIV	587113	.	C	T	3186	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.78;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:3219,342,0
chrIV	587347	.	C	T	2266	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2299,255,0
chrIV	588140	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.61;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1447,153,0
chrIV	588263	.	T	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.15;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1986,216,0
chrIV	588381	.	A	T	1974	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.17;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2007,207,0
chrIV	588386	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;MQRankSum=-0.747;QD=16.60;ReadPosRankSum=1.664;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,101:103:99:1743,192,0
chrIV	588509	.	A	G	1220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.152;QD=21.40;ReadPosRankSum=1.672;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1253,135,0
chrIV	588583	.	G	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.76;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1041,114,0
chrIV	588705	.	G	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.15;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1598,168,0
chrIV	589025	.	G	A	1349	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.67;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1382,144,0
chrIV	589061	.	G	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=25.11;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2017,207,0
chrIV	589136	.	G	A	1643	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.54;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1676,177,0
chrIV	589440	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.42;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1318,141,0
chrIV	589449	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=23.93;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1445,150,0
chrIV	589460	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.83;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1408,150,0
chrIV	589510	.	A	T	885	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.59;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:918,96,0
chrIV	589613	.	C	T	712	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=7.4044;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=15.15;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:81:745,81,0
chrIV	589643	.	T	G	729	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=42.3780;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=11.95;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:84:762,84,0
chrIV	589702	.	C	G	983	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.66;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1016,114,0
chrIV	589875	.	C	T	1228	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.62;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1261,132,0
chrIV	590018	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.55;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1273,141,0
chrIV	590019	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=23.29;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1337,147,0
chrIV	590058	.	A	G	1489	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.63;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1522,165,0
chrIV	590081	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.30;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1304,141,0
chrIV	590328	.	A	G	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.189;QD=18.35;ReadPosRankSum=1.664;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:969,108,0
chrIV	590403	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.69;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1258,135,0
chrIV	590503	.	G	T	594	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.47;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:627,66,0
chrIV	590540	.	T	C	956	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.92;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:989,108,0
chrIV	590603	.	G	T	1523	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.78;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1556,168,0
chrIV	590751	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.71;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1027,108,0
chrIV	590870	.	A	G	1127	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.00;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1160,123,0
chrIV	590898	.	T	C	878	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:911,99,0
chrIV	591021	.	A	G	2421	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.50;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2454,270,0
chrIV	591129	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.82;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1367,150,0
chrIV	591187	.	A	G	1209	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.39;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1242,135,0
chrIV	591205	.	C	T	1021	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.42;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1054,111,0
chrIV	591603	.	T	G	762	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.77;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:87:795,87,0
chrIV	591737	.	T	C	855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3506;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=0.165;QD=20.36;ReadPosRankSum=1.568;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:888,99,0
chrIV	592009	.	G	A	1615	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=27.37;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1648,171,0
chrIV	592050	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=4.017;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.135;QD=21.79;ReadPosRankSum=0.060;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1297,121,0
chrIV	592072	.	T	C	1117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.752;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.425;QD=21.08;ReadPosRankSum=-1.405;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1150,104,0
chrIV	592124	.	G	A	1614	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.11;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1647,174,0
chrIV	592160	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=23.35;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1784,186,0
chrIV	592179	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=20.51;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1407,153,0
chrIV	592224	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=16.58;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:945,105,0
chrIV	592316	.	G	A	2275	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.28;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2308,237,0
chrIV	592553	.	G	A	518.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.553;DP=102;Dels=0.00;FS=7.985;HaplotypeScore=163.0378;MLEAC=1;MLEAF=0.500;MQ=42.35;MQ0=0;MQRankSum=-3.357;QD=5.08;ReadPosRankSum=-0.252;SB=-3.660e+02	GT:AD:DP:GQ:PL	0/1:59,41:102:99:548,0,507
chrIV	592563	.	C	A	1196	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=11.7361;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=12.46;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1229,129,0
chrIV	592575	.	C	A	76.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.701;DP=103;Dels=0.00;FS=0.851;HaplotypeScore=9.6969;MLEAC=1;MLEAF=0.500;MQ=45.87;MQ0=0;MQRankSum=-4.330;QD=0.74;ReadPosRankSum=-3.318;SB=-2.070e+02	GT:AD:DP:GQ:PL	0/1:76,27:103:99:106,0,1055
chrIV	593135	.	T	C	1472	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.44;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1505,168,0
chrIV	593192	.	T	C	1117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.945;QD=16.67;ReadPosRankSum=1.680;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1150,126,0
chrIV	593211	.	A	C	1215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.280;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.2279;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.427;QD=17.61;ReadPosRankSum=0.778;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1248,116,0
chrIV	593254	.	T	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=65.0752;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=19.19;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1683,177,0
chrIV	593313	.	G	A	1064	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=16.62;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1097,114,0
chrIV	593316	.	A	G	1080	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=17.14;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1113,120,0
chrIV	593463	.	A	G	1065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=2.990;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.020;QD=16.90;ReadPosRankSum=2.333;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1098,126,0
chrIV	593517	.	T	G	1234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.191;QD=19.28;ReadPosRankSum=1.678;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1267,135,0
chrIV	593642	.	T	C	1061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=73;Dels=0.00;FS=3.949;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=1.059;QD=14.53;ReadPosRankSum=1.684;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1094,120,0
chrIV	593760	.	C	T	1528	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.65;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1561,168,0
chrIV	593816	.	T	A	1345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.520;QD=21.35;ReadPosRankSum=1.675;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1378,144,0
chrIV	594035	.	T	A	800	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:833,93,0
chrIV	594150	.	A	G	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.266;QD=21.14;ReadPosRankSum=1.688;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1682,180,0
chrIV	594402	.	A	G	1585	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.01;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1618,177,0
chrIV	594517	.	T	C	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.595;QD=22.06;ReadPosRankSum=1.641;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1732,189,0
chrIV	594612	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.11;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1218,129,0
chrIV	594738	.	A	G	810	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=13.97;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:93:843,93,0
chrIV	594777	.	C	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.52;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1243,138,0
chrIV	594843	.	A	G	1663	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.88;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1696,186,0
chrIV	594975	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.43;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1087,114,0
chrIV	595029	.	A	G	703	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.53;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:736,78,0
chrIV	595047	.	C	T	785	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.62;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:818,87,0
chrIV	595104	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.60;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1166,120,0
chrIV	595122	.	C	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.99;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1381,147,0
chrIV	595155	.	C	T	2088	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.21;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2121,225,0
chrIV	595269	.	C	G	1022	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.58;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1055,114,0
chrIV	595275	.	G	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.79;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1085,111,0
chrIV	595314	.	C	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=16.49;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1072,111,0
chrIV	595362	.	G	C	1150	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.85;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1183,129,0
chrIV	595528	.	A	G	1722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.592;QD=21.52;ReadPosRankSum=1.688;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1755,189,0
chrIV	595537	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-1.267;QD=20.02;ReadPosRankSum=1.690;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1675,183,0
chrIV	595587	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=3.321;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.179;QD=19.53;ReadPosRankSum=1.673;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1185,129,0
chrIV	595611	.	G	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.81;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1406,150,0
chrIV	595713	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.32;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1305,144,0
chrIV	596055	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.074;HaplotypeScore=8.2856;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.080;QD=20.54;ReadPosRankSum=1.682;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1471,159,0
chrIV	596770	.	C	T	2766	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=23.05;SB=-1.641e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2799,291,0
chrIV	596811	.	T	C	2888	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=22.56;SB=-1.548e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2921,318,0
chrIV	596817	.	T	C	2941	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=21.79;SB=-1.535e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2974,324,0
chrIV	596913	.	G	A	1925	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=20.70;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1958,204,0
chrIV	597096	.	C	T	756	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=65.4543;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=0;QD=10.36;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:81:789,81,0
chrIV	597114	.	T	C	1035	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=64.9997;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=12.94;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1068,120,0
chrIV	597218	.	C	T	2107	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.66;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2140,225,0
chrIV	597245	.	G	A	2373	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.77;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2406,249,0
chrIV	597383	.	C	T	1442	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=23.26;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1475,153,0
chrIV	597485	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.56;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1965,207,0
chrIV	597488	.	T	C	1852	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.44;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1885,204,0
chrIV	597668	.	T	C	1675	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.04;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1708,192,0
chrIV	597800	.	T	C	2113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=3.343;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.966;QD=22.24;ReadPosRankSum=1.696;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2146,234,0
chrIV	598134	.	A	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.12;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2157,234,0
chrIV	598184	.	T	G	1557	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.24;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1590,177,0
chrIV	598232	.	C	T	862	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:895,93,0
chrIV	598269	.	A	G	754	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.433;QD=18.85;ReadPosRankSum=0.780;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:87:787,87,0
chrIV	598369	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.283;QD=23.02;ReadPosRankSum=1.669;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1322,141,0
chrIV	598426	.	A	C	796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.666;QD=20.41;ReadPosRankSum=1.555;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:1,38:39:93:829,93,0
chrIV	598569	.	G	A	956	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.51;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:989,102,0
chrIV	598655	.	G	A	394	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.76;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:45:427,45,0
chrIV	598656	.	C	T	389	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.52;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:45:422,45,0
chrIV	598729	.	C	T	872	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.91;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:93:905,93,0
chrIV	598956	.	A	G	1473	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.15;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1506,165,0
chrIV	599013	.	G	A	1386	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.32;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1419,147,0
chrIV	599029	.	G	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.17;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1218,135,0
chrIV	599181	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.90;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1443,153,0
chrIV	599229	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=63;Dels=0.00;FS=9.462;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.436;QD=19.70;ReadPosRankSum=2.889;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:3,60:63:99:1274,138,0
chrIV	599314	.	T	C	1936	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.61;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1969,210,0
chrIV	599388	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.73;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1880,201,0
chrIV	599409	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.010;QD=20.03;ReadPosRankSum=1.684;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,71:75:99:1535,168,0
chrIV	599654	.	G	A	1786	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.61;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1819,189,0
chrIV	599820	.	G	A	1778	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.44;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1811,201,0
chrIV	599864	.	G	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.67;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2045,216,0
chrIV	599964	.	C	G	2270	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.62;SB=-1.410e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2303,252,0
chrIV	600037	.	T	C	1660	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1693,186,0
chrIV	600120	.	T	C	1923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=9.799;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-0.675;QD=18.31;ReadPosRankSum=2.308;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:2,102:105:99:1956,216,0
chrIV	600127	.	T	A	1895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=103;Dels=0.00;FS=14.706;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.775;QD=18.40;ReadPosRankSum=2.932;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:3,100:103:99:1928,201,0
chrIV	600177	.	C	T	2154	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.9046;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.06;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,109:113:99:2187,237,0
chrIV	600339	.	T	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.8916;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=17.65;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1692,183,0
chrIV	600425	.	C	T	2595	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.05;FS=0.000;HaplotypeScore=20.1962;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.27;SB=-1.663e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2628,273,0
chrIV	600479	.	G	A	3040	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=121.9825;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.87;SB=-1.767e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3073,327,0
chrIV	600632	.	A	G	708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.059;QD=19.67;ReadPosRankSum=1.636;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:81:741,81,0
chrIV	600705	.	C	T	2484	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=20.36;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2517,279,0
chrIV	600722	.	T	C	2659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=140;Dels=0.00;FS=3.722;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=-1.583;QD=18.99;ReadPosRankSum=1.707;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:1,138:140:99:2692,288,0
chrIV	600764	.	G	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=92.6070;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=15.54;SB=-1.489e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1789,186,0
chrIV	600792	.	G	T	1300	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=13.68;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1333,141,0
chrIV	600978	.	A	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.28;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1684,174,0
chrIV	601041	.	A	G	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DP=27;Dels=0.00;FS=1.657;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=44.33;MQ0=0;MQRankSum=-2.443;QD=0.45;ReadPosRankSum=2.289;SB=-5.301e+01	GT:AD:DP:GQ:PL	0/1:18,9:27:42:42,0,238
chrIV	601210	.	T	A	1572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.736;QD=19.41;ReadPosRankSum=1.602;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1605,177,0
chrIV	601220	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.94;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1608,171,0
chrIV	601431	.	A	C	1393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=6.322;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=0.583;QD=18.57;ReadPosRankSum=2.350;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1426,159,0
chrIV	601524	.	C	T	2097	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.07;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2130,225,0
chrIV	601668	.	C	T	807	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=16.47;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:93:840,93,0
chrIV	601683	.	C	T	914	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.32;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:947,102,0
chrIV	602153	.	T	C	2840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.335;QD=23.28;ReadPosRankSum=1.704;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2873,318,0
chrIV	602435	.	A	G	3155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.248;QD=22.06;ReadPosRankSum=1.684;SB=-1.787e+03	GT:AD:DP:GQ:PL	1/1:1,142:143:99:3188,354,0
chrIV	602488	.	C	T	2355	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.55;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2388,249,0
chrIV	602876	.	C	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.30;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1519,159,0
chrIV	602884	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=16.96;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1271,132,0
chrIV	603005	.	G	A	2610	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.75;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2643,282,0
chrIV	603115	.	A	C	1993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6166;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.501;QD=23.17;ReadPosRankSum=2.393;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:2026,219,0
chrIV	603439	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.39;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1399,156,0
chrIV	603579	.	T	A	2518	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4604;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.98;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2551,270,0
chrIV	603685	.	T	C	3497.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.45;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,143:143:99:3497,381,0
chrIV	603743	.	A	G	2360	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.45;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2393,267,0
chrIV	603839	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.6001;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.30;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2101,228,0
chrIV	603991	.	C	A	6104.01	PASS	AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=12.2017;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=24.71;SB=-2.769e+03	GT:AD:DP:GQ:PL	1/1:0,245:247:99:6104,628,0
chrIV	604105	.	T	C	2032	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.39;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2065,225,0
chrIV	604262	.	T	C	1307.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.204;DP=186;Dels=0.00;FS=10.288;HaplotypeScore=34.6554;MLEAC=1;MLEAF=0.500;MQ=39.89;MQ0=0;MQRankSum=-3.161;QD=7.03;ReadPosRankSum=4.038;SB=-3.460e+02	GT:AD:DP:GQ:PL	0/1:76,108:186:99:1337,0,216
chrIV	604268	.	C	T	1253.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.650;DP=177;Dels=0.01;FS=10.680;HaplotypeScore=21.0493;MLEAC=1;MLEAF=0.500;MQ=39.19;MQ0=0;MQRankSum=-4.081;QD=7.08;ReadPosRankSum=0.414;SB=-3.270e+02	GT:AD:DP:GQ:PL	0/1:76,100:176:99:1283,0,253
chrIV	604277	.	A	T	915.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;DP=165;Dels=0.00;FS=14.313;HaplotypeScore=19.4156;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=0;MQRankSum=-5.415;QD=5.55;ReadPosRankSum=-5.604;SB=-2.440e+02	GT:AD:DP:GQ:PL	0/1:81,82:165:99:945,0,469
chrIV	604283	.	G	C	669.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.793;DP=161;Dels=0.00;FS=10.404;HaplotypeScore=12.0292;MLEAC=1;MLEAF=0.500;MQ=41.41;MQ0=0;MQRankSum=-7.357;QD=4.16;ReadPosRankSum=-6.086;SB=-2.260e+02	GT:AD:DP:GQ:PL	0/1:85,72:161:99:699,0,558
chrIV	604289	.	C	T	500.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.471;DP=152;Dels=0.00;FS=7.423;HaplotypeScore=9.2266;MLEAC=1;MLEAF=0.500;MQ=42.25;MQ0=0;MQRankSum=-6.723;QD=3.29;ReadPosRankSum=-6.730;SB=-1.540e+02	GT:AD:DP:GQ:PL	0/1:92,60:152:99:530,0,607
chrIV	604292	.	A	T	329.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=149;Dels=0.00;FS=9.354;HaplotypeScore=7.0552;MLEAC=1;MLEAF=0.500;MQ=42.69;MQ0=0;MQRankSum=-6.217;QD=2.21;ReadPosRankSum=-6.885;SB=-1.310e+02	GT:AD:DP:GQ:PL	0/1:96,52:149:99:359,0,708
chrIV	604397	.	A	G	1647	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=18.10;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1680,186,0
chrIV	604439	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.41;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1708,180,0
chrIV	604670	.	T	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.19;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1161,132,0
chrIV	604674	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.44;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1213,126,0
chrIV	604841	.	T	C	1270	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.17;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1303,141,0
chrIV	605187	.	A	G	1837	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.97;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1870,204,0
chrIV	605254	.	A	G	1857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=4.087;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.225;QD=22.37;ReadPosRankSum=1.521;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1890,201,0
chrIV	605312	.	C	T	2022	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.92;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2055,213,0
chrIV	605381	.	T	C	2376	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.84;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2409,270,0
chrIV	605558	.	T	C	1755	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.67;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1788,198,0
chrIV	605615	.	G	C	1761	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.58;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1794,192,0
chrIV	605641	.	C	T	1728	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.35;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1761,183,0
chrIV	605972	.	G	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.84;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1304,138,0
chrIV	605973	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.95;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1311,138,0
chrIV	606896	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.05;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1356,150,0
chrIV	606952	.	T	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.93;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1239,135,0
chrIV	607313	.	G	A	2501	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.8350;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=26.33;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2534,261,0
chrIV	607474	.	C	T	3732.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=10.5087;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.23;SB=-1.865e+03	GT:AD:DP:GQ:PL	1/1:0,152:154:99:3732,391,0
chrIV	607973	.	G	A	797	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.71;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:830,87,0
chrIV	608132	.	A	G	2779	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.38;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2812,312,0
chrIV	608224	.	T	C	2237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.155;QD=24.58;ReadPosRankSum=1.655;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:2270,240,0
chrIV	608333	.	T	C	1173	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=19.55;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1206,129,0
chrIV	608348	.	T	A	1419	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=18.92;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1452,153,0
chrIV	608350	.	T	C	1537	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=18.98;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1570,174,0
chrIV	608354	.	G	A	1523	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.361;DP=85;Dels=0.00;FS=4.058;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-0.660;QD=17.92;ReadPosRankSum=1.155;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1556,149,0
chrIV	608390	.	T	C	2678	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.60;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2711,294,0
chrIV	608456	.	T	G	4105.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.371;DP=197;Dels=0.00;FS=5.240;HaplotypeScore=13.3205;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-2.382;QD=20.84;ReadPosRankSum=3.389;SB=-1.993e+03	GT:AD:DP:GQ:PL	1/1:4,192:197:99:4105,456,0
chrIV	608522	.	T	A	2461	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.69;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2494,270,0
chrIV	608546	.	A	G	1910	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.32;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1943,213,0
chrIV	608616	.	G	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.79;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1970,207,0
chrIV	608768	.	A	G	2542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=123;Dels=0.00;FS=2.586;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.785;QD=20.67;ReadPosRankSum=2.909;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:3,119:123:99:2575,282,0
chrIV	608921	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=12.4146;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.53;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1614,171,0
chrIV	609170	.	C	A	1645	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.91;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:87:99:1678,174,0
chrIV	609172	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=17.06;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,86:90:99:1568,171,0
chrIV	609209	.	A	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.45;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1764,189,0
chrIV	609437	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.55;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1218,132,0
chrIV	609602	.	A	T	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.702;QD=15.97;ReadPosRankSum=1.685;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1279,135,0
chrIV	609926	.	T	C	2123	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.85;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2156,234,0
chrIV	609953	.	T	G	1749	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.07;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1782,195,0
chrIV	610570	.	C	T	2226	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.71;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2259,240,0
chrIV	610717	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.05;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1654,186,0
chrIV	610766	.	A	T	1756	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.11;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1789,189,0
chrIV	610801	.	A	G	1931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=83;Dels=0.00;FS=7.573;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-1.025;QD=23.27;ReadPosRankSum=2.242;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1964,216,0
chrIV	610866	.	C	A	1965	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=21.83;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1998,219,0
chrIV	610896	.	G	A	1814	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.09;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,81:86:99:1847,195,0
chrIV	611056	.	A	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.16;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1214,129,0
chrIV	611092	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.36;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1272,132,0
chrIV	611095	.	A	T	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-0.495;QD=22.48;ReadPosRankSum=1.670;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1292,132,0
chrIV	611178	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-1.545;QD=18.46;ReadPosRankSum=1.685;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1399,153,0
chrIV	611202	.	C	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=14.05;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1115,123,0
chrIV	611205	.	A	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=14.07;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1102,120,0
chrIV	611423	.	T	C	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.924;QD=24.38;ReadPosRankSum=1.675;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1496,168,0
chrIV	611569	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=19.82;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1539,159,0
chrIV	611584	.	A	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=17.60;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1353,147,0
chrIV	611602	.	T	C	1511	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.78;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1544,168,0
chrIV	611634	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=19.31;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1945,207,0
chrIV	611678	.	C	T	2235	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.49;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,99:104:99:2268,240,0
chrIV	611706	.	A	G	2151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.739;DP=93;Dels=0.00;FS=24.855;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.554;QD=23.13;ReadPosRankSum=3.739;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:5,88:93:99:2184,240,0
chrIV	611859	.	G	A	1778	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.79;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1811,186,0
chrIV	611871	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.49;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1559,165,0
chrIV	611969	.	G	C	1882	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.68;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1915,210,0
chrIV	612020	.	A	G	2154	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.54;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2187,243,0
chrIV	612078	.	C	T	2457	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9287;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.18;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2490,258,0
chrIV	612171	.	T	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.02;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1234,138,0
chrIV	612253	.	C	G	911	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.97;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:944,102,0
chrIV	612294	.	C	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.98;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1264,135,0
chrIV	612323	.	G	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.08;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1181,123,0
chrIV	612573	.	G	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.65;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1594,165,0
chrIV	612660	.	G	A	1683	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.14;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1716,180,0
chrIV	612828	.	G	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1773,186,0
chrIV	613325	.	T	C	1910	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.95;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1943,216,0
chrIV	613362	.	T	C	1970	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=23.73;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2003,222,0
chrIV	613386	.	T	G	1891	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=24.56;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1924,213,0
chrIV	613520	.	T	C	1611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.720;QD=24.78;ReadPosRankSum=1.679;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1644,180,0
chrIV	613738	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=17.29;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1485,153,0
chrIV	613744	.	A	G	1375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3337;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=-0.823;QD=17.19;ReadPosRankSum=1.689;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1408,153,0
chrIV	613810	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=74;Dels=0.00;FS=5.958;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.192;QD=19.05;ReadPosRankSum=2.905;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1443,156,0
chrIV	613813	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.60;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,74:78:99:1484,162,0
chrIV	613945	.	T	A	1486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.816;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=0.511;QD=21.23;ReadPosRankSum=1.322;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1519,139,0
chrIV	614005	.	G	C	1018	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=11.0667;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.36;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,47:50:99:1051,117,0
chrIV	614045	.	G	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=23.23;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1450,153,0
chrIV	614064	.	T	C	1467	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=22.57;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1500,162,0
chrIV	614093	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-1.127;QD=20.34;ReadPosRankSum=1.677;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1335,147,0
chrIV	614186	.	G	A	1730	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.66;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1763,183,0
chrIV	614205	.	G	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=18.32;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1517,168,0
chrIV	614223	.	G	T	1517	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=16.31;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1550,171,0
chrIV	614250	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.33;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1741,192,0
chrIV	614280	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.260;QD=20.76;ReadPosRankSum=1.689;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1694,183,0
chrIV	614321	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.93;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1305,135,0
chrIV	614483	.	G	A	1163	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.6789;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.62;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1196,135,0
chrIV	614534	.	T	C	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.379;QD=18.88;ReadPosRankSum=1.678;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1260,138,0
chrIV	614618	.	C	T	1838	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.56;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1871,198,0
chrIV	614675	.	A	G	2004	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.58;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2037,216,0
chrIV	614729	.	A	G	1563	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.12;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1596,177,0
chrIV	614789	.	T	C	947	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.91;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:980,108,0
chrIV	614940	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=82;Dels=0.00;FS=6.012;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.777;QD=16.18;ReadPosRankSum=2.777;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:3,74:82:99:1360,150,0
chrIV	615060	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.74;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1532,168,0
chrIV	615092	.	A	G	720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;MQRankSum=-0.824;QD=11.80;ReadPosRankSum=1.675;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:84:753,84,0
chrIV	615095	.	C	T	689	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=11.48;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:78:722,78,0
chrIV	615114	.	C	T	708	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=13.11;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:78:741,78,0
chrIV	615161	.	T	A	803	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=17.09;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:836,90,0
chrIV	615243	.	A	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.60;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1545,168,0
chrIV	615258	.	T	C	1619	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=3.641;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.077;QD=21.88;ReadPosRankSum=1.685;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1652,177,0
chrIV	615319	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.42;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1654,177,0
chrIV	615413	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.7203;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=18.57;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1073,117,0
chrIV	615437	.	C	T	713	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=15.84;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:81:746,81,0
chrIV	615449	.	A	T	734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=3.074;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;MQRankSum=-1.804;QD=15.96;ReadPosRankSum=2.235;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:81:767,81,0
chrIV	615581	.	C	T	1004	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.49;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1037,105,0
chrIV	615641	.	G	A	1118	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.63;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1151,120,0
chrIV	615694	.	G	T	1114	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.89;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1147,120,0
chrIV	615735	.	C	G	675	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=14.67;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:78:708,78,0
chrIV	615758	.	T	C	711	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=16.53;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:744,81,0
chrIV	615816	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=22.03;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1311,138,0
chrIV	615959	.	A	G	962	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.24;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:995,108,0
chrIV	615973	.	C	T	859	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=15.62;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:892,96,0
chrIV	615975	.	C	T	877	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.66;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:910,96,0
chrIV	616214	.	C	T	1697	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.73;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1730,183,0
chrIV	616559	.	G	A	2569	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.14;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2602,276,0
chrIV	616624	.	G	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=17.36;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1717,183,0
chrIV	616628	.	A	G	1725	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=17.25;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1758,189,0
chrIV	616689	.	T	C	1779	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.93;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1812,195,0
chrIV	616883	.	G	A	2978	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.02;SB=-1.553e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3011,324,0
chrIV	617177	.	T	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1609,174,0
chrIV	617367	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.65;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1625,168,0
chrIV	617371	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.32;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1480,159,0
chrIV	617421	.	A	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.16;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1585,174,0
chrIV	617569	.	G	C	2689	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.45;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2722,297,0
chrIV	617713	.	T	C	1583	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.6478;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.02;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1616,177,0
chrIV	617915	.	C	T	2656	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.59;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2689,279,0
chrIV	618038	.	G	A	2166	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.43;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2199,240,0
chrIV	618593	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.00;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1515,165,0
chrIV	619185	.	T	G	1511	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.89;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1544,174,0
chrIV	619621	.	C	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.42;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1567,165,0
chrIV	619655	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.68;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1509,162,0
chrIV	619809	.	G	A	944	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.67;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:977,102,0
chrIV	619941	.	C	T	967	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.3393;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=17.27;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1000,128,0
chrIV	619942	.	A	T	951	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.5506;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=17.29;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:984,126,0
chrIV	619943	.	A	C	993	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1386;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=17.42;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1026,131,0
chrIV	620108	.	T	C	843	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.73;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:876,93,0
chrIV	620254	.	G	A	3142	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.75;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3175,330,0
chrIV	620356	.	G	A	1945	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.10;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1978,204,0
chrIV	620379	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.810;DP=70;Dels=0.00;FS=15.318;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.515;QD=18.91;ReadPosRankSum=2.898;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:3,66:70:99:1357,147,0
chrIV	620403	.	A	G	1223	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.09;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1256,132,0
chrIV	620447	.	G	A	1545	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3504;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.46;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1578,165,0
chrIV	620589	.	A	G	2253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.5552;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.513;QD=19.94;ReadPosRankSum=2.406;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:2,111:113:99:2286,252,0
chrIV	620832	.	C	T	813	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.3839;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=15.34;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:93:846,93,0
chrIV	620914	.	T	C	880	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:99:913,99,0
chrIV	620946	.	T	C	532	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.056;QD=16.62;ReadPosRankSum=1.509;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:1,30:32:60:565,60,0
chrIV	620963	.	A	G	285	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=13.57;SB=-8.683e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:36:318,36,0
chrIV	621073	.	G	C	1445	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.80;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1478,165,0
chrIV	621239	.	A	G	923	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:99:956,108,0
chrIV	621336	.	T	C	687	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.63;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:720,81,0
chrIV	621339	.	C	G	663	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.09;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:78:696,78,0
chrIV	621560	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.01;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1596,171,0
chrIV	623653	.	G	A	2145	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.10;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2178,228,0
chrIV	623966	.	C	A	2069	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.11;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2102,222,0
chrIV	624521	.	A	G	2407	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.89;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2440,264,0
chrIV	624565	.	T	A	1656	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=19.26;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1689,183,0
chrIV	624583	.	T	C	1553	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.57;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1586,171,0
chrIV	624733	.	G	T	2672	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.27;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2705,291,0
chrIV	624782	.	G	C	2609	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.30;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2642,294,0
chrIV	624847	.	G	C	2198	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.98;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2231,249,0
chrIV	624920	.	T	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=62.1452;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.69;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1486,159,0
chrIV	624930	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=67;Dels=0.00;FS=2.658;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;MQRankSum=0.534;QD=20.34;ReadPosRankSum=2.303;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1396,153,0
chrIV	624969	.	T	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.69;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1486,159,0
chrIV	625056	.	C	T	2306	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.9713;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.06;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2339,246,0
chrIV	625173	.	A	G	1131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.613;QD=17.14;ReadPosRankSum=1.626;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1164,129,0
chrIV	625250	.	C	T	1361	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.01;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1394,147,0
chrIV	627941	.	A	G	1448	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.28;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1481,156,0
chrIV	628602	.	A	G	1015	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.52;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1048,114,0
chrIV	628869	.	T	A	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=8.92;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chrIV	629487	.	G	A	1380	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1413,150,0
chrIV	629532	.	G	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.13;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1364,150,0
chrIV	629595	.	T	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1902,213,0
chrIV	629725	.	G	A	1784	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1817,201,0
chrIV	632653	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.86;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1176,123,0
chrIV	637663	.	A	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.60;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1263,129,0
chrIV	638634	.	G	A	2308	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.082;QD=21.98;ReadPosRankSum=0.610;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2341,243,0
chrIV	638815	.	C	T	2549	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.17;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2582,276,0
chrIV	640048	.	C	T	3056	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.04;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3089,321,0
chrIV	640427	.	A	G	1895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.214;QD=21.29;ReadPosRankSum=1.693;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1928,213,0
chrIV	640463	.	G	A	1439	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.4580;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.55;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1472,156,0
chrIV	640565	.	A	G	1940	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.9157;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.32;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1973,213,0
chrIV	640997	.	T	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.63;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1828,192,0
chrIV	641111	.	C	T	2120	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.38;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2153,231,0
chrIV	641285	.	C	T	1490	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.91;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1523,159,0
chrIV	641507	.	T	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.80;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1406,150,0
chrIV	641786	.	T	A	2240	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.09;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2273,237,0
chrIV	642389	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.17;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1496,156,0
chrIV	643019	.	A	G	1124	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=17.03;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1157,129,0
chrIV	643077	.	T	G	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.193;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=1.305;QD=18.18;ReadPosRankSum=1.685;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1360,130,0
chrIV	643082	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=18.71;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1343,141,0
chrIV	643100	.	A	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=16.51;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1222,132,0
chrIV	643127	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=14.27;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1103,117,0
chrIV	643129	.	C	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=13.62;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1082,120,0
chrIV	643177	.	A	T	2263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.909;QD=22.41;ReadPosRankSum=1.698;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2296,240,0
chrIV	643210	.	G	A	2301	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2334,240,0
chrIV	643256	.	T	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=8.2295;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.13;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1621,177,0
chrIV	643436	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.76;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1309,135,0
chrIV	643602	.	A	G	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=72;Dels=0.00;FS=2.618;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.043;QD=19.86;ReadPosRankSum=2.901;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:3,68:72:99:1463,159,0
chrIV	643715	.	G	A	1189	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.49;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1222,129,0
chrIV	643747	.	A	G	827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.508;QD=14.77;ReadPosRankSum=2.362;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:93:860,93,0
chrIV	643760	.	C	T	914	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=15.76;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:947,99,0
chrIV	643795	.	C	T	891	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.47;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:96:924,96,0
chrIV	643844	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.69;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1028,108,0
chrIV	643929	.	T	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1246,141,0
chrIV	643973	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1401,144,0
chrIV	644054	.	T	C	773	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-1.313;QD=23.42;ReadPosRankSum=1.628;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:87:806,87,0
chrIV	644081	.	A	G	728	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.06;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:84:761,84,0
chrIV	644532	.	A	G	891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.722;QD=18.18;ReadPosRankSum=1.660;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:924,102,0
chrIV	644629	.	T	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7786;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.20;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1245,135,0
chrIV	645246	.	A	G	284	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.94;MQ0=0;MQRankSum=-1.734;QD=14.95;ReadPosRankSum=1.552;SB=-8.666e-03	GT:AD:DP:GQ:PL	1/1:1,18:19:36:317,36,0
chrIV	645586	.	A	G	86.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DP=37;Dels=0.00;FS=19.117;HaplotypeScore=2.6940;MLEAC=1;MLEAF=0.500;MQ=19.14;MQ0=19;MQRankSum=2.563;QD=2.32;ReadPosRankSum=3.154;SB=-2.847e+00	GT:AD:DP:GQ:PL	0/1:24,13:37:57:116,0,57
chrIV	645602	.	T	C	104.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=13;QD=4.01;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:13,13:26:15:137,15,0
chrIV	645604	.	A	T	109.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=12;QD=4.37;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:12,13:25:15:142,15,0
chrIV	645607	.	A	G	110.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=12;QD=4.41;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:12,13:25:15:143,15,0
chrIV	645610	.	C	A	111.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=13;QD=4.28;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:12,13:26:15:144,15,0
chrIV	645613	.	T	A	115.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=14;QD=4.27;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:14,13:27:15:148,15,0
chrIV	645616	.	A	T	110.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.09;MQ0=17;QD=3.68;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:14,16:30:15:143,15,0
chrIV	651420	.	G	T	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=13.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:59,6,0
chrIV	651423	.	A	T	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;MQRankSum=-0.736;QD=6.60;ReadPosRankSum=0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,2:3:6:51,6,0
chrIV	651528	.	A	G	105.26	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=2.29;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:0,46:46:15:138,15,0
chrIV	651534	.	T	A	136.13	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=2.84;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,48:48:18:169,18,0
chrIV	651540	.	C	A	173.06	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=3.33;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,52:52:21:206,21,0
chrIV	651580	.	C	T	634	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.26;MQ0=0;QD=7.64;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:69:667,69,0
chrIV	651590	.	C	T	905	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=10.40;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:938,99,0
chrIV	651672	.	G	A	3292.01	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=26.76;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3292,337,0
chrIV	651714	.	G	C	2433	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=23.39;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2466,273,0
chrIV	651778	.	C	A	2242	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=23.35;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2275,246,0
chrIV	651798	.	T	C	2018	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=19.78;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2051,225,0
chrIV	651813	.	C	T	2644	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=20.98;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2677,279,0
chrIV	651881	.	C	T	4975.01	PASS	AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=9.6565;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=0;QD=23.58;SB=-2.903e+03	GT:AD:DP:GQ:PL	1/1:0,210:211:99:4975,526,0
chrIV	651974	.	G	A	3401.01	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=24.47;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3401,354,0
chrIV	652069	.	A	T	2871	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=22.79;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2904,303,0
chrIV	652073	.	A	G	2470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.284;QD=20.25;ReadPosRankSum=1.704;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2503,273,0
chrIV	652106	.	C	A	2117	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=17.64;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2150,234,0
chrIV	652118	.	A	G	2023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;MQRankSum=-1.316;QD=15.80;ReadPosRankSum=2.411;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:2,126:128:99:2056,225,0
chrIV	652176	.	A	C	2158	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.8449;MLEAC=2;MLEAF=1.00;MQ=41.16;MQ0=0;MQRankSum=-1.207;QD=16.35;ReadPosRankSum=1.312;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:1,131:132:99:2191,226,0
chrIV	652186	.	G	C	2244	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=17.53;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2277,240,0
chrIV	652203	.	A	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=15.26;SB=-1.706e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2017,219,0
chrIV	652205	.	A	G	2162	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=16.26;SB=-1.729e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2195,237,0
chrIV	652318	.	T	C	2523	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=18.97;SB=-1.614e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2556,273,0
chrIV	652321	.	C	T	2737	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=20.89;SB=-1.670e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2770,294,0
chrIV	653066	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.47;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1454,162,0
chrIV	653068	.	T	A	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.492;QD=17.65;ReadPosRankSum=1.588;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1304,141,0
chrIV	653150	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.42;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1618,171,0
chrIV	653151	.	C	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=16.73;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1572,171,0
chrIV	653208	.	C	T	939	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=14.90;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:972,105,0
chrIV	653209	.	G	A	879	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=13.95;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:912,99,0
chrIV	653246	.	T	C	835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=3.707;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;MQRankSum=-1.732;QD=15.18;ReadPosRankSum=1.668;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:96:868,96,0
chrIV	653277	.	A	G	767	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=90.8344;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=15.04;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:800,87,0
chrIV	653323	.	T	G	757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.71;MQ0=0;MQRankSum=-1.213;QD=12.62;ReadPosRankSum=1.675;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:87:790,87,0
chrIV	653936	.	A	G	984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.491;QD=22.88;ReadPosRankSum=1.652;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:1017,111,0
chrIV	654086	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1233,129,0
chrIV	654179	.	T	C	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.9653;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.818;QD=18.43;ReadPosRankSum=1.636;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1360,150,0
chrIV	654239	.	A	G	1981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.033;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.390;QD=24.46;ReadPosRankSum=1.689;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:2014,222,0
chrIV	654341	.	A	G	905.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;DP=73;Dels=0.00;FS=10.585;HaplotypeScore=11.7909;MLEAC=1;MLEAF=0.500;MQ=55.70;MQ0=3;MQRankSum=-0.032;QD=12.40;ReadPosRankSum=0.210;SB=-5.792e+02	GT:AD:DP:GQ:PL	0/1:14,59:73:10:935,0,10
chrIV	654775	.	C	A	700	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=16.28;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:733,75,0
chrIV	654780	.	C	T	746	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=17.76;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:779,81,0
chrIV	654798	.	T	C	681	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=13.62;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:78:714,78,0
chrIV	654890	.	T	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.15;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1222,138,0
chrIV	654900	.	A	G	1230	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.16;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1263,141,0
chrIV	655011	.	G	A	2017	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.9500;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.39;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2050,213,0
chrIV	655491	.	G	A	680	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=16.59;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:75:713,75,0
chrIV	656349	.	T	C	2345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=110;Dels=0.00;FS=3.132;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.287;QD=21.32;ReadPosRankSum=1.700;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:1,108:110:99:2378,258,0
chrIV	656391	.	T	A	1992	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.64;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2025,210,0
chrIV	656658	.	T	C	1537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.488;QD=21.65;ReadPosRankSum=1.683;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1570,171,0
chrIV	656959	.	A	G	1606	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.04;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1639,180,0
chrIV	657111	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.15;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1282,135,0
chrIV	657198	.	G	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.87;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1682,180,0
chrIV	657366	.	G	A	451	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=13.67;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:51:484,51,0
chrIV	657792	.	A	G	714	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.83;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:81:747,81,0
chrIV	658436	.	T	G	855	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.43;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:888,96,0
chrIV	658469	.	T	C	674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.211;QD=16.44;ReadPosRankSum=1.648;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:75:707,75,0
chrIV	658478	.	C	T	770	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=16.74;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:803,87,0
chrIV	658643	.	C	T	991	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.39;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1024,108,0
chrIV	658682	.	G	A	1028	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.8545;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.69;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,52:55:99:1061,114,0
chrIV	658775	.	C	T	824	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.73;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:90:857,90,0
chrIV	659198	.	G	T	830	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:863,90,0
chrIV	659402	.	G	A	1398	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.51;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1431,156,0
chrIV	659467	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.29;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1758,192,0
chrIV	659689	.	T	C	1816	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.89;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1849,201,0
chrIV	659864	.	A	T	2650	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.31;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2683,282,0
chrIV	659912	.	G	C	2256	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.2483;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.70;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2289,252,0
chrIV	659970	.	C	T	2221	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.77;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2254,246,0
chrIV	660025	.	G	C	1641	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.79;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1674,183,0
chrIV	660107	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.67;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2045,216,0
chrIV	660131	.	C	T	1753	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.12;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1786,195,0
chrIV	660153	.	C	T	1135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.653;DP=99;Dels=0.00;FS=1.597;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.134;QD=11.46;ReadPosRankSum=3.712;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:6,92:99:99:1168,149,0
chrIV	660155	.	T	A	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=99;Dels=0.00;FS=1.655;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=1.708;QD=11.43;ReadPosRankSum=3.718;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:6,93:99:99:1165,149,0
chrIV	660197	.	C	T	2156	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.42;SB=-1.462e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2189,231,0
chrIV	660237	.	G	A	2302	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.01;FS=0.000;HaplotypeScore=16.3023;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.19;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2335,249,0
chrIV	660248	.	T	C	2275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=3.093;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.275;QD=21.46;ReadPosRankSum=1.699;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2308,246,0
chrIV	660411	.	T	C	2450	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.49;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2483,270,0
chrIV	660498	.	A	G	2214	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.50;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2247,252,0
chrIV	660681	.	C	G	1935	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.76;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1968,210,0
chrIV	660748	.	C	T	1787	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9864;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.53;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1820,195,0
chrIV	660773	.	T	C	1752	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.14;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1785,198,0
chrIV	660788	.	T	C	1787	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.22;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1820,201,0
chrIV	660950	.	A	G	2217	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.74;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2250,246,0
chrIV	661137	.	A	G	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-1.370;QD=17.77;ReadPosRankSum=1.692;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1561,171,0
chrIV	661159	.	G	T	1442	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=16.96;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1475,156,0
chrIV	661166	.	C	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=15.61;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1438,153,0
chrIV	661181	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=16.15;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1519,165,0
chrIV	661358	.	A	T	2072	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.7308;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.456;QD=21.14;ReadPosRankSum=1.659;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2105,222,0
chrIV	662378	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=5.006;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.456;QD=19.17;ReadPosRankSum=1.672;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1145,126,0
chrIV	662798	.	G	A	793	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.34;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:826,87,0
chrIV	662835	.	T	C	847	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=3.100;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.884;QD=17.29;ReadPosRankSum=1.591;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:96:880,96,0
chrIV	663117	.	A	G	917	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.13;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:950,102,0
chrIV	663819	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.07;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1335,144,0
chrIV	663861	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.33;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1398,147,0
chrIV	663915	.	T	C	1688	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.51;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1721,189,0
chrIV	664186	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=64;Dels=0.00;FS=11.044;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.302;QD=19.92;ReadPosRankSum=2.890;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:99:1308,144,0
chrIV	664257	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.89;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1806,189,0
chrIV	664347	.	T	G	892	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.27;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:925,102,0
chrIV	664395	.	G	A	773	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.34;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:806,87,0
chrIV	664456	.	A	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.62;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1105,123,0
chrIV	664477	.	T	C	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.179;QD=20.28;ReadPosRankSum=1.613;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1209,129,0
chrIV	665204	.	A	G	2212	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=24.58;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2245,237,0
chrIV	665718	.	C	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.79;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1913,198,0
chrIV	665841	.	A	G	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4047;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.303;QD=23.52;ReadPosRankSum=1.689;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1915,207,0
chrIV	666663	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=22.78;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1400,153,0
chrIV	666947	.	C	G	2175	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=20.33;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2208,237,0
chrIV	666968	.	G	A	1842	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=18.80;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1875,201,0
chrIV	666977	.	A	T	1666	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=16.66;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1699,183,0
chrIV	666994	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=15.44;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1423,147,0
chrIV	667014	.	C	A	971	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=11.84;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1004,105,0
chrIV	667027	.	C	T	826	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=12.15;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:90:859,90,0
chrIV	667309	.	G	A	1712	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=22.23;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1745,192,0
chrIV	667439	.	C	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.60;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1072,117,0
chrIV	667469	.	A	T	959	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.85;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:992,102,0
chrIV	667473	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.41;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1135,120,0
chrIV	667576	.	T	G	1519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=4.713;HaplotypeScore=5.9435;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.264;QD=20.25;ReadPosRankSum=1.685;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1552,168,0
chrIV	667625	.	G	A	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8134;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.455;QD=18.08;ReadPosRankSum=1.686;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1389,147,0
chrIV	667644	.	T	C	1085	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=19.37;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1118,123,0
chrIV	667780	.	T	C	1051	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=19.11;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1084,120,0
chrIV	667858	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.7210;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=21.29;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1694,180,0
chrIV	668476	.	C	T	865	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;QD=16.63;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:898,93,0
chrIV	668554	.	A	C	1918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-0.354;QD=20.62;ReadPosRankSum=1.695;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1951,213,0
chrIV	668626	.	T	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=21.18;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1304,138,0
chrIV	668861	.	G	A	500	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.23;SB=-1.210e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:57:533,57,0
chrIV	669064	.	A	G	929	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.11;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:99:962,105,0
chrIV	670000	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.79;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1499,165,0
chrIV	670255	.	C	T	2045	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=25.89;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2078,219,0
chrIV	670324	.	T	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.57;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1452,156,0
chrIV	670418	.	A	T	2245	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.23;SB=-1.308e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2278,240,0
chrIV	670636	.	G	C	1645	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.91;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1678,186,0
chrIV	670771	.	A	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.00;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1986,216,0
chrIV	670957	.	G	A	1720	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.57;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1753,189,0
chrIV	671025	.	C	T	2443	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=22.83;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2476,258,0
chrIV	671041	.	T	A	2634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=124;Dels=0.00;FS=3.716;HaplotypeScore=4.7278;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.779;QD=21.24;ReadPosRankSum=1.703;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2667,276,0
chrIV	671079	.	A	G	2350	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.26;SB=-1.569e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2383,252,0
chrIV	671086	.	G	C	2184	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.05;SB=-1.487e+03	GT:AD:DP:GQ:PL	1/1:0,116:121:99:2217,240,0
chrIV	671207	.	G	A	1663	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.17;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1696,174,0
chrIV	671226	.	C	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.49;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1529,165,0
chrIV	671379	.	T	C	2599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=118;Dels=0.00;FS=3.085;HaplotypeScore=8.2375;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.734;QD=22.03;ReadPosRankSum=1.673;SB=-1.514e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2632,288,0
chrIV	671460	.	G	A	2229	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.52;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2262,246,0
chrIV	671508	.	G	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.95;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1939,201,0
chrIV	671547	.	T	C	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.577;QD=16.68;ReadPosRankSum=1.675;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,59:62:99:1067,117,0
chrIV	671559	.	T	A	904	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.73;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:937,99,0
chrIV	671820	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.47;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1896,210,0
chrIV	671958	.	T	C	1636	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.04;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1669,183,0
chrIV	671979	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.52;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1410,153,0
chrIV	672153	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.02;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1200,129,0
chrIV	672351	.	C	T	2235	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.56;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2268,237,0
chrIV	672752	.	G	A	1672	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1705,177,0
chrIV	672865	.	A	G	1684	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.54;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1717,189,0
chrIV	673017	.	A	G	1566	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.06;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1599,168,0
chrIV	673237	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.326;QD=22.17;ReadPosRankSum=1.682;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1563,171,0
chrIV	673855	.	G	T	2072	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.14;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2105,225,0
chrIV	673875	.	A	G	1800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.753;QD=19.15;ReadPosRankSum=1.694;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:1,91:94:99:1833,201,0
chrIV	673957	.	T	C	1723	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1357;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.76;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1756,189,0
chrIV	673965	.	G	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6381;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.42;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1781,192,0
chrIV	674060	.	G	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.00;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1574,165,0
chrIV	674236	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.37;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1581,171,0
chrIV	674321	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.24;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1647,177,0
chrIV	674440	.	C	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.72;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1336,138,0
chrIV	674446	.	C	T	1228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=1.675;QD=20.47;ReadPosRankSum=1.501;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1261,129,0
chrIV	674458	.	T	G	1229	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.82;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1262,135,0
chrIV	674519	.	A	G	849	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.87;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:882,96,0
chrIV	674701	.	C	T	826	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.32;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:93:859,93,0
chrIV	674716	.	C	G	859	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.47;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:96:892,96,0
chrIV	674810	.	A	G	890	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.668;QD=16.48;ReadPosRankSum=1.668;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:923,99,0
chrIV	674879	.	C	T	909	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=17.48;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:942,102,0
chrIV	675008	.	A	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.20;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1144,129,0
chrIV	675634	.	T	C	1242	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.41;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1275,141,0
chrIV	675790	.	C	A	747	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.67;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:780,84,0
chrIV	675810	.	T	A	626	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=16.05;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:659,72,0
chrIV	675833	.	A	G	839	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.85;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:872,96,0
chrIV	675841	.	C	G	853	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=18.15;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:886,96,0
chrIV	676965	.	C	T	2526	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.54;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,119:123:99:2559,276,0
chrIV	677034	.	C	T	3072	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.76;SB=-1.437e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3105,321,0
chrIV	677241	.	G	A	1791	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1824,189,0
chrIV	677658	.	A	G	1148	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.50;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1181,132,0
chrIV	678110	.	G	A	1076	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.21;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1109,114,0
chrIV	678128	.	C	T	1387	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=19.54;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1420,150,0
chrIV	678156	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.797;QD=18.41;ReadPosRankSum=1.677;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1193,132,0
chrIV	678268	.	T	C	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.127;QD=23.70;ReadPosRankSum=1.677;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1526,162,0
chrIV	678436	.	G	A	1801	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.70;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1834,189,0
chrIV	678773	.	T	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.46;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1448,153,0
chrIV	678781	.	T	C	1188	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.14;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1221,132,0
chrIV	678799	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.21;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1162,123,0
chrIV	679260	.	A	G	1321	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.43;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1354,150,0
chrIV	679438	.	A	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1172,123,0
chrIV	679489	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1136,120,0
chrIV	679624	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.618;QD=22.61;ReadPosRankSum=2.371;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1435,159,0
chrIV	679781	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.173;QD=19.97;ReadPosRankSum=1.676;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1271,138,0
chrIV	679905	.	T	C	1714	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.81;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1747,186,0
chrIV	680244	.	G	A	2187	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.87;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2220,252,0
chrIV	680316	.	C	A	1787	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.1195;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.51;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1820,189,0
chrIV	680423	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.32;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1685,186,0
chrIV	680490	.	G	C	2694	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.43;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2727,303,0
chrIV	680639	.	A	G	1044	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.448;QD=17.11;ReadPosRankSum=1.675;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1077,120,0
chrIV	680696	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.27;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1401,147,0
chrIV	680727	.	G	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.52;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1475,153,0
chrIV	680751	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.46;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1181,126,0
chrIV	680772	.	A	T	1205	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.75;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1238,129,0
chrIV	680813	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=15.78;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1185,126,0
chrIV	681234	.	G	A	1431	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.36;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1464,159,0
chrIV	681246	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.83;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1366,150,0
chrIV	681304	.	G	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.32;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1115,117,0
chrIV	681615	.	C	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=20.35;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1356,144,0
chrIV	681648	.	T	C	1319	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.62;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1352,147,0
chrIV	681664	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.51;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1366,150,0
chrIV	681886	.	C	T	615	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=34.6033;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=14.64;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:81:648,81,0
chrIV	681918	.	C	T	830	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=13.17;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:90:863,90,0
chrIV	681959	.	T	A	670	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=12.18;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:75:703,75,0
chrIV	681960	.	T	G	664	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=12.07;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:75:697,75,0
chrIV	681992	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.060;QD=17.34;ReadPosRankSum=1.673;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1039,117,0
chrIV	682052	.	A	G	1679	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.44;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1712,180,0
chrIV	682085	.	G	A	1516	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.85;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1549,165,0
chrIV	682178	.	C	T	1521	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.37;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1554,162,0
chrIV	682303	.	T	C	2679	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=23.09;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2712,291,0
chrIV	682420	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.93;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1776,183,0
chrIV	682505	.	T	G	1222	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=15.87;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1255,138,0
chrIV	682509	.	C	G	1382	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.06;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1415,156,0
chrIV	682954	.	A	G	1019	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.16;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1052,114,0
chrIV	682960	.	T	C	935	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=22.26;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:968,105,0
chrIV	683520	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.96;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1563,168,0
chrIV	683768	.	T	C	2110	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.1295;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.75;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2143,237,0
chrIV	683805	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.56;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1719,180,0
chrIV	683812	.	G	A	1834	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.61;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1867,201,0
chrIV	683834	.	G	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.92;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1527,162,0
chrIV	683890	.	C	T	1926	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.20;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1959,201,0
chrIV	683918	.	C	T	2017	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.8170;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.92;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2050,216,0
chrIV	684013	.	T	G	2526	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=23.61;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2559,270,0
chrIV	684395	.	G	A	2002	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.85;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2035,213,0
chrIV	685013	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.19;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1320,138,0
chrIV	685091	.	A	T	1938	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.78;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1971,210,0
chrIV	685142	.	G	A	2000	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.83;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2033,219,0
chrIV	685189	.	A	T	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=73;Dels=0.00;FS=3.827;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.841;QD=21.26;ReadPosRankSum=1.683;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1585,168,0
chrIV	685531	.	C	G	1869	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.88;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1902,207,0
chrIV	685659	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.78;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1605,174,0
chrIV	685708	.	T	G	1492	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.31;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1525,165,0
chrIV	685822	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0260;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1541,162,0
chrIV	685980	.	G	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.15;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2400,252,0
chrIV	686038	.	G	A	1838	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.18;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1871,195,0
chrIV	686560	.	A	G	1881	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8966;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.94;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1914,207,0
chrIV	686865	.	A	G	1714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.124;QD=19.70;ReadPosRankSum=1.691;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,83:87:99:1747,189,0
chrIV	686871	.	T	C	1788	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=88;Dels=0.00;FS=6.173;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=-0.483;QD=20.32;ReadPosRankSum=2.920;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1821,198,0
chrIV	687255	.	C	T	2262	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.5586;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=20.38;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2295,249,0
chrIV	687279	.	T	G	2416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.9054;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=1.480;QD=21.96;ReadPosRankSum=1.165;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2449,264,0
chrIV	687449	.	G	A	2823	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.21;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2856,300,0
chrIV	687533	.	A	G	1814	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.16;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1847,213,0
chrIV	687534	.	G	A	1846	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.29;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1879,213,0
chrIV	687632	.	G	A	1562	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5184;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.28;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1595,165,0
chrIV	687636	.	G	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.53;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1537,159,0
chrIV	687669	.	C	T	1632	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.66;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1665,174,0
chrIV	687745	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.830;DP=77;Dels=0.00;FS=2.490;HaplotypeScore=3.8955;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=0.013;QD=17.47;ReadPosRankSum=2.382;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1378,153,0
chrIV	687746	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.213;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=-0.133;QD=18.11;ReadPosRankSum=2.454;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1409,153,0
chrIV	687807	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=7.5407;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.64;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1722,174,0
chrIV	687830	.	A	G	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.036;QD=19.44;ReadPosRankSum=1.696;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1919,213,0
chrIV	688060	.	G	T	668	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=45.7332;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=11.72;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:75:701,75,0
chrIV	688155	.	T	A	2086	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=21.51;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2119,234,0
chrIV	688177	.	G	A	1821	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.39;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,93:99:99:1854,204,0
chrIV	688353	.	A	G	2060	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=24.24;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2093,225,0
chrIV	688432	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=18.97;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1759,186,0
chrIV	688437	.	C	A	1699	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=18.27;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1732,177,0
chrIV	688474	.	A	G	1876	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.39;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1909,204,0
chrIV	688530	.	G	A	1766	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.02;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1799,186,0
chrIV	688585	.	T	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=19.42;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1373,144,0
chrIV	688602	.	C	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=15.08;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:79:99:1224,126,0
chrIV	688608	.	G	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=15.33;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1336,141,0
chrIV	688643	.	A	T	1557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=97;Dels=0.00;FS=5.888;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=0.482;QD=16.05;ReadPosRankSum=1.625;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1590,168,0
chrIV	688689	.	T	G	2259	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.72;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2292,252,0
chrIV	688821	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=7.057;HaplotypeScore=9.7734;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.145;QD=20.47;ReadPosRankSum=2.392;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1773,192,0
chrIV	688841	.	C	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.51;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1612,171,0
chrIV	689175	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=12.3359;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.30;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1770,192,0
chrIV	689214	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=83;Dels=0.00;FS=2.898;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.406;QD=18.47;ReadPosRankSum=2.390;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:3,80:83:99:1566,171,0
chrIV	689315	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.08;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1380,147,0
chrIV	689403	.	A	G	1694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=2.926;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.449;QD=19.93;ReadPosRankSum=2.392;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1727,186,0
chrIV	689526	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=6.193;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-1.105;QD=18.35;ReadPosRankSum=2.290;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1464,159,0
chrIV	689532	.	C	G	1396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=77;Dels=0.00;FS=3.367;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.231;QD=18.13;ReadPosRankSum=0.729;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1429,136,0
chrIV	689810	.	A	C	1108	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.671;QD=17.87;ReadPosRankSum=1.676;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1141,123,0
chrIV	690128	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=18.66;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1227,132,0
chrIV	690129	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=19.56;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1285,135,0
chrIV	690152	.	C	T	1167	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=17.95;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1200,126,0
chrIV	690212	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.33;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1398,147,0
chrIV	690267	.	C	A	1358	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.56;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1391,144,0
chrIV	690503	.	T	A	2440	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.65;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2473,258,0
chrIV	690684	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.77;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1490,168,0
chrIV	690751	.	G	A	914	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:947,99,0
chrIV	690855	.	C	T	2319	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.67;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2352,246,0
chrIV	690909	.	C	G	2941	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=22.45;SB=-1.634e+03	GT:AD:DP:GQ:PL	1/1:0,129:131:99:2974,321,0
chrIV	690968	.	C	G	2677	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.69;SB=-1.470e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2710,294,0
chrIV	691213	.	G	A	995	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2137;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=16.86;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1028,108,0
chrIV	691313	.	C	A	1339	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=127.5791;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.69;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1372,144,0
chrIV	691366	.	C	G	695	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=62.32;MQ0=0;QD=17.82;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:78:728,78,0
chrIV	691713	.	C	T	660	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.00;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:72:693,72,0
chrIV	691810	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.90;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1287,141,0
chrIV	691948	.	A	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.16;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1695,180,0
chrIV	691984	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.73;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1962,204,0
chrIV	692071	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.71;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1618,174,0
chrIV	692140	.	C	T	1383	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.28;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1416,147,0
chrIV	692149	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.41;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1156,117,0
chrIV	692212	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.02;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1155,120,0
chrIV	692320	.	C	T	2125	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.46;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2158,225,0
chrIV	692518	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.78;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1155,123,0
chrIV	692575	.	A	G	979	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9685;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.59;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1012,111,0
chrIV	692593	.	A	G	817	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=15.42;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:850,96,0
chrIV	692602	.	A	G	883	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=1.672;QD=15.49;ReadPosRankSum=1.672;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:916,99,0
chrIV	692655	.	T	A	1227	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.04;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1260,132,0
chrIV	692797	.	G	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.32;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1760,183,0
chrIV	692839	.	T	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.83;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1064,117,0
chrIV	693070	.	G	C	1960	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.02;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1993,219,0
chrIV	693184	.	T	C	1572	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.15;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1605,171,0
chrIV	693255	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.32;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1376,144,0
chrIV	693728	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=24.94;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1729,189,0
chrIV	693982	.	G	A	2362	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.02;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=22.28;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2395,249,0
chrIV	694033	.	T	C	1877	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=19.97;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1910,213,0
chrIV	694079	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=20.9125;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=16.64;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1447,156,0
chrIV	694241	.	C	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=124.3409;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=17.97;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1327,138,0
chrIV	694457	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.98;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1229,135,0
chrIV	694473	.	T	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.47;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1396,150,0
chrIV	694503	.	C	T	1523	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.57;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1556,171,0
chrIV	694556	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.53;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,81:86:99:1541,168,0
chrIV	694587	.	C	T	1753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=3.597;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=1.334;QD=19.92;ReadPosRankSum=0.577;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1786,189,0
chrIV	694789	.	A	C	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=6.320;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-1.617;QD=24.45;ReadPosRankSum=1.675;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1500,162,0
chrIV	694831	.	A	C	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=5.019;HaplotypeScore=31.5654;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.347;QD=20.20;ReadPosRankSum=1.668;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1124,123,0
chrIV	695272	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.36;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1330,144,0
chrIV	695461	.	G	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.89;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1498,156,0
chrIV	695576	.	A	C	2051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.610;DP=106;Dels=0.00;FS=15.084;HaplotypeScore=16.0626;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-1.010;QD=19.35;ReadPosRankSum=2.934;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:3,103:106:99:2084,228,0
chrIV	695611	.	T	C	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.754;QD=18.85;ReadPosRankSum=1.691;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1635,183,0
chrIV	695620	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=18.36;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1557,168,0
chrIV	695635	.	C	T	1550	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.87;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1583,168,0
chrIV	695803	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=67;Dels=0.00;FS=3.424;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.417;QD=21.36;ReadPosRankSum=1.575;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1464,159,0
chrIV	696106	.	C	G	1482	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.17;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1515,162,0
chrIV	696116	.	A	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.74;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1251,135,0
chrIV	696283	.	T	C	1751	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.62;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1784,198,0
chrIV	696486	.	G	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.68;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1415,147,0
chrIV	696499	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-1.601;QD=15.86;ReadPosRankSum=1.601;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1302,141,0
chrIV	696556	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.59;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1757,183,0
chrIV	696637	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.91;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1501,162,0
chrIV	696745	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.91;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1742,186,0
chrIV	696886	.	A	G	2505	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.86;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2538,273,0
chrIV	696979	.	G	A	2413	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.95;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2446,255,0
chrIV	697118	.	A	G	1385	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.98;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1418,156,0
chrIV	700210	.	A	G	1737	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.46;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1770,189,0
chrIV	700250	.	G	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.69;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1916,207,0
chrIV	700440	.	C	T	2060	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.9782;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.15;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2093,216,0
chrIV	700614	.	A	G	1474	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1507,165,0
chrIV	700773	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=6.730;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=0.149;QD=21.40;ReadPosRankSum=2.365;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1274,138,0
chrIV	700855	.	G	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.81;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1594,165,0
chrIV	701064	.	A	G	1083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=55;Dels=0.00;FS=3.522;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.834;QD=19.69;ReadPosRankSum=1.604;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1116,123,0
chrIV	701178	.	G	A	711	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;QD=12.05;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:78:744,78,0
chrIV	701238	.	C	G	1418	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=21.16;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1451,159,0
chrIV	701262	.	T	C	1270	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.84;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1303,141,0
chrIV	701279	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.327;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.732;QD=20.37;ReadPosRankSum=1.683;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1479,159,0
chrIV	701393	.	G	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4751;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.63;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1436,156,0
chrIV	701448	.	T	C	1169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.231;QD=19.48;ReadPosRankSum=1.617;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1202,135,0
chrIV	701457	.	G	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=22.70;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1304,135,0
chrIV	701511	.	T	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=20.68;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1853,198,0
chrIV	701637	.	C	T	2939	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.33;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2972,315,0
chrIV	701674	.	G	C	2727	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.72;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2760,291,0
chrIV	701697	.	C	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.20;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1703,177,0
chrIV	701710	.	C	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.74;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1551,159,0
chrIV	701739	.	C	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=16.47;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1153,120,0
chrIV	702480	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1665,183,0
chrIV	702555	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.14;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1143,123,0
chrIV	702967	.	A	G	1561	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0805;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.65;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1594,171,0
chrIV	703125	.	C	T	3918.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.5008;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.61;SB=-1.372e+03	GT:AD:DP:GQ:PL	1/1:0,151:153:99:3918,406,0
chrIV	703275	.	A	G	2553	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.00;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2586,285,0
chrIV	703299	.	C	A	2116	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.54;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2149,237,0
chrIV	703359	.	G	A	2101	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6678;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=18.27;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2134,225,0
chrIV	703386	.	G	C	2266	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=18.57;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2299,243,0
chrIV	703399	.	C	A	2215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=4.317;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.450;QD=17.44;ReadPosRankSum=0.232;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:1,126:127:99:2248,246,0
chrIV	703418	.	A	T	2860	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.9280;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.32;SB=-1.659e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:2893,303,0
chrIV	703497	.	G	A	2616	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.52;SB=-1.390e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2649,288,0
chrIV	703521	.	G	A	2788	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.67;SB=-1.578e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2821,300,0
chrIV	703850	.	G	A	2323	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5821;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.51;SB=-1.361e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2356,249,0
chrIV	703905	.	C	T	1872	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.50;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1905,213,0
chrIV	704172	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1435,156,0
chrIV	705815	.	C	T	2034	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.60;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2067,219,0
chrIV	705884	.	G	A	2948	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.98;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2981,315,0
chrIV	706032	.	T	C	2002	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.00;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2035,219,0
chrIV	706601	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.14;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1450,156,0
chrIV	707014	.	A	C	1012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.247;QD=19.84;ReadPosRankSum=1.455;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:99:1045,114,0
chrIV	707342	.	G	A	918	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=15.56;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:951,99,0
chrIV	707353	.	A	G	810	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=16.20;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:843,93,0
chrIV	707384	.	A	G	715	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=15.54;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:748,84,0
chrIV	707654	.	T	C	1452	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.69;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1485,159,0
chrIV	707900	.	A	T	1840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.110;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.472;QD=20.91;ReadPosRankSum=1.614;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1873,204,0
chrIV	707905	.	T	A	1866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=91;Dels=0.00;FS=3.212;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.905;QD=20.51;ReadPosRankSum=1.693;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1899,198,0
chrIV	708341	.	T	C	1840	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.17;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1873,204,0
chrIV	708639	.	G	A	2457	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.9286;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.96;SB=-1.386e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2490,261,0
chrIV	709011	.	T	C	2007	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.58;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2040,222,0
chrIV	709040	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.296;QD=18.61;ReadPosRankSum=1.605;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1559,168,0
chrIV	709210	.	G	C	1948	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.29;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1981,207,0
chrIV	709257	.	A	G	1801	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-0.073;QD=15.13;ReadPosRankSum=1.703;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,118:119:99:1834,204,0
chrIV	709260	.	T	C	1805	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.726;DP=117;Dels=0.00;FS=24.059;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-0.411;QD=15.43;ReadPosRankSum=3.766;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:5,112:117:99:1838,195,0
chrIV	709261	.	A	C	1800	SnpCluster	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=15.25;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,117:118:99:1833,195,0
chrIV	709623	.	T	C	2031	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.89;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2064,228,0
chrIV	709887	.	C	T	1600	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.33;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1633,171,0
chrIV	709938	.	A	G	1919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.2842;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.655;QD=21.32;ReadPosRankSum=0.654;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1952,210,0
chrIV	710100	.	G	A	1488	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.37;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1521,165,0
chrIV	710109	.	G	A	1457	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.21;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1490,159,0
chrIV	710130	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.57;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1501,156,0
chrIV	710371	.	A	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.00;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1545,165,0
chrIV	710478	.	A	G	1058	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.174;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.027;QD=19.59;ReadPosRankSum=1.668;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1091,117,0
chrIV	710492	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.73;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1082,117,0
chrIV	710715	.	C	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.09;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1198,126,0
chrIV	710853	.	C	T	1083	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.24;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1116,117,0
chrIV	710996	.	T	C	1115	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.72;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1148,123,0
chrIV	711174	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.64;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1215,126,0
chrIV	711312	.	T	C	572	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.33;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:66:605,66,0
chrIV	711314	.	T	C	570	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.27;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:66:603,66,0
chrIV	711528	.	A	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.28;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1247,141,0
chrIV	711909	.	C	G	1095	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.91;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1128,120,0
chrIV	711924	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.02;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1193,129,0
chrIV	711956	.	G	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.58;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1185,123,0
chrIV	712092	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.60;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1236,132,0
chrIV	712122	.	G	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.80;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1422,150,0
chrIV	712473	.	G	A	879	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.98;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:912,99,0
chrIV	712689	.	C	A	2548	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=23.16;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2581,288,0
chrIV	712857	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.77;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1274,141,0
chrIV	713009	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=0.651;QD=14.48;ReadPosRankSum=2.651;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:3,81:84:99:1249,135,0
chrIV	713011	.	G	C	1243	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=14.3742;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=14.62;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1276,135,0
chrIV	713074	.	G	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=14.31;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,94:99:99:1450,153,0
chrIV	713084	.	G	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=16.34;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1553,159,0
chrIV	713108	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;QD=17.54;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1524,159,0
chrIV	713109	.	C	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=17.25;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1482,159,0
chrIV	713130	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=16.64;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1098,117,0
chrIV	713166	.	C	T	1261	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=17.27;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1294,141,0
chrIV	713336	.	T	A	1383	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.61;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1416,156,0
chrIV	714612	.	A	T	1385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DP=77;Dels=0.00;FS=3.183;HaplotypeScore=4.6812;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.022;QD=17.99;ReadPosRankSum=0.472;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1418,150,0
chrIV	714714	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.52;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1249,132,0
chrIV	714933	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.94;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1302,138,0
chrIV	715026	.	T	C	1145	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.09;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1178,129,0
chrIV	715352	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.87;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1634,180,0
chrIV	715627	.	C	T	1493	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.16;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1526,162,0
chrIV	715629	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.42;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1496,162,0
chrIV	715691	.	G	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=17.63;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1673,177,0
chrIV	715715	.	T	A	2025	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.05;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2058,219,0
chrIV	715933	.	C	T	1846	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7096;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.47;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1879,198,0
chrIV	716020	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.62;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1395,144,0
chrIV	716118	.	T	C	1217	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.02;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1250,138,0
chrIV	716179	.	T	C	717	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.49;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:81:750,81,0
chrIV	716374	.	A	G	2003	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.85;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2036,219,0
chrIV	716407	.	A	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.47;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1691,180,0
chrIV	716448	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=18.01;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1564,165,0
chrIV	716464	.	T	C	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=79;Dels=0.00;FS=2.462;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.244;QD=15.23;ReadPosRankSum=2.860;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1236,135,0
chrIV	716510	.	A	G	911	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.3607;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=14.46;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:63:99:944,105,0
chrIV	716521	.	A	G	898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=4.284;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-1.028;QD=14.97;ReadPosRankSum=1.615;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:931,102,0
chrIV	716641	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.225;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.563;QD=22.72;ReadPosRankSum=1.690;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1896,207,0
chrIV	716654	.	G	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.40;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1760,183,0
chrIV	716660	.	C	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.25;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1939,213,0
chrIV	716832	.	G	A	1791	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.66;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1824,189,0
chrIV	716915	.	C	T	1718	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.30;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1751,186,0
chrIV	717012	.	A	T	2092	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.02;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2125,222,0
chrIV	717247	.	T	C	937	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.52;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,45:48:99:970,105,0
chrIV	717264	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=21.68;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1052,117,0
chrIV	717285	.	A	G	988	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.48;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1021,114,0
chrIV	717372	.	T	C	669	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=15.93;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:78:702,78,0
chrIV	717377	.	G	C	703	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.03;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:78:736,78,0
chrIV	717532	.	C	T	1607	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.14;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1640,171,0
chrIV	717546	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.97;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1591,165,0
chrIV	717634	.	C	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.26;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1246,132,0
chrIV	717729	.	G	C	1013	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=19.11;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1046,117,0
chrIV	717736	.	T	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=20.63;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1085,120,0
chrIV	717744	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=19.88;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1166,123,0
chrIV	717791	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=15.18;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1232,135,0
chrIV	717813	.	C	T	1113	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=15.46;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1146,120,0
chrIV	717834	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=12.66;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1286,138,0
chrIV	717840	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=15.63;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1596,171,0
chrIV	717936	.	G	A	2145	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.10;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2178,231,0
chrIV	717987	.	T	C	2010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=92;Dels=0.00;FS=2.597;HaplotypeScore=10.3829;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.500;QD=21.85;ReadPosRankSum=2.812;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:3,88:92:99:2043,228,0
chrIV	719215	.	G	A	1744	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.05;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1777,186,0
chrIV	719380	.	G	A	2049	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.57;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2082,225,0
chrIV	719391	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.74;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1775,192,0
chrIV	719554	.	C	T	1780	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.42;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1813,186,0
chrIV	719695	.	C	T	1890	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.72;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1923,207,0
chrIV	719745	.	A	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.02;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1486,162,0
chrIV	719860	.	C	G	1942	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.22;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1975,216,0
chrIV	719959	.	G	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.64;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1388,144,0
chrIV	720061	.	A	G	1785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.468;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.520;QD=22.04;ReadPosRankSum=1.689;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1818,198,0
chrIV	720439	.	T	A	1605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=0.836;QD=18.66;ReadPosRankSum=1.691;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1638,174,0
chrIV	720440	.	C	T	1554	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.66;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1587,171,0
chrIV	720645	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.73;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:99:945,105,0
chrIV	720763	.	G	T	1131	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.34;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1164,120,0
chrIV	720993	.	C	G	1909	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.6008;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=26.15;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1942,210,0
chrIV	721110	.	G	A	1431	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.71;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1464,153,0
chrIV	721119	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.46;SB=-1.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1181,129,0
chrIV	721283	.	A	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.37;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1072,117,0
chrIV	721577	.	A	T	646	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=22.28;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:72:679,72,0
chrIV	722011	.	C	T	512	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=15.06;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:63:545,63,0
chrIV	722058	.	C	T	606	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=15.54;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:69:639,69,0
chrIV	722085	.	A	G	674	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=15.67;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:75:707,75,0
chrIV	722265	.	A	G	130.13	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=5.92;SB=-5.714e+01	GT:AD:DP:GQ:PL	1/1:0,21:22:18:163,18,0
chrIV	722306	.	G	A	310	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=12.40;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:36:343,36,0
chrIV	722348	.	A	G	446	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=26.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,17:17:51:479,51,0
chrIV	722407	.	A	G	765	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=23.91;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:32:84:798,84,0
chrIV	722585	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=25.31;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1400,147,0
chrIV	722672	.	T	C	856	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=20.88;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:889,99,0
chrIV	722772	.	T	C	803	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.12;SB=-1.850e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:836,93,0
chrIV	722776	.	A	G	875	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.83;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:908,102,0
chrIV	722840	.	A	C	666	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.115;QD=14.80;ReadPosRankSum=1.501;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:78:699,78,0
chrIV	722922	.	A	G	922	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=17.8146;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=13.97;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:955,102,0
chrIV	722940	.	C	T	711	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=18.5552;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=8.89;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:81:744,81,0
chrIV	722977	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=17.94;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1289,135,0
chrIV	723133	.	G	A	1690	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=24.14;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1723,189,0
chrIV	723157	.	C	T	1691	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.55;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1724,180,0
chrIV	723163	.	G	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.99;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1682,183,0
chrIV	723345	.	G	A	2139	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.39;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2172,228,0
chrIV	723847	.	C	T	2858	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.24;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2891,303,0
chrIV	724081	.	G	A	2259	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.53;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,93:96:99:2292,237,0
chrIV	724549	.	A	C	955	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.70;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:988,105,0
chrIV	724570	.	A	G	920	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.17;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:953,105,0
chrIV	724610	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.36;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1400,144,0
chrIV	725068	.	A	G	1776	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.14;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1809,201,0
chrIV	725095	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.01;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1694,180,0
chrIV	725245	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1613,168,0
chrIV	725461	.	T	C	2133	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.18;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2166,234,0
chrIV	726673	.	A	G	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=2.978;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.938;QD=20.51;ReadPosRankSum=2.386;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1633,177,0
chrIV	726762	.	C	G	1487	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.87;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1520,165,0
chrIV	727048	.	C	T	1207	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.46;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1240,132,0
chrIV	727120	.	G	A	1596	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.55;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1629,171,0
chrIV	727318	.	T	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.62;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1338,138,0
chrIV	727575	.	G	A	1977	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.72;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2010,210,0
chrIV	727933	.	C	T	2036	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.37;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:2069,219,0
chrIV	728812	.	A	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.27;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1258,132,0
chrIV	728918	.	C	T	941	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.60;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:974,102,0
chrIV	728966	.	A	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.57;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1144,126,0
chrIV	730085	.	A	G	2460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.0339;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.634;QD=20.00;ReadPosRankSum=1.704;SB=-1.503e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2493,270,0
chrIV	730110	.	G	A	2163	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.31;SB=-1.410e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2196,228,0
chrIV	730125	.	G	A	2123	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8540;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=18.96;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2156,222,0
chrIV	730434	.	G	A	2266	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.79;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2299,240,0
chrIV	730652	.	G	C	1645	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.50;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1678,180,0
chrIV	730704	.	G	A	1326	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.42;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1359,150,0
chrIV	730734	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.71;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1521,165,0
chrIV	731928	.	T	C	942	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.43;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:99:975,105,0
chrIV	732164	.	T	C	801	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:93:834,93,0
chrIV	732665	.	G	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.76;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1147,117,0
chrIV	733047	.	C	T	2131	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.49;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2164,225,0
chrIV	733117	.	G	A	2207	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.07;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2240,234,0
chrIV	733663	.	C	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.71;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1876,195,0
chrIV	733767	.	T	C	2007	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.35;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2040,228,0
chrIV	735360	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1729,192,0
chrIV	735567	.	A	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.4637;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.73;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1393,144,0
chrIV	735618	.	C	T	1396	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.15;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1429,150,0
chrIV	736014	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.247;QD=22.08;ReadPosRankSum=1.683;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1623,174,0
chrIV	736692	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1773,183,0
chrIV	739050	.	C	T	1538	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.07;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1571,171,0
chrIV	739056	.	G	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.73;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1533,159,0
chrIV	739488	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.51;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1539,168,0
chrIV	743850	.	T	C	2216	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.85;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2249,243,0
chrIV	744329	.	A	T	2306	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.07;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2339,249,0
chrIV	745067	.	G	A	829	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.42;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:862,93,0
chrIV	745574	.	G	A	1593	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.43;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1626,171,0
chrIV	745766	.	G	A	1228	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.74;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1261,132,0
chrIV	745814	.	C	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.40;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1137,123,0
chrIV	745916	.	C	T	1755	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=21.14;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1788,195,0
chrIV	745998	.	A	T	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=73;Dels=0.00;FS=5.903;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.514;QD=18.29;ReadPosRankSum=2.515;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1368,141,0
chrIV	746103	.	G	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.02;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1041,108,0
chrIV	746167	.	C	T	1066	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.21;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1099,114,0
chrIV	746186	.	C	T	1198	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.60;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1231,129,0
chrIV	747029	.	T	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=61.33;MQ0=0;QD=20.89;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1621,174,0
chrIV	747523	.	G	A	168.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.305;DP=74;Dels=0.00;FS=3.137;HaplotypeScore=4.9381;MLEAC=1;MLEAF=0.500;MQ=47.36;MQ0=0;MQRankSum=-1.173;QD=2.27;ReadPosRankSum=-2.039;SB=-3.810e+02	GT:AD:DP:GQ:PL	0/1:36,38:74:99:198,0,568
chrIV	747547	.	A	G	116.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.517;DP=71;Dels=0.01;FS=1.117;HaplotypeScore=13.9429;MLEAC=1;MLEAF=0.500;MQ=47.65;MQ0=0;MQRankSum=-1.578;QD=1.63;ReadPosRankSum=-3.441;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:54,15:70:99:146,0,519
chrIV	747550	.	G	A	79.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;DP=75;Dels=0.00;FS=1.160;HaplotypeScore=14.7863;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=0;MQRankSum=-1.339;QD=1.05;ReadPosRankSum=-3.270;SB=-5.601e+01	GT:AD:DP:GQ:PL	0/1:61,14:75:99:109,0,522
chrIV	747553	.	A	G	57.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908;DP=75;Dels=0.00;FS=1.247;HaplotypeScore=13.7905;MLEAC=1;MLEAF=0.500;MQ=48.39;MQ0=0;MQRankSum=-2.427;QD=0.76;ReadPosRankSum=-3.131;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:62,12:75:87:87,0,645
chrIV	747674	.	A	C	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=6.016;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.398;QD=16.43;ReadPosRankSum=2.578;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1331,144,0
chrIV	748302	.	T	C	671	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.33;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:78:704,78,0
chrIV	748728	.	T	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.37;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1422,150,0
chrIV	749895	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.04;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1201,126,0
chrIV	751130	.	A	G	1350	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.15;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1383,150,0
chrIV	751244	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.595;QD=21.12;ReadPosRankSum=1.681;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1448,156,0
chrIV	751277	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.20;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1323,141,0
chrIV	751285	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.07;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1641,177,0
chrIV	751311	.	A	G	1686	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.20;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1719,189,0
chrIV	751324	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.2191;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.78;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1758,183,0
chrIV	751384	.	C	T	1933	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.6047;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.97;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1966,204,0
chrIV	751473	.	C	T	1141	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=11.7525;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.13;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1174,129,0
chrIV	751601	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.6021;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=1.140;QD=19.38;ReadPosRankSum=1.185;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1506,165,0
chrIV	751817	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.00;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1155,126,0
chrIV	751891	.	A	G	1560	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=19.02;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1593,174,0
chrIV	751894	.	G	C	1526	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.07;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1559,168,0
chrIV	752584	.	T	A	2454	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.60;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2487,258,0
chrIV	752863	.	C	T	2425	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.25;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2458,255,0
chrIV	752892	.	G	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.83;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1877,198,0
chrIV	752908	.	A	C	1477	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=16.78;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1510,165,0
chrIV	752995	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1708,186,0
chrIV	753357	.	A	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.98;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1110,123,0
chrIV	753375	.	G	T	1067	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=25.40;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1100,114,0
chrIV	754021	.	A	G	1442	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.844;QD=18.25;ReadPosRankSum=1.643;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1475,162,0
chrIV	755101	.	T	C	1282	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.81;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1315,147,0
chrIV	755654	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.10;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1332,138,0
chrIV	755785	.	A	G	1251	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=66;Dels=0.00;FS=11.944;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.677;QD=18.95;ReadPosRankSum=2.894;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:3,63:66:99:1284,141,0
chrIV	755819	.	A	G	1076	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.64;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1109,123,0
chrIV	756842	.	T	C	1559	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=3.057;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.283;QD=21.07;ReadPosRankSum=2.317;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1592,171,0
chrIV	756915	.	C	T	1375	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.22;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1408,147,0
chrIV	757202	.	A	G	1323	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.81;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1356,147,0
chrIV	757409	.	A	T	1022	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.97;MQ0=1;MQRankSum=0.527;QD=21.74;ReadPosRankSum=0.979;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:99:1055,114,0
chrIV	757412	.	G	A	884	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=1;MQRankSum=0.315;QD=19.64;ReadPosRankSum=1.024;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:917,105,0
chrIV	757414	.	A	C	841	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.030;DP=43;Dels=0.00;FS=3.727;HaplotypeScore=4.7619;MLEAC=2;MLEAF=1.00;MQ=33.63;MQ0=1;MQRankSum=-1.211;QD=19.56;ReadPosRankSum=1.742;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:3,40:43:96:874,96,0
chrIV	757430	.	T	C	577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=2;MQRankSum=1.607;QD=11.78;ReadPosRankSum=2.345;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:69:610,69,0
chrIV	757452	.	T	C	241.64	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=6;MQRankSum=-0.466;QD=5.03;ReadPosRankSum=2.719;SB=-3.416e+02	GT:AD:DP:GQ:PL	1/1:11,37:48:11:274,11,0
chrIV	757454	.	A	G	218.19	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.295;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=6;MQRankSum=0.060;QD=4.55;ReadPosRankSum=2.689;SB=-3.374e+02	GT:AD:DP:GQ:PL	1/1:11,36:48:8:250,8,0
chrIV	757478	.	C	A	158.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.515;DP=62;Dels=0.00;FS=95.755;HaplotypeScore=7.3771;MLEAC=1;MLEAF=0.500;MQ=21.28;MQ0=16;MQRankSum=3.023;QD=2.55;ReadPosRankSum=1.383;SB=0.163	GT:AD:DP:GQ:PL	0/1:47,15:62:99:188,0,111
chrIV	757506	.	A	G	593	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.67;MQ0=26;MQRankSum=0.866;QD=7.60;ReadPosRankSum=1.666;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:69:626,69,0
chrIV	757508	.	G	A,T	524.01	filter	AC=1,1;AF=0.500,0.500;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=20.94;MQ0=26;QD=6.63;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/2:1,14,64:79:89:584,442,424,143,0,89
chrIV	757538	.	A	G	568	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=70;Dels=0.00;FS=4.260;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=20.04;MQ0=30;MQRankSum=1.386;QD=8.11;ReadPosRankSum=-1.126;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:66:601,66,0
chrIV	757544	.	C	T	199.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;DP=68;Dels=0.00;FS=13.142;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=20.02;MQ0=29;MQRankSum=-0.271;QD=2.93;ReadPosRankSum=2.327;SB=-5.007e+00	GT:AD:DP:GQ:PL	0/1:52,16:68:99:229,0,234
chrIV	757558	.	A	G	69.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.699;DP=58;Dels=0.00;FS=22.860;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=21.00;MQ0=21;MQRankSum=1.894;QD=1.19;ReadPosRankSum=-2.177;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,9:58:99:99,0,363
chrIV	757564	.	C	A	504	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.92;MQ0=20;QD=9.00;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:57:537,57,0
chrIV	757578	.	G	C	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DP=47;Dels=0.00;FS=8.158;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.73;MQ0=18;MQRankSum=1.761;QD=0.26;ReadPosRankSum=-3.262;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:42,5:47:42:42,0,268
chrIV	757602	.	C	A	53.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.444;DP=34;Dels=0.00;FS=24.123;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.66;MQ0=13;MQRankSum=1.373;QD=1.59;ReadPosRankSum=-0.387;SB=-7.747e+01	GT:AD:DP:GQ:PL	1/1:12,22:34:9:86,9,0
chrIV	757681	.	G	A	528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;DP=36;Dels=0.00;FS=27.107;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=3;MQRankSum=1.883;QD=14.67;ReadPosRankSum=1.381;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:6,30:36:43:561,43,0
chrIV	757698	.	A	G	540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=3;MQRankSum=1.509;QD=15.43;ReadPosRankSum=1.621;SB=-1.270e+02	GT:AD:DP:GQ:PL	1/1:2,33:35:66:573,66,0
chrIV	757700	.	G	A	553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=36;Dels=0.00;FS=5.863;HaplotypeScore=4.1173;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=3;MQRankSum=-1.476;QD=15.36;ReadPosRankSum=1.605;SB=-1.260e+02	GT:AD:DP:GQ:PL	1/1:1,28:36:66:586,66,0
chrIV	757730	.	A	G	739	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=1;QD=18.02;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:772,87,0
chrIV	757736	.	T	C	79.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041;DP=41;Dels=0.00;FS=11.123;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=2;MQRankSum=-0.521;QD=1.93;ReadPosRankSum=3.322;SB=-5.501e+01	GT:AD:DP:GQ:PL	0/1:28,13:41:99:109,0,462
chrIV	757750	.	A	G	177.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=41;Dels=0.00;FS=1.484;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=30.90;MQ0=2;MQRankSum=2.497;QD=4.32;ReadPosRankSum=2.975;SB=-3.701e+01	GT:AD:DP:GQ:PL	0/1:24,15:41:99:207,0,294
chrIV	757756	.	C	A	487	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=3;QD=13.16;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:57:520,57,0
chrIV	757800	.	G	C	19.06	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DP=56;Dels=0.00;FS=11.363;HaplotypeScore=9.8549;MLEAC=1;MLEAF=0.500;MQ=41.01;MQ0=3;MQRankSum=-2.122;QD=0.34;ReadPosRankSum=-3.577;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:43,10:56:49:49,0,443
chrIV	757824	.	T	C	2094	filter	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.9634;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=6;QD=15.98;SB=-1.460e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2127,228,0
chrIV	757876	.	A	T	549.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;DP=165;Dels=0.00;FS=18.773;HaplotypeScore=5.6018;MLEAC=1;MLEAF=0.500;MQ=36.70;MQ0=11;MQRankSum=-5.153;QD=3.33;ReadPosRankSum=0.196;SB=-2.650e+02	GT:AD:DP:GQ:PL	0/1:96,69:165:99:579,0,1332
chrIV	757894	.	G	A	164.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.325;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=10;MQRankSum=5.242;QD=1.25;ReadPosRankSum=0.263;SB=-5.201e+01	GT:AD:DP:GQ:PL	0/1:106,25:131:99:194,0,1263
chrIV	757913	.	G	A,T	829.01	filter	AC=1,1;AF=0.500,0.500;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9932;MLEAC=1,1;MLEAF=0.500,0.500;MQ=36.94;MQ0=8;QD=10.91;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/2:0,13,63:76:99:889,685,661,204,0,120
chrIV	757937	.	T	C	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.5238;MLEAC=1;MLEAF=0.500;MQ=23.12;MQ0=5;MQRankSum=-0.876;QD=0.73;ReadPosRankSum=0.361;SB=0.021	GT:AD:DP:GQ:PL	0/1:7,10:18:40:43,0,40
chrIV	757943	.	A	G	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;DP=9;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.34;MQ0=2;MQRankSum=0.937;QD=1.47;ReadPosRankSum=1.300;SB=0.100	GT:AD:DP:GQ:PL	0/1:5,4:9:34:43,0,34
chrIV	757949	.	T	C	43.97	filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=1;QD=5.50;SB=-2.272e+01	GT:AD:DP:GQ:PL	1/1:1,7:8:9:76,9,0
chrIV	757961	.	T	C	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=0;QD=4.46;SB=-2.280e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:6:49,6,0
chrIV	758028	.	C	A	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.299;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.34;MQ0=1;MQRankSum=1.027;QD=1.52;ReadPosRankSum=-1.936;SB=-2.876e+01	GT:AD:DP:GQ:PL	1/1:8,7:15:6:54,6,0
chrIV	758042	.	C	T	67.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;DP=24;Dels=0.00;FS=16.212;HaplotypeScore=4.3671;MLEAC=1;MLEAF=0.500;MQ=23.20;MQ0=2;MQRankSum=1.645;QD=2.80;ReadPosRankSum=2.820;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:5,19:24:12:97,0,12
chrIV	758089	.	A	T	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.3595;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=3;MQRankSum=-0.574;QD=0.42;ReadPosRankSum=1.339;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,4:25:40:40,0,113
chrIV	758096	.	A	C	120.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;DP=21;Dels=0.00;FS=27.868;HaplotypeScore=3.5709;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=3;MQRankSum=2.071;QD=5.74;ReadPosRankSum=1.327;SB=-4.467e+00	GT:AD:DP:GQ:PL	0/1:5,16:21:1:149,0,1
chrIV	758124	.	A	G	179.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.291;DP=46;Dels=0.00;FS=8.704;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=16.10;MQ0=22;MQRankSum=-1.724;QD=3.89;ReadPosRankSum=3.134;SB=-2.202e+01	GT:AD:DP:GQ:PL	1/1:12,34:46:24:212,24,0
chrIV	758126	.	G	T	151.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=43;Dels=0.00;FS=3.245;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.78;MQ0=23;MQRankSum=1.793;QD=3.51;ReadPosRankSum=1.661;SB=-1.311e+01	GT:AD:DP:GQ:PL	1/1:7,35:43:21:184,21,0
chrIV	758156	.	A	G	616	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.118;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=31;MQRankSum=0.455;QD=7.25;ReadPosRankSum=2.307;SB=-2.589e+02	GT:AD:DP:GQ:PL	1/1:5,79:85:48:649,48,0
chrIV	758182	.	C	A	877	filter	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=27;QD=10.57;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:96:910,96,0
chrIV	758219	.	A	T	498.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.634;DP=60;Dels=0.00;FS=22.630;HaplotypeScore=7.7774;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=4;MQRankSum=2.059;QD=8.30;ReadPosRankSum=0.900;SB=-3.460e+02	GT:AD:DP:GQ:PL	0/1:21,39:60:30:528,0,30
chrIV	758224	.	C	A	15.14	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;DP=47;Dels=0.00;FS=14.225;HaplotypeScore=46.3438;MLEAC=1;MLEAF=0.500;MQ=29.20;MQ0=2;MQRankSum=-1.064;QD=0.32;ReadPosRankSum=1.790;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,13:47:45:45,0,431
chrIV	758234	.	C	T	52.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=12.0313;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=2;MQRankSum=-0.580;QD=1.44;ReadPosRankSum=1.291;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:22,13:36:82:82,0,269
chrIV	758240	.	T	C	341	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=3;QD=10.33;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:42:374,42,0
chrIV	758249	.	T	C	196.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DP=33;Dels=0.00;FS=4.357;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=3;MQRankSum=0.172;QD=5.94;ReadPosRankSum=0.732;SB=-6.530e-03	GT:AD:DP:GQ:PL	0/1:12,21:33:53:226,0,53
chrIV	758253	.	G	A	219.54	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.45;MQ0=3;MQRankSum=-0.161;QD=6.86;ReadPosRankSum=1.629;SB=0.460	GT:AD:DP:GQ:PL	1/1:11,21:32:4:250,4,0
chrIV	758281	.	A	T	141.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.62;MQ0=3;MQRankSum=-0.594;QD=7.84;ReadPosRankSum=2.123;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:3,15:18:18:174,18,0
chrIV	758306	.	A	G	139.13	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=1;QD=13.91;SB=-7.359e-02	GT:AD:DP:GQ:PL	1/1:0,10:10:18:172,18,0
chrIV	758310	.	T	C	139.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=13;Dels=0.00;FS=23.424;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=1;MQRankSum=1.664;QD=10.70;ReadPosRankSum=2.404;SB=-7.359e-02	GT:AD:DP:GQ:PL	1/1:3,10:13:18:172,18,0
chrIV	758318	.	A	T	176.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=15;Dels=0.00;FS=6.021;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=22.02;MQ0=3;MQRankSum=1.448;QD=11.74;ReadPosRankSum=0.290;SB=-4.997e+01	GT:AD:DP:GQ:PL	1/1:3,12:15:24:209,24,0
chrIV	758343	.	A	G	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.24;MQ0=2;MQRankSum=0.736;QD=3.76;ReadPosRankSum=0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,2:5:6:50,6,0
chrIV	758354	.	T	C	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.24;MQ0=2;MQRankSum=0.736;QD=3.37;ReadPosRankSum=-0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,2:5:6:48,6,0
chrIV	758372	.	A	G	94.26	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.32;MQ0=2;QD=11.78;SB=-4.930e+01	GT:AD:DP:GQ:PL	1/1:0,8:8:15:127,15,0
chrIV	758374	.	C	A	97.26	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.21;MQ0=3;QD=10.81;SB=-4.830e+01	GT:AD:DP:GQ:PL	1/1:0,8:9:15:130,15,0
chrIV	758411	.	A	T	50.97	filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.02;MQ0=4;QD=6.37;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,7:8:9:83,9,0
chrIV	758426	.	C	T	46.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=5;MQRankSum=0.937;QD=3.91;ReadPosRankSum=1.754;SB=2.03	GT:AD:DP:GQ:PL	1/1:7,5:12:9:79,9,0
chrIV	758432	.	T	C	42.97	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=17.83;MQ0=5;QD=3.58;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,12:12:9:75,9,0
chrIV	758473	.	A	T	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.23;MQ0=36;QD=0.50;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:3,49:52:6:57,6,0
chrIV	758508	.	A	G	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.14;MQ0=50;MQRankSum=-1.364;QD=0.31;ReadPosRankSum=2.237;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:2,71:73:6:54,6,0
chrIV	758510	.	G	T	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.33;MQ0=51;QD=0.33;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,72:72:6:55,6,0
chrIV	758540	.	A	G	78.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.046;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=7.53;MQ0=66;MQRankSum=-0.046;QD=0.84;ReadPosRankSum=-2.083;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:6,87:93:12:111,12,0
chrIV	758566	.	C	A	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.52;MQ0=43;QD=0.39;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,61:61:6:55,6,0
chrIV	758604	.	C	A	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=7.69;MQ0=28;MQRankSum=0.348;QD=0.55;ReadPosRankSum=-1.044;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:4,34:38:6:52,6,0
chrIV	758988	.	C	A	72.51	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.97;MQ0=21;QD=1.96;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:12:105,12,0
chrIV	759002	.	T	C	83.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;DP=44;Dels=0.00;FS=2.831;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.81;MQ0=24;MQRankSum=-0.847;QD=1.89;ReadPosRankSum=2.540;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:5,39:44:11:113,0,11
chrIV	759008	.	T	C	172.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=10.58;MQ0=27;MQRankSum=-1.103;QD=3.51;ReadPosRankSum=1.576;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,48:49:24:205,24,0
chrIV	759049	.	A	T	89.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.58;MQ0=20;MQRankSum=0.540;QD=2.70;ReadPosRankSum=-0.694;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:9,24:33:30:119,0,30
chrIV	759056	.	A	C	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.10;MQ0=12;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.000;SB=-6.690e-03	GT:AD:DP:GQ:PL	0/1:9,12:21:41:65,0,41
chrIV	759074	.	A	G	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.38;MQ0=11;QD=1.32;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,18:18:6:55,6,0
chrIV	759086	.	A	T	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.60;MQ0=16;QD=0.84;SB=-1.740e+00	GT:AD:DP:GQ:PL	1/1:1,25:27:6:54,6,0
chrIV	759200	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.6198;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=9;QD=0.25;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,49:49:6:43,6,0
chrIV	759433	.	A	T	106.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.0750;MLEAC=1;MLEAF=0.500;MQ=17.66;MQ0=21;MQRankSum=0.483;QD=1.77;ReadPosRankSum=-0.054;SB=-4.808e-03	GT:AD:DP:GQ:PL	0/1:11,49:60:52:136,0,52
chrIV	759468	.	A	G	376	filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.44;MQ0=29;QD=5.70;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:1,65:66:45:409,45,0
chrIV	759470	.	G	T	384	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=33;MQRankSum=1.200;QD=5.33;ReadPosRankSum=1.377;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:1,71:72:45:417,45,0
chrIV	759494	.	C	T	59.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;DP=99;Dels=0.00;FS=7.691;HaplotypeScore=2.7510;MLEAC=1;MLEAF=0.500;MQ=20.28;MQ0=42;MQRankSum=2.300;QD=0.60;ReadPosRankSum=1.891;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:80,19:99:89:89,0,500
chrIV	759495	.	A	G	53.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726;DP=102;Dels=0.00;FS=7.691;HaplotypeScore=2.7510;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=42;MQRankSum=1.589;QD=0.52;ReadPosRankSum=1.962;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:83,19:102:83:83,0,511
chrIV	759500	.	A	G	466.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;DP=101;Dels=0.00;FS=4.885;HaplotypeScore=1.9623;MLEAC=1;MLEAF=0.500;MQ=21.09;MQ0=39;MQRankSum=-0.571;QD=4.61;ReadPosRankSum=-1.343;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,81:101:75:496,0,75
chrIV	759526	.	C	A	563	filter	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=20.60;MQ0=42;QD=5.63;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,100:100:63:596,63,0
chrIV	759564	.	C	A	1785	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=35;MQRankSum=1.290;QD=11.30;ReadPosRankSum=2.030;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:2,156:158:99:1818,197,0
chrIV	759578	.	T	C	1638.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.381;DP=201;Dels=0.00;FS=157.514;HaplotypeScore=4.9605;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=28;MQRankSum=-5.500;QD=8.15;ReadPosRankSum=-1.883;SB=-8.085e+02	GT:AD:DP:GQ:PL	1/1:40,157:201:12:1671,12,0
chrIV	759584	.	T	C	2268	filter	AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=9.5466;MLEAC=2;MLEAF=1.00;MQ=25.37;MQ0=24;QD=10.85;SB=-1.878e+03	GT:AD:DP:GQ:PL	1/1:0,209:209:99:2301,269,0
chrIV	759625	.	A	T	2398	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=6.216;DP=202;Dels=0.00;FS=99.412;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=10;MQRankSum=-0.721;QD=11.87;ReadPosRankSum=1.001;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:28,174:202:99:2431,211,0
chrIV	759660	.	A	G	975	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.973;DP=96;Dels=0.00;FS=29.491;HaplotypeScore=6.9107;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=5;MQRankSum=-1.913;QD=10.16;ReadPosRankSum=4.646;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:10,86:96:99:1008,123,0
chrIV	759662	.	G	T	851	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.05;MQ0=3;QD=10.51;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,76:81:99:884,105,0
chrIV	759686	.	T	C	397	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.563;DP=46;Dels=0.00;FS=23.234;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=5;MQRankSum=-2.167;QD=8.63;ReadPosRankSum=-2.824;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:19,27:46:51:430,51,0
chrIV	759698	.	T	C	142.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;DP=45;Dels=0.00;FS=5.926;HaplotypeScore=5.9275;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=5;MQRankSum=3.239;QD=3.16;ReadPosRankSum=-2.300;SB=-2.069e+02	GT:AD:DP:GQ:PL	0/1:10,34:45:99:172,0,99
chrIV	759714	.	A	G	826	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=5;QD=11.47;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:859,99,0
chrIV	759756	.	C	A	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;DP=75;Dels=0.00;FS=1.921;HaplotypeScore=7.6948;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=2;MQRankSum=2.544;QD=15.64;ReadPosRankSum=1.867;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:5,70:75:99:1206,129,0
chrIV	759794	.	A	T	1136	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=16.71;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1169,129,0
chrIV	759809	.	C	T	941	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=15.95;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:974,105,0
chrIV	759818	.	C	T	1007	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=15.49;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1040,114,0
chrIV	759888	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=21.07;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1466,156,0
chrIV	760206	.	G	C	1575	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.50;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1608,174,0
chrIV	760217	.	C	T	1490	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3464;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.69;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1523,165,0
chrIV	760275	.	G	C	1577	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.31;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1610,177,0
chrIV	760350	.	A	G	2222	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.84;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:2255,243,0
chrIV	760456	.	G	A	1601	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1634,171,0
chrIV	760775	.	T	C	1513	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.92;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1546,174,0
chrIV	760843	.	G	A	2615	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.35;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2648,276,0
chrIV	761335	.	T	C	1476	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.60;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1509,165,0
chrIV	761363	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.80;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1399,153,0
chrIV	761375	.	T	C	1593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.033;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.064;QD=19.67;ReadPosRankSum=1.604;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1626,174,0
chrIV	761455	.	A	G	2513	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.40;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2546,276,0
chrIV	761647	.	A	G	1697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=82;Dels=0.00;FS=3.349;HaplotypeScore=7.2372;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.256;QD=20.70;ReadPosRankSum=0.390;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,79:82:99:1730,189,0
chrIV	761715	.	C	T	2008	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.35;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2041,213,0
chrIV	762286	.	G	A	2323	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.00;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2356,249,0
chrIV	763207	.	A	G	1914	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.27;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1947,219,0
chrIV	766080	.	A	T	1875	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1908,201,0
chrIV	767007	.	C	T	2935	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.24;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,143:145:99:2968,309,0
chrIV	767117	.	T	C	1705	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.0113;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.94;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1738,183,0
chrIV	767443	.	A	G	1766	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=21.80;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1799,189,0
chrIV	768037	.	T	C	1932	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=108;Dels=0.00;FS=6.451;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.719;QD=17.89;ReadPosRankSum=1.699;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,107:108:99:1965,210,0
chrIV	768366	.	C	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=16.56;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1209,126,0
chrIV	769356	.	G	T	787	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.67;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:820,87,0
chrIV	769896	.	T	C	940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=3.802;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.011;QD=19.18;ReadPosRankSum=1.660;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:973,108,0
chrIV	770153	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=15.88;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:938,99,0
chrIV	770297	.	T	C	4644.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=13.7911;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.190;QD=25.10;ReadPosRankSum=1.713;SB=-1.735e+03	GT:AD:DP:GQ:PL	1/1:1,181:185:99:4644,504,0
chrIV	770352	.	C	T	2262	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2295,240,0
chrIV	770770	.	C	T	1607	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1640,174,0
chrIV	771070	.	A	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.99;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1596,168,0
chrIV	771211	.	T	C	2260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.057;QD=22.83;ReadPosRankSum=2.400;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:2293,252,0
chrIV	771632	.	T	A	4247.01	PASS	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.73;SB=-2.019e+03	GT:AD:DP:GQ:PL	1/1:0,178:179:99:4247,456,0
chrIV	771858	.	C	T	2082	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.46;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2115,219,0
chrIV	772698	.	A	G	2122	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.88;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2155,240,0
chrIV	773522	.	A	G	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.382;QD=20.54;ReadPosRankSum=2.376;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1409,153,0
chrIV	773646	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=23.52;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1962,207,0
chrIV	773652	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.01;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1614,171,0
chrIV	773670	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.075;QD=18.59;ReadPosRankSum=1.632;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1316,150,0
chrIV	773703	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.98;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1248,132,0
chrIV	773757	.	T	A	1560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.742;QD=22.29;ReadPosRankSum=1.683;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1593,168,0
chrIV	773893	.	G	C	1213	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.22;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1246,135,0
chrIV	774079	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.26;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1680,177,0
chrIV	774106	.	A	G	1742	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.92;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1775,192,0
chrIV	774288	.	A	C	1139	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.71;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1172,126,0
chrIV	774536	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.60;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1850,192,0
chrIV	774730	.	A	G	2292	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.62;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2325,258,0
chrIV	774849	.	T	C	2074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.802;HaplotypeScore=7.8355;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.974;QD=21.38;ReadPosRankSum=1.660;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2107,234,0
chrIV	775287	.	T	C	2147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;DP=88;Dels=0.00;FS=14.526;HaplotypeScore=8.1421;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.130;QD=24.40;ReadPosRankSum=3.355;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:4,84:88:99:2180,234,0
chrIV	775518	.	T	C	1771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.374;QD=20.36;ReadPosRankSum=1.692;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1804,198,0
chrIV	775554	.	C	T	1836	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.73;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1869,204,0
chrIV	775671	.	T	C	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.973;QD=22.80;ReadPosRankSum=1.637;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1720,189,0
chrIV	775744	.	T	C	2397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=125;Dels=0.00;FS=11.835;HaplotypeScore=7.3735;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.234;QD=19.18;ReadPosRankSum=2.912;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:3,122:125:99:2430,261,0
chrIV	775941	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.04;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1496,156,0
chrIV	775992	.	T	A	1953	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=17.92;SB=-1.463e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1986,204,0
chrIV	775997	.	A	G	1743	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=15.99;SB=-1.292e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1776,195,0
chrIV	776086	.	G	A	3233.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.206;DP=143;Dels=0.00;FS=3.041;HaplotypeScore=5.1594;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.739;QD=22.61;ReadPosRankSum=-0.618;SB=-1.893e+03	GT:AD:DP:GQ:PL	1/1:1,142:143:99:3265,342,0
chrIV	776219	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.52;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1970,213,0
chrIV	776259	.	C	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.44;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1828,192,0
chrIV	776284	.	C	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3175;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.69;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1854,201,0
chrIV	776360	.	G	T	2170	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.85;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2203,228,0
chrIV	776432	.	T	C	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=97;Dels=0.00;FS=4.122;HaplotypeScore=8.1712;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=0.987;QD=21.06;ReadPosRankSum=1.695;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,92:97:99:2076,228,0
chrIV	776627	.	A	G	1819	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.62;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1852,198,0
chrIV	776679	.	G	A	970	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.96;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1003,108,0
chrIV	776715	.	A	G	910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.308;QD=18.57;ReadPosRankSum=1.591;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:943,102,0
chrIV	776907	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.23;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1429,159,0
chrIV	777029	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.94;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1457,159,0
chrIV	777128	.	A	G	873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=3.096;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.023;QD=16.79;ReadPosRankSum=2.260;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:906,99,0
chrIV	777389	.	C	T	3041	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.0986;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.33;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:3074,327,0
chrIV	777438	.	G	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.68;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1977,213,0
chrIV	777449	.	A	C	1884	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.41;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1917,210,0
chrIV	777638	.	A	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.65;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1448,156,0
chrIV	778122	.	C	T	2842	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.08;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2875,300,0
chrIV	778190	.	T	C	2390	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4713;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.53;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2423,258,0
chrIV	778301	.	G	A	2924	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5107;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=21.34;SB=-1.685e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2957,312,0
chrIV	778415	.	C	T	2373	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=21.57;SB=-1.568e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2406,246,0
chrIV	778463	.	T	C	2072	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.67;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2105,231,0
chrIV	778694	.	G	A	1964	filter	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=19.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1997,204,0
chrIV	778709	.	C	T	1729	filter	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=20.34;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1762,180,0
chrIV	778721	.	G	A	1518	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=20.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1551,159,0
chrIV	778722	.	G	A	1439	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=19.71;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1472,156,0
chrIV	778856	.	C	A	345	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=21.56;SB=-7.475e-03	GT:AD:DP:GQ:PL	1/1:0,16:16:39:378,39,0
chrIV	778868	.	C	A	345	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=23.00;SB=-7.338e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:39:378,39,0
chrIV	778870	.	A	G	327	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=21.80;SB=-7.338e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:39:360,39,0
chrIV	779181	.	G	A	864	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.57;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:897,93,0
chrIV	779427	.	G	A	1259	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.09;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1292,138,0
chrIV	780011	.	T	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.62;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1229,135,0
chrIV	780027	.	G	A	915	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=16.64;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:948,108,0
chrIV	780200	.	T	A	3776.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=161;Dels=0.00;FS=6.160;HaplotypeScore=13.7756;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.148;QD=23.45;ReadPosRankSum=2.232;SB=-2.021e+03	GT:AD:DP:GQ:PL	1/1:2,159:161:99:3776,405,0
chrIV	780618	.	T	C	1849	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.78;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1882,210,0
chrIV	780939	.	G	T	2133	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.12;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2166,228,0
chrIV	780966	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=10.408;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=0.739;QD=19.34;ReadPosRankSum=2.392;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1677,186,0
chrIV	780987	.	C	T	1586	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.44;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1619,171,0
chrIV	781103	.	T	C	1635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=8.774;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.146;QD=21.51;ReadPosRankSum=2.385;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1668,180,0
chrIV	781421	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.7722;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.27;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1224,129,0
chrIV	781568	.	G	A	1619	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.53;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1652,171,0
chrIV	781624	.	A	G	1494	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.90;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1527,168,0
chrIV	781717	.	G	A	1495	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.31;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1528,159,0
chrIV	781887	.	A	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.20;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1326,138,0
chrIV	782410	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.22;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1709,180,0
chrIV	782863	.	T	C	2193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.018;QD=22.61;ReadPosRankSum=1.659;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,94:97:99:2226,243,0
chrIV	783163	.	C	T	1933	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.93;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,94:97:99:1966,210,0
chrIV	783285	.	T	C	1682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.120;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.953;QD=21.02;ReadPosRankSum=1.646;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1715,186,0
chrIV	783691	.	T	C	1512	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.43;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1545,168,0
chrIV	783898	.	T	C	1148	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.08;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1181,126,0
chrIV	784297	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-1.614;QD=17.18;ReadPosRankSum=2.146;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:1167,126,0
chrIV	784305	.	G	C	1162	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.74;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1195,132,0
chrIV	784508	.	A	G	1501	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.01;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1534,168,0
chrIV	784537	.	C	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.04;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1695,174,0
chrIV	784561	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.72;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1575,162,0
chrIV	785156	.	C	A	994	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.71;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1027,114,0
chrIV	785443	.	T	C	1966	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.40;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1999,216,0
chrIV	785712	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.12;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1562,174,0
chrIV	785881	.	G	A	2091	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.2609;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.56;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2124,231,0
chrIV	786028	.	C	T	1601	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.90;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1634,177,0
chrIV	786128	.	T	C	1708	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.06;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1741,186,0
chrIV	786657	.	T	C	1488	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.67;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1521,168,0
chrIV	786687	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=17.43;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1340,144,0
chrIV	786948	.	G	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.81;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1858,195,0
chrIV	787254	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=8.577;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.233;QD=16.42;ReadPosRankSum=2.386;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1297,138,0
chrIV	787523	.	C	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.50;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1563,162,0
chrIV	787605	.	G	A	1324	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.44;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1357,147,0
chrIV	787632	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.15;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1642,180,0
chrIV	787649	.	A	G	1623	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.32;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1656,180,0
chrIV	788247	.	C	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.55;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1671,177,0
chrIV	788528	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.72;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1510,165,0
chrIV	788607	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1446,159,0
chrIV	788889	.	G	A	1483	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.77;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1516,162,0
chrIV	789368	.	T	A	1791	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5985;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.83;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1824,198,0
chrIV	789392	.	C	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.93;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1448,156,0
chrIV	790182	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1044;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=16.22;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1428,150,0
chrIV	790216	.	G	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.8862;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.35;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1438,153,0
chrIV	790489	.	A	G	1022	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.04;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1055,117,0
chrIV	791482	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1159,126,0
chrIV	791869	.	C	T	1028	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=14.28;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1061,111,0
chrIV	792170	.	G	A	1297	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.43;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1330,138,0
chrIV	792334	.	C	T	3323.01	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=26.17;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3323,345,0
chrIV	792541	.	G	A	2023	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.08;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2056,225,0
chrIV	792642	.	C	G	2112	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.50;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2145,228,0
chrIV	793089	.	C	T	1288	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.67;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1321,138,0
chrIV	793254	.	T	C	1263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9885;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.462;QD=21.05;ReadPosRankSum=1.444;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1296,141,0
chrIV	793403	.	C	T	935	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.31;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:968,102,0
chrIV	793664	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.00;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1440,150,0
chrIV	793726	.	A	T	903	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:936,99,0
chrIV	793822	.	C	T	869	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=15.25;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:96:902,96,0
chrIV	794057	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.306;QD=22.19;ReadPosRankSum=1.679;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1520,165,0
chrIV	794820	.	T	C	1231	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1264,135,0
chrIV	795082	.	G	A	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=6.2669;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.312;QD=21.14;ReadPosRankSum=0.157;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1428,153,0
chrIV	795421	.	T	G	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=3.536;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.592;QD=21.32;ReadPosRankSum=1.644;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1739,192,0
chrIV	795466	.	T	C	1497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;MQRankSum=0.363;QD=17.41;ReadPosRankSum=1.652;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1530,168,0
chrIV	795469	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.99;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1580,165,0
chrIV	795537	.	C	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=16.60;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1510,168,0
chrIV	795559	.	T	C	1643	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.10;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1676,186,0
chrIV	795652	.	G	A	2543	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=18.98;SB=-1.718e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2576,270,0
chrIV	795663	.	G	A	2487	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=16.25;SB=-1.765e+03	GT:AD:DP:GQ:PL	1/1:0,153:153:99:2520,267,0
chrIV	795676	.	G	A	2128	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=15.09;SB=-1.371e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:2161,240,0
chrIV	795696	.	A	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=15.12;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:1968,204,0
chrIV	795718	.	T	C	1518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=119;Dels=0.00;FS=2.576;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;MQRankSum=0.144;QD=12.76;ReadPosRankSum=2.805;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:3,116:119:99:1551,174,0
chrIV	796580	.	A	T	948	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=14.81;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:981,105,0
chrIV	796727	.	G	C	2001	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=99;Dels=0.00;FS=3.635;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.268;QD=20.21;ReadPosRankSum=0.161;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:1,96:99:99:2034,222,0
chrIV	797010	.	G	T	1115	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=14.29;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1148,123,0
chrIV	797467	.	G	A	2769	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.33;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2802,294,0
chrIV	797669	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.4067;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.866;QD=7.65;ReadPosRankSum=1.485;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,83:86:90:691,90,0
chrIV	797670	.	C	T	689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.6180;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.417;QD=7.83;ReadPosRankSum=1.535;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:93:722,93,0
chrIV	798512	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9192;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.255;QD=22.44;ReadPosRankSum=0.102;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1559,162,0
chrIV	799304	.	A	G	1817	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6051;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.43;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1850,204,0
chrIV	799339	.	A	G	1510	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.88;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1543,165,0
chrIV	799796	.	G	A	1371	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.48;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1404,150,0
chrIV	799997	.	T	C	1855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.057;QD=24.09;ReadPosRankSum=1.687;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1888,201,0
chrIV	800015	.	T	C	1612	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.70;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1645,177,0
chrIV	800174	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.16;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1631,171,0
chrIV	800182	.	T	C	1593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.077;QD=17.70;ReadPosRankSum=1.694;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1626,180,0
chrIV	800342	.	G	A	1723	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5441;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.60;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1756,183,0
chrIV	800855	.	T	G	893	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.51;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:926,102,0
chrIV	800862	.	G	A	887	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.74;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:96:920,96,0
chrIV	801365	.	G	A	1184	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.77;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1217,132,0
chrIV	801845	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.46;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1836,192,0
chrIV	801977	.	A	G	1986	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.89;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2019,225,0
chrIV	801982	.	C	T	2027	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=16.61;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2060,216,0
chrIV	802100	.	A	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=16.22;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1282,141,0
chrIV	802112	.	A	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.07;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1444,153,0
chrIV	802553	.	A	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=18.63;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1151,129,0
chrIV	802610	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=20.05;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1136,123,0
chrIV	802620	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=20.79;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1239,129,0
chrIV	802627	.	A	C	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=63;Dels=0.00;FS=2.542;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-1.598;QD=19.22;ReadPosRankSum=2.889;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:3,60:63:99:1244,135,0
chrIV	802822	.	T	A	552	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=16.73;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:63:585,63,0
chrIV	802824	.	C	T	628	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.17;MQ0=0;QD=19.03;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:69:661,69,0
chrIV	802842	.	A	C	452	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=13.9139;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.74;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:54:485,54,0
chrIV	802863	.	C	T	80.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.084;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.028;QD=2.88;ReadPosRankSum=-2.044;SB=2.49	GT:AD:DP:GQ:PL	1/1:22,6:28:12:113,12,0
chrIV	802878	.	T	A	215.01	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.77;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:0,21:22:27:248,27,0
chrIV	802905	.	T	C	302.46	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=6.5624;MLEAC=1;MLEAF=0.500;MQ=27.69;MQ0=1;MQRankSum=2.435;QD=10.08;ReadPosRankSum=1.486;SB=-1.324e+00	GT:AD:DP:GQ:PL	0/1:5,25:30:1:331,0,1
chrIV	802914	.	A	T	270.52	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.6258;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=3;MQRankSum=2.739;QD=9.02;ReadPosRankSum=-2.816;SB=-2.739e+00	GT:AD:DP:GQ:PL	0/1:6,24:30:6:300,0,6
chrIV	802915	.	A	G	263.52	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=3;MQRankSum=2.729;QD=8.78;ReadPosRankSum=-2.809;SB=-2.072e+00	GT:AD:DP:GQ:PL	0/1:6,23:30:6:293,0,6
chrIV	805589	.	T	G	600	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=5;QD=14.63;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:5,36:41:69:633,69,0
chrIV	805615	.	G	A	1143	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=5;QD=22.86;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:5,44:50:99:1176,120,0
chrIV	805658	.	C	T	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.7961;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=1.636;QD=22.83;ReadPosRankSum=1.107;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1677,177,0
chrIV	805798	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=22.03;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1685,186,0
chrIV	805830	.	T	C	1981	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=23.03;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2014,222,0
chrIV	806027	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.61;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1496,156,0
chrIV	806048	.	C	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.48;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1558,165,0
chrIV	806142	.	G	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.62;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1435,147,0
chrIV	806233	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.54;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1541,162,0
chrIV	806292	.	G	A	825	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.30;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:858,90,0
chrIV	806407	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=57;Dels=0.04;FS=3.090;HaplotypeScore=4.8634;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.409;QD=24.14;ReadPosRankSum=1.669;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1409,150,0
chrIV	806486	.	G	C	156.06	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=2.05;SB=-8.056e+01	GT:AD:DP:GQ:PL	1/1:0,8:76:21:189,21,0
chrIV	806513	.	T	C	1008	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=10.29;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1041,108,0
chrIV	806514	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=10.79;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1090,114,0
chrIV	806528	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=11.09;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1331,147,0
chrIV	806564	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=13.36;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,117:118:99:1610,174,0
chrIV	806566	.	C	A	1617	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=13.59;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:1650,174,0
chrIV	806584	.	T	C	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;MQRankSum=-0.411;QD=13.29;ReadPosRankSum=1.703;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,117:119:99:1614,180,0
chrIV	807121	.	A	G	2222	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8831;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.22;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2255,249,0
chrIV	807222	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.85;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1442,159,0
chrIV	807409	.	T	C	1665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=3.041;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.502;QD=21.35;ReadPosRankSum=2.292;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1698,186,0
chrIV	807797	.	G	C	2271	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.26;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2304,252,0
chrIV	807916	.	T	G	1062	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=58.1459;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=15.85;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1095,117,0
chrIV	808521	.	C	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.43;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1402,147,0
chrIV	808649	.	A	G	1587	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.74;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1620,177,0
chrIV	808808	.	G	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.61;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1558,162,0
chrIV	808830	.	T	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.57;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1568,162,0
chrIV	808926	.	G	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.05;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1400,150,0
chrIV	808940	.	C	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.25;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1309,135,0
chrIV	808977	.	T	C	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.650;QD=15.53;ReadPosRankSum=1.678;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1027,111,0
chrIV	808996	.	C	G	1006	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=15.01;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1039,111,0
chrIV	809655	.	T	C	992	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.03;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1025,114,0
chrIV	809670	.	C	T	1176	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.9550;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=16.56;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1209,126,0
chrIV	810443	.	A	C	815	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.531;QD=16.63;ReadPosRankSum=2.350;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,47:49:90:848,90,0
chrIV	810702	.	C	T	751	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.81;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:81:784,81,0
chrIV	811032	.	A	G	1202	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.03;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1235,132,0
chrIV	811697	.	T	C	2084	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.65;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2117,231,0
chrIV	812947	.	C	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.42;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1101,114,0
chrIV	813568	.	G	A	2044	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.46;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2077,225,0
chrIV	815495	.	A	G	887	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.74;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:920,102,0
chrIV	815810	.	A	G	1682	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0522;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.69;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1715,192,0
chrIV	815851	.	A	G	1979	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.84;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2012,216,0
chrIV	817854	.	C	T	2131	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.20;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2164,222,0
chrIV	818363	.	C	A	678	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.95;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:75:711,75,0
chrIV	818486	.	C	T	475	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.96;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:54:508,54,0
chrIV	818791	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.15;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1039,114,0
chrIV	819242	.	A	G	2605	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.65;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2638,291,0
chrIV	819541	.	C	T	2202	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.70;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2235,234,0
chrIV	819584	.	G	A	2341	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.08;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2374,246,0
chrIV	819656	.	G	A	2060	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.64;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2093,219,0
chrIV	819998	.	A	T	1809	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.90;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1842,195,0
chrIV	820028	.	C	T	2039	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.27;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2072,216,0
chrIV	820386	.	T	C	2084	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.41;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2117,228,0
chrIV	820419	.	G	A	2387	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.63;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2420,249,0
chrIV	820472	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.4251;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.594;QD=22.15;ReadPosRankSum=1.686;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1694,186,0
chrIV	820541	.	T	G	1950	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=24.37;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1983,210,0
chrIV	820638	.	T	C	2216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.626;QD=22.61;ReadPosRankSum=1.661;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2249,240,0
chrIV	820678	.	G	A	2224	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.80;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2257,243,0
chrIV	820777	.	C	T	2267	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6112;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.01;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2300,240,0
chrIV	820879	.	C	T	2214	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=20.89;SB=-1.331e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2247,237,0
chrIV	820898	.	C	A	2158	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.27;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2191,231,0
chrIV	820921	.	G	A	2531	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.17;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2564,270,0
chrIV	821234	.	G	A	1207	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.12;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1240,132,0
chrIV	821264	.	A	T	1062	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.466;QD=20.42;ReadPosRankSum=1.666;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1095,114,0
chrIV	821309	.	G	A	987	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.74;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1020,105,0
chrIV	821327	.	T	C	914	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.45;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:947,102,0
chrIV	821485	.	T	C	956	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.04;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:989,108,0
chrIV	821498	.	T	C	880	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.33;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:913,99,0
chrIV	821555	.	A	G	580	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.71;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:66:613,66,0
chrIV	821579	.	A	G	652	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.29;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:75:685,75,0
chrIV	821605	.	C	T	780	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.00;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:813,84,0
chrIV	821822	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.09;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1193,129,0
chrIV	822190	.	G	A	1966	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.27;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1999,204,0
chrIV	822225	.	G	C	1732	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.49;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1765,192,0
chrIV	822347	.	C	T	2481	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.39;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2514,261,0
chrIV	822353	.	T	A	2399	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.23;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2432,261,0
chrIV	822554	.	T	C	2046	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.24;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2079,231,0
chrIV	822572	.	T	A	2507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=115;Dels=0.00;FS=3.409;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.152;QD=21.80;ReadPosRankSum=1.641;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2540,267,0
chrIV	822719	.	T	C	2703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-1.354;QD=22.71;ReadPosRankSum=1.674;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2736,300,0
chrIV	823181	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.62;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1188,123,0
chrIV	823188	.	A	G	1023	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.30;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1056,117,0
chrIV	823198	.	T	G	1144	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=19.07;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1177,126,0
chrIV	823234	.	T	C	1032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.000;QD=17.20;ReadPosRankSum=1.675;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1065,117,0
chrIV	824228	.	C	T	1734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=4.543;HaplotypeScore=4.2288;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-1.732;QD=23.12;ReadPosRankSum=0.796;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1767,189,0
chrIV	824938	.	A	G	1707	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.61;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1740,189,0
chrIV	825050	.	T	C	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.595;QD=22.36;ReadPosRankSum=1.276;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1732,189,0
chrIV	825422	.	T	C	2570	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.71;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2603,288,0
chrIV	825834	.	A	G	2497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=4.040;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.524;QD=22.91;ReadPosRankSum=1.541;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2530,270,0
chrIV	826019	.	A	C	1752	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.36;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1785,195,0
chrIV	826114	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.981;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.346;QD=22.92;ReadPosRankSum=1.691;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1981,216,0
chrIV	826149	.	C	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1592,171,0
chrIV	826324	.	T	C	1441	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.19;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1474,159,0
chrIV	828748	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.57;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1540,171,0
chrIV	829773	.	A	G	2358	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.68;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2391,261,0
chrIV	829775	.	A	G	2247	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.06;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2280,249,0
chrIV	829849	.	A	G	2093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=109;Dels=0.00;FS=2.787;HaplotypeScore=9.0366;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.260;QD=19.20;ReadPosRankSum=2.405;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:2,107:109:99:2126,231,0
chrIV	830274	.	A	T	2338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=3.915;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.252;QD=22.92;ReadPosRankSum=1.698;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2371,249,0
chrIV	830353	.	T	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.21;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2006,213,0
chrIV	830619	.	A	G	2227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.179;QD=23.69;ReadPosRankSum=1.695;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2260,249,0
chrIV	830754	.	A	T	2423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=24.23;ReadPosRankSum=1.697;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2456,255,0
chrIV	831279	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.2654;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.684;QD=18.26;ReadPosRankSum=1.687;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1439,156,0
chrIV	831397	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;DP=65;Dels=0.00;FS=3.438;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.920;QD=19.85;ReadPosRankSum=0.595;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1323,126,0
chrIV	831993	.	C	T	1697	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.11;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1730,186,0
chrIV	832728	.	A	T	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.750;DP=93;Dels=0.00;FS=2.442;HaplotypeScore=10.4296;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.641;QD=16.43;ReadPosRankSum=0.620;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:3,90:93:99:1561,103,0
chrIV	833173	.	G	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.85;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1939,207,0
chrIV	834469	.	C	T	2275	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.7421;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2308,237,0
chrIV	835319	.	T	C	1793	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.41;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1826,198,0
chrIV	835427	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.0680;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.22;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1145,123,0
chrIV	835715	.	C	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.37;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1711,186,0
chrIV	836028	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.87;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1203,129,0
chrIV	836099	.	C	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=18.88;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1449,150,0
chrIV	836148	.	A	G	1181	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.773;QD=17.63;ReadPosRankSum=1.679;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1214,129,0
chrIV	836356	.	A	G	2036	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.95;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2069,222,0
chrIV	836436	.	T	C	2308	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.09;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2341,255,0
chrIV	836558	.	T	G	1280	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.69;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:99:1313,141,0
chrIV	836777	.	T	A	2282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=4.586;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.551;QD=19.67;ReadPosRankSum=1.672;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2315,246,0
chrIV	836867	.	C	T	2060	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.2283;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.60;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2093,219,0
chrIV	837032	.	T	C	1114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=3.485;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.135;QD=19.21;ReadPosRankSum=1.613;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1147,126,0
chrIV	837275	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.663;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.594;QD=20.75;ReadPosRankSum=1.584;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1506,168,0
chrIV	837527	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.22;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1476,156,0
chrIV	837830	.	C	G	897	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.09;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:930,99,0
chrIV	837953	.	C	T	1004	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.93;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1037,108,0
chrIV	838114	.	T	C	484	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=14.24;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:57:517,57,0
chrIV	838119	.	G	A	435	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=13.59;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:51:468,51,0
chrIV	838168	.	A	T	518	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.27;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:57:551,57,0
chrIV	838516	.	C	T	1285	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.16;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1318,141,0
chrIV	838644	.	T	C	934	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.46;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:967,105,0
chrIV	839020	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.73;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1056,114,0
chrIV	839045	.	A	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.24;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1072,114,0
chrIV	839087	.	T	C	1136	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.21;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1169,126,0
chrIV	839141	.	G	A	1060	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=14.32;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1093,114,0
chrIV	839157	.	C	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.82;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1459,150,0
chrIV	839339	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.25;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1188,123,0
chrIV	839342	.	A	G	1067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=3.158;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=-0.924;QD=17.49;ReadPosRankSum=1.270;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1100,120,0
chrIV	839558	.	G	A	2161	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=24.28;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2194,228,0
chrIV	839672	.	A	T	1674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=8.111;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.321;QD=22.93;ReadPosRankSum=2.382;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1707,180,0
chrIV	840230	.	C	T	974	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.76;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1007,108,0
chrIV	840362	.	C	T	552	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.03;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:63:585,63,0
chrIV	840418	.	C	A	481	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=4.9651;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.86;SB=-6.545e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:54:514,54,0
chrIV	840549	.	G	C	1390	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;QD=22.79;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1423,156,0
chrIV	840697	.	T	C	1253	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.06;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1286,141,0
chrIV	841000	.	G	A	1951	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.71;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,96:99:99:1984,210,0
chrIV	841201	.	G	A	1982	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.09;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2015,219,0
chrIV	841606	.	C	A	968	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=14.67;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1001,105,0
chrIV	842028	.	C	T	906	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=4.856;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;MQRankSum=0.400;QD=17.42;ReadPosRankSum=-1.133;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:939,99,0
chrIV	842057	.	G	C	686	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=13.45;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:81:719,81,0
chrIV	842068	.	T	A	759	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=13.55;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:84:792,84,0
chrIV	842070	.	A	T	731	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=13.54;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:84:764,84,0
chrIV	842326	.	A	G	752	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=17.49;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:785,87,0
chrIV	842336	.	A	G	768	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=16.70;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:801,87,0
chrIV	842343	.	C	G	797	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=16.60;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:830,90,0
chrIV	842380	.	C	T	883	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=18.02;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:916,99,0
chrIV	842450	.	G	A	1034	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.46;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1067,114,0
chrIV	842455	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.91;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1111,120,0
chrIV	842465	.	T	C	904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=57;Dels=0.00;FS=5.987;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-1.092;QD=15.86;ReadPosRankSum=2.875;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:3,54:57:99:937,102,0
chrIV	842576	.	C	T	1113	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.87;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1146,123,0
chrIV	843125	.	G	T	1321	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.78;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1354,141,0
chrIV	843581	.	T	C	323	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=9.79;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:39:356,39,0
chrIV	843608	.	A	G	317	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=9.61;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,31:33:39:350,39,0
chrIV	843647	.	T	C	372	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.88;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:0,17:17:45:405,45,0
chrIV	843832	.	G	A	602	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=21.50;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:66:635,66,0
chrIV	843857	.	C	A	660	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=18.86;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:693,78,0
chrIV	844040	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.56;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1376,150,0
chrIV	844178	.	C	T	1223	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.73;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1256,132,0
chrIV	844368	.	C	G	1445	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.9667;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.01;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1478,165,0
chrIV	845065	.	G	A	2502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.094;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=7.6598;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.669;QD=22.54;ReadPosRankSum=1.701;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2535,261,0
chrIV	845136	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.29;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1422,150,0
chrIV	845309	.	T	A	2451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=112;Dels=0.00;FS=7.549;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.305;QD=21.88;ReadPosRankSum=2.405;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:2,110:112:99:2484,267,0
chrIV	845391	.	G	C	3480.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=23.67;SB=-1.865e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3480,372,0
chrIV	845567	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.632;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.404;QD=20.89;ReadPosRankSum=1.617;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1307,138,0
chrIV	845568	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.08;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1319,141,0
chrIV	845613	.	G	T	1242	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=16.78;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1275,141,0
chrIV	845774	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.06;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1501,165,0
chrIV	845818	.	T	G	1714	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5115;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.81;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1747,189,0
chrIV	845959	.	A	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.54;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1634,177,0
chrIV	846137	.	T	C	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.087;QD=23.28;ReadPosRankSum=1.689;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1919,210,0
chrIV	846477	.	C	T	2931	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.22;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2964,309,0
chrIV	846900	.	T	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.18;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1297,141,0
chrIV	846996	.	G	A	1370	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.10;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1403,150,0
chrIV	847005	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.36;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1400,144,0
chrIV	847053	.	A	G	1229	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.20;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1262,138,0
chrIV	847395	.	A	G	964	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.277;QD=18.90;ReadPosRankSum=1.663;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:99:997,108,0
chrIV	847524	.	T	C	759	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=15.18;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:87:792,87,0
chrIV	847527	.	T	G	766	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=15.32;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:87:799,87,0
chrIV	847587	.	G	A	830	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=16.27;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:93:863,93,0
chrIV	847796	.	T	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.32;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1551,168,0
chrIV	848136	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.08;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:938,105,0
chrIV	848887	.	C	T	2155	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.49;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2188,231,0
chrIV	848940	.	C	A	2091	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.98;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2124,222,0
chrIV	848977	.	C	G	1746	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.84;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1779,195,0
chrIV	849395	.	C	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=54.1811;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=16.17;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,60:63:99:1052,108,0
chrIV	849458	.	A	C	1120	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.03;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=16.97;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1153,126,0
chrIV	849478	.	A	G	1323	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.81;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1356,144,0
chrIV	849555	.	C	T	770	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.50;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:803,87,0
chrIV	849735	.	A	G	965	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.072;QD=18.92;ReadPosRankSum=1.660;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,47:51:99:998,108,0
chrIV	849796	.	T	C	1521	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=23.40;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1554,168,0
chrIV	850257	.	A	C	2923	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.02;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2956,324,0
chrIV	850495	.	T	C	1708	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.58;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1741,189,0
chrIV	850866	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.155;QD=20.47;ReadPosRankSum=1.680;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1384,150,0
chrIV	852873	.	G	A	2603	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.8155;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.99;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2636,282,0
chrIV	853277	.	C	T	3878.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=15.2454;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.110;QD=24.54;ReadPosRankSum=-1.177;SB=-1.799e+03	GT:AD:DP:GQ:PL	1/1:1,157:158:99:3878,406,0
chrIV	853448	.	A	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1287,141,0
chrIV	853958	.	A	G	1922	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.9679;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.332;QD=20.23;ReadPosRankSum=1.695;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,93:95:99:1955,219,0
chrIV	854786	.	A	G	2107	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.41;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2140,237,0
chrIV	855280	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1269,138,0
chrIV	855322	.	G	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.72;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1487,159,0
chrIV	855709	.	C	T	965	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.44;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:998,105,0
chrIV	857609	.	C	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=22.68;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1893,201,0
chrIV	857627	.	A	C	1932	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.00;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1965,216,0
chrIV	858952	.	A	G	1649	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.99;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1682,186,0
chrIV	860230	.	C	T	2466	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.0025;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.26;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2499,264,0
chrIV	860711	.	T	G	1446	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1479,165,0
chrIV	860764	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.1091;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.26;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1494,165,0
chrIV	861257	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.77;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1274,135,0
chrIV	862580	.	T	G	845	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.61;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:878,96,0
chrIV	863847	.	G	A	2494	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=20.11;SB=-1.432e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2527,270,0
chrIV	863856	.	G	T	2493	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3481;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.06;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2526,267,0
chrIV	864550	.	T	C	1754	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.88;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1787,195,0
chrIV	864978	.	G	A	709	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.85;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,33:34:78:742,78,0
chrIV	865291	.	C	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.93;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1661,174,0
chrIV	866436	.	T	C	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.060;QD=19.98;ReadPosRankSum=1.697;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:1,97:100:99:2031,225,0
chrIV	866723	.	G	T	1814	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.61;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1847,195,0
chrIV	866949	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=12.0682;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=16.57;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1176,129,0
chrIV	866998	.	T	C	1079	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.75;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1112,120,0
chrIV	867546	.	G	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.88;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1535,168,0
chrIV	867677	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.79;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1733,180,0
chrIV	867821	.	C	A	881	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.88;MQ0=0;QD=12.24;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:96:914,96,0
chrIV	867828	.	T	C	800	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;MQRankSum=-1.336;QD=11.43;ReadPosRankSum=1.683;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:93:833,93,0
chrIV	867831	.	A	C	854	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=12.03;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:96:887,96,0
chrIV	867837	.	A	G	885	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;QD=12.46;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:918,99,0
chrIV	867841	.	C	T	915	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=13.07;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:948,102,0
chrIV	867989	.	A	G	113.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-0.951;QD=1.64;ReadPosRankSum=3.245;SB=-5.860e+02	GT:AD:DP:GQ:PL	0/1:4,64:69:19:143,0,19
chrIV	868027	.	G	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=22.63;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1368,144,0
chrIV	868348	.	G	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.76;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1071,114,0
chrIV	868576	.	A	G	1460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.118;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.465;QD=17.59;ReadPosRankSum=1.690;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1493,165,0
chrIV	868578	.	G	A	1501	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.87;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1534,165,0
chrIV	868690	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.63;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1640,174,0
chrIV	868817	.	C	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.53;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1678,177,0
chrIV	868916	.	C	A	2008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=10.7677;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-1.327;QD=21.36;ReadPosRankSum=1.695;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2041,197,0
chrIV	869237	.	A	G	1919	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.32;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1952,210,0
chrIV	869651	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.94;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1748,183,0
chrIV	870699	.	A	T	2828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=124;Dels=0.00;FS=20.254;HaplotypeScore=20.3691;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.943;QD=22.81;ReadPosRankSum=2.943;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:3,121:124:99:2861,297,0
chrIV	884245	.	C	T	209.01	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=8.04;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:27:242,27,0
chrIV	884761	.	T	A	1838	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=26.26;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1871,195,0
chrIV	890632	.	T	C	1611	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1644,180,0
chrIV	893751	.	C	G	644	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.94;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,32:34:75:677,75,0
chrIV	894453	.	A	T	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.779;QD=17.72;ReadPosRankSum=1.689;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1468,159,0
chrIV	926737	.	C	T	772	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.83;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:805,84,0
chrIV	926855	.	G	A	568	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.23;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:63:601,63,0
chrIV	926869	.	C	A	541	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=14.24;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:60:574,60,0
chrIV	926907	.	G	C	525	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=13.46;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:60:558,60,0
chrIV	926985	.	T	C	1103	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.0856;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.81;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1136,123,0
chrIV	927028	.	G	T	814	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.42;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:90:847,90,0
chrIV	927608	.	C	A	680	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=15.11;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:713,75,0
chrIV	927628	.	C	T	834	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=14.89;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:96:867,96,0
chrIV	928579	.	C	G	125.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=69;Dels=0.00;FS=94.222;HaplotypeScore=6.6441;MLEAC=1;MLEAF=0.500;MQ=57.62;MQ0=0;MQRankSum=-1.256;QD=1.81;ReadPosRankSum=-5.338;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,20:69:99:155,0,641
chrIV	931764	.	T	C	1072	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=7.6678;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=1.562;QD=17.57;ReadPosRankSum=1.335;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:96:1105,96,0
chrIV	931770	.	C	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=19.8384;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.02;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1222,132,0
chrIV	931988	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=13.2730;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.88;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1406,150,0
chrIV	932859	.	C	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.50;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1140,120,0
chrIV	933233	.	T	G	1707	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1740,189,0
chrIV	933755	.	A	G	1394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=5.371;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.838;QD=22.48;ReadPosRankSum=1.621;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1427,153,0
chrIV	933821	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.78;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:60:99:1280,141,0
chrIV	933861	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.26;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1564,174,0
chrIV	933867	.	C	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.80;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1646,177,0
chrIV	933896	.	A	G	1753	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.07;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1786,192,0
chrIV	934007	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.86;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1610,174,0
chrIV	934175	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.05;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1444,156,0
chrIV	934184	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=22.18;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1386,147,0
chrIV	934256	.	C	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.76;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1594,168,0
chrIV	934358	.	T	C	1483	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.32;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1516,168,0
chrIV	934364	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.47;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1591,174,0
chrIV	934508	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=62;Dels=0.00;FS=3.080;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.021;QD=22.82;ReadPosRankSum=2.286;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:2,58:62:99:1448,159,0
chrIV	934903	.	T	C	2108	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.87;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2141,234,0
chrIV	934913	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.60;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1891,195,0
chrIV	935012	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.93;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1149,123,0
chrIV	935079	.	G	C	1703	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.56;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1736,189,0
chrIV	935138	.	G	A	2819	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.30;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2852,297,0
chrIV	935192	.	T	G	2268	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5496;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.14;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2301,249,0
chrIV	935384	.	C	T	1542	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.56;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1575,162,0
chrIV	935575	.	T	C	1939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.133;QD=21.08;ReadPosRankSum=1.694;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1972,216,0
chrIV	935721	.	C	T	2009	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.2285;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.37;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2042,219,0
chrIV	935988	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.66;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1451,159,0
chrIV	936158	.	C	A	1917	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.4394;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.78;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1950,207,0
chrIV	936221	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.84;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1446,159,0
chrIV	936290	.	A	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.69;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1519,159,0
chrIV	936485	.	T	A	1003	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=15.20;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1036,108,0
chrIV	936486	.	G	C	1016	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=15.16;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1049,114,0
chrIV	936499	.	T	C	864	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=13.09;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:96:897,96,0
chrIV	936518	.	T	C	811	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=13.75;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:90:844,90,0
chrIV	936546	.	T	A	547	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;MQRankSum=-0.247;QD=11.16;ReadPosRankSum=1.662;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:60:580,60,0
chrIV	936630	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8825;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.34;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1480,153,0
chrIV	936728	.	A	G	1464	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.53;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1497,165,0
chrIV	937139	.	T	C	1795	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.37;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1828,198,0
chrIV	937167	.	C	T	2059	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.67;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2092,222,0
chrIV	937331	.	G	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.28;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1130,117,0
chrIV	937517	.	C	T	1306	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.41;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1339,144,0
chrIV	937793	.	A	C	3202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=139;Dels=0.00;FS=4.618;HaplotypeScore=14.8187;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.536;QD=23.04;ReadPosRankSum=1.707;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:1,138:139:99:3235,351,0
chrIV	937875	.	T	C	2445	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.70;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2478,270,0
chrIV	938009	.	A	T	2309	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8425;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.56;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2342,240,0
chrIV	938147	.	A	G	1876	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6414;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.32;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1909,213,0
chrIV	938591	.	T	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.31;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1461,159,0
chrIV	939122	.	G	A	1439	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.14;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1472,162,0
chrIV	939749	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.61;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1249,141,0
chrIV	940972	.	G	C	1165	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=16.41;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1198,132,0
chrIV	940995	.	T	A	1133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.940;QD=15.96;ReadPosRankSum=1.683;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1166,129,0
chrIV	941039	.	A	C	1018	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.85;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1051,117,0
chrIV	941063	.	T	C	1179	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.33;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1212,132,0
chrIV	941099	.	C	T	1134	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.55;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1167,120,0
chrIV	941151	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=4.216;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.210;QD=17.97;ReadPosRankSum=1.680;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1237,132,0
chrIV	941497	.	T	G	1343	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.92;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1376,150,0
chrIV	943242	.	G	C	1293	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9095;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=18.74;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1326,144,0
chrIV	943938	.	G	A	2772	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.8137;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.18;SB=-1.551e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2805,300,0
chrIV	946223	.	G	A	1368	filter	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=7;QD=20.12;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:7,59:68:99:1401,153,0
chrIV	949789	.	T	C	1109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=53;Dels=0.00;FS=3.014;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.043;QD=20.92;ReadPosRankSum=2.354;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:2,50:53:99:1142,123,0
chrIV	949927	.	A	G	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=3.933;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-1.364;QD=21.60;ReadPosRankSum=1.659;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1048,117,0
chrIV	950587	.	G	A	2564	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4299;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.64;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2597,267,0
chrIV	952329	.	T	C	2137	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.28;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2170,240,0
chrIV	955755	.	T	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.93;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1421,147,0
chrIV	955824	.	T	C	706	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.10;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:739,81,0
chrIV	955831	.	C	T	727	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.73;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:760,81,0
chrIV	955955	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.25;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1823,201,0
chrIV	956155	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.56;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1635,168,0
chrIV	958663	.	T	A	1838	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.56;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1871,204,0
chrIV	959837	.	A	T	2020	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0391;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.04;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2053,222,0
chrIV	960058	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.79;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1560,174,0
chrIV	960101	.	A	G	1337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.370;QD=19.96;ReadPosRankSum=1.681;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1370,153,0
chrIV	960156	.	G	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.83;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1085,120,0
chrIV	960374	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.73;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1168,123,0
chrIV	961222	.	C	T	1813	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.58;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1846,192,0
chrIV	961481	.	C	T	1763	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.8711;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.49;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1796,186,0
chrIV	961848	.	G	A	2526	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.17;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2559,267,0
chrIV	962131	.	G	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.55;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1702,177,0
chrIV	962150	.	G	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.81;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1459,159,0
chrIV	962545	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.58;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1508,156,0
chrIV	963747	.	C	T	1913	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.91;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1946,204,0
chrIV	963777	.	T	C	2014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.795;QD=23.69;ReadPosRankSum=1.651;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2047,219,0
chrIV	964326	.	C	T	2928	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-1.662e+03	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2961,312,0
chrIV	965157	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1722,186,0
chrIV	965755	.	G	A	2511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.127;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.521;QD=24.14;ReadPosRankSum=-1.093;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2544,244,0
chrIV	968922	.	G	A	894	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.62;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:927,102,0
chrIV	969485	.	G	C	1055	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.91;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1088,120,0
chrIV	970113	.	A	G	1405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=6.173;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.717;QD=24.22;ReadPosRankSum=1.673;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1438,159,0
chrIV	970415	.	C	T	1940	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.3986;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.82;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1973,207,0
chrIV	971274	.	A	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1850,195,0
chrIV	974185	.	A	G	1180	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.00;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1213,132,0
chrIV	974630	.	A	G	2259	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.29;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2292,252,0
chrIV	975126	.	G	T	2573	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.82;SB=-1.494e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2606,270,0
chrIV	977058	.	C	G	958	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.55;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:991,105,0
chrIV	979069	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.95;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1454,150,0
chrIV	980423	.	G	A	2041	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2074,225,0
chrIV	987158	.	A	T	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.11;MQ0=5;MQRankSum=0.736;QD=3.47;ReadPosRankSum=-0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:6,2:8:6:59,6,0
chrIV	987159	.	T	G	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.11;MQ0=5;MQRankSum=0.736;QD=2.97;ReadPosRankSum=-0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:6,2:8:6:55,6,0
chrIV	1003824	.	C	T	2764	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.42;SB=-1.459e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2797,303,0
chrIV	1006085	.	G	A	1991	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.88;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:2024,222,0
chrIV	1008496	.	T	C	280	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=13.33;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,20:21:33:313,33,0
chrIV	1008656	.	G	T	825	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.33;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:858,90,0
chrIV	1008697	.	G	A	954	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.04;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:987,105,0
chrIV	1008843	.	G	A	2027	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.72;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2060,216,0
chrIV	1008848	.	C	T	2001	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.11;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2034,213,0
chrIV	1011936	.	A	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.14;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1217,129,0
chrIV	1011970	.	A	G	1278	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.03;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1311,138,0
chrIV	1012657	.	G	A	3555.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=16.6307;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.94;SB=-1.804e+03	GT:AD:DP:GQ:PL	1/1:0,161:162:99:3555,375,0
chrIV	1013236	.	A	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.70;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1787,192,0
chrIV	1013385	.	T	G	1059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.0039;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.127;QD=15.81;ReadPosRankSum=1.677;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:1,62:67:99:1092,120,0
chrIV	1013924	.	A	G	807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=37;Dels=0.00;FS=3.802;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.963;QD=21.81;ReadPosRankSum=1.636;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:1,35:37:93:840,93,0
chrIV	1015219	.	G	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.71;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1639,171,0
chrIV	1016050	.	T	C	643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.628;QD=19.48;ReadPosRankSum=1.628;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:75:676,75,0
chrIV	1016717	.	C	T	1318	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=15.15;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1351,144,0
chrIV	1017315	.	T	C	1935	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.50;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1968,210,0
chrIV	1017610	.	A	C	2128	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.91;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2161,237,0
chrIV	1017678	.	T	C	2473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.297;QD=24.98;ReadPosRankSum=1.697;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2506,273,0
chrIV	1018330	.	T	C	2915	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.95;SB=-1.599e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2948,321,0
chrIV	1020874	.	A	C	1521	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.0449;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.01;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1554,171,0
chrIV	1022417	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.29;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1571,171,0
chrIV	1026600	.	T	A	1761	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=23.48;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1794,186,0
chrIV	1027812	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.03;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1289,138,0
chrIV	1029122	.	A	G	1835	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.17;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1868,204,0
chrIV	1029540	.	C	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.14;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1622,168,0
chrIV	1029648	.	T	C	2150	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=91;Dels=0.00;FS=2.885;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.424;QD=23.63;ReadPosRankSum=2.340;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:2,88:91:99:2183,234,0
chrIV	1029701	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.8821;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.14;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1513,165,0
chrIV	1030251	.	C	T	2033	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2066,219,0
chrIV	1030339	.	A	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.7193;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.71;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1726,189,0
chrIV	1030683	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.335;QD=18.57;ReadPosRankSum=2.380;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1333,144,0
chrIV	1032343	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.23;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1668,177,0
chrIV	1035606	.	C	T	1626	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=19.59;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1659,174,0
chrIV	1035627	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;MQRankSum=1.039;QD=18.11;ReadPosRankSum=1.683;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1301,141,0
chrIV	1035668	.	T	C	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.203;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;MQRankSum=-1.582;QD=14.41;ReadPosRankSum=1.531;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1027,108,0
chrIV	1035697	.	A	C	961	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=15.50;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:994,108,0
chrIV	1035801	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.38;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1801,195,0
chrIV	1035891	.	C	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=18.48;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1456,156,0
chrIV	1035905	.	T	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=19.40;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1255,129,0
chrIV	1035987	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.901;QD=21.40;ReadPosRankSum=1.663;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1103,120,0
chrIV	1036063	.	A	C	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.985;QD=20.00;ReadPosRankSum=1.664;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1073,117,0
chrIV	1036126	.	C	G	1349	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.48;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1382,147,0
chrIV	1036179	.	A	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.09;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1623,177,0
chrIV	1036257	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.78;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1101,117,0
chrIV	1036312	.	C	T	1045	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.35;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1078,114,0
chrIV	1036351	.	G	A	700	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=15.91;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:75:733,75,0
chrIV	1036384	.	C	T	909	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.34;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:942,99,0
chrIV	1036426	.	C	T	974	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.48;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1007,105,0
chrIV	1036669	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.40;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1137,126,0
chrIV	1036886	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.5039;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.72;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1325,138,0
chrIV	1037080	.	G	A	960	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.87;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:993,105,0
chrIV	1037205	.	T	C	950	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=3.522;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.655;QD=21.11;ReadPosRankSum=1.655;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:983,108,0
chrIV	1037262	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.18;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1192,129,0
chrIV	1037347	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.130;QD=22.87;ReadPosRankSum=1.682;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1611,174,0
chrIV	1037511	.	G	A	1369	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.74;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1402,150,0
chrIV	1037652	.	C	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.69;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1553,159,0
chrIV	1037710	.	G	A	1950	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.21;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1983,204,0
chrIV	1037923	.	G	A	1634	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1667,180,0
chrIV	1037990	.	C	T	1267	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.77;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1300,135,0
chrIV	1038058	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.00;FS=5.408;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.420;QD=20.78;ReadPosRankSum=1.680;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:1,65:68:99:1446,153,0
chrIV	1038059	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.01;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1441,153,0
chrIV	1038316	.	A	G	2036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=8.081;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=1.116;QD=22.62;ReadPosRankSum=1.694;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2069,228,0
chrIV	1038405	.	T	C	1691	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5585;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.55;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1724,189,0
chrIV	1038463	.	G	A	2299	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.53;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2332,252,0
chrIV	1038620	.	C	T	2382	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4641;MLEAC=2;MLEAF=1.00;MQ=60.74;MQ0=0;QD=20.71;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2415,249,0
chrIV	1038866	.	T	A	2770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=4.061;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.578;QD=20.37;ReadPosRankSum=1.681;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:1,135:136:99:2803,291,0
chrIV	1039385	.	A	G	2108	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=5.022;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.370;QD=23.42;ReadPosRankSum=1.693;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:2141,240,0
chrIV	1039696	.	G	A	2701	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2734,288,0
chrIV	1040939	.	A	G	2691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.259;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.449;QD=24.69;ReadPosRankSum=1.668;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2724,297,0
chrIV	1044571	.	G	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.44;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1748,183,0
chrIV	1044635	.	C	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.68;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1489,156,0
chrIV	1044663	.	G	A	1036	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.72;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1069,114,0
chrIV	1045331	.	A	G	2736	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2497;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2769,297,0
chrIV	1046726	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.19;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1409,147,0
chrIV	1047046	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.53;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1374,144,0
chrIV	1047131	.	C	T	1234	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.92;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1267,141,0
chrIV	1049568	.	G	C	1225	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.4355;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1258,138,0
chrIV	1051307	.	T	C	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.513;QD=20.34;ReadPosRankSum=1.601;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1640,183,0
chrIV	1051340	.	C	T	935	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=16.40;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:968,105,0
chrIV	1051341	.	C	A	864	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=16.30;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:897,99,0
chrIV	1051356	.	T	C	683	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=11.98;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:81:716,81,0
chrIV	1051370	.	G	A	852	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=12.72;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:93:885,93,0
chrIV	1051452	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.20;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1432,156,0
chrIV	1051506	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.210;QD=19.47;ReadPosRankSum=1.627;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1318,144,0
chrIV	1051775	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.12;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1680,174,0
chrIV	1051797	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.093;QD=20.37;ReadPosRankSum=1.679;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1357,144,0
chrIV	1052196	.	A	T	1346	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.71;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1379,147,0
chrIV	1052308	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.21;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1495,153,0
chrIV	1052765	.	C	T	1572	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1605,165,0
chrIV	1052996	.	T	C	1039	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.65;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1072,114,0
chrIV	1053054	.	A	C	1015	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.07;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1048,117,0
chrIV	1053228	.	C	T	1886	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.57;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1919,201,0
chrIV	1053286	.	C	T	1834	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.45;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1867,198,0
chrIV	1053397	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.48;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1364,141,0
chrIV	1053528	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.36;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1738,177,0
chrIV	1053747	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=3.069;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.162;QD=21.47;ReadPosRankSum=1.686;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1665,177,0
chrIV	1053796	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.76;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1881,195,0
chrIV	1053820	.	C	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.53;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1798,186,0
chrIV	1053946	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=11.1814;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.54;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1516,159,0
chrIV	1054023	.	T	C	1808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.110;QD=22.89;ReadPosRankSum=1.688;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1841,195,0
chrIV	1054225	.	A	G	2065	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.94;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2098,231,0
chrIV	1054452	.	G	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.3470;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.26;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,72:76:99:1649,180,0
chrIV	1054523	.	A	G	1382	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.74;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1415,153,0
chrIV	1054527	.	T	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=21.00;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1440,156,0
chrIV	1054662	.	A	C	1658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.169;DP=79;Dels=0.00;FS=2.816;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.765;QD=20.99;ReadPosRankSum=2.388;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1691,183,0
chrIV	1054717	.	T	C	1096	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=3.085;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=0.323;QD=17.97;ReadPosRankSum=1.674;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1129,123,0
chrIV	1055184	.	G	A	1923	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0698;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.45;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1956,204,0
chrIV	1055277	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.27;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1406,147,0
chrIV	1055412	.	A	G	1986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.279;DP=90;Dels=0.00;FS=2.453;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.225;QD=22.07;ReadPosRankSum=3.358;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:4,86:90:99:2019,216,0
chrIV	1055562	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.78;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2106,219,0
chrIV	1055660	.	C	A	696	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.40;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:729,78,0
chrIV	1055678	.	T	C	636	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=13.83;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:75:669,75,0
chrIV	1055826	.	T	G	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=69;Dels=0.00;FS=12.143;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.985;QD=19.72;ReadPosRankSum=2.895;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:3,64:69:99:1394,156,0
chrIV	1055934	.	A	G	2391	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.7998;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.39;SB=-1.381e+03	GT:AD:DP:GQ:PL	1/1:0,127:130:99:2424,267,0
chrIV	1055999	.	A	C	2315	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.64;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2348,261,0
chrIV	1056028	.	G	C	1406	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.68;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1439,159,0
chrIV	1056052	.	A	G	844	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=3.768;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;MQRankSum=-0.416;QD=16.88;ReadPosRankSum=1.455;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:877,99,0
chrIV	1056091	.	G	A	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.414;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;MQRankSum=0.161;QD=0.50;ReadPosRankSum=2.557;SB=-5.438e+02	GT:AD:DP:GQ:PL	1/1:4,46:50:6:56,6,0
chrIV	1056097	.	A	G	373.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;DP=55;Dels=0.00;FS=3.054;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=42.36;MQ0=0;MQRankSum=2.316;QD=6.80;ReadPosRankSum=1.776;SB=-6.868e+02	GT:AD:DP:GQ:PL	0/1:2,53:55:0:402,0,0
chrIV	1056116	.	T	C	518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=-0.478;QD=8.93;ReadPosRankSum=1.613;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:60:551,60,0
chrIV	1056128	.	T	C	447	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=7.21;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:54:480,54,0
chrIV	1056271	.	T	C	1117	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=14.89;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1150,123,0
chrIV	1056272	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=14.89;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1165,126,0
chrIV	1056299	.	C	A	1383	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=16.66;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1416,147,0
chrIV	1056324	.	C	T	1549	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=18.89;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1582,165,0
chrIV	1056448	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.79;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1499,165,0
chrIV	1056605	.	C	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.53;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1429,162,0
chrIV	1056784	.	G	A	1124	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.6906;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.03;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1157,120,0
chrIV	1057517	.	G	A	2423	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=23.08;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2456,255,0
chrIV	1057540	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.04;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1596,165,0
chrIV	1057573	.	T	C	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.994;QD=22.79;ReadPosRankSum=1.675;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1423,156,0
chrIV	1057601	.	C	T	1026	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=20.94;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1059,111,0
chrIV	1057799	.	T	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.21;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1654,180,0
chrIV	1057818	.	T	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.88;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1620,168,0
chrIV	1057947	.	A	G	830	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.43;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,35:37:96:863,96,0
chrIV	1058083	.	A	G	643	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,29:30:72:676,72,0
chrIV	1058179	.	A	G	903	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.41;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:936,102,0
chrIV	1058218	.	T	C	1194	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.40;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1227,135,0
chrIV	1058864	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.91;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1627,171,0
chrIV	1059154	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.71;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1350,147,0
chrIV	1059207	.	T	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.51;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1560,165,0
chrIV	1059253	.	T	A	814	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=15.07;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:847,96,0
chrIV	1059261	.	A	C	862	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=52;Dels=0.00;FS=3.093;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-1.906;QD=16.58;ReadPosRankSum=2.302;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:2,48:52:99:895,99,0
chrIV	1059313	.	A	G	909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-0.533;QD=17.15;ReadPosRankSum=1.666;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:942,102,0
chrIV	1059324	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=0.793;QD=17.83;ReadPosRankSum=1.674;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1085,117,0
chrIV	1059380	.	C	A	786	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=14.04;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:87:819,87,0
chrIV	1059381	.	T	C	732	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=13.07;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:765,84,0
chrIV	1059396	.	G	T	936	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=15.10;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:969,99,0
chrIV	1059445	.	A	T	991	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=15.02;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1024,108,0
chrIV	1059534	.	T	A	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=1.582;QD=22.52;ReadPosRankSum=1.632;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1587,171,0
chrIV	1059598	.	T	C	1434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=0.483;QD=20.78;ReadPosRankSum=0.733;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1467,159,0
chrIV	1059600	.	T	A	1556	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=22.55;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1589,162,0
chrIV	1059662	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.52;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1504,159,0
chrIV	1059907	.	T	C	1565	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=17.99;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1598,171,0
chrIV	1059932	.	A	G	51.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.684;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=0;MQRankSum=-0.646;QD=0.53;ReadPosRankSum=-3.399;SB=-2.890e+02	GT:AD:DP:GQ:PL	0/1:63,34:97:81:81,0,893
chrIV	1060010	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=19.19;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,54:58:99:1146,126,0
chrIV	1060244	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.20;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1698,177,0
chrIV	1060655	.	C	T	963	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:99:996,108,0
chrIV	1061165	.	T	A	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.705;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.027;QD=19.95;ReadPosRankSum=1.572;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1330,141,0
chrIV	1061318	.	C	T	2009	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.84;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2042,213,0
chrIV	1061346	.	A	T	1192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=-0.770;QD=16.56;ReadPosRankSum=1.588;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1225,132,0
chrIV	1061357	.	T	C	1253	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=17.65;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1286,141,0
chrIV	1061386	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.42;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1562,171,0
chrIV	1061634	.	T	C	2023	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.25;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2056,222,0
chrIV	1061721	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.00;FS=5.891;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.577;QD=21.04;ReadPosRankSum=1.627;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:1,65:68:99:1464,159,0
chrIV	1062037	.	C	T	2055	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.62;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2088,219,0
chrIV	1062818	.	G	A	3560.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.71;SB=-1.855e+03	GT:AD:DP:GQ:PL	1/1:0,163:164:99:3560,370,0
chrIV	1062952	.	C	T	2578	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.30;SB=-1.558e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2611,282,0
chrIV	1063008	.	G	A	3276.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.48;SB=-1.843e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:3276,357,0
chrIV	1063031	.	C	G	3456.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.47;SB=-1.947e+03	GT:AD:DP:GQ:PL	1/1:0,158:161:99:3456,381,0
chrIV	1063052	.	T	C	2793	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=8.2206;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.81;SB=-1.386e+03	GT:AD:DP:GQ:PL	1/1:0,139:141:99:2826,309,0
chrIV	1063134	.	T	A	2784	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=24.86;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2817,294,0
chrIV	1063171	.	C	T	2606	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.54;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2639,273,0
chrIV	1063173	.	C	T	2489	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=20.74;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2522,270,0
chrIV	1064173	.	C	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.81;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1533,168,0
chrIV	1064285	.	G	A	2372	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.4698;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.76;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2405,252,0
chrIV	1064335	.	C	T	2725	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.6083;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.29;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2758,291,0
chrIV	1064491	.	G	A	2646	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.69;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2679,279,0
chrIV	1064800	.	A	G	2012	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0633;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.12;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2045,228,0
chrIV	1065037	.	T	C	2147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=117;Dels=0.00;FS=9.245;HaplotypeScore=9.0609;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.845;QD=18.35;ReadPosRankSum=2.407;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:2,113:117:99:2180,243,0
chrIV	1065082	.	G	T	2576	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.2160;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.11;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2609,279,0
chrIV	1066159	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.87;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1513,168,0
chrIV	1066189	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=18.49;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1309,141,0
chrIV	1066190	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.11;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1390,144,0
chrIV	1066372	.	C	T	1786	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.84;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1819,192,0
chrIV	1066786	.	G	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.52;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1572,165,0
chrIV	1066840	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.54;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1342,147,0
chrIV	1066924	.	C	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.10;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1198,126,0
chrIV	1066939	.	T	C	1350	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.019;QD=19.85;ReadPosRankSum=1.681;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1383,153,0
chrIV	1067011	.	G	A	1486	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7510;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.55;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1519,168,0
chrIV	1067053	.	G	A	2039	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.9603;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.41;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2072,216,0
chrIV	1067642	.	G	A	2157	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.95;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2190,231,0
chrIV	1067784	.	C	T	2569	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.8659;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.54;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2602,273,0
chrIV	1068460	.	G	A	612	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.50;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:69:645,69,0
chrIV	1068605	.	T	C	713	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.77;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,29:30:81:746,81,0
chrIV	1068819	.	T	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.60;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1386,144,0
chrIV	1069035	.	A	G	1428	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.04;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1461,159,0
chrIV	1069089	.	A	G	2271	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.49;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2304,258,0
chrIV	1069377	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1704,183,0
chrIV	1069872	.	T	A	1616	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.55;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1649,171,0
chrIV	1069993	.	A	G	1916	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.663;HaplotypeScore=4.6744;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.201;QD=21.77;ReadPosRankSum=1.692;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1949,213,0
chrIV	1070130	.	A	G	1611	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.77;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1644,183,0
chrIV	1070142	.	A	G	1586	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.638;QD=20.87;ReadPosRankSum=1.641;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1619,174,0
chrIV	1070601	.	A	G	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.231;QD=22.20;ReadPosRankSum=1.655;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2031,222,0
chrIV	1071404	.	G	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.21;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1762,189,0
chrIV	1071558	.	A	G	1131	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.18;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1164,129,0
chrIV	1071679	.	G	C	878	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.29;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:911,99,0
chrIV	1072450	.	G	C	2047	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.89;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2080,234,0
chrIV	1072489	.	T	C	1631	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7278;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.18;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1664,180,0
chrIV	1072765	.	C	T	3087	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.39;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:3120,330,0
chrIV	1072815	.	T	C	1961	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=23.35;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1994,219,0
chrIV	1072962	.	G	C	1822	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.44;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1855,204,0
chrIV	1073154	.	A	G	1659	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.28;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1692,183,0
chrIV	1073172	.	C	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.56;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1676,177,0
chrIV	1073479	.	T	C	1844	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.5141;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.49;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1877,201,0
chrIV	1073588	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.90;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1680,180,0
chrIV	1073617	.	A	G	1470	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=16.52;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1503,162,0
chrIV	1073642	.	A	G	1305	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9097;MLEAC=2;MLEAF=1.00;MQ=37.05;MQ0=0;QD=15.72;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1338,144,0
chrIV	1073647	.	A	G	1128	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;MQRankSum=-0.276;QD=12.82;ReadPosRankSum=1.299;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1161,126,0
chrIV	1073650	.	T	A	1162	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=93;Dels=0.00;FS=2.442;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.65;MQ0=0;MQRankSum=-1.403;QD=12.49;ReadPosRankSum=2.903;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:3,90:93:99:1195,123,0
chrIV	1073654	.	T	C	1289	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.635;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;MQRankSum=1.446;QD=13.29;ReadPosRankSum=1.661;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1322,141,0
chrIV	1073936	.	G	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.50;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1749,186,0
chrIV	1074407	.	C	T	1314	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=21.19;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1347,144,0
chrIV	1074437	.	T	C	1203	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=21.11;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1236,135,0
chrIV	1074500	.	A	G	1042	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=16.81;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1075,117,0
chrIV	1074515	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.239;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=0.828;QD=16.12;ReadPosRankSum=1.582;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1145,126,0
chrIV	1074527	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.44;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1365,144,0
chrIV	1074638	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=70;Dels=0.00;FS=8.376;HaplotypeScore=7.8051;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.264;QD=21.97;ReadPosRankSum=2.380;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1571,171,0
chrIV	1074698	.	T	C	1316	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.57;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1349,144,0
chrIV	1074737	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.29;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1496,165,0
chrIV	1074754	.	C	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.77;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1703,183,0
chrIV	1074776	.	T	G	1992	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.92;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2025,225,0
chrIV	1074842	.	T	C	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.252;QD=24.34;ReadPosRankSum=2.361;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:2053,222,0
chrIV	1074890	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.21;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1378,150,0
chrIV	1074897	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.36;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1428,153,0
chrIV	1074927	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.16;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1395,153,0
chrIV	1075079	.	C	T	2311	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.11;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2344,246,0
chrIV	1075290	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=22.72;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1328,147,0
chrIV	1075328	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.26;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1285,135,0
chrIV	1075347	.	A	G	1397	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=16.44;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,82:85:99:1430,153,0
chrIV	1075360	.	A	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.70;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1770,192,0
chrIV	1075419	.	A	G	3140	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.07;SB=-1.899e+03	GT:AD:DP:GQ:PL	1/1:0,148:149:99:3173,348,0
chrIV	1075428	.	G	A	2989	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.8725;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.35;SB=-1.811e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3022,330,0
chrIV	1075561	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=19.02;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1269,132,0
chrIV	1075570	.	T	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=18.76;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1065,117,0
chrIV	1075592	.	T	A	817	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=16.67;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:850,90,0
chrIV	1075606	.	G	A	736	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=14.43;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:81:769,81,0
chrIV	1075626	.	A	G	601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=52;Dels=0.00;FS=6.454;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;MQRankSum=-1.023;QD=11.56;ReadPosRankSum=2.355;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:69:634,69,0
chrIV	1075642	.	A	C	440	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=10.23;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:51:473,51,0
chrIV	1075710	.	G	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.3137;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=15.60;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1624,174,0
chrIV	1075724	.	T	C	1908	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=15.39;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:1941,207,0
chrIV	1075739	.	T	C	2124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=1.651;QD=16.59;ReadPosRankSum=0.893;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,127:128:99:2157,234,0
chrIV	1075812	.	G	A	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=18.5024;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=1.254;QD=20.48;ReadPosRankSum=-0.100;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1897,201,0
chrIV	1075857	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.73;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1318,147,0
chrIV	1075858	.	A	G	1319	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.36;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1352,150,0
chrIV	1075948	.	G	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.83;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1403,153,0
chrIV	1076035	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=24.97;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1581,168,0
chrIV	1076423	.	G	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.56;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1441,150,0
chrIV	1076425	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.46;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1399,150,0
chrIV	1076910	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.5510;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.77;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1923,204,0
chrIV	1077082	.	A	G	2451	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=22.69;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2484,270,0
chrIV	1077398	.	T	C	2223	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=16.35;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2256,249,0
chrIV	1077427	.	T	G	2436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;DP=174;Dels=0.00;FS=7.946;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-0.162;QD=14.00;ReadPosRankSum=2.407;SB=-1.851e+03	GT:AD:DP:GQ:PL	1/1:2,172:174:99:2469,273,0
chrIV	1077428	.	C	T	2612	PASS	AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=14.84;SB=-1.963e+03	GT:AD:DP:GQ:PL	1/1:0,176:176:99:2645,273,0
chrIV	1077453	.	T	C	2360	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=14.05;SB=-2.221e+03	GT:AD:DP:GQ:PL	1/1:0,168:168:99:2393,255,0
chrIV	1077466	.	G	A	2532	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=14.81;SB=-2.039e+03	GT:AD:DP:GQ:PL	1/1:0,171:171:99:2565,267,0
chrIV	1077851	.	T	C	1703	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.29;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1736,189,0
chrIV	1077991	.	G	C	2377	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.04;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,110:113:99:2410,261,0
chrIV	1077994	.	C	T	2562	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=22.09;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2595,273,0
chrIV	1078009	.	T	C	2601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=0.277;QD=21.86;ReadPosRankSum=1.674;SB=-1.337e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2634,285,0
chrIV	1078458	.	A	G	3516.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.8146;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.495;QD=22.68;ReadPosRankSum=1.687;SB=-1.941e+03	GT:AD:DP:GQ:PL	1/1:1,153:155:99:3516,372,0
chrIV	1078734	.	T	A	3209	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=23.77;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3242,336,0
chrIV	1078766	.	T	C	3454.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=22.58;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,151:152:99:3454,366,0
chrIV	1078767	.	T	C	3431.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.72;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3431,366,0
chrIV	1078855	.	T	G	2220	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.4884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2253,246,0
chrIV	1079189	.	G	A	1768	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.22;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1801,189,0
chrIV	1079222	.	G	A	1409	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.42;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1442,153,0
chrIV	1079273	.	C	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.05;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1452,150,0
chrIV	1079792	.	T	C	1845	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1878,207,0
chrIV	1079855	.	A	G	2122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.6358;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.890;QD=19.47;ReadPosRankSum=1.667;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2155,237,0
chrIV	1080515	.	G	A	459	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=11.77;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:54:492,54,0
chrIV	1080869	.	T	G	451	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.48;SB=-2.570e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:51:484,51,0
chrIV	1081043	.	G	C	866	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=16.04;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:899,96,0
chrIV	1081972	.	C	T	989	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=17.35;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1022,108,0
chrIV	1081973	.	C	T	1036	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.50;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1069,111,0
chrIV	1081977	.	G	A	974	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=16.79;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1007,108,0
chrIV	1082074	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.4260;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.46;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1447,159,0
chrIV	1082202	.	C	T	1629	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.16;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1662,177,0
chrIV	1082232	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=2.962;HaplotypeScore=4.9268;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.089;QD=19.81;ReadPosRankSum=2.379;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1400,150,0
chrIV	1082379	.	A	G	1505	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.29;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1538,171,0
chrIV	1082404	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=18.03;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1295,141,0
chrIV	1082474	.	T	G	1745	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.523;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.610;QD=20.53;ReadPosRankSum=1.651;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1778,198,0
chrIV	1082736	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.25;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1882,201,0
chrIV	1082751	.	C	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=22.45;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1672,177,0
chrIV	1082766	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.94;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1145,123,0
chrIV	1083088	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=22.57;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1455,159,0
chrIV	1083112	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=23.54;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1634,177,0
chrIV	1083131	.	C	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=23.92;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1612,168,0
chrIV	1083252	.	A	G	1332	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.59;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1365,150,0
chrIV	1083596	.	A	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.71;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1408,150,0
chrIV	1083624	.	G	A	886	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.08;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:919,99,0
chrIV	1083977	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.70;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1400,153,0
chrIV	1084110	.	T	C	1871	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7924;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.54;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1904,201,0
chrIV	1084496	.	C	T	3306.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0982;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.28;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3306,354,0
chrIV	1084864	.	G	C	2262	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.32;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2295,249,0
chrIV	1085100	.	T	G	1133	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.12;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1166,132,0
chrIV	1085196	.	T	C	1048	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.76;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1081,117,0
chrIV	1085571	.	C	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.38;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1197,132,0
chrIV	1086024	.	G	A	1964	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.86;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1997,210,0
chrIV	1086102	.	C	T	1701	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.65;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1734,183,0
chrIV	1086246	.	A	T	2604	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.88;SB=-1.555e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2637,285,0
chrIV	1086315	.	T	C	2190	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.566;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.432;QD=21.06;ReadPosRankSum=-0.533;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2223,226,0
chrIV	1086492	.	C	T	1811	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2045;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.56;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1844,198,0
chrIV	1086747	.	A	G	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=7.811;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;MQRankSum=0.084;QD=16.19;ReadPosRankSum=2.382;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1215,132,0
chrIV	1086753	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=17.59;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1370,144,0
chrIV	1086771	.	G	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3976;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.21;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1762,183,0
chrIV	1086807	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.21;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1702,183,0
chrIV	1087218	.	T	C	1108	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=4.445;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=0.433;QD=17.31;ReadPosRankSum=1.678;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1141,123,0
chrIV	1087263	.	T	C	1250	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=17.36;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1283,138,0
chrIV	1087264	.	G	A	1313	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=18.24;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1346,138,0
chrIV	1087266	.	G	A	1270	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=17.89;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1303,138,0
chrIV	1087267	.	G	A	1306	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=18.39;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1339,138,0
chrIV	1087307	.	T	C	991	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=14.36;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1024,114,0
chrIV	1087373	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.565;QD=19.62;ReadPosRankSum=1.690;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1681,183,0
chrIV	1087871	.	G	A	1565	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.15;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1598,165,0
chrIV	1087925	.	A	T	1128	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9584;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=2;MQRankSum=-0.770;QD=12.40;ReadPosRankSum=2.338;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1161,123,0
chrIV	1087970	.	A	G	865	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=2;QD=11.09;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:898,99,0
chrIV	1088411	.	A	G	769	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=18.31;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:802,87,0
chrIV	1088690	.	A	G	2343	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.19;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2376,255,0
chrIV	1088723	.	A	G	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.561;QD=22.17;ReadPosRankSum=1.647;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1829,198,0
chrIV	1088912	.	G	A	1181	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7866;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.155;QD=19.68;ReadPosRankSum=-0.924;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1214,129,0
chrIV	1089207	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.0667;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=24.73;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1245,138,0
chrIV	1089304	.	C	T	881	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=24.47;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:96:914,96,0
chrIV	1089390	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.28;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1320,138,0
chrIV	1089433	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.210;QD=20.99;ReadPosRankSum=1.685;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1565,171,0
chrIV	1089625	.	T	C	822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=3.345;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;MQRankSum=0.128;QD=14.95;ReadPosRankSum=1.668;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:93:855,93,0
chrIV	1089633	.	C	T	874	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=15.33;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:96:907,96,0
chrIV	1089672	.	G	A	905	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=19.67;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:938,99,0
chrIV	1090085	.	T	C	762	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=14.11;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:795,87,0
chrIV	1090107	.	C	G	601	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=130.1950;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;QD=9.25;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:69:634,69,0
chrIV	1090133	.	G	A	52.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.832;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=10.3036;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;MQRankSum=-1.479;QD=0.90;ReadPosRankSum=2.185;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:3,54:58:9:85,9,0
chrIV	1090145	.	A	G	422	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=7.28;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:51:455,51,0
chrIV	1090269	.	C	T	1243	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.42;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1276,132,0
chrIV	1090306	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.89;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1485,159,0
chrIV	1090578	.	G	A	1336	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.55;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1369,150,0
chrIV	1090692	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.52;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1777,189,0
chrIV	1090877	.	G	A	2197	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.62;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2230,240,0
chrIV	1091087	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.29;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1441,159,0
chrIV	1091102	.	A	G	1524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-1.327;QD=19.79;ReadPosRankSum=1.687;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1557,171,0
chrIV	1091213	.	T	A	3285.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=146;Dels=0.00;FS=7.202;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.019;QD=22.50;ReadPosRankSum=2.349;SB=-1.691e+03	GT:AD:DP:GQ:PL	1/1:2,144:146:99:3285,345,0
chrIV	1091480	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.0197;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.47;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1965,204,0
chrIV	1091512	.	C	T	1522	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.79;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1555,162,0
chrIV	1091522	.	C	T	1509	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.75;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1542,165,0
chrIV	1091591	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.9139;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.294;QD=19.84;ReadPosRankSum=1.692;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1759,192,0
chrIV	1091642	.	T	C	1681	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.50;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1714,186,0
chrIV	1091750	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.29;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1651,171,0
chrIV	1092174	.	C	T	2396	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.20;SB=-1.483e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2429,252,0
chrIV	1092548	.	C	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1636,171,0
chrIV	1095022	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.554;QD=19.88;ReadPosRankSum=1.594;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,49:52:99:1067,117,0
chrIV	1095230	.	T	G	1958	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2717;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.77;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1991,219,0
chrIV	1095542	.	T	G	1733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;MQRankSum=0.755;QD=22.22;ReadPosRankSum=1.688;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1766,192,0
chrIV	1101687	.	T	A	141.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=13;Dels=0.00;FS=20.792;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=2;MQRankSum=2.166;QD=10.85;ReadPosRankSum=2.166;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:6,7:13:21:174,21,0
chrIV	1101694	.	A	T	153.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.981;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=0;MQRankSum=-0.586;QD=5.12;ReadPosRankSum=3.899;SB=-5.203e-01	GT:AD:DP:GQ:PL	0/1:22,7:30:6:183,0,6
chrIV	1101699	.	C	A	139.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.768;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=34.53;MQ0=0;MQRankSum=-1.022;QD=3.97;ReadPosRankSum=-3.620;SB=-9.959e-03	GT:AD:DP:GQ:PL	0/1:27,7:35:28:169,0,28
chrIV	1102257	.	T	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.27;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1243,138,0
chrIV	1102674	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.39;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1802,201,0
chrIV	1102795	.	T	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.20;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1144,123,0
chrIV	1102947	.	C	T	2385	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.68;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2418,255,0
chrIV	1103480	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.92;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2137,225,0
chrIV	1103531	.	A	G	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=5.8141;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.100;QD=21.63;ReadPosRankSum=1.692;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1915,210,0
chrIV	1103737	.	C	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=26.32;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1770,183,0
chrIV	1104014	.	G	A	2009	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.64;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2042,213,0
chrIV	1104203	.	T	C	877	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:910,96,0
chrIV	1104401	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.24;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2101,219,0
chrIV	1104446	.	G	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.86;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1503,165,0
chrIV	1104470	.	C	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.07;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1257,132,0
chrIV	1104782	.	A	G	2404	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.09;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2437,261,0
chrIV	1104914	.	A	G	2605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=120;Dels=0.00;FS=3.310;HaplotypeScore=4.4682;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.606;QD=21.71;ReadPosRankSum=1.703;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2638,285,0
chrIV	1104929	.	C	T	2600	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=23.64;SB=-1.444e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2633,273,0
chrIV	1104966	.	T	G	2214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.632;QD=21.09;ReadPosRankSum=1.632;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:1,103:105:99:2247,252,0
chrIV	1105164	.	C	T	3441.01	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=24.93;SB=-1.603e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:3441,358,0
chrIV	1105249	.	A	T	2359	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.68;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2392,255,0
chrIV	1105660	.	T	C	2254	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.32;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2287,255,0
chrIV	1105780	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.453;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.055;QD=20.45;ReadPosRankSum=-1.215;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1853,166,0
chrIV	1106241	.	T	C	1669	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=24.54;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1702,186,0
chrIV	1106326	.	C	T	1073	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.04;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1106,123,0
chrIV	1106554	.	A	G	939	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.56;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:972,105,0
chrIV	1106617	.	C	G	1275	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.25;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1308,144,0
chrIV	1106812	.	C	T	868	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.26;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:901,96,0
chrIV	1106884	.	T	C	863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.040;QD=20.07;ReadPosRankSum=1.652;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:896,99,0
chrIV	1107114	.	T	C	711	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=14.51;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:744,81,0
chrIV	1107118	.	G	A	762	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=13.85;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:84:795,84,0
chrIV	1107187	.	A	G	778	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=13.89;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:90:811,90,0
chrIV	1107223	.	G	A	1309	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1342,141,0
chrIV	1107306	.	T	C	1769	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1802,198,0
chrIV	1107444	.	C	T	1859	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.67;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1892,201,0
chrIV	1107470	.	C	T	2046	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.54;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2079,216,0
chrIV	1107957	.	G	T	1396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.1234;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.046;QD=18.37;ReadPosRankSum=1.276;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1429,156,0
chrIV	1108114	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.86;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1618,177,0
chrIV	1108150	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.4954;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.62;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1603,177,0
chrIV	1108456	.	G	T	1344	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.68;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1377,141,0
chrIV	1108484	.	A	G	1355	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=17.60;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1388,153,0
chrIV	1108508	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=4.574;HaplotypeScore=71.9191;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.765;QD=14.99;ReadPosRankSum=1.652;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1322,141,0
chrIV	1108662	.	G	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.72;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1187,123,0
chrIV	1108696	.	C	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.95;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1455,153,0
chrIV	1109358	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5945;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.26;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1649,183,0
chrIV	1109568	.	T	C	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=2.994;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.095;QD=20.57;ReadPosRankSum=2.342;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1905,210,0
chrIV	1109736	.	A	C	1518	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.69;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1551,165,0
chrIV	1109890	.	T	G	972	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=14.73;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1005,111,0
chrIV	1109982	.	C	T	561	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.34;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,29:29:63:594,63,0
chrIV	1110105	.	T	C	246	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.70;SB=-1.519e-02	GT:AD:DP:GQ:PL	1/1:0,22:23:30:279,30,0
chrIV	1110458	.	C	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.02;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1309,144,0
chrIV	1110571	.	C	A	2000	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.1332;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.99;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2033,216,0
chrIV	1111002	.	G	A	2712	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.98;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2745,303,0
chrIV	1111210	.	A	G	1665	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.30;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1698,186,0
chrIV	1111414	.	T	A	2597	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.5578;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.20;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2630,279,0
chrIV	1111575	.	C	T	2307	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.07;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2340,249,0
chrIV	1111626	.	A	C	1917	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.82;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1950,213,0
chrIV	1111638	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.46;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1784,198,0
chrIV	1111780	.	G	A	3502.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.35;SB=-1.733e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3502,369,0
chrIV	1112609	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.67;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1545,162,0
chrIV	1112647	.	C	T	1710	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.85;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1743,180,0
chrIV	1113053	.	T	C	2054	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.82;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2087,225,0
chrIV	1113116	.	C	T	2642	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.92;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2675,279,0
chrIV	1113224	.	C	T	2746	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.52;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2779,294,0
chrIV	1113284	.	T	G	2334	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.11;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2367,255,0
chrIV	1113683	.	G	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.20;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2017,213,0
chrIV	1113753	.	A	G	1550	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.87;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1583,174,0
chrIV	1113766	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.70;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1431,159,0
chrIV	1113867	.	C	T	1640	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.00;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1673,174,0
chrIV	1114225	.	C	T	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.536;DP=85;Dels=0.00;FS=3.680;HaplotypeScore=11.8642;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.608;QD=20.07;ReadPosRankSum=0.701;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1739,183,0
chrIV	1114429	.	T	A	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=96.2199;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=0.26;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:6:59,6,0
chrIV	1115141	.	T	A	1111	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.37;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1144,120,0
chrIV	1115198	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=3.062;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.289;QD=20.45;ReadPosRankSum=2.334;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1342,144,0
chrIV	1116164	.	G	A	1484	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.53;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1517,159,0
chrIV	1116305	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.31;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1520,162,0
chrIV	1116482	.	G	A	964	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.54;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:997,111,0
chrIV	1116554	.	A	G	1483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3361;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.856;QD=17.87;ReadPosRankSum=1.690;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1516,165,0
chrIV	1116571	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.71;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1605,174,0
chrIV	1116662	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.30;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1237,138,0
chrIV	1116862	.	T	C	1698	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.92;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1731,189,0
chrIV	1117090	.	T	C	1270	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.28;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1303,141,0
chrIV	1117115	.	C	T	1329	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1362,144,0
chrIV	1117201	.	G	T	2412	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.36;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2445,255,0
chrIV	1117839	.	G	A	2144	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.82;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2177,228,0
chrIV	1118402	.	C	T	1093	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3617;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.84;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1126,117,0
chrIV	1118418	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.57;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1082,111,0
chrIV	1118674	.	G	A	2772	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.72;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2805,297,0
chrIV	1118730	.	C	T	1973	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.92;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2006,216,0
chrIV	1118976	.	T	C	1683	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.34;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1716,186,0
chrIV	1119216	.	C	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=12.0309;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.56;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1637,177,0
chrIV	1119792	.	C	T	3148	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.3397;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.17;SB=-1.530e+03	GT:AD:DP:GQ:PL	1/1:0,136:142:99:3181,336,0
chrIV	1119804	.	G	T	2778	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6010;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.87;SB=-1.497e+03	GT:AD:DP:GQ:PL	1/1:0,124:127:99:2811,294,0
chrIV	1119862	.	A	G	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=89;Dels=0.00;FS=6.578;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.010;QD=20.02;ReadPosRankSum=2.311;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1815,198,0
chrIV	1119888	.	T	C	1625	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.58;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1658,183,0
chrIV	1119900	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.370;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.466;QD=19.03;ReadPosRankSum=-0.577;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1803,198,0
chrIV	1120348	.	G	A	1203	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=19.10;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1236,132,0
chrIV	1120363	.	A	T	1001	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.02;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1034,108,0
chrIV	1120367	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.02;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:898,102,0
chrIV	1120541	.	A	T	187.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;DP=106;Dels=0.00;FS=7.325;HaplotypeScore=20.6497;MLEAC=1;MLEAF=0.500;MQ=41.23;MQ0=0;MQRankSum=2.488;QD=1.76;ReadPosRankSum=-5.107;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:87,19:106:99:217,0,363
chrIV	1120689	.	T	C	2182	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.80;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2215,243,0
chrIV	1120915	.	A	G	1836	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.205;QD=19.33;ReadPosRankSum=2.344;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:2,91:95:99:1869,201,0
chrIV	1121173	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1547,159,0
chrIV	1121293	.	C	T	1873	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.72;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1906,198,0
chrIV	1121716	.	T	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.81;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1594,177,0
chrIV	1122844	.	G	A	1683	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.14;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1716,186,0
chrIV	1122913	.	T	C	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.689;QD=19.56;ReadPosRankSum=1.689;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1617,177,0
chrIV	1122952	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.775;QD=19.64;ReadPosRankSum=1.687;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1526,168,0
chrIV	1123442	.	G	C	1168	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.49;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1201,132,0
chrIV	1123489	.	G	T	2001	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.23;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2034,210,0
chrIV	1123525	.	T	C	2156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.417;QD=21.78;ReadPosRankSum=1.662;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2189,240,0
chrIV	1123744	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.109;HaplotypeScore=9.9475;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.917;QD=19.87;ReadPosRankSum=1.691;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1722,192,0
chrIV	1124047	.	T	C	1663	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.17;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1696,186,0
chrIV	1124083	.	G	A	2051	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.04;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2084,219,0
chrIV	1124465	.	G	A	2150	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.12;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2183,234,0
chrIV	1125071	.	A	G	2438	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=23.22;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2471,267,0
chrIV	1125098	.	A	T	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=98;Dels=0.00;FS=2.771;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=0.089;QD=16.59;ReadPosRankSum=2.272;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:2,96:98:99:1659,180,0
chrIV	1125103	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=16.03;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1604,171,0
chrIV	1125139	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.603;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-1.179;QD=16.20;ReadPosRankSum=1.695;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:1,93:95:99:1572,168,0
chrIV	1125429	.	G	C	1759	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.69;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1792,195,0
chrIV	1125758	.	C	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.8110;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.92;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,83:87:99:1592,171,0
chrIV	1125821	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2372;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.26;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1937,207,0
chrIV	1126043	.	C	T	907	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=16.20;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,53:56:96:940,96,0
chrIV	1126090	.	G	C	918	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=16.69;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:951,105,0
chrIV	1126095	.	T	C	948	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.6866;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=16.07;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:981,108,0
chrIV	1126171	.	T	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=15.16;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:1776,195,0
chrIV	1126206	.	C	T	2414	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=18.43;SB=-1.556e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2447,252,0
chrIV	1126266	.	G	A	2100	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=21.87;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2133,219,0
chrIV	1126318	.	G	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.22;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1344,144,0
chrIV	1126330	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.31;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1008,108,0
chrIV	1126356	.	G	A	874	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.60;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:96:907,96,0
chrIV	1126399	.	G	T	594	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=16.50;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:627,66,0
chrIV	1126486	.	A	C	1436	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.94;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1469,159,0
chrIV	1126843	.	A	G	1021	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=17.91;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1054,117,0
chrIV	1126921	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.31;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1589,171,0
chrIV	1127082	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.86;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1368,150,0
chrIV	1127544	.	C	G	2241	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.64;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2274,246,0
chrIV	1127676	.	G	C	1693	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.9068;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.40;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1726,183,0
chrIV	1127809	.	G	A	3027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.3647;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.822;QD=21.47;ReadPosRankSum=0.190;SB=-1.771e+03	GT:AD:DP:GQ:PL	1/1:1,136:141:99:3060,321,0
chrIV	1127919	.	T	C	1806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.256;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.971;QD=19.63;ReadPosRankSum=1.618;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1839,204,0
chrIV	1127926	.	G	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.77;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1911,201,0
chrIV	1128039	.	G	A	1457	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.96;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1490,156,0
chrIV	1128060	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.37;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1539,168,0
chrIV	1128108	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=16.65;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1448,156,0
chrIV	1128135	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=7.6220;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=16.92;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1370,144,0
chrIV	1128699	.	T	C	1362	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.08;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1395,150,0
chrIV	1128738	.	C	T	1905	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.95;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1938,201,0
chrIV	1128763	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.92;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1523,165,0
chrIV	1128837	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.68;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1191,132,0
chrIV	1128918	.	A	G	1069	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.982;QD=17.82;ReadPosRankSum=1.675;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1102,120,0
chrIV	1128924	.	T	C	1108	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.44;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1141,120,0
chrIV	1128927	.	T	C	1118	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.7021;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.28;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1151,126,0
chrIV	1129035	.	T	C	1915	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1948,213,0
chrIV	1129197	.	T	A	2168	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.57;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2201,228,0
chrIV	1129373	.	A	G	1895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.582;QD=20.60;ReadPosRankSum=1.694;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1928,210,0
chrIV	1129434	.	A	G	1738	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1771,189,0
chrIV	1129980	.	A	G	1444	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.24;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1477,159,0
chrIV	1130157	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1694,189,0
chrIV	1130451	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.11;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1713,180,0
chrIV	1130680	.	G	A	656	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=16.40;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,39:40:72:689,72,0
chrIV	1132119	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.39;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1252,129,0
chrIV	1132333	.	A	G	2146	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.11;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2179,234,0
chrIV	1132452	.	T	C	1209	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.2393;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1242,138,0
chrIV	1133503	.	A	T	2364	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2397,252,0
chrIV	1133759	.	G	A	1865	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.22;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1898,198,0
chrIV	1133923	.	G	C	2206	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.43;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2239,246,0
chrIV	1133979	.	A	G	2087	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1437;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=18.97;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2120,231,0
chrIV	1134325	.	C	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.10;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1641,180,0
chrIV	1134931	.	G	A	1134	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.40;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:53:99:1167,120,0
chrIV	1135050	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.83;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1517,168,0
chrIV	1135187	.	C	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.48;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1558,168,0
chrIV	1135217	.	G	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.42;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1378,144,0
chrIV	1135243	.	C	A	977	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.43;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1010,102,0
chrIV	1135287	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.30;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1326,141,0
chrIV	1135309	.	C	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.50;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1468,162,0
chrIV	1135620	.	T	A	1086	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.03;FS=0.000;HaplotypeScore=10.8780;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=15.51;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1119,117,0
chrIV	1136116	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.85;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1759,183,0
chrIV	1136171	.	C	G	2214	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.59;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2247,246,0
chrIV	1136324	.	A	C	1952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=4.981;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.958;QD=22.70;ReadPosRankSum=1.284;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1985,216,0
chrIV	1136363	.	A	G	1448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4490;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=-0.709;QD=16.45;ReadPosRankSum=1.693;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1481,159,0
chrIV	1136366	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.26;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1535,168,0
chrIV	1136387	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=65;Dels=0.00;FS=3.080;HaplotypeScore=4.2678;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.251;QD=17.17;ReadPosRankSum=2.373;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:2,62:65:99:1149,126,0
chrIV	1136470	.	T	A	1231	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1264,132,0
chrIV	1136725	.	G	A	929	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.77;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:962,99,0
chrIV	1136834	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.52;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1407,150,0
chrIV	1137089	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.1784;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.95;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1350,147,0
chrIV	1137328	.	T	C	1446	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.70;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1479,162,0
chrIV	1137538	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.06;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1802,192,0
chrIV	1137630	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.55;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1604,174,0
chrIV	1137761	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.67;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1398,147,0
chrIV	1137806	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.01;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1508,159,0
chrIV	1138235	.	G	A	764	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.22;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:84:797,84,0
chrIV	1138398	.	C	T	1934	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.98;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1967,204,0
chrIV	1138406	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.11;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1743,189,0
chrIV	1138886	.	T	C	1550	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.23;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1583,171,0
chrIV	1138987	.	A	C	1443	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.90;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1476,162,0
chrIV	1139004	.	C	G	1337	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.66;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1370,150,0
chrIV	1139381	.	T	A	2444	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.44;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2477,279,0
chrIV	1139520	.	T	C	1452	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.20;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1485,162,0
chrIV	1140038	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8750;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.95;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,63:66:99:1482,162,0
chrIV	1140095	.	A	G	1687	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.43;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1720,186,0
chrIV	1140165	.	T	C	2113	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.4535;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2146,234,0
chrIV	1140266	.	T	C	1669	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.96;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1702,183,0
chrIV	1140344	.	T	C	1011	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.72;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1044,114,0
chrIV	1140364	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.10;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1198,132,0
chrIV	1140510	.	T	C	2030	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.30;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2063,222,0
chrIV	1141061	.	T	C	2007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=104;Dels=0.00;FS=18.924;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-0.245;QD=19.30;ReadPosRankSum=3.338;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:4,100:104:99:2040,225,0
chrIV	1141130	.	C	T	2278	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.03;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2311,240,0
chrIV	1141245	.	G	A	1096	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1129,117,0
chrIV	1141284	.	C	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.68;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1383,141,0
chrIV	1141710	.	A	G	2188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=4.603;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=0.463;QD=21.66;ReadPosRankSum=0.909;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2221,240,0
chrIV	1141725	.	T	C	2082	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=2.787;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.463;QD=18.93;ReadPosRankSum=2.314;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:2,107:110:99:2115,231,0
chrIV	1142034	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.10;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1535,162,0
chrIV	1142250	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.90;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1454,156,0
chrIV	1142265	.	T	C	1337	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.10;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1370,150,0
chrIV	1143051	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1504,156,0
chrIV	1143495	.	A	G	2102	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.89;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2135,234,0
chrIV	1143696	.	T	C	1465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.029;QD=22.89;ReadPosRankSum=1.678;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1498,165,0
chrIV	1143750	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.89;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1193,132,0
chrIV	1143783	.	A	G	1167	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.45;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1200,132,0
chrIV	1143822	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=17.83;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1513,162,0
chrIV	1143838	.	C	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.51;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1810,189,0
chrIV	1143894	.	A	C	1726	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.36;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1759,192,0
chrIV	1144083	.	T	C	1717	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.30;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1750,189,0
chrIV	1144305	.	C	T	2692	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.04;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2725,285,0
chrIV	1144484	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.8583;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.54;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1657,171,0
chrIV	1145144	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1423,159,0
chrIV	1145628	.	C	T	1889	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.22;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1922,201,0
chrIV	1146161	.	G	T	1999	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.80;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2032,210,0
chrIV	1146376	.	T	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.27;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1776,192,0
chrIV	1146468	.	T	C	540	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.0096;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=14.59;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:63:573,63,0
chrIV	1146477	.	A	G	428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=40;Dels=0.00;FS=5.607;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=0.087;QD=10.70;ReadPosRankSum=1.646;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:1,39:40:51:461,51,0
chrIV	1146894	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1524;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.67;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1597,174,0
chrIV	1146924	.	C	G	1804	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.22;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1837,198,0
chrIV	1147265	.	T	A	1935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=6.4558;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.247;QD=18.25;ReadPosRankSum=1.666;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,104:105:99:1968,207,0
chrIV	1147285	.	A	T	2146	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=19.33;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2179,234,0
chrIV	1147320	.	G	A	2460	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.43;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2493,255,0
chrIV	1147489	.	T	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.99;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1748,180,0
chrIV	1147805	.	T	G	1755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.917;QD=20.41;ReadPosRankSum=1.365;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1788,195,0
chrIV	1147847	.	C	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.31;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1639,171,0
chrIV	1147937	.	G	A	1605	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.32;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1638,171,0
chrIV	1147951	.	T	C	1491	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.62;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1524,165,0
chrIV	1148075	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.21;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1271,135,0
chrIV	1148435	.	G	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.13;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1681,186,0
chrIV	1148558	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.47;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1437,156,0
chrIV	1148573	.	G	A	1546	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=18.85;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1579,165,0
chrIV	1148689	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.13;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1675,180,0
chrIV	1148726	.	C	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.72;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1760,183,0
chrIV	1148912	.	A	G	1794	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.423;QD=19.93;ReadPosRankSum=1.694;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1827,198,0
chrIV	1149107	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.82;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1520,162,0
chrIV	1149128	.	C	T	1834	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.91;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1867,195,0
chrIV	1149368	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.94;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1302,135,0
chrIV	1149478	.	T	C	2412	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.55;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2445,261,0
chrIV	1149488	.	C	T	2766	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.03;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.96;SB=-1.559e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:2799,297,0
chrIV	1149565	.	G	A	3693.01	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.11;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,164:167:99:3693,396,0
chrIV	1149761	.	G	A	1692	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=19.67;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1725,186,0
chrIV	1149762	.	C	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.00;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1753,186,0
chrIV	1149773	.	C	G	1623	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.08;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1656,186,0
chrIV	1149909	.	A	T	3091	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.1956;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.24;SB=-1.621e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3124,339,0
chrIV	1150131	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.81;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1182,132,0
chrIV	1150196	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.03;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1421,153,0
chrIV	1150248	.	G	A	1975	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.55;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2008,210,0
chrIV	1150352	.	G	C	2147	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.13;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2180,240,0
chrIV	1150413	.	T	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.17;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1304,138,0
chrIV	1150452	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=3.041;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.236;QD=20.32;ReadPosRankSum=2.377;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1415,153,0
chrIV	1150562	.	C	A	2072	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.28;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2105,219,0
chrIV	1150605	.	A	G	2432	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=24.32;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2465,270,0
chrIV	1150620	.	C	T	2549	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.82;SB=-1.391e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2582,276,0
chrIV	1150675	.	T	C	2286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=109;Dels=0.00;FS=6.392;HaplotypeScore=4.6449;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=0.308;QD=20.97;ReadPosRankSum=2.404;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:2,106:109:99:2319,252,0
chrIV	1150691	.	A	G	2293	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=22.05;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2326,255,0
chrIV	1150776	.	A	G	2346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=4.559;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.277;QD=23.00;ReadPosRankSum=1.663;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:1,99:102:99:2379,267,0
chrIV	1150827	.	A	G	1596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=4.6982;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;MQRankSum=-0.306;QD=18.56;ReadPosRankSum=1.528;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1629,198,0
chrIV	1150828	.	G	A	1593	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=4.6982;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=18.74;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1626,195,0
chrIV	1150963	.	T	C	2025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.753;DP=105;Dels=0.00;FS=17.300;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=2.036;QD=19.29;ReadPosRankSum=3.723;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:5,99:105:99:2058,222,0
chrIV	1150964	.	G	A	2040	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=19.81;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2073,222,0
chrIV	1151001	.	T	A	1741	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=18.14;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1774,189,0
chrIV	1151048	.	A	G	2256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=107;Dels=0.00;FS=8.317;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=1;MQRankSum=0.987;QD=21.08;ReadPosRankSum=1.614;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2289,252,0
chrIV	1151056	.	A	G	2199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.280;DP=103;Dels=0.00;FS=8.563;HaplotypeScore=6.6822;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=1;MQRankSum=1.060;QD=21.35;ReadPosRankSum=1.865;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:2,100:103:99:2232,246,0
chrIV	1151094	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=1;QD=20.21;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1852,192,0
chrIV	1151115	.	T	G	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=89;Dels=0.00;FS=4.924;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=2;MQRankSum=-1.374;QD=18.92;ReadPosRankSum=1.692;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1717,189,0
chrIV	1151234	.	G	A	1962	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=20.44;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1995,219,0
chrIV	1151247	.	G	A	652.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.806;DP=94;Dels=0.00;FS=26.419;HaplotypeScore=15.3409;MLEAC=1;MLEAF=0.500;MQ=42.09;MQ0=0;MQRankSum=-3.752;QD=6.94;ReadPosRankSum=2.994;SB=-1.610e+02	GT:AD:DP:GQ:PL	0/1:54,36:94:99:682,0,865
chrIV	1151283	.	T	C	625.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.718;DP=86;Dels=0.00;FS=16.732;HaplotypeScore=8.0381;MLEAC=1;MLEAF=0.500;MQ=42.07;MQ0=0;MQRankSum=-5.444;QD=7.27;ReadPosRankSum=0.481;SB=-7.601e+01	GT:AD:DP:GQ:PL	0/1:50,35:86:99:655,0,951
chrIV	1151301	.	T	C	303.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DP=72;Dels=0.00;FS=31.203;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=40.81;MQ0=0;MQRankSum=-5.872;QD=4.21;ReadPosRankSum=1.499;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:51,21:72:99:333,0,1016
chrIV	1151306	.	A	G	291.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;DP=72;Dels=0.00;FS=31.070;HaplotypeScore=4.9055;MLEAC=1;MLEAF=0.500;MQ=40.41;MQ0=0;MQRankSum=-5.737;QD=4.04;ReadPosRankSum=1.009;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,19:72:99:321,0,1035
chrIV	1151324	.	G	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=22.64;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1550,162,0
chrIV	1151369	.	A	G	690	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=15.00;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:723,84,0
chrIV	1151379	.	T	C	47.97	filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.99;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chrIV	1151759	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.171;QD=21.49;ReadPosRankSum=1.635;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1580,174,0
chrIV	1151799	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.617;QD=21.34;ReadPosRankSum=1.674;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1292,141,0
chrIV	1151893	.	T	G	1510	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=22.88;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1543,165,0
chrIV	1152100	.	T	G	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=77;Dels=0.00;FS=2.111;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=1.593;QD=18.26;ReadPosRankSum=1.593;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1439,162,0
chrIV	1152109	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=16.44;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1299,141,0
chrIV	1152478	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.09;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1680,174,0
chrIV	1152705	.	G	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.1197;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.42;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1748,183,0
chrIV	1152946	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.90;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1078,114,0
chrIV	1153009	.	G	A	905	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.11;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:99:938,99,0
chrIV	1153171	.	G	T	1809	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=20.33;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1842,195,0
chrIV	1153177	.	G	A	1799	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.34;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1832,195,0
chrIV	1153303	.	C	T	943	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.00;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:976,105,0
chrIV	1153699	.	C	T	1839	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.43;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1872,198,0
chrIV	1153966	.	T	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.54;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1196,129,0
chrIV	1154321	.	C	T	911	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=8;QD=16.56;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:3,52:55:99:944,99,0
chrIV	1154405	.	A	G	787	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=22;MQRankSum=-1.211;QD=12.30;ReadPosRankSum=2.215;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:11,53:64:90:820,90,0
chrIV	1154411	.	G	A	909	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=23;QD=14.43;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:10,53:63:99:942,99,0
chrIV	1154412	.	A	T	854	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=20;QD=14.23;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:10,50:60:99:887,99,0
chrIV	1154468	.	A	G	903	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=28;QD=13.48;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:20,45:67:99:936,102,0
chrIV	1154507	.	C	G	642	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.18;MQ0=28;QD=10.70;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:23,36:60:72:675,72,0
chrIV	1154509	.	A	T	669	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=24;MQRankSum=0.975;QD=11.95;ReadPosRankSum=1.625;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:23,33:56:72:702,72,0
chrIV	1154513	.	A	G	598	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.97;MQ0=23;QD=11.07;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:21,33:54:69:631,69,0
chrIV	1154517	.	G	C	598	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=21;QD=11.73;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:20,31:51:69:631,69,0
chrIV	1154518	.	C	A	633	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.24;MQ0=21;QD=12.41;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:20,31:51:69:666,69,0
chrIV	1154523	.	G	T	431	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=21;QD=8.98;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:20,27:48:54:464,54,0
chrIV	1154524	.	T	G	461	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=21;QD=9.60;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:20,27:48:57:494,57,0
chrIV	1154525	.	A	G	488	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.98;MQ0=20;QD=10.38;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:20,27:47:57:521,57,0
chrIV	1154528	.	A	G	536	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=21;QD=8.93;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:21,39:60:63:569,63,0
chrIV	1154538	.	G	C	558	filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.83;MQ0=23;QD=8.72;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:23,41:64:66:591,66,0
chrIV	1154539	.	C	A	576	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.01;MQ0=22;MQRankSum=-1.564;QD=9.14;ReadPosRankSum=0.380;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:23,40:63:63:609,63,0
chrIV	1154573	.	A	G	580	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.55;MQ0=22;QD=8.79;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:22,44:66:69:613,69,0
chrIV	1154574	.	A	T	617	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=21;QD=9.49;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:21,44:65:69:650,69,0
chrIV	1154575	.	C	T	617	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.74;MQ0=21;QD=9.49;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:21,44:65:69:650,69,0
chrIV	1154576	.	A	G	618	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.38;MQ0=23;QD=9.22;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:23,44:67:69:651,69,0
chrIV	1154583	.	T	A	596	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=27;QD=8.28;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:24,48:72:66:629,66,0
chrIV	1154630	.	G	T	567	filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.21;MQ0=35;QD=8.86;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:24,40:64:63:600,63,0
chrIV	1155661	.	T	C	287	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.10;MQ0=35;QD=5.52;SB=-8.632e-03	GT:AD:DP:GQ:PL	1/1:18,34:52:36:320,36,0
chrIV	1155698	.	G	A	348	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.33;MQ0=43;QD=5.70;SB=-7.475e-03	GT:AD:DP:GQ:PL	1/1:15,45:61:39:381,39,0
chrIV	1155755	.	T	A	399	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=16.71;MQ0=42;QD=6.88;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:19,39:58:45:432,45,0
chrIV	1155785	.	G	T	569	filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.49;MQ0=38;QD=8.89;SB=-6.523e-03	GT:AD:DP:GQ:PL	1/1:20,44:64:63:602,63,0
chrIV	1156050	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;MQRankSum=0.000;QD=17.92;ReadPosRankSum=1.680;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1216,135,0
chrIV	1156180	.	A	G	914	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=21.26;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:947,105,0
chrIV	1156234	.	G	T	870	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.75;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:93:903,93,0
chrIV	1156298	.	G	A	874	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=23.62;SB=-2.340e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:907,96,0
chrIV	1156299	.	G	A	898	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=24.27;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:931,96,0
chrIV	1156399	.	T	C	588	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=15.89;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:69:621,69,0
chrIV	1156406	.	A	G	537	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=14.51;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:63:570,63,0
chrIV	1156529	.	C	A	19.06	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.526;DP=46;Dels=0.00;FS=17.240;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=56.39;MQ0=0;MQRankSum=0.786;QD=0.41;ReadPosRankSum=-4.933;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,11:46:49:49,0,530
chrIV	1156790	.	A	T	731	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.83;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:764,81,0
chrIV	1156908	.	C	T	825	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.64;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:90:858,90,0
chrIV	1156945	.	T	G	377	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=14.50;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,25:26:45:410,45,0
chrIV	1157008	.	T	C	594	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.47;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:627,66,0
chrIV	1157271	.	A	G	1092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=3.617;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.603;QD=23.23;ReadPosRankSum=1.657;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:99:1125,123,0
chrIV	1159971	.	G	A	516	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=18;QD=9.74;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:1,52:53:57:549,57,0
chrIV	1159979	.	G	C	462	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.35;MQ0=19;QD=9.83;SB=-6.553e-03	GT:AD:DP:GQ:PL	1/1:1,46:47:54:495,54,0
chrIV	1160110	.	T	A	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.78;MQ0=41;QD=0.45;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:19,35:55:6:56,6,0
chrIV	1161556	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.18;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1033,108,0
chrIV	1161568	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=19.35;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1194,123,0
chrIV	1163953	.	T	C	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.637;DP=109;Dels=0.00;FS=28.627;HaplotypeScore=22.1876;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-6.916;QD=0.21;ReadPosRankSum=2.115;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:80,29:109:53:53,0,1761
chrIV	1163959	.	A	G	42.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;DP=109;Dels=0.00;FS=26.281;HaplotypeScore=13.8854;MLEAC=1;MLEAF=0.500;MQ=49.09;MQ0=0;MQRankSum=-6.246;QD=0.39;ReadPosRankSum=0.867;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:80,29:109:72:72,0,1740
chrIV	1164250	.	G	A	533.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.948;DP=127;Dels=0.00;FS=15.042;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=52.88;MQ0=0;MQRankSum=-8.333;QD=4.20;ReadPosRankSum=1.568;SB=-2.390e+02	GT:AD:DP:GQ:PL	0/1:90,37:127:99:563,0,1696
chrIV	1164310	.	G	A	142.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=130;Dels=0.00;FS=18.057;HaplotypeScore=8.1827;MLEAC=1;MLEAF=0.500;MQ=52.47;MQ0=0;MQRankSum=-7.220;QD=1.09;ReadPosRankSum=0.729;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:103,27:130:99:172,0,1996
chrIV	1164312	.	A	C	124.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760;DP=130;Dels=0.00;FS=11.931;HaplotypeScore=8.1827;MLEAC=1;MLEAF=0.500;MQ=52.88;MQ0=0;MQRankSum=-6.672;QD=0.95;ReadPosRankSum=1.390;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:107,23:130:99:154,0,2080
chrIV	1165262	.	T	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.52;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1114,120,0
chrIV	1165439	.	A	G	852	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:885,99,0
chrIV	1165910	.	A	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.15;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1282,141,0
chrIV	1166358	.	G	A	2660	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=26.08;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2693,282,0
chrIV	1166461	.	C	T	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=62;Dels=0.00;FS=3.774;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.509;QD=20.42;ReadPosRankSum=1.341;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1299,116,0
chrIV	1166561	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.24;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:981,108,0
chrIV	1166645	.	G	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=16.2414;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.20;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1568,165,0
chrIV	1166678	.	A	G	2113	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.72;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2146,231,0
chrIV	1166693	.	G	A	2102	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=15.9620;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.02;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2135,222,0
chrIV	1166741	.	G	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.87;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1619,174,0
chrIV	1166743	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=91;Dels=0.00;FS=8.126;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.675;QD=18.07;ReadPosRankSum=3.299;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:4,86:91:99:1677,180,0
chrIV	1166782	.	A	G	1513	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.244;QD=21.31;ReadPosRankSum=1.683;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1546,168,0
chrIV	1166844	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.22;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1380,150,0
chrIV	1166875	.	T	C	1207	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.55;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1240,135,0
chrIV	1166919	.	T	C	761	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=16.19;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:794,90,0
chrIV	1166921	.	T	C	751	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.33;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:784,87,0
chrIV	1166937	.	T	C	975	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.53;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1008,108,0
chrIV	1167052	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.04;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1968,204,0
chrIV	1172908	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.55;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1795,195,0
chrIV	1172914	.	G	A	1813	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.29;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1846,192,0
chrIV	1173007	.	G	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.45;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1363,150,0
chrIV	1173622	.	G	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.45;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1363,141,0
chrIV	1173661	.	G	C	985	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=17.59;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1018,114,0
chrIV	1173670	.	C	T	795	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=16.56;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:828,87,0
chrIV	1173678	.	T	C	888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=3.087;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.252;QD=16.44;ReadPosRankSum=2.359;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:921,102,0
chrIV	1173894	.	C	T	2036	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4493;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=23.67;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2069,219,0
chrIV	1174054	.	C	A	1394	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=21.12;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1427,150,0
chrIV	1174213	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.30;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1795,198,0
chrIV	1174270	.	T	C	2023	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.86;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2056,228,0
chrIV	1174282	.	G	A	2153	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=18.56;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2186,234,0
chrIV	1174395	.	G	A	2930	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.37;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2963,336,0
chrIV	1174496	.	C	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.74;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1336,144,0
chrIV	1174551	.	C	T	2027	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.57;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2060,213,0
chrIV	1174575	.	T	C	2548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=3.042;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.091;QD=20.89;ReadPosRankSum=2.409;SB=-1.562e+03	GT:AD:DP:GQ:PL	1/1:2,120:122:99:2581,282,0
chrIV	1174611	.	A	G	3361.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.97;SB=-1.632e+03	GT:AD:DP:GQ:PL	1/1:0,153:153:99:3361,366,0
chrIV	1174695	.	C	T	2373	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.28;SB=-1.315e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2406,249,0
chrIV	1174702	.	C	T	2058	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=17.29;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2091,228,0
chrIV	1174722	.	T	C	1858	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.05;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1891,204,0
chrIV	1214903	.	T	C	2411	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.69;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2444,270,0
chrIV	1216215	.	C	A	1137	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.05;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1170,132,0
chrIV	1217031	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.99;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1572,171,0
chrIV	1223750	.	A	C	1604	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1637,177,0
chrIV	1223971	.	C	A	907	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:940,99,0
chrIV	1224090	.	T	C	1595	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.79;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1628,177,0
chrIV	1224397	.	T	C	753	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.82;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:40:84:786,84,0
chrIV	1224509	.	A	G	867	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.43;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:99:900,99,0
chrIV	1225163	.	C	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1588,168,0
chrIV	1226308	.	T	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.82;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1343,147,0
chrIV	1227010	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.87;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1497,165,0
chrIV	1227840	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.1330;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.95;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1767,189,0
chrIV	1229336	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.89;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1579,171,0
chrIV	1229404	.	C	T	2245	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.45;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2278,240,0
chrIV	1229808	.	A	G	2622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.711;QD=23.41;ReadPosRankSum=-0.062;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2655,291,0
chrIV	1230069	.	C	T	1977	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.38;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2010,210,0
chrIV	1230355	.	T	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.82;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1986,216,0
chrIV	1230563	.	T	C	1808	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.02;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1841,204,0
chrIV	1231118	.	G	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.34;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1619,171,0
chrIV	1231256	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.68;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1135,123,0
chrIV	1231307	.	C	T	765	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=16.63;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:798,84,0
chrIV	1231324	.	T	C	615	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=15.77;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:648,72,0
chrIV	1231435	.	A	G	735	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.62;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:84:768,84,0
chrIV	1231441	.	T	C	767	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.56;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:84:800,84,0
chrIV	1231627	.	C	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5067;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.88;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1453,153,0
chrIV	1231692	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.79;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1493,153,0
chrIV	1231776	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=26.02;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1698,177,0
chrIV	1232017	.	C	T	1838	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.76;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1871,192,0
chrIV	1232033	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.39;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1725,186,0
chrIV	1232341	.	C	T	1799	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.94;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1832,192,0
chrIV	1232436	.	T	C	1525	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.06;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1558,174,0
chrIV	1232536	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.529;QD=20.07;ReadPosRankSum=1.684;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1478,162,0
chrIV	1232659	.	G	A	1099	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.55;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1132,120,0
chrIV	1232773	.	C	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.2056;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.82;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1907,204,0
chrIV	1232917	.	A	G	2214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=96;Dels=0.00;FS=10.321;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.013;QD=23.06;ReadPosRankSum=2.397;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:2,92:96:99:2247,240,0
chrIV	1233187	.	G	A	4447.01	PASS	AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=8.2975;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.04;SB=-1.872e+03	GT:AD:DP:GQ:PL	1/1:0,183:185:99:4447,466,0
chrIV	1233335	.	C	A	1664	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.12;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1697,177,0
chrIV	1233488	.	T	C	1696	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.20;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1729,186,0
chrIV	1233518	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.36;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1601,171,0
chrIV	1233588	.	C	G	1131	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.94;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1164,123,0
chrIV	1233634	.	C	T	1154	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.98;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1187,126,0
chrIV	1233840	.	C	T	1495	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.11;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1528,162,0
chrIV	1233967	.	G	A	798	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=15.35;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:87:831,87,0
chrIV	1234571	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.016;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.637;QD=17.41;ReadPosRankSum=1.637;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1321,144,0
chrIV	1234628	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.45;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1307,135,0
chrIV	1234918	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=8.122;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.543;QD=23.84;ReadPosRankSum=2.377;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1654,180,0
chrIV	1235372	.	G	A	1836	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.67;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1869,195,0
chrIV	1235582	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.9558;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.67;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1587,168,0
chrIV	1235594	.	A	G	1369	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.28;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1402,156,0
chrIV	1235733	.	T	C	1209	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.8540;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=18.32;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1242,138,0
chrIV	1235765	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=20.78;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1571,165,0
chrIV	1235867	.	C	T	1002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=3.096;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.170;QD=19.27;ReadPosRankSum=1.664;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1035,108,0
chrIV	1235870	.	T	C	935	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.33;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:968,105,0
chrIV	1236071	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=26.00;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1229,129,0
chrIV	1236152	.	C	G	1243	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.55;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1276,138,0
chrIV	1236154	.	G	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.73;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1414,147,0
chrIV	1236223	.	A	G	1883	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.92;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1916,207,0
chrIV	1236252	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.97;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1856,195,0
chrIV	1236391	.	C	T	871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.722;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.4502;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.372;QD=18.15;ReadPosRankSum=1.516;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:70:904,70,0
chrIV	1236446	.	G	A	2165	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.09;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2198,240,0
chrIV	1236463	.	C	T	2529	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.99;SB=-1.516e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2562,261,0
chrIV	1236974	.	G	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.26;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1694,183,0
chrIV	1237361	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=22.48;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1427,150,0
chrIV	1237375	.	G	A	1069	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.96;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1102,117,0
chrIV	1237427	.	A	G	864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.6449;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.700;QD=18.00;ReadPosRankSum=1.659;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:96:897,96,0
chrIV	1237429	.	A	G	857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=2.697;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.025;QD=17.49;ReadPosRankSum=2.350;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:96:890,96,0
chrIV	1237480	.	G	A	1193	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.22;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1226,129,0
chrIV	1237542	.	A	T	1673	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.485;QD=19.92;ReadPosRankSum=1.650;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1706,177,0
chrIV	1237959	.	T	A	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.489;DP=57;Dels=0.00;FS=3.409;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=0.030;QD=20.21;ReadPosRankSum=1.672;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1185,126,0
chrIV	1238041	.	T	A	2623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=112;Dels=0.00;FS=3.293;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.390;QD=23.42;ReadPosRankSum=1.701;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2656,285,0
chrIV	1238227	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.81;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1726,183,0
chrIV	1238230	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=1.215;QD=18.84;ReadPosRankSum=1.613;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1691,183,0
chrIV	1238324	.	C	T	2805	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.21;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2838,294,0
chrIV	1238453	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.01;FS=3.016;HaplotypeScore=8.1041;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.123;QD=20.21;ReadPosRankSum=2.380;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1468,159,0
chrIV	1238801	.	T	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.6121;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.54;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1422,147,0
chrIV	1238997	.	C	T	983	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.91;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1016,108,0
chrIV	1239047	.	T	G	211.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.651;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=1.519;QD=13.19;ReadPosRankSum=-0.651;SB=-1.474e+02	GT:AD:DP:GQ:PL	1/1:1,15:16:27:244,27,0
chrIV	1239051	.	T	C	235	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=13.82;SB=-1.839e+02	GT:AD:DP:GQ:PL	1/1:0,16:17:30:268,30,0
chrIV	1239053	.	T	G	247	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-1.746;QD=11.76;ReadPosRankSum=2.553;SB=-1.479e+02	GT:AD:DP:GQ:PL	1/1:4,17:21:30:280,30,0
chrIV	1239087	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.277;QD=23.78;ReadPosRankSum=1.663;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1222,138,0
chrIV	1239368	.	T	C	2079	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8273;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.90;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2112,231,0
chrIV	1240134	.	A	G	1845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=85;Dels=0.00;FS=2.888;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.559;QD=21.71;ReadPosRankSum=2.391;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:2,81:85:99:1878,204,0
chrIV	1240175	.	G	A	1862	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.17;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1895,198,0
chrIV	1240320	.	C	T	2154	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.76;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2187,228,0
chrIV	1240455	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.32;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1432,153,0
chrIV	1240541	.	C	T	1377	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.86;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1410,147,0
chrIV	1240919	.	C	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.00;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1113,114,0
chrIV	1241008	.	C	G	983	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=14.04;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1016,108,0
chrIV	1241019	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=14.17;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1039,114,0
chrIV	1241351	.	G	A	1302	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.34;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1335,147,0
chrIV	1241384	.	A	G	1255	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4083;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.24;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1288,141,0
chrIV	1241540	.	T	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.9378;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1190,129,0
chrIV	1242168	.	T	C	622	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=16.81;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:655,72,0
chrIV	1242169	.	A	G	597	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;MQRankSum=-1.348;QD=16.58;ReadPosRankSum=1.636;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:69:630,69,0
chrIV	1242178	.	T	A	600	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=19.35;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:633,69,0
chrIV	1242241	.	T	A	799	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.866;QD=22.19;ReadPosRankSum=1.636;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:87:832,87,0
chrIV	1242759	.	T	A	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.756;QD=23.66;ReadPosRankSum=1.683;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1713,180,0
chrIV	1243136	.	A	C	2997	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=24.57;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:3030,330,0
chrIV	1243676	.	G	A	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=17.06;MQ0=13;QD=1.18;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,19:21:6:56,6,0
chrIV	1243749	.	T	C	228.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=1;MLEAF=0.500;MQ=14.08;MQ0=44;MQRankSum=-0.008;QD=2.30;ReadPosRankSum=-0.985;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:47,52:99:99:258,0,287
chrIV	1244360	.	T	C	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=6.76;MQ0=79;MQRankSum=0.296;QD=0.13;ReadPosRankSum=1.818;SB=-6.690e-03	GT:AD:DP:GQ:PL	0/1:43,46:89:41:41,0,41
chrIV	1245374	.	T	C	383.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DP=73;Dels=0.00;FS=101.039;HaplotypeScore=8.9261;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=0;MQRankSum=6.850;QD=5.25;ReadPosRankSum=-1.258;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,24:73:99:413,0,739
chrIV	1245593	.	T	C	1040.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.366;DP=69;Dels=0.00;FS=170.631;HaplotypeScore=5.7055;MLEAC=1;MLEAF=0.500;MQ=27.09;MQ0=0;MQRankSum=6.236;QD=15.07;ReadPosRankSum=0.496;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:20,49:69:58:1070,0,58
chrIV	1245635	.	C	T	812.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.857;DP=75;Dels=0.00;FS=143.168;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=10;MQRankSum=5.831;QD=10.83;ReadPosRankSum=-1.923;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:19,56:75:99:842,0,111
chrIV	1245641	.	A	G	610.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;DP=75;Dels=0.00;FS=139.687;HaplotypeScore=3.3449;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=13;MQRankSum=5.786;QD=8.13;ReadPosRankSum=-0.641;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:20,55:75:99:640,0,114
chrIV	1245820	.	C	T	4489.01	PASS	AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=11.1059;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=24.01;SB=-2.010e+03	GT:AD:DP:GQ:PL	1/1:0,187:187:99:4489,466,0
chrIV	1246233	.	T	C	2880	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.647;QD=23.61;ReadPosRankSum=-1.249;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2913,300,0
chrIV	1246293	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1551,171,0
chrIV	1246650	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.35;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1486,162,0
chrIV	1246923	.	T	C	2225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.156;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.313;QD=24.45;ReadPosRankSum=1.618;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2258,237,0
chrIV	1247013	.	G	A	2046	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8526;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=22.48;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2079,225,0
chrIV	1247388	.	T	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.89;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1733,183,0
chrIV	1247397	.	A	T	1770	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=20.11;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1803,186,0
chrIV	1247703	.	T	C	1658	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1732;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.72;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1691,186,0
chrIV	1248206	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.22;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1365,144,0
chrIV	1248319	.	G	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3999;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.18;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1253,135,0
chrIV	1248513	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.48;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1221,132,0
chrIV	1248882	.	T	G	1300	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.97;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1333,147,0
chrIV	1248985	.	C	T	1116	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.58;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1149,120,0
chrIV	1249116	.	T	C	2173	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2206,243,0
chrIV	1249201	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.83;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1190,129,0
chrIV	1249356	.	G	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.11;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1965,204,0
chrIV	1249551	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.99;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1792,192,0
chrIV	1249714	.	C	G	1510	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.2063;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.16;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1543,168,0
chrIV	1249974	.	T	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.07;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1425,156,0
chrIV	1250091	.	T	C	777	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=16.19;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:90:810,90,0
chrIV	1250153	.	T	C	1636	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.962;QD=24.06;ReadPosRankSum=2.377;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1669,180,0
chrIV	1250194	.	T	C	1892	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.587;QD=22.00;ReadPosRankSum=2.393;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1925,210,0
chrIV	1250522	.	T	C	2085	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7791;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.95;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2118,231,0
chrIV	1250566	.	A	G	2133	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.44;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2166,237,0
chrIV	1250653	.	A	G	1899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=6.636;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.289;QD=23.44;ReadPosRankSum=2.359;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1932,210,0
chrIV	1251061	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.577;QD=16.46;ReadPosRankSum=1.677;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:99:1103,120,0
chrIV	1251071	.	G	A	1248	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=16.86;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1281,138,0
chrIV	1251246	.	C	G	1520	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=16.17;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1553,168,0
chrIV	1251433	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.04;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1594,168,0
chrIV	1251694	.	T	C	2565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=128;Dels=0.00;FS=7.156;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.520;QD=20.04;ReadPosRankSum=2.411;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:2,126:128:99:2598,279,0
chrIV	1251752	.	C	T	2952	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.24;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2985,321,0
chrIV	1252027	.	G	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.83;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1845,192,0
chrIV	1252116	.	A	G	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.963;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.6518;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=0.230;QD=17.90;ReadPosRankSum=2.396;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1662,183,0
chrIV	1252245	.	A	G	51.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.004;DP=49;Dels=0.00;FS=2.152;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=-0.420;QD=1.06;ReadPosRankSum=-1.625;SB=2.03	GT:AD:DP:GQ:PL	1/1:45,4:49:9:84,9,0
chrIV	1252300	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.274;QD=20.16;ReadPosRankSum=1.672;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1182,129,0
chrIV	1252516	.	T	C	1946	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=3.415;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.731;QD=21.38;ReadPosRankSum=1.694;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1979,216,0
chrIV	1252563	.	C	T	1197	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=16.18;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1230,135,0
chrIV	1252564	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.942;QD=16.32;ReadPosRankSum=2.381;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1224,138,0
chrIV	1253205	.	A	G	867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.578;QD=19.27;ReadPosRankSum=1.655;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:900,99,0
chrIV	1253314	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=1.9092;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.335;QD=19.42;ReadPosRankSum=1.062;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1237,113,0
chrIV	1253334	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.71;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1193,132,0
chrIV	1253397	.	T	C	1448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=2.731;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.092;QD=21.61;ReadPosRankSum=2.376;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1481,162,0
chrIV	1253664	.	G	A	837	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.20;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:870,90,0
chrIV	1253679	.	A	G	783	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=18.21;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:816,87,0
chrIV	1253694	.	T	C	765	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.63;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:798,87,0
chrIV	1253763	.	A	G	918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.873;QD=16.11;ReadPosRankSum=2.875;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:3,54:57:99:951,105,0
chrIV	1253958	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.280;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.2407;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-0.879;QD=21.48;ReadPosRankSum=-0.377;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1515,140,0
chrIV	1254171	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.2473;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=1.540;QD=21.85;ReadPosRankSum=1.684;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1606,180,0
chrIV	1254312	.	C	T	2204	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.61;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2237,231,0
chrIV	1254372	.	C	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.89;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2024,213,0
chrIV	1254508	.	C	T	665	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=9.24;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:75:698,75,0
chrIV	1254611	.	A	G	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.516;QD=20.00;ReadPosRankSum=1.696;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1973,216,0
chrIV	1254620	.	C	T	2134	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.72;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2167,231,0
chrIV	1254714	.	G	A	1192	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=22.49;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1225,132,0
chrIV	1254735	.	G	A	786	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=20.68;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:819,87,0
chrIV	1254750	.	A	G	472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=34;Dels=0.00;FS=7.404;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;MQRankSum=-0.053;QD=13.88;ReadPosRankSum=1.313;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:1,32:34:57:505,57,0
chrIV	1254757	.	A	C	421	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=15.04;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:51:454,51,0
chrIV	1254809	.	G	A	609	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=16.46;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:69:642,69,0
chrIV	1254831	.	A	G	821	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.3053;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.403;QD=19.09;ReadPosRankSum=0.330;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,41:43:93:854,93,0
chrIV	1254881	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.41;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1446,156,0
chrIV	1254929	.	C	T	2600	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.53;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2633,270,0
chrIV	1254967	.	C	T	2662	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.60;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2695,285,0
chrIV	1255067	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=21.44;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1062,114,0
chrIV	1255105	.	A	C	735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.324;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=-0.040;QD=17.09;ReadPosRankSum=1.652;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:84:768,84,0
chrIV	1255110	.	T	C	718	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.654;QD=15.96;ReadPosRankSum=1.655;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:84:751,84,0
chrIV	1255180	.	A	C	1049	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=18.40;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1082,120,0
chrIV	1255294	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.68;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1903,210,0
chrIV	1255345	.	C	T	1760	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.78;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1793,186,0
chrIV	1255417	.	G	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1637;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.35;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1681,174,0
chrIV	1255457	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.617;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-1.632;QD=19.87;ReadPosRankSum=1.682;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1424,156,0
chrIV	1255467	.	A	G	1242	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.36;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1275,141,0
chrIV	1255570	.	C	T	1973	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.66;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2006,210,0
chrIV	1255633	.	A	G	1890	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=23.05;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1923,207,0
chrIV	1255666	.	A	G	1833	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=19.92;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,89:92:99:1866,204,0
chrIV	1255684	.	T	G	1973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=2.3656;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.258;QD=20.77;ReadPosRankSum=1.695;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2006,210,0
chrIV	1255983	.	G	A	2038	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.64;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2071,216,0
chrIV	1256225	.	C	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.35;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:2067,228,0
chrIV	1256476	.	G	A	2170	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.59;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2203,231,0
chrIV	1256575	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.84;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1638,171,0
chrIV	1256608	.	G	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.81;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1298,138,0
chrIV	1256650	.	A	G	1383	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.64;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1416,153,0
chrIV	1256876	.	T	A	1020	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.62;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1053,111,0
chrIV	1257111	.	T	C	835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.559;QD=20.87;ReadPosRankSum=1.559;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:93:868,93,0
chrIV	1257154	.	A	G	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.676;QD=22.81;ReadPosRankSum=1.676;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1447,159,0
chrIV	1257209	.	C	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.75;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1672,174,0
chrIV	1257293	.	C	T	1844	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.95;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1877,198,0
chrIV	1257343	.	G	A	1865	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=6.8233;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.22;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1898,198,0
chrIV	1257459	.	A	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.55;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1175,126,0
chrIV	1257671	.	G	A	2090	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.55;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2123,231,0
chrIV	1258096	.	T	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.32;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1463,156,0
chrIV	1258264	.	A	G	1212	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.24;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1245,135,0
chrIV	1258657	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=3.057;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.283;QD=22.12;ReadPosRankSum=2.383;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1670,180,0
chrIV	1258685	.	T	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.99;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1594,174,0
chrIV	1258923	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.15;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1767,192,0
chrIV	1258968	.	C	T	1549	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.12;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1582,171,0
chrIV	1259058	.	C	T	1146	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.10;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1179,126,0
chrIV	1259604	.	G	A	1721	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=24.24;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1754,180,0
chrIV	1259648	.	G	A	1660	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.78;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1693,174,0
chrIV	1259700	.	T	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.64;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1851,201,0
chrIV	1259896	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2179;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.093;QD=20.14;ReadPosRankSum=1.519;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1362,147,0
chrIV	1259960	.	A	T	1154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.937;QD=18.92;ReadPosRankSum=1.675;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1187,129,0
chrIV	1259970	.	G	C	923	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=17.42;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:956,102,0
chrIV	1259982	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=17.83;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1067,117,0
chrIV	1260022	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=17.39;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1494,156,0
chrIV	1260032	.	T	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=15.38;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1279,141,0
chrIV	1260055	.	A	G	1645	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=16.45;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1678,189,0
chrIV	1260078	.	G	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.66;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1764,183,0
chrIV	1260837	.	C	T	1841	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.73;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1874,195,0
chrIV	1260996	.	G	A	1074	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.37;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1107,114,0
chrIV	1261060	.	T	C	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.782;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;MQRankSum=0.685;QD=23.12;ReadPosRankSum=1.652;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:1027,111,0
chrIV	1261089	.	A	G	1274	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=23.16;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1307,138,0
chrIV	1261102	.	A	C	1299	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=21.30;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1332,147,0
chrIV	1261151	.	C	T	1291	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.49;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1324,144,0
chrIV	1261386	.	A	G	1777	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=77;Dels=0.01;FS=11.645;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.904;QD=23.08;ReadPosRankSum=2.384;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1810,195,0
chrIV	1261418	.	T	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=52.9667;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=16.89;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1080,114,0
chrIV	1261452	.	G	A	1270	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=15.68;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1303,141,0
chrIV	1262238	.	A	G	1674	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1707,186,0
chrIV	1262394	.	T	C	1706	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8631;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.32;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1739,192,0
chrIV	1262787	.	C	T	1302	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.60;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1335,144,0
chrIV	1263265	.	T	G	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.593;QD=20.47;ReadPosRankSum=1.685;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1527,159,0
chrIV	1263569	.	C	T	2008	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.35;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2041,213,0
chrIV	1263594	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=22.03;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1773,192,0
chrIV	1263611	.	T	C	1451	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.73;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1484,162,0
chrIV	1263962	.	C	T	2517	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.68;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2550,267,0
chrIV	1264283	.	T	C	2767	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.65;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,132:134:99:2800,300,0
chrIV	1264448	.	C	T	1306	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.89;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1339,147,0
chrIV	1264454	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.89;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1536,168,0
chrIV	1264751	.	G	A	2748	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=23.69;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2781,291,0
chrIV	1264820	.	C	T	2968	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.1895;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.66;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:3001,321,0
chrIV	1264874	.	T	C	2029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1301;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-0.253;QD=19.70;ReadPosRankSum=2.305;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:2,100:103:99:2062,228,0
chrIV	1264886	.	T	C	1779	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=17.11;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,101:104:99:1812,198,0
chrIV	1264892	.	C	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=17.01;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1683,183,0
chrIV	1264956	.	T	C	1857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=3.150;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.222;QD=19.34;ReadPosRankSum=0.456;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:1890,204,0
chrIV	1265205	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.30;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1738,177,0
chrIV	1265705	.	T	C	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=7.030;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-2.292;QD=20.79;ReadPosRankSum=2.387;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1655,183,0
chrIV	1266174	.	A	C	2550	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.18;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2583,285,0
chrIV	1266546	.	T	C	1650	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9675;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.12;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1683,183,0
chrIV	1266570	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.41;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1746,195,0
chrIV	1266696	.	G	A	1494	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.91;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1527,165,0
chrIV	1267101	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.5654;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.41;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1082,111,0
chrIV	1267740	.	A	G	1901	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.44;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1934,216,0
chrIV	1267782	.	T	A	2203	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.0216;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.99;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2236,234,0
chrIV	1267989	.	A	T	1197	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=3.736;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.199;QD=22.58;ReadPosRankSum=1.599;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1230,129,0
chrIV	1268154	.	T	C	1016	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=22.58;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1049,117,0
chrIV	1268315	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.96;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1319,141,0
chrIV	1268647	.	C	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.68;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1588,165,0
chrIV	1268901	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.15;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1062,114,0
chrIV	1269577	.	C	T	661	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.36;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:694,72,0
chrIV	1269708	.	A	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=13.6028;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=15.32;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:87:99:1366,153,0
chrIV	1269967	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.97;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1311,144,0
chrIV	1269974	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.93;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1189,123,0
chrIV	1270566	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6568;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.54;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1775,198,0
chrIV	1270902	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.328;QD=20.82;ReadPosRankSum=1.639;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1574,171,0
chrIV	1270997	.	A	G	1844	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=83;Dels=0.00;FS=6.180;HaplotypeScore=13.4036;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.490;QD=22.22;ReadPosRankSum=2.361;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1877,204,0
chrIV	1271068	.	T	A	2557	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.12;SB=-1.327e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2590,273,0
chrIV	1271410	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.46;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1471,153,0
chrIV	1271701	.	T	A	2081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=3.565;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.109;QD=20.40;ReadPosRankSum=1.697;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2114,231,0
chrIV	1271755	.	G	C	1165	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.20;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1198,132,0
chrIV	1271758	.	G	A	1229	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.20;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1262,132,0
chrIV	1271812	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.14;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1181,123,0
chrIV	1271999	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.982;QD=21.72;ReadPosRankSum=1.675;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1336,144,0
chrIV	1272092	.	C	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.40;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1158,120,0
chrIV	1272164	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.19;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1654,171,0
chrIV	1272748	.	T	C	2129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.518;QD=21.95;ReadPosRankSum=1.696;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2162,234,0
chrIV	1273219	.	A	T	1643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.537;QD=23.14;ReadPosRankSum=1.683;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1676,174,0
chrIV	1273337	.	A	G	1382	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.388;QD=20.32;ReadPosRankSum=1.681;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1415,153,0
chrIV	1273367	.	C	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.42;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1381,144,0
chrIV	1274423	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.8790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1838,204,0
chrIV	1274484	.	G	A	1777	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=13.8024;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.97;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1810,192,0
chrIV	1274565	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.29;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1727,183,0
chrIV	1274635	.	G	A	1061	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.65;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1094,114,0
chrIV	1274840	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.34;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1396,153,0
chrIV	1274867	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.76;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1404,150,0
chrIV	1275042	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.33;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1375,147,0
chrIV	1275068	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.22;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1145,126,0
chrIV	1275069	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=3.502;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-1.732;QD=20.42;ReadPosRankSum=1.670;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1197,129,0
chrIV	1275092	.	T	C	1436	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.43;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1469,159,0
chrIV	1275195	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.47;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1224,135,0
chrIV	1275729	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.41;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1392,150,0
chrIV	1275778	.	C	G	1494	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.75;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1527,165,0
chrIV	1276349	.	T	A	2336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=101;Dels=0.00;FS=3.231;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.806;QD=23.13;ReadPosRankSum=1.698;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2369,246,0
chrIV	1276608	.	A	G	2564	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.42;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2597,285,0
chrIV	1276717	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.10;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1771,189,0
chrIV	1277116	.	G	A	1994	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.8840;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.67;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2027,213,0
chrIV	1277231	.	C	A	2264	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.34;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2297,240,0
chrIV	1277282	.	G	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.06;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1509,156,0
chrIV	1277377	.	A	T	1043	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1076,111,0
chrIV	1278468	.	C	T	725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.938;QD=15.10;ReadPosRankSum=1.660;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:84:758,84,0
chrIV	1278481	.	C	G	704	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=13.28;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:81:737,81,0
chrIV	1278613	.	A	C	1888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=97;Dels=0.00;FS=11.137;HaplotypeScore=10.2439;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.064;QD=19.46;ReadPosRankSum=2.398;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:2,94:97:99:1921,216,0
chrIV	1278630	.	C	T	2098	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5471;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.08;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2131,222,0
chrIV	1279037	.	A	G	2039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-1.379;QD=20.81;ReadPosRankSum=1.697;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2072,228,0
chrIV	1279148	.	A	G	2901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=3.032;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.191;QD=22.84;ReadPosRankSum=2.411;SB=-1.622e+03	GT:AD:DP:GQ:PL	1/1:2,125:127:99:2934,321,0
chrIV	1279313	.	G	A	695	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.78;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:78:728,78,0
chrIV	1279416	.	C	T	684	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=55.1618;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=0;QD=10.69;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:78:717,78,0
chrIV	1279680	.	A	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.28;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1325,144,0
chrIV	1279875	.	G	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.29;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1415,147,0
chrIV	1280061	.	T	G	1102	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.33;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1135,126,0
chrIV	1280073	.	G	C	991	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.06;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1024,111,0
chrIV	1280121	.	G	A	1022	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.65;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1055,111,0
chrIV	1280562	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.92;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1523,162,0
chrIV	1280606	.	G	A	1406	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.63;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1439,150,0
chrIV	1281066	.	G	A	1483	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1516,156,0
chrIV	1281225	.	A	G	2640	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6734;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.36;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2673,297,0
chrIV	1281471	.	A	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.58;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1328,138,0
chrIV	1281774	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.80;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1319,141,0
chrIV	1281813	.	C	T	1181	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.62;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1214,126,0
chrIV	1281842	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.08;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1141,117,0
chrIV	1281900	.	A	C	988	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.48;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1021,114,0
chrIV	1281969	.	G	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.82;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1516,162,0
chrIV	1282243	.	C	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.51;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1216,126,0
chrIV	1282320	.	T	C	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.296;QD=22.46;ReadPosRankSum=1.648;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:99:954,105,0
chrIV	1282344	.	T	G	833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.3033;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.310;QD=20.32;ReadPosRankSum=0.803;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:96:866,96,0
chrIV	1282929	.	C	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.3719;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.56;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1706,183,0
chrIV	1283387	.	T	C	2059	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.39;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2092,225,0
chrIV	1283592	.	G	A	710	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.14;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:743,78,0
chrIV	1283634	.	C	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.40;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1158,129,0
chrIV	1283766	.	G	T	683	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=15.52;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:81:716,81,0
chrIV	1283911	.	C	A	810	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=22.50;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:93:843,93,0
chrIV	1283930	.	C	A	661	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=21.32;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:72:694,72,0
chrIV	1283956	.	A	G	498	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=18.44;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:57:531,57,0
chrIV	1283961	.	A	C	490	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=18.15;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:57:523,57,0
chrIV	1283969	.	C	T	507	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=16.35;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:540,57,0
chrIV	1284111	.	T	A	996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.333;QD=24.29;ReadPosRankSum=2.209;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:2,39:41:99:1029,114,0
chrIV	1284296	.	T	C	1209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-0.898;QD=22.39;ReadPosRankSum=1.668;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1242,135,0
chrIV	1284600	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.36;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1311,138,0
chrIV	1284927	.	C	T	1888	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.60;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1921,201,0
chrIV	1285035	.	G	A	2259	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.9117;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.37;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2292,240,0
chrIV	1285104	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.313;QD=22.57;ReadPosRankSum=1.690;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1906,210,0
chrIV	1285139	.	A	C	1836	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.39;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1869,204,0
chrIV	1285416	.	A	G	1517	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.96;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1550,168,0
chrIV	1285752	.	A	T	2074	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.84;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2107,225,0
chrIV	1285791	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.79;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1902,207,0
chrIV	1285878	.	T	C	1618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=3.002;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.095;QD=22.79;ReadPosRankSum=2.346;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1651,177,0
chrIV	1286096	.	G	A	2159	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.96;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2192,231,0
chrIV	1286166	.	G	A	1992	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.65;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2025,204,0
chrIV	1286229	.	G	T	1387	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.02;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1420,147,0
chrIV	1286595	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.301;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.396;QD=20.75;ReadPosRankSum=1.633;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1506,168,0
chrIV	1286766	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2312,255,0
chrIV	1286913	.	A	G	1282	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.3827;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.03;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1315,141,0
chrIV	1286949	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.0336;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.47;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1201,129,0
chrIV	1287125	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.81;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1519,165,0
chrIV	1287143	.	T	G	1316	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=4.881;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.043;QD=16.25;ReadPosRankSum=1.646;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1349,147,0
chrIV	1287249	.	T	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.8469;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.81;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1406,147,0
chrIV	1287530	.	C	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.04;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1464,159,0
chrIV	1287842	.	T	C	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=2.685;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=1.421;QD=21.51;ReadPosRankSum=2.369;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1990,219,0
chrIV	1287873	.	T	C	1813	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.84;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1846,204,0
chrIV	1288090	.	C	T	1837	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.74;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1870,201,0
chrIV	1288413	.	C	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3337;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.03;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1175,126,0
chrIV	1288814	.	G	C	1523	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.07;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1556,168,0
chrIV	1289166	.	T	C	1801	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.70;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1834,198,0
chrIV	1289195	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=9.1701;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.81;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1635,171,0
chrIV	1289885	.	T	A	847	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.70;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:880,93,0
chrIV	1289939	.	A	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5866;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.83;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1282,138,0
chrIV	1289972	.	C	T	1525	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.18;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1558,165,0
chrIV	1290044	.	A	G	1336	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1369,147,0
chrIV	1290308	.	G	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.91;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1567,165,0
chrIV	1290722	.	G	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.04;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1283,135,0
chrIV	1291009	.	A	G	457	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.58;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:54:490,54,0
chrIV	1291676	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.90;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1496,159,0
chrIV	1292515	.	G	C	1905	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6010;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.42;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1938,213,0
chrIV	1295438	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.97;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1513,162,0
chrIV	1295451	.	A	G	1626	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4284;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=18.48;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1659,180,0
chrIV	1295582	.	T	G	2077	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.86;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2110,219,0
chrIV	1295980	.	C	T	2096	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.06;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2129,222,0
chrIV	1296035	.	G	A	2008	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.69;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2041,210,0
chrIV	1296045	.	T	A	2129	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.41;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2162,225,0
chrIV	1296225	.	C	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.54;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1746,180,0
chrIV	1296388	.	A	T	1695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.535;QD=20.67;ReadPosRankSum=1.689;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1728,180,0
chrIV	1296732	.	C	A	188.03	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=14.46;SB=-3.228e-02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:221,24,0
chrIV	1297070	.	T	A	581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.545;QD=16.60;ReadPosRankSum=1.634;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:69:614,69,0
chrIV	1297076	.	T	C	670	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.61;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:703,75,0
chrIV	1297136	.	G	A	443	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=13.42;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:51:476,51,0
chrIV	1297562	.	G	C	1702	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.82;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1735,189,0
chrIV	1297645	.	T	C	1243	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.26;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1276,141,0
chrIV	1297796	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.15;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1606,177,0
chrIV	1297890	.	G	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.18;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1789,189,0
chrIV	1297994	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.26;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1436,156,0
chrIV	1298024	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.173;QD=21.81;ReadPosRankSum=1.676;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1385,147,0
chrIV	1298054	.	C	T	1346	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.71;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1379,141,0
chrIV	1298162	.	A	C	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=3.183;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.237;QD=19.30;ReadPosRankSum=1.642;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1558,168,0
chrIV	1298210	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.291;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.397;QD=17.12;ReadPosRankSum=1.660;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1677,183,0
chrIV	1298219	.	T	C	1493	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.05;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1526,168,0
chrIV	1298290	.	A	G	2105	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.64;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2138,231,0
chrIV	1298337	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.244;QD=21.85;ReadPosRankSum=1.688;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1759,189,0
chrIV	1298424	.	T	A	1723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=73;Dels=0.00;FS=5.659;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.125;QD=23.60;ReadPosRankSum=2.904;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1756,180,0
chrIV	1298594	.	A	C	1646	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=21.38;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1679,183,0
chrIV	1298614	.	T	C	1663	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=20.53;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1696,189,0
chrIV	1298688	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.59;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1592,171,0
chrIV	1298829	.	C	A	1807	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.59;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1840,192,0
chrIV	1298872	.	T	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.48;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1673,183,0
chrIV	1298950	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.130;DP=78;Dels=0.00;FS=2.978;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.849;QD=17.59;ReadPosRankSum=2.322;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1405,150,0
chrIV	1298958	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.68;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1470,156,0
chrIV	1299016	.	T	C	866	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=15.19;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:899,99,0
chrIV	1299032	.	A	G	847	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.41;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:880,96,0
chrIV	1299052	.	T	C	754	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.95;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:787,87,0
chrIV	1299086	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.60;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1125,123,0
chrIV	1299137	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.72;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1622,177,0
chrIV	1299173	.	G	A	1713	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6712;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.64;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1746,186,0
chrIV	1299214	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=71;Dels=0.00;FS=7.279;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.268;QD=21.21;ReadPosRankSum=2.381;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1539,168,0
chrIV	1299598	.	C	T	1655	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.31;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1688,180,0
chrIV	1299807	.	G	C	1156	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5472;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.27;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1189,129,0
chrIV	1300045	.	A	C	1986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=91;Dels=0.00;FS=8.800;HaplotypeScore=7.6284;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.738;QD=21.82;ReadPosRankSum=2.395;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:2,88:91:99:2019,219,0
chrIV	1300146	.	T	C	1998	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3911;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.67;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2031,225,0
chrIV	1300226	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.49;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1309,144,0
chrIV	1300388	.	A	G	2759	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=127;Dels=0.00;FS=2.926;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.687;QD=21.72;ReadPosRankSum=2.411;SB=-1.432e+03	GT:AD:DP:GQ:PL	1/1:2,125:127:99:2792,303,0
chrIV	1300456	.	G	A	2320	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.0224;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.75;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2353,243,0
chrIV	1300582	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.19;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1103,114,0
chrIV	1300834	.	G	A	2632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.8974;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.015;QD=22.89;ReadPosRankSum=-1.310;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2665,291,0
chrIV	1300956	.	C	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.58;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1673,174,0
chrIV	1301095	.	C	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.67;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2005,216,0
chrIV	1301230	.	A	G	3401.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.176;DP=146;Dels=0.00;FS=3.033;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.009;QD=23.29;ReadPosRankSum=2.381;SB=-1.878e+03	GT:AD:DP:GQ:PL	1/1:2,142:146:99:3401,366,0
chrIV	1301390	.	T	C	986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.502;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.247;QD=17.61;ReadPosRankSum=1.670;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1019,111,0
chrIV	1301405	.	A	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.74;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1176,126,0
chrIV	1301474	.	C	T	2065	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.30;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2098,216,0
chrIV	1302363	.	C	T	2263	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.41;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2296,237,0
chrIV	1302530	.	T	C	3050	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=22.26;SB=-1.746e+03	GT:AD:DP:GQ:PL	1/1:0,136:137:99:3083,333,0
chrIV	1302742	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=17.05;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:1806,201,0
chrIV	1302751	.	T	C	1965	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=21.36;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1998,219,0
chrIV	1302775	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;MQRankSum=-2.247;QD=18.53;ReadPosRankSum=2.382;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1386,150,0
chrIV	1302786	.	G	A	938	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.98;MQ0=0;QD=15.13;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:971,105,0
chrIV	1302793	.	C	A	784	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;QD=14.25;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:817,90,0
chrIV	1302811	.	G	A	663	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=13.26;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:75:696,75,0
chrIV	1302821	.	C	T	586	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=12.21;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:69:619,69,0
chrIV	1302868	.	G	A	932	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=19.02;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:965,102,0
chrIV	1302894	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.78;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1340,144,0
chrIV	1302919	.	C	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.42;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1554,159,0
chrIV	1303028	.	T	C	1688	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.92;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1721,192,0
chrIV	1303036	.	A	G	1651	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.62;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1684,186,0
chrIV	1303037	.	A	G	1605	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=22.61;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1638,174,0
chrIV	1303170	.	A	G	908	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=14.65;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:941,111,0
chrIV	1303171	.	A	C	875	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=2.987;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=0.952;QD=14.34;ReadPosRankSum=2.207;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:908,108,0
chrIV	1303172	.	G	T	938	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=15.38;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:971,114,0
chrIV	1303188	.	T	C	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.191;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;MQRankSum=-1.622;QD=17.78;ReadPosRankSum=1.677;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1153,126,0
chrIV	1303306	.	T	C	2138	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6700;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.02;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2171,234,0
chrIV	1303572	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.83;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1272,129,0
chrIV	1303713	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.26;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1545,162,0
chrIV	1304226	.	G	A	1656	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.35;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1689,174,0
chrIV	1304580	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.05;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1937,201,0
chrIV	1304682	.	T	C	2720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=123;Dels=0.00;FS=6.117;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.437;QD=22.11;ReadPosRankSum=2.673;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:3,117:123:99:2753,283,0
chrIV	1304837	.	A	G	1033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=50;Dels=0.00;FS=5.947;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.899;QD=20.66;ReadPosRankSum=2.860;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:3,47:50:99:1066,117,0
chrIV	1304961	.	A	G	1742	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0653;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.74;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1775,195,0
chrIV	1305124	.	A	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1945,201,0
chrIV	1305228	.	G	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.65;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1901,207,0
chrIV	1305302	.	A	G	3110	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.4190;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.08;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3143,336,0
chrIV	1305372	.	C	T	2773	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.54;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2806,297,0
chrIV	1305496	.	A	G	2692	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.61;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2725,297,0
chrIV	1305532	.	A	G	2930	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.71;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2963,324,0
chrIV	1305600	.	T	C	2590	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.98;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2623,282,0
chrIV	1305778	.	T	C	1817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;MQRankSum=0.371;QD=21.38;ReadPosRankSum=1.691;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1850,201,0
chrIV	1306195	.	T	G	1751	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7616;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.89;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1784,192,0
chrIV	1306509	.	G	T	1364	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.77;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1397,147,0
chrIV	1306661	.	A	C	1735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.545;QD=23.45;ReadPosRankSum=1.685;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1768,192,0
chrIV	1306774	.	T	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.64;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1468,156,0
chrIV	1306792	.	A	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.21;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1453,153,0
chrIV	1306911	.	C	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.79;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1188,123,0
chrIV	1306979	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.40;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1198,129,0
chrIV	1307338	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=21.17;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1430,150,0
chrIV	1307587	.	G	A	1909	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=22.73;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1942,210,0
chrIV	1307627	.	T	C	972	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=65;Dels=0.00;FS=6.522;HaplotypeScore=13.5344;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;MQRankSum=1.274;QD=14.95;ReadPosRankSum=2.215;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:2,61:65:99:1005,114,0
chrIV	1307631	.	C	T	793	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=11.8791;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=12.39;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:90:826,90,0
chrIV	1307633	.	T	C	427.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=65;Dels=0.00;FS=11.673;HaplotypeScore=10.8844;MLEAC=1;MLEAF=0.500;MQ=30.61;MQ0=0;MQRankSum=-1.189;QD=6.57;ReadPosRankSum=3.960;SB=-3.140e+02	GT:AD:DP:GQ:PL	0/1:31,34:65:99:457,0,134
chrIV	1307646	.	G	A	142.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.681;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=30.69;MQ0=0;MQRankSum=-0.923;QD=1.73;ReadPosRankSum=1.798;SB=-8.901e+01	GT:AD:DP:GQ:PL	0/1:62,20:82:99:172,0,725
chrIV	1307667	.	G	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=14.10;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,90:98:99:1443,162,0
chrIV	1307706	.	A	T	339.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;DP=148;Dels=0.00;FS=10.317;HaplotypeScore=12.9362;MLEAC=1;MLEAF=0.500;MQ=31.18;MQ0=1;MQRankSum=-3.727;QD=2.29;ReadPosRankSum=-2.040;SB=-3.270e+02	GT:AD:DP:GQ:PL	0/1:85,63:148:99:369,0,1556
chrIV	1307711	.	T	C	303.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;DP=148;Dels=0.00;FS=21.377;HaplotypeScore=16.2781;MLEAC=1;MLEAF=0.500;MQ=30.84;MQ0=1;MQRankSum=-4.252;QD=2.05;ReadPosRankSum=-2.450;SB=-3.780e+02	GT:AD:DP:GQ:PL	0/1:78,70:148:99:333,0,1392
chrIV	1307715	.	C	T	2278	SnpCluster	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=13.6676;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=2;QD=16.04;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:2311,252,0
chrIV	1307717	.	T	C	322.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.345;DP=144;Dels=0.00;FS=26.825;HaplotypeScore=6.4942;MLEAC=1;MLEAF=0.500;MQ=30.58;MQ0=3;MQRankSum=-4.019;QD=2.24;ReadPosRankSum=-0.577;SB=-3.610e+02	GT:AD:DP:GQ:PL	0/1:78,66:144:99:352,0,1380
chrIV	1307748	.	A	T	80.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DP=144;Dels=0.00;FS=36.847;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=11;MQRankSum=-3.394;QD=0.56;ReadPosRankSum=3.086;SB=-1.150e+02	GT:AD:DP:GQ:PL	0/1:105,39:144:99:110,0,913
chrIV	1307759	.	C	T	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DP=142;Dels=0.00;FS=13.086;HaplotypeScore=13.6135;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=12;MQRankSum=1.246;QD=0.34;ReadPosRankSum=4.969;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:131,11:142:78:78,0,899
chrIV	1307764	.	A	G	139.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.285;DP=141;Dels=0.00;FS=25.243;HaplotypeScore=47.8413;MLEAC=1;MLEAF=0.500;MQ=26.00;MQ0=12;MQRankSum=-1.275;QD=0.99;ReadPosRankSum=2.280;SB=-2.660e+02	GT:AD:DP:GQ:PL	0/1:82,59:141:99:169,0,508
chrIV	1307772	.	A	G	149.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;DP=138;Dels=0.00;FS=49.608;HaplotypeScore=21.9423;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=14;MQRankSum=-1.790;QD=1.08;ReadPosRankSum=3.051;SB=-1.510e+02	GT:AD:DP:GQ:PL	0/1:103,34:138:99:179,0,439
chrIV	1307793	.	G	T	134.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.233;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=45.2164;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=13;MQRankSum=1.569;QD=1.31;ReadPosRankSum=-3.607;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,11:102:99:164,0,165
chrIV	1307796	.	A	T	133.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;DP=102;Dels=0.00;FS=3.526;HaplotypeScore=56.4119;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=13;MQRankSum=1.893;QD=1.30;ReadPosRankSum=-3.672;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,11:102:99:163,0,210
chrIV	1307797	.	C	T	134.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.192;DP=102;Dels=0.00;FS=3.526;HaplotypeScore=56.4119;MLEAC=1;MLEAF=0.500;MQ=20.83;MQ0=13;MQRankSum=2.094;QD=1.31;ReadPosRankSum=-3.684;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,11:102:99:164,0,207
chrIV	1307804	.	C	T	134.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DP=96;Dels=0.00;FS=1.679;HaplotypeScore=34.8998;MLEAC=1;MLEAF=0.500;MQ=21.16;MQ0=13;MQRankSum=1.578;QD=1.40;ReadPosRankSum=-4.667;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,11:96:99:164,0,163
chrIV	1307835	.	G	T	72.51	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=4;QD=2.07;SB=-1.045e+02	GT:AD:DP:GQ:PL	1/1:0,19:35:12:105,12,0
chrIV	1307848	.	A	G	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.399;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=12.5215;MLEAC=2;MLEAF=1.00;MQ=18.80;MQ0=6;MQRankSum=3.788;QD=0.83;ReadPosRankSum=-1.263;SB=-8.551e+01	GT:AD:DP:GQ:PL	1/1:21,8:30:6:56,6,0
chrIV	1307874	.	A	T	139.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;DP=76;Dels=0.00;FS=80.311;HaplotypeScore=19.9635;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=5;MQRankSum=3.689;QD=1.83;ReadPosRankSum=-3.944;SB=-2.184e+01	GT:AD:DP:GQ:PL	0/1:31,44:76:99:169,0,136
chrIV	1307877	.	G	A	297.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;DP=84;Dels=0.00;FS=56.893;HaplotypeScore=39.0542;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=5;MQRankSum=5.033;QD=3.54;ReadPosRankSum=-3.322;SB=-1.012e+02	GT:AD:DP:GQ:PL	0/1:20,63:84:11:327,0,11
chrIV	1307885	.	T	C	207.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;DP=106;Dels=0.00;FS=44.358;HaplotypeScore=17.7412;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=7;MQRankSum=2.980;QD=1.95;ReadPosRankSum=-0.563;SB=-5.795e+01	GT:AD:DP:GQ:PL	0/1:32,74:106:99:237,0,120
chrIV	1307916	.	A	T	407.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;DP=165;Dels=0.00;FS=14.984;HaplotypeScore=10.2643;MLEAC=1;MLEAF=0.500;MQ=26.03;MQ0=32;MQRankSum=-0.575;QD=2.47;ReadPosRankSum=2.370;SB=-1.060e+02	GT:AD:DP:GQ:PL	0/1:65,99:165:83:437,0,83
chrIV	1307932	.	A	G	348.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;DP=184;Dels=0.00;FS=7.464;HaplotypeScore=23.6557;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=32;MQRankSum=0.706;QD=1.89;ReadPosRankSum=2.379;SB=-1.500e+02	GT:AD:DP:GQ:PL	0/1:104,80:184:99:378,0,261
chrIV	1307940	.	A	G	313.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;DP=186;Dels=0.00;FS=15.235;HaplotypeScore=17.0101;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=34;MQRankSum=3.022;QD=1.68;ReadPosRankSum=0.835;SB=-7.801e+01	GT:AD:DP:GQ:PL	0/1:120,66:186:99:343,0,338
chrIV	1307958	.	A	T	112.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;DP=175;Dels=0.00;FS=59.900;HaplotypeScore=27.1682;MLEAC=1;MLEAF=0.500;MQ=24.51;MQ0=34;MQRankSum=2.771;QD=0.64;ReadPosRankSum=-1.129;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:130,45:175:99:142,0,710
chrIV	1307961	.	G	A	153.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.183;DP=172;Dels=0.00;FS=15.542;HaplotypeScore=50.6392;MLEAC=1;MLEAF=0.500;MQ=24.02;MQ0=34;MQRankSum=1.292;QD=0.89;ReadPosRankSum=1.160;SB=-1.101e+01	GT:AD:DP:GQ:PL	0/1:116,52:172:99:183,0,590
chrIV	1308000	.	A	T	558.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DP=119;Dels=0.00;FS=13.490;HaplotypeScore=17.9704;MLEAC=1;MLEAF=0.500;MQ=25.67;MQ0=7;MQRankSum=1.393;QD=4.69;ReadPosRankSum=2.578;SB=-1.610e+02	GT:AD:DP:GQ:PL	0/1:29,90:119:99:588,0,110
chrIV	1308003	.	A	T	16.11	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=117;Dels=0.00;FS=4.163;HaplotypeScore=20.3364;MLEAC=1;MLEAF=0.500;MQ=25.88;MQ0=5;MQRankSum=1.435;QD=0.14;ReadPosRankSum=-0.607;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:100,17:117:46:46,0,622
chrIV	1308006	.	A	T	17.09	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.538;DP=100;Dels=0.00;FS=8.811;HaplotypeScore=13.6716;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=4;MQRankSum=1.988;QD=0.17;ReadPosRankSum=-1.822;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,16:100:47:47,0,606
chrIV	1308016	.	A	G	636	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0911;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=1;QD=9.49;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:84:669,84,0
chrIV	1308024	.	A	G	479	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;DP=54;Dels=0.00;FS=5.347;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;MQRankSum=-2.664;QD=8.87;ReadPosRankSum=3.093;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:4,46:54:63:512,63,0
chrIV	1308042	.	A	T	66.42	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;DP=31;Dels=0.00;FS=27.915;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.78;MQ0=5;MQRankSum=-1.401;QD=2.14;ReadPosRankSum=1.779;SB=-1.636e+01	GT:AD:DP:GQ:PL	0/1:22,9:31:7:96,0,7
chrIV	1308045	.	G	A	44.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.81;MQ0=6;QD=3.75;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,10:12:9:77,9,0
chrIV	1308047	.	T	C	42.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.81;MQ0=6;MQRankSum=0.736;QD=3.58;ReadPosRankSum=0.736;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:7,5:12:9:75,9,0
chrIV	1308053	.	T	C	64.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.474;DP=21;Dels=0.00;FS=7.404;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=16.40;MQ0=10;MQRankSum=1.107;QD=3.07;ReadPosRankSum=0.791;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:10,11:21:12:97,12,0
chrIV	1308084	.	A	T	87.26	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.92;MQ0=23;QD=2.30;SB=-9.326e+01	GT:AD:DP:GQ:PL	1/1:20,18:38:15:120,15,0
chrIV	1308100	.	A	G	51.42	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=14.42;MQ0=24;MQRankSum=0.503;QD=1.20;ReadPosRankSum=1.621;SB=-1.129e+02	GT:AD:DP:GQ:PL	0/1:24,19:43:7:81,0,7
chrIV	1308108	.	A	G	32.22	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.35;MQ0=24;MQRankSum=0.948;QD=0.77;ReadPosRankSum=1.540;SB=-8.716e+01	GT:AD:DP:GQ:PL	0/1:24,18:42:10:62,0,10
chrIV	1308210	.	A	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.653;DP=27;Dels=0.00;FS=6.410;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.47;MQ0=6;MQRankSum=2.161;QD=0.84;ReadPosRankSum=1.759;SB=-7.374e+01	GT:AD:DP:GQ:PL	1/1:9,18:27:6:54,6,0
chrIV	1308215	.	T	C	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.896;DP=23;Dels=0.00;FS=6.864;HaplotypeScore=3.4407;MLEAC=2;MLEAF=1.00;MQ=20.32;MQ0=5;MQRankSum=1.896;QD=0.95;ReadPosRankSum=2.369;SB=-6.674e+01	GT:AD:DP:GQ:PL	1/1:8,15:23:6:53,6,0
chrIV	1308219	.	C	T	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=5;QD=0.99;SB=-6.676e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:6:53,6,0
chrIV	1308221	.	T	C	23.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.736;DP=22;Dels=0.00;FS=15.315;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=5;MQRankSum=2.548;QD=1.08;ReadPosRankSum=2.661;SB=-4.476e+01	GT:AD:DP:GQ:PL	1/1:9,13:22:6:55,6,0
chrIV	1308294	.	A	T	49.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.673;DP=21;Dels=0.00;FS=16.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=5;MQRankSum=1.749;QD=2.38;ReadPosRankSum=2.422;SB=-1.900e-01	GT:AD:DP:GQ:PL	1/1:7,14:21:9:82,9,0
chrIV	1308299	.	T	C	49.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=17;Dels=0.00;FS=12.041;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=1;MQRankSum=1.519;QD=2.94;ReadPosRankSum=1.085;SB=-9.815e-01	GT:AD:DP:GQ:PL	1/1:1,16:17:9:82,9,0
chrIV	1308303	.	C	T	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.2019;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=1;QD=1.52;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,17:17:6:57,6,0
chrIV	1308305	.	T	C	52.97	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=18;Dels=0.00;FS=12.041;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=26.52;MQ0=2;MQRankSum=1.519;QD=2.94;ReadPosRankSum=1.085;SB=-9.813e-01	GT:AD:DP:GQ:PL	1/1:2,16:18:9:85,9,0
chrIV	1308336	.	A	T	81.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.901;DP=31;Dels=0.00;FS=10.969;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=6;MQRankSum=1.456;QD=2.63;ReadPosRankSum=-0.069;SB=-2.252e+01	GT:AD:DP:GQ:PL	1/1:5,26:31:12:114,12,0
chrIV	1308360	.	A	G	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.794;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=20.75;MQ0=6;MQRankSum=2.836;QD=0.78;ReadPosRankSum=0.693;SB=-6.692e-03	GT:AD:DP:GQ:PL	0/1:31,9:40:41:61,0,41
chrIV	1308378	.	A	T	78.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.01;MQ0=5;MQRankSum=4.475;QD=1.47;ReadPosRankSum=-1.258;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:34,19:53:65:108,0,65
chrIV	1308381	.	G	A	87.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=5;MQRankSum=4.432;QD=1.67;ReadPosRankSum=-1.105;SB=-6.692e-03	GT:AD:DP:GQ:PL	0/1:33,19:52:41:117,0,41
chrIV	1308387	.	C	T	170.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.82;MQ0=4;QD=3.33;SB=-2.204e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:24:203,24,0
chrIV	1308389	.	T	C	166.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.82;MQ0=4;QD=3.26;SB=-2.204e+01	GT:AD:DP:GQ:PL	1/1:4,47:51:24:199,24,0
chrIV	1308420	.	A	T	173.03	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.95;MQ0=5;QD=3.09;SB=-2.204e+01	GT:AD:DP:GQ:PL	1/1:2,53:56:24:206,24,0
chrIV	1308436	.	A	G	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.842;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=1;MLEAF=0.500;MQ=23.06;MQ0=4;MQRankSum=-2.402;QD=0.31;ReadPosRankSum=-1.589;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:21,25:46:44:44,0,98
chrIV	1308444	.	A	G	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.753;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=23.70;MQ0=4;MQRankSum=-2.993;QD=0.35;ReadPosRankSum=-1.018;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:21,20:41:44:44,0,95
chrIV	1308504	.	A	T	505	filter	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=22.37;MQ0=11;QD=6.73;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:7,68:75:60:538,60,0
chrIV	1308520	.	A	G	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;DP=87;Dels=0.00;FS=8.888;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=28.21;MQ0=10;MQRankSum=2.335;QD=0.55;ReadPosRankSum=1.573;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:59,28:87:78:78,0,498
chrIV	1308528	.	A	G	29.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.016;DP=95;Dels=0.00;FS=5.998;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=31.07;MQ0=10;MQRankSum=1.678;QD=0.31;ReadPosRankSum=2.772;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:67,28:95:59:59,0,629
chrIV	1308557	.	T	C	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.889;DP=109;Dels=0.00;FS=16.376;HaplotypeScore=12.1690;MLEAC=1;MLEAF=0.500;MQ=32.53;MQ0=11;MQRankSum=-2.607;QD=0.25;ReadPosRankSum=-1.541;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,43:109:57:57,0,936
chrIV	1308573	.	G	A	873.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.484;DP=89;Dels=0.00;FS=18.998;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=34.78;MQ0=6;MQRankSum=2.402;QD=9.81;ReadPosRankSum=5.172;SB=-2.542e+02	GT:AD:DP:GQ:PL	0/1:34,55:89:11:903,0,11
chrIV	1308583	.	T	C	784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.516;DP=76;Dels=0.00;FS=9.591;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=3;MQRankSum=2.642;QD=10.32;ReadPosRankSum=4.594;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:18,58:76:31:817,31,0
chrIV	1308589	.	T	C	731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.055;DP=60;Dels=0.00;FS=2.390;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=1;MQRankSum=1.048;QD=12.18;ReadPosRankSum=3.280;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:6,54:60:47:764,47,0
chrIV	1308631	.	T	C	183.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=4.69;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,39:39:24:216,24,0
chrIV	1308635	.	A	G	130.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=14.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.963;QD=4.82;ReadPosRankSum=1.605;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:1,26:27:18:163,18,0
chrIV	1308636	.	T	G	118.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.54;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,26:26:18:151,18,0
chrIV	1308637	.	A	G	114.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.39;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,26:26:18:147,18,0
chrIV	1308640	.	G	A	84.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.24;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:0,26:26:15:117,15,0
chrIV	1308641	.	T	C	111.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;MQRankSum=-1.733;QD=4.12;ReadPosRankSum=1.605;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:1,26:27:18:144,18,0
chrIV	1308642	.	T	C	109.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=4.04;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,27:27:18:142,18,0
chrIV	1308644	.	A	C	118.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.89;MQ0=0;QD=4.07;SB=-5.614e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:18:151,18,0
chrIV	1308678	.	T	C	831	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=11.38;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:96:864,96,0
chrIV	1308951	.	C	G	1300	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=17.33;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1333,147,0
chrIV	1309104	.	C	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.30;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1282,144,0
chrIV	1309251	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.37;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:971,108,0
chrIV	1309349	.	T	C	690	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.56;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:723,78,0
chrIV	1309390	.	T	C	942	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.44;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:975,105,0
chrIV	1309424	.	G	A	1040	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.93;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1073,111,0
chrIV	1309473	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.487;QD=18.09;ReadPosRankSum=1.678;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1209,132,0
chrIV	1309512	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1236,132,0
chrIV	1309620	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.33;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1185,123,0
chrIV	1309649	.	G	C	1085	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.73;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1118,123,0
chrIV	1309698	.	C	T	812	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.30;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:90:845,90,0
chrIV	1309772	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1319,141,0
chrIV	1309975	.	C	T	713	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=13.98;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:78:746,78,0
chrIV	1309983	.	T	C	856	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=15.02;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:889,99,0
chrIV	1310168	.	G	A	1315	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.63;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1348,141,0
chrIV	1310395	.	G	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.67;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1172,129,0
chrIV	1310837	.	G	A	1477	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.03;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1510,153,0
chrIV	1310896	.	G	A	862	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.10;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:895,99,0
chrIV	1311444	.	C	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.92;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1587,174,0
chrIV	1311671	.	T	C	2884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=2.981;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=2.010;QD=23.45;ReadPosRankSum=2.410;SB=-1.437e+03	GT:AD:DP:GQ:PL	1/1:2,121:123:99:2917,324,0
chrIV	1311768	.	T	C	1731	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.36;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1764,192,0
chrIV	1311784	.	C	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.00;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1853,192,0
chrIV	1311941	.	A	G	3557.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.554;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.866;QD=22.66;ReadPosRankSum=1.665;SB=-1.924e+03	GT:AD:DP:GQ:PL	1/1:1,155:157:99:3557,384,0
chrIV	1311986	.	G	A	2963	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=22.97;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2996,330,0
chrIV	1312036	.	C	T	2113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.300;DP=101;Dels=0.00;FS=22.353;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-1.889;QD=20.92;ReadPosRankSum=3.021;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:4,97:101:99:2146,222,0
chrIV	1312038	.	C	T	1987	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.28;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2020,210,0
chrIV	1312058	.	C	T	1763	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=19.37;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1796,189,0
chrIV	1312234	.	A	T	2336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.1246;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=1.008;QD=20.49;ReadPosRankSum=1.701;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:1,112:114:99:2369,264,0
chrIV	1312268	.	G	A	2592	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.34;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2625,276,0
chrIV	1312280	.	C	T	2900	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.37;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2933,298,0
chrIV	1312365	.	T	C	1680	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.46;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1713,186,0
chrIV	1312371	.	G	A	1782	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.80;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1815,189,0
chrIV	1312462	.	A	C	1695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.978;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=1.393;QD=22.01;ReadPosRankSum=2.386;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1728,189,0
chrIV	1312501	.	G	C	865	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=18.80;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:898,99,0
chrIV	1312526	.	A	G	888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=3.006;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.237;QD=18.89;ReadPosRankSum=2.345;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:99:921,99,0
chrIV	1312613	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.17;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1409,147,0
chrIV	1312700	.	C	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.59;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1351,147,0
chrIV	1312729	.	T	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.83;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1512,156,0
chrIV	1313044	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.099;QD=22.10;ReadPosRankSum=-1.039;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1580,168,0
chrIV	1313459	.	A	G	948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.356;QD=20.17;ReadPosRankSum=1.506;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:99:981,105,0
chrIV	1313549	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1385,150,0
chrIV	1313591	.	C	T	1460	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1493,156,0
chrIV	1314007	.	A	G	2009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.057;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.056;QD=21.60;ReadPosRankSum=1.620;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2042,219,0
chrIV	1314244	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.51;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1981,216,0
chrIV	1314298	.	G	A	2020	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.2156;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.40;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2053,216,0
chrIV	1314547	.	G	A	2473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=4.949;HaplotypeScore=7.7216;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=0.139;QD=24.73;ReadPosRankSum=0.831;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2506,258,0
chrIV	1314697	.	G	A	2937	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.89;SB=-1.411e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2970,309,0
chrIV	1314742	.	T	C	2259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.661;QD=20.54;ReadPosRankSum=1.701;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2292,255,0
chrIV	1314814	.	A	G	2292	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.42;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2325,249,0
chrIV	1314845	.	A	G	2483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-0.417;QD=20.52;ReadPosRankSum=2.368;SB=-1.491e+03	GT:AD:DP:GQ:PL	1/1:2,119:121:99:2516,273,0
chrIV	1314849	.	T	C	2491	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.11;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2524,270,0
chrIV	1314911	.	C	T	3354.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.4865;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.21;SB=-2.018e+03	GT:AD:DP:GQ:PL	1/1:0,149:151:99:3354,351,0
chrIV	1315208	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.5280;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.00;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1800,195,0
chrIV	1315285	.	T	G	1732	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=4.943;HaplotypeScore=7.9193;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.698;QD=16.82;ReadPosRankSum=1.698;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1765,192,0
chrIV	1315908	.	A	G	1198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=57;Dels=0.00;FS=2.949;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.155;QD=21.02;ReadPosRankSum=2.274;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:2,54:57:99:1231,135,0
chrIV	1315959	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.27;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1168,123,0
chrIV	1316046	.	G	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1331,144,0
chrIV	1316130	.	C	T	1321	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1354,144,0
chrIV	1316310	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.98;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1504,156,0
chrIV	1316641	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.87;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1494,162,0
chrIV	1316682	.	A	C	1739	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.82;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1772,189,0
chrIV	1316858	.	C	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1703,183,0
chrIV	1317219	.	A	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.24;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1611,180,0
chrIV	1317255	.	T	C	1909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=19.0092;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.247;QD=19.09;ReadPosRankSum=1.697;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1942,213,0
chrIV	1317337	.	C	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.39;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1904,201,0
chrIV	1317887	.	G	A	2923	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=5.6256;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.30;SB=-1.666e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:2956,312,0
chrIV	1317903	.	G	C	2991	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.68;SB=-1.648e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3024,327,0
chrIV	1318030	.	A	C	1985	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.06;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2018,219,0
chrIV	1318045	.	G	A	2200	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.95;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2233,243,0
chrIV	1318291	.	C	T	1128	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.19;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1161,126,0
chrIV	1318378	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.8131;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.17;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1851,195,0
chrIV	1318438	.	G	A	2054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.434;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=1.410;QD=23.88;ReadPosRankSum=0.967;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2087,216,0
chrIV	1318539	.	A	G	2010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.979;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.423;QD=22.33;ReadPosRankSum=1.694;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2043,219,0
chrIV	1318750	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.42;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1054,111,0
chrIV	1318845	.	T	C	1922	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3018;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.60;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1955,210,0
chrIV	1318922	.	G	T	1696	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=19.49;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1729,183,0
chrIV	1318941	.	T	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=17.30;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1607,174,0
chrIV	1318943	.	A	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=18.01;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1690,177,0
chrIV	1319011	.	T	C	2216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.666;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.383;QD=20.91;ReadPosRankSum=2.380;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2249,246,0
chrIV	1319047	.	A	G	1872	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.02;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1905,207,0
chrIV	1319069	.	C	T	1640	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.03;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1673,174,0
chrIV	1319224	.	T	C	1515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.409;QD=16.47;ReadPosRankSum=1.654;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,88:92:99:1548,168,0
chrIV	1319237	.	T	C	1553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.367;DP=98;Dels=0.00;FS=5.317;HaplotypeScore=4.5374;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-1.068;QD=15.85;ReadPosRankSum=3.367;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:4,94:98:99:1586,174,0
chrIV	1319259	.	C	T	2134	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.40;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2167,231,0
chrIV	1319285	.	C	T	2835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=0.356;QD=19.42;ReadPosRankSum=-1.708;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:1,145:146:99:2868,300,0
chrIV	1319513	.	G	A	1574	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.71;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1607,177,0
chrIV	1319945	.	T	A	2324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=102;Dels=0.00;FS=13.681;HaplotypeScore=6.9663;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.730;QD=22.78;ReadPosRankSum=2.931;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:3,99:102:99:2357,243,0
chrIV	1320001	.	G	C	2560	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.26;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2593,288,0
chrIV	1320420	.	A	C	1243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.0543;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.650;QD=19.42;ReadPosRankSum=1.570;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1276,135,0
chrIV	1320570	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.72;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1185,129,0
chrIV	1320639	.	A	C	844	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=16.55;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:96:877,96,0
chrIV	1320813	.	T	C	1249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.540;QD=22.30;ReadPosRankSum=1.668;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:1,53:56:99:1282,141,0
chrIV	1320873	.	T	A	1027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.374;QD=19.75;ReadPosRankSum=1.597;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1060,111,0
chrIV	1321125	.	T	C	1162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.4922;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.621;QD=18.74;ReadPosRankSum=1.621;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1195,109,0
chrIV	1323775	.	C	T	1863	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.21;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1896,201,0
chrIV	1324779	.	C	A	2693	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.02;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2726,303,0
chrIV	1329018	.	G	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.7792;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.31;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1406,147,0
chrIV	1329648	.	G	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.27;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1569,171,0
chrIV	1331502	.	G	A	2009	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.32;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2042,219,0
chrIV	1331912	.	C	T	2482	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.77;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2515,264,0
chrIV	1332858	.	C	T	3647.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=7.0367;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.37;SB=-1.658e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3647,390,0
chrIV	1332967	.	A	G	2949	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.129;QD=24.37;ReadPosRankSum=1.703;SB=-1.539e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2982,318,0
chrIV	1333099	.	T	A	2369	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.68;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2402,255,0
chrIV	1333367	.	C	T	1881	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.22;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1914,201,0
chrIV	1333408	.	C	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.94;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1810,189,0
chrIV	1333527	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.38;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1582,171,0
chrIV	1333544	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.55;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1499,165,0
chrIV	1333678	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=3.774;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.671;QD=20.58;ReadPosRankSum=1.621;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1309,141,0
chrIV	1333799	.	C	T	1056	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.60;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1089,114,0
chrIV	1333857	.	G	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.47;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1466,162,0
chrIV	1333916	.	A	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.09;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1383,147,0
chrIV	1334159	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.990;QD=20.40;ReadPosRankSum=0.247;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1461,153,0
chrIV	1334256	.	G	A	1710	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.75;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1743,180,0
chrIV	1335398	.	C	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.52;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1474,162,0
chrIV	1336491	.	A	G	559	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.47;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:63:592,63,0
chrIV	1337005	.	G	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.70;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1621,168,0
chrIV	1337038	.	A	G	2057	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.65;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2090,222,0
chrIV	1337121	.	T	C	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.645;QD=21.13;ReadPosRankSum=1.664;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1132,120,0
chrIV	1337135	.	G	A	968	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.04;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1001,105,0
chrIV	1337192	.	T	G	405	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.87;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,22:24:48:438,48,0
chrIV	1337236	.	T	C	811	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.53;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:844,90,0
chrIV	1337684	.	C	G	2165	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.19;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2198,243,0
chrIV	1337715	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.756;DP=109;Dels=0.00;FS=21.519;HaplotypeScore=11.1785;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.232;QD=17.31;ReadPosRankSum=3.697;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:5,102:109:99:1920,207,0
chrIV	1337789	.	T	C	3304.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.5411;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.600;QD=22.03;ReadPosRankSum=1.709;SB=-1.368e+03	GT:AD:DP:GQ:PL	1/1:1,149:150:99:3304,360,0
chrIV	1337856	.	G	A	2862	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.44;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2895,321,0
chrIV	1337857	.	G	A	2968	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.66;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:0,135:137:99:3001,306,0
chrIV	1337917	.	G	A	3703.01	PASS	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.69;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,174:179:99:3703,402,0
chrIV	1338262	.	G	T	2918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=141;Dels=0.00;FS=3.245;HaplotypeScore=10.8608;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=1.680;QD=20.70;ReadPosRankSum=1.420;SB=-1.761e+03	GT:AD:DP:GQ:PL	1/1:1,140:141:99:2951,288,0
chrIV	1338288	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=6.480;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;MQRankSum=-1.358;QD=16.07;ReadPosRankSum=2.282;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1447,156,0
chrIV	1338291	.	A	G	1231	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.41;MQ0=0;QD=14.15;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1264,138,0
chrIV	1338321	.	T	G	870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=7.6729;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=1.048;QD=10.48;ReadPosRankSum=1.689;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:903,99,0
chrIV	1338322	.	C	T	917	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=6.7426;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=11.18;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:950,102,0
chrIV	1338365	.	C	T	794	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=11.03;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:87:827,87,0
chrIV	1338366	.	T	C	825	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=3.802;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-1.732;QD=11.30;ReadPosRankSum=1.684;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:96:858,96,0
chrIV	1338475	.	T	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.45;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1993,207,0
chrIV	1338562	.	T	C	1819	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.112;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.128;QD=21.15;ReadPosRankSum=1.611;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1852,201,0
chrIV	1338585	.	A	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.91;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1666,180,0
chrIV	1338669	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=21.94;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1437,156,0
chrIV	1339080	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.72;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1587,168,0
chrIV	1339103	.	C	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.49;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1903,198,0
chrIV	1339347	.	C	T	3381.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.15;SB=-1.937e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3381,354,0
chrIV	1339488	.	C	T	2568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;DP=114;Dels=0.00;FS=3.207;HaplotypeScore=5.0053;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.518;QD=22.53;ReadPosRankSum=1.609;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2601,251,0
chrIV	1340287	.	T	C	2012	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.3085;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.95;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2045,228,0
chrIV	1340653	.	A	C	1343	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.32;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1376,150,0
chrIV	1340844	.	C	T	1538	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.36;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1571,162,0
chrIV	1340915	.	G	C	1800	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.22;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1833,201,0
chrIV	1341209	.	A	G	2534	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.83;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2567,279,0
chrIV	1341251	.	A	C	2011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=-1.400;QD=21.39;ReadPosRankSum=1.695;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2044,222,0
chrIV	1341263	.	C	T	1907	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.43;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1940,210,0
chrIV	1341287	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=19.31;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1423,159,0
chrIV	1341684	.	C	G	674	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=14.04;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:78:707,78,0
chrIV	1341693	.	C	T	624	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=13.57;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:72:657,72,0
chrIV	1341695	.	C	T	586	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;QD=13.02;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:66:619,66,0
chrIV	1341731	.	T	C	572	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=16.34;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:66:605,66,0
chrIV	1341749	.	T	G	648	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=15.43;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:681,75,0
chrIV	1341794	.	C	T	1187	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.78;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1220,129,0
chrIV	1341815	.	T	C	1013	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.09;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1046,117,0
chrIV	1341826	.	G	C	1154	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.56;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1187,132,0
chrIV	1341876	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.68;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1398,144,0
chrIV	1341991	.	A	G	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.373;DP=76;Dels=0.00;FS=8.121;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.110;QD=18.61;ReadPosRankSum=3.709;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:5,71:76:99:1447,159,0
chrIV	1342306	.	G	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.28;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1459,153,0
chrIV	1342433	.	G	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.21;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1221,126,0
chrIV	1342632	.	G	A	1807	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.51;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1840,189,0
chrIV	1342654	.	C	T	2000	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.98;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2033,213,0
chrIV	1344013	.	G	A	3476.01	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.28;SB=-1.569e+03	GT:AD:DP:GQ:PL	1/1:0,154:156:99:3476,375,0
chrIV	1344040	.	G	A	2924	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.8284;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.21;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2957,306,0
chrIV	1344085	.	G	A	2245	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.45;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2278,255,0
chrIV	1344235	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.54;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1440,159,0
chrIV	1344347	.	A	G	3353.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.1119;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.342;QD=23.28;ReadPosRankSum=1.683;SB=-1.423e+03	GT:AD:DP:GQ:PL	1/1:1,142:144:99:3353,360,0
chrIV	1344480	.	A	G	1490	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.91;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1523,162,0
chrIV	1344556	.	C	T	1257	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.31;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1290,135,0
chrIV	1344681	.	C	T	877	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=14.62;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:910,99,0
chrIV	1344727	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=16.58;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:945,102,0
chrIV	1345591	.	T	C	642	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.45;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:675,72,0
chrIV	1345632	.	T	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.81;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1199,126,0
chrIV	1345811	.	G	A	1324	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.35;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1357,141,0
chrIV	1345853	.	A	G	1240	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.02;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1273,141,0
chrIV	1346089	.	A	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5840;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.79;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1367,150,0
chrIV	1346336	.	G	C	1643	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.62;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1676,180,0
chrIV	1346429	.	T	A	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.188;QD=19.13;ReadPosRankSum=1.633;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1372,144,0
chrIV	1346435	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.22;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1347,144,0
chrIV	1346618	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=15.87;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1176,129,0
chrIV	1346636	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.039;QD=17.81;ReadPosRankSum=1.602;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1458,159,0
chrIV	1346702	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.30;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1434,159,0
chrIV	1346703	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.56;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1455,162,0
chrIV	1346810	.	T	C	1829	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.02;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1862,201,0
chrIV	1347423	.	A	T	1973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=93;Dels=0.00;FS=3.522;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.539;QD=21.22;ReadPosRankSum=1.578;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2006,213,0
chrIV	1347437	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.95;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1757,192,0
chrIV	1347464	.	C	T	1648	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.60;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1681,177,0
chrIV	1347713	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.89;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1368,150,0
chrIV	1347800	.	C	T	1803	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=23.42;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1836,192,0
chrIV	1347821	.	A	G	1818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=3.032;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=1.385;QD=22.44;ReadPosRankSum=2.389;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1851,201,0
chrIV	1347956	.	A	G	1117	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1150,129,0
chrIV	1348046	.	C	T	2024	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.99;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2057,213,0
chrIV	1349120	.	A	G	979	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.18;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1012,111,0
chrIV	1349336	.	A	G	816	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.98;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:849,93,0
chrIV	1349687	.	T	C	1243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.052;QD=22.20;ReadPosRankSum=1.670;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1276,141,0
chrIV	1349944	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.50;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1509,159,0
chrIV	1350135	.	T	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.06;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1243,138,0
chrIV	1350342	.	G	A	725	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=16.86;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:758,87,0
chrIV	1350343	.	A	G	722	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=16.79;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:755,87,0
chrIV	1350585	.	T	C	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=3.757;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.000;QD=21.26;ReadPosRankSum=1.641;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1670,180,0
chrIV	1350718	.	C	G	862	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.30;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:895,99,0
chrIV	1350781	.	G	A	930	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.98;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:963,102,0
chrIV	1350913	.	T	C	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=6.515;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.616;QD=21.79;ReadPosRankSum=2.390;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1820,201,0
chrIV	1351039	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1308,141,0
chrIV	1351468	.	T	C	898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.667;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=2.747;QD=17.27;ReadPosRankSum=2.629;SB=-5.499e+02	GT:AD:DP:GQ:PL	1/1:3,49:52:58:931,58,0
chrIV	1351604	.	T	C	645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.866;QD=16.12;ReadPosRankSum=1.646;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:72:678,72,0
chrIV	1351660	.	A	T	630	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.53;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:69:663,69,0
chrIV	1351681	.	C	T	716	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.89;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:749,78,0
chrIV	1351744	.	C	T	916	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.91;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:949,99,0
chrIV	1351777	.	G	A	894	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=15.68;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:927,99,0
chrIV	1351789	.	T	G	795	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=15.00;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:828,93,0
chrIV	1351983	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=22.34;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1820,192,0
chrIV	1351996	.	G	A	1835	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.34;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1868,198,0
chrIV	1352298	.	G	C	1720	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.00;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1753,189,0
chrIV	1352335	.	C	T	2811	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.82;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2844,300,0
chrIV	1352644	.	T	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=21.52;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1475,159,0
chrIV	1352741	.	T	C	44.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=10;QD=1.41;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:10,22:32:9:77,9,0
chrIV	1352748	.	C	G	65.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=35.2606;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=11;QD=1.93;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:11,23:34:12:98,12,0
chrIV	1352749	.	T	A	65.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=29.3137;MLEAC=2;MLEAF=1.00;MQ=23.08;MQ0=11;QD=1.93;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:11,23:34:12:98,12,0
chrIV	1352769	.	C	T	79.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=11;QD=3.79;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:11,10:21:12:112,12,0
chrIV	1352772	.	A	C	77.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=11;QD=3.69;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:11,10:21:12:110,12,0
chrIV	1352775	.	G	T	80.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=10;QD=4.03;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:10,10:20:12:113,12,0
chrIV	1352785	.	G	A	81.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=10;QD=4.08;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:10,10:20:12:114,12,0
chrIV	1352786	.	T	C	73.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=10;QD=3.68;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:10,10:20:12:106,12,0
chrIV	1352787	.	A	G	77.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=10;QD=3.88;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:10,10:20:12:110,12,0
chrIV	1352792	.	G	A	82.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=10;QD=4.13;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:10,10:20:12:115,12,0
chrIV	1352973	.	A	T	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=65.08;MQ0=0;QD=3.30;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:51,6,0
chrIV	1353101	.	T	G	1780	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=19.14;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1813,195,0
chrIV	1353103	.	A	G	1773	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=91;Dels=0.00;FS=6.166;HaplotypeScore=6.0560;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;MQRankSum=-0.967;QD=19.48;ReadPosRankSum=2.856;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:3,88:91:99:1806,192,0
chrIV	1353157	.	C	G	1234	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=16.03;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1267,138,0
chrIV	1353158	.	T	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=16.81;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1294,132,0
chrIV	1353214	.	A	G	1763	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=19.81;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1796,198,0
chrIV	1353235	.	C	A	2003	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=19.64;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2036,222,0
chrIV	1353245	.	A	C	1992	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=18.79;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2025,225,0
chrIV	1353261	.	C	T	2073	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=16.72;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2106,243,0
chrIV	1353372	.	T	C	1693	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.577;DP=85;Dels=0.00;FS=8.189;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;MQRankSum=-1.167;QD=19.92;ReadPosRankSum=3.689;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:5,80:85:99:1726,189,0
chrIV	1353386	.	T	C	1707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=-0.693;QD=21.34;ReadPosRankSum=1.689;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1740,189,0
chrIV	1353387	.	T	C	1715	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.44;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1748,189,0
chrIV	1353438	.	A	G	1479	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=3.575;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;MQRankSum=-0.042;QD=17.82;ReadPosRankSum=1.605;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1512,165,0
chrIV	1353470	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=20.87;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1118,120,0
chrIV	1353481	.	A	G	1115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;MQRankSum=0.257;QD=20.65;ReadPosRankSum=1.604;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1148,126,0
chrIV	1353607	.	A	T	2201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=0.513;QD=20.38;ReadPosRankSum=1.668;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2234,231,0
chrIV	1353632	.	A	T	1979	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=19.59;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2012,222,0
chrIV	1353650	.	G	T	2076	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=20.35;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2109,231,0
chrIV	1353675	.	A	G	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=90;Dels=0.00;FS=3.024;HaplotypeScore=4.0887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.151;QD=19.16;ReadPosRankSum=2.340;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1757,192,0
chrIV	1353805	.	C	A	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.433;QD=20.71;ReadPosRankSum=-0.722;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1027,108,0
chrIV	1353826	.	T	C	685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.3183;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=0.274;QD=16.71;ReadPosRankSum=1.641;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:1,37:41:78:718,78,0
chrIV	1353834	.	C	A	662	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=15.05;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:72:695,72,0
chrIV	1353893	.	C	T	424	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=12.11;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:48:457,48,0
chrIV	1353895	.	G	C	422	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=11.11;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:51:455,51,0
chrIV	1354051	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.93;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1493,156,0
chrIV	1354128	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.71;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1227,129,0
chrIV	1354217	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.09;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1557,168,0
chrIV	1354788	.	A	G	2439	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=5.850;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.594;QD=24.15;ReadPosRankSum=1.697;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,99:101:99:2472,276,0
chrIV	1354833	.	T	G	1868	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=96;Dels=0.00;FS=10.359;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.828;QD=19.46;ReadPosRankSum=2.753;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:3,91:96:99:1901,204,0
chrIV	1355368	.	T	C	1914	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.06;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1947,210,0
chrIV	1355505	.	G	T	919	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.67;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:952,99,0
chrIV	1355576	.	C	A	2853	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.89;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:2886,309,0
chrIV	1355944	.	G	A	3221.92	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.9699;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.69;SB=-1.517e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3255,351,0
chrIV	1357207	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0716;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.335;QD=19.61;ReadPosRankSum=1.675;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1229,132,0
chrIV	1357404	.	C	G	452	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.08;SB=-6.553e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:54:485,54,0
chrIV	1359608	.	T	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.26;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1754,189,0
chrIV	1361031	.	A	G	2074	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.12;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2107,228,0
chrIV	1362063	.	T	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1332,138,0
chrIV	1362495	.	G	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.63;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1147,126,0
chrIV	1364176	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.65;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1357,156,0
chrIV	1364465	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.31;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1461,153,0
chrIV	1364702	.	G	A	2482	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.6555;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.51;SB=-1.400e+03	GT:AD:DP:GQ:PL	1/1:0,118:121:99:2515,261,0
chrIV	1364750	.	A	G	3183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=128;Dels=0.00;FS=11.355;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.374;QD=24.87;ReadPosRankSum=2.411;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:2,126:128:99:3216,342,0
chrIV	1365330	.	G	A	2404	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.34;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2437,255,0
chrIV	1366227	.	C	T	1502	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.30;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1535,162,0
chrIV	1366369	.	A	G	867	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.27;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:900,99,0
chrIV	1366750	.	G	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.36;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1116,117,0
chrIV	1367576	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9107;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.07;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1466,159,0
chrIV	1368022	.	C	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.16;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1303,138,0
chrIV	1368624	.	T	C	1691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=3.239;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.799;QD=21.14;ReadPosRankSum=1.688;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1724,192,0
chrIV	1368825	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.82;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1856,195,0
chrIV	1371004	.	T	C	1659	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.23;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1692,186,0
chrIV	1371121	.	C	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.52;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1880,198,0
chrIV	1371136	.	C	T	1755	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.08;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1788,189,0
chrIV	1371862	.	A	G	2052	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.8412;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.732;QD=20.73;ReadPosRankSum=1.662;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2085,222,0
chrIV	1371972	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.4717;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.950;QD=22.46;ReadPosRankSum=1.621;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1448,156,0
chrIV	1372366	.	C	T	2074	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2107,219,0
chrIV	1372422	.	G	A	2864	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=15.5811;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.55;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2897,303,0
chrIV	1372812	.	C	T	2282	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.54;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2315,243,0
chrIV	1373275	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.92;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2137,222,0
chrIV	1373320	.	C	T	2322	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.54;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2355,255,0
chrIV	1373769	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.87;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1258,132,0
chrIV	1374217	.	G	T	3166	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.54;SB=-1.762e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3199,336,0
chrIV	1374352	.	T	C	1602	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.22;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1635,180,0
chrIV	1374505	.	T	G	2157	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.15;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2190,237,0
chrIV	1374590	.	A	G	682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.418;QD=11.76;ReadPosRankSum=1.673;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:78:715,78,0
chrIV	1374919	.	C	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.27;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1489,156,0
chrIV	1375261	.	C	T	1770	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.12;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1803,195,0
chrIV	1379791	.	A	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.73;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1754,189,0
chrIV	1379888	.	C	T	2200	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.18;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2233,234,0
chrIV	1380625	.	A	G	2457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.637;QD=22.54;ReadPosRankSum=1.700;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2490,267,0
chrIV	1381826	.	C	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.27;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1999,207,0
chrIV	1386851	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.254;QD=20.60;ReadPosRankSum=1.673;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1228,135,0
chrIV	1386920	.	G	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.72;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1640,171,0
chrIV	1387160	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=21.21;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1836,198,0
chrIV	1389010	.	T	A	2113	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.72;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2146,225,0
chrIV	1390591	.	C	T	1010	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.96;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1043,111,0
chrIV	1390794	.	T	A	808	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:90:841,90,0
chrIV	1391355	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.546;QD=21.69;ReadPosRankSum=1.590;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,72:75:99:1660,177,0
chrIV	1391478	.	G	A	1072	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.36;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1105,117,0
chrIV	1391636	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.74;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1257,135,0
chrIV	1392190	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.79;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1166,126,0
chrIV	1394087	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.39;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1494,156,0
chrIV	1396254	.	T	C	1889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.00;FS=2.921;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.965;QD=22.22;ReadPosRankSum=2.391;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:2,81:85:99:1922,207,0
chrIV	1398006	.	G	A	2104	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.62;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2137,222,0
chrIV	1398909	.	C	T	2755	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.19;SB=-1.521e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:2788,294,0
chrIV	1400042	.	G	A	2850	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.36;SB=-1.448e+03	GT:AD:DP:GQ:PL	1/1:0,113:117:99:2883,303,0
chrIV	1400934	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.07;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1625,168,0
chrIV	1400971	.	C	T	1557	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.96;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1590,171,0
chrIV	1401563	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1297,141,0
chrIV	1401685	.	A	G	1618	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6122;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.81;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1651,180,0
chrIV	1401828	.	C	A	1436	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.23;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1469,165,0
chrIV	1402305	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2502;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.85;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1564,168,0
chrIV	1402695	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.89;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1224,132,0
chrIV	1402714	.	G	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.43;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1289,138,0
chrIV	1402760	.	A	G	911	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=18.59;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:944,102,0
chrIV	1402876	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.043;QD=20.27;ReadPosRankSum=1.646;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1675,183,0
chrIV	1402910	.	T	C	1885	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1154;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.92;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1918,213,0
chrIV	1403082	.	C	T	1523	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.73;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1556,165,0
chrIV	1403147	.	T	G	2088	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5595;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.46;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2121,234,0
chrIV	1403314	.	G	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.07;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1740,180,0
chrIV	1403565	.	G	C	1812	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.0801;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1845,201,0
chrIV	1403689	.	A	G	1364	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.65;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1397,156,0
chrIV	1405114	.	A	C	2396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=117;Dels=0.00;FS=3.941;HaplotypeScore=9.5326;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.182;QD=20.48;ReadPosRankSum=1.671;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:1,113:117:99:2429,264,0
chrIV	1405144	.	C	T	3812.01	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.28;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,157:157:99:3812,397,0
chrIV	1405366	.	A	G	2118	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=10.9174;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.859;QD=18.42;ReadPosRankSum=1.672;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2151,240,0
chrIV	1405720	.	T	C	1989	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.68;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2022,216,0
chrIV	1405837	.	G	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.06;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1108,120,0
chrIV	1405995	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.65;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1286,141,0
chrIV	1406114	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=15.06;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:982,108,0
chrIV	1406119	.	A	C	946	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=14.12;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:979,105,0
chrIV	1406300	.	C	T	2405	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=23.58;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2438,255,0
chrIV	1406338	.	G	A	1708	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.41;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1741,189,0
chrIV	1406339	.	A	T	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=7.260;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.552;QD=20.95;ReadPosRankSum=2.308;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1856,198,0
chrIV	1406350	.	T	C	1842	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.433;QD=20.93;ReadPosRankSum=1.653;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1875,207,0
chrIV	1406418	.	A	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.96;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1360,150,0
chrIV	1406566	.	A	G	2112	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.71;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2145,237,0
chrIV	1406661	.	G	A	2249	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.67;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2282,243,0
chrIV	1406875	.	G	A	2335	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.24;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2368,243,0
chrIV	1406893	.	C	A	2172	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.86;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2205,231,0
chrIV	1406925	.	C	T	2214	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.14;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2247,240,0
chrIV	1406984	.	G	A	2671	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.7954;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.89;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2704,279,0
chrIV	1407015	.	T	G	2658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.3171;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.100;QD=20.77;ReadPosRankSum=1.677;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:1,125:128:99:2691,294,0
chrIV	1407144	.	A	G	2593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=117;Dels=0.00;FS=6.849;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.665;QD=22.16;ReadPosRankSum=2.365;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:2,114:117:99:2626,288,0
chrIV	1407227	.	C	T	2292	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.22;SB=-1.415e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2325,240,0
chrIV	1407260	.	G	T	2162	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.41;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2195,240,0
chrIV	1407479	.	C	T	2453	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=23.59;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2486,264,0
chrIV	1407493	.	C	T	2153	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.90;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2186,240,0
chrIV	1407535	.	A	G	1341	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=16.56;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1374,150,0
chrIV	1407539	.	C	G	1200	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.58;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1233,135,0
chrIV	1407587	.	T	C	1600	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.00;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1633,180,0
chrIV	1407845	.	C	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.39;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1690,177,0
chrIV	1407899	.	C	T	1687	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.2617;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.76;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1720,183,0
chrIV	1408247	.	C	T	2474	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=16.5927;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.33;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,109:116:99:2507,267,0
chrIV	1408334	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.05;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1176,123,0
chrIV	1408358	.	C	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.96;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1153,120,0
chrIV	1408568	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.92;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1832,201,0
chrIV	1408733	.	G	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.44;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1671,171,0
chrIV	1408760	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.20;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1325,144,0
chrIV	1408799	.	A	G	1041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=0.276;QD=15.09;ReadPosRankSum=1.531;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1074,117,0
chrIV	1408802	.	T	C	1140	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=16.52;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1173,129,0
chrIV	1409468	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1334,144,0
chrIV	1409615	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=4.337;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.547;QD=19.96;ReadPosRankSum=1.687;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1570,171,0
chrIV	1409738	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.96;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1614,177,0
chrIV	1409794	.	A	G	2210	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.633;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.354;QD=23.51;ReadPosRankSum=1.695;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:2243,237,0
chrIV	1409847	.	C	T	2150	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.40;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2183,228,0
chrIV	1410118	.	C	T	2302	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.37;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2335,243,0
chrIV	1410747	.	C	T	2103	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6554;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.14;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2136,231,0
chrIV	1411151	.	C	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.76;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1642,171,0
chrIV	1411239	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.84;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1362,144,0
chrIV	1411263	.	A	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0467;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.18;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1251,138,0
chrIV	1411265	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3639;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.22;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1254,132,0
chrIV	1411324	.	G	A	703	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=11.72;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:78:736,78,0
chrIV	1412726	.	G	T	2153	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1783;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.53;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2186,228,0
chrIV	1412849	.	G	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.26;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1052,108,0
chrIV	1412922	.	C	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.26;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1096,114,0
chrIV	1413740	.	C	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.76;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2005,213,0
chrIV	1413914	.	T	C	2169	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.48;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2202,237,0
chrIV	1414499	.	A	C	1949	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.496;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.632;QD=22.93;ReadPosRankSum=1.610;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1982,219,0
chrIV	1414537	.	T	C	1730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.7095;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.996;QD=21.10;ReadPosRankSum=1.646;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:1,79:82:99:1763,195,0
chrIV	1414676	.	A	G	1380	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.000;QD=21.23;ReadPosRankSum=1.678;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1413,153,0
chrIV	1414748	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.15;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1445,153,0
chrIV	1414833	.	T	C	2181	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.96;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2214,234,0
chrIV	1414935	.	T	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.88;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1200,129,0
chrIV	1415081	.	T	C	1713	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;DP=80;Dels=0.00;FS=9.885;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.380;QD=21.41;ReadPosRankSum=2.912;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:3,77:80:99:1746,189,0
chrIV	1415193	.	A	T	2546	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.48;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2579,273,0
chrIV	1416353	.	A	G	2320	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.97;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2353,252,0
chrIV	1416431	.	G	A	2222	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.67;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2255,237,0
chrIV	1416545	.	A	C	1432	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.46;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1465,159,0
chrIV	1416560	.	G	A	1374	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.47;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1407,144,0
chrIV	1416976	.	G	A	2973	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.9348;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.02;SB=-1.501e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:3006,324,0
chrIV	1417489	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.54;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1304,135,0
chrIV	1417646	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1962,207,0
chrIV	1418589	.	T	A	1723	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=27.35;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1756,180,0
chrIV	1418662	.	T	C	686	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:78:719,78,0
chrIV	1418910	.	A	T	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-1.176;QD=17.93;ReadPosRankSum=1.689;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1485,156,0
chrIV	1418912	.	C	T	1485	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.56;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1518,156,0
chrIV	1418937	.	T	C	1443	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.18;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1476,159,0
chrIV	1419231	.	C	T	1119	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.35;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1152,123,0
chrIV	1419258	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.22;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:917,102,0
chrIV	1419261	.	A	G	919	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.42;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:952,102,0
chrIV	1419366	.	G	A	1794	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.88;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1827,192,0
chrIV	1419516	.	T	C	1704	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.42;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1737,192,0
chrIV	1419597	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.41;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1557,165,0
chrIV	1419825	.	A	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.34;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1555,171,0
chrIV	1419978	.	A	G	1618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=7.983;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.004;QD=17.40;ReadPosRankSum=2.396;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:2,90:93:99:1651,183,0
chrIV	1419993	.	T	C	1697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=-0.711;QD=17.86;ReadPosRankSum=1.696;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1730,189,0
chrIV	1420155	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.1047;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.422;QD=19.50;ReadPosRankSum=1.681;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1359,150,0
chrIV	1420608	.	A	G	2022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=4.3272;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.442;QD=21.51;ReadPosRankSum=1.695;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2055,228,0
chrIV	1420941	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.66;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1395,150,0
chrIV	1421140	.	C	T	2904	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=26.16;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2937,312,0
chrIV	1421201	.	T	C	1723	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.09;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1756,195,0
chrIV	1421222	.	C	A	955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=-0.466;QD=17.69;ReadPosRankSum=1.466;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:88:988,88,0
chrIV	1421240	.	C	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=20.10;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1058,114,0
chrIV	1421288	.	T	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=17.64;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1162,126,0
chrIV	1421307	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.63;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1498,165,0
chrIV	1421325	.	G	T	1596	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.20;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1629,174,0
chrIV	1421376	.	T	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5629;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=16.60;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:82:99:1394,153,0
chrIV	1421386	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.94;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1371,144,0
chrIV	1421456	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=15.45;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1161,123,0
chrIV	1421572	.	G	A	1040	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.51;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1073,111,0
chrIV	1421596	.	A	G	800	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=14.81;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:93:833,93,0
chrIV	1421618	.	T	C	684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=57;Dels=0.00;FS=5.332;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;MQRankSum=0.130;QD=12.00;ReadPosRankSum=2.316;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:3,52:57:81:717,81,0
chrIV	1421621	.	T	C	695	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.04;FS=0.000;HaplotypeScore=7.2370;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=12.41;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:81:728,81,0
chrIV	1421633	.	A	G	760	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=12.88;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:90:793,90,0
chrIV	1421744	.	T	C	691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=3.757;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.638;QD=18.18;ReadPosRankSum=1.641;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:78:724,78,0
chrIV	1421768	.	T	C	776	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.48;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:87:809,87,0
chrIV	1421908	.	A	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=23.11;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1327,144,0
chrIV	1421954	.	A	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.21;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1128,126,0
chrIV	1421975	.	T	C	950	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=16.67;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:983,111,0
chrIV	1422008	.	C	T	1250	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=19.23;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1283,135,0
chrIV	1422082	.	G	A	1160	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=23.20;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1193,126,0
chrIV	1422093	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.98;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1067,114,0
chrIV	1422480	.	G	C	743	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.05;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:84:776,84,0
chrIV	1422501	.	C	T	644	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=20.77;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:69:677,69,0
chrIV	1422529	.	C	A	295	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=13.41;SB=-7.401e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:36:328,36,0
chrIV	1422894	.	G	A	1893	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.96;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1926,201,0
chrIV	1423134	.	T	C	2007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.472;QD=22.81;ReadPosRankSum=1.693;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2040,228,0
chrIV	1423497	.	C	T	3285.01	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.80;SB=-1.721e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3285,345,0
chrIV	1423605	.	C	T	2326	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.73;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2359,246,0
chrIV	1423651	.	A	G	1764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.390;QD=22.05;ReadPosRankSum=1.689;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1797,192,0
chrIV	1423668	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.62;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1387,153,0
chrIV	1424193	.	T	C	1754	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.20;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1787,192,0
chrIV	1424247	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.38;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1443,150,0
chrIV	1424343	.	A	C	1754	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6318;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.71;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1787,192,0
chrIV	1424583	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.70;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1218,135,0
chrIV	1424601	.	C	T	1048	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.29;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1081,114,0
chrIV	1424800	.	C	T	2952	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.05;FS=0.000;HaplotypeScore=176.1628;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=20.79;SB=-1.636e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2985,318,0
chrIV	1424813	.	G	A	1953	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.08;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1986,216,0
chrIV	1424818	.	A	G	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.638;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=1.133;QD=16.98;ReadPosRankSum=1.666;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1799,198,0
chrIV	1424907	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.14;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:971,105,0
chrIV	1424978	.	T	C	2160	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.04;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2193,240,0
chrIV	1425132	.	A	G	1901	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.10;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1934,210,0
chrIV	1425177	.	G	A	1835	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=23.83;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1868,192,0
chrIV	1425311	.	T	C	1428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=-0.907;QD=22.67;ReadPosRankSum=1.677;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1461,159,0
chrIV	1425361	.	T	C	1628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.315;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.662;QD=23.94;ReadPosRankSum=1.681;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1661,177,0
chrIV	1425462	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.39;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1371,144,0
chrIV	1425467	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=3.072;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.017;QD=18.47;ReadPosRankSum=2.381;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1363,147,0
chrIV	1425476	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;MQRankSum=0.439;QD=17.28;ReadPosRankSum=1.686;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:1,74:78:99:1381,147,0
chrIV	1425592	.	A	G	1293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;MQRankSum=-0.879;QD=18.74;ReadPosRankSum=1.682;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1326,141,0
chrIV	1425597	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=17.28;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1260,138,0
chrIV	1425629	.	C	T	840	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=14.24;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:873,99,0
chrIV	1425636	.	A	G	679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;MQRankSum=-1.543;QD=12.35;ReadPosRankSum=1.669;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:78:712,78,0
chrIV	1425647	.	C	T	547	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.46;MQ0=0;QD=11.16;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:63:580,63,0
chrIV	1425652	.	C	T	560	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=12.17;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:63:593,63,0
chrIV	1425695	.	T	C	645	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=15.73;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:75:678,75,0
chrIV	1425816	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.69;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1440,150,0
chrIV	1426040	.	C	T	623	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=15.97;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:656,69,0
chrIV	1426058	.	C	T	521	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=13.71;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:60:554,60,0
chrIV	1426065	.	A	G	454	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=12.61;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:54:487,54,0
chrIV	1426079	.	T	C	378	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=9.69;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:45:411,45,0
chrIV	1426086	.	T	C	381	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.7130;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=9.29;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:45:414,45,0
chrIV	1426697	.	T	C	1484	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=22.15;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1517,165,0
chrIV	1426719	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.76;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1377,150,0
chrIV	1426734	.	G	A	1195	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.84;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1228,138,0
chrIV	1426830	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.01;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1882,195,0
chrIV	1427031	.	T	A	2042	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.27;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2075,216,0
chrIV	1427536	.	A	G	2042	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.74;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2075,231,0
chrIV	1428139	.	A	C	808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.347;QD=19.71;ReadPosRankSum=1.646;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:90:841,90,0
chrIV	1428286	.	A	C	2185	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.86;SB=-1.469e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2218,237,0
chrIV	1428300	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=16.63;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:1979,213,0
chrIV	1428344	.	G	T	1867	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.29;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1900,198,0
chrIV	1428426	.	G	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.50;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1772,183,0
chrIV	1428494	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1940;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.12;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1559,162,0
chrIV	1429008	.	T	G	1653	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=17.97;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1686,189,0
chrIV	1429017	.	T	C	1825	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.07;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,98:101:99:1858,204,0
chrIV	1429094	.	C	G	1480	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.41;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1513,162,0
chrIV	1429122	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=13.86;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1225,132,0
chrIV	1429123	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=0.265;QD=13.69;ReadPosRankSum=1.691;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1210,132,0
chrIV	1429245	.	A	G	989	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=16.21;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1022,114,0
chrIV	1429251	.	G	A	934	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=15.31;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:967,102,0
chrIV	1429599	.	G	A	1594	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.25;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1627,171,0
chrIV	1429749	.	C	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4294;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=17.31;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1089,123,0
chrIV	1429800	.	A	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=17.79;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1421,156,0
chrIV	1429971	.	C	G	1448	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.99;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1481,162,0
chrIV	1430016	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.18;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1864,195,0
chrIV	1430075	.	A	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.97;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1810,195,0
chrIV	1430241	.	C	T	718	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8631;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=12.60;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:78:751,78,0
chrIV	1430249	.	G	T	662	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=13.24;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:72:695,72,0
chrIV	1430342	.	T	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.8700;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.33;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1436,153,0
chrIV	1430445	.	T	G	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.679;DP=89;Dels=0.00;FS=4.428;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;MQRankSum=0.098;QD=15.42;ReadPosRankSum=3.519;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:5,84:89:99:1405,156,0
chrIV	1430469	.	A	G	1788	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=-1.452;QD=18.06;ReadPosRankSum=1.697;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1821,201,0
chrIV	1430493	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=16.24;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1511,165,0
chrIV	1430496	.	G	T	1462	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=16.24;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1495,159,0
chrIV	1430819	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.27;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1495,156,0
chrIV	1430837	.	A	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=18.34;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1555,168,0
chrIV	1431080	.	G	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.31;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1193,132,0
chrIV	1432132	.	T	C	293	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.93;SB=-8.400e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:36:326,36,0
chrIV	1432285	.	G	C	1482	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.30;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1515,168,0
chrIV	1432429	.	A	G	1203	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.39;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1236,135,0
chrIV	1432478	.	T	C	551	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=14.13;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:66:584,66,0
chrIV	1432487	.	A	T	529	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=13.22;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:60:562,60,0
chrIV	1432529	.	C	A	1364	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.00;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1397,144,0
chrIV	1432790	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.62;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1249,138,0
chrIV	1433104	.	G	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.68;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1522,168,0
chrIV	1433144	.	A	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.99;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1775,192,0
chrIV	1433318	.	A	G	1378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.289;QD=22.97;ReadPosRankSum=1.675;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1411,153,0
chrIV	1433591	.	T	C	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=4.006;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.856;QD=18.79;ReadPosRankSum=1.690;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1611,177,0
chrIV	1433693	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.29;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1372,147,0
chrIV	1433710	.	A	T	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=1.121;QD=19.87;ReadPosRankSum=1.681;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1384,144,0
chrIV	1433930	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.93;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1540,168,0
chrIV	1434291	.	T	G	2002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=96;Dels=0.00;FS=2.611;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.256;QD=20.85;ReadPosRankSum=2.923;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:3,90:96:99:2035,222,0
chrIV	1434729	.	C	T	2100	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.2744;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.39;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2133,219,0
chrIV	1434754	.	C	G	2207	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.64;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2240,243,0
chrIV	1434785	.	A	T	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=0.774;QD=23.36;ReadPosRankSum=1.695;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2229,231,0
chrIV	1434789	.	A	G	1954	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.24;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1987,213,0
chrIV	1435061	.	G	A	1721	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.95;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1754,189,0
chrIV	1435565	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.702;QD=18.97;ReadPosRankSum=1.685;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1437,159,0
chrIV	1435664	.	A	G	1587	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.00;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1620,174,0
chrIV	1435712	.	A	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.83;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1470,156,0
chrIV	1436114	.	G	A	2002	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.83;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2035,213,0
chrIV	1436292	.	G	A	1754	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.93;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1787,195,0
chrIV	1436590	.	A	G	2011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.178;DP=101;Dels=0.00;FS=8.861;HaplotypeScore=14.8915;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.444;QD=19.91;ReadPosRankSum=3.369;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:4,97:101:99:2044,222,0
chrIV	1436636	.	C	T	2234	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.08;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2267,240,0
chrIV	1436661	.	T	C	2080	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4199;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=21.01;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2113,228,0
chrIV	1436682	.	T	A	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-1.596;QD=19.05;ReadPosRankSum=1.630;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1976,210,0
chrIV	1437015	.	G	A	2188	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.03;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2221,231,0
chrIV	1437136	.	A	G	1405	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.29;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1438,153,0
chrIV	1437175	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.30;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1505,162,0
chrIV	1437254	.	G	T	1384	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1417,147,0
chrIV	1437691	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1185,129,0
chrIV	1437913	.	T	G	1514	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.66;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1547,171,0
chrIV	1438128	.	T	C	1526	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.78;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1559,168,0
chrIV	1438196	.	T	C	1412	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.77;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1445,159,0
chrIV	1438439	.	T	C	1786	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.19;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1819,195,0
chrIV	1438524	.	G	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.29;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1571,168,0
chrIV	1438558	.	C	T	1341	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.35;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1374,144,0
chrIV	1438565	.	G	C	1269	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.15;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1302,144,0
chrIV	1438949	.	G	A	1889	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.04;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1922,207,0
chrIV	1439256	.	C	T	2835	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.50;SB=-1.614e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2868,297,0
chrIV	1439525	.	T	C	2202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=98;Dels=0.00;FS=3.784;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.601;QD=22.47;ReadPosRankSum=1.697;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2235,243,0
chrIV	1439714	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.70;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1479,156,0
chrIV	1440320	.	T	C	2013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.448;QD=22.12;ReadPosRankSum=1.693;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,88:91:99:2046,225,0
chrIV	1440455	.	A	G	1611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.297;QD=22.69;ReadPosRankSum=1.633;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1644,180,0
chrIV	1440565	.	G	C	1653	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=24.31;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1686,189,0
chrIV	1440662	.	A	G	1723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.048;QD=21.27;ReadPosRankSum=1.689;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1756,189,0
chrIV	1440707	.	A	G	1961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=-0.787;QD=22.28;ReadPosRankSum=1.693;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1994,216,0
chrIV	1440746	.	G	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.47;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,76:80:99:1591,168,0
chrIV	1440752	.	G	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.21;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1624,168,0
chrIV	1440788	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.29;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1616,171,0
chrIV	1440866	.	G	A	2459	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.84;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2492,264,0
chrIV	1440930	.	C	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.69;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1999,213,0
chrIV	1440937	.	C	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5384;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.95;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1701,177,0
chrIV	1440975	.	G	A	1158	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=13.79;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1191,132,0
chrIV	1440976	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;MQRankSum=0.620;QD=15.27;ReadPosRankSum=1.262;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1270,135,0
chrIV	1441000	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=15.85;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1444,150,0
chrIV	1441038	.	T	G	1763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.183;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.3148;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=1.080;QD=17.46;ReadPosRankSum=1.526;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:1796,198,0
chrIV	1441188	.	G	C	2891	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.74;SB=-1.509e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2924,318,0
chrIV	1441482	.	G	A	1615	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=19.94;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1648,171,0
chrIV	1441483	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.22;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1571,174,0
chrIV	1441634	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.9197;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.38;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1684,177,0
chrIV	1441919	.	C	T	1951	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.98;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1984,213,0
chrIV	1441967	.	G	A	1916	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.95;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1949,204,0
chrIV	1442387	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.81;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1218,129,0
chrIV	1442606	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.314;QD=20.48;ReadPosRankSum=1.613;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1221,132,0
chrIV	1442725	.	T	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.86;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1243,135,0
chrIV	1442748	.	C	T	1076	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.30;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1109,114,0
chrIV	1442806	.	G	A	1146	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=17.36;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1179,123,0
chrIV	1443134	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.04;FS=0.000;HaplotypeScore=5.8874;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.83;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1580,171,0
chrIV	1443154	.	C	T	1470	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.09;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1503,159,0
chrIV	1443258	.	G	T	1127	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=16.33;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1160,126,0
chrIV	1443399	.	G	T	1005	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.71;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1038,108,0
chrIV	1443484	.	G	A	718	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=17.51;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:78:751,78,0
chrIV	1443515	.	A	T	620	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=12.40;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:69:653,69,0
chrIV	1443531	.	T	C	580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=5.202;HaplotypeScore=13.2326;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.275;QD=10.94;ReadPosRankSum=1.667;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:66:613,66,0
chrIV	1443617	.	A	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=23.17;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1400,153,0
chrIV	1443643	.	A	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=57.5492;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=17.44;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1114,138,0
chrIV	1443661	.	C	T	1703	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=20.52;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1736,180,0
chrIV	1443734	.	T	C	1853	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.88;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1886,204,0
chrIV	1443800	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.56;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1310,141,0
chrIV	1443859	.	A	G	1517	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.28;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1550,168,0
chrIV	1443911	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.29;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1617,174,0
chrIV	1444544	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.61;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2111,222,0
chrIV	1444610	.	C	T	2399	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=22.63;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2432,264,0
chrIV	1444664	.	G	A	1436	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4699;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.94;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1469,165,0
chrIV	1444679	.	C	T	1226	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.5571;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.16;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1259,135,0
chrIV	1444709	.	T	C	1005	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.38;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1038,114,0
chrIV	1444769	.	A	G	1250	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.49;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1283,138,0
chrIV	1444847	.	A	G	1067	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=16.67;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1100,126,0
chrIV	1444895	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.32;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1617,171,0
chrIV	1445114	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.23;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1625,177,0
chrIV	1445249	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.20;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1166,126,0
chrIV	1445333	.	C	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2268;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.29;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1306,138,0
chrIV	1445429	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.25;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2139,225,0
chrIV	1445459	.	T	A	1692	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1322;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.23;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1725,177,0
chrIV	1445471	.	A	C	1648	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.52;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1681,186,0
chrIV	1445573	.	A	G	723	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.25;MQ0=0;QD=13.15;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:84:756,84,0
chrIV	1445588	.	G	C	450	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=9.57;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:51:483,51,0
chrIV	1445593	.	A	G	404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.04;MQ0=0;MQRankSum=-1.578;QD=8.98;ReadPosRankSum=1.578;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:48:437,48,0
chrIV	1445650	.	G	C	772	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=15.44;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:87:805,87,0
chrIV	1445653	.	A	G	980	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.60;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1013,108,0
chrIV	1445712	.	C	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.63;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1368,147,0
chrIV	1445777	.	A	C	2207	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.82;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2240,246,0
chrIV	1445941	.	T	C	868	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.87;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:901,99,0
chrIV	1445972	.	G	T	922	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.82;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:955,102,0
chrIV	1446020	.	T	C	997	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.81;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1030,114,0
chrIV	1446136	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.31;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1388,147,0
chrIV	1446146	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.47;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1448,150,0
chrIV	1446179	.	C	T	1540	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.91;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1573,162,0
chrIV	1446236	.	G	A	1319	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=15.70;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1352,141,0
chrIV	1446425	.	G	A	1173	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.33;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1206,132,0
chrIV	1446428	.	C	T	1177	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=21.40;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1210,129,0
chrIV	1446434	.	G	A	1102	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=20.41;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1135,117,0
chrIV	1446482	.	G	A	731	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.74;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:764,81,0
chrIV	1446654	.	T	C	768	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=16.34;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:801,87,0
chrIV	1446792	.	C	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.89;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1521,159,0
chrIV	1446878	.	A	G	1316	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.69;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1349,147,0
chrIV	1446950	.	T	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.45;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1161,129,0
chrIV	1447014	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=23.02;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1529,162,0
chrIV	1447053	.	G	A	1248	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.81;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1281,141,0
chrIV	1447054	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.58;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1247,138,0
chrIV	1447111	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.51;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1292,144,0
chrIV	1447149	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.32;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1617,171,0
chrIV	1447231	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.33;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1251,129,0
chrIV	1447282	.	C	T	980	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=16.33;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1013,105,0
chrIV	1447296	.	A	G	982	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=16.93;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1015,111,0
chrIV	1447297	.	T	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=17.68;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1041,108,0
chrIV	1447313	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=16.42;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1133,117,0
chrIV	1447378	.	G	A	1149	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.15;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1182,123,0
chrIV	1447428	.	G	C	1066	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.32;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1099,117,0
chrIV	1447474	.	C	G	1076	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=20.69;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1109,123,0
chrIV	1447558	.	C	A	981	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.87;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1014,111,0
chrIV	1447682	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.78;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1176,135,0
chrIV	1447808	.	C	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.16;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1387,153,0
chrIV	1447837	.	G	A	1643	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.91;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1676,174,0
chrIV	1447962	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.81;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1360,147,0
chrIV	1447991	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.82;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1227,132,0
chrIV	1448237	.	G	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.65;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1901,198,0
chrIV	1448315	.	G	A	1656	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=23.32;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1689,177,0
chrIV	1448483	.	T	A	2223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.423;QD=21.79;ReadPosRankSum=1.698;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2256,237,0
chrIV	1448600	.	A	G	2128	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.160;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.161;QD=24.46;ReadPosRankSum=1.652;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:2161,234,0
chrIV	1448696	.	A	T	1631	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.75;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1664,177,0
chrIV	1448726	.	C	G	1691	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.88;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1724,186,0
chrIV	1448735	.	G	A	1639	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.84;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1672,180,0
chrIV	1448745	.	A	G	1667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.501;QD=18.12;ReadPosRankSum=1.617;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:1,89:92:99:1700,186,0
chrIV	1448987	.	T	A	2028	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=11.4594;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.53;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2061,219,0
chrIV	1449089	.	T	C	1549	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.415;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.577;QD=16.84;ReadPosRankSum=1.694;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:1,89:92:99:1582,171,0
chrIV	1449123	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=17.21;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1685,180,0
chrIV	1449406	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=24.19;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1920,195,0
chrIV	1449611	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.69;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1161,126,0
chrIV	1450091	.	G	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1312,135,0
chrIV	1450513	.	T	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.34;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1518,156,0
chrIV	1450588	.	C	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=4.8976;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.41;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1414,156,0
chrIV	1450638	.	G	A	2023	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.8443;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=21.75;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2056,219,0
chrIV	1450681	.	T	A	1566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.344;DP=80;Dels=0.00;FS=8.951;HaplotypeScore=72.1735;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=-0.695;QD=19.57;ReadPosRankSum=3.344;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:4,76:80:99:1599,165,0
chrIV	1450720	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.32;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1366,144,0
chrIV	1450764	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.08;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1277,138,0
chrIV	1450894	.	C	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=20.59;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1948,210,0
chrIV	1450897	.	A	G	1846	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.47;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1879,210,0
chrIV	1450914	.	T	C	1735	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5065;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=21.16;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1768,195,0
chrIV	1450998	.	G	A	710	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=11.64;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:78:743,78,0
chrIV	1451009	.	A	T	605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;MQRankSum=-1.103;QD=9.17;ReadPosRankSum=2.338;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:69:638,69,0
chrIV	1451028	.	G	A	768	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.7917;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=10.38;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:87:801,87,0
chrIV	1451042	.	C	G	808	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=10.63;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:93:841,93,0
chrIV	1451054	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=13.28;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1069,111,0
chrIV	1451129	.	A	T	199.03	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=52.6624;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=2.88;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:24:232,24,0
chrIV	1451166	.	A	G	1105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=76;Dels=0.00;FS=2.437;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.221;QD=14.54;ReadPosRankSum=3.245;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:4,72:76:99:1138,123,0
chrIV	1451277	.	C	T	1212	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.65;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1245,132,0
chrIV	1451427	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=23.49;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1278,132,0
chrIV	1451517	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.98;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1304,138,0
chrIV	1451576	.	C	G	896	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.57;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:929,99,0
chrIV	1451577	.	C	T	924	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.48;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:957,99,0
chrIV	1451724	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.55;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1493,159,0
chrIV	1451955	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.39;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1366,147,0
chrIV	1452195	.	A	G	838	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.49;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:871,96,0
chrIV	1452222	.	A	G	767	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.73;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:800,90,0
chrIV	1452255	.	C	T	1064	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.417;QD=24.18;ReadPosRankSum=1.024;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1097,117,0
chrIV	1452420	.	G	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.33;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1151,123,0
chrIV	1452434	.	A	T	1057	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=20.73;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1090,114,0
chrIV	1452539	.	T	G	1259	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.71;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1292,141,0
chrIV	1452589	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.66;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1128,126,0
chrIV	1452642	.	G	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.68;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1958,213,0
chrIV	1452762	.	G	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.02;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1993,210,0
chrIV	1452807	.	C	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.47;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1532,156,0
chrIV	1452825	.	A	G	1001	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=11.78;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1034,114,0
chrIV	1452837	.	T	C	957	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=11.67;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:990,111,0
chrIV	1453212	.	T	G	1420	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2639;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.54;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1453,156,0
chrIV	1453300	.	G	A	2411	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.18;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2444,261,0
chrIV	1454207	.	C	T	2327	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.7396;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.35;SB=-1.482e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2360,246,0
chrIV	1454951	.	A	G	2926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.571;DP=129;Dels=0.00;FS=11.007;HaplotypeScore=8.4840;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.742;QD=22.68;ReadPosRankSum=2.899;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:3,126:129:99:2959,321,0
chrIV	1455133	.	A	G	1081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.388;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=22.52;ReadPosRankSum=1.660;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1114,120,0
chrIV	1455507	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.431;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.007;QD=22.68;ReadPosRankSum=1.652;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,85:88:99:2029,216,0
chrIV	1455570	.	T	C	1604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.485;QD=21.11;ReadPosRankSum=1.686;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1637,177,0
chrIV	1455696	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.06;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1437,156,0
chrIV	1455747	.	A	G	1874	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.30;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1907,207,0
chrIV	1456302	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=5.863;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.128;QD=24.24;ReadPosRankSum=1.668;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1342,147,0
chrIV	1457142	.	T	C	1455	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.10;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1488,165,0
chrIV	1457335	.	T	C	1896	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.31;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1929,210,0
chrIV	1457379	.	G	A	2563	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2596,273,0
chrIV	1457633	.	C	A	1854	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.08;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1887,195,0
chrIV	1457664	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.25;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1902,198,0
chrIV	1457763	.	C	T	1957	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.97;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1990,213,0
chrIV	1457829	.	G	A	1703	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=23.65;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1736,183,0
chrIV	1457981	.	C	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.2773;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.03;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1947,204,0
chrIV	1458101	.	C	T	2176	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.67;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2209,243,0
chrIV	1458188	.	G	A	388	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=6.93;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:45:421,45,0
chrIV	1458243	.	T	C	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=4.586;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.577;QD=18.97;ReadPosRankSum=1.632;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1342,147,0
chrIV	1458332	.	C	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=17.73;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1717,192,0
chrIV	1458347	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.10;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2063,216,0
chrIV	1458387	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.9940;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.51;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1539,168,0
chrIV	1458423	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=88;Dels=0.00;FS=4.130;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=0.591;QD=16.28;ReadPosRankSum=1.575;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1466,162,0
chrIV	1458432	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5500;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=15.70;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1320,144,0
chrIV	1458576	.	G	A	1325	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;QD=21.37;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1358,147,0
chrIV	1458625	.	C	T	895	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.27;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:928,96,0
chrIV	1458636	.	G	T	839	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=15.25;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:93:872,93,0
chrIV	1458898	.	C	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=20.40;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1563,162,0
chrIV	1458903	.	C	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=20.51;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1612,171,0
chrIV	1458915	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=18.92;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1376,147,0
chrIV	1458931	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=18.31;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1388,150,0
chrIV	1458951	.	C	T	1033	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=14.97;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1066,114,0
chrIV	1459011	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0559;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.03;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1553,162,0
chrIV	1459382	.	G	A	3413.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.87;SB=-1.402e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:3413,372,0
chrIV	1459584	.	G	A	1611	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.14;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1644,174,0
chrIV	1459601	.	C	G	1287	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.71;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1320,141,0
chrIV	1459669	.	C	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.25;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1420,156,0
chrIV	1459800	.	C	T	2849	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.9918;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.42;SB=-1.693e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2882,309,0
chrIV	1459840	.	G	A	2170	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.87;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2203,228,0
chrIV	1460367	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.82;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1501,159,0
chrIV	1460373	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=19.31;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1385,156,0
chrIV	1460401	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=4.363;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;MQRankSum=-0.171;QD=19.07;ReadPosRankSum=1.683;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1387,153,0
chrIV	1460431	.	T	A	1227	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=20.11;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1260,135,0
chrIV	1460433	.	G	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=20.20;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1265,138,0
chrIV	1460475	.	G	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.41;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1176,132,0
chrIV	1460534	.	A	G	977	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.79;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1010,111,0
chrIV	1460585	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.50;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1254,138,0
chrIV	1460694	.	A	G	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=7.539;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.580;QD=19.75;ReadPosRankSum=2.263;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:99:1356,144,0
chrIV	1460721	.	A	G	1285	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.78;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1318,141,0
chrIV	1460763	.	A	T	1157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=62;Dels=0.00;FS=4.091;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=-1.204;QD=18.66;ReadPosRankSum=1.674;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1190,129,0
chrIV	1460774	.	C	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=17.00;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1053,111,0
chrIV	1460798	.	T	C	768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;MQRankSum=-1.246;QD=13.02;ReadPosRankSum=1.672;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:1,56:59:87:801,87,0
chrIV	1460813	.	A	G	737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=5.119;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;MQRankSum=-0.453;QD=11.34;ReadPosRankSum=1.679;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:81:770,81,0
chrIV	1460832	.	T	C	649	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=10.47;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:75:682,75,0
chrIV	1460859	.	G	A	863	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=13.70;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:93:896,93,0
chrIV	1460877	.	G	A	827	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=13.34;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:93:860,93,0
chrIV	1460907	.	A	G	687	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=13.47;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:81:720,81,0
chrIV	1460919	.	C	T	626	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=12.04;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:72:659,72,0
chrIV	1460932	.	C	T	781	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=13.47;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:87:814,87,0
chrIV	1460968	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=80;Dels=0.00;FS=5.980;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.101;QD=18.30;ReadPosRankSum=2.862;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:3,77:80:99:1497,162,0
chrIV	1461071	.	C	T	2388	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.5711;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.91;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2421,255,0
chrIV	1461391	.	C	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=18.74;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1551,159,0
chrIV	1461432	.	G	A	2096	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.77;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2129,225,0
chrIV	1461557	.	T	C	1059	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=21.61;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1092,117,0
chrIV	1461567	.	G	C	975	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=20.74;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1008,111,0
chrIV	1461591	.	C	T	467	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=14.15;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:51:500,51,0
chrIV	1461847	.	T	G	356.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.365;DP=58;Dels=0.00;FS=149.720;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;MQRankSum=1.782;QD=6.14;ReadPosRankSum=6.108;SB=-3.022e+00	GT:AD:DP:GQ:PL	1/1:28,30:58:3:386,3,0
chrIV	1461955	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.031;QD=25.47;ReadPosRankSum=1.606;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1434,156,0
chrIV	1462035	.	A	C	691	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.74;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:81:724,81,0
chrIV	1462057	.	A	G	318	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=10.97;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:39:351,39,0
chrIV	1462081	.	T	C	340	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=9.71;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:39:373,39,0
chrIV	1462089	.	C	A	419	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=10.47;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:48:452,48,0
chrIV	1462110	.	A	G	600	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=12.50;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:69:633,69,0
chrIV	1462394	.	C	T	1771	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=21.60;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1804,186,0
chrIV	1462526	.	A	G	1593	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.10;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1626,180,0
chrIV	1462630	.	A	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.62;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1287,132,0
chrIV	1462655	.	C	T	1160	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.35;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1193,126,0
chrIV	1462703	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.335;QD=19.37;ReadPosRankSum=1.676;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1234,135,0
chrIV	1462739	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.02;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1464,153,0
chrIV	1462835	.	A	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.56;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1161,126,0
chrIV	1462865	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.90;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1430,150,0
chrIV	1463461	.	C	T	992	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.55;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1025,108,0
chrIV	1463528	.	A	G	1070	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.54;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1103,123,0
chrIV	1463543	.	C	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.56;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1258,135,0
chrIV	1463657	.	A	G	2118	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=3.557;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.583;QD=22.77;ReadPosRankSum=1.695;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2151,237,0
chrIV	1463798	.	G	A	838	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.62;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:871,93,0
chrIV	1463897	.	T	G	1684	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=18.51;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1717,183,0
chrIV	1463912	.	T	C	1687	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.62;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1720,186,0
chrIV	1464119	.	G	A	943	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.79;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:976,102,0
chrIV	1464206	.	G	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.05;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1214,129,0
chrIV	1464362	.	C	T	2274	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.20;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2307,249,0
chrIV	1464424	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.57;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1471,156,0
chrIV	1464464	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.87;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1227,129,0
chrIV	1464656	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.93;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1539,168,0
chrIV	1464658	.	C	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.28;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1450,150,0
chrIV	1464680	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=13.14;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1005,108,0
chrIV	1465190	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.80;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1340,147,0
chrIV	1465247	.	C	T	842	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=12.38;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:96:875,96,0
chrIV	1465349	.	G	A	2189	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=24.60;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2222,228,0
chrIV	1465397	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.25;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1835,192,0
chrIV	1465643	.	C	T	1260	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2451;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.09;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1293,135,0
chrIV	1465769	.	G	A	933	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=16.66;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:966,105,0
chrIV	1465791	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.3298;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=14.08;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1033,111,0
chrIV	1465800	.	A	G	1041	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=13.52;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1074,120,0
chrIV	1465952	.	G	A	2642	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8144;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.92;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2675,276,0
chrIV	1466217	.	T	C	2251	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=105;Dels=0.00;FS=10.614;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.740;QD=21.44;ReadPosRankSum=2.189;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:2,102:105:99:2284,252,0
chrIV	1466338	.	G	A	1513	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.91;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1546,168,0
chrIV	1466344	.	A	T	1340	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.87;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1373,150,0
chrIV	1466364	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.07;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1311,135,0
chrIV	1466633	.	T	C	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.000;QD=20.99;ReadPosRankSum=1.688;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1670,183,0
chrIV	1466643	.	C	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5696;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=20.33;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1720,183,0
chrIV	1466759	.	G	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.75;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1909,207,0
chrIV	1466914	.	A	G	2228	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.51;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2261,243,0
chrIV	1466994	.	G	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.95;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1800,189,0
chrIV	1467056	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.22;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1773,192,0
chrIV	1467059	.	C	T	1757	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.17;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1790,189,0
chrIV	1467118	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=85;Dels=0.00;FS=2.836;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.371;QD=17.08;ReadPosRankSum=2.272;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:2,81:85:99:1485,162,0
chrIV	1467158	.	A	G	1296	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=2.952;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.019;QD=19.94;ReadPosRankSum=2.336;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1329,147,0
chrIV	1467260	.	C	T	1626	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.32;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1659,177,0
chrIV	1467392	.	T	A	1309	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.19;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1342,144,0
chrIV	1467544	.	C	T	888	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=13.87;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:921,99,0
chrIV	1467545	.	T	A	870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.222;DP=66;Dels=0.00;FS=3.069;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=1.045;QD=13.18;ReadPosRankSum=2.374;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:903,99,0
chrIV	1467713	.	A	G	1785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.000;QD=21.77;ReadPosRankSum=1.690;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1818,195,0
chrIV	1467761	.	G	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0161;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.91;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1501,156,0
chrIV	1467803	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.662;QD=19.99;ReadPosRankSum=1.681;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1392,150,0
chrIV	1467833	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3108;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.83;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1389,153,0
chrIV	1467965	.	C	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6298;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=19.92;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1686,177,0
chrIV	1468015	.	T	C	1343	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=16.58;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1376,150,0
chrIV	1468017	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=83;Dels=0.00;FS=6.978;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=0.977;QD=15.90;ReadPosRankSum=2.360;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:2,80:83:99:1353,144,0
chrIV	1468145	.	A	G	1293	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.20;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1326,144,0
chrIV	1468191	.	C	T	1305	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.40;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1338,138,0
chrIV	1468321	.	G	C	959	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=17.44;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:992,111,0
chrIV	1468372	.	G	C	716	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=14.92;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:749,84,0
chrIV	1468381	.	G	C	850	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=13.93;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:96:883,96,0
chrIV	1468406	.	C	T	908	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=14.19;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:941,99,0
chrIV	1468562	.	G	A	959	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.31;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:992,105,0
chrIV	1468720	.	C	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.78;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1449,153,0
chrIV	1468785	.	G	A	2209	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.25;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2242,231,0
chrIV	1468817	.	C	A	1428	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=17.41;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1461,162,0
chrIV	1468839	.	C	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.70;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1412,159,0
chrIV	1468900	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=22.83;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1357,141,0
chrIV	1468935	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.87;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1126,126,0
chrIV	1469141	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=7.744;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.335;QD=18.16;ReadPosRankSum=2.203;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1304,147,0
chrIV	1469161	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.49;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1378,153,0
chrIV	1469271	.	A	G	836	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=15.20;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:96:869,96,0
chrIV	1469289	.	T	A	709	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=13.63;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:742,81,0
chrIV	1469311	.	T	A	867	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=15.21;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:96:900,96,0
chrIV	1469501	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.72;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1354,138,0
chrIV	1469510	.	C	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.68;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1182,126,0
chrIV	1469751	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3436;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.13;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1533,159,0
chrIV	1469888	.	C	T	2056	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.63;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2089,222,0
chrIV	1469963	.	T	C	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.307;QD=23.40;ReadPosRankSum=1.672;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1390,153,0
chrIV	1470079	.	T	G	1588	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.37;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1621,177,0
chrIV	1470381	.	A	G	2377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=115;Dels=0.00;FS=2.591;HaplotypeScore=9.1518;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-1.664;QD=20.67;ReadPosRankSum=2.939;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:3,111:115:99:2410,258,0
chrIV	1470400	.	G	A	2258	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.92;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2291,240,0
chrIV	1470784	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=17.17;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1441,156,0
chrIV	1470869	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.10;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,47:49:99:1067,114,0
chrIV	1471220	.	G	A	533	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=17.77;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:60:566,60,0
chrIV	1471232	.	C	T	461	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=18.44;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:51:494,51,0
chrIV	1471256	.	C	T	245	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=12.25;SB=-2.902e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:30:278,30,0
chrIV	1471461	.	T	C	899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=14.150;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.266;QD=17.29;ReadPosRankSum=1.666;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:1,51:52:99:932,102,0
chrIV	1471524	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.70;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1420,159,0
chrIV	1471529	.	A	G	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.326;QD=20.46;ReadPosRankSum=-0.477;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1465,140,0
chrIV	1471657	.	A	G	576	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.15;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,25:26:66:609,66,0
chrIV	1471830	.	G	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.87;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2180,225,0
chrIV	1471854	.	G	C	2217	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.34;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2250,243,0
chrIV	1471977	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.8699;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.818;QD=20.78;ReadPosRankSum=1.684;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,71:74:99:1571,171,0
chrIV	1471999	.	G	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.91;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1506,165,0
chrIV	1472174	.	A	T	2003	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.7185;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.77;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2036,213,0
chrIV	1472290	.	A	G	2411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=111;Dels=0.00;FS=3.512;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.882;QD=21.72;ReadPosRankSum=1.669;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:1,109:111:99:2444,267,0
chrIV	1472336	.	C	A	2629	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.28;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2662,276,0
chrIV	1472819	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.87;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1717,180,0
chrIV	1472829	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.80;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1614,174,0
chrIV	1473027	.	A	G	1800	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.00;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1833,198,0
chrIV	1473079	.	C	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.99;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1726,186,0
chrIV	1473233	.	C	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.48;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1260,129,0
chrIV	1473269	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=3.021;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.499;QD=21.47;ReadPosRankSum=2.320;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1257,138,0
chrIV	1473316	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.78;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1405,153,0
chrIV	1473634	.	G	C	821	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=16.76;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,45:49:90:854,90,0
chrIV	1473635	.	G	C	815	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=16.63;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:848,90,0
chrIV	1473838	.	G	A	2700	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.89;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2733,279,0
chrIV	1473860	.	C	A	2280	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.92;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2313,240,0
chrIV	1473918	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.69;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1448,156,0
chrIV	1473919	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.61;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1424,150,0
chrIV	1474139	.	A	C	1812	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.68;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1845,195,0
chrIV	1474141	.	A	C	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=-0.925;QD=17.79;ReadPosRankSum=1.497;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1865,207,0
chrIV	1474394	.	T	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=22.65;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1800,192,0
chrIV	1474416	.	T	C	1606	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.62;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1639,180,0
chrIV	1474473	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.23;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1186,123,0
chrIV	1474481	.	C	T	1029	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=19.42;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1062,114,0
chrIV	1474567	.	C	T	736	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.87;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:81:769,81,0
chrIV	1474570	.	T	C	886	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.69;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:919,102,0
chrIV	1474679	.	C	T	648	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=18.51;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:69:681,69,0
chrIV	1474686	.	A	G	758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.473;QD=18.95;ReadPosRankSum=1.559;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:1,39:40:87:791,87,0
chrIV	1474885	.	A	G	2509	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.12;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2542,276,0
chrIV	1475249	.	G	A	1259	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.64;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1292,135,0
chrIV	1475397	.	G	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0404;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.50;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1866,192,0
chrIV	1475652	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.310;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.213;QD=21.75;ReadPosRankSum=1.675;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1338,141,0
chrIV	1476051	.	C	T	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.6104;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.694;QD=23.12;ReadPosRankSum=-0.057;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,91:95:99:2229,231,0
chrIV	1476401	.	G	C	1631	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.19;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1664,180,0
chrIV	1476502	.	T	C	2318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=5.037;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.262;QD=19.64;ReadPosRankSum=1.703;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2351,255,0
chrIV	1476572	.	A	G	1964	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.53;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1997,216,0
chrIV	1477116	.	A	G	1426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.009;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.688;QD=19.53;ReadPosRankSum=1.685;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1459,162,0
chrIV	1477174	.	T	A	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=4.420;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-1.565;QD=18.15;ReadPosRankSum=1.690;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1558,165,0
chrIV	1477202	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=16.72;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1504,156,0
chrIV	1477205	.	A	G	1394	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3090;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=15.84;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1427,156,0
chrIV	1477268	.	G	A	1987	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.84;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2020,210,0
chrIV	1477383	.	G	A	1347	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7386;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1380,144,0
chrIV	1477505	.	T	C	1843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.689;DP=95;Dels=0.00;FS=5.356;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=2.280;QD=19.40;ReadPosRankSum=2.796;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:3,91:95:99:1876,207,0
chrIV	1477709	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.72;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1601,168,0
chrIV	1477763	.	G	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.43;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1463,153,0
chrIV	1479403	.	G	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.91;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1522,162,0
chrIV	1479537	.	C	T	2192	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.08;SB=-1.377e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2225,231,0
chrIV	1480211	.	C	T	3145	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.30;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3178,336,0
chrIV	1480271	.	C	A	2190	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.47;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2223,231,0
chrIV	1483478	.	C	T	2702	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.56;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2735,294,0
chrIV	1483867	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=12.1830;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1552,159,0
chrIV	1483979	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.05;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1156,123,0
chrIV	1484273	.	G	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.17;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1186,123,0
chrIV	1484422	.	A	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.02;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1184,129,0
chrIV	1484599	.	G	A	2525	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.8921;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.60;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2558,267,0
chrIV	1484729	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.22;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1801,195,0
chrIV	1484733	.	A	G	1771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.674;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=0.157;QD=19.90;ReadPosRankSum=1.614;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1804,195,0
chrIV	1484812	.	G	A	2466	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7466;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.26;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2499,258,0
chrIV	1484977	.	A	G	2292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.010;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.976;QD=20.84;ReadPosRankSum=1.669;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2325,255,0
chrIV	1485012	.	G	T	2367	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.12;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2400,249,0
chrIV	1485210	.	C	T	2359	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.0265;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.45;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,107:110:99:2392,243,0
chrIV	1485375	.	A	T	610	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.1590;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.48;SB=-1.490e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:66:643,66,0
chrIV	1485403	.	G	A	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=34.8455;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=0.60;SB=-2.668e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:6:56,6,0
chrIV	1485510	.	G	A	750	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.27;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:783,81,0
chrIV	1485530	.	T	A	599	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.97;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:66:632,66,0
chrIV	1485542	.	C	T	335	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=11.96;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:39:368,39,0
chrIV	1485724	.	T	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.98;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1205,135,0
chrIV	1485812	.	A	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=23.70;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1218,132,0
chrIV	1486110	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.79;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1322,144,0
chrIV	1486166	.	C	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.01;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1798,189,0
chrIV	1486178	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.052;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.991;QD=20.43;ReadPosRankSum=2.393;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1790,192,0
chrIV	1486808	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.47;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1643,180,0
chrIV	1487095	.	T	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.91;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2180,225,0
chrIV	1487442	.	C	G	1680	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.27;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1713,189,0
chrIV	1487491	.	A	G	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.424;DP=121;Dels=0.00;FS=10.224;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=1.016;QD=16.69;ReadPosRankSum=4.269;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:7,114:121:99:2053,225,0
chrIV	1487794	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.48;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1606,168,0
chrIV	1487956	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.16;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1768,186,0
chrIV	1487967	.	A	G	1604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.381;QD=23.25;ReadPosRankSum=1.682;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1637,174,0
chrIV	1488034	.	G	A	844	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.35;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:877,93,0
chrIV	1488682	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.46;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1784,192,0
chrIV	1488904	.	C	T	2010	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.61;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2043,213,0
chrIV	1489122	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.74;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1464,159,0
chrIV	1489245	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.91;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1358,141,0
chrIV	1489717	.	G	C	972	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.44;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1005,111,0
chrIV	1491605	.	T	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.23;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1498,156,0
chrIV	1491810	.	A	G	2917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=137;Dels=0.00;FS=9.822;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=0.228;QD=21.29;ReadPosRankSum=2.934;SB=-1.647e+03	GT:AD:DP:GQ:PL	1/1:3,134:137:99:2950,321,0
chrIV	1491852	.	A	G	3028	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.43;SB=-1.447e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3061,336,0
chrIV	1491879	.	C	T	2519	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.48;SB=-1.477e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2552,270,0
chrIV	1491889	.	G	A	2384	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.20;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2417,255,0
chrIV	1491912	.	G	T	1893	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.27;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1926,201,0
chrIV	1492309	.	T	G	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.210;QD=22.32;ReadPosRankSum=1.637;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1662,183,0
chrIV	1492821	.	C	T	2006	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.7203;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.60;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2039,213,0
chrIV	1493200	.	A	T	1235	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6584;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=16.47;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1268,135,0
chrIV	1493468	.	G	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.04;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1611,168,0
chrIV	1493475	.	C	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=22.24;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1612,168,0
chrIV	1493527	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=19.68;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1548,165,0
chrIV	1493532	.	G	T	1509	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=18.18;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1542,165,0
chrIV	1493548	.	A	C	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;MQRankSum=-0.454;QD=16.50;ReadPosRankSum=1.691;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,83:86:99:1452,165,0
chrIV	1493561	.	C	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=18.32;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1718,192,0
chrIV	1493732	.	T	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.10;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1673,183,0
chrIV	1493838	.	G	A	3281.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.94;SB=-1.800e+03	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3281,363,0
chrIV	1493869	.	G	A	3409.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.02;FS=0.000;HaplotypeScore=5.4503;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=24.18;SB=-1.452e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3409,357,0
chrIV	1493889	.	T	C	2864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.926;QD=21.86;ReadPosRankSum=1.652;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:1,128:131:99:2897,318,0
chrIV	1493916	.	T	C	2521	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.8396;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.01;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2554,282,0
chrIV	1494972	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.673;QD=22.28;ReadPosRankSum=1.075;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1325,144,0
chrIV	1494981	.	A	G	1174	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.956;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.7302;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=1.673;QD=19.90;ReadPosRankSum=0.597;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1207,135,0
chrIV	1495111	.	C	T	1596	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.57;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1629,168,0
chrIV	1495218	.	G	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.13;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1462,153,0
chrIV	1495374	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=9.210;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.112;QD=18.55;ReadPosRankSum=2.194;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1480,162,0
chrIV	1495550	.	G	A	1881	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2394;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.80;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1914,213,0
chrIV	1495580	.	C	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1643;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.96;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1939,201,0
chrIV	1496312	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1479,159,0
chrIV	1497025	.	T	C	1531	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.20;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1564,174,0
chrIV	1497031	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.01;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1654,177,0
chrIV	1497062	.	T	G	1646	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.83;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1679,183,0
chrIV	1497133	.	A	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=23.63;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1947,204,0
chrIV	1497214	.	G	A	1852	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.3010;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.35;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1885,195,0
chrIV	1497405	.	T	A	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.274;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=1.274;QD=21.88;ReadPosRankSum=1.681;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1521,156,0
chrIV	1497535	.	A	G	986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.672;QD=17.30;ReadPosRankSum=1.611;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1019,111,0
chrIV	1497552	.	C	T	968	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=16.98;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1001,105,0
chrIV	1497589	.	G	A	831	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.89;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:864,90,0
chrIV	1497594	.	T	C	777	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=18.07;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:810,87,0
chrIV	1497628	.	A	G	714	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.31;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:78:747,78,0
chrIV	1498087	.	C	G	806	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:93:839,93,0
chrIV	1498969	.	G	C	2535	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.04;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,112:115:99:2568,282,0
chrIV	1499290	.	C	T	2568	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.73;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2601,267,0
chrIV	1499328	.	G	A	2690	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.4975;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.23;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2723,282,0
chrIV	1499947	.	T	A	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=3.302;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.832;QD=17.30;ReadPosRankSum=1.687;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1400,153,0
chrIV	1500051	.	C	T	942	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.93;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:975,102,0
chrIV	1500134	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1403,150,0
chrIV	1501238	.	T	A	1490	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.03;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1523,165,0
chrIV	1501314	.	C	T	1732	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.79;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1765,189,0
chrIV	1501555	.	A	G	911	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.2941;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.52;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:944,105,0
chrIV	1501681	.	T	C	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.3810;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.493;QD=19.83;ReadPosRankSum=1.692;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1758,192,0
chrIV	1501840	.	G	A	1653	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.04;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1686,177,0
chrIV	1502176	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.62;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1332,138,0
chrIV	1502377	.	G	A	987	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.56;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1020,111,0
chrIV	1502666	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1471,162,0
chrIV	1502869	.	G	A	1878	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.04;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1911,207,0
chrIV	1503614	.	G	A	1437	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.16;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1470,153,0
chrIV	1503884	.	A	C	19.81	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.406;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.988;QD=3.30;ReadPosRankSum=1.537;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:3,3:6:6:51,6,0
chrIV	1503885	.	A	G	26.77	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.406;QD=4.46;ReadPosRankSum=1.537;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:3,3:6:6:58,6,0
chrIV	1503889	.	C	T	20.80	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.727;QD=5.20;ReadPosRankSum=0.727;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:1,3:4:6:52,6,0
chrIV	1503929	.	A	G	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.605;DP=33;Dels=0.00;FS=22.280;HaplotypeScore=5.9383;MLEAC=1;MLEAF=0.500;MQ=30.55;MQ0=0;MQRankSum=-1.391;QD=0.67;ReadPosRankSum=-2.762;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:23,10:33:52:52,0,163
chrIV	1503937	.	C	G	63.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;DP=48;Dels=0.00;FS=18.361;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=31.93;MQ0=0;MQRankSum=-0.443;QD=1.31;ReadPosRankSum=-2.214;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:29,19:48:93:93,0,199
chrIV	1503947	.	G	A	242.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;DP=102;Dels=0.00;FS=6.610;HaplotypeScore=5.1685;MLEAC=1;MLEAF=0.500;MQ=29.44;MQ0=0;MQRankSum=1.769;QD=2.37;ReadPosRankSum=1.939;SB=-2.290e+02	GT:AD:DP:GQ:PL	0/1:65,36:102:99:272,0,258
chrIV	1503955	.	C	G	213.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DP=110;Dels=0.00;FS=1.554;HaplotypeScore=5.8803;MLEAC=1;MLEAF=0.500;MQ=30.98;MQ0=0;MQRankSum=-2.499;QD=1.94;ReadPosRankSum=0.906;SB=-3.890e+02	GT:AD:DP:GQ:PL	0/1:44,66:110:99:243,0,312
chrIV	1503965	.	G	A	362.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;DP=124;Dels=0.00;FS=1.458;HaplotypeScore=6.9515;MLEAC=1;MLEAF=0.500;MQ=31.20;MQ0=0;MQRankSum=2.914;QD=2.92;ReadPosRankSum=-1.724;SB=-4.560e+02	GT:AD:DP:GQ:PL	0/1:72,52:124:99:392,0,279
chrIV	1503973	.	C	G	231.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;DP=134;Dels=0.00;FS=1.399;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=31.77;MQ0=0;MQRankSum=-2.822;QD=1.72;ReadPosRankSum=3.526;SB=-5.020e+02	GT:AD:DP:GQ:PL	0/1:69,65:134:99:261,0,442
chrIV	1503983	.	G	A	514.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.924;DP=139;Dels=0.00;FS=3.114;HaplotypeScore=58.0819;MLEAC=1;MLEAF=0.500;MQ=33.11;MQ0=0;MQRankSum=1.467;QD=3.70;ReadPosRankSum=-1.323;SB=-5.180e+02	GT:AD:DP:GQ:PL	0/1:65,74:139:99:544,0,262
chrIV	1503992	.	A	C	207.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.152;DP=142;Dels=0.00;FS=0.682;HaplotypeScore=54.7000;MLEAC=1;MLEAF=0.500;MQ=33.73;MQ0=0;MQRankSum=-1.653;QD=1.46;ReadPosRankSum=0.329;SB=-3.180e+02	GT:AD:DP:GQ:PL	0/1:97,45:142:99:237,0,565
chrIV	1503993	.	G	A	617.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.783;DP=142;Dels=0.00;FS=0.682;HaplotypeScore=54.7000;MLEAC=1;MLEAF=0.500;MQ=33.73;MQ0=0;MQRankSum=1.600;QD=4.35;ReadPosRankSum=-0.412;SB=-8.840e+02	GT:AD:DP:GQ:PL	0/1:45,97:142:99:647,0,225
chrIV	1503995	.	A	G	212.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.077;DP=146;Dels=0.00;FS=0.688;HaplotypeScore=35.6122;MLEAC=1;MLEAF=0.500;MQ=33.94;MQ0=0;MQRankSum=-0.771;QD=1.45;ReadPosRankSum=0.017;SB=-3.450e+02	GT:AD:DP:GQ:PL	0/1:101,45:146:99:242,0,613
chrIV	1503997	.	C	T	215.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;DP=147;Dels=0.00;FS=1.482;HaplotypeScore=37.1896;MLEAC=1;MLEAF=0.500;MQ=34.18;MQ0=0;MQRankSum=-1.949;QD=1.46;ReadPosRankSum=-0.186;SB=-3.170e+02	GT:AD:DP:GQ:PL	0/1:101,45:147:99:245,0,614
chrIV	1504001	.	G	A	676.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.181;DP=146;Dels=0.00;FS=5.303;HaplotypeScore=36.4164;MLEAC=1;MLEAF=0.500;MQ=35.20;MQ0=0;MQRankSum=0.010;QD=4.63;ReadPosRankSum=4.465;SB=-6.000e+02	GT:AD:DP:GQ:PL	0/1:60,86:146:99:706,0,231
chrIV	1504017	.	G	C	85.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;DP=138;Dels=0.00;FS=25.658;HaplotypeScore=22.0757;MLEAC=1;MLEAF=0.500;MQ=39.35;MQ0=0;MQRankSum=-3.145;QD=0.62;ReadPosRankSum=-2.269;SB=-8.301e+01	GT:AD:DP:GQ:PL	0/1:107,29:138:99:115,0,1073
chrIV	1504018	.	A	T	90.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630;DP=141;Dels=0.00;FS=20.872;HaplotypeScore=32.9105;MLEAC=1;MLEAF=0.500;MQ=39.70;MQ0=0;MQRankSum=-2.229;QD=0.64;ReadPosRankSum=-3.235;SB=-1.000e+02	GT:AD:DP:GQ:PL	0/1:109,32:141:99:120,0,1113
chrIV	1504142	.	G	A	731	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=21.50;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:81:764,81,0
chrIV	1504298	.	A	G	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.71;MQ0=1;QD=4.71;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:6:50,6,0
chrIV	1504337	.	G	A	403.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.540;DP=39;Dels=0.00;FS=25.099;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=37.39;MQ0=2;MQRankSum=2.656;QD=10.33;ReadPosRankSum=2.734;SB=-1.304e+01	GT:AD:DP:GQ:PL	1/1:8,31:39:24:436,24,0
chrIV	1504951	.	C	G	3593.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.11;SB=-1.950e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3593,396,0
chrIV	1505125	.	A	T	1797	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=25.31;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1830,192,0
chrIV	1505138	.	T	A	1679	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.65;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1712,180,0
chrIV	1505562	.	A	G	2049	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.39;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2082,222,0
chrIV	1505632	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.51;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1754,195,0
chrIV	1505642	.	C	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.30;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1677,180,0
chrIV	1505703	.	A	G	1714	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0543;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=18.43;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1747,189,0
chrIV	1505716	.	T	G	1738	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=17.56;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:1,96:99:99:1771,195,0
chrIV	1505719	.	T	G	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.748;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=-1.036;QD=17.97;ReadPosRankSum=2.377;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:3,99:102:99:1866,204,0
chrIV	1505741	.	C	G	2092	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=18.68;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2125,237,0
chrIV	1506343	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1125,123,0
chrIV	1508583	.	G	T	2406	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.82;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2439,258,0
chrIV	1509719	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.22;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1428,156,0
chrIV	1509750	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1386,150,0
chrIV	1509977	.	T	A	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.022;QD=22.48;ReadPosRankSum=1.687;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1764,183,0
chrIV	1510411	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.23;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1498,162,0
chrIV	1510510	.	C	A	1919	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.20;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1952,204,0
chrIV	1511013	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.74;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1968,210,0
chrIV	1511041	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.66;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1727,189,0
chrIV	1511078	.	C	T	1382	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.93;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1415,150,0
chrIV	1511255	.	T	C	1639	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.42;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1672,186,0
chrIV	1511750	.	C	T	2851	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.27;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2884,303,0
chrIV	1511860	.	G	A	3627.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.91;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,139:140:99:3627,384,0
chrIV	1512102	.	G	A	4159.01	PASS	AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.63;SB=-1.769e+03	GT:AD:DP:GQ:PL	1/1:0,176:176:99:4159,430,0
chrIV	1512312	.	G	A	2274	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2307,249,0
chrIV	1513649	.	T	C	2453	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=19.16;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2486,270,0
chrIV	1513657	.	A	G	2461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=6.128;HaplotypeScore=4.6248;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.127;QD=19.69;ReadPosRankSum=1.704;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,122:125:99:2494,270,0
chrIV	1514258	.	T	C	2142	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.64;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2175,231,0
chrIV	1514440	.	C	T	2332	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.64;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2365,243,0
chrIV	1514500	.	A	G	2335	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.89;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2368,255,0
chrIV	1514528	.	T	C	1945	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.499;QD=21.85;ReadPosRankSum=1.654;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1978,216,0
chrIV	1514569	.	A	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.52;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1733,186,0
chrIV	1514618	.	T	G	2096	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.78;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2129,228,0
chrIV	1514724	.	G	A	3233.06	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.87;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,127:130:99:3268,345,0
chrIV	1514773	.	A	C	2911	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.10;SB=-1.566e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2944,318,0
chrIV	1515052	.	T	C	3329.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=9.0378;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.542;QD=20.05;ReadPosRankSum=1.648;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:1,164:166:99:3329,363,0
chrIV	1515183	.	T	C	4748.01	PASS	AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=4.7163;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.39;SB=-2.028e+03	GT:AD:DP:GQ:PL	1/1:0,203:203:99:4748,519,0
chrIV	1515245	.	A	G	2567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.8402;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.738;QD=21.04;ReadPosRankSum=1.619;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2600,282,0
chrIV	1515254	.	T	C	2606	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.54;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2639,279,0
chrIV	1515303	.	A	T	3687.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=9.8551;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.332;QD=23.48;ReadPosRankSum=1.688;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:1,156:157:99:3687,382,0
chrIV	1515498	.	G	C	3583.01	PASS	AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=11.9602;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.58;SB=-1.523e+03	GT:AD:DP:GQ:PL	1/1:0,165:166:99:3583,387,0
chrIV	1515965	.	G	T	2582	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.70;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2615,273,0
chrIV	1516047	.	T	C	2204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=6.500;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.876;QD=21.19;ReadPosRankSum=2.163;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:2,101:104:99:2237,246,0
chrIV	1516077	.	C	A	2521	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.56;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2554,264,0
chrIV	1516115	.	C	A	2497	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.34;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2530,267,0
chrIV	1516658	.	T	C	3457.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.617;QD=19.53;ReadPosRankSum=1.693;SB=-1.859e+03	GT:AD:DP:GQ:PL	1/1:1,176:177:99:3457,375,0
chrIV	1516718	.	T	C	2554	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=16.0584;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=19.65;SB=-1.624e+03	GT:AD:DP:GQ:PL	1/1:2,127:129:99:2587,279,0
chrIV	1516981	.	A	G	3382.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.199;QD=21.96;ReadPosRankSum=2.322;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:2,152:154:99:3382,363,0
chrIV	1517095	.	C	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.00;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1708,183,0
chrIV	1517488	.	G	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1058,111,0
chrIV	1517745	.	C	T	2583	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.08;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2616,276,0
chrIV	1518269	.	A	G	2245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=5.185;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.522;QD=22.45;ReadPosRankSum=1.662;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2278,249,0
chrIV	1518425	.	G	A	3830.01	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.93;SB=-1.927e+03	GT:AD:DP:GQ:PL	1/1:0,166:167:99:3830,420,0
chrIV	1519267	.	T	C	1957	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=21.27;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,89:92:99:1990,216,0
chrIV	1519512	.	T	C	2426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=15.9765;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.842;QD=22.05;ReadPosRankSum=1.700;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:1,108:110:99:2459,267,0
chrIV	1519952	.	T	A	1755	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1788,189,0
chrIV	1520098	.	G	C	1912	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.90;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1945,213,0
chrIV	1520281	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.00;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1233,126,0
chrIV	1520393	.	C	T	1851	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.34;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1884,198,0
chrIV	1520515	.	G	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.65;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1527,165,0
chrIV	1520721	.	T	C	1510	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.88;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1543,165,0
chrIV	1520764	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=0.658;QD=16.31;ReadPosRankSum=2.394;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1468,159,0
chrIV	1520765	.	A	G	1459	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-0.411;QD=16.77;ReadPosRankSum=2.337;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1492,165,0
chrIV	1520802	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=14.34;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1166,126,0
chrIV	1520813	.	C	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=16.15;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1228,126,0
chrIV	1520843	.	G	A	1246	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.80;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1279,135,0
chrIV	1521369	.	A	C	2031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=95;Dels=0.00;FS=10.218;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.359;QD=21.38;ReadPosRankSum=2.838;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:3,90:95:99:2064,225,0
chrIV	1521484	.	G	A	2708	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2741,282,0
chrIV	1521562	.	A	G	1914	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1947,213,0
chrIV	1521852	.	G	A	2331	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.0236;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.21;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,124:128:99:2364,255,0
chrIV	1522055	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.11;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1647,174,0
chrIV	1522205	.	G	C	2131	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1792;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.67;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2164,231,0
chrIV	1522617	.	T	C	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.410;QD=22.34;ReadPosRankSum=1.652;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1954,213,0
chrIV	1522830	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=22.52;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1497,165,0
chrIV	1522960	.	C	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8151;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=16.17;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1359,150,0
chrIV	1523009	.	T	G	1392	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=17.85;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1425,156,0
chrIV	1523146	.	T	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.12;MQ0=0;QD=15.12;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1137,123,0
chrIV	1523147	.	T	G	1099	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=15.26;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1132,123,0
chrIV	1523161	.	A	T	107.26	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.92;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:15:140,15,0
chrIV	1523176	.	T	C	101.26	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.47;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:0,7:7:15:134,15,0
chrIV	1523182	.	T	A	143.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.89;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:176,18,0
chrIV	1523198	.	T	C	110.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.77;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:143,18,0
chrIV	1523202	.	T	C	103.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=6.7656;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:136,18,0
chrIV	1523232	.	A	C	35.08	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=8;Dels=0.00;FS=8.451;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=0;MQRankSum=0.742;QD=4.38;ReadPosRankSum=0.742;SB=-2.949e+00	GT:AD:DP:GQ:PL	0/1:1,6:8:15:65,0,15
chrIV	1523305	.	C	T	186.03	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.76;MQ0=18;QD=3.21;SB=-3.878e-02	GT:AD:DP:GQ:PL	1/1:5,53:58:24:219,24,0
chrIV	1523350	.	T	G	105.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.639;DP=62;Dels=0.00;FS=41.209;HaplotypeScore=8.3726;MLEAC=2;MLEAF=1.00;MQ=15.24;MQ0=25;MQRankSum=3.008;QD=1.70;ReadPosRankSum=1.687;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:24,38:62:15:138,15,0
chrIV	1523356	.	G	A	165.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.063;DP=65;Dels=0.00;FS=35.429;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=15.75;MQ0=27;MQRankSum=2.878;QD=2.54;ReadPosRankSum=0.855;SB=-7.470e-02	GT:AD:DP:GQ:PL	1/1:24,40:65:21:198,21,0
chrIV	1523586	.	T	A	275	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.60;MQ0=7;QD=11.96;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:33:308,33,0
chrIV	1523658	.	G	T	248	filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=12.80;MQ0=31;QD=3.88;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,64:64:33:281,33,0
chrIV	1523871	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=65;Dels=0.00;FS=7.132;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=3;MQRankSum=1.676;QD=23.65;ReadPosRankSum=1.006;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:4,61:65:99:1570,165,0
chrIV	1524299	.	C	A	3179	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=1;QD=23.55;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,129:135:99:3212,342,0
chrIV	1524313	.	C	T	2520	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5274;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=1;MQRankSum=3.669;QD=20.16;ReadPosRankSum=1.203;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:7,117:125:99:2553,257,0
chrIV	1524357	.	A	C	576.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.763;DP=162;Dels=0.00;FS=111.466;HaplotypeScore=25.1532;MLEAC=1;MLEAF=0.500;MQ=20.68;MQ0=11;MQRankSum=7.008;QD=3.56;ReadPosRankSum=0.287;SB=-2.390e+02	GT:AD:DP:GQ:PL	0/1:105,57:162:99:606,0,135
chrIV	1524372	.	C	G	613	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.202;DP=143;Dels=0.00;FS=63.448;HaplotypeScore=30.7126;MLEAC=2;MLEAF=1.00;MQ=16.75;MQ0=12;MQRankSum=2.632;QD=4.29;ReadPosRankSum=1.548;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:66,77:143:43:646,43,0
chrIV	1524379	.	G	A	81.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.220;DP=148;Dels=0.00;FS=34.866;HaplotypeScore=23.5405;MLEAC=1;MLEAF=0.500;MQ=16.89;MQ0=13;MQRankSum=-1.850;QD=0.55;ReadPosRankSum=4.283;SB=-1.821e+00	GT:AD:DP:GQ:PL	0/1:115,33:148:99:111,0,505
chrIV	1524399	.	G	A	562.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.124;DP=146;Dels=0.00;FS=230.230;HaplotypeScore=32.1852;MLEAC=1;MLEAF=0.500;MQ=18.07;MQ0=13;MQRankSum=7.044;QD=3.85;ReadPosRankSum=-5.472;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:99,47:146:99:592,0,143
chrIV	1524400	.	G	A	813	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.957;DP=145;Dels=0.00;FS=65.968;HaplotypeScore=32.1852;MLEAC=2;MLEAF=1.00;MQ=18.09;MQ0=13;MQRankSum=3.603;QD=5.61;ReadPosRankSum=-4.892;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:61,84:145:61:846,61,0
chrIV	1524412	.	G	T	314.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;DP=131;Dels=0.00;FS=190.553;HaplotypeScore=12.8442;MLEAC=1;MLEAF=0.500;MQ=20.16;MQ0=10;MQRankSum=7.013;QD=2.40;ReadPosRankSum=0.706;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:89,37:131:99:344,0,151
chrIV	1524413	.	G	A	398.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;DP=132;Dels=0.00;FS=200.778;HaplotypeScore=15.2103;MLEAC=1;MLEAF=0.500;MQ=20.52;MQ0=10;MQRankSum=7.284;QD=3.02;ReadPosRankSum=0.721;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:94,38:132:99:428,0,142
chrIV	1524416	.	G	A	402.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.803;DP=136;Dels=0.00;FS=167.792;HaplotypeScore=17.5216;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=9;MQRankSum=6.654;QD=2.96;ReadPosRankSum=2.188;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:88,46:136:99:432,0,142
chrIV	1524418	.	C	A	407.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.326;DP=135;Dels=0.00;FS=134.922;HaplotypeScore=15.5681;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=8;MQRankSum=6.727;QD=3.01;ReadPosRankSum=1.693;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:82,51:135:99:437,0,142
chrIV	1524506	.	G	T	1804	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=29.6882;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=3;QD=14.20;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:1837,201,0
chrIV	1524511	.	C	G	1312	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.886;DP=117;Dels=0.00;FS=19.411;HaplotypeScore=15.4756;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=2;MQRankSum=1.821;QD=11.21;ReadPosRankSum=1.454;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:12,93:117:78:1345,78,0
chrIV	1524519	.	A	T	1011	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=99;Dels=0.00;FS=4.586;HaplotypeScore=21.2358;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=2;MQRankSum=0.122;QD=10.21;ReadPosRankSum=-1.167;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:5,94:99:37:1044,37,0
chrIV	1524526	.	T	C	775	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=28.7853;MLEAC=2;MLEAF=1.00;MQ=21.88;MQ0=2;QD=9.94;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,73:78:93:808,93,0
chrIV	1524527	.	G	A	663.64	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;DP=77;Dels=0.00;FS=8.329;HaplotypeScore=28.7853;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=2;MQRankSum=0.053;QD=8.62;ReadPosRankSum=-1.625;SB=-1.107e+02	GT:AD:DP:GQ:PL	0/1:5,72:77:5:693,0,5
chrIV	1524534	.	A	C	539.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DP=81;Dels=0.00;FS=11.167;HaplotypeScore=16.8428;MLEAC=1;MLEAF=0.500;MQ=22.44;MQ0=2;MQRankSum=0.164;QD=6.65;ReadPosRankSum=-1.320;SB=-5.502e+01	GT:AD:DP:GQ:PL	0/1:8,73:81:42:569,0,42
chrIV	1524536	.	A	T	501.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;DP=81;Dels=0.00;FS=83.821;HaplotypeScore=16.0541;MLEAC=1;MLEAF=0.500;MQ=22.44;MQ0=2;MQRankSum=1.997;QD=6.19;ReadPosRankSum=-1.470;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:23,58:81:80:531,0,80
chrIV	1524542	.	C	T	831	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.3693;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=2;QD=9.78;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:96:864,96,0
chrIV	1524595	.	G	A	2098	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.228;DP=179;Dels=0.00;FS=41.001;HaplotypeScore=69.8651;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=1;MQRankSum=1.978;QD=11.72;ReadPosRankSum=-1.925;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:10,169:179:99:2131,145,0
chrIV	1524599	.	T	C	1548.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.805;DP=169;Dels=0.00;FS=257.147;HaplotypeScore=60.6708;MLEAC=1;MLEAF=0.500;MQ=26.65;MQ0=0;MQRankSum=5.558;QD=9.16;ReadPosRankSum=3.636;SB=-2.320e+02	GT:AD:DP:GQ:PL	0/1:46,123:169:89:1578,0,89
chrIV	1524600	.	A	G	2097	SnpCluster	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=61.6441;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=12.48;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,167:168:99:2130,243,0
chrIV	1524601	.	C	T	1710.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=9.664;DP=172;Dels=0.00;FS=436.243;HaplotypeScore=69.4097;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=6.063;QD=9.94;ReadPosRankSum=5.274;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:65,107:172:76:1740,0,76
chrIV	1524606	.	A	G	1589.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.828;DP=181;Dels=0.00;FS=283.159;HaplotypeScore=84.1302;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=0;MQRankSum=4.512;QD=8.78;ReadPosRankSum=3.448;SB=-2.310e+02	GT:AD:DP:GQ:PL	0/1:53,128:181:66:1619,0,66
chrIV	1524609	.	G	A	1698.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;DP=184;Dels=0.00;FS=442.374;HaplotypeScore=125.2902;MLEAC=1;MLEAF=0.500;MQ=26.46;MQ0=1;MQRankSum=5.412;QD=9.23;ReadPosRankSum=3.339;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:70,114:184:79:1728,0,79
chrIV	1524612	.	T	C	2051	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;DP=189;Dels=0.00;FS=117.304;HaplotypeScore=110.3811;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=1;MQRankSum=1.687;QD=10.85;ReadPosRankSum=-0.709;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:27,162:189:99:2084,141,0
chrIV	1524614	.	G	C	48.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;DP=189;Dels=0.00;FS=441.472;HaplotypeScore=137.5701;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=1;MQRankSum=-1.905;QD=0.25;ReadPosRankSum=-1.157;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:119,70:189:78:78,0,1713
chrIV	1524615	.	C	A	2257	SnpCluster	AC=2;AF=1.00;AN=2;DP=189;Dels=0.00;FS=0.000;HaplotypeScore=156.8242;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=1;QD=11.94;SB=-1.521e+03	GT:AD:DP:GQ:PL	1/1:0,189:189:99:2290,249,0
chrIV	1524619	.	C	T	1952	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=6.173;DP=187;Dels=0.00;FS=113.535;HaplotypeScore=142.9734;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=2;MQRankSum=0.915;QD=10.44;ReadPosRankSum=1.088;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:26,161:187:72:1985,72,0
chrIV	1524630	.	A	G	1425.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;DP=344;Dels=0.00;FS=184.283;HaplotypeScore=162.5945;MLEAC=1;MLEAF=0.500;MQ=28.80;MQ0=11;MQRankSum=-0.365;QD=4.14;ReadPosRankSum=8.461;SB=-6.450e+02	GT:AD:DP:GQ:PL	0/1:171,172:344:99:1455,0,869
chrIV	1524638	.	G	T	1289.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.850;DP=394;Dels=0.00;FS=163.050;HaplotypeScore=193.8307;MLEAC=1;MLEAF=0.500;MQ=27.79;MQ0=20;MQRankSum=0.575;QD=3.27;ReadPosRankSum=4.734;SB=-3.810e+02	GT:AD:DP:GQ:PL	0/1:216,138:394:99:1319,0,2242
chrIV	1524640	.	A	C	1142.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DP=408;Dels=0.00;FS=203.442;HaplotypeScore=190.1299;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=23;MQRankSum=3.504;QD=2.80;ReadPosRankSum=2.711;SB=-2.990e+02	GT:AD:DP:GQ:PL	0/1:274,133:408:99:1172,0,2552
chrIV	1524652	.	G	A	4583.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=6.037;DP=406;Dels=0.00;FS=13.543;HaplotypeScore=223.9718;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=32;MQRankSum=6.417;QD=11.29;ReadPosRankSum=-0.051;SB=-1.743e+03	GT:AD:DP:GQ:PL	1/1:64,342:406:99:4583,298,0
chrIV	1524653	.	G	T	432.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;DP=427;Dels=0.00;FS=154.399;HaplotypeScore=228.9212;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=34;MQRankSum=1.219;QD=1.01;ReadPosRankSum=-3.798;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:278,88:427:99:462,0,3189
chrIV	1524683	.	G	A	3291.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;DP=470;Dels=0.00;FS=12.993;HaplotypeScore=92.0579;MLEAC=1;MLEAF=0.500;MQ=25.63;MQ0=40;MQRankSum=4.307;QD=7.00;ReadPosRankSum=2.323;SB=-3.450e+02	GT:AD:DP:GQ:PL	0/1:127,342:470:99:3291,0,697
chrIV	1524696	.	C	T	420.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.169;DP=470;Dels=0.00;FS=49.369;HaplotypeScore=138.2078;MLEAC=1;MLEAF=0.500;MQ=25.35;MQ0=41;MQRankSum=0.093;QD=0.89;ReadPosRankSum=1.564;SB=-4.050e+02	GT:AD:DP:GQ:PL	0/1:341,129:470:99:450,0,3653
chrIV	1524707	.	G	A	3605.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.215;DP=453;Dels=0.00;FS=90.545;HaplotypeScore=157.1875;MLEAC=1;MLEAF=0.500;MQ=25.37;MQ0=42;MQRankSum=2.802;QD=7.96;ReadPosRankSum=-5.149;SB=-1.170e+02	GT:AD:DP:GQ:PL	0/1:148,304:453:99:3605,0,525
chrIV	1524727	.	A	G	215.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.203;DP=290;Dels=0.00;FS=87.088;HaplotypeScore=116.0227;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=36;MQRankSum=-0.491;QD=0.74;ReadPosRankSum=-4.171;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:236,54:290:99:245,0,2068
chrIV	1524740	.	C	T	814.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.093;DP=205;Dels=0.00;FS=14.645;HaplotypeScore=77.3612;MLEAC=1;MLEAF=0.500;MQ=20.37;MQ0=21;MQRankSum=-1.164;QD=3.97;ReadPosRankSum=0.382;SB=-4.270e+02	GT:AD:DP:GQ:PL	0/1:77,127:205:99:844,0,698
chrIV	1524745	.	T	C	502.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;DP=183;Dels=0.00;FS=47.673;HaplotypeScore=103.9975;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=18;MQRankSum=1.049;QD=2.74;ReadPosRankSum=2.242;SB=-2.980e+02	GT:AD:DP:GQ:PL	0/1:89,63:183:99:532,0,712
chrIV	1524751	.	C	T	291.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.474;DP=129;Dels=0.00;FS=4.603;HaplotypeScore=47.3239;MLEAC=1;MLEAF=0.500;MQ=19.87;MQ0=15;MQRankSum=-6.067;QD=2.26;ReadPosRankSum=0.126;SB=-3.301e+01	GT:AD:DP:GQ:PL	0/1:58,71:129:99:321,0,691
chrIV	1524776	.	G	T	67.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.448;DP=75;Dels=0.00;FS=16.026;HaplotypeScore=31.7758;MLEAC=1;MLEAF=0.500;MQ=19.37;MQ0=16;MQRankSum=0.984;QD=0.89;ReadPosRankSum=-0.131;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,26:75:97:97,0,489
chrIV	1524779	.	T	A	713	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=75;Dels=0.00;FS=8.930;HaplotypeScore=31.9362;MLEAC=2;MLEAF=1.00;MQ=19.16;MQ0=20;MQRankSum=0.292;QD=9.51;ReadPosRankSum=2.360;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:87:746,87,0
chrIV	1524784	.	A	G	371.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;DP=78;Dels=0.00;FS=42.802;HaplotypeScore=42.5914;MLEAC=1;MLEAF=0.500;MQ=18.73;MQ0=21;MQRankSum=1.566;QD=4.76;ReadPosRankSum=3.697;SB=-5.902e+01	GT:AD:DP:GQ:PL	0/1:42,35:78:99:401,0,213
chrIV	1524796	.	G	A	453.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;DP=79;Dels=0.00;FS=23.267;HaplotypeScore=29.6734;MLEAC=1;MLEAF=0.500;MQ=19.06;MQ0=25;MQRankSum=3.423;QD=5.73;ReadPosRankSum=1.612;SB=-7.002e+01	GT:AD:DP:GQ:PL	0/1:42,37:79:52:483,0,52
chrIV	1524798	.	C	T	449.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.103;DP=81;Dels=0.00;FS=29.373;HaplotypeScore=38.3052;MLEAC=1;MLEAF=0.500;MQ=18.90;MQ0=25;MQRankSum=2.290;QD=5.54;ReadPosRankSum=0.942;SB=-6.902e+01	GT:AD:DP:GQ:PL	0/1:38,38:81:50:479,0,50
chrIV	1524833	.	T	C	475.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.362;DP=142;Dels=0.00;FS=2.705;HaplotypeScore=45.4771;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=31;MQRankSum=1.751;QD=3.35;ReadPosRankSum=1.962;SB=-7.901e+01	GT:AD:DP:GQ:PL	0/1:90,52:142:99:505,0,688
chrIV	1524838	.	G	T	182.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.314;DP=144;Dels=0.00;FS=43.966;HaplotypeScore=63.8955;MLEAC=1;MLEAF=0.500;MQ=20.46;MQ0=30;MQRankSum=0.425;QD=1.26;ReadPosRankSum=-2.869;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:105,39:144:99:212,0,1066
chrIV	1524841	.	A	G	385.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;DP=147;Dels=0.00;FS=28.315;HaplotypeScore=63.2760;MLEAC=1;MLEAF=0.500;MQ=20.48;MQ0=32;MQRankSum=-0.852;QD=2.62;ReadPosRankSum=0.222;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:93,53:147:99:415,0,916
chrIV	1524847	.	A	G	135.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;DP=159;Dels=0.00;FS=56.337;HaplotypeScore=50.7031;MLEAC=1;MLEAF=0.500;MQ=20.71;MQ0=38;MQRankSum=0.640;QD=0.85;ReadPosRankSum=-4.157;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:119,39:159:99:165,0,910
chrIV	1524867	.	C	G	63.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;DP=205;Dels=0.00;FS=16.605;HaplotypeScore=5.2931;MLEAC=1;MLEAF=0.500;MQ=20.51;MQ0=41;MQRankSum=3.334;QD=0.31;ReadPosRankSum=-1.998;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:186,18:205:93:93,0,1561
chrIV	1524886	.	T	C	3403.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=5.588;DP=281;Dels=0.00;FS=31.068;HaplotypeScore=10.7595;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=42;MQRankSum=-0.740;QD=12.11;ReadPosRankSum=4.457;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:11,264:281:99:3403,365,0
chrIV	1524903	.	A	G	686.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.006;DP=312;Dels=0.00;FS=52.729;HaplotypeScore=69.8394;MLEAC=1;MLEAF=0.500;MQ=26.58;MQ0=34;MQRankSum=-4.867;QD=2.20;ReadPosRankSum=-1.512;SB=-1.510e+02	GT:AD:DP:GQ:PL	0/1:224,87:312:99:716,0,2854
chrIV	1524930	.	C	T	403.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.824;DP=324;Dels=0.00;FS=13.881;HaplotypeScore=634.1125;MLEAC=1;MLEAF=0.500;MQ=27.43;MQ0=26;MQRankSum=3.685;QD=1.24;ReadPosRankSum=0.867;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:243,81:324:99:433,0,3304
chrIV	1524931	.	C	A	302.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.760;DP=330;Dels=0.00;FS=0.647;HaplotypeScore=636.2234;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=26;MQRankSum=-0.652;QD=0.92;ReadPosRankSum=-0.767;SB=-1.490e+02	GT:AD:DP:GQ:PL	0/1:272,58:330:99:332,0,3436
chrIV	1524944	.	G	A	1461.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.629;DP=338;Dels=0.00;FS=3.173;HaplotypeScore=328.9178;MLEAC=1;MLEAF=0.500;MQ=27.91;MQ0=17;MQRankSum=2.233;QD=4.32;ReadPosRankSum=0.948;SB=-2.330e+02	GT:AD:DP:GQ:PL	0/1:223,114:337:99:1491,0,1746
chrIV	1524949	.	G	A	391.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.625;DP=353;Dels=0.00;FS=16.798;HaplotypeScore=106.5911;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=17;MQRankSum=-5.833;QD=1.11;ReadPosRankSum=2.028;SB=-1.680e+02	GT:AD:DP:GQ:PL	0/1:279,70:353:99:421,0,3680
chrIV	1525003	.	G	C	1860.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;DP=261;Dels=0.00;FS=20.015;HaplotypeScore=133.2136;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=12;MQRankSum=-0.235;QD=7.13;ReadPosRankSum=3.995;SB=-5.980e+02	GT:AD:DP:GQ:PL	0/1:60,158:260:99:1890,0,813
chrIV	1525011	.	G	A	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;DP=273;Dels=0.05;FS=29.711;HaplotypeScore=168.3523;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=14;MQRankSum=-1.397;QD=0.05;ReadPosRankSum=-2.432;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:225,28:260:44:44,0,2746
chrIV	1525035	.	C	A	99.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.443;DP=212;Dels=0.00;FS=1.949;HaplotypeScore=147.0271;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=15;MQRankSum=2.782;QD=0.47;ReadPosRankSum=-0.783;SB=-4.007e+00	GT:AD:DP:GQ:PL	0/1:187,24:212:99:129,0,2118
chrIV	1525041	.	G	A	207.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.137;DP=198;Dels=0.00;FS=9.484;HaplotypeScore=175.3850;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=14;MQRankSum=-1.381;QD=1.05;ReadPosRankSum=-5.142;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:159,39:198:99:237,0,948
chrIV	1525062	.	A	G	240.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;DP=113;Dels=0.00;FS=18.165;HaplotypeScore=55.7647;MLEAC=1;MLEAF=0.500;MQ=24.18;MQ0=11;MQRankSum=-3.457;QD=2.12;ReadPosRankSum=0.826;SB=-1.520e+02	GT:AD:DP:GQ:PL	0/1:67,46:113:99:270,0,748
chrIV	1525098	.	G	A	185.04	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=7.2573;MLEAC=1;MLEAF=0.500;MQ=18.96;MQ0=7;QD=5.97;SB=-1.339e+02	GT:AD:DP:GQ:PL	1/1:0,26:31:24:218,24,0
chrIV	1525125	.	T	C	39.97	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=11.6144;MLEAC=2;MLEAF=1.00;MQ=20.31;MQ0=1;QD=2.10;SB=-2.296e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:9:72,9,0
chrIV	1525185	.	T	A	84.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;DP=58;Dels=0.00;FS=3.274;HaplotypeScore=8.0918;MLEAC=1;MLEAF=0.500;MQ=22.85;MQ0=4;MQRankSum=-1.538;QD=1.45;ReadPosRankSum=-1.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,27:58:99:114,0,160
chrIV	1525187	.	A	G	99.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266;DP=58;Dels=0.00;FS=2.619;HaplotypeScore=9.0876;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=4;MQRankSum=2.853;QD=1.71;ReadPosRankSum=2.413;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,21:58:99:129,0,200
chrIV	1525216	.	C	G	599	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=72.2674;MLEAC=2;MLEAF=1.00;MQ=23.41;MQ0=3;QD=8.94;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,64:66:75:632,75,0
chrIV	1525221	.	G	A	32.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=182.6556;MLEAC=1;MLEAF=0.500;MQ=22.98;MQ0=3;MQRankSum=1.958;QD=0.42;ReadPosRankSum=1.588;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,7:77:62:62,0,182
chrIV	1525236	.	G	A	220.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=210.9046;MLEAC=2;MLEAF=1.00;MQ=23.23;MQ0=2;MQRankSum=0.252;QD=3.55;ReadPosRankSum=-2.178;SB=-2.702e+01	GT:AD:DP:GQ:PL	1/1:4,58:62:27:253,27,0
chrIV	1525267	.	G	A	211.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.582;DP=82;Dels=0.00;FS=8.721;HaplotypeScore=88.4364;MLEAC=1;MLEAF=0.500;MQ=24.16;MQ0=0;MQRankSum=0.200;QD=2.57;ReadPosRankSum=-1.315;SB=-3.101e+01	GT:AD:DP:GQ:PL	0/1:52,30:82:99:241,0,208
chrIV	1525269	.	A	G	406.06	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.611;DP=81;Dels=0.00;FS=9.878;HaplotypeScore=88.4364;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=0;MQRankSum=-1.289;QD=5.01;ReadPosRankSum=-0.878;SB=-6.072e-02	GT:AD:DP:GQ:PL	0/1:26,55:81:16:436,0,16
chrIV	1525272	.	A	G	517	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=86.7536;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=0;MQRankSum=-0.964;QD=6.54;ReadPosRankSum=2.387;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:2,77:79:69:550,69,0
chrIV	1525274	.	T	A,G	555.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=34.1460;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.11;MQ0=0;QD=7.21;SB=-3.201e+01	GT:AD:DP:GQ:PL	1/2:1,46,29:77:99:615,159,100,455,0,431
chrIV	1525288	.	G	C	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.685;DP=84;Dels=0.00;FS=2.532;HaplotypeScore=46.4878;MLEAC=1;MLEAF=0.500;MQ=24.16;MQ0=0;MQRankSum=-2.889;QD=0.26;ReadPosRankSum=-0.221;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:61,23:84:52:52,0,431
chrIV	1525290	.	G	A	375.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=47.4745;MLEAC=1;MLEAF=0.500;MQ=24.16;MQ0=0;MQRankSum=0.835;QD=4.46;ReadPosRankSum=0.248;SB=-5.701e+01	GT:AD:DP:GQ:PL	0/1:18,62:84:46:405,0,46
chrIV	1525313	.	T	G	130.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.071;DP=68;Dels=0.00;FS=4.583;HaplotypeScore=82.2570;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=0;MQRankSum=1.482;QD=1.92;ReadPosRankSum=0.437;SB=-2.716e-01	GT:AD:DP:GQ:PL	0/1:55,13:68:9:160,0,9
chrIV	1525357	.	C	G	95.26	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=30.9564;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=8.66;SB=-2.685e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:128,15,0
chrIV	1525370	.	C	G	68.51	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=15.6267;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=6.23;SB=-4.542e-01	GT:AD:DP:GQ:PL	1/1:0,7:11:12:101,12,0
chrIV	1525481	.	T	C	208.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;DP=118;Dels=0.00;FS=67.619;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=13.57;MQ0=67;MQRankSum=-1.601;QD=1.76;ReadPosRankSum=1.934;SB=-4.733e-01	GT:AD:DP:GQ:PL	0/1:22,96:118:48:238,0,48
chrIV	1525482	.	G	T	215.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.652;DP=123;Dels=0.00;FS=73.575;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=13.32;MQ0=71;MQRankSum=-1.479;QD=1.75;ReadPosRankSum=2.308;SB=-4.733e-01	GT:AD:DP:GQ:PL	0/1:22,101:123:46:245,0,46
chrIV	1525536	.	A	G	134.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;DP=202;Dels=0.00;FS=86.802;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=9.78;MQ0=152;MQRankSum=-2.256;QD=0.66;ReadPosRankSum=-2.610;SB=-4.348e-03	GT:AD:DP:GQ:PL	0/1:38,162:202:99:164,0,108
chrIX	19837	.	G	T	1211.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;DP=155;Dels=0.00;FS=1.303;HaplotypeScore=8.7809;MLEAC=1;MLEAF=0.500;MQ=44.18;MQ0=0;MQRankSum=-0.503;QD=7.81;ReadPosRankSum=-1.129;SB=-5.660e+02	GT:AD:DP:GQ:PL	0/1:71,83:155:99:1241,0,1140
chrIX	20039	.	A	C	1241.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DP=165;Dels=0.00;FS=3.201;HaplotypeScore=10.2963;MLEAC=1;MLEAF=0.500;MQ=53.13;MQ0=2;MQRankSum=-4.643;QD=7.52;ReadPosRankSum=-2.116;SB=-3.360e+02	GT:AD:DP:GQ:PL	0/1:92,71:165:99:1271,0,1423
chrIX	20260	.	G	A	578	filter	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=7;QD=7.22;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:66:611,66,0
chrIX	20296	.	C	T	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=15.94;MQ0=6;QD=0.40;SB=-3.051e+01	GT:AD:DP:GQ:PL	1/1:0,64:64:6:57,6,0
chrIX	20299	.	A	G	42.97	filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=16.35;MQ0=6;QD=0.67;SB=-7.872e+01	GT:AD:DP:GQ:PL	1/1:0,64:64:9:75,9,0
chrIX	20325	.	A	G	1144	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=109;Dels=0.00;FS=3.578;HaplotypeScore=8.0318;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=6;MQRankSum=0.424;QD=10.50;ReadPosRankSum=-1.343;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,104:109:99:1177,135,0
chrIX	20341	.	C	T	577.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;DP=130;Dels=0.00;FS=2.266;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=46.56;MQ0=5;MQRankSum=-0.546;QD=4.44;ReadPosRankSum=-0.640;SB=-4.290e+02	GT:AD:DP:GQ:PL	0/1:62,68:130:99:607,0,775
chrIX	20494	.	A	G	2835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;DP=147;Dels=0.00;FS=6.089;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=1;MQRankSum=-2.483;QD=19.29;ReadPosRankSum=2.911;SB=-1.710e+03	GT:AD:DP:GQ:PL	1/1:3,144:147:99:2868,318,0
chrIX	20889	.	C	T	2481	filter	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=5;QD=19.54;SB=-1.395e+03	GT:AD:DP:GQ:PL	1/1:0,125:127:99:2514,276,0
chrIX	20950	.	T	C	433.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=105;Dels=0.00;FS=1.706;HaplotypeScore=5.4503;MLEAC=1;MLEAF=0.500;MQ=25.76;MQ0=29;MQRankSum=0.094;QD=4.12;ReadPosRankSum=1.465;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:47,58:105:99:463,0,570
chrIX	20962	.	A	G	440.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.7104;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=33;MQRankSum=0.259;QD=4.11;ReadPosRankSum=2.097;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,59:107:99:470,0,508
chrIX	21121	.	G	A	173.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;DP=78;Dels=0.00;FS=64.616;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=38.44;MQ0=2;MQRankSum=-5.839;QD=2.22;ReadPosRankSum=-0.218;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,25:78:99:203,0,1016
chrIX	21133	.	G	A	240.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DP=82;Dels=0.00;FS=56.632;HaplotypeScore=3.4511;MLEAC=1;MLEAF=0.500;MQ=37.70;MQ0=2;MQRankSum=-5.591;QD=2.93;ReadPosRankSum=-0.056;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,28:82:99:270,0,908
chrIX	21139	.	G	A	227.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DP=85;Dels=0.00;FS=49.122;HaplotypeScore=2.6624;MLEAC=1;MLEAF=0.500;MQ=37.47;MQ0=2;MQRankSum=-5.654;QD=2.67;ReadPosRankSum=0.892;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,29:84:99:257,0,1019
chrIX	21142	.	G	A	242.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;DP=90;Dels=0.00;FS=47.974;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=37.13;MQ0=2;MQRankSum=-5.428;QD=2.69;ReadPosRankSum=1.468;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,29:90:99:272,0,1000
chrIX	21145	.	A	G	229.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;DP=96;Dels=0.00;FS=54.783;HaplotypeScore=8.8446;MLEAC=1;MLEAF=0.500;MQ=36.53;MQ0=3;MQRankSum=-5.097;QD=2.39;ReadPosRankSum=1.685;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,32:96:99:259,0,1010
chrIX	21151	.	C	T	163.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.971;DP=96;Dels=0.00;FS=50.664;HaplotypeScore=10.7052;MLEAC=1;MLEAF=0.500;MQ=36.11;MQ0=3;MQRankSum=-5.660;QD=1.70;ReadPosRankSum=1.805;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,32:96:99:193,0,1069
chrIX	21185	.	A	G	109.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;DP=99;Dels=0.00;FS=59.096;HaplotypeScore=5.7055;MLEAC=1;MLEAF=0.500;MQ=29.14;MQ0=10;MQRankSum=-3.606;QD=1.10;ReadPosRankSum=-0.881;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:68,31:99:99:139,0,1141
chrIX	21741	.	A	G	327	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=4;QD=19.24;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:39:360,39,0
chrIX	21742	.	A	G	327	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.36;MQ0=4;QD=19.24;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:39:360,39,0
chrIX	21951	.	T	C	128.13	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.10;MQ0=42;QD=2.42;SB=-8.207e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:18:161,18,0
chrIX	22614	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=1;QD=23.38;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:99:898,99,0
chrIX	22632	.	A	G	605	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=1;QD=20.17;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:69:638,69,0
chrIX	22647	.	A	T	477	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=2;QD=19.08;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:54:510,54,0
chrIX	22769	.	C	G	72.51	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=2;QD=9.06;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:12:105,12,0
chrIX	22790	.	G	T	174.03	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=5;QD=10.24;SB=-3.661e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:24:207,24,0
chrIX	23139	.	C	A	108.26	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=6;QD=5.70;SB=-8.276e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:15:141,15,0
chrIX	23635	.	T	G	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506;DP=42;Dels=0.00;FS=16.128;HaplotypeScore=36.9343;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;MQRankSum=2.333;QD=0.47;ReadPosRankSum=-0.443;SB=-1.318e+02	GT:AD:DP:GQ:PL	1/1:2,40:42:6:51,6,0
chrIX	23638	.	G	A	46.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.129;DP=47;Dels=0.00;FS=13.424;HaplotypeScore=4.2406;MLEAC=2;MLEAF=1.00;MQ=32.57;MQ0=0;MQRankSum=2.341;QD=1.00;ReadPosRankSum=-0.413;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:2,44:47:9:79,9,0
chrIX	23662	.	A	G	58.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;DP=83;Dels=0.00;FS=10.696;HaplotypeScore=14.6298;MLEAC=1;MLEAF=0.500;MQ=42.00;MQ0=0;MQRankSum=-4.893;QD=0.70;ReadPosRankSum=-1.668;SB=-1.150e+02	GT:AD:DP:GQ:PL	0/1:45,35:83:88:88,0,561
chrIX	23677	.	T	G	254.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;DP=112;Dels=0.00;FS=10.687;HaplotypeScore=9.9716;MLEAC=1;MLEAF=0.500;MQ=45.23;MQ0=0;MQRankSum=-3.942;QD=2.27;ReadPosRankSum=-0.325;SB=-1.380e+02	GT:AD:DP:GQ:PL	0/1:62,50:112:99:284,0,924
chrIX	23764	.	G	A	28.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;DP=90;Dels=0.00;FS=10.685;HaplotypeScore=24.4547;MLEAC=1;MLEAF=0.500;MQ=44.55;MQ0=0;MQRankSum=1.074;QD=0.31;ReadPosRankSum=-0.807;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,14:90:58:58,0,1303
chrIX	24157	.	G	T	1142	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.13;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1175,129,0
chrIX	24160	.	A	C	1008	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.500;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.559;QD=16.26;ReadPosRankSum=1.621;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1041,117,0
chrIX	24163	.	G	A	1123	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=17.28;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1156,126,0
chrIX	24340	.	G	A	1270	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.16;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1303,138,0
chrIX	24365	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.099;QD=20.97;ReadPosRankSum=1.633;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1501,165,0
chrIX	24646	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.7619;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.42;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1249,141,0
chrIX	25066	.	A	G	1686	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.07;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1719,192,0
chrIX	25418	.	T	C	740.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;DP=77;Dels=0.00;FS=17.247;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=-0.654;QD=9.61;ReadPosRankSum=0.417;SB=-4.640e+02	GT:AD:DP:GQ:PL	0/1:33,44:77:99:770,0,351
chrIX	25540	.	G	T	76.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.054;DP=16;Dels=0.00;FS=30.584;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.48;MQ0=0;MQRankSum=2.007;QD=4.78;ReadPosRankSum=-2.657;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:10,6:16:12:109,12,0
chrIX	25708	.	G	T	76.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=4.2495;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=0;MQRankSum=2.835;QD=4.75;ReadPosRankSum=-0.058;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:8,8:16:99:106,0,100
chrIX	25720	.	A	T	18.07	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;DP=17;Dels=0.00;FS=28.543;HaplotypeScore=6.9480;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=0;MQRankSum=2.700;QD=1.06;ReadPosRankSum=-2.855;SB=-2.501e+00	GT:AD:DP:GQ:PL	0/1:10,4:17:48:48,0,79
chrIX	25728	.	C	A	61.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;DP=23;Dels=0.00;FS=41.720;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=44.96;MQ0=0;MQRankSum=3.752;QD=2.65;ReadPosRankSum=-4.000;SB=-2.800e+01	GT:AD:DP:GQ:PL	0/1:10,13:23:91:91,0,154
chrIX	25729	.	T	A	122.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;DP=24;Dels=0.00;FS=41.720;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=45.69;MQ0=0;MQRankSum=3.952;QD=5.08;ReadPosRankSum=-4.070;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:10,14:24:99:152,0,151
chrIX	25750	.	G	T	356.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;DP=40;Dels=0.00;FS=22.905;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=50.75;MQ0=0;MQRankSum=4.081;QD=8.90;ReadPosRankSum=-3.174;SB=-2.800e+02	GT:AD:DP:GQ:PL	0/1:9,31:40:96:386,0,96
chrIX	25765	.	A	G	25.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;DP=56;Dels=0.00;FS=21.043;HaplotypeScore=8.8700;MLEAC=1;MLEAF=0.500;MQ=52.63;MQ0=0;MQRankSum=-4.489;QD=0.45;ReadPosRankSum=-0.888;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,9:56:55:55,0,733
chrIX	26226	.	A	G	1250	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.84;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1283,144,0
chrIX	26294	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.24;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1350,150,0
chrIX	26381	.	T	C	963	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.93;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:996,111,0
chrIX	26499	.	T	A	899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;MQRankSum=0.538;QD=15.50;ReadPosRankSum=1.673;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:932,99,0
chrIX	26507	.	G	A	865	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.78;MQ0=0;QD=13.73;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:898,99,0
chrIX	26556	.	C	G	301	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=5.90;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:36:334,36,0
chrIX	26564	.	A	G	389	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.91;MQ0=0;QD=6.59;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:48:422,48,0
chrIX	26575	.	A	G	541	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=9.33;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:63:574,63,0
chrIX	26591	.	T	A	543	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;QD=9.70;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:63:576,63,0
chrIX	26620	.	T	C	610	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=14.19;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:643,72,0
chrIX	26667	.	T	C	481	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=15.52;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:63:514,63,0
chrIX	26668	.	C	T	482	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.74;MQ0=0;QD=15.55;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:63:515,63,0
chrIX	26686	.	A	G	463	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=14.94;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:60:496,60,0
chrIX	26716	.	G	A	359	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;QD=12.82;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:48:392,48,0
chrIX	26728	.	C	T	301	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=0;QD=10.75;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:42:334,42,0
chrIX	26761	.	T	C	306	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=13.30;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:42:339,42,0
chrIX	26783	.	G	C	241	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=12.05;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:33:274,33,0
chrIX	26788	.	A	G	216	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=12.71;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:30:249,30,0
chrIX	26801	.	T	C	372	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=16.17;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:48:405,48,0
chrIX	26833	.	A	G	458	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=16.96;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:54:491,54,0
chrIX	26856	.	A	G	546	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=15.60;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:63:579,63,0
chrIX	26915	.	C	T	571	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.18;MQ0=0;QD=10.98;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:72:604,72,0
chrIX	26982	.	C	T	778	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=18.52;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:811,90,0
chrIX	27023	.	A	G	475	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.19;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:60:508,60,0
chrIX	27038	.	C	T	360	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;QD=9.47;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:45:393,45,0
chrIX	27046	.	A	G	285	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=8.64;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:36:318,36,0
chrIX	27054	.	A	G	220	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.76;MQ0=0;QD=7.10;SB=-2.050e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:30:253,30,0
chrIX	27068	.	G	A	227	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=7.09;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:30:260,30,0
chrIX	27090	.	A	G	202.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=4.914;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=0;MQRankSum=-0.839;QD=6.52;ReadPosRankSum=1.621;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:27:235,27,0
chrIX	27099	.	C	T	161.06	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=6.71;SB=-1.671e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:21:194,21,0
chrIX	27108	.	A	G	100.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.01;SB=-1.633e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:15:133,15,0
chrIX	27114	.	A	C	35.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.05;MQ0=0;QD=2.12;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:9:68,9,0
chrIX	27118	.	C	T	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.38;MQ0=0;QD=2.52;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:9:80,9,0
chrIX	27129	.	A	G	69.51	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.86;MQ0=0;QD=3.66;SB=-1.715e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:12:102,12,0
chrIX	27132	.	C	G	70.51	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=3.92;SB=-1.705e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:12:103,12,0
chrIX	27219	.	A	G	210.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=28;Dels=0.00;FS=4.806;HaplotypeScore=1.5678;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-2.186;QD=7.50;ReadPosRankSum=1.650;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:2,26:28:27:243,27,0
chrIX	27224	.	G	T	216.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.9651;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;MQRankSum=-1.375;QD=7.45;ReadPosRankSum=1.255;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:1,28:29:27:249,27,0
chrIX	27227	.	A	G	132.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.9651;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=5.08;SB=-1.091e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:18:165,18,0
chrIX	27230	.	A	G	163.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=5.82;SB=-1.381e+02	GT:AD:DP:GQ:PL	1/1:0,25:28:21:196,21,0
chrIX	27241	.	G	A	303	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=8.91;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:36:336,36,0
chrIX	27688	.	T	A	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=5.209;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=-0.166;QD=18.26;ReadPosRankSum=1.542;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1384,156,0
chrIX	27707	.	G	T	1462	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=18.51;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1495,162,0
chrIX	27987	.	C	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.66;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1419,156,0
chrIX	28989	.	G	C	2780	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.17;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2813,309,0
chrIX	29044	.	T	C	2309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;MQRankSum=0.513;QD=21.18;ReadPosRankSum=1.700;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2342,258,0
chrIX	29074	.	T	G	2131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.1649;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.919;QD=18.53;ReadPosRankSum=1.702;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2164,240,0
chrIX	29079	.	G	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.1718;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.43;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2090,228,0
chrIX	29094	.	A	T	1759	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.468;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-1.628;QD=17.59;ReadPosRankSum=1.697;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1792,201,0
chrIX	29124	.	G	T	1866	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.24;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1899,201,0
chrIX	29193	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.95;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1961,213,0
chrIX	29414	.	G	T	1687	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.96;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1720,198,0
chrIX	29472	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.89;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1536,168,0
chrIX	29543	.	C	G	2041	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.44;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,96:105:99:2074,231,0
chrIX	29565	.	G	A	1779	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.99;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1812,204,0
chrIX	29619	.	T	G	892	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.49;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:925,102,0
chrIX	29628	.	G	C	959	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.98;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:992,108,0
chrIX	29725	.	T	C	1656	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=81;Dels=0.00;FS=5.847;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=0.888;QD=20.44;ReadPosRankSum=2.913;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:3,78:81:99:1689,186,0
chrIX	29750	.	C	G	1722	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.52;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1755,189,0
chrIX	29781	.	G	A	1778	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.09;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1811,192,0
chrIX	29856	.	C	T	1743	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7200;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.93;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1776,195,0
chrIX	29928	.	T	G	1937	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.05;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1970,216,0
chrIX	30093	.	G	A	2153	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.20;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,94:97:99:2186,237,0
chrIX	30251	.	G	A	2502	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.95;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2535,273,0
chrIX	30282	.	C	G	2593	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.16;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,115:117:99:2626,285,0
chrIX	30416	.	A	G	2783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=4.014;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-1.375;QD=21.91;ReadPosRankSum=1.705;SB=-1.315e+03	GT:AD:DP:GQ:PL	1/1:1,125:127:99:2816,321,0
chrIX	30537	.	G	A	2138	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=22.74;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2171,234,0
chrIX	30598	.	G	A	2745	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=21.28;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2778,297,0
chrIX	30599	.	G	A	2630	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.24;MQ0=0;QD=20.87;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2663,291,0
chrIX	30609	.	A	C	2361	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=19.35;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2394,273,0
chrIX	30672	.	C	G	592	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=7.49;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:72:625,72,0
chrIX	30688	.	A	C	855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=4.033;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;MQRankSum=0.962;QD=10.43;ReadPosRankSum=1.689;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:96:888,96,0
chrIX	30792	.	A	G	631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.118;DP=82;Dels=0.00;FS=17.289;HaplotypeScore=4.9679;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-2.687;QD=7.70;ReadPosRankSum=3.982;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:15,67:82:56:664,56,0
chrIX	30845	.	C	T	850	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=11.33;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:93:883,93,0
chrIX	31082	.	A	T	2513	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.06;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2546,279,0
chrIX	31217	.	G	A	3367.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.88;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:3367,375,0
chrIX	31904	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.44;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1791,192,0
chrIX	31948	.	G	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.22;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1570,171,0
chrIX	32693	.	G	C	1638	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.09;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1671,186,0
chrIX	32809	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.32;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1882,207,0
chrIX	32963	.	C	G	2236	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.28;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,112:116:99:2269,252,0
chrIX	33143	.	A	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=17.98;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1202,132,0
chrIX	33147	.	T	C	1055	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=16.23;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1088,120,0
chrIX	33455	.	T	C	1350	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;MQRankSum=-0.444;QD=17.31;ReadPosRankSum=1.688;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1383,159,0
chrIX	33460	.	C	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=17.79;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1492,159,0
chrIX	33484	.	A	G	865	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=12.18;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:898,102,0
chrIX	33485	.	T	C	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;MQRankSum=-0.120;QD=11.68;ReadPosRankSum=2.381;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:874,99,0
chrIX	33510	.	A	G	785	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=9.69;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:90:818,90,0
chrIX	33515	.	C	A	770	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=8.75;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:90:803,90,0
chrIX	33529	.	T	G	765	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=9.11;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:90:798,90,0
chrIX	33531	.	A	G	799	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=9.51;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:90:832,90,0
chrIX	33548	.	T	G	692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;MQRankSum=-2.385;QD=9.11;ReadPosRankSum=2.385;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:84:725,84,0
chrIX	33549	.	G	T	726	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=9.43;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:84:759,84,0
chrIX	33562	.	G	T	1207	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=41.45;MQ0=0;QD=12.07;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1240,138,0
chrIX	33599	.	A	C	2253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=5.631;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=0.920;QD=17.20;ReadPosRankSum=1.678;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,127:131:99:2286,255,0
chrIX	33620	.	C	T	3215.99	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.73;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3249,348,0
chrIX	33702	.	T	C	2744	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.66;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2777,306,0
chrIX	33811	.	G	A	1757	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.0294;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=19.52;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1790,195,0
chrIX	33820	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=79;Dels=0.00;FS=5.834;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=-0.475;QD=19.57;ReadPosRankSum=2.886;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1579,177,0
chrIX	33870	.	G	T	1862	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0205;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=19.20;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1895,204,0
chrIX	34009	.	T	C	2489	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=4.271;HaplotypeScore=7.4052;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.338;QD=20.24;ReadPosRankSum=1.676;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2522,282,0
chrIX	34060	.	G	A	2139	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.81;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2172,237,0
chrIX	34088	.	T	C	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=97;Dels=0.00;FS=9.307;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.781;QD=18.95;ReadPosRankSum=2.844;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:3,94:97:99:1871,210,0
chrIX	34351	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.488;QD=16.83;ReadPosRankSum=1.691;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1480,168,0
chrIX	34730	.	T	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.91;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1567,165,0
chrIX	35111	.	C	T	1835	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.17;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1868,207,0
chrIX	35118	.	C	G	1949	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.69;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1982,216,0
chrIX	35226	.	C	T	1496	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.00;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1529,165,0
chrIX	35244	.	A	G	1323	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.90;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1356,147,0
chrIX	35247	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.24;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1310,150,0
chrIX	35479	.	C	G	2185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=9.6130;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.997;QD=22.07;ReadPosRankSum=0.437;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2218,243,0
chrIX	35770	.	T	C	1501	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.85;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1534,171,0
chrIX	35910	.	T	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.99;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1432,156,0
chrIX	36310	.	C	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.80;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1302,138,0
chrIX	36317	.	A	G	1170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3494;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-1.353;QD=18.28;ReadPosRankSum=1.678;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1203,132,0
chrIX	36580	.	A	C	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=3.347;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.078;QD=19.27;ReadPosRankSum=0.595;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1324,150,0
chrIX	36609	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.91;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1130,120,0
chrIX	36648	.	G	A	919	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=18.02;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:952,105,0
chrIX	36904	.	C	A	945	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.53;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:978,108,0
chrIX	37634	.	A	C	2065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=120;Dels=0.00;FS=2.597;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.286;QD=17.21;ReadPosRankSum=2.908;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:3,117:120:99:2098,237,0
chrIX	37646	.	C	G	1747	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.18;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,102:108:99:1780,201,0
chrIX	37771	.	G	A	1929	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4353;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.67;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1962,213,0
chrIX	37822	.	T	C	2233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.002;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.520;QD=22.79;ReadPosRankSum=1.626;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2266,246,0
chrIX	38023	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.46;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1557,171,0
chrIX	38050	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.55;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1480,162,0
chrIX	38101	.	T	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.95;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1200,132,0
chrIX	38128	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=17.87;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:962,105,0
chrIX	38899	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=5.156;HaplotypeScore=5.4883;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.263;QD=17.27;ReadPosRankSum=1.674;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1052,117,0
chrIX	39195	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.74;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1207,129,0
chrIX	39277	.	T	A	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.442;QD=23.61;ReadPosRankSum=1.664;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1237,138,0
chrIX	39737	.	T	C	2272	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.711;QD=23.92;ReadPosRankSum=1.696;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2305,255,0
chrIX	40145	.	G	A	5313.01	PASS	AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=14.6485;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.32;SB=-2.707e+03	GT:AD:DP:GQ:PL	1/1:0,237:238:99:5313,576,0
chrIX	40190	.	A	G	3383.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=149;Dels=0.00;FS=4.041;HaplotypeScore=13.8749;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.854;QD=22.70;ReadPosRankSum=1.659;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:1,141:149:99:3383,375,0
chrIX	40512	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.64;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1683,183,0
chrIX	40554	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.089;QD=21.08;ReadPosRankSum=1.688;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1677,186,0
chrIX	40605	.	C	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.79;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1085,123,0
chrIX	40860	.	A	G	1947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1920;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.185;QD=20.49;ReadPosRankSum=-0.091;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1980,222,0
chrIX	41415	.	A	G	1310	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.83;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1343,150,0
chrIX	41439	.	A	G	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=59;Dels=0.00;FS=2.899;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.703;QD=19.95;ReadPosRankSum=2.322;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:2,56:59:99:1210,132,0
chrIX	41532	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=86;Dels=0.00;FS=3.053;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.044;QD=19.30;ReadPosRankSum=2.391;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:2,82:86:99:1693,192,0
chrIX	41898	.	T	C	978	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=17.16;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1011,111,0
chrIX	41905	.	A	G	871	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.75;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:904,102,0
chrIX	42275	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=60;Dels=0.00;FS=5.873;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.254;QD=21.95;ReadPosRankSum=1.613;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:1,57:60:99:1350,150,0
chrIX	42365	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.32;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1059,117,0
chrIX	42679	.	T	C	1524	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.46;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1557,171,0
chrIX	43318	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.51;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1680,186,0
chrIX	43324	.	C	G	1587	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.12;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1620,180,0
chrIX	43393	.	A	G	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=0.481;QD=20.90;ReadPosRankSum=1.636;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1538,171,0
chrIX	43493	.	T	C	1420	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.19;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1453,156,0
chrIX	43748	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.62;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1435,156,0
chrIX	43753	.	C	A	1369	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.43;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1402,150,0
chrIX	44293	.	G	A	747	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:87:780,87,0
chrIX	45203	.	A	G	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.806;QD=20.83;ReadPosRankSum=1.652;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1824,204,0
chrIX	45244	.	C	T	1346	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.37;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1379,153,0
chrIX	45367	.	G	A	1503	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.1215;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.11;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1536,165,0
chrIX	45547	.	T	C	1957	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.74;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1990,225,0
chrIX	45559	.	A	C	2027	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=20.27;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2060,228,0
chrIX	45607	.	A	G	2258	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.81;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2291,252,0
chrIX	45691	.	T	G	1851	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.28;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1884,210,0
chrIX	45705	.	G	A	1925	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.4513;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.39;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1958,210,0
chrIX	45746	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.211;QD=21.68;ReadPosRankSum=1.690;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1811,198,0
chrIX	45805	.	T	C	2436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=3.732;HaplotypeScore=10.4768;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.203;QD=21.95;ReadPosRankSum=1.701;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2469,270,0
chrIX	45859	.	C	T	2084	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.23;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2117,231,0
chrIX	45886	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=100;Dels=0.00;FS=2.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.704;QD=19.43;ReadPosRankSum=2.400;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:2,97:100:99:1976,219,0
chrIX	45981	.	G	A	2717	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=25.39;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2750,294,0
chrIX	45992	.	A	G	2130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.071;QD=21.73;ReadPosRankSum=1.697;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2163,237,0
chrIX	46057	.	C	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.93;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1247,144,0
chrIX	46102	.	C	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.69;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1378,147,0
chrIX	46189	.	T	C	2433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=106;Dels=0.00;FS=2.952;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.731;QD=22.95;ReadPosRankSum=2.403;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2466,273,0
chrIX	46556	.	C	T	2469	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.40;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2502,270,0
chrIX	46584	.	A	G	2254	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.31;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,108:111:99:2287,252,0
chrIX	46970	.	T	C	1810	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.35;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1843,204,0
chrIX	47054	.	G	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.49;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1172,129,0
chrIX	47108	.	A	G	1314	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=17.06;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1347,153,0
chrIX	47114	.	A	G	1352	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=16.29;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1385,150,0
chrIX	47117	.	C	T	1465	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=16.65;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1498,159,0
chrIX	47222	.	A	G	1714	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1747,195,0
chrIX	47916	.	T	C	1991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=5.718;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-1.018;QD=20.53;ReadPosRankSum=1.696;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2024,225,0
chrIX	47922	.	C	T	2088	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.09;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2121,231,0
chrIX	48597	.	A	C	1926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.782;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.242;QD=21.89;ReadPosRankSum=1.692;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,85:88:99:1959,216,0
chrIX	48780	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=4.309;HaplotypeScore=8.9978;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.409;QD=16.24;ReadPosRankSum=1.654;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1495,165,0
chrIX	48813	.	A	G	1909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=100;Dels=0.00;FS=2.954;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.435;QD=19.09;ReadPosRankSum=2.350;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:2,97:100:99:1942,216,0
chrIX	48876	.	A	C	2023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=125;Dels=0.00;FS=3.424;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=0.014;QD=16.18;ReadPosRankSum=1.703;SB=-1.420e+03	GT:AD:DP:GQ:PL	1/1:1,121:125:99:2056,231,0
chrIX	48879	.	C	T	2046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=119;Dels=0.00;FS=3.476;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.527;QD=17.19;ReadPosRankSum=-1.292;SB=-1.420e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2079,225,0
chrIX	49422	.	T	C	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=47;Dels=0.00;FS=3.499;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.553;QD=20.79;ReadPosRankSum=1.511;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:95:1010,95,0
chrIX	49521	.	G	A	454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=93;Dels=0.00;FS=4.122;HaplotypeScore=74.2041;MLEAC=2;MLEAF=1.00;MQ=36.81;MQ0=0;MQRankSum=1.285;QD=4.88;ReadPosRankSum=-0.056;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:57:487,57,0
chrIX	49550	.	T	C	751	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5922;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=9.39;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:87:784,87,0
chrIX	49641	.	T	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.68;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1568,177,0
chrIX	49836	.	A	G	1851	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1788;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.78;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1884,207,0
chrIX	50097	.	C	T	1840	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.00;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1873,204,0
chrIX	52725	.	G	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.0975;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.90;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,83:87:99:1677,180,0
chrIX	52905	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.17;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1134,123,0
chrIX	53010	.	C	G	981	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.82;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1014,114,0
chrIX	53091	.	G	C	1049	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.65;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1082,123,0
chrIX	53103	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.68;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1247,138,0
chrIX	53238	.	T	C	808	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.71;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:841,96,0
chrIX	53484	.	G	C	702	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.97;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:735,81,0
chrIX	53815	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.53;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1002,105,0
chrIX	53832	.	G	A	1069	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.82;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1102,120,0
chrIX	53860	.	T	C	985	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=15.39;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1018,114,0
chrIX	53965	.	G	C	2017	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7622;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.73;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2050,225,0
chrIX	54404	.	G	C	1010	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.41;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1043,117,0
chrIX	54480	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=4.867;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.281;QD=15.53;ReadPosRankSum=1.657;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:84:763,84,0
chrIX	54551	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.1623;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.410;QD=18.99;ReadPosRankSum=1.550;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1495,162,0
chrIX	54965	.	G	A	714	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=12.75;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:1,53:56:84:747,84,0
chrIX	55071	.	C	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.32;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1656,180,0
chrIX	55251	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.32;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1729,186,0
chrIX	55428	.	G	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7952;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.55;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1443,156,0
chrIX	55461	.	A	T	1674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=3.757;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.711;QD=17.62;ReadPosRankSum=-1.513;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1707,169,0
chrIX	55663	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=13.35;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1168,126,0
chrIX	55666	.	G	A	1117	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=12.99;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1150,126,0
chrIX	55678	.	A	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=12.62;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1144,126,0
chrIX	55716	.	T	C	1231	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.4580;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=13.24;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1264,147,0
chrIX	55756	.	C	T	2004	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.84;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,98:101:99:2037,219,0
chrIX	55837	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=15.41;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:865,96,0
chrIX	56028	.	T	A	2005	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.79;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2038,231,0
chrIX	57000	.	C	T	1887	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=19.66;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1920,204,0
chrIX	57006	.	G	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=20.00;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1893,204,0
chrIX	57063	.	C	T	1873	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.73;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1906,207,0
chrIX	57096	.	C	T	2325	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.53;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2358,255,0
chrIX	57153	.	C	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1678,186,0
chrIX	57683	.	A	G	2245	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.7861;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.41;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2278,261,0
chrIX	57890	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.38;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1398,153,0
chrIX	58130	.	C	T	1241	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=17.73;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1274,138,0
chrIX	58256	.	C	G	2212	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.48;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2245,255,0
chrIX	58382	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.24;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1265,141,0
chrIX	58436	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=7.928;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.520;QD=21.69;ReadPosRankSum=2.379;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:2,67:70:99:1551,174,0
chrIX	58508	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.099;QD=18.53;ReadPosRankSum=1.633;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1330,147,0
chrIX	58511	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.82;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1334,147,0
chrIX	59333	.	T	C	2362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=3.174;HaplotypeScore=5.7707;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.572;QD=21.87;ReadPosRankSum=1.668;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2395,261,0
chrIX	59546	.	T	C	1719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.567;QD=20.22;ReadPosRankSum=1.650;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1752,195,0
chrIX	59552	.	T	G	1617	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.56;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1650,186,0
chrIX	59639	.	T	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0944;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.36;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1977,210,0
chrIX	59981	.	T	C	883	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.02;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:916,102,0
chrIX	60280	.	T	C	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.974;QD=19.06;ReadPosRankSum=1.678;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1272,138,0
chrIX	60844	.	T	C	1348	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.22;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1381,159,0
chrIX	60879	.	A	C	1407	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.04;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1440,156,0
chrIX	61274	.	G	A	684	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.06;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:78:717,78,0
chrIX	61323	.	C	T	542	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.07;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:63:575,63,0
chrIX	61466	.	C	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.12;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1467,159,0
chrIX	62057	.	A	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.12;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1161,129,0
chrIX	62438	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.40;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:910,99,0
chrIX	62504	.	C	G	600	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.35;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:633,69,0
chrIX	62514	.	A	G	604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.542;QD=18.87;ReadPosRankSum=1.516;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:72:637,72,0
chrIX	62815	.	A	G	817	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.76;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,43:46:93:850,93,0
chrIX	63495	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.72;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1901,204,0
chrIX	63655	.	A	G	2185	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.07;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2218,243,0
chrIX	63838	.	T	C	1843	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.18;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1876,210,0
chrIX	64057	.	C	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.57;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1408,153,0
chrIX	64231	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.04;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1232,135,0
chrIX	64310	.	G	A	1150	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1183,126,0
chrIX	64645	.	G	A	1570	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.93;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1603,171,0
chrIX	64705	.	A	G	1902	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.381;DP=100;Dels=0.00;FS=3.188;HaplotypeScore=7.7313;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.312;QD=19.02;ReadPosRankSum=-0.520;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1935,191,0
chrIX	64944	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7235;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.54;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,70:74:99:1627,177,0
chrIX	65121	.	T	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.45;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1362,144,0
chrIX	65290	.	C	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.9714;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.49;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1592,168,0
chrIX	65341	.	T	C	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.00;FS=3.050;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-1.098;QD=18.38;ReadPosRankSum=2.382;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1393,156,0
chrIX	65359	.	T	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=15.53;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1089,120,0
chrIX	65368	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=16.24;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1170,132,0
chrIX	65406	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=17.51;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1399,153,0
chrIX	65518	.	C	A	2005	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.03;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2038,219,0
chrIX	65522	.	T	C	1995	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.93;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2028,225,0
chrIX	65551	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.40;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2045,222,0
chrIX	65642	.	T	C	1162	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.13;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1195,132,0
chrIX	65711	.	T	C	1600	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.33;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1633,180,0
chrIX	65758	.	G	A	1885	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=19.43;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1918,207,0
chrIX	66115	.	T	A	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=0.949;QD=14.16;ReadPosRankSum=-0.454;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1237,138,0
chrIX	66117	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=16.27;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1400,165,0
chrIX	66681	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.94;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1218,132,0
chrIX	66906	.	G	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=20.54;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1553,168,0
chrIX	66928	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=18.67;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1265,135,0
chrIX	66931	.	A	G	1261	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=18.54;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1294,141,0
chrIX	66948	.	A	G	1250	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=17.36;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1283,141,0
chrIX	67219	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.70;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1682,186,0
chrIX	67222	.	C	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.99;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1649,180,0
chrIX	67321	.	T	C	1526	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.49;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1559,171,0
chrIX	67390	.	G	A	793	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.86;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:90:826,90,0
chrIX	67392	.	T	C	782	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=16.29;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:815,90,0
chrIX	67395	.	A	T	816	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=15.69;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:849,90,0
chrIX	67456	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-1.243;QD=14.66;ReadPosRankSum=0.102;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1294,124,0
chrIX	67458	.	T	C	1312	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=8.340;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-1.106;QD=14.91;ReadPosRankSum=2.394;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1345,147,0
chrIX	67689	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=1.670;QD=23.05;ReadPosRankSum=1.176;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1324,147,0
chrIX	67951	.	C	T	1495	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8279;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.42;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1528,165,0
chrIX	67994	.	C	T	1973	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.17;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2006,213,0
chrIX	68072	.	G	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.14;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1140,123,0
chrIX	68100	.	C	T	841	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.89;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:874,93,0
chrIX	68113	.	T	C	823	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.80;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:856,96,0
chrIX	68123	.	C	A	824	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=16.48;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:857,93,0
chrIX	68175	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=18.73;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1494,162,0
chrIX	68186	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=16.98;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1646,177,0
chrIX	68243	.	C	T	2056	SnpCluster	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=16.19;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2089,237,0
chrIX	68244	.	T	C	2115	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;MQRankSum=-1.239;QD=16.27;ReadPosRankSum=2.393;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:2,128:130:99:2148,243,0
chrIX	68247	.	T	C	2259	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.623;DP=139;Dels=0.00;FS=4.930;HaplotypeScore=5.0673;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=-1.834;QD=16.25;ReadPosRankSum=3.783;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:5,133:139:99:2292,252,0
chrIX	68317	.	C	T	2620	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.20;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2653,291,0
chrIX	68384	.	A	T	48.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=81;Dels=0.00;FS=9.112;HaplotypeScore=69.0154;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;MQRankSum=-0.609;QD=0.60;ReadPosRankSum=2.325;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:9:81,9,0
chrIX	68461	.	A	G	1495	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=13.2172;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.76;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1528,171,0
chrIX	68518	.	A	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=18.15;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1394,159,0
chrIX	68548	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=-0.982;QD=15.61;ReadPosRankSum=1.625;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1547,171,0
chrIX	68567	.	C	T	1903	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=16.26;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1936,210,0
chrIX	68604	.	C	T	2017	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=23.5179;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=17.24;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2050,219,0
chrIX	68739	.	C	T	1264	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.0638;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=15.60;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1297,147,0
chrIX	68780	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=17.61;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1389,153,0
chrIX	68787	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=18.08;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1371,147,0
chrIX	68814	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=16.79;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1376,150,0
chrIX	68857	.	A	G	1248	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=17.58;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1281,138,0
chrIX	68873	.	C	G	1292	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=20.19;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1325,147,0
chrIX	68898	.	C	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=19.68;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1253,141,0
chrIX	68935	.	G	A	1076	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=20.69;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1109,117,0
chrIX	69033	.	C	T	1035	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=53.6955;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=17.54;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1068,117,0
chrIX	69064	.	T	C	1048	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=14.97;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1081,120,0
chrIX	69071	.	A	G	1171	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-1.641;QD=15.41;ReadPosRankSum=1.687;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1204,135,0
chrIX	69138	.	T	C	2086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=15.9093;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=1.516;QD=21.29;ReadPosRankSum=1.696;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,95:98:99:2119,234,0
chrIX	69429	.	C	T	2478	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=24.06;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2511,267,0
chrIX	69624	.	C	A	3641.01	PASS	AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.90;SB=-2.000e+03	GT:AD:DP:GQ:PL	1/1:0,183:183:99:3641,393,0
chrIX	69651	.	A	G	2256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.761;DP=165;Dels=0.00;FS=28.324;HaplotypeScore=2.6653;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-2.659;QD=13.67;ReadPosRankSum=4.707;SB=-1.750e+03	GT:AD:DP:GQ:PL	1/1:8,157:165:99:2289,255,0
chrIX	69658	.	T	C	2189	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=13.94;SB=-1.651e+03	GT:AD:DP:GQ:PL	1/1:0,157:157:99:2222,246,0
chrIX	69704	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.79;MQ0=0;QD=11.02;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,128:130:99:1466,162,0
chrIX	69730	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=15.86;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1556,168,0
chrIX	69770	.	T	G	1237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;MQRankSum=-0.241;QD=15.46;ReadPosRankSum=1.425;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1270,144,0
chrIX	69789	.	G	A	1492	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.65;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1525,168,0
chrIX	69815	.	A	G	1976	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.96;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2009,222,0
chrIX	69835	.	T	C	2360	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.65;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2393,264,0
chrIX	69890	.	T	G	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=99;Dels=0.00;FS=8.445;HaplotypeScore=12.0783;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.485;QD=20.64;ReadPosRankSum=2.399;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:2,95:99:99:2076,228,0
chrIX	69950	.	A	G	1806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=0.551;QD=20.52;ReadPosRankSum=1.653;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1839,204,0
chrIX	69958	.	T	C	1623	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.23;MQ0=0;QD=20.04;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1656,183,0
chrIX	70038	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;QD=16.75;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1490,162,0
chrIX	70073	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=18.72;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1362,153,0
chrIX	70145	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=17.62;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1284,141,0
chrIX	70241	.	T	C	1675	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.64;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1708,192,0
chrIX	70296	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.08;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1424,159,0
chrIX	70443	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.30;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1332,141,0
chrIX	70461	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2241;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.04;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1456,159,0
chrIX	70505	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.44;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1250,138,0
chrIX	70537	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=16.38;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1409,156,0
chrIX	70556	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.779;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.609;QD=16.28;ReadPosRankSum=1.639;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1254,138,0
chrIX	70598	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=93;Dels=0.00;FS=6.163;HaplotypeScore=13.8912;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=2.877;QD=16.58;ReadPosRankSum=2.855;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:3,89:93:99:1575,174,0
chrIX	70904	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.17;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1748,189,0
chrIX	70962	.	G	A	1639	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.23;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1672,180,0
chrIX	71094	.	A	G	2168	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.89;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2201,243,0
chrIX	71177	.	G	A	1754	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3264;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.64;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1787,195,0
chrIX	71189	.	A	G	1592	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=91;Dels=0.00;FS=6.267;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=0.123;QD=17.49;ReadPosRankSum=2.395;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:2,88:91:99:1625,180,0
chrIX	71236	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=16.07;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1174,126,0
chrIX	71237	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;QD=15.75;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1151,126,0
chrIX	71252	.	C	A	996	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4328;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=13.46;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1029,114,0
chrIX	71366	.	T	A	1776	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.20;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1809,195,0
chrIX	71501	.	C	T	1852	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.64;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:1885,204,0
chrIX	71504	.	T	C	1848	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.94;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1881,207,0
chrIX	71693	.	A	G	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.876;QD=21.40;ReadPosRankSum=1.615;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1938,216,0
chrIX	71768	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.36;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1263,138,0
chrIX	71795	.	G	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.54;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1090,120,0
chrIX	71830	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.71;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1683,180,0
chrIX	72015	.	C	G	1680	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.27;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1713,195,0
chrIX	72065	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=14.16;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1166,132,0
chrIX	72072	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.73;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1388,153,0
chrIX	72176	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.84;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1449,156,0
chrIX	72311	.	G	A	1710	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.85;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1743,186,0
chrIX	72464	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.52;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1408,156,0
chrIX	72564	.	C	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=18.01;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1600,174,0
chrIX	72570	.	G	T	1341	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=14.42;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1374,153,0
chrIX	72581	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=16.81;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1613,180,0
chrIX	72621	.	C	T	1590	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.49;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1623,174,0
chrIX	72672	.	G	A	1198	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.64;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1231,135,0
chrIX	72684	.	T	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=19.90;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1247,138,0
chrIX	72697	.	C	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=19.48;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1260,138,0
chrIX	72757	.	T	A	771	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=15.73;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:804,87,0
chrIX	72762	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=14.31;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:763,87,0
chrIX	72784	.	T	C	909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=2.859;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=-0.777;QD=14.66;ReadPosRankSum=2.371;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:942,108,0
chrIX	72998	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.8057;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.041;QD=16.00;ReadPosRankSum=2.905;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:3,71:76:99:1249,141,0
chrIX	73076	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=0.797;QD=21.49;ReadPosRankSum=1.677;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1387,153,0
chrIX	73100	.	G	A	1446	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.37;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1479,159,0
chrIX	73117	.	T	C	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.400;QD=19.34;ReadPosRankSum=1.679;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1290,141,0
chrIX	73178	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=17.85;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1443,162,0
chrIX	73727	.	C	T	1722	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.27;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1755,192,0
chrIX	74340	.	A	G	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=3.026;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.020;QD=21.80;ReadPosRankSum=2.372;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1428,159,0
chrIX	74541	.	G	A	1184	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.4068;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.14;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1217,132,0
chrIX	74562	.	T	C	818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=3.388;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-0.433;QD=17.04;ReadPosRankSum=1.660;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:93:851,93,0
chrIX	74610	.	C	T	664	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=16.20;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:697,75,0
chrIX	74808	.	T	C	1732	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.12;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1765,195,0
chrIX	75045	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.78;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1035,114,0
chrIX	75152	.	G	A	1911	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7385;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.82;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1944,207,0
chrIX	75594	.	C	T	1776	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.48;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1809,198,0
chrIX	75717	.	T	C	2041	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.21;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2074,231,0
chrIX	75847	.	T	C	928	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.54;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:961,105,0
chrIX	76178	.	T	C	1328	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1361,153,0
chrIX	76340	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=93;Dels=0.00;FS=6.356;HaplotypeScore=6.6633;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.569;QD=19.26;ReadPosRankSum=1.496;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:2,91:93:99:1824,198,0
chrIX	76381	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=16.36;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1456,165,0
chrIX	76783	.	A	G	1349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.979;QD=19.55;ReadPosRankSum=1.682;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1382,153,0
chrIX	76900	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.54;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1594,171,0
chrIX	77020	.	C	T	2162	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7799;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.76;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2195,240,0
chrIX	77331	.	G	A	3370.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.40;SB=-1.849e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3370,363,0
chrIX	77427	.	A	T	1845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.8313;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.254;QD=20.50;ReadPosRankSum=1.653;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1878,204,0
chrIX	77546	.	T	C	2171	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.15;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2204,246,0
chrIX	77594	.	T	G	2958	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,127:129:99:2991,330,0
chrIX	77995	.	A	G	2170	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.84;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2203,240,0
chrIX	78274	.	A	G	2157	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.15;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2190,243,0
chrIX	78328	.	T	C	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.716;HaplotypeScore=6.1492;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.083;QD=20.27;ReadPosRankSum=1.559;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1655,183,0
chrIX	78466	.	G	A	2595	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.10;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2628,279,0
chrIX	78511	.	T	C	2836	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=135;Dels=0.01;FS=6.120;HaplotypeScore=13.9806;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.629;QD=21.01;ReadPosRankSum=2.887;SB=-1.730e+03	GT:AD:DP:GQ:PL	1/1:3,130:134:99:2869,312,0
chrIX	78592	.	C	T	2757	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2790,297,0
chrIX	78673	.	G	A	1737	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.27;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1770,189,0
chrIX	78739	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1665,183,0
chrIX	79042	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.38;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1378,156,0
chrIX	79255	.	C	G	1515	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.31;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1548,171,0
chrIX	79502	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.97;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1681,192,0
chrIX	79550	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.31;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1292,141,0
chrIX	79625	.	A	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.35;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1687,189,0
chrIX	79786	.	G	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.50;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1320,147,0
chrIX	79822	.	G	A	1146	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.84;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1179,126,0
chrIX	79996	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1377,153,0
chrIX	80086	.	A	G	1866	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.56;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1899,207,0
chrIX	80414	.	A	G	982	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1015,111,0
chrIX	80696	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.79;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1188,135,0
chrIX	81401	.	T	C	1592	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.41;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1625,180,0
chrIX	81995	.	G	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1459,159,0
chrIX	82030	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.25;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1568,174,0
chrIX	82157	.	T	C	1188	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.48;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1221,135,0
chrIX	82202	.	G	A	1150	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.97;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1183,129,0
chrIX	82232	.	C	T	1090	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.17;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1123,117,0
chrIX	82237	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.65;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1180,126,0
chrIX	82457	.	T	C	1396	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.86;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1429,159,0
chrIX	82899	.	G	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=15.05;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1147,126,0
chrIX	82976	.	G	A	927	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:960,105,0
chrIX	83017	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.25;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1329,144,0
chrIX	83067	.	T	C	1810	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.3237;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=18.66;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1843,204,0
chrIX	83104	.	A	C	2101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-1.643;QD=17.81;ReadPosRankSum=1.702;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:1,115:118:99:2134,234,0
chrIX	83114	.	T	C	2151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=118;Dels=0.00;FS=10.319;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=-0.513;QD=18.23;ReadPosRankSum=2.941;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:3,115:118:99:2184,237,0
chrIX	83152	.	G	A	2014	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.82;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2047,219,0
chrIX	83376	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.54;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1634,183,0
chrIX	83487	.	G	A	2474	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.79;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2507,273,0
chrIX	83517	.	C	G	2086	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.96;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2119,237,0
chrIX	83571	.	T	C	948	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.23;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:981,111,0
chrIX	83754	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=15.61;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1188,129,0
chrIX	85007	.	C	T	990	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=20.62;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1023,117,0
chrIX	86076	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.68;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1341,144,0
chrIX	86200	.	G	A	2527	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.54;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2560,276,0
chrIX	86463	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.58;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1088,117,0
chrIX	86586	.	T	G	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.716;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.000;QD=17.06;ReadPosRankSum=1.689;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1398,156,0
chrIX	86602	.	A	G	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=83;Dels=0.00;FS=2.836;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=1.054;QD=16.98;ReadPosRankSum=2.301;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1442,159,0
chrIX	86634	.	G	A	1030	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=15.37;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1063,114,0
chrIX	86636	.	A	G	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=3.041;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=0.505;QD=15.06;ReadPosRankSum=2.301;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1027,114,0
chrIX	86713	.	G	A	1206	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.44;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1239,138,0
chrIX	86925	.	A	G	1397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=6.960;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.058;QD=21.83;ReadPosRankSum=2.373;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1430,159,0
chrIX	87283	.	C	T	1881	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1914,204,0
chrIX	87642	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.56;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1350,147,0
chrIX	87789	.	T	C	964	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:997,111,0
chrIX	88146	.	C	A	1910	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.01;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1943,213,0
chrIX	88393	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.53;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1903,216,0
chrIX	88444	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.10;SB=-1.460e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2051,222,0
chrIX	88448	.	T	C	1861	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=15.25;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,117:122:99:1894,207,0
chrIX	88786	.	C	T	1953	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.34;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1986,213,0
chrIX	88896	.	A	G	1877	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.77;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,96:100:99:1910,216,0
chrIX	89545	.	C	T	1864	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.71;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1897,210,0
chrIX	89750	.	T	C	2964	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.12;SB=-1.668e+03	GT:AD:DP:GQ:PL	1/1:0,132:134:99:2997,327,0
chrIX	90011	.	G	A	2256	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.79;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2289,246,0
chrIX	90209	.	G	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.84;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1450,156,0
chrIX	90560	.	G	A	942	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.62;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:975,108,0
chrIX	90617	.	A	G	772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.445;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.165;QD=18.38;ReadPosRankSum=1.403;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:90:805,90,0
chrIX	90627	.	T	A	662	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.042;QD=16.15;ReadPosRankSum=1.564;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:78:695,78,0
chrIX	90720	.	T	C	1435	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.74;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1468,162,0
chrIX	90773	.	T	C	911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.956;DP=51;Dels=0.00;FS=3.100;HaplotypeScore=5.7982;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.272;QD=17.86;ReadPosRankSum=1.064;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:2,48:51:99:944,105,0
chrIX	90983	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.94;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1331,141,0
chrIX	91079	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.84;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1802,192,0
chrIX	91130	.	C	T	1822	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.06;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1855,201,0
chrIX	91277	.	C	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1471,159,0
chrIX	91358	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=4.320;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.546;QD=20.11;ReadPosRankSum=1.685;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1501,165,0
chrIX	91493	.	G	A	1742	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.49;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1775,192,0
chrIX	91709	.	A	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.00;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1356,147,0
chrIX	91834	.	T	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.21;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1488,159,0
chrIX	91886	.	G	A	843	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=15.33;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:876,96,0
chrIX	91967	.	T	C	1209	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.32;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1242,138,0
chrIX	91970	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=16.48;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1137,123,0
chrIX	92246	.	C	T	1364	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.98;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1397,153,0
chrIX	92420	.	T	C	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.176;QD=20.14;ReadPosRankSum=1.682;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1423,159,0
chrIX	93150	.	G	C	2466	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.66;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2499,276,0
chrIX	93194	.	G	A	1901	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.89;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1934,207,0
chrIX	93195	.	C	A	1862	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.16;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1895,201,0
chrIX	93313	.	G	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.41;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1344,144,0
chrIX	93546	.	G	A	2249	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.1903;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.90;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,115:119:99:2282,255,0
chrIX	93577	.	T	C	2266	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.00;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2299,258,0
chrIX	93804	.	C	T	911	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:944,105,0
chrIX	93856	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.91;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1392,153,0
chrIX	93903	.	G	A	1614	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.93;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1647,180,0
chrIX	94089	.	G	C	1605	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.58;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1638,183,0
chrIX	94201	.	A	G	1332	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.6316;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.14;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1365,150,0
chrIX	94443	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.88;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1912,213,0
chrIX	94563	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.600;QD=23.07;ReadPosRankSum=2.313;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1694,186,0
chrIX	94593	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=16.94;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1558,174,0
chrIX	94596	.	T	C	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=2.754;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.992;QD=16.33;ReadPosRankSum=2.324;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:99:1633,183,0
chrIX	94805	.	A	T	2043	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.70;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2076,219,0
chrIX	94886	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=3.054;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=1.522;QD=18.73;ReadPosRankSum=1.452;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:1,98:100:99:1906,213,0
chrIX	94907	.	A	G	1820	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=17.33;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1853,210,0
chrIX	94908	.	T	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.21;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1857,207,0
chrIX	94919	.	A	C	2127	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.18;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2160,240,0
chrIX	95013	.	G	A	1206	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.93;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1239,132,0
chrIX	95030	.	T	G	867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.582;DP=47;Dels=0.00;FS=5.166;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=1.506;QD=18.45;ReadPosRankSum=1.431;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:83:900,83,0
chrIX	95057	.	A	G	713	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.27;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:746,84,0
chrIX	95341	.	C	G	1637	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.9610;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.26;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,81:85:99:1670,189,0
chrIX	95368	.	G	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.58;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1618,177,0
chrIX	95527	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1674;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=15.66;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1458,162,0
chrIX	95590	.	C	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.44;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1569,168,0
chrIX	95696	.	G	A	1707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.003;HaplotypeScore=8.1383;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.428;QD=18.16;ReadPosRankSum=-0.950;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1740,192,0
chrIX	95875	.	T	C	1027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.724;QD=18.67;ReadPosRankSum=1.669;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1060,117,0
chrIX	96845	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.84;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1126,123,0
chrIX	96860	.	G	A	1328	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.25;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1361,144,0
chrIX	96868	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=16.45;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1135,129,0
chrIX	97661	.	A	T	1777	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4553;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.672;QD=18.71;ReadPosRankSum=2.398;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1810,198,0
chrIX	98144	.	G	A	1257	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2504;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.76;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1290,141,0
chrIX	98294	.	C	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.89;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1370,150,0
chrIX	98880	.	C	T	1247	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.11;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1280,141,0
chrIX	98932	.	A	G	813	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.6312;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=16.94;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:93:846,93,0
chrIX	99518	.	T	C	1977	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2010,222,0
chrIX	99686	.	C	T	930	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.24;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:963,111,0
chrIX	99857	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.23;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1398,156,0
chrIX	100355	.	A	G	1798	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=3.063;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.480;QD=21.15;ReadPosRankSum=1.649;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:1,82:85:99:1831,204,0
chrIX	100415	.	T	C	1792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.278;QD=22.12;ReadPosRankSum=1.689;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1825,204,0
chrIX	100450	.	T	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.76;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1337,150,0
chrIX	100595	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.33;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1328,147,0
chrIX	101006	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=0.491;QD=18.97;ReadPosRankSum=1.681;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1304,144,0
chrIX	101012	.	C	T	1336	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=19.65;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1369,147,0
chrIX	101027	.	G	A	1067	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=17.78;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1100,120,0
chrIX	101030	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=16.53;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1025,114,0
chrIX	101207	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.732;QD=19.45;ReadPosRankSum=1.664;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1025,111,0
chrIX	101270	.	A	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4029;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.56;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1559,168,0
chrIX	101315	.	C	A	1427	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.29;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1460,159,0
chrIX	101321	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.18;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1415,159,0
chrIX	101559	.	T	C	1146	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.79;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1179,132,0
chrIX	101954	.	G	A	1733	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1766,192,0
chrIX	102079	.	C	A	2035	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.12;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2068,222,0
chrIX	102366	.	A	T	1953	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.509;QD=21.00;ReadPosRankSum=1.658;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1986,216,0
chrIX	102495	.	A	C	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=84;Dels=0.00;FS=12.800;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.662;QD=17.64;ReadPosRankSum=3.182;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:4,80:84:99:1515,168,0
chrIX	102597	.	C	T	792	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=15.23;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:825,90,0
chrIX	102600	.	G	T	698	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=14.54;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:731,84,0
chrIX	103132	.	A	G	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.314;QD=21.36;ReadPosRankSum=1.673;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1272,138,0
chrIX	103387	.	C	A	1349	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.45;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1382,150,0
chrIX	103838	.	A	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.50;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1537,162,0
chrIX	103927	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1539,168,0
chrIX	104128	.	G	A	1151	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1184,126,0
chrIX	104638	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.16;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1052,117,0
chrIX	104826	.	T	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=16.42;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1133,126,0
chrIX	104829	.	T	C	1050	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=15.67;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1083,120,0
chrIX	104874	.	C	T	1291	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.2328;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=15.74;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1324,147,0
chrIX	105090	.	T	C	1772	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.72;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1805,198,0
chrIX	105352	.	T	C	1705.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.574;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=18.2220;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=1.037;QD=13.43;ReadPosRankSum=-4.507;SB=-5.408e+01	GT:AD:DP:GQ:PL	1/1:17,110:127:20:1738,20,0
chrIX	105355	.	T	C	1425.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;DP=127;Dels=0.00;FS=3.116;HaplotypeScore=14.0466;MLEAC=1;MLEAF=0.500;MQ=55.24;MQ0=0;MQRankSum=-1.242;QD=11.22;ReadPosRankSum=-3.322;SB=-5.301e+01	GT:AD:DP:GQ:PL	0/1:25,101:127:66:1455,0,66
chrIX	105770	.	A	G	107.26	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.32;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:0,7:7:15:140,15,0
chrIX	105904	.	C	G	939	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:37:99:972,108,0
chrIX	105959	.	A	G	676	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.33;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:81:709,81,0
chrIX	105961	.	G	A	559	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=14.71;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,37:38:69:592,69,0
chrIX	106374	.	A	T	2247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.610;DP=112;Dels=0.00;FS=11.647;HaplotypeScore=8.3557;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.027;QD=20.06;ReadPosRankSum=2.846;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:3,109:112:99:2280,252,0
chrIX	106806	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.48;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1641,183,0
chrIX	107538	.	G	A	1801	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.66;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1834,207,0
chrIX	107661	.	A	C	2659	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.16;SB=-1.366e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2692,294,0
chrIX	107705	.	T	C	2711	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.37;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2744,300,0
chrIX	108375	.	C	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.21;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1721,186,0
chrIX	108750	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.84;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1906,213,0
chrIX	109200	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.85;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1354,144,0
chrIX	109578	.	A	G	2074	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.60;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2107,234,0
chrIX	109934	.	C	T	1475	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.38;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1508,168,0
chrIX	110073	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.99;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1392,153,0
chrIX	110376	.	T	C	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=58;Dels=0.00;FS=3.002;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.300;QD=21.29;ReadPosRankSum=2.280;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1268,138,0
chrIX	110507	.	G	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.88;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1360,147,0
chrIX	110559	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.67;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1508,168,0
chrIX	111173	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1802,192,0
chrIX	111519	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.96;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1570,177,0
chrIX	111569	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.25;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1499,159,0
chrIX	111631	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=23.00;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1505,162,0
chrIX	111894	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.681;QD=19.50;ReadPosRankSum=1.630;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1359,150,0
chrIX	112032	.	A	G	942	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;QD=13.08;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:975,108,0
chrIX	112036	.	A	G	844	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;MQRankSum=-0.543;QD=12.60;ReadPosRankSum=1.681;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:96:877,96,0
chrIX	112038	.	A	G	859	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=12.82;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:892,99,0
chrIX	112043	.	T	A	764	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=7.361;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;MQRankSum=-0.534;QD=11.40;ReadPosRankSum=2.376;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:87:797,87,0
chrIX	112143	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.98;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1412,159,0
chrIX	112368	.	A	G	919	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.76;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:952,105,0
chrIX	112854	.	T	A	1284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.018;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.570;QD=16.05;ReadPosRankSum=0.817;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1317,147,0
chrIX	113159	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.51;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1625,174,0
chrIX	113502	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3906;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.80;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1101,120,0
chrIX	113517	.	G	A	1221	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.50;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1254,132,0
chrIX	113518	.	G	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.70;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1267,138,0
chrIX	113558	.	G	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.96;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1710,180,0
chrIX	113610	.	C	T	2000	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.80;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2033,225,0
chrIX	113679	.	G	A	2873	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.77;SB=-1.536e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2906,315,0
chrIX	113792	.	A	G	905	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.75;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:938,105,0
chrIX	113799	.	C	A	912	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.24;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:945,102,0
chrIX	113838	.	C	T	958	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.42;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:991,114,0
chrIX	114027	.	A	G	1171	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=16.97;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1204,138,0
chrIX	114549	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.43;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1439,156,0
chrIX	114791	.	A	G	1031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.850;QD=18.75;ReadPosRankSum=1.669;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1064,117,0
chrIX	114808	.	G	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.33;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1425,156,0
chrIX	114886	.	G	A	2309	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.25;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2342,252,0
chrIX	115136	.	C	T	2116	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.04;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2149,237,0
chrIX	116694	.	C	A	2618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.014;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.0793;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.670;QD=23.17;ReadPosRankSum=0.921;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:1,110:113:99:2651,282,0
chrIX	117012	.	T	A	2877	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.02;SB=-1.499e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2910,312,0
chrIX	117336	.	A	T	1630	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.91;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1663,180,0
chrIX	117516	.	C	G	1668	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.54;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1701,186,0
chrIX	117781	.	G	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8797;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.29;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1438,156,0
chrIX	117852	.	C	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1676,186,0
chrIX	118750	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=4.607;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.755;QD=22.91;ReadPosRankSum=1.599;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1820,201,0
chrIX	119687	.	G	A	2089	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.46;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2122,228,0
chrIX	120214	.	T	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1542;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.59;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1708,186,0
chrIX	121460	.	A	G	910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.461;QD=17.84;ReadPosRankSum=1.664;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:943,105,0
chrIX	121652	.	G	A	857	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.49;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:890,99,0
chrIX	136410	.	G	C	1268	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.86;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1301,144,0
chrIX	159746	.	T	C	1973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.635;QD=19.16;ReadPosRankSum=1.698;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:1,100:103:99:2006,228,0
chrIX	160170	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.7853;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.44;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1464,162,0
chrIX	160363	.	A	G	1133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.319;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.326;QD=15.74;ReadPosRankSum=-0.942;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:97:1166,97,0
chrIX	160498	.	G	A	1556	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6529;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.55;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1589,174,0
chrIX	161291	.	C	T	1292	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.94;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1325,147,0
chrIX	161738	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=69;Dels=0.00;FS=5.930;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.567;QD=20.35;ReadPosRankSum=2.897;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:3,65:69:99:1437,159,0
chrIX	162266	.	T	C	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.352;QD=20.00;ReadPosRankSum=1.648;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1673,189,0
chrIX	164017	.	C	T	2126	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.25;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2159,234,0
chrIX	164332	.	C	T	2154	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.91;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2187,237,0
chrIX	165039	.	C	G	815	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:848,93,0
chrIX	166175	.	C	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.68;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1391,153,0
chrIX	167610	.	G	T	3916.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.04;SB=-2.052e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:3916,426,0
chrIX	168471	.	C	T	1111	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.3307;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1144,126,0
chrIX	171535	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.00;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:84:99:1881,204,0
chrIX	172231	.	G	A	2973	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.79;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:3006,327,0
chrIX	173363	.	G	T	908	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=14.19;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:941,105,0
chrIX	173635	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=24.93;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1504,168,0
chrIX	173732	.	G	A	1053	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.06;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1086,117,0
chrIX	173848	.	G	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=22.01;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1838,198,0
chrIX	173888	.	G	C	1332	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=21.48;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1365,150,0
chrIX	174010	.	T	C	1781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=50.97;MQ0=0;MQRankSum=-1.498;QD=20.01;ReadPosRankSum=2.394;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:2,86:89:99:1814,201,0
chrIX	174021	.	C	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=11.3696;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=19.40;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1876,201,0
chrIX	174100	.	C	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=19.63;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1682,183,0
chrIX	174271	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=21.99;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1594,171,0
chrIX	174273	.	A	G	1491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;MQRankSum=-1.188;QD=21.30;ReadPosRankSum=1.683;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1524,168,0
chrIX	174304	.	T	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1036;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=18.35;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1391,156,0
chrIX	174345	.	T	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=16.45;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1826,204,0
chrIX	174391	.	T	A	2781	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.45;SB=-1.821e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2814,300,0
chrIX	174414	.	G	A	3033	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.9045;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=17.95;SB=-2.031e+03	GT:AD:DP:GQ:PL	1/1:0,168:169:99:3066,339,0
chrIX	174452	.	A	G	2648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;DP=160;Dels=0.00;FS=9.273;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;MQRankSum=0.811;QD=16.55;ReadPosRankSum=2.419;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:2,157:160:99:2681,303,0
chrIX	174453	.	A	T	2771	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=17.32;SB=-1.433e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:2804,300,0
chrIX	174511	.	G	C	2041	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.5474;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=17.90;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2074,231,0
chrIX	174546	.	T	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=24.19;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1654,183,0
chrIX	174641	.	G	A	985	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=0;QD=16.98;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1018,117,0
chrIX	174643	.	C	T	987	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;QD=16.73;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1020,114,0
chrIX	174652	.	G	A	864	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.24;MQ0=0;QD=14.40;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:897,102,0
chrIX	174680	.	C	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=14.24;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1087,120,0
chrIX	174681	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=14.41;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1128,126,0
chrIX	174751	.	G	A	2562	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.8096;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=20.33;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2595,282,0
chrIX	174904	.	A	C	2040	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=20.82;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2073,225,0
chrIX	174984	.	A	G	179.03	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;QD=3.58;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:24:212,24,0
chrIX	175014	.	T	A	902	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=14.09;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:935,102,0
chrIX	175028	.	C	A	966	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=1;QD=13.42;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:999,111,0
chrIX	175104	.	A	T	38.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=57.6272;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=1;MQRankSum=1.509;QD=0.60;ReadPosRankSum=1.676;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:9:71,9,0
chrIX	175120	.	C	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=135.3111;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=15.59;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1187,129,0
chrIX	175126	.	A	C	1067	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=15.03;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1100,123,0
chrIX	175167	.	C	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=14.54;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:1850,207,0
chrIX	175175	.	G	C	2051	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=16.15;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2084,228,0
chrIX	175368	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=21.18;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1579,177,0
chrIX	175484	.	A	G	1373	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=1.195;QD=23.67;ReadPosRankSum=1.673;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1406,156,0
chrIX	175568	.	G	A	1038	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1071,117,0
chrIX	175751	.	A	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=14.22;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1071,117,0
chrIX	175755	.	T	G	909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-1.431;QD=12.99;ReadPosRankSum=1.632;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:942,105,0
chrIX	176421	.	G	T	1680	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.4362;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.35;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1713,183,0
chrIX	176578	.	C	T	1096	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.08;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1129,123,0
chrIX	177066	.	T	C	1397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.837;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.439;QD=18.63;ReadPosRankSum=1.686;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1430,162,0
chrIX	177466	.	C	T	309	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.66;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:42:342,42,0
chrIX	177592	.	G	C	937	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:40:99:970,105,0
chrIX	177853	.	T	C	1336	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.55;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1369,156,0
chrIX	178160	.	C	T	1201	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.84;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1234,135,0
chrIX	179273	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=70;Dels=0.00;FS=5.693;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=0.899;QD=16.70;ReadPosRankSum=2.233;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1202,138,0
chrIX	179673	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.91;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1765,186,0
chrIX	179763	.	G	A	1008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=9.5737;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;MQRankSum=0.000;QD=16.26;ReadPosRankSum=1.559;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1041,114,0
chrIX	179764	.	A	G	1031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.137;DP=64;Dels=0.00;FS=9.069;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-0.451;QD=16.11;ReadPosRankSum=2.176;SB=-6.601e+01	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1064,117,0
chrIX	180009	.	T	A	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=50;Dels=0.00;FS=5.847;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.272;QD=20.92;ReadPosRankSum=2.857;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:3,46:50:99:1079,117,0
chrIX	180087	.	C	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.48;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1515,162,0
chrIX	180128	.	T	C	1798	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.20;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1831,201,0
chrIX	180379	.	A	G	1428	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.31;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1461,165,0
chrIX	180412	.	G	A	2368	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9613;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.72;SB=-1.355e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2401,258,0
chrIX	180792	.	A	T	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.017;QD=17.78;ReadPosRankSum=1.677;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1153,123,0
chrIX	180798	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=17.02;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1088,120,0
chrIX	180891	.	C	G	1288	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.4434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.47;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1321,147,0
chrIX	181236	.	A	G	966	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.47;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:999,108,0
chrIX	181676	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=17.17;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1149,126,0
chrIX	181677	.	A	G	1103	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.23;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1136,123,0
chrIX	182483	.	C	T	2164	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.01;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2197,237,0
chrIX	182837	.	G	A	2092	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.51;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2125,237,0
chrIX	182939	.	C	T	1691	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.41;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1724,183,0
chrIX	183064	.	T	G	1456	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.68;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1489,165,0
chrIX	183089	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.9668;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.25;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1902,204,0
chrIX	183268	.	T	C	210	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.791;DP=68;Dels=0.00;FS=7.926;HaplotypeScore=6.7667;MLEAC=2;MLEAF=1.00;MQ=48.06;MQ0=0;MQRankSum=-0.714;QD=3.09;ReadPosRankSum=-0.637;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:5,63:68:30:243,30,0
chrIX	183280	.	A	G	859	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=67;Dels=0.00;FS=3.522;HaplotypeScore=12.7403;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-1.732;QD=12.82;ReadPosRankSum=1.677;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,63:67:99:892,102,0
chrIX	183332	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.76;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1744,198,0
chrIX	183373	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.3791;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.66;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1701,189,0
chrIX	183552	.	G	T	2330	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.91;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2363,255,0
chrIX	183567	.	T	C	2817	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=21.84;SB=-1.616e+03	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2850,306,0
chrIX	183658	.	A	T	2402	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.66;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2435,264,0
chrIX	183795	.	A	C	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.207;DP=66;Dels=0.00;FS=3.882;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.155;QD=20.56;ReadPosRankSum=1.155;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1390,137,0
chrIX	183943	.	A	G	2087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.728;DP=101;Dels=0.00;FS=12.466;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.954;QD=20.66;ReadPosRankSum=3.744;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:5,93:101:99:2120,237,0
chrIX	184053	.	C	T	1672	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1705,186,0
chrIX	184585	.	T	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.00;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1356,144,0
chrIX	184665	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.03;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1610,177,0
chrIX	184857	.	T	C	1120	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.8749;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.36;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1153,126,0
chrIX	184925	.	C	A	971	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.42;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1004,108,0
chrIX	184947	.	T	A	800	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=15.69;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:90:833,90,0
chrIX	185013	.	T	G	1060	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=18.60;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1093,117,0
chrIX	185152	.	T	A	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.492;QD=22.08;ReadPosRankSum=1.636;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1623,177,0
chrIX	185367	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.42;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1513,171,0
chrIX	185961	.	A	G	1442	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1475,165,0
chrIX	186053	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.65;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1251,132,0
chrIX	186072	.	A	G	1002	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.89;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1035,114,0
chrIX	186216	.	G	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1245,132,0
chrIX	186691	.	G	A	3096	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.4668;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.93;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3129,336,0
chrIX	186739	.	G	A	2863	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.5253;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.02;SB=-1.361e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:2896,309,0
chrIX	187102	.	T	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.68;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1658,186,0
chrIX	187360	.	A	G	2118	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=3.102;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.191;QD=22.06;ReadPosRankSum=1.696;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2151,237,0
chrIX	187747	.	G	A	2975	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.19;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3008,318,0
chrIX	187968	.	T	C	1273	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.354;QD=23.15;ReadPosRankSum=1.669;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1306,144,0
chrIX	188473	.	G	A	2297	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.93;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2330,258,0
chrIX	189367	.	T	C	1677	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.70;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,77:81:99:1710,189,0
chrIX	190811	.	T	A	847	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.17;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:880,93,0
chrIX	190922	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.48;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1202,135,0
chrIX	190936	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.94;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1283,144,0
chrIX	191287	.	G	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.72;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1463,159,0
chrIX	191327	.	A	G	1511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.526;QD=17.99;ReadPosRankSum=1.650;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1544,168,0
chrIX	191432	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.066;QD=17.91;ReadPosRankSum=1.688;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1466,159,0
chrIX	191501	.	G	A	1011	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.09;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1044,117,0
chrIX	191573	.	T	C	1039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.666;QD=19.60;ReadPosRankSum=1.666;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1072,117,0
chrIX	192137	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.03;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1487,162,0
chrIX	192389	.	G	A	2066	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.75;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2099,225,0
chrIX	193262	.	A	G	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.856;QD=19.09;ReadPosRankSum=1.653;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1713,189,0
chrIX	193298	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=65;Dels=0.00;FS=5.892;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.590;QD=16.94;ReadPosRankSum=2.887;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:3,59:65:99:1134,126,0
chrIX	193732	.	A	C	1004	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=16.46;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1037,117,0
chrIX	193744	.	A	G	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.293;QD=16.91;ReadPosRankSum=1.679;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1132,126,0
chrIX	193815	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.335;QD=19.07;ReadPosRankSum=1.675;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1196,132,0
chrIX	194026	.	A	G	1283	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.75;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1316,144,0
chrIX	194170	.	C	T	960	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.20;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:993,108,0
chrIX	194267	.	C	T	1532	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.91;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1565,168,0
chrIX	194587	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.69;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1136,126,0
chrIX	194686	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.25;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1301,141,0
chrIX	195072	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.86;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1679,177,0
chrIX	195082	.	T	C	1646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=2.989;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.683;QD=22.24;ReadPosRankSum=2.317;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1679,189,0
chrIX	195274	.	C	G	1971	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.75;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2004,225,0
chrIX	195521	.	T	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.17;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1065,114,0
chrIX	195618	.	T	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.81;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1533,171,0
chrIX	195861	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.681;DP=55;Dels=0.00;FS=13.376;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.076;QD=20.29;ReadPosRankSum=2.832;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:3,51:55:99:1149,126,0
chrIX	197241	.	T	A	2009	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=21.15;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2042,225,0
chrIX	197357	.	C	T	843	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=0;QD=17.20;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:93:876,93,0
chrIX	197358	.	C	T	846	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=0;QD=17.27;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:93:879,93,0
chrIX	197362	.	C	T	757	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=14.56;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:790,90,0
chrIX	197377	.	C	T	906	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=16.78;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:939,108,0
chrIX	197381	.	T	C	851	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.81;MQ0=0;QD=16.69;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:884,99,0
chrIX	197384	.	A	G	766	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=14.73;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:90:799,90,0
chrIX	197389	.	C	A	898	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=16.33;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:931,102,0
chrIX	197500	.	C	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.37;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1700,186,0
chrIX	197573	.	T	A	1729	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.584;QD=24.70;ReadPosRankSum=1.633;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1762,195,0
chrIX	197698	.	A	G	759	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=18.97;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:792,87,0
chrIX	197721	.	C	T	705	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=19.58;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:738,81,0
chrIX	197744	.	C	T	584	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=0;QD=17.70;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:66:617,66,0
chrIX	197853	.	T	C	12.99	LowQual;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=0.54;SB=-2.768e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:6:44,6,0
chrIX	197931	.	T	C	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.071;QD=20.39;ReadPosRankSum=1.626;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2031,216,0
chrIX	197949	.	G	A	2273	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.73;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2306,249,0
chrIX	198073	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.84;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1541,174,0
chrIX	199233	.	C	T	2644	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3778;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.40;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2677,291,0
chrIX	199422	.	T	C	774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=4.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.866;QD=12.90;ReadPosRankSum=1.675;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:90:807,90,0
chrIX	199445	.	T	C	953	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=15.62;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:986,111,0
chrIX	199623	.	T	A	1660	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=15.81;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1693,183,0
chrIX	199628	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8324;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=12.72;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1305,144,0
chrIX	200296	.	C	T	2031	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.38;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2064,219,0
chrIX	200335	.	C	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8423;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.98;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1589,171,0
chrIX	200346	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=0.253;QD=15.88;ReadPosRankSum=1.690;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1335,147,0
chrIX	200366	.	G	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.05;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1513,162,0
chrIX	200410	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.84;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1414,159,0
chrIX	200428	.	A	C	1568	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=18.89;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1601,183,0
chrIX	200595	.	G	A	823	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=15.24;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:93:856,93,0
chrIX	200781	.	G	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=18.14;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1230,135,0
chrIX	201057	.	T	C	617	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=16.68;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:72:650,72,0
chrIX	201273	.	G	A	773	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.98;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:90:806,90,0
chrIX	201927	.	G	A	1931	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3627;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.27;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1964,210,0
chrIX	202086	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.41;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1666,183,0
chrIX	202303	.	C	T	1961	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.54;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1994,219,0
chrIX	202381	.	A	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.18;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1244,138,0
chrIX	202393	.	G	A	1320	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.33;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1353,153,0
chrIX	202695	.	T	G	1675	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.48;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1708,195,0
chrIX	202909	.	C	G	3324.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=14.3164;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.91;SB=-1.866e+03	GT:AD:DP:GQ:PL	1/1:0,158:159:99:3324,363,0
chrIX	203744	.	G	A	1783	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.74;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1816,195,0
chrIX	204114	.	T	C	2402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.458;QD=22.66;ReadPosRankSum=1.699;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2435,270,0
chrIX	204156	.	A	T	2343	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.2295;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.45;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2376,267,0
chrIX	204360	.	A	G	2173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=114;Dels=0.00;FS=3.127;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.966;QD=19.06;ReadPosRankSum=1.701;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:1,112:114:99:2206,243,0
chrIX	204609	.	A	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.03;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1947,213,0
chrIX	204924	.	C	T	1266	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=20.75;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1299,141,0
chrIX	204963	.	G	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.91;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1432,156,0
chrIX	205192	.	G	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=20.71;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1338,150,0
chrIX	206309	.	T	C	248.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=89;Dels=0.02;FS=12.340;HaplotypeScore=5.4471;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=22;MQRankSum=-2.426;QD=2.79;ReadPosRankSum=1.856;SB=-1.070e+02	GT:AD:DP:GQ:PL	0/1:28,57:87:87:278,0,87
chrIX	206310	.	C	T	250.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.612;DP=88;Dels=0.00;FS=7.088;HaplotypeScore=3.8698;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=23;MQRankSum=-2.296;QD=2.84;ReadPosRankSum=2.758;SB=-1.070e+02	GT:AD:DP:GQ:PL	0/1:31,56:88:80:280,0,80
chrIX	206333	.	C	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.13;MQ0=19;QD=0.43;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,51:53:6:54,6,0
chrIX	206334	.	A	G	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.71;MQ0=18;QD=0.44;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:18,32:50:6:53,6,0
chrIX	206336	.	C	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.97;MQ0=16;QD=0.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:16,32:48:6:54,6,0
chrIX	206586	.	C	G	712	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.133;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=19;MQRankSum=1.869;QD=10.79;ReadPosRankSum=0.756;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:13,52:66:62:745,62,0
chrIX	206609	.	A	G	289.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;DP=73;Dels=0.00;FS=9.708;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.58;MQ0=39;MQRankSum=-0.625;QD=3.96;ReadPosRankSum=1.054;SB=-1.395e+02	GT:AD:DP:GQ:PL	0/1:30,42:73:30:319,0,30
chrIX	206934	.	C	A	151.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9048;MLEAC=2;MLEAF=1.00;MQ=13.37;MQ0=19;MQRankSum=0.678;QD=3.60;ReadPosRankSum=0.075;SB=-5.768e-02	GT:AD:DP:GQ:PL	1/1:12,30:42:21:184,21,0
chrIX	207309	.	C	T	38.08	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.30;MQ0=28;MQRankSum=0.676;QD=1.00;ReadPosRankSum=0.103;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,17:38:15:68,0,15
chrIX	207537	.	T	C	74.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.783;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.2055;MLEAC=2;MLEAF=1.00;MQ=16.20;MQ0=21;MQRankSum=-2.293;QD=2.07;ReadPosRankSum=2.123;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,34:36:12:107,12,0
chrIX	207573	.	C	T	699.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=83;Dels=0.00;FS=10.286;HaplotypeScore=12.8297;MLEAC=1;MLEAF=0.500;MQ=28.68;MQ0=14;MQRankSum=0.283;QD=8.42;ReadPosRankSum=2.954;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:29,54:83:99:729,0,438
chrIX	208230	.	G	A	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.92;MQ0=12;QD=1.19;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:6:49,6,0
chrIX	208248	.	A	G	125.13	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=12;QD=5.69;SB=-2.607e+01	GT:AD:DP:GQ:PL	1/1:3,19:22:18:158,18,0
chrIX	208281	.	T	C	436	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=13;QD=10.38;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:3,39:42:51:469,51,0
chrIX	208386	.	A	G	86.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;DP=59;Dels=0.00;FS=34.672;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.01;MQ0=31;MQRankSum=1.045;QD=1.46;ReadPosRankSum=-1.370;SB=-4.700e+01	GT:AD:DP:GQ:PL	0/1:30,27:59:99:116,0,199
chrIX	208462	.	G	A	50.97	filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.64;MQ0=52;QD=0.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:28,28:57:9:83,9,0
chrIX	208696	.	T	C	56.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;DP=85;Dels=0.00;FS=5.752;HaplotypeScore=8.8602;MLEAC=1;MLEAF=0.500;MQ=42.71;MQ0=16;MQRankSum=-3.616;QD=0.66;ReadPosRankSum=1.364;SB=-7.007e+00	GT:AD:DP:GQ:PL	0/1:59,25:85:86:86,0,1102
chrIX	208741	.	A	G	197.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080;DP=95;Dels=0.00;FS=17.711;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=42.82;MQ0=15;MQRankSum=-4.938;QD=2.07;ReadPosRankSum=-2.018;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,36:95:99:227,0,1098
chrIX	208944	.	C	T	1147.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DP=143;Dels=0.00;FS=82.297;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=56;MQRankSum=1.719;QD=8.02;ReadPosRankSum=2.112;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:60,82:143:99:1177,0,333
chrIX	209019	.	G	A	656.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;DP=146;Dels=0.00;FS=101.935;HaplotypeScore=13.8614;MLEAC=1;MLEAF=0.500;MQ=39.15;MQ0=7;MQRankSum=-3.392;QD=4.49;ReadPosRankSum=-0.297;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,54:146:99:686,0,1591
chrIX	209259	.	A	G	862	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=17;QD=11.81;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:895,102,0
chrIX	209356	.	C	T	294.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.007;DP=155;Dels=0.00;FS=4.773;HaplotypeScore=24.1518;MLEAC=1;MLEAF=0.500;MQ=34.51;MQ0=12;MQRankSum=-5.236;QD=1.90;ReadPosRankSum=1.026;SB=-2.601e+01	GT:AD:DP:GQ:PL	0/1:100,54:155:99:324,0,1579
chrIX	209365	.	T	C	282.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;DP=137;Dels=0.00;FS=26.271;HaplotypeScore=20.8756;MLEAC=1;MLEAF=0.500;MQ=34.54;MQ0=11;MQRankSum=-5.286;QD=2.06;ReadPosRankSum=3.094;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:83,43:137:99:312,0,1508
chrIX	209570	.	T	C	281.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.293;DP=120;Dels=0.00;FS=6.761;HaplotypeScore=8.8027;MLEAC=1;MLEAF=0.500;MQ=36.00;MQ0=16;MQRankSum=-4.693;QD=2.34;ReadPosRankSum=-1.485;SB=-7.801e+01	GT:AD:DP:GQ:PL	0/1:68,51:120:99:311,0,969
chrIX	209628	.	C	T	266.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.483;DP=91;Dels=0.00;FS=88.136;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=29.35;MQ0=14;MQRankSum=1.260;QD=2.92;ReadPosRankSum=-1.913;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:54,36:91:99:296,0,652
chrIX	209787	.	G	A	426.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=19.37;MQ0=17;MQRankSum=1.656;QD=3.44;ReadPosRankSum=1.471;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,74:124:99:456,0,191
chrIX	210351	.	C	T	207.01	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.64;MQ0=7;QD=6.27;SB=-1.946e-02	GT:AD:DP:GQ:PL	1/1:1,32:33:27:240,27,0
chrIX	211031	.	G	A	936	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.00;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:969,108,0
chrIX	211078	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=8.862;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.883;QD=19.05;ReadPosRankSum=2.317;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1443,159,0
chrIX	211166	.	A	G	2443	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=114;Dels=0.00;FS=16.856;HaplotypeScore=12.3379;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.239;QD=21.43;ReadPosRankSum=2.939;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:3,111:114:99:2476,273,0
chrIX	211326	.	T	C	1852	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.2628;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.71;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1885,207,0
chrIX	211352	.	A	G	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.9032;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.000;QD=18.71;ReadPosRankSum=1.661;SB=-1.302e+03	GT:AD:DP:GQ:PL	1/1:1,97:99:99:1885,210,0
chrIX	211502	.	G	A	2104	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.79;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2137,228,0
chrIX	213953	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.21;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1493,165,0
chrIX	214803	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.05;FS=0.000;HaplotypeScore=20.8424;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=15.23;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1343,144,0
chrIX	214842	.	T	G	1071	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.47;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1104,123,0
chrIX	214890	.	A	T	1057	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.14;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1090,120,0
chrIX	214988	.	C	T	1501	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.24;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1534,165,0
chrIX	215033	.	C	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.7101;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.04;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1413,153,0
chrIX	215186	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.16;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1274,141,0
chrIX	215993	.	C	T	1682	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.6411;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.28;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1715,186,0
chrIX	216106	.	A	G	1460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.509;DP=78;Dels=0.00;FS=20.943;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.061;QD=18.72;ReadPosRankSum=3.713;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:5,73:78:99:1493,165,0
chrIX	216122	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=65;Dels=0.00;FS=2.639;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.339;QD=19.71;ReadPosRankSum=2.856;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:3,60:65:99:1314,147,0
chrIX	216326	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.43;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1121,126,0
chrIX	216395	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-1.178;QD=17.75;ReadPosRankSum=1.686;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:1,74:77:99:1400,156,0
chrIX	216408	.	A	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.22;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1691,180,0
chrIX	216435	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=16.40;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1575,171,0
chrIX	216471	.	G	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=18.94;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1567,171,0
chrIX	216740	.	T	C	1441	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.73;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1474,162,0
chrIX	216864	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.79;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1551,171,0
chrIX	217264	.	T	C	2346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4889;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=1.405;QD=21.93;ReadPosRankSum=1.699;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:1,105:107:99:2379,261,0
chrIX	217335	.	C	T	2208	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.53;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2241,243,0
chrIX	217389	.	A	G	2358	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=105;Dels=0.00;FS=20.675;HaplotypeScore=5.1399;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=1.063;QD=22.46;ReadPosRankSum=3.340;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:4,101:105:99:2391,264,0
chrIX	217459	.	T	C	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.217;QD=24.29;ReadPosRankSum=1.646;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1976,216,0
chrIX	217641	.	A	G	2620	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.20;SB=-1.521e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2653,285,0
chrIX	217652	.	A	T	2725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=0.664;QD=22.71;ReadPosRankSum=1.674;SB=-1.519e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2758,297,0
chrIX	217682	.	A	G	2413	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.28;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2446,270,0
chrIX	217793	.	G	A	1957	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.39;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1990,222,0
chrIX	217875	.	G	A	2049	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.27;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2082,219,0
chrIX	218184	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=75;Dels=0.00;FS=11.163;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.411;QD=18.49;ReadPosRankSum=2.850;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:3,71:75:99:1420,156,0
chrIX	218196	.	T	C	1451	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.60;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1484,165,0
chrIX	218229	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.721;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.000;QD=19.30;ReadPosRankSum=1.652;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1693,192,0
chrIX	218274	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.001;QD=20.97;ReadPosRankSum=1.617;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1920,213,0
chrIX	218286	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.58;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1776,204,0
chrIX	218344	.	C	T	1442	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.97;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1475,162,0
chrIX	218409	.	G	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.09;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1488,162,0
chrIX	218556	.	A	G	1044	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.0818;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=18.64;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1077,120,0
chrIX	218754	.	T	C	1695	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.67;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1728,195,0
chrIX	218780	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.72;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1587,174,0
chrIX	218801	.	A	G	1412	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=4.771;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.069;QD=18.58;ReadPosRankSum=1.686;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1445,162,0
chrIX	218970	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.14;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1838,198,0
chrIX	219135	.	T	G	1742	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.74;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1775,192,0
chrIX	219186	.	G	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=16.52;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1140,123,0
chrIX	219459	.	G	T	1962	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.08;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1995,216,0
chrIX	219833	.	G	A	1704	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=19.59;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1737,183,0
chrIX	219851	.	G	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=20.19;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1608,171,0
chrIX	220569	.	C	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.48;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1519,168,0
chrIX	220677	.	A	T	2588	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.74;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2621,285,0
chrIX	220939	.	G	C	750	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.86;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:90:783,90,0
chrIX	222311	.	A	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.59;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1557,165,0
chrIX	222583	.	A	G	1800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=10.176;HaplotypeScore=11.8785;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=0.874;QD=20.93;ReadPosRankSum=2.393;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1833,204,0
chrIX	223114	.	A	G	1860	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.41;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1893,210,0
chrIX	223276	.	A	G	1457	SnpCluster	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=15.67;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1490,165,0
chrIX	223281	.	G	T	1350	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3001;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=15.34;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1383,147,0
chrIX	223286	.	C	T	1325	SnpCluster	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=15.41;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1358,147,0
chrIX	223333	.	T	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.3796;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=15.72;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1401,147,0
chrIX	223465	.	C	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.68;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1191,135,0
chrIX	223474	.	A	G	1063	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.65;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1096,123,0
chrIX	223504	.	G	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.1200;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=14.89;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1209,129,0
chrIX	223691	.	C	T	1946	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.66;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1979,216,0
chrIX	223718	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3787;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.27;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1575,174,0
chrIX	224455	.	T	C	2395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.364;DP=113;Dels=0.00;FS=8.685;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.443;QD=21.19;ReadPosRankSum=3.271;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:4,109:113:99:2428,264,0
chrIX	224632	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.72;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1532,171,0
chrIX	224666	.	C	T	1597	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.74;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1630,171,0
chrIX	224705	.	A	G	2110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.404;QD=22.21;ReadPosRankSum=1.696;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2143,234,0
chrIX	224745	.	T	C	1944	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.84;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1977,222,0
chrIX	224827	.	A	G	2585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=113;Dels=0.00;FS=3.249;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.608;QD=22.88;ReadPosRankSum=1.701;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2618,288,0
chrIX	224875	.	T	C	2034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=97;Dels=0.00;FS=3.245;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=1.039;QD=20.97;ReadPosRankSum=1.696;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:1,94:97:99:2067,231,0
chrIX	224905	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.91;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1427,156,0
chrIX	224914	.	A	G	1284	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.08;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1317,144,0
chrIX	224926	.	C	T	1341	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.16;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1374,153,0
chrIX	224976	.	G	A	1431	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.89;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1464,162,0
chrIX	225363	.	T	G	1545	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.39;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1578,174,0
chrIX	225676	.	A	T	553	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.28;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:63:586,63,0
chrIX	225885	.	C	T	965	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.74;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:998,108,0
chrIX	226086	.	G	T	970	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=24.25;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1003,108,0
chrIX	226283	.	G	T	1286	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.73;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1319,141,0
chrIX	226398	.	T	G	587	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=13.04;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:69:620,69,0
chrIX	226476	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.75;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1553,168,0
chrIX	226523	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.13;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1219,135,0
chrIX	226583	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=16.54;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1406,150,0
chrIX	226591	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=16.18;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1360,150,0
chrIX	226674	.	C	T	1543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=1.237;QD=24.11;ReadPosRankSum=1.622;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1576,171,0
chrIX	226854	.	G	A	1705	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.71;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1738,186,0
chrIX	226919	.	T	C	1568	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=22.40;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1601,177,0
chrIX	227051	.	G	A	1853	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=5.6848;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.16;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1886,201,0
chrIX	227053	.	G	A	1855	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=6.4735;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.62;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1888,201,0
chrIX	227151	.	C	T	1246	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1279,138,0
chrIX	227301	.	A	T	970	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.65;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1003,105,0
chrIX	227309	.	C	T	919	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.02;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:952,102,0
chrIX	227361	.	G	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=16.41;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1116,120,0
chrIX	227464	.	T	C	1024	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.27;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1057,117,0
chrIX	228015	.	G	A	1911	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.0790;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.77;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1944,216,0
chrIX	228090	.	G	T	1956	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.81;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1989,216,0
chrIX	228152	.	G	A	1843	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.20;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1876,201,0
chrIX	228239	.	T	C	1935	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.79;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1968,219,0
chrIX	228423	.	A	T	1460	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.16;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1493,165,0
chrIX	228430	.	A	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=18.39;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1486,162,0
chrIX	228759	.	C	T	2564	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.89;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2597,282,0
chrIX	228786	.	T	C	2255	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=3.522;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.898;QD=20.69;ReadPosRankSum=1.636;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2288,255,0
chrIX	228903	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.602;QD=22.34;ReadPosRankSum=1.689;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1820,201,0
chrIX	228966	.	T	C	2676	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.76;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,121:123:99:2709,303,0
chrIX	229515	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.00;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1749,192,0
chrIX	229531	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.4167;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.541;QD=20.58;ReadPosRankSum=2.353;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1597,156,0
chrIX	230147	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.64;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1618,177,0
chrIX	230680	.	G	A	2429	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.49;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2462,267,0
chrIX	230953	.	T	C	1445	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=6.113;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.566;QD=20.64;ReadPosRankSum=2.900;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1478,165,0
chrIX	230993	.	C	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1681,183,0
chrIX	231096	.	T	C	2765	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.33;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,134:136:99:2798,318,0
chrIX	231138	.	A	G	3114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.330;DP=135;Dels=0.00;FS=17.515;HaplotypeScore=8.1789;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.020;QD=23.07;ReadPosRankSum=4.320;SB=-1.611e+03	GT:AD:DP:GQ:PL	1/1:7,127:135:99:3147,342,0
chrIX	231757	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=19.56;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1324,147,0
chrIX	232035	.	A	G	2298	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.89;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2331,258,0
chrIX	232425	.	G	A	1546	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.09;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1579,168,0
chrIX	232438	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=3.904;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.403;QD=17.99;ReadPosRankSum=1.652;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1598,180,0
chrIX	232804	.	T	G	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=6.146;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.792;QD=18.06;ReadPosRankSum=1.683;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1297,144,0
chrIX	233042	.	T	C	69.02	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.577;DP=113;Dels=0.00;FS=19.748;HaplotypeScore=98.4289;MLEAC=1;MLEAF=0.500;MQ=52.11;MQ0=0;MQRankSum=-0.879;QD=0.61;ReadPosRankSum=-4.707;SB=-1.739e-02	GT:AD:DP:GQ:PL	0/1:105,8:113:23:99,0,23
chrIX	233043	.	T	C	18.07	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;DP=113;Dels=0.00;FS=15.832;HaplotypeScore=98.4289;MLEAC=1;MLEAF=0.500;MQ=52.11;MQ0=0;MQRankSum=0.914;QD=0.16;ReadPosRankSum=4.411;SB=-7.320e+02	GT:AD:DP:GQ:PL	0/1:7,105:113:48:48,0,54
chrIX	233049	.	G	A	2030	SnpCluster	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.52;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2063,231,0
chrIX	233111	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.91;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1073,120,0
chrIX	233225	.	C	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.22;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1993,216,0
chrIX	233327	.	T	G	1724	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=17.96;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1757,195,0
chrIX	233618	.	T	C	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.386;QD=21.48;ReadPosRankSum=1.188;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1558,174,0
chrIX	233768	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.46;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1342,150,0
chrIX	233990	.	G	A	1639	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.23;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1672,186,0
chrIX	234059	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.79;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1154,129,0
chrIX	234140	.	G	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.90;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1287,138,0
chrIX	234164	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.462;QD=20.70;ReadPosRankSum=1.678;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1358,153,0
chrIX	234893	.	G	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.24;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1613,174,0
chrIX	234965	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.936;QD=22.39;ReadPosRankSum=1.613;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1981,222,0
chrIX	235235	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.4742;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.567;QD=17.53;ReadPosRankSum=1.691;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,83:87:99:1558,177,0
chrIX	235295	.	C	T	2551	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.62;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2584,282,0
chrIX	235496	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=67;Dels=0.00;FS=3.078;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.720;QD=20.25;ReadPosRankSum=1.626;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1390,156,0
chrIX	235921	.	C	T	1718	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0419;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.30;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1751,195,0
chrIX	235995	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.716;DP=96;Dels=0.00;FS=12.646;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.948;QD=18.15;ReadPosRankSum=2.906;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:3,93:96:99:1775,192,0
chrIX	236021	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4301;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=15.03;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1446,162,0
chrIX	236624	.	T	C	1445	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.94;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1478,162,0
chrIX	237295	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1392,153,0
chrIX	237441	.	G	C	1206	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.55;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1239,135,0
chrIX	237594	.	C	T	1839	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=11.7431;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.56;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1872,204,0
chrIX	238224	.	C	T	1586	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.34;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1619,180,0
chrIX	238849	.	G	A	1249	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7006;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.83;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1282,138,0
chrIX	239011	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.685;QD=22.44;ReadPosRankSum=1.685;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1671,183,0
chrIX	239083	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.49;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1549,177,0
chrIX	239275	.	A	G	1476	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.43;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1509,165,0
chrIX	240113	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.74;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1474,159,0
chrIX	242419	.	G	C	1465	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.87;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1498,162,0
chrIX	242535	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.75;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1376,150,0
chrIX	242543	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.85;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1277,141,0
chrIX	242713	.	C	T	2716	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=14.0596;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.73;SB=-1.564e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2749,300,0
chrIX	242863	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.40;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1420,156,0
chrIX	242937	.	G	A	1322	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.67;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1355,144,0
chrIX	243202	.	A	G	1171	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.73;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1204,135,0
chrIX	243230	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.04;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1386,153,0
chrIX	243264	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.13;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,67:71:99:1320,144,0
chrIX	243482	.	A	C	933	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.04;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:966,108,0
chrIX	243933	.	C	T	1602	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.56;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1635,177,0
chrIX	244502	.	G	A	960	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.84;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:993,108,0
chrIX	244618	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1725;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.55;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1533,168,0
chrIX	244765	.	T	G	780	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.14;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:813,93,0
chrIX	244863	.	C	T	842	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.91;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:875,99,0
chrIX	244901	.	G	A	883	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.79;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:916,105,0
chrIX	245022	.	T	C	997	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=16.90;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1030,111,0
chrIX	245220	.	G	A	1137	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.29;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1170,126,0
chrIX	245431	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.75;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1284,141,0
chrIX	245567	.	G	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.88;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1223,135,0
chrIX	245601	.	A	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=22.08;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1402,147,0
chrIX	245693	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=21.11;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1321,147,0
chrIX	245762	.	T	C	612	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=16.54;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:645,72,0
chrIX	245765	.	C	T	639	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.75;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:72:672,72,0
chrIX	245832	.	C	T	864	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1346;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=14.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:96:897,96,0
chrIX	245890	.	G	C	1029	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=13.91;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,68:74:99:1062,117,0
chrIX	245930	.	G	A	698	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=17.90;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:78:731,78,0
chrIX	245931	.	G	A	702	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:78:735,78,0
chrIX	245932	.	G	A	667	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.55;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:78:700,78,0
chrIX	245951	.	A	G	406	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;QD=10.68;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:2,36:38:48:439,48,0
chrIX	245966	.	T	C	82.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.877;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=15.0259;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=1;MQRankSum=-3.129;QD=2.11;ReadPosRankSum=-1.509;SB=2.74	GT:AD:DP:GQ:PL	1/1:27,11:38:15:115,15,0
chrIX	246074	.	A	G	1739	filter	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=25.20;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1772,195,0
chrIX	246094	.	G	T	2534	filter	AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=26.12;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2567,276,0
chrIX	246179	.	T	A	1076	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;QD=26.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1109,117,0
chrIX	246592	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=14.67;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:913,99,0
chrIX	246643	.	A	C	1560	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.80;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1593,189,0
chrIX	246934	.	G	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=21.25;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1712,192,0
chrIX	247021	.	C	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=19.64;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1447,156,0
chrIX	247032	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=21.29;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1353,147,0
chrIX	247058	.	G	C	878	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=19.09;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:911,102,0
chrIX	247121	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=20.80;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:886,96,0
chrIX	247126	.	G	C	800	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=19.51;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:93:833,93,0
chrIX	247255	.	G	A	2176	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=22.43;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2209,240,0
chrIX	247296	.	C	T	985	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=16.69;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1018,111,0
chrIX	247307	.	C	T	691	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=15.36;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:724,81,0
chrIX	247315	.	G	A	493	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=26.7583;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=13.32;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:526,60,0
chrIX	247361	.	G	A	475	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=14.39;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:54:508,54,0
chrIX	247384	.	G	C	530	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.32;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:63:563,63,0
chrIX	247387	.	T	C	572	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;QD=13.95;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:605,66,0
chrIX	247394	.	A	C	557	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=12.95;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:66:590,66,0
chrIX	247422	.	T	G	643	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.35;MQ0=0;QD=12.61;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:78:676,78,0
chrIX	247434	.	G	A	681	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;QD=12.85;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:78:714,78,0
chrIX	247477	.	T	G	449	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.10;MQ0=0;QD=12.83;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:54:482,54,0
chrIX	247481	.	C	G	404	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=0;QD=11.88;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:48:437,48,0
chrIX	247491	.	A	G	319	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=11.39;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:39:352,39,0
chrIX	247492	.	A	T	319	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=11.39;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:39:352,39,0
chrIX	247495	.	C	T	325	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=21.2632;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=11.61;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:39:358,39,0
chrIX	247508	.	T	A	89.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DP=26;Dels=0.00;FS=6.402;HaplotypeScore=3.7178;MLEAC=1;MLEAF=0.500;MQ=27.88;MQ0=0;MQRankSum=-1.137;QD=3.42;ReadPosRankSum=4.133;SB=-1.110e+02	GT:AD:DP:GQ:PL	0/1:11,15:26:31:119,0,31
chrIX	247509	.	T	C	137.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.014;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=-0.829;QD=7.61;ReadPosRankSum=2.606;SB=-1.491e+02	GT:AD:DP:GQ:PL	1/1:3,15:18:21:170,21,0
chrIX	247510	.	C	A	143.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=-0.118;QD=7.95;ReadPosRankSum=2.606;SB=-1.529e+02	GT:AD:DP:GQ:PL	1/1:3,15:18:21:176,21,0
chrIX	247514	.	T	C	114.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.983;DP=35;Dels=0.00;FS=4.938;HaplotypeScore=16.8061;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;MQRankSum=1.517;QD=3.26;ReadPosRankSum=4.983;SB=-1.041e+02	GT:AD:DP:GQ:PL	1/1:20,15:35:18:147,18,0
chrIX	247516	.	C	T	93.34	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=36;Dels=0.00;FS=3.014;HaplotypeScore=31.6509;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=0;MQRankSum=2.214;QD=2.59;ReadPosRankSum=5.038;SB=-1.243e+02	GT:AD:DP:GQ:PL	0/1:21,15:36:8:123,0,8
chrIX	247522	.	T	C	90.98	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.915;DP=36;Dels=0.00;FS=3.014;HaplotypeScore=31.6509;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=0;MQRankSum=0.225;QD=2.53;ReadPosRankSum=4.460;SB=-1.100e+02	GT:AD:DP:GQ:PL	0/1:21,15:36:3:120,0,3
chrIX	247530	.	T	C	171.03	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=17.8008;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=4.39;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:24:204,24,0
chrIX	247539	.	A	T	302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=1.116;QD=6.71;ReadPosRankSum=1.655;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:36:335,36,0
chrIX	247598	.	A	C	343	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.74;MQ0=0;QD=6.73;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:42:376,42,0
chrIX	247608	.	G	A	332	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;QD=6.38;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:39:365,39,0
chrIX	247613	.	C	T	330	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=6.73;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:39:363,39,0
chrIX	247623	.	G	A	341	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=7.10;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:42:374,42,0
chrIX	247635	.	T	A	352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=56;Dels=0.00;FS=3.768;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;MQRankSum=-1.317;QD=6.29;ReadPosRankSum=1.594;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:42:385,42,0
chrIX	247681	.	T	C	947	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=18.57;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:980,108,0
chrIX	247791	.	C	A	1146	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=19.76;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1179,129,0
chrIX	247822	.	C	T	840	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=12.92;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:96:873,96,0
chrIX	247828	.	A	T	925	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.206;DP=81;Dels=0.00;FS=6.672;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=0.285;QD=11.42;ReadPosRankSum=1.644;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:958,105,0
chrIX	247879	.	T	A	1674	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=17.26;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1707,186,0
chrIX	247894	.	C	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=15.29;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:1654,186,0
chrIX	247899	.	A	C	1644	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=15.66;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1677,192,0
chrIX	247930	.	T	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=15.37;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1186,135,0
chrIX	248675	.	T	A	992	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.08;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1025,114,0
chrIX	248941	.	T	A	67.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;DP=48;Dels=0.00;FS=4.231;HaplotypeScore=50.0742;MLEAC=1;MLEAF=0.500;MQ=41.27;MQ0=0;MQRankSum=-1.078;QD=1.40;ReadPosRankSum=4.721;SB=-2.513e+02	GT:AD:DP:GQ:PL	0/1:17,31:48:8:97,0,8
chrIX	248942	.	A	T	66.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;DP=46;Dels=0.00;FS=6.646;HaplotypeScore=50.0742;MLEAC=1;MLEAF=0.500;MQ=40.26;MQ0=0;MQRankSum=-1.570;QD=1.45;ReadPosRankSum=4.850;SB=-2.576e+02	GT:AD:DP:GQ:PL	0/1:15,31:46:5:96,0,5
chrIX	249546	.	T	C	792	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.66;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:90:825,90,0
chrIX	249665	.	A	T	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=70;Dels=0.00;FS=5.601;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.778;QD=19.14;ReadPosRankSum=1.682;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1373,150,0
chrIX	250317	.	C	G	2030	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.71;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2063,228,0
chrIX	250337	.	G	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.63;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1800,192,0
chrIX	250521	.	C	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.07;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1768,195,0
chrIX	250530	.	C	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.23;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1687,180,0
chrIX	250597	.	G	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.57;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1514,162,0
chrIX	250668	.	C	T	1780	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=20.00;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1813,192,0
chrIX	250683	.	T	C	1472	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.52;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1505,168,0
chrIX	250698	.	C	T	1506	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.31;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1539,165,0
chrIX	250881	.	T	C	1860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=91;Dels=0.00;FS=2.754;HaplotypeScore=8.8671;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.671;QD=20.44;ReadPosRankSum=2.395;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:2,88:91:99:1893,210,0
chrIX	251208	.	T	A	1486	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=16.33;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1519,171,0
chrIX	252607	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.55;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1146,123,0
chrIX	253139	.	C	T	1747	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.59;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1780,198,0
chrIX	253199	.	C	G	1133	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=16.42;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1166,129,0
chrIX	253318	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=72;Dels=0.00;FS=3.917;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.075;QD=19.36;ReadPosRankSum=1.682;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1427,159,0
chrIX	253488	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1708,189,0
chrIX	253527	.	C	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1272,138,0
chrIX	254025	.	A	G	517	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.8006;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=10.14;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:63:550,63,0
chrIX	254261	.	T	C	1067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.258;QD=20.92;ReadPosRankSum=1.659;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:1,46:51:99:1100,120,0
chrIX	254311	.	C	A	1043	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=23.70;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1076,114,0
chrIX	254336	.	G	A	822	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=17.49;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:855,99,0
chrIX	254355	.	T	C	952	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0290;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=19.43;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:985,111,0
chrIX	254748	.	T	A	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.642;QD=21.99;ReadPosRankSum=1.693;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1990,210,0
chrIX	254793	.	A	G	1614	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.17;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1647,183,0
chrIX	254949	.	G	C	3511.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=9.8298;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.94;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,157:160:99:3511,387,0
chrIX	255005	.	G	C	3368.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.60;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3368,372,0
chrIX	255654	.	A	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1284,141,0
chrIX	256045	.	C	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.60;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1177,126,0
chrIX	256089	.	G	A	696	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=16.19;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:78:729,78,0
chrIX	256094	.	T	A	629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.578;QD=14.30;ReadPosRankSum=1.650;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:56:662,56,0
chrIX	256304	.	T	C	2138	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=25.45;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2171,243,0
chrIX	256581	.	C	T	2062	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.04;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2095,225,0
chrIX	256673	.	T	C	2923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.4547;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;MQRankSum=-0.040;QD=22.31;ReadPosRankSum=1.679;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,130:131:99:2956,330,0
chrIX	256715	.	T	C	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7044;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;MQRankSum=-1.903;QD=17.06;ReadPosRankSum=2.400;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:2,97:100:99:1739,198,0
chrIX	256728	.	G	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=16.57;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1591,171,0
chrIX	256751	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=4.727;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;MQRankSum=-1.379;QD=12.69;ReadPosRankSum=1.697;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1277,150,0
chrIX	256752	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=13.34;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1340,150,0
chrIX	256796	.	T	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=14.29;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1433,156,0
chrIX	256885	.	C	G	2254	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.31;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2287,261,0
chrIX	256921	.	G	A	2348	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.78;SB=-1.494e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2381,258,0
chrIX	256951	.	G	A	2253	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.79;MQ0=0;QD=16.45;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2286,252,0
chrIX	256984	.	A	G	1732	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;MQRankSum=-1.557;QD=10.96;ReadPosRankSum=1.710;SB=-1.977e+03	GT:AD:DP:GQ:PL	1/1:1,157:158:99:1765,198,0
chrIX	257003	.	C	A	1601	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=151.3760;MLEAC=2;MLEAF=1.00;MQ=33.52;MQ0=0;QD=10.01;SB=-1.951e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:1634,186,0
chrIX	257011	.	T	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;QD=10.88;SB=-1.754e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:1687,189,0
chrIX	257018	.	G	A	1665	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=10.41;SB=-1.756e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:1698,186,0
chrIX	257135	.	G	A	3383.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.17;SB=-1.892e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3383,360,0
chrIX	257350	.	A	G	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;MQRankSum=1.392;QD=18.79;ReadPosRankSum=1.675;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1179,129,0
chrIX	257381	.	T	A	2088	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.08;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2121,231,0
chrIX	257456	.	A	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=13.09;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1447,162,0
chrIX	257516	.	A	G	428	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=6.58;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:51:461,51,0
chrIX	257521	.	C	T	453	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=7.55;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:54:486,54,0
chrIX	257522	.	G	T	401	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=30.60;MQ0=0;QD=6.91;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:48:434,48,0
chrIX	257531	.	C	T	350	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=6.03;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:42:383,42,0
chrIX	257534	.	C	A	359	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=5.70;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:42:392,42,0
chrIX	257575	.	T	G	717	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;MQRankSum=-0.453;QD=11.03;ReadPosRankSum=1.679;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:81:750,81,0
chrIX	257638	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.59;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1401,153,0
chrIX	257809	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=21.17;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1494,162,0
chrIX	257823	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=19.33;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1193,132,0
chrIX	257945	.	T	C	2046	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.00;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2079,228,0
chrIX	258854	.	T	A	2745	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.804;QD=24.51;ReadPosRankSum=1.670;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2778,306,0
chrIX	259266	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.276;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.459;QD=21.86;ReadPosRankSum=-1.048;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1716,165,0
chrIX	259323	.	T	A	1712	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.95;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1745,189,0
chrIX	259533	.	C	T	1326	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.74;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1359,147,0
chrIX	259701	.	G	A	1612	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.42;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1645,177,0
chrIX	259794	.	T	C	1795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.696;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.253;QD=19.94;ReadPosRankSum=1.693;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1828,204,0
chrIX	259913	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.84;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1242,132,0
chrIX	259923	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=21.16;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1070,117,0
chrIX	260018	.	T	A	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;MQRankSum=-0.559;QD=19.29;ReadPosRankSum=1.621;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1229,135,0
chrIX	260022	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=19.35;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1252,138,0
chrIX	260120	.	G	A	2276	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=23.96;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2309,255,0
chrIX	260167	.	G	A	2021	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.84;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2054,222,0
chrIX	260232	.	C	T	2177	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.68;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2210,234,0
chrIX	260247	.	A	C	2133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.929;DP=99;Dels=0.00;FS=5.459;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=1.439;QD=21.55;ReadPosRankSum=2.623;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:3,96:99:99:2166,240,0
chrIX	260320	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.192;QD=18.62;ReadPosRankSum=1.689;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1541,171,0
chrIX	260331	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=16.73;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1422,156,0
chrIX	260350	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;QD=15.26;SB=-1.301e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1544,162,0
chrIX	260376	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=11.23;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1134,120,0
chrIX	260388	.	C	T	1157	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=13.15;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1190,129,0
chrIX	260414	.	T	A	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=0.041;QD=14.93;ReadPosRankSum=2.369;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:2,89:92:99:1407,159,0
chrIX	260769	.	T	C	1440	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.00;FS=12.494;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.159;QD=20.28;ReadPosRankSum=2.309;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1473,159,0
chrIX	261061	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.36;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1229,132,0
chrIX	261155	.	C	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.80;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1401,153,0
chrIX	261261	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=24.55;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2120,234,0
chrIX	261281	.	G	A	2196	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.40;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2229,240,0
chrIX	261499	.	A	G	1102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=63;Dels=0.00;FS=2.609;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=1.196;QD=17.49;ReadPosRankSum=2.293;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1135,126,0
chrIX	262330	.	C	G	1092	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.00;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1125,123,0
chrIX	262342	.	C	A	957	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=16.50;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:990,111,0
chrIX	262363	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.68;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1398,150,0
chrIX	262483	.	A	G	1623	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.79;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1656,183,0
chrIX	262504	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.31;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1495,165,0
chrIX	262630	.	T	A	1439	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.824;QD=23.21;ReadPosRankSum=1.675;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1472,159,0
chrIX	263203	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2329;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.92;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1560,177,0
chrIX	263455	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.67;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1170,132,0
chrIX	263605	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.547;QD=20.41;ReadPosRankSum=1.670;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1176,129,0
chrIX	263668	.	T	C	1716	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.29;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1749,192,0
chrIX	263753	.	C	T	2049	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.39;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2082,222,0
chrIX	263911	.	A	G	1346	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.07;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1379,153,0
chrIX	264562	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1657,189,0
chrIX	264616	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.92;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1660,180,0
chrIX	264685	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.69;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1435,159,0
chrIX	265082	.	G	A	2795	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.96;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2828,300,0
chrIX	265265	.	C	A	2406	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.22;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2439,273,0
chrIX	265283	.	A	G	2482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.0935;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.107;QD=21.58;ReadPosRankSum=1.701;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,112:115:99:2515,279,0
chrIX	265394	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1923,213,0
chrIX	265508	.	C	T	1852	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.05;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1885,207,0
chrIX	265732	.	A	C	1690	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.95;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1723,189,0
chrIX	265808	.	C	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1710,183,0
chrIX	266696	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=16.10;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1289,138,0
chrIX	266717	.	A	G	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=10.226;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.262;QD=15.04;ReadPosRankSum=2.388;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1236,138,0
chrIX	266720	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=15.60;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1250,135,0
chrIX	266855	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:76:99:1577,177,0
chrIX	266933	.	C	T	1441	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.59;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1474,159,0
chrIX	267287	.	A	G	966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.334;QD=16.95;ReadPosRankSum=1.672;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:999,114,0
chrIX	267596	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.33;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1142,126,0
chrIX	267732	.	C	T	783	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.64;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,40:42:87:816,87,0
chrIX	267764	.	A	G	970	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.0637;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=16.17;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1003,114,0
chrIX	268176	.	G	A	1063	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.04;FS=0.000;HaplotypeScore=47.3611;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=13.46;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1096,117,0
chrIX	268278	.	C	G	1579	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=12.9879;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.26;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1612,177,0
chrIX	268466	.	G	T	1079	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.29;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1112,123,0
chrIX	268483	.	G	C	873	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.19;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:906,102,0
chrIX	268579	.	A	G	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=1.215;QD=18.43;ReadPosRankSum=1.681;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1268,141,0
chrIX	268690	.	A	G	1173	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.33;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1206,138,0
chrIX	269349	.	C	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5397;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.75;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1453,162,0
chrIX	269580	.	T	C	2139	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.133;QD=20.57;ReadPosRankSum=1.699;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2172,240,0
chrIX	269763	.	C	G	2188	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.3989;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.64;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2221,252,0
chrIX	269976	.	T	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.00;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1986,225,0
chrIX	270090	.	A	G	2273	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.601;QD=21.44;ReadPosRankSum=1.634;SB=-1.392e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2306,255,0
chrIX	270435	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.047;QD=18.89;ReadPosRankSum=1.656;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,90:93:99:1790,198,0
chrIX	270588	.	C	A	2224	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.12;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2257,255,0
chrIX	270694	.	T	A	2429	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=16.87;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:2462,299,0
chrIX	270699	.	C	T	2996	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.87;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3029,330,0
chrIX	271036	.	C	T	3049	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.03;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,143:145:99:3082,324,0
chrIX	271273	.	T	C	1228	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=17.80;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1261,141,0
chrIX	271280	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.628;DP=70;Dels=0.00;FS=2.598;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.060;QD=14.81;ReadPosRankSum=2.897;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:3,65:70:99:1070,117,0
chrIX	271526	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.3869;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.33;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1541,165,0
chrIX	271556	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.16;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1623,183,0
chrIX	271808	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=22.34;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1798,204,0
chrIX	271960	.	A	G	1732	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3609;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.260;QD=20.87;ReadPosRankSum=1.646;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:83:99:1765,201,0
chrIX	272369	.	C	T	2247	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.43;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2280,243,0
chrIX	273085	.	T	A	1778	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.51;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1811,198,0
chrIX	273183	.	A	C	1892	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.26;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1925,210,0
chrIX	273421	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.22;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1282,138,0
chrIX	273624	.	C	T	3372.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.10;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3372,363,0
chrIX	274009	.	G	A	2734	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8909;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.41;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,157:157:99:2767,303,0
chrIX	274174	.	A	G	645	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.24;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:75:678,75,0
chrIX	274203	.	T	C	712	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.94;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:81:745,81,0
chrIX	274263	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.124;QD=20.65;ReadPosRankSum=1.670;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1210,132,0
chrIX	274389	.	G	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8791;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.83;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1677,177,0
chrIX	274516	.	C	T	1703	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.02;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1736,186,0
chrIX	274807	.	G	A	645	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=12.40;SB=-2.570e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:72:678,72,0
chrIX	274972	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=16.47;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1301,144,0
chrIX	275372	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.00;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1189,135,0
chrIX	275849	.	G	A	1749	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.22;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1782,198,0
chrIX	276104	.	T	C	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.616;QD=20.57;ReadPosRankSum=1.655;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1905,213,0
chrIX	276311	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.40;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1701,186,0
chrIX	276932	.	C	T	1640	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.03;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1673,180,0
chrIX	277232	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.16;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1353,147,0
chrIX	277347	.	T	C	936	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.91;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:969,105,0
chrIX	277526	.	T	C	405	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=24.3666;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=13.97;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:48:438,48,0
chrIX	277761	.	A	C	844	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.64;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:877,99,0
chrIX	278046	.	T	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.95;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1200,132,0
chrIX	278070	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=18.60;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1056,117,0
chrIX	278371	.	G	A	1879	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.74;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1912,204,0
chrIX	278584	.	G	A	2101	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.22;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2134,240,0
chrIX	278878	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.66;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1979,213,0
chrIX	278890	.	A	G	1576	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-1.320;QD=18.54;ReadPosRankSum=1.650;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1609,174,0
chrIX	278998	.	G	A	1787	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.82;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1820,192,0
chrIX	279154	.	T	C	1477	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=0.024;QD=20.23;ReadPosRankSum=1.685;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1510,165,0
chrIX	279181	.	C	T	1505	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.81;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1538,165,0
chrIX	279199	.	C	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.51;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1451,156,0
chrIX	279526	.	T	C	2164	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3788;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.02;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2197,243,0
chrIX	279602	.	A	G	2339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=7.980;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.334;QD=21.86;ReadPosRankSum=2.404;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2372,264,0
chrIX	279700	.	T	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1702,186,0
chrIX	280264	.	C	T	1116	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.30;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1149,126,0
chrIX	280670	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.13;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1238,138,0
chrIX	280823	.	T	C	2126	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.87;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2159,240,0
chrIX	280877	.	A	G	1748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.951;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.067;QD=22.70;ReadPosRankSum=1.687;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1781,198,0
chrIX	281795	.	T	C	1051	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.21;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1084,120,0
chrIX	281888	.	A	G	1809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=82;Dels=0.00;FS=5.159;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.887;QD=22.06;ReadPosRankSum=1.690;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1842,210,0
chrIX	282067	.	A	G	876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=4.881;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.520;QD=21.90;ReadPosRankSum=1.646;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:99:909,99,0
chrIX	282578	.	A	G	988	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=-1.444;QD=20.16;ReadPosRankSum=1.660;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:1021,111,0
chrIX	282798	.	A	G	1611	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.35;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1644,180,0
chrIX	283497	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=18.59;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1409,156,0
chrIX	283728	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.81;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1103,117,0
chrIX	283758	.	T	A	1300	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.06;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1333,147,0
chrIX	283774	.	T	C	1306	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.327;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.466;QD=20.09;ReadPosRankSum=1.679;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1339,147,0
chrIX	283818	.	G	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.32;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1717,183,0
chrIX	283964	.	G	C	1146	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.46;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,53:56:99:1179,132,0
chrIX	284052	.	C	T	1671	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.63;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1704,180,0
chrIX	284073	.	A	T	1522	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.51;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1555,165,0
chrIX	284092	.	A	G	1588	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.4908;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.13;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1621,180,0
chrIX	284178	.	G	A	1609	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.86;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1642,186,0
chrIX	284253	.	C	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.61;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1481,162,0
chrIX	284273	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=71;Dels=0.00;FS=2.605;HaplotypeScore=3.4207;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.435;QD=18.59;ReadPosRankSum=2.842;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:3,67:71:99:1353,150,0
chrIX	284292	.	G	A	1570	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5028;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=18.92;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1603,171,0
chrIX	284643	.	C	T	2871	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.27;SB=-1.788e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2904,312,0
chrIX	284758	.	G	A	3165	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=23.44;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3198,351,0
chrIX	284764	.	G	A	2963	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.01;SB=-1.413e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:2996,336,0
chrIX	284955	.	C	T	2972	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.86;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:3005,324,0
chrIX	285060	.	T	A	2606	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.52;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2639,285,0
chrIX	285322	.	G	A	1728	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.19;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,92:95:99:1761,186,0
chrIX	285324	.	A	G	1741	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=4.816;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.518;QD=17.95;ReadPosRankSum=1.696;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1774,192,0
chrIX	285394	.	C	G	2269	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2834;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.61;SB=-1.370e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2302,252,0
chrIX	285513	.	G	A	2435	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.11;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2468,273,0
chrIX	285554	.	A	G	2096	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.141;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-0.497;QD=20.55;ReadPosRankSum=1.698;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2129,237,0
chrIX	285783	.	G	A	1598	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3509;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.75;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1631,183,0
chrIX	285890	.	T	G	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.527;DP=95;Dels=0.00;FS=151.417;HaplotypeScore=8.8718;MLEAC=1;MLEAF=0.500;MQ=53.50;MQ0=0;MQRankSum=-0.012;QD=0.45;ReadPosRankSum=-3.361;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,28:95:73:73,0,963
chrIX	285920	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=15.49;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1210,132,0
chrIX	285923	.	C	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=14.34;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1137,126,0
chrIX	286177	.	G	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=17.89;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1446,156,0
chrIX	286192	.	C	G	1237	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.95;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1270,141,0
chrIX	286206	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=14.44;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1203,132,0
chrIX	286346	.	G	A	1401	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=16.68;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1434,159,0
chrIX	286696	.	G	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.99;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1506,159,0
chrIX	286810	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.97;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1329,141,0
chrIX	286869	.	C	T	2156	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.78;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2189,231,0
chrIX	287429	.	A	G	2402	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.3390;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.64;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2435,267,0
chrIX	287531	.	T	C	2688	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.6221;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.145;QD=20.52;ReadPosRankSum=0.833;SB=-1.692e+03	GT:AD:DP:GQ:PL	1/1:1,130:131:99:2721,303,0
chrIX	287590	.	T	C	2506	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.5053;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.71;SB=-1.463e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2539,279,0
chrIX	287623	.	C	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.4517;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.71;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1876,201,0
chrIX	287904	.	T	C	2061	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.61;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2094,228,0
chrIX	288084	.	C	T	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=94;Dels=0.00;FS=3.203;HaplotypeScore=7.1736;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.657;QD=20.82;ReadPosRankSum=1.582;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1990,213,0
chrIX	288102	.	C	T	1941	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.81;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1974,216,0
chrIX	288210	.	C	G	1436	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.43;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1469,162,0
chrIX	288375	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1691;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.02;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1883,204,0
chrIX	288678	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.63;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1430,153,0
chrIX	288825	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.23;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1085,123,0
chrIX	288940	.	C	T	1197	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.62;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1230,135,0
chrIX	289043	.	C	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=40.3279;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.53;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1092,120,0
chrIX	289127	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.09;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1083,114,0
chrIX	289162	.	T	A	940	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=17.09;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:973,105,0
chrIX	289409	.	G	A	2187	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.57;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2220,240,0
chrIX	289540	.	G	A	1187	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.27;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1220,132,0
chrIX	290108	.	G	C	2220	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.42;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2253,246,0
chrIX	290288	.	G	A	3400.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=7.5263;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.29;SB=-1.851e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3400,363,0
chrIX	290536	.	C	T	2176	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.54;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2209,234,0
chrIX	290668	.	A	G	1007	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=15.0966;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.07;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1040,117,0
chrIX	290887	.	G	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.69;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1291,141,0
chrIX	290902	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.8801;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.02;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1376,150,0
chrIX	290977	.	G	A	1061	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1094,117,0
chrIX	291059	.	G	A	1211	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.53;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1244,132,0
chrIX	291169	.	C	T	1341	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.89;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1374,153,0
chrIX	291313	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.39;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1332,144,0
chrIX	291981	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.92;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1121,123,0
chrIX	291982	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.98;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1124,123,0
chrIX	292055	.	C	T	787	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.9384;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=15.13;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:90:820,90,0
chrIX	292071	.	G	A	681	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=13.90;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:78:714,78,0
chrIX	292156	.	C	A	787	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.74;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:820,93,0
chrIX	292307	.	G	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=20.53;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1080,117,0
chrIX	292346	.	T	C	875	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=16.20;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:908,102,0
chrIX	292353	.	A	C	945	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=16.29;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:978,111,0
chrIX	292364	.	T	C	918	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=14.34;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:951,111,0
chrIX	292383	.	G	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=17.28;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1536,168,0
chrIX	292755	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.02;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=13.45;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1432,156,0
chrIX	292764	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9641;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=15.18;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1642,180,0
chrIX	292870	.	A	G	2258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=117;Dels=0.00;FS=5.675;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.383;QD=19.30;ReadPosRankSum=2.940;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:3,113:117:99:2291,252,0
chrIX	293005	.	C	T	2040	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2073,222,0
chrIX	293205	.	G	A	2682	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.12;SB=-1.538e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2715,297,0
chrIX	293768	.	A	G	1672	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1705,186,0
chrIX	294090	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.11;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2111,225,0
chrIX	295080	.	A	G	1804	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.84;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1837,198,0
chrIX	295240	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.60;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1601,177,0
chrIX	295371	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=18.14;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1539,177,0
chrIX	295422	.	C	T	1492	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.16;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1525,165,0
chrIX	295898	.	T	C	2436	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=87.4188;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=23.20;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2469,276,0
chrIX	295934	.	T	C	2374	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.83;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2407,270,0
chrIX	296034	.	A	G	2085	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.13;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,112:115:99:2118,243,0
chrIX	296101	.	G	A	1797	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.75;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1830,198,0
chrIX	296155	.	T	C	1942	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.98;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1975,216,0
chrIX	296216	.	C	G	1876	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.17;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1909,213,0
chrIX	296225	.	G	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.17;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1909,204,0
chrIX	296453	.	T	A	1501	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.09;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1534,165,0
chrIX	296620	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.22;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1610,177,0
chrIX	296749	.	G	A	2058	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=14.5403;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.71;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,107:110:99:2091,234,0
chrIX	297148	.	G	A	2079	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.4386;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.25;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2112,234,0
chrIX	298018	.	A	T	2090	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.75;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2123,231,0
chrIX	298077	.	G	A	1967	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.38;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2000,213,0
chrIX	298096	.	G	A	1783	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.6777;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=19.17;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1816,201,0
chrIX	298147	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=16.80;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1579,174,0
chrIX	298156	.	A	G	1377	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=16.01;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1410,159,0
chrIX	298168	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=16.51;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1552,165,0
chrIX	298176	.	G	A	1761	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=16.46;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:1794,198,0
chrIX	298219	.	C	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.90;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1913,210,0
chrIX	298405	.	C	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.47;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1707,192,0
chrIX	298438	.	G	C	1850	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.33;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1883,207,0
chrIX	298465	.	C	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.45;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1749,186,0
chrIX	298867	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.58;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1482,159,0
chrIX	298900	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.6086;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.67;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1447,153,0
chrIX	299044	.	T	C	1739	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=15.95;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1772,198,0
chrIX	299047	.	G	A	1730	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=15.59;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1763,192,0
chrIX	299287	.	T	A	2043	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.70;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2076,222,0
chrIX	299898	.	T	G	153.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.919;DP=49;Dels=0.00;FS=110.878;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=0.946;QD=3.12;ReadPosRankSum=-5.625;SB=-2.684e+00	GT:AD:DP:GQ:PL	0/1:29,20:49:99:183,0,503
chrIX	300655	.	T	C	820.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;DP=118;Dels=0.00;FS=88.876;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=45.35;MQ0=0;MQRankSum=-7.460;QD=6.95;ReadPosRankSum=-1.235;SB=-1.290e+02	GT:AD:DP:GQ:PL	0/1:59,58:118:99:850,0,1226
chrIX	300677	.	C	T	674.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;DP=111;Dels=0.00;FS=87.735;HaplotypeScore=14.8499;MLEAC=1;MLEAF=0.500;MQ=42.44;MQ0=0;MQRankSum=-7.626;QD=6.07;ReadPosRankSum=-4.661;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:56,54:111:99:704,0,1081
chrIX	300680	.	G	A	607.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;DP=113;Dels=0.00;FS=97.228;HaplotypeScore=15.7440;MLEAC=1;MLEAF=0.500;MQ=42.47;MQ0=0;MQRankSum=-8.352;QD=5.37;ReadPosRankSum=-4.437;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:60,52:113:99:637,0,1148
chrIX	304231	.	C	G	1731	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.39;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1764,195,0
chrIX	304859	.	G	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.5488;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.53;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1701,183,0
chrIX	305776	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.773;QD=21.96;ReadPosRankSum=2.384;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1680,183,0
chrIX	306037	.	C	A	1297	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1330,144,0
chrIX	306523	.	A	G	1458	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.09;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1491,165,0
chrIX	308815	.	C	A	2471	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.1497;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.76;SB=-1.463e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2504,276,0
chrIX	308852	.	G	A	2571	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.90;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2604,294,0
chrIX	308908	.	G	A	2354	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=11.8190;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.65;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2387,264,0
chrIX	308976	.	T	C	1856	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.62;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1889,207,0
chrIX	309881	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.84;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,99:102:99:1853,201,0
chrIX	310160	.	T	C	1566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1459;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=0.706;QD=19.10;ReadPosRankSum=1.689;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1599,161,0
chrIX	310171	.	A	G	1593	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=18.96;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1626,183,0
chrIX	310223	.	A	G	1440	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=17.14;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1473,165,0
chrIX	310226	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=17.20;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1564,174,0
chrIX	310286	.	G	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.19;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1507,162,0
chrIX	310412	.	G	C	1043	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.68;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1076,120,0
chrIX	310533	.	G	A	864	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=12.17;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:96:897,96,0
chrIX	310671	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.26;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1188,132,0
chrIX	310732	.	T	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.53;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1303,144,0
chrIX	310769	.	G	A	1398	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=21.18;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1431,156,0
chrIX	310815	.	G	C	1540	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.32;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1573,174,0
chrIX	310874	.	A	G	855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=3.297;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.111;QD=18.19;ReadPosRankSum=1.585;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:888,102,0
chrIX	310945	.	G	T	631	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=15.39;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:664,75,0
chrIX	311139	.	T	C	1168	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.331;DP=64;Dels=0.00;FS=3.041;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=1.215;QD=18.25;ReadPosRankSum=2.219;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1201,114,0
chrIX	311141	.	C	T	1245	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.45;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1278,138,0
chrIX	311143	.	G	A	1234	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.28;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1267,138,0
chrIX	311461	.	G	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.19;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1241,132,0
chrIX	311545	.	A	G	1351	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.47;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1384,153,0
chrIX	311578	.	C	G	1154	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=15.81;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1187,135,0
chrIX	311839	.	C	T	897	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.25;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:930,105,0
chrIX	313912	.	T	G	3198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=157;Dels=0.00;FS=13.279;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.975;QD=20.37;ReadPosRankSum=2.418;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:2,153:157:99:3231,354,0
chrIX	317443	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=1;QD=20.35;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1681,189,0
chrIX	318129	.	C	T	1733	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.87;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1766,192,0
chrIX	318187	.	G	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.86;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1608,174,0
chrIX	318288	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.17;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1725,186,0
chrIX	318368	.	A	G	1928	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.51;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:1961,219,0
chrIX	318694	.	T	A	1764	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.57;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1797,201,0
chrIX	319670	.	C	T	1745	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0882;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.76;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1778,192,0
chrIX	320609	.	T	C	769	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.76;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:802,87,0
chrIX	321421	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.56;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1588,174,0
chrIX	321451	.	G	A	1422	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.22;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1455,159,0
chrIX	322019	.	A	C	1364	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=4.649;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-0.445;QD=19.49;ReadPosRankSum=1.683;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1397,156,0
chrIX	322066	.	G	A	1294	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.57;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1327,147,0
chrIX	322202	.	T	C	2042	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=4.003;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=0.801;QD=21.96;ReadPosRankSum=1.695;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2075,228,0
chrIX	322437	.	C	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1328,144,0
chrIX	322476	.	C	T	1961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4765;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.438;QD=21.32;ReadPosRankSum=1.618;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1994,216,0
chrIX	322620	.	T	C	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=0.650;QD=19.52;ReadPosRankSum=1.689;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1614,180,0
chrIX	322623	.	T	C	1586	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.11;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1619,180,0
chrIX	323225	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1409,153,0
chrIX	323343	.	T	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.76;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1467,162,0
chrIX	323754	.	G	C	1596	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8420;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.46;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1629,180,0
chrIX	323883	.	A	G	2289	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2322,264,0
chrIX	324390	.	T	C	1868	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.713;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;MQRankSum=1.095;QD=21.23;ReadPosRankSum=1.613;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1901,210,0
chrIX	324408	.	C	G	1748	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=20.33;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1781,198,0
chrIX	324424	.	C	A	1490	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.91;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1523,165,0
chrIX	324521	.	A	C	886	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.02;MQ0=0;QD=17.72;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:99:919,99,0
chrIX	324536	.	G	A	859	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.181;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=33.35;MQ0=0;MQRankSum=1.012;QD=15.62;ReadPosRankSum=0.112;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,53:55:99:892,99,0
chrIX	324559	.	A	G	711	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;MQRankSum=-1.751;QD=15.46;ReadPosRankSum=2.343;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,44:46:84:744,84,0
chrIX	324573	.	T	C	697	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.74;MQ0=0;QD=15.49;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:81:730,81,0
chrIX	324597	.	C	T	587	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=12.76;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,44:46:66:620,66,0
chrIX	324627	.	G	T	527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=0.634;QD=12.55;ReadPosRankSum=-0.211;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:1,40:42:60:560,60,0
chrIX	324956	.	A	G	802	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=18.65;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:835,96,0
chrIX	324958	.	A	G	782	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=18.19;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:815,96,0
chrIX	324962	.	A	G	728	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=17.76;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:761,87,0
chrIX	324963	.	A	G	700	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;QD=17.07;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:733,81,0
chrIX	326195	.	C	G	1937	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.76;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1970,225,0
chrIX	326249	.	A	G	1773	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.109;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.387;QD=20.86;ReadPosRankSum=1.691;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1806,204,0
chrIX	326329	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.51;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1421,153,0
chrIX	326411	.	G	T	1649	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.14;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1682,186,0
chrIX	326540	.	A	G	1307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.777;QD=16.97;ReadPosRankSum=2.725;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1340,147,0
chrIX	326543	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-0.716;QD=16.36;ReadPosRankSum=2.906;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1260,138,0
chrIX	326669	.	G	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.03;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1835,195,0
chrIX	326724	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.76;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1411,150,0
chrIX	326889	.	T	C	1242	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.36;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1275,141,0
chrIX	327320	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.41;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1189,129,0
chrIX	327455	.	A	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.43;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1491,165,0
chrIX	328243	.	G	A	1976	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.98;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2009,228,0
chrIX	331210	.	A	G	1912	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.38;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1945,219,0
chrIX	331213	.	T	G	1902	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=16.83;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1935,216,0
chrIX	331270	.	A	G	1802	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.84;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1835,210,0
chrIX	332459	.	C	T	854	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8102;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.57;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:96:887,96,0
chrIX	333345	.	T	C	676	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=16.49;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:709,81,0
chrIX	333593	.	C	T	174.03	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=6.22;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:24:207,24,0
chrIX	333846	.	G	T	844	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=21.64;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:96:877,96,0
chrIX	333850	.	A	C	786	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.71;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,40:42:90:819,90,0
chrIX	333942	.	T	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=23.13;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1467,165,0
chrIX	334096	.	A	T	1112	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.65;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1145,123,0
chrIX	334200	.	A	T	1741	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.13;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1774,195,0
chrIX	334281	.	T	C	1708	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=17.98;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1741,195,0
chrIX	334344	.	T	C	540.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;DP=79;Dels=0.00;FS=0.863;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=45.22;MQ0=0;MQRankSum=1.093;QD=6.84;ReadPosRankSum=1.839;SB=-2.710e+02	GT:AD:DP:GQ:PL	0/1:40,39:79:96:570,0,96
chrIX	334360	.	T	G	135.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.708;DP=81;Dels=0.00;FS=0.942;HaplotypeScore=8.9516;MLEAC=1;MLEAF=0.500;MQ=45.64;MQ0=0;MQRankSum=-3.661;QD=1.67;ReadPosRankSum=-3.828;SB=-1.680e+02	GT:AD:DP:GQ:PL	0/1:58,23:81:99:165,0,584
chrIX	334688	.	A	G	2085	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3375;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=24.82;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2118,231,0
chrIX	334728	.	C	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.31;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1172,132,0
chrIX	334815	.	T	C	2361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=16.4474;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=0.599;QD=21.66;ReadPosRankSum=1.700;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2394,267,0
chrIX	334919	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.42;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1490,165,0
chrIX	335001	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.11;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1485,162,0
chrIX	335022	.	T	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=16.62;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1263,135,0
chrIX	335035	.	C	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=15.04;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1311,141,0
chrIX	335154	.	C	T	1745	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.3000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.61;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1778,192,0
chrIX	335581	.	A	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.49;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1690,180,0
chrIX	335817	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=17.90;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:928,102,0
chrIX	335838	.	G	A	1165	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.79;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1198,129,0
chrIX	336156	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=61;Dels=0.00;FS=2.908;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.144;QD=22.15;ReadPosRankSum=2.368;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:2,58:61:99:1384,153,0
chrIX	336180	.	C	G	1659	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.37;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1692,183,0
chrIX	336223	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.02;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1464,162,0
chrIX	336426	.	T	C	1117	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.0118;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.45;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1150,126,0
chrIX	337052	.	A	G	2335	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.2532;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.04;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2368,261,0
chrIX	337180	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.6097;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.42;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1891,204,0
chrIX	337219	.	T	G	1239	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=67.9346;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=16.09;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1272,144,0
chrIX	337321	.	C	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.7706;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.04;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1855,207,0
chrIX	337519	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.17;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1364,147,0
chrIX	337905	.	T	A	1309	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.82;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1342,144,0
chrIX	337948	.	T	C	1159	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.64;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1192,132,0
chrIX	337953	.	A	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.07;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1120,126,0
chrIX	338050	.	A	G	1550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.498;QD=20.67;ReadPosRankSum=1.685;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1583,171,0
chrIX	338567	.	G	A	1165	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.84;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1198,132,0
chrIX	338670	.	G	A	990	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.62;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1023,108,0
chrIX	339251	.	G	T	24.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;DP=40;Dels=0.00;FS=56.412;HaplotypeScore=8.1917;MLEAC=1;MLEAF=0.500;MQ=54.16;MQ0=0;MQRankSum=0.402;QD=0.60;ReadPosRankSum=-3.727;SB=-6.498e-03	GT:AD:DP:GQ:PL	0/1:22,16:40:54:54,0,158
chrIX	339595	.	T	C	2073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.4977;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.658;QD=20.73;ReadPosRankSum=1.697;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2106,234,0
chrIX	340927	.	A	C	1248	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1281,141,0
chrIX	341514	.	T	G	857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;MQRankSum=-0.034;QD=16.80;ReadPosRankSum=1.664;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:890,99,0
chrIX	341515	.	G	C	859	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.52;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:892,99,0
chrIX	341595	.	C	A	2503	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.15;SB=-1.474e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2536,276,0
chrIX	341662	.	C	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.13;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1781,189,0
chrIX	341686	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.692;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.562;QD=20.49;ReadPosRankSum=3.692;SB=-1.580e+02	GT:AD:DP:GQ:PL	1/1:5,64:69:99:1447,159,0
chrIX	341700	.	G	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.38;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1893,210,0
chrIX	341777	.	A	C	2019	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.48;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2052,231,0
chrIX	341828	.	G	A	1006	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.8295;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.96;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1039,114,0
chrIX	341838	.	A	G	941	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=16.80;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:974,108,0
chrIX	341987	.	C	T	4753.01	PASS	AC=2;AF=1.00;AN=2;DP=203;Dels=0.00;FS=0.000;HaplotypeScore=16.7358;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.41;SB=-2.566e+03	GT:AD:DP:GQ:PL	1/1:0,203:203:99:4753,516,0
chrIX	342151	.	C	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.52;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1750,186,0
chrIX	342194	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.48;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1835,204,0
chrIX	342264	.	T	G	3276.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.99;SB=-1.697e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3276,369,0
chrIX	343092	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.93;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1127,120,0
chrIX	343093	.	G	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.07;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1135,123,0
chrIX	343172	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.877;QD=20.08;ReadPosRankSum=1.687;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1579,174,0
chrIX	343351	.	G	A	2985	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.95;SB=-1.570e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3018,321,0
chrIX	343874	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.085;QD=21.02;ReadPosRankSum=1.675;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1336,144,0
chrIX	344094	.	C	T	1979	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.40;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2012,219,0
chrIX	344220	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.27;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1553,168,0
chrIX	344292	.	T	G	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.993;QD=22.40;ReadPosRankSum=1.686;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1713,195,0
chrIX	344547	.	C	T	1087	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.12;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1120,123,0
chrIX	344556	.	G	A	1084	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8907;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.37;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1117,120,0
chrIX	344691	.	C	T	1473	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.99;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1506,162,0
chrIX	344740	.	C	A	1841	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.41;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1874,201,0
chrIX	345192	.	A	C	1576	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=82;Dels=0.00;FS=2.915;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.959;QD=19.22;ReadPosRankSum=2.389;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:2,79:82:99:1609,177,0
chrIX	345247	.	A	C	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.435;QD=22.07;ReadPosRankSum=1.633;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1600,180,0
chrIX	345626	.	T	C	1631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.188;QD=19.42;ReadPosRankSum=1.649;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1664,183,0
chrIX	345656	.	A	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.26;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1532,168,0
chrIX	345745	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.73;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1204,132,0
chrIX	345804	.	A	C	878	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=16.26;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:911,102,0
chrIX	345871	.	T	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.57;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1568,171,0
chrIX	345992	.	G	A	1044	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.64;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1077,123,0
chrIX	346155	.	A	T	1021	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1054,114,0
chrIX	346599	.	G	A	1593	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.09;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1626,177,0
chrIX	346766	.	A	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.93;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1163,129,0
chrIX	346859	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.36;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1336,147,0
chrIX	346999	.	C	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.52;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1408,159,0
chrIX	347117	.	A	G	1897	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.32;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1930,210,0
chrIX	347165	.	A	G	2013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=9.155;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.246;QD=22.87;ReadPosRankSum=2.394;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:2046,228,0
chrIX	347270	.	A	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.90;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1084,117,0
chrIX	347866	.	T	C	3547.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=158;Dels=0.00;FS=2.950;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=0.104;QD=22.45;ReadPosRankSum=2.354;SB=-1.788e+03	GT:AD:DP:GQ:PL	1/1:2,152:158:99:3547,387,0
chrIX	348431	.	T	C	1622	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.53;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1655,183,0
chrIX	348722	.	T	C	1455	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.40;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1488,162,0
chrIX	348726	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.68;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1371,147,0
chrIX	348738	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.73;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1288,141,0
chrIX	348957	.	A	G	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=73;Dels=0.01;FS=9.182;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.504;QD=18.44;ReadPosRankSum=2.346;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1379,150,0
chrIX	348958	.	T	C	1378	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.69;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1411,156,0
chrIX	349226	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.52;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1432,156,0
chrIX	349419	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.77;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1217,132,0
chrIX	349460	.	T	C	952	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:985,108,0
chrIX	349499	.	C	T	1190	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1223,132,0
chrIX	349907	.	C	T	521	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.61;SB=-6.527e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:60:554,60,0
chrIX	349963	.	T	A	528	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=13.54;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:60:561,60,0
chrIX	350005	.	A	G	496	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=13.78;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:57:529,57,0
chrIX	350012	.	C	T	487	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=15.22;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:54:520,54,0
chrIX	350021	.	G	A	411	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.12;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:48:444,48,0
chrIX	350024	.	C	T	412	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.73;SB=-6.653e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:48:445,48,0
chrIX	350033	.	A	G	164.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.767;DP=25;Dels=0.00;FS=24.123;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;MQRankSum=-2.711;QD=6.56;ReadPosRankSum=3.556;SB=-2.126e+00	GT:AD:DP:GQ:PL	1/1:14,11:25:5:195,5,0
chrIX	350044	.	T	C	367	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:45:400,45,0
chrIX	350094	.	A	T	679	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.90;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:78:712,78,0
chrIX	350135	.	A	G	574	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.96;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:69:607,69,0
chrIX	350183	.	T	A	308	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.00;SB=-7.065e-03	GT:AD:DP:GQ:PL	1/1:0,14:14:39:341,39,0
chrIX	350189	.	G	C	245	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.42;SB=-1.085e-02	GT:AD:DP:GQ:PL	1/1:0,12:12:30:278,30,0
chrIX	350262	.	C	A	159.06	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.67;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:21:192,21,0
chrIX	350470	.	G	A	527	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=13.17;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:60:560,60,0
chrIX	350513	.	A	G	705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.400;QD=18.08;ReadPosRankSum=1.644;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:81:738,81,0
chrIX	350705	.	C	G	800	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.86;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,34:35:93:833,93,0
chrIX	350729	.	T	C	694	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.93;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:81:727,81,0
chrIX	351040	.	C	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.75;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1589,168,0
chrIX	351362	.	C	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.11;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1521,165,0
chrIX	351455	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1144,126,0
chrIX	351536	.	T	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.50;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1624,183,0
chrIX	351593	.	T	C	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.082;QD=21.60;ReadPosRankSum=1.677;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1394,156,0
chrIX	351895	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.08;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1490,165,0
chrIX	352067	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=17.15;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1285,141,0
chrIX	352490	.	A	G	1427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.274;DP=69;Dels=0.00;FS=4.175;HaplotypeScore=9.6691;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.866;QD=20.68;ReadPosRankSum=0.408;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1460,165,0
chrIX	352871	.	A	G	2846	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.95;SB=-1.570e+03	GT:AD:DP:GQ:PL	1/1:0,121:124:99:2879,312,0
chrIX	353530	.	T	C	1554	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.95;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1587,177,0
chrIX	353849	.	A	G	1847	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=4.260;HaplotypeScore=3.4477;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.953;QD=23.09;ReadPosRankSum=1.689;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1880,210,0
chrIX	354242	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=4.046;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.627;QD=20.93;ReadPosRankSum=1.680;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1435,159,0
chrIX	354377	.	A	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.82;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1233,135,0
chrIX	354711	.	G	A	1436	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.81;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1469,162,0
chrIX	354832	.	G	A	1198	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.19;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1231,132,0
chrIX	354945	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3282;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.69;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1417,156,0
chrIX	355463	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.32;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:75:691,75,0
chrIX	355578	.	T	G	1962	filter	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.80;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1995,216,0
chrIX	355596	.	T	C	1476	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.95;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1509,180,0
chrIX	355640	.	A	C	623	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-1.509;QD=20.10;ReadPosRankSum=1.621;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:1,30:31:72:656,72,0
chrIX	355710	.	C	T	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=3.37;SB=-2.326e+01	GT:AD:DP:GQ:PL	1/1:0,5:5:6:48,6,0
chrIX	356037	.	C	T	704	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.71;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:737,78,0
chrIX	356686	.	G	A	1936	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.51;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1969,222,0
chrIX	356958	.	G	A	2103	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.86;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2136,231,0
chrIX	357174	.	G	A	1380	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.79;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1413,153,0
chrIX	357284	.	A	T	2550	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.08;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2583,282,0
chrIX	357298	.	G	A	3142	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.0160;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.97;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,141:143:99:3175,345,0
chrIX	357385	.	G	A	1823	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.45;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1856,207,0
chrIX	357418	.	A	G	1277	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.40;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1310,144,0
chrIX	357775	.	C	G	955	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.76;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:988,111,0
chrIX	357800	.	C	T	881	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.35;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:96:914,96,0
chrIX	357803	.	T	A	822	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.12;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:855,93,0
chrIX	357862	.	A	G	656	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=16.82;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:75:689,75,0
chrIX	357955	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.97;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1611,180,0
chrIX	358029	.	C	A	1165	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.20;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1198,132,0
chrIX	358276	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.627;QD=22.20;ReadPosRankSum=2.254;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:99:1454,159,0
chrIX	358450	.	A	G	1197	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.37;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1230,138,0
chrIX	358570	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.66;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1438,159,0
chrIX	358980	.	C	T	1322	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.16;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1355,147,0
chrIX	359077	.	G	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.35;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1042,114,0
chrIX	359494	.	C	T	1178	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1494;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=15.10;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1211,135,0
chrIX	359599	.	A	G	1829	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.55;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1862,213,0
chrIX	359743	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.87;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1598,183,0
chrIX	359744	.	G	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.86;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1577,171,0
chrIX	360287	.	A	G	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.029;QD=20.00;ReadPosRankSum=1.624;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1313,150,0
chrIX	360413	.	C	A	1789	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.80;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1822,195,0
chrIX	360579	.	T	G	825	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=15.87;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:858,99,0
chrIX	360722	.	T	G	1511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.1087;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.559;QD=19.37;ReadPosRankSum=1.377;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1544,171,0
chrIX	360812	.	T	C	2952	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=8.7339;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.03;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2985,330,0
chrIX	360959	.	C	T	951	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.02;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:984,108,0
chrIX	360983	.	A	G	1079	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=18.29;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1112,123,0
chrIX	361181	.	A	G	1866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=101;Dels=0.00;FS=2.600;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.710;QD=18.48;ReadPosRankSum=2.611;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:3,98:101:99:1899,213,0
chrIX	361254	.	G	C	1543	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.04;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1576,177,0
chrIX	361353	.	G	A	1240	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.00;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1273,144,0
chrIX	361354	.	A	G	1256	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=20.26;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1289,144,0
chrIX	361360	.	C	A	1340	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.00;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1373,150,0
chrIX	361467	.	C	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=16.97;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1221,138,0
chrIX	361469	.	T	C	1198	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.62;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1231,138,0
chrIX	361543	.	A	C	984	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=16.13;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1017,114,0
chrIX	361688	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.51;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1162,126,0
chrIX	361957	.	G	T	1319	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.69;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1352,150,0
chrIX	362340	.	C	A	529	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.06;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:60:562,60,0
chrIX	362381	.	A	C	1474	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.33;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1507,168,0
chrIX	362523	.	G	A	3342.01	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.94;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:3342,360,0
chrIX	362531	.	A	G	2802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.004;DP=127;Dels=0.00;FS=31.789;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.223;QD=22.06;ReadPosRankSum=4.118;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:6,120:127:99:2835,318,0
chrIX	362658	.	A	C	1760	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1793,195,0
chrIX	363069	.	G	A	574	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=47.3589;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=18.52;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:66:607,66,0
chrIX	363854	.	T	C	3153	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=12.717;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.148;QD=22.36;ReadPosRankSum=2.415;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:2,139:141:99:3186,351,0
chrIX	364352	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1545,168,0
chrIX	364426	.	T	C	1476	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1509,168,0
chrIX	365655	.	A	T	4034.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.165;QD=22.54;ReadPosRankSum=1.673;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:1,178:179:99:4034,438,0
chrIX	365725	.	G	A	2864	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.9244;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.55;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2897,309,0
chrIX	366567	.	C	T	50.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;DP=61;Dels=0.00;FS=6.437;HaplotypeScore=4.1336;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=-0.830;QD=0.82;ReadPosRankSum=-2.613;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,14:61:80:80,0,891
chrIX	366603	.	C	T	162.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;DP=50;Dels=0.00;FS=6.221;HaplotypeScore=6.7354;MLEAC=1;MLEAF=0.500;MQ=56.74;MQ0=0;MQRankSum=0.881;QD=3.24;ReadPosRankSum=-4.239;SB=-1.200e+02	GT:AD:DP:GQ:PL	0/1:33,17:50:99:192,0,554
chrIX	366668	.	C	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1142,123,0
chrIX	369452	.	C	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.72;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1684,180,0
chrIX	369589	.	G	A	2007	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.27;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2040,228,0
chrIX	370336	.	C	G	2324	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.01;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2357,258,0
chrIX	370388	.	G	A	2225	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=23.18;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2258,234,0
chrIX	370396	.	T	G	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=88;Dels=0.00;FS=3.112;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.322;QD=20.58;ReadPosRankSum=1.692;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1844,198,0
chrIX	372078	.	C	G	1719	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.92;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1752,192,0
chrIX	372987	.	G	C	1270	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.16;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1303,144,0
chrIX	373876	.	G	A	1179	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.14;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1212,132,0
chrIX	374562	.	G	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.49;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1568,171,0
chrIX	374576	.	A	G	1719	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.22;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1752,195,0
chrIX	374674	.	G	A	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.357;DP=86;Dels=0.00;FS=3.063;HaplotypeScore=8.0014;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.605;QD=17.63;ReadPosRankSum=0.730;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,83:86:99:1549,177,0
chrIX	374761	.	C	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.34;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1317,147,0
chrIX	374861	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.99;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1552,168,0
chrIX	374922	.	A	G	1489	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.38;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1522,174,0
chrIX	374943	.	C	G	1710	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.00;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1743,195,0
chrIX	375017	.	G	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4411;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.11;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1772,198,0
chrIX	375279	.	C	A	2862	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.68;SB=-1.594e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2895,321,0
chrIX	375421	.	T	C	926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=4.114;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.106;QD=18.90;ReadPosRankSum=1.591;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:959,105,0
chrIX	375595	.	G	A	1371	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.04;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1404,153,0
chrIX	375832	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.18;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1447,156,0
chrIX	375913	.	T	C	1008	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=17.68;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1041,114,0
chrIX	375934	.	T	C	821	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=16.42;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:96:854,96,0
chrIX	376391	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.6510;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.47;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1746,192,0
chrIX	376792	.	C	T	2038	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.23;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2071,231,0
chrIX	377168	.	A	T	3990.01	PASS	AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=13.8146;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.54;SB=-1.612e+03	GT:AD:DP:GQ:PL	1/1:0,177:177:99:3990,435,0
chrIX	377238	.	T	C	3921.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.618;DP=189;Dels=0.00;FS=11.331;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.549;QD=20.75;ReadPosRankSum=3.729;SB=-1.946e+03	GT:AD:DP:GQ:PL	1/1:5,179:189:99:3921,432,0
chrIX	377556	.	C	T	2165	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.35;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2198,243,0
chrIX	378064	.	G	A	776	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.5503;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.05;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:809,90,0
chrIX	378238	.	C	T	1576	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2846;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.22;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1609,174,0
chrIX	378462	.	C	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.39;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1466,159,0
chrIX	378858	.	G	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.30;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1259,135,0
chrIX	379276	.	A	C	1232	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.61;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1265,141,0
chrIX	379313	.	T	C	1121	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.3046;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.00;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1154,129,0
chrIX	379472	.	C	T	1797	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.39;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1830,198,0
chrIX	379493	.	C	G	2107	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.66;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2140,240,0
chrIX	379529	.	G	A	2002	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.55;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2035,216,0
chrIX	379942	.	A	C	1342	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=10.0730;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.89;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1375,150,0
chrIX	379944	.	G	C	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.424;HaplotypeScore=7.2528;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.652;QD=17.00;ReadPosRankSum=1.642;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1359,150,0
chrIX	380031	.	A	T	1262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=22.14;ReadPosRankSum=1.672;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1295,141,0
chrIX	380306	.	C	T	1372	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.06;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1405,153,0
chrIX	380666	.	A	G	1008	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.33;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1041,114,0
chrIX	380768	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.33;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1350,147,0
chrIX	380934	.	A	G	220	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=6.67;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:30:253,30,0
chrIX	380958	.	T	C	145.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=26.4089;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;MQRankSum=-1.213;QD=3.54;ReadPosRankSum=1.473;SB=-3.141e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:21:178,21,0
chrIX	380973	.	A	G	318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.00;FS=5.441;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;MQRankSum=0.495;QD=7.40;ReadPosRankSum=1.650;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:1,41:43:39:351,39,0
chrIX	380999	.	G	A	707	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=13.60;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:740,81,0
chrIX	381073	.	G	A	872	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.10;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:96:905,96,0
chrIX	381084	.	A	C	842	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.449;QD=15.59;ReadPosRankSum=-1.412;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:96:875,96,0
chrIX	381265	.	G	A	613	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=15.32;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:72:646,72,0
chrIX	381277	.	T	C	850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=4.491;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;MQRankSum=-0.500;QD=18.89;ReadPosRankSum=1.655;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:96:883,96,0
chrIX	381442	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.22;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1217,135,0
chrIX	381445	.	A	C	1139	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=17.80;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1172,132,0
chrIX	381521	.	A	G	1038	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.21;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1071,120,0
chrIX	381525	.	C	G	1066	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.38;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1099,120,0
chrIX	381607	.	C	T	1207	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.18;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1240,132,0
chrIX	381696	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=24.70;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1194,135,0
chrIX	381823	.	A	C	1952	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.33;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1985,222,0
chrIX	381923	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=25.16;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1945,213,0
chrIX	382331	.	T	C	713	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=40.22;MQ0=0;QD=14.55;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:746,81,0
chrIX	382343	.	G	A	553	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=12.02;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:66:586,66,0
chrIX	382352	.	G	A	466	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=10.59;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:54:499,54,0
chrIX	382367	.	T	C	467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=6.232;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;MQRankSum=-0.990;QD=11.12;ReadPosRankSum=1.650;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:54:500,54,0
chrIX	382388	.	T	G	294	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=10.50;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:36:327,36,0
chrIX	382390	.	G	A	269	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=9.61;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:33:302,33,0
chrIX	382403	.	A	G	295	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=12.83;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:36:328,36,0
chrIX	382528	.	C	T	1114	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.84;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1147,126,0
chrIX	382690	.	T	C	1043	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=22.19;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1076,120,0
chrIX	382781	.	C	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=19.16;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1125,126,0
chrIX	382792	.	T	C	906	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.12;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:939,105,0
chrIX	382915	.	A	T	98.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DP=51;Dels=0.00;FS=9.004;HaplotypeScore=68.4165;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=-0.897;QD=1.93;ReadPosRankSum=-5.064;SB=-1.413e+02	GT:AD:DP:GQ:PL	1/1:31,20:51:15:131,15,0
chrIX	382918	.	C	A,T	29.34	LowQual;filter	AC=1,1;AF=0.500,0.500;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=31.6928;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.19;MQ0=0;QD=0.60;SB=-3.713e+02	GT:AD:DP:GQ:PL	1/2:0,44,4:48:34:88,40,34,47,0,41
chrIX	383027	.	G	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.02;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1583,174,0
chrIX	383041	.	C	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.5434;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.86;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1432,153,0
chrIX	383061	.	G	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.06;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1244,135,0
chrIX	383079	.	G	A	1124	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=16.53;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1157,123,0
chrIX	383176	.	T	C	645	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=17.43;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:81:678,81,0
chrIX	383369	.	A	G	886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=2.009;QD=15.82;ReadPosRankSum=2.362;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:2,54:56:99:919,108,0
chrIX	383530	.	G	A	1431	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.11;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1464,156,0
chrIX	384118	.	A	G	1819	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.754;QD=21.40;ReadPosRankSum=1.691;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1852,207,0
chrIX	384159	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.77;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1666,177,0
chrIX	384189	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.43;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1257,141,0
chrIX	384418	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4573;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.44;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1238,138,0
chrIX	384441	.	T	C	1483	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=13.0326;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.32;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1516,171,0
chrIX	384629	.	A	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.62;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1214,135,0
chrIX	384724	.	C	T	846	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=18.00;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:879,93,0
chrIX	384851	.	C	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.20;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1198,135,0
chrIX	385125	.	C	T	908	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.70;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:941,102,0
chrIX	385422	.	G	C	1233	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=7.4790;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.90;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1266,141,0
chrIX	385599	.	T	C	148.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=6.17;SB=-2.331e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:21:181,21,0
chrIX	385600	.	T	C	152.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=6.34;SB=-2.321e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:21:185,21,0
chrIX	385607	.	A	G	125.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=0;QD=5.44;SB=-1.811e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:18:158,18,0
chrIX	385724	.	G	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.08;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1298,153,0
chrIX	385951	.	C	T	365	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=13.04;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:45:398,45,0
chrIX	385961	.	A	G	526	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=13.49;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:63:559,63,0
chrIX	386051	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=22.24;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1345,147,0
chrIX	386125	.	A	T	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.046;QD=18.39;ReadPosRankSum=1.687;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1449,156,0
chrIX	386244	.	A	G	441	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=11.02;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:54:474,54,0
chrIX	386254	.	T	G	384	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=10.38;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:48:417,48,0
chrIX	386266	.	C	T	480	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=11.71;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:57:513,57,0
chrIX	386321	.	C	T	675	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=16.87;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:708,78,0
chrIX	386334	.	A	T	710	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=16.90;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:743,81,0
chrIX	386360	.	G	A	778	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=15.88;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:811,87,0
chrIX	386386	.	T	C	737	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.5101;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=13.40;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:90:770,90,0
chrIX	386399	.	G	A	837	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=14.68;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:96:870,96,0
chrIX	386447	.	T	G	852	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=18.52;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:885,96,0
chrIX	386492	.	G	C	626	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.42;MQ0=0;QD=15.27;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:72:659,72,0
chrIX	386511	.	C	T	402	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=29.8100;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=10.05;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:48:435,48,0
chrIX	386561	.	G	C	153.06	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.65;SB=-1.071e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:21:186,21,0
chrIX	386566	.	G	A	198.03	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.61;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:24:231,24,0
chrIX	386589	.	A	G	242	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;QD=8.96;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:30:275,30,0
chrIX	386592	.	G	A	240	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=35.35;MQ0=0;QD=8.89;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:30:273,30,0
chrIX	386665	.	G	T	766	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=18.24;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:799,87,0
chrIX	388220	.	A	G	710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.504;QD=19.19;ReadPosRankSum=2.183;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:2,35:37:84:743,84,0
chrIX	389030	.	C	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.5587;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=19.07;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1387,156,0
chrIX	389038	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.74;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1443,153,0
chrIX	389094	.	G	T	1963	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.24;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1996,216,0
chrIX	389156	.	C	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=24.02;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1450,156,0
chrIX	389168	.	T	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.02;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1147,126,0
chrIX	389212	.	T	C	579	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=62.14;MQ0=0;QD=17.55;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:66:612,66,0
chrIX	389270	.	A	G	55.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;DP=31;Dels=0.00;FS=1.509;HaplotypeScore=12.7817;MLEAC=1;MLEAF=0.500;MQ=55.70;MQ0=0;MQRankSum=-1.226;QD=1.78;ReadPosRankSum=-1.018;SB=-1.331e+02	GT:AD:DP:GQ:PL	0/1:16,14:31:12:85,0,12
chrIX	389295	.	C	T	309	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=9.97;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:39:342,39,0
chrIX	389434	.	A	G	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=4.337;HaplotypeScore=6.7719;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=0.383;QD=14.91;ReadPosRankSum=1.696;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1449,159,0
chrIX	389444	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.6875;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=14.27;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1417,159,0
chrIX	389512	.	T	A	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.625;DP=86;Dels=0.00;FS=21.483;HaplotypeScore=12.1983;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=1.897;QD=19.53;ReadPosRankSum=4.625;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:8,78:86:99:1713,183,0
chrIX	389745	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.65;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1487,165,0
chrIX	389872	.	G	C	2128	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.94;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2161,243,0
chrIX	389949	.	T	C	1159	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.7069;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=12.20;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1192,132,0
chrIX	389968	.	C	T	759	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=0;QD=8.72;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:87:792,87,0
chrIX	390119	.	T	C	1871	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.28;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1904,210,0
chrIX	390169	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.81;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1387,162,0
chrIX	390207	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7622;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.85;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1409,159,0
chrIX	390275	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.79;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1198,132,0
chrIX	390453	.	G	A	2853	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=12.8023;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.68;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,142:145:99:2886,297,0
chrIX	390674	.	C	T	551.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;DP=73;Dels=0.00;FS=6.425;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=49.37;MQ0=0;MQRankSum=-1.277;QD=7.55;ReadPosRankSum=-0.993;SB=-2.340e+02	GT:AD:DP:GQ:PL	0/1:31,41:73:99:581,0,433
chrIX	390679	.	G	A	534.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;DP=70;Dels=0.00;FS=8.709;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=48.28;MQ0=0;MQRankSum=-1.693;QD=7.63;ReadPosRankSum=-1.097;SB=-2.190e+02	GT:AD:DP:GQ:PL	0/1:29,41:70:99:564,0,418
chrIX	390682	.	A	T	348.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;DP=69;Dels=0.00;FS=5.099;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=48.09;MQ0=0;MQRankSum=1.518;QD=5.04;ReadPosRankSum=1.396;SB=-2.310e+02	GT:AD:DP:GQ:PL	0/1:42,27:69:99:378,0,533
chrIX	390703	.	T	A	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.186;DP=71;Dels=0.00;FS=2.335;HaplotypeScore=4.9012;MLEAC=1;MLEAF=0.500;MQ=48.90;MQ0=0;MQRankSum=1.256;QD=0.25;ReadPosRankSum=-0.208;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:52,18:71:48:48,0,935
chrIX	390718	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=19.35;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1291,135,0
chrIX	390814	.	A	T	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.104;DP=60;Dels=0.00;FS=21.264;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;MQRankSum=2.505;QD=16.92;ReadPosRankSum=1.284;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:9,51:60:97:1048,97,0
chrIX	390888	.	A	C	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=71;Dels=0.00;FS=2.551;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=0.191;QD=17.72;ReadPosRankSum=2.692;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:3,66:71:99:1291,144,0
chrIX	390899	.	T	G	1184	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.79;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1217,135,0
chrIX	390981	.	T	C	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chrIX	391113	.	A	T	807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;DP=55;Dels=0.00;FS=22.880;HaplotypeScore=8.6680;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;MQRankSum=2.333;QD=14.67;ReadPosRankSum=1.131;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:12,43:55:49:840,49,0
chrIX	391153	.	G	A	326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;DP=34;Dels=0.03;FS=6.734;HaplotypeScore=19.8780;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;MQRankSum=1.418;QD=9.59;ReadPosRankSum=1.628;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:39:359,39,0
chrIX	391166	.	A	G	130.13	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.05;FS=0.000;HaplotypeScore=15.4892;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=5.92;SB=-2.614e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:18:163,18,0
chrIX	391180	.	A	G	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.037;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.896;QD=4.45;ReadPosRankSum=2.520;SB=2.03	GT:AD:DP:GQ:PL	1/1:7,4:11:9:81,9,0
chrIX	391183	.	G	A	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.16;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:9:81,9,0
chrIX	391184	.	C	G	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.00;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:9:80,9,0
chrIX	391288	.	G	A	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589;DP=8;Dels=0.00;FS=14.472;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=0;MQRankSum=1.589;QD=2.72;ReadPosRankSum=1.067;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:2,6:8:6:53,6,0
chrIX	391294	.	T	A	17.12	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;DP=12;Dels=0.00;FS=2.932;HaplotypeScore=3.5651;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=0;MQRankSum=1.849;QD=1.43;ReadPosRankSum=0.740;SB=-3.377e-02	GT:AD:DP:GQ:PL	0/1:9,3:12:19:47,0,19
chrIX	391295	.	A	G	13.22	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;DP=13;Dels=0.00;FS=2.774;HaplotypeScore=3.5651;MLEAC=1;MLEAF=0.500;MQ=24.37;MQ0=0;MQRankSum=1.775;QD=1.02;ReadPosRankSum=0.930;SB=-6.692e-03	GT:AD:DP:GQ:PL	0/1:10,3:13:41:43,0,41
chrIX	391315	.	G	A	109.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=2.5655;MLEAC=2;MLEAF=1.00;MQ=23.05;MQ0=0;MQRankSum=-0.736;QD=6.43;ReadPosRankSum=0.736;SB=-1.926e+01	GT:AD:DP:GQ:PL	1/1:4,13:17:15:142,15,0
chrIX	391327	.	G	T	61.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;DP=19;Dels=0.00;FS=1.871;HaplotypeScore=22.6421;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=0;MQRankSum=-0.531;QD=3.21;ReadPosRankSum=1.184;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:9,10:19:37:91,0,37
chrIX	391354	.	G	A	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DP=27;Dels=0.00;FS=3.982;HaplotypeScore=24.4295;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=4;MQRankSum=1.581;QD=1.00;ReadPosRankSum=-0.097;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:18,9:27:57:57,0,108
chrIX	391372	.	G	T	175.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DP=51;Dels=0.00;FS=9.640;HaplotypeScore=13.5577;MLEAC=1;MLEAF=0.500;MQ=18.43;MQ0=21;MQRankSum=1.673;QD=3.43;ReadPosRankSum=1.014;SB=-1.209e+02	GT:AD:DP:GQ:PL	0/1:19,31:51:46:205,0,46
chrIX	391408	.	G	A	25.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;DP=72;Dels=0.00;FS=1.283;HaplotypeScore=13.2655;MLEAC=1;MLEAF=0.500;MQ=19.79;MQ0=30;MQRankSum=2.928;QD=0.35;ReadPosRankSum=0.070;SB=-1.160e+02	GT:AD:DP:GQ:PL	0/1:49,23:72:55:55,0,315
chrIX	391411	.	A	G	107.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;DP=76;Dels=0.00;FS=18.799;HaplotypeScore=15.3595;MLEAC=1;MLEAF=0.500;MQ=19.65;MQ0=30;MQRankSum=0.680;QD=1.41;ReadPosRankSum=-0.036;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,28:76:99:137,0,236
chrIX	391419	.	T	A	51.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=16.3212;MLEAC=1;MLEAF=0.500;MQ=19.49;MQ0=30;MQRankSum=1.897;QD=0.65;ReadPosRankSum=-0.885;SB=-1.290e+02	GT:AD:DP:GQ:PL	0/1:50,28:78:81:81,0,331
chrIX	391432	.	A	G	100.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;DP=83;Dels=0.00;FS=31.963;HaplotypeScore=14.2132;MLEAC=1;MLEAF=0.500;MQ=18.70;MQ0=33;MQRankSum=-1.046;QD=1.20;ReadPosRankSum=1.975;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,24:83:99:130,0,290
chrIX	391441	.	A	G	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.879;DP=82;Dels=0.00;FS=27.699;HaplotypeScore=12.1303;MLEAC=1;MLEAF=0.500;MQ=18.58;MQ0=30;MQRankSum=3.817;QD=0.56;ReadPosRankSum=-1.643;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:68,14:82:76:76,0,352
chrIX	391453	.	G	T	40.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DP=72;Dels=0.00;FS=7.171;HaplotypeScore=26.6651;MLEAC=1;MLEAF=0.500;MQ=18.78;MQ0=23;MQRankSum=-2.523;QD=0.56;ReadPosRankSum=0.384;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:56,16:72:70:70,0,331
chrIX	391465	.	T	A	183.11	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=37.4289;MLEAC=1;MLEAF=0.500;MQ=19.14;MQ0=15;MQRankSum=1.838;QD=3.10;ReadPosRankSum=0.489;SB=-1.811e+02	GT:AD:DP:GQ:PL	0/1:23,35:58:13:213,0,13
chrIX	391466	.	A	G	201.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=37.4289;MLEAC=1;MLEAF=0.500;MQ=18.98;MQ0=16;MQRankSum=1.584;QD=3.35;ReadPosRankSum=0.393;SB=-2.036e+02	GT:AD:DP:GQ:PL	0/1:22,36:59:68:231,0,68
chrIX	391498	.	G	T	239.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;DP=58;Dels=0.00;FS=5.287;HaplotypeScore=11.2328;MLEAC=1;MLEAF=0.500;MQ=17.65;MQ0=18;MQRankSum=1.402;QD=4.12;ReadPosRankSum=1.490;SB=-8.899e+01	GT:AD:DP:GQ:PL	0/1:26,32:58:29:269,0,29
chrIX	391534	.	A	G	36.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;DP=51;Dels=0.00;FS=16.128;HaplotypeScore=7.2346;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=13;MQRankSum=-1.867;QD=0.71;ReadPosRankSum=2.414;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:29,22:51:66:66,0,241
chrIX	391603	.	A	G	47.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.380;DP=12;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.77;MQ0=6;MQRankSum=-1.380;QD=4.00;ReadPosRankSum=-1.380;SB=2.06	GT:AD:DP:GQ:PL	1/1:6,6:12:9:80,9,0
chrIX	391639	.	A	G	14.20	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;DP=20;Dels=0.00;FS=11.761;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=15.93;MQ0=9;MQRankSum=1.271;QD=0.71;ReadPosRankSum=1.271;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:14,6:20:19:44,0,19
chrIX	391672	.	T	A	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.95;MQ0=10;MQRankSum=-0.244;QD=1.59;ReadPosRankSum=-0.529;SB=-2.042e+00	GT:AD:DP:GQ:PL	0/1:14,8:22:42:65,0,42
chrIX	391673	.	A	G	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;DP=22;Dels=0.00;FS=3.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.95;MQ0=10;MQRankSum=0.600;QD=1.59;ReadPosRankSum=0.536;SB=-2.042e+00	GT:AD:DP:GQ:PL	0/1:15,7:22:42:65,0,42
chrIX	391810	.	A	G	1270	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.016;DP=121;Dels=0.00;FS=8.697;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=26;MQRankSum=3.795;QD=10.50;ReadPosRankSum=4.226;SB=-6.517e+02	GT:AD:DP:GQ:PL	1/1:17,104:121:32:1303,32,0
chrIX	391837	.	G	A	1603	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=105;Dels=0.00;FS=3.957;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=8;MQRankSum=0.054;QD=15.27;ReadPosRankSum=1.696;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:1636,180,0
chrIX	391867	.	A	G	395.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;DP=65;Dels=0.00;FS=5.560;HaplotypeScore=6.0506;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=6;MQRankSum=0.969;QD=6.08;ReadPosRankSum=1.290;SB=-2.500e+02	GT:AD:DP:GQ:PL	0/1:30,35:65:99:425,0,149
chrIX	391876	.	T	G	296.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;DP=54;Dels=0.00;FS=8.093;HaplotypeScore=10.3628;MLEAC=1;MLEAF=0.500;MQ=21.36;MQ0=5;MQRankSum=0.955;QD=5.48;ReadPosRankSum=1.920;SB=-1.810e+02	GT:AD:DP:GQ:PL	0/1:23,31:54:99:326,0,164
chrIX	391933	.	C	T	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=3;QD=3.30;SB=-2.376e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:6:51,6,0
chrIX	392062	.	A	G	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.43;MQ0=4;MQRankSum=0.720;QD=1.04;ReadPosRankSum=0.720;SB=-5.437e-03	GT:AD:DP:GQ:PL	0/1:2,8:10:33:40,0,33
chrIX	392074	.	G	A	36.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.43;MQ0=1;MQRankSum=1.221;QD=4.00;ReadPosRankSum=0.322;SB=-3.801e-03	GT:AD:DP:GQ:PL	0/1:3,6:9:29:66,0,29
chrIX	392077	.	G	A	166.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.15;MQ0=2;QD=12.77;SB=-2.367e-02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:199,24,0
chrIX	392083	.	T	G	10.42	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=2;MQRankSum=-0.938;QD=0.61;ReadPosRankSum=1.371;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:14,3:17:40:40,0,137
chrIX	392089	.	G	A	223	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=3;QD=10.14;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:30:256,30,0
chrIX	392119	.	A	G	294.17	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.373;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=13;MQRankSum=1.251;QD=6.84;ReadPosRankSum=2.898;SB=-7.098e+01	GT:AD:DP:GQ:PL	1/1:9,34:43:17:327,17,0
chrIX	392164	.	G	A	74.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=17.18;MQ0=32;MQRankSum=1.929;QD=1.25;ReadPosRankSum=0.437;SB=-4.101e+01	GT:AD:DP:GQ:PL	0/1:45,14:59:79:104,0,79
chrIX	392175	.	T	A	42.05	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=4.5629;MLEAC=1;MLEAF=0.500;MQ=14.56;MQ0=32;MQRankSum=2.140;QD=0.79;ReadPosRankSum=-1.506;SB=-2.105e+01	GT:AD:DP:GQ:PL	0/1:39,12:52:17:72,0,17
chrIX	392188	.	A	G	39.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.231;DP=58;Dels=0.00;FS=14.211;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=11.01;MQ0=39;MQRankSum=-0.139;QD=0.69;ReadPosRankSum=1.528;SB=-3.747e+01	GT:AD:DP:GQ:PL	1/1:13,45:58:9:72,9,0
chrIX	392269	.	A	G	125.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.588;DP=40;Dels=0.00;FS=6.726;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=24;MQRankSum=1.376;QD=3.13;ReadPosRankSum=2.117;SB=2.87	GT:AD:DP:GQ:PL	1/1:13,27:40:18:158,18,0
chrIX	392458	.	A	G	305.34	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=9.0755;MLEAC=1;MLEAF=0.500;MQ=19.45;MQ0=12;MQRankSum=2.984;QD=5.26;ReadPosRankSum=4.399;SB=0.176	GT:AD:DP:GQ:PL	0/1:18,39:58:8:335,0,8
chrIX	392470	.	A	G	58.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.3687;MLEAC=1;MLEAF=0.500;MQ=19.58;MQ0=12;MQRankSum=-2.504;QD=0.97;ReadPosRankSum=-4.385;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,16:60:88:88,0,360
chrIX	392515	.	G	A	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.22;MQ0=6;MQRankSum=2.136;QD=0.69;ReadPosRankSum=1.123;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,7:39:57:57,0,265
chrIX	392526	.	T	A	49.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=19.14;MQ0=5;MQRankSum=0.833;QD=2.04;ReadPosRankSum=0.482;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,6:24:79:79,0,181
chrIX	392539	.	A	G	127.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=1;MQRankSum=0.158;QD=10.59;ReadPosRankSum=0.791;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,10:12:18:160,18,0
chrIX	392551	.	G	A	10.48	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.61;MQ0=2;MQRankSum=0.736;QD=2.10;ReadPosRankSum=-0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:3,2:5:15:40,0,15
chrIX	392656	.	A	G	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=11;MQRankSum=1.240;QD=0.75;ReadPosRankSum=0.000;SB=-4.926e+01	GT:AD:DP:GQ:PL	1/1:4,21:25:6:50,6,0
chrIX	392704	.	A	G	814	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=9.3144;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=2;QD=15.65;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:96:847,96,0
chrIX	392776	.	A	G	1595	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=19.94;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1628,186,0
chrIX	392779	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;MQRankSum=-1.176;QD=19.42;ReadPosRankSum=1.689;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1606,183,0
chrIX	392932	.	G	T	808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=59;Dels=0.00;FS=3.841;HaplotypeScore=50.9211;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=1;MQRankSum=0.620;QD=13.69;ReadPosRankSum=2.127;SB=-4.094e+02	GT:AD:DP:GQ:PL	1/1:7,52:59:53:841,53,0
chrIX	392939	.	C	G	622.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=63;Dels=0.00;FS=5.085;HaplotypeScore=54.1076;MLEAC=1;MLEAF=0.500;MQ=35.22;MQ0=1;MQRankSum=0.759;QD=9.88;ReadPosRankSum=3.082;SB=-3.354e+02	GT:AD:DP:GQ:PL	0/1:13,47:63:7:652,0,7
chrIX	392965	.	A	G	55.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;DP=67;Dels=0.00;FS=6.539;HaplotypeScore=4.9408;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=2;MQRankSum=-0.522;QD=0.82;ReadPosRankSum=-0.568;SB=-8.007e+00	GT:AD:DP:GQ:PL	0/1:52,15:67:85:85,0,580
chrIX	392968	.	G	A	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.998;DP=66;Dels=0.00;FS=4.020;HaplotypeScore=8.6290;MLEAC=1;MLEAF=0.500;MQ=31.50;MQ0=2;MQRankSum=0.264;QD=0.56;ReadPosRankSum=0.206;SB=-7.101e+01	GT:AD:DP:GQ:PL	0/1:47,19:66:67:67,0,511
chrIX	392998	.	G	A	323.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;DP=78;Dels=0.00;FS=0.949;HaplotypeScore=60.0309;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=2;MQRankSum=1.276;QD=4.14;ReadPosRankSum=1.615;SB=-3.110e+02	GT:AD:DP:GQ:PL	0/1:28,50:78:99:353,0,236
chrIX	393028	.	G	A	603	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=65.8740;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=1;QD=8.61;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:72:636,72,0
chrIX	393067	.	A	G	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;MQRankSum=0.000;QD=12.80;ReadPosRankSum=1.660;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1262,138,0
chrIX	393106	.	C	T	1634	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4883;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.57;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1667,183,0
chrIX	393177	.	G	C	1070	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=14.46;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1103,123,0
chrIX	393181	.	G	A	1067	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=15.24;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1100,123,0
chrIX	393186	.	T	A	972	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=13.69;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1005,114,0
chrIX	393195	.	G	C	969	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2753;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=12.11;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1002,114,0
chrIX	393280	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=20.64;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1746,195,0
chrIX	396365	.	G	A	1965	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.36;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1998,216,0
chrIX	396434	.	C	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.81;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1360,153,0
chrIX	396889	.	C	T	993	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=15.76;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1026,108,0
chrIX	396902	.	C	T	880	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=15.17;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:913,99,0
chrIX	396906	.	A	G	743	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=13.76;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:776,87,0
chrIX	397061	.	C	T	1011	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=15.80;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1044,111,0
chrIX	397063	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=15.71;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1007,111,0
chrIX	397113	.	T	A	876	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=13.69;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:909,102,0
chrIX	397178	.	G	A	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=66.0284;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=0.30;SB=-9.898e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:6:54,6,0
chrIX	397626	.	A	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.22;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1417,156,0
chrIX	397837	.	T	C	1566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=3.018;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.517;QD=21.16;ReadPosRankSum=2.217;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1599,180,0
chrIX	399062	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=12.3717;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.28;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:85:99:1757,186,0
chrIX	399357	.	G	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=16.73;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1940,210,0
chrIX	399370	.	A	C	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=7.720;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;MQRankSum=-1.629;QD=16.42;ReadPosRankSum=2.400;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:2,97:99:99:1659,180,0
chrIX	399384	.	G	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.64;MQ0=0;QD=15.49;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1567,165,0
chrIX	399393	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;QD=13.46;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1285,141,0
chrIX	399396	.	T	A	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;MQRankSum=-1.575;QD=13.76;ReadPosRankSum=1.693;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1244,135,0
chrIX	399404	.	G	A	978	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=0;QD=13.22;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1011,108,0
chrIX	399414	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=34.73;MQ0=0;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.681;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1001,108,0
chrIX	399456	.	C	T	921	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=14.39;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:954,105,0
chrIX	399517	.	C	T	1282	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=71.4159;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=15.45;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1315,141,0
chrIX	399532	.	G	A	1418	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=78.3139;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=15.09;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1451,156,0
chrIX	399998	.	A	G	1681	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=102;Dels=0.00;FS=4.404;HaplotypeScore=7.9637;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;MQRankSum=-0.985;QD=16.48;ReadPosRankSum=0.136;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1714,192,0
chrIX	400007	.	T	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=89.5219;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=14.16;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,101:103:99:1491,162,0
chrIX	400141	.	A	G	2359	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.66;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2392,264,0
chrIX	400481	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.43;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1374,150,0
chrIX	400508	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=16.33;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1176,129,0
chrIX	400926	.	C	T	1260	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.5448;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.36;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1293,141,0
chrIX	401270	.	C	A	993	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.69;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1026,111,0
chrIX	401375	.	C	T	1867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.069;QD=19.25;ReadPosRankSum=1.106;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1900,190,0
chrIX	401612	.	G	A	1504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495;DP=75;Dels=0.00;FS=4.009;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.590;QD=20.05;ReadPosRankSum=-0.973;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1537,144,0
chrIX	401856	.	C	T	2204	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.26;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2237,240,0
chrIX	401897	.	C	T	1669	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.5832;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.64;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1702,186,0
chrIX	401900	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;MQRankSum=0.644;QD=15.35;ReadPosRankSum=0.157;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:1,120:122:99:1906,210,0
chrIX	402026	.	G	A	2005	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.59;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2038,222,0
chrIX	402165	.	T	C	1126	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=16.81;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1159,129,0
chrIX	402533	.	A	T	949	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.61;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:982,108,0
chrIX	402557	.	C	T	679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.922;QD=14.45;ReadPosRankSum=0.553;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:58:712,58,0
chrIX	402623	.	T	C	1263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=6.471;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.756;QD=17.79;ReadPosRankSum=1.635;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1296,147,0
chrIX	402823	.	C	T	1386	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.38;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1419,150,0
chrIX	402833	.	A	G	1029	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.37;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1062,117,0
chrIX	403232	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=22.11;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1824,198,0
chrIX	403261	.	T	C	2280	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.11;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2313,249,0
chrIX	403289	.	A	G	3022	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.13;SB=-1.410e+03	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3055,336,0
chrIX	403447	.	C	T	1807	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.31;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1840,198,0
chrIX	403510	.	C	T	2168	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2649;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.02;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2201,240,0
chrIX	403621	.	C	T	2301	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.56;SB=-1.366e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2334,249,0
chrIX	403622	.	C	T	2270	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.87;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2303,249,0
chrIX	403638	.	C	A	2148	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.20;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2181,237,0
chrIX	403760	.	A	G	2057	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.88;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2090,228,0
chrIX	403814	.	T	C	1906	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.191;DP=97;Dels=0.00;FS=3.033;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=1.439;QD=19.65;ReadPosRankSum=2.346;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:2,93:97:99:1939,219,0
chrIX	403850	.	G	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.26;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2180,243,0
chrIX	403943	.	C	T	2957	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=20.68;SB=-1.461e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2990,327,0
chrIX	403997	.	G	A	2851	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.37;SB=-1.604e+03	GT:AD:DP:GQ:PL	1/1:0,120:122:99:2884,306,0
chrIX	415609	.	G	T	968	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.26;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1001,111,0
chrIX	416240	.	G	A	2095	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1452;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.16;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2128,228,0
chrIX	416276	.	T	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.34;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1559,171,0
chrIX	416282	.	T	A	1444	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.41;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1477,162,0
chrIX	416339	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.91;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1470,159,0
chrIX	416380	.	A	G	1437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=3.140;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.560;QD=21.13;ReadPosRankSum=1.681;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1470,162,0
chrIX	417395	.	C	T	2315	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.44;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2348,258,0
chrIX	417604	.	C	A	2577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=116;Dels=0.00;FS=3.087;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.304;QD=22.22;ReadPosRankSum=0.912;SB=-1.421e+03	GT:AD:DP:GQ:PL	1/1:1,114:116:99:2610,288,0
chrIX	417992	.	C	T	3377.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.37;SB=-1.916e+03	GT:AD:DP:GQ:PL	1/1:0,158:158:99:3377,369,0
chrIX	418028	.	G	A	3036	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.7367;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.65;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3069,342,0
chrIX	418430	.	T	A	1795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=94;Dels=0.00;FS=3.774;HaplotypeScore=7.6742;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.801;QD=19.10;ReadPosRankSum=1.620;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1828,201,0
chrIX	418524	.	A	G	1457	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=77;Dels=0.00;FS=2.943;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;MQRankSum=-1.457;QD=18.92;ReadPosRankSum=2.386;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1490,162,0
chrIX	418530	.	A	G	1383	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=18.95;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1416,153,0
chrIX	418532	.	A	G	1309	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=18.18;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1342,150,0
chrIX	418547	.	T	A	1085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.363;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;MQRankSum=-0.708;QD=15.28;ReadPosRankSum=1.683;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1118,117,0
chrIX	418559	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=15.98;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1423,153,0
chrIX	418859	.	G	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.37;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1744,192,0
chrIX	419141	.	G	A	1753	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.62;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1786,192,0
chrIX	419495	.	A	G	653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=13.118;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;MQRankSum=-1.225;QD=15.93;ReadPosRankSum=1.648;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:1,40:41:78:686,78,0
chrIX	419510	.	A	G	908	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.16;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,48:50:99:941,102,0
chrIX	419726	.	G	A	811	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=25.34;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:90:844,90,0
chrIX	419811	.	G	A	1589	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=24.45;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1622,174,0
chrIX	419999	.	A	G	1752	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.325;QD=20.61;ReadPosRankSum=1.610;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1785,201,0
chrIX	420167	.	T	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.56;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1391,159,0
chrIX	420215	.	T	C	1540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.052;QD=23.33;ReadPosRankSum=1.575;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1573,174,0
chrIX	420788	.	C	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.49;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1549,171,0
chrIX	420791	.	C	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.20;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1569,165,0
chrIX	420815	.	G	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.76;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1309,138,0
chrIX	421566	.	G	A	1756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1995;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.972;QD=21.41;ReadPosRankSum=1.648;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1789,192,0
chrIX	422958	.	G	A	2095	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2128,231,0
chrIX	423041	.	G	A	2299	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.76;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2332,255,0
chrIX	423400	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.11;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1111,123,0
chrIX	423571	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=8.2859;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.83;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1257,141,0
chrIX	424169	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=4.821;HaplotypeScore=8.1971;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.338;QD=18.19;ReadPosRankSum=1.653;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1634,180,0
chrIX	424253	.	A	G	1035	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1068,117,0
chrIX	424322	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.06;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1291,141,0
chrIX	424438	.	A	G	680	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.00;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:78:713,78,0
chrIX	424605	.	T	C	1515	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.75;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1548,171,0
chrIX	424619	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.19;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1325,150,0
chrIX	424776	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.03;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1337,147,0
chrIX	424793	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.74;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1176,132,0
chrIX	424866	.	T	C	813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=4.416;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;MQRankSum=-0.848;QD=17.30;ReadPosRankSum=1.659;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:846,99,0
chrIX	424876	.	A	C	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;MQRankSum=-1.308;QD=17.57;ReadPosRankSum=1.591;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:894,102,0
chrIX	424879	.	C	T	926	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.12;MQ0=0;QD=18.52;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:959,108,0
chrIX	424908	.	C	A	826	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=15.02;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:859,96,0
chrIX	424916	.	C	A	772	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=14.57;SB=-2.050e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:90:805,90,0
chrIX	424980	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.00;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1249,138,0
chrIX	425204	.	C	T	463	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;QD=9.65;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:57:496,57,0
chrIX	425242	.	G	A	137.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;DP=69;Dels=0.00;FS=3.375;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=31.00;MQ0=0;MQRankSum=-1.219;QD=1.99;ReadPosRankSum=-7.141;SB=-2.010e+02	GT:AD:DP:GQ:PL	0/1:36,33:69:26:167,0,26
chrIX	425281	.	G	A	436	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=8.23;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:51:469,51,0
chrIX	425407	.	G	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=17.82;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1209,132,0
chrIX	425440	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9383;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=16.92;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1234,141,0
chrIX	425460	.	A	G	1316	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=17.32;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1349,156,0
chrIX	425491	.	G	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=18.12;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1446,156,0
chrIX	425513	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=16.44;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1299,144,0
chrIX	425514	.	G	A	1233	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=16.01;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1266,138,0
chrIX	425605	.	A	G	1563	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8836;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=17.97;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1596,180,0
chrIX	425775	.	T	C	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.252;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=1.404;QD=21.65;ReadPosRankSum=1.639;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1635,186,0
chrIX	425817	.	A	G	1439	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=17.34;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1472,165,0
chrIX	425829	.	C	T	1543	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=15.91;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1576,177,0
chrIX	425839	.	C	T	1795	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=15.75;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1828,207,0
chrIX	425847	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;QD=15.08;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:1903,210,0
chrIX	425941	.	C	T	2222	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=22.44;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2255,246,0
chrIX	425954	.	G	A	1881	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=21.37;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1914,207,0
chrIX	425973	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.8271;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.38;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1777,201,0
chrIX	426001	.	A	G	1746	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=20.30;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1779,198,0
chrIX	426032	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.73;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1513,171,0
chrIX	426035	.	T	C	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=4.663;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.548;QD=19.34;ReadPosRankSum=1.688;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1561,171,0
chrIX	426091	.	T	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.90;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1685,183,0
chrIX	426151	.	T	A	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.620;QD=19.56;ReadPosRankSum=1.689;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1617,174,0
chrIX	426186	.	A	G	1877	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6848;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=20.18;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1910,216,0
chrIX	426260	.	T	A	2614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=134;Dels=0.00;FS=6.809;HaplotypeScore=14.9438;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.453;QD=19.51;ReadPosRankSum=2.376;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:2,132:134:99:2647,291,0
chrIX	426339	.	T	C	2130	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.52;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2163,240,0
chrIX	426486	.	G	A	1841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DP=94;Dels=0.00;FS=6.773;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.284;QD=19.59;ReadPosRankSum=1.746;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1874,193,0
chrIX	426627	.	C	A	3054	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.9093;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.49;SB=-1.653e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3087,333,0
chrIX	427061	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.31;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1290,141,0
chrIX	427189	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.48;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1260,138,0
chrIX	428213	.	A	G	1765	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=20.29;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1798,201,0
chrIX	428304	.	G	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=19.21;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1435,156,0
chrIX	428359	.	A	G	736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-1.732;QD=15.66;ReadPosRankSum=1.655;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:1,44:47:90:769,90,0
chrIX	428376	.	A	G	679	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=14.15;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:81:712,81,0
chrIX	428399	.	C	T	822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=64;Dels=0.00;FS=9.014;HaplotypeScore=2.7269;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=0.096;QD=12.84;ReadPosRankSum=2.064;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:96:855,96,0
chrIX	428400	.	T	C	737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.238;DP=70;Dels=0.03;FS=30.381;HaplotypeScore=4.6599;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-2.018;QD=10.53;ReadPosRankSum=4.278;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:7,61:68:70:770,70,0
chrIX	428461	.	C	G	2224	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6095;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.53;SB=-1.473e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2257,246,0
chrIX	428537	.	G	A	2091	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=19.91;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2124,234,0
chrIX	428597	.	A	T	629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;MQRankSum=-1.732;QD=10.15;ReadPosRankSum=1.619;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:72:662,72,0
chrIX	428607	.	G	A	626	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.59;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:72:659,72,0
chrIX	428609	.	G	A	642	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:72:675,72,0
chrIX	428656	.	C	G	439	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=12.91;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:54:472,54,0
chrIX	428720	.	T	G	714	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=18.79;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:747,84,0
chrIX	428722	.	A	G	671	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=18.14;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:704,81,0
chrIX	428729	.	C	T	691	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=17.72;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:724,81,0
chrIX	428764	.	G	A	1113	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=15.04;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1146,123,0
chrIX	428776	.	A	C	1087	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=13.59;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1120,129,0
chrIX	428868	.	G	A	2398	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=24.72;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2431,264,0
chrIX	428895	.	C	T	1637	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=18.60;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1670,177,0
chrIX	428912	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=16.60;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1427,156,0
chrIX	428931	.	T	C	1063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=-0.393;QD=13.81;ReadPosRankSum=1.640;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,74:77:99:1096,123,0
chrIX	428948	.	C	T	831	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.41;MQ0=0;QD=12.98;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:96:864,96,0
chrIX	428983	.	A	C	966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=4.181;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;MQRankSum=0.094;QD=17.56;ReadPosRankSum=1.669;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:999,111,0
chrIX	429037	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=-0.601;QD=23.04;ReadPosRankSum=1.662;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1162,126,0
chrIX	429127	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=1.210;QD=19.16;ReadPosRankSum=1.685;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1451,159,0
chrIX	429153	.	A	G	1008	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=0;QD=14.61;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1041,114,0
chrIX	429223	.	G	A	1297	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=14.41;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1330,144,0
chrIX	429241	.	T	G	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=-0.962;QD=14.75;ReadPosRankSum=1.783;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:2,94:96:99:1449,165,0
chrIX	429417	.	C	T	1764	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.75;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1797,195,0
chrIX	429462	.	T	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=20.07;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1940,210,0
chrIX	429465	.	G	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=19.06;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1882,207,0
chrIX	430005	.	C	T	2034	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6560;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.64;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2067,219,0
chrIX	430247	.	G	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0839;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.48;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1569,171,0
chrIX	430276	.	G	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.00;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1356,153,0
chrIX	430585	.	G	A	1837	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.61;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1870,216,0
chrIX	430600	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.43;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1767,192,0
chrIX	431819	.	A	C	1933	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=1;MQRankSum=-0.566;QD=19.53;ReadPosRankSum=1.697;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1966,216,0
chrIX	431988	.	A	C	1112	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=6;QD=17.11;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1145,126,0
chrIX	432102	.	T	A	1824	filter	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=10;QD=17.88;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1857,198,0
chrIX	432723	.	T	C	176.03	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DP=23;Dels=0.00;FS=2.884;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=6;MQRankSum=-0.671;QD=7.65;ReadPosRankSum=-1.714;SB=-1.070e+02	GT:AD:DP:GQ:PL	0/1:5,18:23:20:206,0,20
chrIX	432859	.	G	A	516	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=27.80;MQ0=2;QD=16.65;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:60:549,60,0
chrIX	432980	.	G	A	398	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=13;QD=8.84;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:48:431,48,0
chrIX	432981	.	G	A	399	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=19.66;MQ0=13;QD=8.87;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:48:432,48,0
chrIX	433072	.	G	A	819	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=25.14;MQ0=8;QD=18.20;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:852,93,0
chrIX	433182	.	T	C	336	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=25.58;MQ0=1;QD=18.67;SB=-8.100e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:42:369,42,0
chrIX	433202	.	T	C	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.24;MQ0=2;QD=4.16;SB=-2.376e+01	GT:AD:DP:GQ:PL	1/1:0,5:5:6:52,6,0
chrIX	433213	.	G	A	77.51	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=2;QD=8.61;SB=-2.526e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:110,12,0
chrIX	433253	.	G	A	95.26	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.63;MQ0=1;QD=5.29;SB=-2.724e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:15:128,15,0
chrIX	433284	.	T	C	281	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=2;QD=7.21;SB=-1.220e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:36:314,36,0
chrIX	433298	.	A	G	389	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.423;DP=54;Dels=0.00;FS=10.926;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=2;MQRankSum=-1.475;QD=7.20;ReadPosRankSum=3.938;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:8,46:54:51:422,51,0
chrIX	433711	.	G	A	285.02	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.306;DP=40;Dels=0.00;FS=10.911;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.31;MQ0=3;MQRankSum=1.419;QD=7.13;ReadPosRankSum=2.142;SB=-2.139e-02	GT:AD:DP:GQ:PL	1/1:6,34:40:26:318,26,0
chrIX	433712	.	T	G	307	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.446;DP=40;Dels=0.00;FS=15.441;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.31;MQ0=3;MQRankSum=1.337;QD=7.67;ReadPosRankSum=0.545;SB=-6.793e-03	GT:AD:DP:GQ:PL	1/1:1,34:40:45:340,45,0
chrIX	433724	.	A	T	433	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.07;MQ0=3;MQRankSum=0.718;QD=9.84;ReadPosRankSum=1.564;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:2,42:44:60:466,60,0
chrIX	433755	.	G	A	343	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.743;DP=52;Dels=0.00;FS=14.472;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.10;MQ0=24;MQRankSum=1.114;QD=6.60;ReadPosRankSum=-0.371;SB=-6.622e-03	GT:AD:DP:GQ:PL	1/1:2,50:52:48:376,48,0
chrIX	433912	.	A	G	2049	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=85;Dels=0.00;FS=19.138;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=1.479;QD=24.11;ReadPosRankSum=1.690;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,81:85:99:2082,228,0
chrIX	434222	.	T	C	897	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=2;QD=15.74;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:930,102,0
chrIX	434276	.	C	T	2010	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=16.61;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2043,225,0
chrIX	434368	.	G	A	2054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.3432;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;MQRankSum=-0.513;QD=16.17;ReadPosRankSum=0.629;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:2,125:127:99:2087,234,0
chrIX	434374	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.234;DP=121;Dels=0.00;FS=4.988;HaplotypeScore=7.5912;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;MQRankSum=0.379;QD=15.48;ReadPosRankSum=3.383;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:4,114:121:99:1906,207,0
chrIX	434422	.	T	C	1826	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-0.825;QD=17.56;ReadPosRankSum=2.330;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:2,102:104:99:1859,207,0
chrIX	434452	.	G	A	2059	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.38;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2092,231,0
chrIX	434599	.	G	T	2727	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=23.51;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2760,297,0
chrIX	434723	.	C	T	3130	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=24.84;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3163,339,0
chrIX	434737	.	A	G	3124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=131;Dels=0.00;FS=5.119;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=0.346;QD=23.85;ReadPosRankSum=1.705;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:1,129:131:99:3157,342,0
chrIX	434926	.	T	A	5269.01	PASS	AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.62;SB=-2.402e+03	GT:AD:DP:GQ:PL	1/1:0,214:214:99:5269,570,0
chrIX	435081	.	C	G	120.13	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=1.25;SB=-4.371e+02	GT:AD:DP:GQ:PL	1/1:0,93:96:18:153,18,0
chrIX	435321	.	G	A	2747	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.46;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,126:128:99:2780,309,0
chrIX	435798	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.267;QD=20.46;ReadPosRankSum=1.681;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1404,159,0
chrIX	435856	.	C	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.72;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1456,156,0
chrIX	436015	.	G	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.28;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1267,135,0
chrIX	436023	.	G	C	1062	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.13;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1095,120,0
chrIX	436215	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.933;QD=21.75;ReadPosRankSum=-0.977;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1773,195,0
chrIX	436329	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.07;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1135,126,0
chrIX	436717	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.42;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1249,138,0
chrIX	436772	.	A	G	2247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.507;QD=22.25;ReadPosRankSum=1.662;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:1,98:101:99:2280,249,0
chrIX	436849	.	T	C	2173	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.87;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2206,243,0
chrIX	437078	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.46;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1648,180,0
chrIX	437187	.	G	A	1019.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;DP=68;Dels=0.00;FS=1.245;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=2;MQRankSum=4.383;QD=15.00;ReadPosRankSum=-1.076;SB=-5.948e+02	GT:AD:DP:GQ:PL	1/1:12,56:68:6:1051,6,0
chrIX	437226	.	A	G	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;DP=58;Dels=0.00;FS=3.137;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=39.51;MQ0=4;MQRankSum=-3.106;QD=0.38;ReadPosRankSum=0.546;SB=-5.007e+00	GT:AD:DP:GQ:PL	0/1:47,11:58:52:52,0,571
chrIX	437271	.	G	A	404	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=25.23;MQ0=12;QD=7.48;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,53:54:48:437,48,0
chrIX	437345	.	C	T	705	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=7;QD=9.66;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:78:738,78,0
chrIX	437423	.	C	G	654	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=0;QD=19.82;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:75:687,75,0
chrIX	437424	.	A	T	656	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=27.09;MQ0=0;MQRankSum=1.471;QD=19.88;ReadPosRankSum=1.773;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:2,31:33:75:689,75,0
chrIX	437427	.	C	A	629	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=25.0959;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;MQRankSum=2.286;QD=20.97;ReadPosRankSum=0.457;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:2,28:30:69:662,69,0
chrIX	437428	.	G	A	608	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=25.0959;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=20.97;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,29:29:69:641,69,0
chrIX	437431	.	T	A	630	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.729;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=51.5525;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;MQRankSum=2.292;QD=20.32;ReadPosRankSum=0.040;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:2,29:31:69:663,69,0
chrIX	437449	.	T	A	398	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=16.58;SB=-6.793e-03	GT:AD:DP:GQ:PL	1/1:0,23:24:45:431,45,0
chrIX	437451	.	A	G	359	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.144;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;MQRankSum=1.589;QD=14.96;ReadPosRankSum=-1.589;SB=-7.065e-03	GT:AD:DP:GQ:PL	1/1:1,23:24:42:392,42,0
chrIX	437459	.	C	G	317	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;QD=15.10;SB=-7.604e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:39:350,39,0
chrIX	437461	.	T	G	314	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=0;QD=14.27;SB=-7.604e-03	GT:AD:DP:GQ:PL	1/1:0,21:22:39:347,39,0
chrIX	437523	.	T	C	571	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=1;QD=15.03;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:604,69,0
chrIX	437544	.	T	C	567	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=43;Dels=0.00;FS=5.497;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=4;MQRankSum=0.222;QD=13.19;ReadPosRankSum=1.644;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:69:600,69,0
chrIX	437589	.	T	A	211.01	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.49;MQ0=13;QD=5.55;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:27:244,27,0
chrIX	437667	.	G	A	50.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.699;DP=32;Dels=0.00;FS=46.361;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=14.89;MQ0=8;MQRankSum=0.191;QD=1.59;ReadPosRankSum=-0.318;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:10,22:32:9:83,9,0
chrIX	437685	.	C	T	48.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=36;Dels=0.00;FS=63.087;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=16.77;MQ0=5;MQRankSum=0.196;QD=1.36;ReadPosRankSum=1.226;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:7,28:36:9:81,9,0
chrIX	437686	.	A	G	45.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.113;DP=36;Dels=0.00;FS=55.168;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=16.77;MQ0=5;MQRankSum=0.700;QD=1.28;ReadPosRankSum=1.964;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:8,28:36:9:78,9,0
chrIX	437710	.	G	A	105.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.578;DP=38;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.99;MQ0=17;MQRankSum=0.908;QD=2.77;ReadPosRankSum=1.239;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:1,37:38:15:138,15,0
chrIX	437745	.	G	A	107.26	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.50;MQ0=14;QD=3.25;SB=-5.714e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:15:140,15,0
chrIX	437755	.	C	T	51.97	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.49;MQ0=14;QD=1.79;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:9:84,9,0
chrIX	437810	.	T	C	49.97	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.33;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:9:82,9,0
chrIX	437819	.	T	C	50.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.50;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:9:83,9,0
chrIX	437821	.	T	C	49.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DP=6;Dels=0.00;FS=10.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.406;QD=8.33;ReadPosRankSum=1.537;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,3:6:9:82,9,0
chrIX	437828	.	C	T	54.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.727;QD=13.74;ReadPosRankSum=0.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,3:4:9:87,9,0
chrIX	437829	.	C	T	50.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.727;QD=12.74;ReadPosRankSum=0.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,3:4:9:83,9,0
chrIX	437840	.	C	T	78.51	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=11.22;SB=-2.926e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:12:111,12,0
chrIX	437853	.	A	C	72.51	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=10.36;SB=-2.926e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:12:105,12,0
chrIX	437889	.	G	A	108.26	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=13.53;SB=-3.014e+01	GT:AD:DP:GQ:PL	1/1:0,8:8:15:141,15,0
chrIX	437902	.	G	A	80.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=13.42;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:12:113,12,0
chrIX	437905	.	T	C	81.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=13.59;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:12:114,12,0
chrIX	437909	.	G	A	84.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=14.09;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:12:117,12,0
chrIX	437935	.	A	T	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.99;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chrIX	437939	.	C	A	56.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.99;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chrIX	437945	.	C	A	23.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.93;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:6:55,6,0
chrIX	437965	.	T	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.69;MQ0=0;QD=7.26;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:6:53,6,0
chrIX	437979	.	G	A	10.44	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=0;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.380;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:2,4:6:19:40,0,19
chrIX	437988	.	T	C	44.97	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=0;QD=7.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:9:77,9,0
chrIX	437994	.	T	C	43.97	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=0;QD=7.33;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:9:76,9,0
chrIX	438018	.	T	C	148.06	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=23.59;MQ0=0;QD=12.34;SB=-7.781e+01	GT:AD:DP:GQ:PL	1/1:1,11:12:21:181,21,0
chrIX	438138	.	C	T	95.26	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.68;MQ0=0;QD=15.88;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:15:128,15,0
chrIX	438147	.	G	A	42.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=0;QD=10.74;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:9:75,9,0
chrIX	438150	.	T	C	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.42;MQ0=0;QD=4.97;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:6:46,6,0
chrIX	438319	.	G	A	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:57,6,0
chrIX	438330	.	A	G	42.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.16;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:9:75,9,0
chrIX	438331	.	C	A	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.00;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:9:80,9,0
chrIX	438333	.	A	C	44.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.50;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:9:77,9,0
chrIX	438354	.	A	G	155.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.496;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.248;QD=11.08;ReadPosRankSum=0.992;SB=0.138	GT:AD:DP:GQ:PL	1/1:1,13:14:21:188,21,0
chrIX	438358	.	C	T	198.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.488;QD=14.14;ReadPosRankSum=0.744;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:1,13:14:27:231,27,0
chrIX	438374	.	G	T	226.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=14;Dels=0.00;FS=14.819;HaplotypeScore=3.6542;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;MQRankSum=1.868;QD=16.14;ReadPosRankSum=2.180;SB=0.492	GT:AD:DP:GQ:PL	1/1:3,11:14:27:259,27,0
chrIX	438387	.	A	G	237	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DP=19;Dels=0.00;FS=10.132;HaplotypeScore=4.9305;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;MQRankSum=0.839;QD=12.47;ReadPosRankSum=1.174;SB=-3.368e+01	GT:AD:DP:GQ:PL	1/1:3,16:19:30:270,30,0
chrIX	438388	.	G	C	284	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.274;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=4.9305;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;MQRankSum=1.004;QD=14.95;ReadPosRankSum=-1.004;SB=-9.384e+01	GT:AD:DP:GQ:PL	1/1:1,18:19:36:317,36,0
chrIX	438390	.	T	C	274	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;DP=20;Dels=0.00;FS=3.493;HaplotypeScore=5.7192;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;MQRankSum=-0.819;QD=13.70;ReadPosRankSum=0.693;SB=-9.495e+01	GT:AD:DP:GQ:PL	1/1:2,18:20:36:307,36,0
chrIX	438399	.	G	A	289	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.5682;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=1;QD=11.56;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,24:25:36:322,36,0
chrIX	438443	.	A	G	95.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DP=35;Dels=0.00;FS=15.178;HaplotypeScore=7.9032;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=1;MQRankSum=2.396;QD=2.71;ReadPosRankSum=2.108;SB=-1.790e+02	GT:AD:DP:GQ:PL	0/1:12,23:35:71:125,0,71
chrIX	438445	.	C	T	213	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=13.8214;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=1;QD=6.26;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:30:246,30,0
chrIX	438449	.	T	C	296	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=18.3190;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=1;MQRankSum=-0.907;QD=7.79;ReadPosRankSum=2.317;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:2,36:38:39:329,39,0
chrIX	438451	.	A	G	297	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=28.1553;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=1;QD=7.82;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:39:330,39,0
chrIX	438454	.	A	G	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DP=45;Dels=0.00;FS=10.864;HaplotypeScore=22.2373;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=1;MQRankSum=-0.797;QD=0.51;ReadPosRankSum=-0.180;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,13:45:53:53,0,207
chrIX	438456	.	T	A	85.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;DP=45;Dels=0.00;FS=21.852;HaplotypeScore=22.2284;MLEAC=1;MLEAF=0.500;MQ=26.10;MQ0=1;MQRankSum=2.393;QD=1.89;ReadPosRankSum=0.166;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:26,19:45:99:115,0,183
chrIX	438461	.	C	T	238.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.428;DP=49;Dels=0.00;FS=14.223;HaplotypeScore=11.5549;MLEAC=1;MLEAF=0.500;MQ=26.13;MQ0=1;MQRankSum=0.992;QD=4.86;ReadPosRankSum=1.250;SB=-1.860e+02	GT:AD:DP:GQ:PL	0/1:17,32:49:73:268,0,73
chrIX	438474	.	G	A	133.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.216;DP=56;Dels=0.00;FS=14.592;HaplotypeScore=18.3289;MLEAC=1;MLEAF=0.500;MQ=25.94;MQ0=1;MQRankSum=4.837;QD=2.38;ReadPosRankSum=0.862;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,23:56:99:163,0,255
chrIX	438479	.	A	T	158.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;DP=55;Dels=0.00;FS=11.913;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.08;MQ0=1;MQRankSum=2.624;QD=2.87;ReadPosRankSum=0.787;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,23:55:99:188,0,252
chrIX	438482	.	G	A	554	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=1;QD=10.07;SB=-9.901e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:69:587,69,0
chrIX	438493	.	T	C	87.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DP=54;Dels=0.00;FS=8.387;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=26.12;MQ0=0;MQRankSum=3.251;QD=1.61;ReadPosRankSum=4.899;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,20:54:99:117,0,366
chrIX	438499	.	C	T	402	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=14.36;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:48:435,48,0
chrIX	438505	.	A	G	108.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DP=26;Dels=0.00;FS=18.524;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=1.344;QD=4.15;ReadPosRankSum=2.503;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:10,16:26:99:138,0,160
chrIX	438514	.	C	T	61.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DP=23;Dels=0.00;FS=4.075;HaplotypeScore=13.1755;MLEAC=1;MLEAF=0.500;MQ=28.58;MQ0=0;MQRankSum=0.283;QD=2.65;ReadPosRankSum=1.228;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:9,14:23:91:91,0,151
chrIX	438526	.	A	G	47.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=15.5303;MLEAC=1;MLEAF=0.500;MQ=29.97;MQ0=0;MQRankSum=0.599;QD=1.62;ReadPosRankSum=0.276;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:16,13:29:77:77,0,311
chrIX	438527	.	C	T	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;DP=32;Dels=0.00;FS=3.010;HaplotypeScore=17.6411;MLEAC=1;MLEAF=0.500;MQ=29.88;MQ0=0;MQRankSum=-0.358;QD=1.44;ReadPosRankSum=-0.660;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:16,16:32:76:76,0,319
chrIX	438552	.	A	G	579	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.412;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;MQRankSum=-0.077;QD=13.16;ReadPosRankSum=4.579;SB=3.00	GT:AD:DP:GQ:PL	1/1:13,31:44:69:612,69,0
chrIX	438600	.	T	C	323.10	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.325;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=12.5928;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;MQRankSum=-2.425;QD=9.79;ReadPosRankSum=-2.196;SB=2.90	GT:AD:DP:GQ:PL	1/1:11,22:33:19:356,19,0
chrIX	438614	.	A	T	34.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=5.8785;MLEAC=1;MLEAF=0.500;MQ=24.98;MQ0=0;MQRankSum=-1.144;QD=1.21;ReadPosRankSum=-0.381;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,8:28:64:64,0,144
chrIX	438621	.	G	A	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.8670;MLEAC=1;MLEAF=0.500;MQ=24.52;MQ0=0;MQRankSum=-3.170;QD=1.70;ReadPosRankSum=-0.031;SB=-8.690e-03	GT:AD:DP:GQ:PL	0/1:12,11:23:30:69,0,30
chrIX	438622	.	G	T	104.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=4.8670;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=4.73;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,22:22:18:137,18,0
chrIX	438630	.	G	A	104.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=1.9650;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=6.94;SB=-1.418e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:18:137,18,0
chrIX	438636	.	T	G	15.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=4.8645;MLEAC=1;MLEAF=0.500;MQ=23.12;MQ0=0;QD=1.67;SB=11.16	GT:AD:DP:GQ:PL	1/1:0,7:9:6:46,6,0
chrIX	438638	.	C	G	39.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=4.8645;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=0;QD=4.44;SB=-9.474e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:72,9,0
chrIX	438663	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.27;MQ0=0;QD=1.51;SB=-1.740e+00	GT:AD:DP:GQ:PL	1/1:0,8:8:6:43,6,0
chrIX	438765	.	A	G	54.51	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=0;QD=6.06;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:87,12,0
chrIX	438773	.	C	T	30.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=1;MQRankSum=-0.815;QD=1.58;ReadPosRankSum=1.992;SB=-3.779e+01	GT:AD:DP:GQ:PL	0/1:12,7:19:60:60,0,105
chrIX	438783	.	C	A	92.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DP=35;Dels=0.00;FS=5.871;HaplotypeScore=7.8163;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=2;MQRankSum=-3.114;QD=2.63;ReadPosRankSum=1.508;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:25,10:35:99:122,0,196
chrIX	438797	.	C	T	76.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;DP=45;Dels=0.00;FS=5.084;HaplotypeScore=3.3394;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=2;MQRankSum=-3.858;QD=1.69;ReadPosRankSum=0.555;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:33,12:45:99:106,0,474
chrIX	438812	.	T	C	185.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=72;Dels=0.00;FS=23.923;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=2;MQRankSum=-3.865;QD=2.57;ReadPosRankSum=-1.664;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:50,22:72:99:215,0,662
chrIX	438831	.	A	T	668.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.132;DP=131;Dels=0.00;FS=2.280;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=2;MQRankSum=-0.924;QD=5.10;ReadPosRankSum=-3.189;SB=-4.170e+02	GT:AD:DP:GQ:PL	0/1:72,59:131:99:698,0,1171
chrIX	438856	.	G	A	3443.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.556;HaplotypeScore=10.7333;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=1;MQRankSum=1.581;QD=21.12;ReadPosRankSum=-0.161;SB=-1.859e+03	GT:AD:DP:GQ:PL	1/1:1,161:163:99:3443,387,0
chrIX	438878	.	T	A	3131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=163;Dels=0.00;FS=5.698;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=26.29;MQ0=0;MQRankSum=2.809;QD=19.21;ReadPosRankSum=2.945;SB=-1.665e+03	GT:AD:DP:GQ:PL	1/1:3,160:163:99:3164,348,0
chrIX	438915	.	C	T	611.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;DP=132;Dels=0.00;FS=0.659;HaplotypeScore=38.6486;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=0;MQRankSum=-3.300;QD=4.63;ReadPosRankSum=4.459;SB=-5.040e+02	GT:AD:DP:GQ:PL	0/1:55,77:132:99:641,0,907
chrIX	438925	.	G	A	162.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.993;DP=100;Dels=0.00;FS=10.203;HaplotypeScore=62.9765;MLEAC=1;MLEAF=0.500;MQ=24.35;MQ0=0;MQRankSum=1.447;QD=1.62;ReadPosRankSum=4.276;SB=-1.220e+02	GT:AD:DP:GQ:PL	0/1:64,36:100:99:192,0,814
chrIX	438930	.	G	C	549.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;DP=87;Dels=0.00;FS=2.014;HaplotypeScore=63.6889;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=-1.123;QD=6.31;ReadPosRankSum=4.944;SB=-3.930e+02	GT:AD:DP:GQ:PL	0/1:22,64:87:99:579,0,267
chrIX	438941	.	C	T	169.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;DP=65;Dels=0.00;FS=4.677;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.52;MQ0=0;MQRankSum=2.554;QD=2.60;ReadPosRankSum=-2.950;SB=-5.101e+01	GT:AD:DP:GQ:PL	0/1:52,12:65:99:199,0,395
chrIX	438947	.	G	A	30.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=62;Dels=0.00;FS=8.087;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=0;MQRankSum=2.278;QD=0.48;ReadPosRankSum=-0.340;SB=-4.007e+00	GT:AD:DP:GQ:PL	0/1:53,9:62:60:60,0,437
chrIX	438951	.	A	G	626	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.43;MQ0=0;QD=11.18;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:78:659,78,0
chrIX	438952	.	T	C	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;DP=56;Dels=0.00;FS=15.508;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.43;MQ0=0;MQRankSum=2.689;QD=0.41;ReadPosRankSum=2.530;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,6:56:53:53,0,445
chrIX	438953	.	A	G	28.01	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DP=56;Dels=0.00;FS=15.508;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.43;MQ0=0;MQRankSum=2.689;QD=0.50;ReadPosRankSum=2.583;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,6:56:58:58,0,439
chrIX	438969	.	A	G	87.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DP=51;Dels=0.00;FS=9.157;HaplotypeScore=6.1964;MLEAC=1;MLEAF=0.500;MQ=21.68;MQ0=0;MQRankSum=3.506;QD=1.71;ReadPosRankSum=3.162;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:43,8:51:99:117,0,358
chrIX	438972	.	G	A	259.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;DP=45;Dels=0.00;FS=2.716;HaplotypeScore=7.0905;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=0;MQRankSum=-0.569;QD=5.76;ReadPosRankSum=-0.768;SB=-9.401e+01	GT:AD:DP:GQ:PL	0/1:15,29:45:99:289,0,196
chrIX	438993	.	A	G	138.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;DP=25;Dels=0.00;FS=9.558;HaplotypeScore=14.6478;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=0;MQRankSum=-2.272;QD=5.52;ReadPosRankSum=1.232;SB=-7.501e+01	GT:AD:DP:GQ:PL	0/1:11,14:25:99:168,0,125
chrIX	438999	.	A	C	26.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;DP=21;Dels=0.00;FS=2.141;HaplotypeScore=17.5771;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=0;MQRankSum=0.702;QD=1.24;ReadPosRankSum=-1.445;SB=-3.007e+00	GT:AD:DP:GQ:PL	0/1:16,5:21:56:56,0,228
chrIX	439000	.	G	T	60.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=19;Dels=0.00;FS=4.561;HaplotypeScore=17.5771;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=0;MQRankSum=-2.164;QD=3.16;ReadPosRankSum=1.347;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:10,9:19:90:90,0,194
chrIX	439005	.	G	A	64.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;DP=20;Dels=0.00;FS=1.871;HaplotypeScore=14.6440;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=0;MQRankSum=-2.986;QD=3.20;ReadPosRankSum=1.928;SB=-5.101e+01	GT:AD:DP:GQ:PL	0/1:10,10:20:94:94,0,151
chrIX	439011	.	C	T	98.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.8548;MLEAC=1;MLEAF=0.500;MQ=22.23;MQ0=0;MQRankSum=-2.372;QD=5.77;ReadPosRankSum=2.055;SB=-6.601e+01	GT:AD:DP:GQ:PL	0/1:5,12:17:96:128,0,96
chrIX	439025	.	A	G	15.14	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DP=32;Dels=0.00;FS=2.318;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=18.96;MQ0=10;MQRankSum=0.955;QD=0.47;ReadPosRankSum=-1.055;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,3:32:45:45,0,186
chrIX	439044	.	T	C	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9157;MLEAC=1;MLEAF=0.500;MQ=16.75;MQ0=19;MQRankSum=0.973;QD=0.85;ReadPosRankSum=-2.141;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:35,6:41:65:65,0,186
chrIX	439056	.	T	G	92.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;DP=38;Dels=0.00;FS=2.098;HaplotypeScore=3.6778;MLEAC=1;MLEAF=0.500;MQ=16.90;MQ0=19;MQRankSum=-0.465;QD=2.42;ReadPosRankSum=1.141;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:26,12:38:44:122,0,44
chrIX	439072	.	A	T	15.14	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;DP=47;Dels=0.00;FS=6.898;HaplotypeScore=14.6087;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=20;MQRankSum=-2.304;QD=0.32;ReadPosRankSum=-0.612;SB=-2.101e+01	GT:AD:DP:GQ:PL	0/1:41,6:47:45:45,0,241
chrIX	439083	.	C	A	142.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=17.6539;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=20;MQRankSum=1.972;QD=3.09;ReadPosRankSum=0.000;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:31,15:46:99:172,0,116
chrIX	439084	.	G	T	145.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=15.7071;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=20;MQRankSum=0.854;QD=3.09;ReadPosRankSum=0.512;SB=-3.901e+01	GT:AD:DP:GQ:PL	0/1:32,15:47:99:175,0,139
chrIX	439100	.	A	G	340.64	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.087;DP=57;Dels=0.00;FS=28.537;HaplotypeScore=50.3232;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=20;MQRankSum=2.404;QD=5.98;ReadPosRankSum=-0.801;SB=-3.665e+01	GT:AD:DP:GQ:PL	1/1:22,34:57:11:373,11,0
chrIX	439118	.	G	T	115.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.596;DP=75;Dels=0.00;FS=64.362;HaplotypeScore=34.9837;MLEAC=1;MLEAF=0.500;MQ=20.49;MQ0=11;MQRankSum=2.045;QD=1.53;ReadPosRankSum=0.714;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,24:75:99:145,0,447
chrIX	439126	.	A	G	350.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183;DP=77;Dels=0.00;FS=83.873;HaplotypeScore=56.3256;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=6;MQRankSum=1.101;QD=4.55;ReadPosRankSum=1.075;SB=-2.422e+01	GT:AD:DP:GQ:PL	0/1:28,45:77:99:380,0,229
chrIX	439132	.	A	G	405.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;DP=78;Dels=0.00;FS=87.786;HaplotypeScore=61.3719;MLEAC=1;MLEAF=0.500;MQ=21.56;MQ0=1;MQRankSum=0.444;QD=5.19;ReadPosRankSum=-0.720;SB=-8.802e+01	GT:AD:DP:GQ:PL	0/1:20,57:78:99:435,0,107
chrIX	439149	.	G	A	146.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.562;DP=107;Dels=0.00;FS=72.631;HaplotypeScore=82.0023;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=1;MQRankSum=1.321;QD=1.36;ReadPosRankSum=0.200;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,34:107:99:176,0,715
chrIX	439158	.	T	G	1238	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.135;DP=108;Dels=0.00;FS=25.372;HaplotypeScore=112.4390;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=1;MQRankSum=0.318;QD=11.46;ReadPosRankSum=-0.887;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:6,102:108:99:1271,153,0
chrIX	439160	.	A	G	200.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;DP=115;Dels=0.00;FS=132.129;HaplotypeScore=111.2489;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=1;MQRankSum=-0.925;QD=1.74;ReadPosRankSum=1.993;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,26:115:99:230,0,759
chrIX	439163	.	A	T	886.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=100.2920;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=1;MQRankSum=-0.395;QD=7.57;ReadPosRankSum=-0.040;SB=-4.630e+02	GT:AD:DP:GQ:PL	0/1:19,90:117:51:916,0,51
chrIX	439169	.	G	A	284.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.539;DP=120;Dels=0.05;FS=8.306;HaplotypeScore=127.2398;MLEAC=1;MLEAF=0.500;MQ=23.65;MQ0=2;MQRankSum=4.142;QD=2.37;ReadPosRankSum=-0.351;SB=-9.601e+01	GT:AD:DP:GQ:PL	0/1:75,38:114:99:314,0,762
chrIX	439183	.	T	C	46.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.149;DP=134;Dels=0.00;FS=61.947;HaplotypeScore=96.2676;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=2;MQRankSum=-1.025;QD=0.34;ReadPosRankSum=0.862;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:111,23:134:76:76,0,996
chrIX	439186	.	C	T	715.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.079;DP=136;Dels=0.00;FS=5.369;HaplotypeScore=116.1093;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=2;MQRankSum=1.600;QD=5.26;ReadPosRankSum=5.069;SB=-4.070e+02	GT:AD:DP:GQ:PL	0/1:60,76:136:99:745,0,349
chrIX	439188	.	T	A	221.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;DP=136;Dels=0.00;FS=1.742;HaplotypeScore=108.3752;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=2;MQRankSum=3.885;QD=1.63;ReadPosRankSum=6.311;SB=-1.210e+02	GT:AD:DP:GQ:PL	0/1:83,34:136:99:251,0,650
chrIX	439202	.	T	C	867.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;DP=125;Dels=0.00;FS=6.289;HaplotypeScore=79.4301;MLEAC=1;MLEAF=0.500;MQ=23.41;MQ0=1;MQRankSum=0.527;QD=6.94;ReadPosRankSum=0.984;SB=-7.120e+02	GT:AD:DP:GQ:PL	0/1:22,103:125:56:897,0,56
chrIX	439208	.	C	T	600.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;DP=118;Dels=0.00;FS=1.549;HaplotypeScore=75.8873;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=2;MQRankSum=2.407;QD=5.08;ReadPosRankSum=-4.930;SB=-4.150e+02	GT:AD:DP:GQ:PL	0/1:48,70:118:99:630,0,349
chrIX	439219	.	G	T	234.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;DP=116;Dels=0.00;FS=24.277;HaplotypeScore=34.0021;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=2;MQRankSum=2.555;QD=2.02;ReadPosRankSum=-4.029;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:82,34:116:99:264,0,703
chrIX	439225	.	C	T	70.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;DP=117;Dels=0.00;FS=29.282;HaplotypeScore=49.2036;MLEAC=1;MLEAF=0.500;MQ=23.58;MQ0=2;MQRankSum=3.753;QD=0.60;ReadPosRankSum=-3.631;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,25:117:99:100,0,755
chrIX	439235	.	A	G	513.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;DP=85;Dels=0.00;FS=11.668;HaplotypeScore=111.1282;MLEAC=1;MLEAF=0.500;MQ=22.89;MQ0=2;MQRankSum=-1.252;QD=6.04;ReadPosRankSum=1.219;SB=-3.690e+02	GT:AD:DP:GQ:PL	0/1:19,66:85:65:543,0,65
chrIX	439239	.	G	A	187.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.879;DP=84;Dels=0.00;FS=5.915;HaplotypeScore=104.5059;MLEAC=1;MLEAF=0.500;MQ=22.99;MQ0=2;MQRankSum=-2.444;QD=2.23;ReadPosRankSum=0.281;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,31:84:99:217,0,387
chrIX	439241	.	T	C	178.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;DP=84;Dels=0.00;FS=5.738;HaplotypeScore=100.5355;MLEAC=1;MLEAF=0.500;MQ=22.62;MQ0=2;MQRankSum=2.171;QD=2.12;ReadPosRankSum=1.585;SB=-2.910e+02	GT:AD:DP:GQ:PL	0/1:46,38:84:99:208,0,381
chrIX	439275	.	G	A	201.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DP=56;Dels=0.00;FS=43.488;HaplotypeScore=8.8451;MLEAC=1;MLEAF=0.500;MQ=19.60;MQ0=7;MQRankSum=-0.263;QD=3.59;ReadPosRankSum=0.368;SB=-9.055e+01	GT:AD:DP:GQ:PL	0/1:20,36:56:70:231,0,70
chrIX	439278	.	A	G	334	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=53;Dels=0.00;FS=6.927;HaplotypeScore=7.0830;MLEAC=2;MLEAF=1.00;MQ=19.64;MQ0=7;MQRankSum=-1.320;QD=6.30;ReadPosRankSum=2.343;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:2,51:53:48:367,48,0
chrIX	439290	.	A	G	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;DP=52;Dels=0.00;FS=25.735;HaplotypeScore=4.6948;MLEAC=1;MLEAF=0.500;MQ=18.13;MQ0=11;MQRankSum=-0.680;QD=0.88;ReadPosRankSum=-0.215;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,14:52:76:76,0,129
chrIX	439323	.	A	G	71.27	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=40;Dels=0.00;FS=8.239;HaplotypeScore=1.8583;MLEAC=1;MLEAF=0.500;MQ=13.92;MQ0=15;MQRankSum=-0.451;QD=1.78;ReadPosRankSum=0.751;SB=-8.526e+01	GT:AD:DP:GQ:PL	0/1:2,38:40:9:101,0,9
chrIX	439331	.	C	T	85.26	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=12.49;MQ0=17;QD=2.19;SB=-7.914e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:15:118,15,0
chrIX	439381	.	T	C	48.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.435;DP=31;Dels=0.00;FS=2.737;HaplotypeScore=81.1419;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=9;MQRankSum=1.626;QD=1.58;ReadPosRankSum=-0.574;SB=2.03	GT:AD:DP:GQ:PL	1/1:28,3:31:9:81,9,0
chrIX	439392	.	G	A	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;DP=29;Dels=0.00;FS=26.010;HaplotypeScore=24.1280;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=8;MQRankSum=-1.388;QD=0.39;ReadPosRankSum=-2.553;SB=0.079	GT:AD:DP:GQ:PL	0/1:25,4:29:41:41,0,110
chrIX	439434	.	C	T	30.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.829;DP=28;Dels=0.00;FS=7.273;HaplotypeScore=5.7823;MLEAC=1;MLEAF=0.500;MQ=22.32;MQ0=1;MQRankSum=-0.846;QD=1.07;ReadPosRankSum=2.712;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:22,6:28:60:60,0,228
chrIX	439449	.	C	A	63.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=14;Dels=0.00;FS=6.803;HaplotypeScore=16.2508;MLEAC=1;MLEAF=0.500;MQ=20.54;MQ0=0;MQRankSum=2.007;QD=4.50;ReadPosRankSum=1.739;SB=-6.901e+01	GT:AD:DP:GQ:PL	0/1:6,8:14:60:93,0,60
chrIX	439455	.	G	C	33.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;DP=17;Dels=0.00;FS=18.543;HaplotypeScore=18.1976;MLEAC=1;MLEAF=0.500;MQ=18.68;MQ0=1;MQRankSum=0.540;QD=1.94;ReadPosRankSum=1.312;SB=-3.042e+00	GT:AD:DP:GQ:PL	0/1:10,4:17:63:63,0,69
chrIX	439458	.	T	C	56.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;DP=19;Dels=0.00;FS=12.797;HaplotypeScore=19.3046;MLEAC=1;MLEAF=0.500;MQ=19.89;MQ0=1;MQRankSum=0.053;QD=2.95;ReadPosRankSum=1.423;SB=-2.304e+01	GT:AD:DP:GQ:PL	0/1:14,5:19:64:86,0,64
chrIX	439463	.	T	G	33.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DP=18;Dels=0.00;FS=24.693;HaplotypeScore=12.4836;MLEAC=1;MLEAF=0.500;MQ=20.79;MQ0=1;MQRankSum=-0.927;QD=1.83;ReadPosRankSum=-0.049;SB=4.350e-03	GT:AD:DP:GQ:PL	0/1:7,11:18:63:63,0,107
chrIX	439465	.	A	G	34.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;DP=18;Dels=0.00;FS=24.693;HaplotypeScore=12.4836;MLEAC=1;MLEAF=0.500;MQ=20.79;MQ0=1;MQRankSum=-1.317;QD=1.89;ReadPosRankSum=-0.342;SB=4.350e-03	GT:AD:DP:GQ:PL	0/1:7,11:18:64:64,0,112
chrIX	439492	.	G	T	63.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127;DP=55;Dels=0.00;FS=16.882;HaplotypeScore=31.7164;MLEAC=1;MLEAF=0.500;MQ=22.52;MQ0=4;MQRankSum=0.569;QD=1.15;ReadPosRankSum=-0.929;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,19:55:93:93,0,269
chrIX	439505	.	G	C	73.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DP=62;Dels=0.00;FS=21.344;HaplotypeScore=31.8412;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=5;MQRankSum=1.155;QD=1.18;ReadPosRankSum=0.863;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:55,7:62:99:103,0,329
chrIX	439507	.	G	A	14.18	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;DP=65;Dels=0.00;FS=1.767;HaplotypeScore=45.0629;MLEAC=1;MLEAF=0.500;MQ=22.14;MQ0=5;MQRankSum=-0.387;QD=0.22;ReadPosRankSum=0.631;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,9:65:44:44,0,432
chrIX	439515	.	G	A	92.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;DP=76;Dels=0.00;FS=11.707;HaplotypeScore=47.9137;MLEAC=1;MLEAF=0.500;MQ=22.23;MQ0=7;MQRankSum=0.684;QD=1.21;ReadPosRankSum=-1.831;SB=-3.101e+01	GT:AD:DP:GQ:PL	0/1:56,20:76:99:122,0,393
chrIX	439517	.	G	A	78.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;DP=78;Dels=0.00;FS=8.476;HaplotypeScore=27.7306;MLEAC=1;MLEAF=0.500;MQ=23.19;MQ0=7;MQRankSum=1.122;QD=1.00;ReadPosRankSum=-1.576;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:61,17:78:99:108,0,435
chrIX	439542	.	A	G	57.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.626;DP=98;Dels=0.00;FS=17.849;HaplotypeScore=20.1586;MLEAC=1;MLEAF=0.500;MQ=24.43;MQ0=7;MQRankSum=0.267;QD=0.58;ReadPosRankSum=0.287;SB=-4.007e+00	GT:AD:DP:GQ:PL	0/1:79,18:98:87:87,0,823
chrIX	439556	.	T	A	150.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DP=95;Dels=0.00;FS=82.902;HaplotypeScore=57.0726;MLEAC=1;MLEAF=0.500;MQ=24.39;MQ0=6;MQRankSum=-0.277;QD=1.58;ReadPosRankSum=-3.464;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:58,36:95:99:180,0,715
chrIX	439574	.	A	G	207.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DP=66;Dels=0.00;FS=10.656;HaplotypeScore=7.8032;MLEAC=1;MLEAF=0.500;MQ=26.01;MQ0=3;MQRankSum=0.426;QD=3.14;ReadPosRankSum=0.116;SB=-5.901e+01	GT:AD:DP:GQ:PL	0/1:47,19:66:99:237,0,480
chrIX	439590	.	T	G	378.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=65;Dels=0.00;FS=49.664;HaplotypeScore=3.4894;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=2;MQRankSum=1.688;QD=5.82;ReadPosRankSum=-1.813;SB=-3.301e+01	GT:AD:DP:GQ:PL	0/1:38,27:65:99:408,0,349
chrIX	439604	.	A	G	158.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;DP=62;Dels=0.00;FS=2.896;HaplotypeScore=21.4694;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=5;MQRankSum=0.595;QD=2.55;ReadPosRankSum=2.335;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:46,16:62:99:188,0,391
chrIX	439608	.	T	C	136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;DP=57;Dels=0.00;FS=91.578;HaplotypeScore=33.8815;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=4;MQRankSum=2.310;QD=2.39;ReadPosRankSum=-3.843;SB=-2.042e+00	GT:AD:DP:GQ:PL	0/1:46,10:57:99:166,0,305
chrIX	439618	.	G	A	58.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.408;DP=46;Dels=0.00;FS=2.906;HaplotypeScore=28.9577;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=5;MQRankSum=-1.724;QD=1.26;ReadPosRankSum=-1.964;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,21:46:88:88,0,177
chrIX	439620	.	C	A	69.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.282;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=24.8198;MLEAC=1;MLEAF=0.500;MQ=15.76;MQ0=5;MQRankSum=-0.567;QD=1.73;ReadPosRankSum=-3.578;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:11,21:40:94:99,0,94
chrIX	439624	.	G	A	61.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=24.0311;MLEAC=1;MLEAF=0.500;MQ=15.60;MQ0=5;MQRankSum=0.742;QD=1.56;ReadPosRankSum=4.138;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,9:39:91:91,0,118
chrIX	439626	.	G	A	255	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=32.5032;MLEAC=2;MLEAF=1.00;MQ=15.64;MQ0=5;QD=6.37;SB=-7.612e-03	GT:AD:DP:GQ:PL	1/1:0,39:40:39:288,39,0
chrIX	439640	.	A	G	61.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=13.9340;MLEAC=1;MLEAF=0.500;MQ=15.41;MQ0=6;MQRankSum=1.493;QD=1.53;ReadPosRankSum=0.246;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,10:40:91:91,0,117
chrIX	439685	.	C	A	101.13	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.25;MQ0=5;QD=4.82;SB=-1.399e-01	GT:AD:DP:GQ:PL	1/1:0,21:21:18:134,18,0
chrIX	439718	.	G	A	14.21	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=11.6728;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=0;MQRankSum=1.300;QD=2.03;ReadPosRankSum=-1.300;SB=-3.971e-02	GT:AD:DP:GQ:PL	0/1:3,4:7:18:44,0,18
chrIX	439727	.	G	A	13.22	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=8.5837;MLEAC=1;MLEAF=0.500;MQ=24.66;MQ0=0;MQRankSum=1.920;QD=1.65;ReadPosRankSum=0.322;SB=-6.731e-03	GT:AD:DP:GQ:PL	0/1:5,3:8:40:43,0,40
chrIX	439728	.	A	G	76.51	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=8.5837;MLEAC=2;MLEAF=1.00;MQ=24.66;MQ0=0;MQRankSum=0.747;QD=9.56;ReadPosRankSum=0.747;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:1,7:8:12:109,12,0
chrIX	439739	.	A	G	75.75	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=1;MLEAF=0.500;MQ=24.35;MQ0=0;QD=7.57;SB=14.51	GT:AD:DP:GQ:PL	1/1:0,8:10:12:108,12,0
chrIX	439745	.	G	A	66.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=24.35;MQ0=0;MQRankSum=0.296;QD=6.61;ReadPosRankSum=0.296;SB=-1.126e-01	GT:AD:DP:GQ:PL	0/1:3,7:10:13:96,0,13
chrIX	439750	.	A	T	96.26	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=0;QD=9.63;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:129,15,0
chrIX	439767	.	A	G	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=7.7520;MLEAC=1;MLEAF=0.500;MQ=23.57;MQ0=0;MQRankSum=1.620;QD=3.00;ReadPosRankSum=1.466;SB=-6.692e-03	GT:AD:DP:GQ:PL	0/1:9,4:13:41:69,0,41
chrIX	439771	.	G	T	40.04	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=9.6988;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=0;MQRankSum=-0.382;QD=3.34;ReadPosRankSum=0.382;SB=-4.079e-02	GT:AD:DP:GQ:PL	0/1:3,8:12:18:70,0,18
chrIX	439772	.	A	G	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=9.6988;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=0;MQRankSum=-0.555;QD=3.25;ReadPosRankSum=0.185;SB=-6.688e-03	GT:AD:DP:GQ:PL	0/1:3,9:12:41:69,0,41
chrIX	439781	.	A	T	56.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=19.5018;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=0;MQRankSum=0.158;QD=5.18;ReadPosRankSum=1.107;SB=3.48	GT:AD:DP:GQ:PL	1/1:1,10:11:9:89,9,0
chrIX	439783	.	G	C	17.11	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=19.9202;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=1.214;QD=1.56;ReadPosRankSum=2.166;SB=-2.818e-02	GT:AD:DP:GQ:PL	0/1:7,3:11:20:47,0,20
chrIX	439784	.	G	A	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.825;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=19.9202;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=0;MQRankSum=1.408;QD=4.45;ReadPosRankSum=0.825;SB=2.03	GT:AD:DP:GQ:PL	1/1:5,6:11:9:81,9,0
chrIX	439786	.	T	C	50.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.825;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=21.8727;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=0;MQRankSum=-0.118;QD=4.63;ReadPosRankSum=0.118;SB=2.04	GT:AD:DP:GQ:PL	1/1:2,9:11:9:83,9,0
chrIX	439793	.	A	G	15.17	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=17.0013;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=0;MQRankSum=0.896;QD=1.38;ReadPosRankSum=1.246;SB=-3.355e-02	GT:AD:DP:GQ:PL	0/1:7,4:11:19:45,0,19
chrIX	439794	.	A	G	53.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=8.7537;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=0;QD=6.00;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:86,9,0
chrIX	439886	.	T	G	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=7.5669;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=0;MQRankSum=0.979;QD=1.30;ReadPosRankSum=0.196;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:13,4:17:52:52,0,107
chrM	13967	.	T	G	18398.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=5.944;DP=920;DS;Dels=0.00;FS=0.000;HaplotypeScore=19.2274;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.962;QD=20.00;ReadPosRankSum=5.730;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:12,907:920:99:18398,2243,0
chrM	13976	.	A	G	18578.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.699;DP=953;DS;Dels=0.00;FS=0.000;HaplotypeScore=82.4344;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.008;QD=19.49;ReadPosRankSum=-1.030;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,937:953:99:18578,2137,0
chrM	14205	.	T	A	19376.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=5.153;DP=1000;DS;Dels=0.00;FS=41.770;HaplotypeScore=78.6383;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.235;QD=19.38;ReadPosRankSum=5.263;SB=-8.975e+03	GT:AD:DP:GQ:PL	1/1:10,990:1000:99:19376,2234,0
chrM	14403	.	A	T	19972.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=4.495;DP=990;DS;Dels=0.00;FS=0.000;HaplotypeScore=39.8196;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.794;QD=20.17;ReadPosRankSum=5.121;SB=-1.830e+02	GT:AD:DP:GQ:PL	1/1:9,981:990:99:19972,2196,0
chrM	15973	.	C	T	2772	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.54;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2805,338,0
chrM	16561	.	C	T	22268.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.025;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=44.3978;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.659;QD=22.27;ReadPosRankSum=1.618;SB=-7.431e+03	GT:AD:DP:GQ:PL	1/1:1,998:1000:99:22268,2587,0
chrM	16711	.	T	C	14174.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.815;DP=978;DS;Dels=0.00;FS=20.291;HaplotypeScore=55.2816;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.719;QD=14.49;ReadPosRankSum=4.051;SB=-8.464e+03	GT:AD:DP:GQ:PL	1/1:7,971:978:99:14174,1701,0
chrM	16806	.	G	A	19057.01	filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=59.9428;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.06;SB=-6.214e+03	GT:AD:DP:GQ:PL	1/1:0,994:1000:99:19057,2219,0
chrM	17675	.	T	C	2132	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.1005;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.70;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2165,255,0
chrM	18456	.	G	A	17532.01	filter	AC=2;AF=1.00;AN=2;DP=845;DS;Dels=0.00;FS=0.000;HaplotypeScore=55.3864;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.75;SB=-6.817e+03	GT:AD:DP:GQ:PL	1/1:0,840:845:99:17532,1983,0
chrM	18940	.	G	A	14749.01	filter	AC=2;AF=1.00;AN=2;DP=719;Dels=0.00;FS=0.000;HaplotypeScore=20.9983;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.51;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,719:719:99:14749,1721,0
chrM	20212	.	T	A	90.26	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=8.21;SB=-9.901e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:123,15,0
chrM	20335	.	T	A	705	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.20;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:738,84,0
chrM	20407	.	T	C	13909.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=6.804;DP=556;Dels=0.00;FS=0.000;HaplotypeScore=78.0666;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.796;QD=25.02;ReadPosRankSum=7.412;SB=-2.401e+01	GT:AD:DP:GQ:PL	1/1:20,536:556:99:13909,1489,0
chrM	20525	.	A	G	20513.01	filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=138.5961;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.51;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,976:1000:99:20513,2590,0
chrM	20934	.	T	G	15481.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=859;DS;Dels=0.00;FS=0.000;HaplotypeScore=51.6377;MLEAC=2;MLEAF=1.00;MQ=40.81;MQ0=0;MQRankSum=-2.271;QD=18.02;ReadPosRankSum=0.286;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:2,850:859:99:15481,1942,0
chrM	20960	.	C	T	10835.01	filter	AC=2;AF=1.00;AN=2;DP=682;DS;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=15.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,665:682:99:10835,1402,0
chrM	22604	.	G	A	68.51	PASS	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.13;SB=-2.155e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:12:101,12,0
chrM	22979	.	A	T	32.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=0;MQRankSum=0.198;QD=4.57;ReadPosRankSum=0.198;SB=-5.836e-03	GT:AD:DP:GQ:PL	0/1:2,5:7:35:62,0,35
chrM	26269	.	A	T	917	filter	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;QD=8.34;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:950,99,0
chrM	26278	.	T	C	1117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.602;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.1402;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=0.369;QD=10.74;ReadPosRankSum=2.855;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:3,101:104:99:1150,123,0
chrM	26386	.	T	C	2902	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.59;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2935,336,0
chrM	26539	.	C	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2320;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=15.39;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1449,165,0
chrM	26570	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=1.899;QD=17.07;ReadPosRankSum=2.392;SB=-7.201e+01	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1484,183,0
chrM	26571	.	A	C	1572	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.71;SB=-7.301e+01	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1605,186,0
chrM	26581	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=12.59;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1103,143,0
chrM	26705	.	A	T	1363	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.0890;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.244;QD=17.47;ReadPosRankSum=1.688;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1396,153,0
chrM	28837	.	C	T	9648.01	filter	AC=2;AF=1.00;AN=2;DP=400;Dels=0.00;FS=0.000;HaplotypeScore=21.3395;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=24.12;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,400:400:99:9648,1101,0
chrM	29015	.	T	A	9365.01	filter	AC=2;AF=1.00;AN=2;DP=510;Dels=0.00;FS=0.000;HaplotypeScore=8.7240;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.36;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,509:510:99:9365,1065,0
chrM	29017	.	C	T	8701.01	filter	AC=2;AF=1.00;AN=2;DP=522;Dels=0.00;FS=0.000;HaplotypeScore=4.5633;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=16.67;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,516:522:99:8701,1080,0
chrM	29170	.	C	T	7018.01	filter	AC=2;AF=1.00;AN=2;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=8.3905;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=20.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,340:340:99:7018,777,0
chrM	29179	.	G	T	7091.01	filter	AC=2;AF=1.00;AN=2;DP=365;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=19.43;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,359:365:99:7091,801,0
chrM	29200	.	C	T	7482.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=377;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.85;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,377:377:99:7482,805,0
chrM	29203	.	T	C	6830.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=370;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.46;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,370:370:99:6830,812,0
chrM	29206	.	G	A	5463.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.708;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.044;QD=18.71;ReadPosRankSum=-1.103;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,291:292:99:5463,601,0
chrM	29207	.	G	T	5246.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.7834;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.97;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,292:292:99:5246,629,0
chrM	29208	.	G	C	5506.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.7834;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.86;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,292:292:99:5506,633,0
chrM	29209	.	A	T	5654.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=292;Dels=0.00;FS=0.000;HaplotypeScore=2.7834;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,292:292:99:5654,630,0
chrM	29215	.	C	T	5661.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=2.7834;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=19.06;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,297:297:99:5661,633,0
chrM	29218	.	G	A	5478.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.44;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,297:297:99:5478,633,0
chrM	29219	.	G	C	5468.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.41;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,297:297:99:5468,633,0
chrM	29220	.	C	T	5542.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.66;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,297:297:99:5542,630,0
chrM	29224	.	T	C	5531.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=298;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.56;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,298:298:99:5531,630,0
chrM	29239	.	T	C	4760.01	filter	AC=2;AF=1.00;AN=2;DP=260;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.31;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,260:260:99:4760,546,0
chrM	29249	.	G	A	3702.01	filter	AC=2;AF=1.00;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.90;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,219:219:99:3702,440,0
chrM	29252	.	G	T	3042	filter	AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.84;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,192:192:99:3075,345,0
chrM	31158	.	T	C	69.51	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=17.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:12:102,12,0
chrM	34945	.	C	G	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.94;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
chrM	37871	.	T	A	98.26	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.38;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:15:131,15,0
chrM	37968	.	A	G	728	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,31:32:87:761,87,0
chrM	38226	.	T	C	681	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=20.03;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:87:714,87,0
chrM	38370	.	A	G	553	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=15.36;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:75:586,75,0
chrM	38442	.	T	A	37.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=9.49;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:9:70,9,0
chrM	38452	.	T	A	44.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=11.24;SB=-2.301e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:9:77,9,0
chrM	41630	.	A	T	3008	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.26;SB=-2.301e+01	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3041,360,0
chrM	41727	.	C	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3631;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=18.94;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1662,186,0
chrM	41832	.	G	A	1422	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.61;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1455,171,0
chrM	41882	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4964;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.66;SB=-1.000e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2078,240,0
chrM	41923	.	G	A	2510	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.7844;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.92;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2543,291,0
chrM	43686	.	T	A	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chrM	74051	.	T	C	20738.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=6.565;DP=1000;DS;Dels=0.00;FS=26.727;HaplotypeScore=26.7728;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=3.580;QD=20.74;ReadPosRankSum=6.785;SB=-8.483e+03	GT:AD:DP:GQ:PL	1/1:16,982:1000:99:20738,2387,0
chrM	74225	.	T	A	20620.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.970;DP=900;DS;Dels=0.00;FS=2.539;HaplotypeScore=22.3520;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;MQRankSum=-0.013;QD=22.91;ReadPosRankSum=2.912;SB=-8.387e+03	GT:AD:DP:GQ:PL	1/1:3,897:900:99:20620,2442,0
chrM	74327	.	T	C	15277.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.508;DP=822;Dels=0.00;FS=0.000;HaplotypeScore=30.9098;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;MQRankSum=1.485;QD=18.59;ReadPosRankSum=2.267;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:2,807:822:99:15277,1874,0
chrM	74381	.	T	C	11824.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=974;DS;Dels=0.00;FS=0.000;HaplotypeScore=21.7047;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=12.14;SB=-1.490e+02	GT:AD:DP:GQ:PL	1/1:0,972:974:99:11824,1573,0
chrM	74384	.	T	A	19624.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=958;DS;Dels=0.00;FS=0.000;HaplotypeScore=9.0852;MLEAC=2;MLEAF=1.00;MQ=30.49;MQ0=0;QD=20.48;SB=-1.460e+02	GT:AD:DP:GQ:PL	1/1:0,957:958:99:19624,2247,0
chrM	74390	.	T	C	17484.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=950;DS;Dels=0.00;FS=0.000;HaplotypeScore=7.2615;MLEAC=2;MLEAF=1.00;MQ=29.64;MQ0=0;QD=18.40;SB=-9.101e+01	GT:AD:DP:GQ:PL	1/1:0,949:950:99:17484,2138,0
chrM	74405	.	C	T	17453.01	filter	AC=2;AF=1.00;AN=2;DP=909;DS;Dels=0.00;FS=0.000;HaplotypeScore=8.3225;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=19.20;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,909:909:99:17453,1968,0
chrM	74415	.	G	C	15084.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=863;DS;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=17.48;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,862:863:99:15084,1885,0
chrM	74416	.	C	A	16222.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=863;DS;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=29.76;MQ0=0;QD=18.80;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,862:863:99:16222,1918,0
chrM	74420	.	T	C	16972.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=2.8960;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=16.97;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,1000:1000:99:16972,1976,0
chrM	74423	.	T	A	16516.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=2.9093;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=16.52;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,1000:1000:99:16516,1760,0
chrM	74441	.	T	A	448	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=632.9850;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=0.45;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,1000:1000:54:481,54,0
chrM	74447	.	A	C	7526.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=3.5362;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=0;QD=7.53;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,1000:1000:99:7526,951,0
chrM	74450	.	T	C	7246.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=28.97;MQ0=0;QD=7.25;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,1000:1000:99:7246,921,0
chrM	74462	.	G	A	7139.01	filter	AC=2;AF=1.00;AN=2;DP=991;DS;Dels=0.00;FS=0.000;HaplotypeScore=2.7720;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;QD=7.20;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,991:991:99:7139,848,0
chrM	74465	.	C	T	6354.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.218;DP=978;DS;Dels=0.00;FS=0.000;HaplotypeScore=2.7720;MLEAC=2;MLEAF=1.00;MQ=29.06;MQ0=0;MQRankSum=-0.349;QD=6.50;ReadPosRankSum=0.718;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,976:978:99:6354,813,0
chrM	74521	.	T	A	3035	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.705;DP=258;DS;Dels=0.00;FS=0.000;HaplotypeScore=11.8412;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=0;MQRankSum=1.571;QD=11.76;ReadPosRankSum=1.678;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,257:258:99:3068,363,0
chrM	74522	.	T	A	3065	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=257;DS;Dels=0.00;FS=0.000;HaplotypeScore=6.8745;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=0;MQRankSum=0.937;QD=11.93;ReadPosRankSum=1.166;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,256:257:99:3098,366,0
chrM	74524	.	C	T	3287.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=257;DS;Dels=0.00;FS=0.000;HaplotypeScore=6.8913;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=1.433;QD=12.79;ReadPosRankSum=0.618;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,254:257:99:3287,366,0
chrM	74527	.	A	G	3406.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;DP=257;DS;Dels=0.00;FS=0.000;HaplotypeScore=12.8244;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=0.034;QD=13.25;ReadPosRankSum=-0.427;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,254:257:99:3406,366,0
chrM	74537	.	T	C	1438	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.912;DP=127;DS;Dels=0.01;FS=0.000;HaplotypeScore=18.7477;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=-0.597;QD=11.32;ReadPosRankSum=-2.643;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:9,117:126:99:1471,174,0
chrM	74545	.	T	A	182.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.897;DP=59;DS;Dels=0.00;FS=0.000;HaplotypeScore=10.0359;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;MQRankSum=2.026;QD=3.08;ReadPosRankSum=-1.716;SB=2.99	GT:AD:DP:GQ:PL	1/1:8,51:59:27:215,27,0
chrM	74550	.	A	T	36.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=46;DS;Dels=0.00;FS=0.000;HaplotypeScore=33.7678;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;MQRankSum=2.410;QD=0.80;ReadPosRankSum=0.306;SB=2.03	GT:AD:DP:GQ:PL	1/1:10,36:46:9:69,9,0
chrM	74551	.	A	T	36.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.797;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=33.0700;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=-1.286;QD=0.84;ReadPosRankSum=1.613;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:4,40:44:9:69,9,0
chrM	79131	.	A	T	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=7.45;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:46,6,0
chrM	79281	.	T	A	21738.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=8.624;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=113.0518;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.660;QD=21.74;ReadPosRankSum=8.853;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:28,972:1000:99:21738,2642,0
chrM	79752	.	T	C	18959.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=50.7413;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.239;QD=18.96;ReadPosRankSum=1.661;SB=-2.871e+03	GT:AD:DP:GQ:PL	1/1:2,969:1000:99:18959,2180,0
chrM	79800	.	C	T	17153.01	filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=97.8579;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.15;SB=-1.445e+03	GT:AD:DP:GQ:PL	1/1:0,973:1000:99:17153,1932,0
chrM	80001	.	C	A	15759.01	filter	AC=2;AF=1.00;AN=2;DP=786;DS;Dels=0.00;FS=0.000;HaplotypeScore=30.9472;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,786:786:99:15759,1800,0
chrV	414	.	G	A	89.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=71;Dels=0.00;FS=1.814;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.45;MQ0=30;MQRankSum=1.464;QD=1.25;ReadPosRankSum=0.378;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:61,10:71:99:119,0,337
chrV	417	.	T	C	89.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;DP=72;Dels=0.00;FS=1.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.11;MQ0=32;MQRankSum=1.572;QD=1.24;ReadPosRankSum=0.423;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:62,10:72:99:119,0,316
chrV	441	.	C	T	111.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;DP=89;Dels=0.00;FS=1.792;HaplotypeScore=6.5837;MLEAC=1;MLEAF=0.500;MQ=12.28;MQ0=61;MQRankSum=-0.162;QD=1.25;ReadPosRankSum=0.348;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:57,31:89:99:141,0,118
chrV	450	.	C	T	108.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=100;Dels=0.00;FS=1.973;HaplotypeScore=8.1610;MLEAC=1;MLEAF=0.500;MQ=11.53;MQ0=71;MQRankSum=1.488;QD=1.08;ReadPosRankSum=2.464;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:85,15:100:99:138,0,116
chrV	468	.	A	G	116.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092;DP=111;Dels=0.00;FS=2.066;HaplotypeScore=2.5352;MLEAC=1;MLEAF=0.500;MQ=9.08;MQ0=87;MQRankSum=2.358;QD=1.05;ReadPosRankSum=0.337;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:94,16:111:29:146,0,29
chrV	716	.	C	G	39.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.603;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.13;MQ0=102;MQRankSum=1.439;QD=0.31;ReadPosRankSum=-3.644;SB=-7.889e-03	GT:AD:DP:GQ:PL	0/1:117,9:126:32:69,0,32
chrV	729	.	T	C	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=9.55;MQ0=79;MQRankSum=1.031;QD=0.29;ReadPosRankSum=-0.101;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:99,13:112:63:63,0,83
chrV	737	.	A	C	56.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=10.19;MQ0=69;MQRankSum=1.038;QD=0.53;ReadPosRankSum=2.208;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,15:105:77:86,0,77
chrV	776	.	T	C	24.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987;DP=79;Dels=0.00;FS=2.556;HaplotypeScore=20.1311;MLEAC=1;MLEAF=0.500;MQ=12.67;MQ0=43;MQRankSum=-0.514;QD=0.30;ReadPosRankSum=-0.552;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,9:79:54:54,0,154
chrV	780	.	T	C	34.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.311;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.7470;MLEAC=1;MLEAF=0.500;MQ=12.43;MQ0=47;MQRankSum=2.593;QD=0.40;ReadPosRankSum=0.716;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,19:84:64:64,0,150
chrV	813	.	T	C	47.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;DP=105;Dels=0.00;FS=2.566;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=8.84;MQ0=80;MQRankSum=2.322;QD=0.45;ReadPosRankSum=1.623;SB=-7.065e-03	GT:AD:DP:GQ:PL	0/1:85,20:105:36:77,0,36
chrV	847	.	T	A	39.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.866;DP=143;Dels=0.00;FS=3.310;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=4.79;MQ0=132;MQRankSum=2.383;QD=0.28;ReadPosRankSum=1.568;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:139,4:143:9:72,9,0
chrV	1125	.	C	T	46.97	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.42;MQ0=11;QD=2.61;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:11,7:18:9:79,9,0
chrV	1133	.	T	G	68.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=1;MQRankSum=1.381;QD=4.89;ReadPosRankSum=2.927;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:5,8:14:12:101,12,0
chrV	1554	.	G	A	207.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DP=51;Dels=0.00;FS=17.321;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=6;MQRankSum=-0.590;QD=4.06;ReadPosRankSum=3.238;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,18:51:99:237,0,339
chrV	1563	.	A	C	218.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;DP=42;Dels=0.00;FS=15.367;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=25.98;MQ0=4;MQRankSum=0.030;QD=5.19;ReadPosRankSum=2.449;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:26,16:42:99:248,0,253
chrV	1738	.	A	G	51.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.13;MQ0=2;MQRankSum=-0.158;QD=4.00;ReadPosRankSum=1.423;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:1,12:13:9:84,9,0
chrV	1755	.	G	A	54.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;FS=7.830;HaplotypeScore=3.5261;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=0;MQRankSum=1.625;QD=3.60;ReadPosRankSum=1.739;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:6,8:15:76:84,0,76
chrV	1762	.	A	G	44.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=6.6808;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=1;MQRankSum=0.112;QD=1.83;ReadPosRankSum=-0.112;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:17,7:24:74:74,0,113
chrV	1769	.	T	C	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=29;Dels=0.00;FS=16.251;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=20.55;MQ0=1;MQRankSum=1.484;QD=1.48;ReadPosRankSum=0.868;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:23,6:29:73:73,0,107
chrV	1779	.	A	C	77.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.479;DP=52;Dels=0.00;FS=37.559;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.87;MQ0=5;MQRankSum=0.033;QD=1.48;ReadPosRankSum=-1.875;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,22:52:99:107,0,151
chrV	1815	.	C	A,T	179.01	filter	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.752;DP=104;Dels=0.00;FS=33.526;HaplotypeScore=6.2211;MLEAC=1,1;MLEAF=0.500,0.500;MQ=14.77;MQ0=38;MQRankSum=3.011;QD=1.72;ReadPosRankSum=-0.528;SB=-2.584e+01	GT:AD:DP:GQ:PL	1/2:46,16,41:104:83:239,83,125,102,0,147
chrV	1819	.	T	C	111.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.002;DP=104;Dels=0.00;FS=23.960;HaplotypeScore=19.6515;MLEAC=1;MLEAF=0.500;MQ=14.77;MQ0=38;MQRankSum=1.000;QD=1.07;ReadPosRankSum=-1.231;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,47:104:99:141,0,213
chrV	1851	.	A	C	71.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;DP=116;Dels=0.00;FS=26.668;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=11.88;MQ0=63;MQRankSum=-1.183;QD=0.61;ReadPosRankSum=1.361;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:47,48:116:81:101,0,81
chrV	1891	.	C	T	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=4.19;MQ0=223;QD=0.09;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:213,17:230:6:53,6,0
chrV	2625	.	A	G	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.07;MQ0=103;MQRankSum=2.100;QD=0.10;ReadPosRankSum=0.274;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:115,2:117:6:43,6,0
chrV	2631	.	C	T	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.05;MQ0=104;MQRankSum=2.100;QD=0.10;ReadPosRankSum=-0.822;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:116,2:118:6:43,6,0
chrV	2634	.	T	C	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.917;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.03;MQ0=105;MQRankSum=2.100;QD=0.10;ReadPosRankSum=-0.091;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:117,2:119:6:43,6,0
chrV	2663	.	C	G	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.480;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=3.88;MQ0=114;MQRankSum=2.073;QD=0.09;ReadPosRankSum=0.099;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:125,2:127:6:43,6,0
chrV	2985	.	A	G	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.59;MQ0=87;MQRankSum=1.733;QD=0.12;ReadPosRankSum=-0.898;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:94,2:97:6:43,6,0
chrV	2997	.	A	G	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.480;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.39;MQ0=104;MQRankSum=1.733;QD=0.11;ReadPosRankSum=-0.898;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:112,2:114:6:43,6,0
chrV	3000	.	A	G	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.239;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.33;MQ0=110;MQRankSum=2.003;QD=0.10;ReadPosRankSum=-0.589;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:118,2:121:6:43,6,0
chrV	3029	.	G	A	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.537;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.07;MQ0=144;MQRankSum=2.041;QD=0.08;ReadPosRankSum=0.967;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:153,3:156:6:43,6,0
chrV	3045	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.826;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=1.99;MQ0=156;MQRankSum=2.041;QD=0.07;ReadPosRankSum=0.107;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:165,3:168:6:43,6,0
chrV	3048	.	A	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.256;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=1.99;MQ0=157;MQRankSum=2.041;QD=0.07;ReadPosRankSum=0.107;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:166,3:169:6:43,6,0
chrV	6397	.	C	T	82.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=12.7590;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=2.95;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,28:28:12:115,12,0
chrV	6400	.	C	T	39.08	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=12.7590;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=1.265;QD=1.35;ReadPosRankSum=2.180;SB=-7.465e-02	GT:AD:DP:GQ:PL	0/1:6,23:29:15:69,0,15
chrV	6405	.	A	C	37.05	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.775;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=9.9251;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=0;MQRankSum=0.125;QD=1.20;ReadPosRankSum=1.875;SB=-4.963e-02	GT:AD:DP:GQ:PL	0/1:6,25:31:17:67,0,17
chrV	6414	.	T	C	99.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.4361;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=1.523;QD=3.01;ReadPosRankSum=1.628;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:1,32:33:15:132,15,0
chrV	6444	.	C	T	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.232;DP=37;Dels=0.00;FS=18.112;HaplotypeScore=29.1431;MLEAC=1;MLEAF=0.500;MQ=29.18;MQ0=0;MQRankSum=-1.351;QD=1.16;ReadPosRankSum=-1.214;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:10,27:37:73:73,0,101
chrV	6445	.	C	T	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;DP=37;Dels=0.00;FS=16.729;HaplotypeScore=34.9672;MLEAC=1;MLEAF=0.500;MQ=29.18;MQ0=0;MQRankSum=-2.176;QD=0.44;ReadPosRankSum=-1.279;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:11,26:37:46:46,0,125
chrV	6460	.	A	T	30.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;DP=27;Dels=0.00;FS=14.564;HaplotypeScore=22.5794;MLEAC=1;MLEAF=0.500;MQ=29.64;MQ0=0;MQRankSum=1.855;QD=1.11;ReadPosRankSum=2.524;SB=-2.000e+01	GT:AD:DP:GQ:PL	0/1:8,5:27:60:60,0,64
chrV	6490	.	T	C	94.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.275;DP=23;Dels=0.00;FS=19.472;HaplotypeScore=8.9325;MLEAC=1;MLEAF=0.500;MQ=29.75;MQ0=0;MQRankSum=1.155;QD=4.10;ReadPosRankSum=-0.175;SB=-1.531e+01	GT:AD:DP:GQ:PL	0/1:17,6:23:9:124,0,9
chrV	6566	.	A	C	70.51	PASS	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;QD=17.63;SB=-2.755e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:12:103,12,0
chrV	6569	.	C	T	72.51	PASS	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;QD=18.13;SB=-2.655e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:12:105,12,0
chrV	6586	.	A	G	66.51	PASS	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=0;QD=16.63;SB=-2.155e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
chrV	6594	.	T	C	94.26	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=15.71;SB=-2.476e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:15:127,15,0
chrV	6600	.	A	G	118.13	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=19.69;SB=-2.788e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:18:151,18,0
chrV	6759	.	G	A	181.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;DP=53;Dels=0.00;FS=1.440;HaplotypeScore=10.3683;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=0;MQRankSum=-0.148;QD=3.42;ReadPosRankSum=0.307;SB=-6.912e+01	GT:AD:DP:GQ:PL	1/1:38,12:53:5:212,5,0
chrV	6787	.	C	T	275.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=6.8011;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;MQRankSum=2.113;QD=11.47;ReadPosRankSum=0.400;SB=-1.378e+02	GT:AD:DP:GQ:PL	1/1:2,20:24:17:308,17,0
chrV	6837	.	T	A	137.13	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.71;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,24:24:18:170,18,0
chrV	6920	.	C	T	144.13	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.97;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,29:29:18:177,18,0
chrV	6921	.	G	A	112.13	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.87;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,29:29:18:145,18,0
chrV	6939	.	G	A	108.26	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.01;SB=-2.728e-01	GT:AD:DP:GQ:PL	1/1:0,18:18:15:141,15,0
chrV	6996	.	A	G	50.97	PASS	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=10.19;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,5:5:9:83,9,0
chrV	7001	.	T	C	47.97	filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=6.00;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:9:80,9,0
chrV	7021	.	A	G	165.03	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.34;MQ0=0;QD=8.25;SB=-4.095e-02	GT:AD:DP:GQ:PL	1/1:0,20:20:24:198,24,0
chrV	7036	.	C	T	269	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=8.15;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:33:302,33,0
chrV	7047	.	C	T	368	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=9.68;SB=-9.901e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:45:401,45,0
chrV	7063	.	A	G	370	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.08;MQ0=0;QD=8.60;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:45:403,45,0
chrV	7069	.	T	A	370	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=8.04;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:45:403,45,0
chrV	7235	.	C	A	2362	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9848;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=22.07;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2395,249,0
chrV	7546	.	T	C	1772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.953;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.465;QD=21.61;ReadPosRankSum=1.690;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1805,201,0
chrV	7581	.	T	C	1890	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.72;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1923,210,0
chrV	7660	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9510;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.30;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2063,225,0
chrV	7846	.	A	C	1293	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.85;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1326,147,0
chrV	7941	.	A	G	1582	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.28;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1615,180,0
chrV	8095	.	C	T	2318	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.07;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2351,261,0
chrV	8258	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.04;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1245,138,0
chrV	8344	.	G	A	1786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.4769;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.444;QD=22.05;ReadPosRankSum=-0.311;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1819,195,0
chrV	8932	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.47;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1466,165,0
chrV	8946	.	C	T	1541	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.82;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1574,168,0
chrV	9542	.	T	C	2970	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=146;Dels=0.00;FS=7.036;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.735;QD=20.34;ReadPosRankSum=2.415;SB=-1.604e+03	GT:AD:DP:GQ:PL	1/1:2,139:146:99:3003,336,0
chrV	9859	.	G	A	2514	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.05;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2547,276,0
chrV	9894	.	A	G	2395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.295;QD=19.63;ReadPosRankSum=1.703;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:1,119:122:99:2428,273,0
chrV	9970	.	T	G	3007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=140;Dels=0.00;FS=3.027;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.187;QD=21.48;ReadPosRankSum=2.414;SB=-1.675e+03	GT:AD:DP:GQ:PL	1/1:2,136:140:99:3040,336,0
chrV	10202	.	A	T	2214	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.13;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2247,249,0
chrV	10621	.	T	C	1959	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.78;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1992,222,0
chrV	10653	.	T	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.41;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1953,210,0
chrV	10700	.	T	A	1888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.217;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-1.732;QD=21.95;ReadPosRankSum=1.692;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1921,213,0
chrV	10731	.	C	T	1790	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.57;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1823,195,0
chrV	10779	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.39;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1494,171,0
chrV	10946	.	T	C	1714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=7.884;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.415;QD=19.93;ReadPosRankSum=2.393;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1747,195,0
chrV	11049	.	T	C	1891	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.70;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,88:96:99:1924,222,0
chrV	11100	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.44;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1768,195,0
chrV	11186	.	T	C	2152	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.96;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2185,240,0
chrV	11195	.	T	G	2328	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.79;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2361,264,0
chrV	11230	.	T	G	2046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.118;QD=19.67;ReadPosRankSum=1.698;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,102:104:99:2079,231,0
chrV	11351	.	T	C	1691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=9.719;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.269;QD=21.41;ReadPosRankSum=2.860;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1724,192,0
chrV	11370	.	C	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.55;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1865,207,0
chrV	11439	.	C	G	2691	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5903;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.86;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:0,127:129:99:2724,306,0
chrV	11496	.	C	T	4101.01	PASS	AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=13.5379;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.40;SB=-2.387e+03	GT:AD:DP:GQ:PL	1/1:0,201:201:99:4101,447,0
chrV	11575	.	A	G	3384.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.848;DP=153;Dels=0.00;FS=44.888;HaplotypeScore=15.7042;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.336;QD=22.12;ReadPosRankSum=4.981;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:9,143:153:99:3384,375,0
chrV	11741	.	G	A	2824	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.76;SB=-1.634e+03	GT:AD:DP:GQ:PL	1/1:0,132:136:99:2857,303,0
chrV	11756	.	C	T	3230.05	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.84;SB=-1.846e+03	GT:AD:DP:GQ:PL	1/1:0,153:155:99:3263,357,0
chrV	11785	.	G	T	3142	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.40;SB=-1.862e+03	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3175,348,0
chrV	11817	.	C	T	2495	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.65;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2528,288,0
chrV	11847	.	T	G	2129	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.51;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2162,243,0
chrV	12024	.	G	A	1929	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=16.92;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1962,210,0
chrV	12028	.	A	C	1883	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.44;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1916,213,0
chrV	12036	.	C	A	1596	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=14.92;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:1629,174,0
chrV	12071	.	A	C	2285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.2269;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.320;QD=15.87;ReadPosRankSum=1.307;SB=-1.611e+03	GT:AD:DP:GQ:PL	1/1:2,140:144:99:2318,258,0
chrV	12186	.	G	A	2115	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=21.36;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2148,228,0
chrV	12215	.	T	C	2207	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=1.099;QD=20.82;ReadPosRankSum=1.666;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:1,103:106:99:2240,249,0
chrV	12258	.	A	C	2262	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.94;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2295,258,0
chrV	12309	.	T	C	2049	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.70;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2082,228,0
chrV	12413	.	A	T	2845	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.71;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2878,315,0
chrV	12511	.	T	A	2595	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;MQRankSum=0.698;QD=19.37;ReadPosRankSum=1.655;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:2628,291,0
chrV	12521	.	T	C	2602	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=18.59;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:2635,294,0
chrV	12532	.	C	T	2408	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=17.97;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2441,258,0
chrV	12571	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;QD=11.87;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:1363,147,0
chrV	12600	.	C	T	899	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=9.36;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:932,105,0
chrV	12612	.	C	T	747	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=56.4595;MLEAC=2;MLEAF=1.00;MQ=31.35;MQ0=0;QD=10.09;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:84:780,84,0
chrV	12625	.	G	A	828	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.81;MQ0=0;QD=11.04;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:93:861,93,0
chrV	12629	.	G	A	821	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.51;MQ0=0;QD=11.25;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:93:854,93,0
chrV	12869	.	C	T	3084	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=22.19;SB=-1.589e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3117,336,0
chrV	12937	.	C	T	1709	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=21.63;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1742,186,0
chrV	13004	.	A	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=48.1476;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=19.62;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1171,132,0
chrV	13167	.	T	G	2650	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.54;SB=-1.466e+03	GT:AD:DP:GQ:PL	1/1:0,127:129:99:2683,300,0
chrV	13307	.	A	G	2728	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=4.664;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.068;QD=22.55;ReadPosRankSum=1.617;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:1,119:121:99:2761,300,0
chrV	13446	.	T	A	1919	SnpCluster	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=17.45;SB=-1.475e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1952,207,0
chrV	13447	.	C	T	1825	SnpCluster	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=16.44;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:1858,201,0
chrV	13449	.	G	T	1867	SnpCluster	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=16.97;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1900,207,0
chrV	13454	.	C	T	2070	SnpCluster	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=13.71;SB=-1.939e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:2103,225,0
chrV	13502	.	T	C	3330.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=221;Dels=0.00;FS=3.232;HaplotypeScore=193.0732;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-0.431;QD=15.07;ReadPosRankSum=1.716;SB=-2.711e+03	GT:AD:DP:GQ:PL	1/1:1,220:221:99:3330,369,0
chrV	13812	.	T	C	2713	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.55;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2746,306,0
chrV	14025	.	A	G	1855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.656;QD=20.38;ReadPosRankSum=1.656;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1888,210,0
chrV	14061	.	A	G	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.115;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=-0.784;QD=21.21;ReadPosRankSum=1.650;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1815,207,0
chrV	14175	.	A	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.70;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1781,189,0
chrV	14408	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=20.81;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1635,174,0
chrV	14438	.	T	A	1611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=9.906;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=0.150;QD=21.77;ReadPosRankSum=2.383;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1644,177,0
chrV	14476	.	G	A	1358	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.34;MQ0=0;QD=19.40;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1391,153,0
chrV	14482	.	A	G	1114	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=18.57;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1147,129,0
chrV	14512	.	C	G	1067	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=20.92;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1100,123,0
chrV	14579	.	T	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=19.12;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1429,153,0
chrV	14592	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=18.41;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1377,156,0
chrV	14610	.	A	G	1284	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=19.45;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1317,144,0
chrV	14660	.	T	A	523	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;QD=20.92;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:60:556,60,0
chrV	14676	.	A	G	362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;MQRankSum=-1.576;QD=16.45;ReadPosRankSum=1.576;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:1,21:22:45:395,45,0
chrV	15032	.	T	C	349	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;QD=6.58;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:42:382,42,0
chrV	15052	.	G	A	614	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=14.62;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:69:647,69,0
chrV	15174	.	C	T	36.08	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=82.1302;MLEAC=1;MLEAF=0.500;MQ=53.02;MQ0=0;MQRankSum=-1.580;QD=0.40;ReadPosRankSum=1.504;SB=-3.451e+02	GT:AD:DP:GQ:PL	0/1:1,90:91:15:66,0,15
chrV	15229	.	A	G	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=4.416;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;MQRankSum=0.074;QD=20.65;ReadPosRankSum=1.658;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1974,219,0
chrV	15399	.	T	C	2987	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.140;QD=24.09;ReadPosRankSum=1.676;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:3020,333,0
chrV	15479	.	T	C	1755	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.50;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,87:90:99:1788,198,0
chrV	15489	.	T	C	1660	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.00;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1693,186,0
chrV	15608	.	C	T	2640	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.64;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2673,282,0
chrV	15698	.	T	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.5522;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.75;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1844,201,0
chrV	15826	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.124;QD=22.07;ReadPosRankSum=1.672;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1291,150,0
chrV	15946	.	G	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.13;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1533,165,0
chrV	15966	.	G	A	1322	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.34;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1355,144,0
chrV	15999	.	G	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.52;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1367,147,0
chrV	17311	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.30;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1215,129,0
chrV	17320	.	G	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.05;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1246,132,0
chrV	17400	.	T	A	1314	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.61;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1347,150,0
chrV	17548	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.72;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1359,156,0
chrV	17824	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.06;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1501,174,0
chrV	17871	.	G	A	1746	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.04;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1779,189,0
chrV	17918	.	T	A	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;MQRankSum=0.937;QD=19.40;ReadPosRankSum=1.619;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1236,135,0
chrV	18031	.	G	A	2398	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.7362;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.41;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2431,258,0
chrV	18035	.	C	T	2222	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.66;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2255,243,0
chrV	18138	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=16.25;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1398,153,0
chrV	18162	.	T	A	1339	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.18;MQ0=0;QD=15.04;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1372,147,0
chrV	18174	.	A	T	951	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=10.81;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:984,114,0
chrV	18178	.	A	C	859	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=5.105;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;MQRankSum=-1.732;QD=10.60;ReadPosRankSum=1.689;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:892,99,0
chrV	18182	.	T	C	854	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=10.67;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:887,99,0
chrV	18193	.	T	A	934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.19;MQ0=0;MQRankSum=-1.605;QD=11.39;ReadPosRankSum=1.690;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:967,105,0
chrV	18224	.	C	T	786	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.64;MQ0=0;QD=12.28;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:87:819,87,0
chrV	18229	.	C	T	751	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.147;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.8020;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=0.708;QD=10.58;ReadPosRankSum=0.854;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:62:784,62,0
chrV	18232	.	G	A	893	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.5907;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=11.91;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:926,99,0
chrV	18285	.	A	T	2836	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.69;SB=-1.623e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2869,306,0
chrV	18487	.	T	C	1172	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=8.409;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.98;MQ0=0;MQRankSum=-1.690;QD=18.03;ReadPosRankSum=2.298;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1205,135,0
chrV	18609	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=17.482;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.058;QD=20.28;ReadPosRankSum=2.373;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1331,150,0
chrV	18949	.	T	C	265	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=10.60;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:33:298,33,0
chrV	18960	.	T	C	179.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.77;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:212,24,0
chrV	18961	.	T	G	178.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.69;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:211,24,0
chrV	18962	.	T	C	180.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.85;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:213,24,0
chrV	18963	.	G	A	192.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.77;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:225,24,0
chrV	18965	.	G	T	188.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.46;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:221,24,0
chrV	18979	.	G	A	155.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=5.54;SB=-1.911e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:21:188,21,0
chrV	18986	.	A	C	76.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=3.06;SB=-1.355e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:12:109,12,0
chrV	18988	.	C	T	107.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;QD=3.83;SB=-1.773e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:15:140,15,0
chrV	18994	.	G	A	207.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=6.47;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:27:240,27,0
chrV	19144	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.07;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1571,174,0
chrV	19236	.	C	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=23.08;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1187,129,0
chrV	19307	.	G	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;QD=20.26;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1046,120,0
chrV	19431	.	C	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=54.5401;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.40;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1137,120,0
chrV	19504	.	T	C	1432	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=19.35;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1465,159,0
chrV	19513	.	C	T	1314	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=18.51;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1347,144,0
chrV	19517	.	A	T	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.271;DP=75;Dels=0.00;FS=5.355;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;MQRankSum=1.096;QD=14.93;ReadPosRankSum=3.336;SB=-4.429e+02	GT:AD:DP:GQ:PL	1/1:4,71:75:99:1153,126,0
chrV	19554	.	A	G	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;DP=72;Dels=0.00;FS=22.189;HaplotypeScore=28.6100;MLEAC=1;MLEAF=0.500;MQ=41.00;MQ0=0;MQRankSum=2.358;QD=0.49;ReadPosRankSum=-3.701;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,10:72:65:65,0,549
chrV	19588	.	T	A	70.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.927;DP=46;Dels=0.00;FS=17.106;HaplotypeScore=6.2698;MLEAC=1;MLEAF=0.500;MQ=41.63;MQ0=2;MQRankSum=2.368;QD=1.52;ReadPosRankSum=-4.765;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,13:46:99:100,0,122
chrV	19675	.	C	T	77.51	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.10;MQ0=4;QD=5.54;SB=-5.255e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:12:110,12,0
chrV	21110	.	A	T	501	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.00;MQ0=26;QD=10.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:46:57:534,57,0
chrV	21226	.	T	G	290	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.98;MQ0=16;QD=10.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:36:323,36,0
chrV	21381	.	A	G	1143	filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=14;QD=17.32;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1176,129,0
chrV	21406	.	C	T	1566	filter	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=16;QD=18.42;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1599,180,0
chrV	21440	.	T	G	1439	filter	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=15;QD=18.22;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1472,162,0
chrV	21521	.	C	A	1137	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=11;QD=20.67;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1170,126,0
chrV	21547	.	T	C	786	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=3;QD=21.83;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:93:819,93,0
chrV	21548	.	T	C	770	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=3;QD=22.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:90:803,90,0
chrV	21741	.	A	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=3;QD=17.86;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1176,126,0
chrV	21762	.	C	A	835	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=47;Dels=0.00;FS=3.212;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=3;MQRankSum=-0.630;QD=17.77;ReadPosRankSum=1.024;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:93:868,93,0
chrV	21768	.	A	G	689	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=35.96;MQ0=3;QD=16.02;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:81:722,81,0
chrV	21771	.	A	G	633	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=3;QD=15.07;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:666,75,0
chrV	21883	.	G	A	1482	filter	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=4;QD=19.25;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1515,162,0
chrV	21951	.	A	G	92.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=3;MQRankSum=0.964;QD=4.39;ReadPosRankSum=1.542;SB=-7.876e+01	GT:AD:DP:GQ:PL	1/1:1,20:21:15:125,15,0
chrV	21954	.	A	T	46.97	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.06;MQ0=3;QD=2.94;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:9:79,9,0
chrV	21990	.	A	G	43.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=2;QD=2.75;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,16:16:9:76,9,0
chrV	21993	.	A	T	45.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.51;MQ0=2;QD=2.87;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,16:16:9:78,9,0
chrV	21999	.	G	A	101.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.86;MQ0=2;QD=5.63;SB=-2.384e-01	GT:AD:DP:GQ:PL	1/1:0,18:18:15:134,15,0
chrV	22026	.	C	T	532	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.30;MQ0=2;QD=12.09;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:66:565,66,0
chrV	22150	.	G	A	1006	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=2;QD=18.63;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1039,117,0
chrV	22188	.	A	C	750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=55;Dels=0.00;FS=5.591;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=37.24;MQ0=2;MQRankSum=-0.706;QD=13.64;ReadPosRankSum=2.865;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:3,51:55:84:783,84,0
chrV	22191	.	G	A	841	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=2;QD=15.87;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:874,93,0
chrV	22200	.	A	G	771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=1;MQRankSum=-1.155;QD=14.02;ReadPosRankSum=1.668;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:90:804,90,0
chrV	22302	.	T	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.41;MQ0=2;QD=3.63;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:6:53,6,0
chrV	22542	.	G	C	1124	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=4;QD=19.05;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1157,132,0
chrV	22614	.	C	G	199.01	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.88;MQ0=3;QD=6.22;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:0,32:32:27:232,27,0
chrV	22641	.	C	A	84.51	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=3;QD=3.13;SB=-5.221e-01	GT:AD:DP:GQ:PL	1/1:0,27:27:12:117,12,0
chrV	22644	.	T	A	78.51	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=3;QD=2.91;SB=-5.224e-01	GT:AD:DP:GQ:PL	1/1:0,27:27:12:111,12,0
chrV	22665	.	G	A	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.95;MQ0=2;QD=0.72;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,26:26:6:50,6,0
chrV	22812	.	C	T	51.97	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.63;MQ0=7;QD=1.68;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:9:84,9,0
chrV	22824	.	C	T	108.26	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.90;MQ0=7;QD=2.85;SB=-1.118e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:15:141,15,0
chrV	22863	.	G	A	821	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=60;Dels=0.00;FS=3.680;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=4;MQRankSum=0.804;QD=13.68;ReadPosRankSum=-0.371;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:93:854,93,0
chrV	22917	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=1;QD=21.87;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1564,168,0
chrV	23013	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=2;QD=18.88;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1468,159,0
chrV	23192	.	C	T	857	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=2;QD=13.60;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:96:890,96,0
chrV	23230	.	A	T	47.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=46;Dels=0.00;FS=3.108;HaplotypeScore=24.6880;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;MQRankSum=1.270;QD=1.04;ReadPosRankSum=1.347;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:9:80,9,0
chrV	23290	.	G	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.45;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1749,189,0
chrV	23309	.	A	G	1764	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.00;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1797,201,0
chrV	23456	.	C	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.61;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1641,174,0
chrV	23472	.	C	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=18.15;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1558,174,0
chrV	23494	.	C	T	1826	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.07;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1859,198,0
chrV	23915	.	G	A	2197	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.62;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2230,240,0
chrV	23976	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2686;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.47;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1649,183,0
chrV	24002	.	G	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=23.16;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1631,180,0
chrV	24025	.	G	C	1195	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=20.60;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1228,138,0
chrV	24122	.	C	T	1775	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.65;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1808,192,0
chrV	24163	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.40;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1255,135,0
chrV	24165	.	C	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.69;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1234,135,0
chrV	24232	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=21.61;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1135,120,0
chrV	24259	.	C	T	1318	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.28;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1351,147,0
chrV	24354	.	A	G	1437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.102;DP=85;Dels=0.00;FS=16.401;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=0.280;QD=16.91;ReadPosRankSum=3.352;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:4,81:85:99:1470,168,0
chrV	24380	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=16.00;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1185,132,0
chrV	24388	.	A	G	1081	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=15.01;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1114,129,0
chrV	24392	.	A	T	858	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=12.08;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:891,102,0
chrV	24419	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=13.28;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:90:843,90,0
chrV	24446	.	T	C	1121	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.000;QD=16.01;ReadPosRankSum=1.584;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1154,129,0
chrV	24575	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.86;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1222,138,0
chrV	24581	.	C	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=18.72;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1175,135,0
chrV	24596	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=20.82;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1324,147,0
chrV	24650	.	T	G	1265	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=16.64;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1298,144,0
chrV	24661	.	C	T	1257	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=15.71;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1290,144,0
chrV	24670	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=17.57;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1509,168,0
chrV	24749	.	G	A	1432	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=16.09;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1465,165,0
chrV	24754	.	A	G	1550	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=18.02;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1583,177,0
chrV	24870	.	G	A	2748	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.4115;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.49;SB=-1.385e+03	GT:AD:DP:GQ:PL	1/1:0,115:117:99:2781,297,0
chrV	24902	.	G	A	2805	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.82;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2838,300,0
chrV	24966	.	G	A	2552	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=24.54;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2585,276,0
chrV	25051	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=19.04;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1594,183,0
chrV	25095	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=16.81;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1176,132,0
chrV	25103	.	A	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.90;MQ0=0;QD=17.59;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1159,126,0
chrV	25106	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=16.17;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1149,132,0
chrV	25120	.	T	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=15.18;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1065,120,0
chrV	25188	.	G	T	1898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=0.035;QD=19.17;ReadPosRankSum=1.591;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:1,97:99:99:1931,216,0
chrV	25194	.	A	G	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5747;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.423;QD=19.38;ReadPosRankSum=1.698;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:1990,222,0
chrV	25237	.	C	T	2094	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.37;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2127,228,0
chrV	25332	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=16.99;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1239,135,0
chrV	25369	.	C	T	1265	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.17;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1298,138,0
chrV	25407	.	G	A	267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=69;Dels=0.03;FS=5.342;HaplotypeScore=50.3994;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=1.359;QD=3.87;ReadPosRankSum=0.400;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:33:300,33,0
chrV	25571	.	A	T	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.239;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.481;QD=22.71;ReadPosRankSum=1.682;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1600,171,0
chrV	25617	.	T	C	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.346;QD=22.99;ReadPosRankSum=1.683;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1665,189,0
chrV	25685	.	G	A	1764	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.78;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1797,201,0
chrV	25874	.	A	C	1581	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.52;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1614,180,0
chrV	25914	.	G	A	1816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.409;QD=20.40;ReadPosRankSum=1.421;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1849,204,0
chrV	26197	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.88;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1808,207,0
chrV	26265	.	A	C	1749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.022;QD=22.14;ReadPosRankSum=1.688;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1782,198,0
chrV	26313	.	G	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=15.31;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1181,135,0
chrV	26322	.	C	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=16.18;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1085,123,0
chrV	26413	.	A	G	1066	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.04;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1099,120,0
chrV	26594	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1769,192,0
chrV	26678	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=21.68;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1269,138,0
chrV	26685	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.03;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1213,129,0
chrV	27044	.	C	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.15;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1278,141,0
chrV	27119	.	A	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.10;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1341,150,0
chrV	27260	.	G	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.17;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1304,141,0
chrV	27272	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.71;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1176,132,0
chrV	27604	.	C	T	1901	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.9887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.06;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1934,204,0
chrV	27636	.	C	A	1970	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:2003,213,0
chrV	27912	.	T	C	1165	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.10;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1198,135,0
chrV	27980	.	A	T	1014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.331;QD=14.70;ReadPosRankSum=1.531;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1047,114,0
chrV	28167	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.44;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1357,150,0
chrV	28312	.	A	G	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.413;HaplotypeScore=6.5832;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.513;QD=21.32;ReadPosRankSum=1.601;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1717,189,0
chrV	28427	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.492;QD=19.90;ReadPosRankSum=1.684;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1466,165,0
chrV	28622	.	C	T	1336	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.24;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1369,153,0
chrV	28649	.	G	A	1309	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.57;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1342,147,0
chrV	28694	.	T	G	1412	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.39;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1445,165,0
chrV	28988	.	C	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.55;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1476,159,0
chrV	29072	.	C	T	956	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=18.38;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:989,105,0
chrV	29269	.	C	G	2402	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.07;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2435,267,0
chrV	29294	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=19.22;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1820,201,0
chrV	29909	.	C	T	1907	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.43;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1940,213,0
chrV	29962	.	C	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.87;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1717,192,0
chrV	30054	.	T	C	2072	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.2350;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.36;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2105,237,0
chrV	30664	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.89;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1375,153,0
chrV	31093	.	A	C	1832	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.90;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1865,210,0
chrV	31263	.	G	A	619	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.21;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:69:652,69,0
chrV	31273	.	G	A	665	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=19.56;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:75:698,75,0
chrV	31663	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1085,117,0
chrV	31867	.	T	C	2071	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.123;QD=22.76;ReadPosRankSum=1.694;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2104,237,0
chrV	33002	.	A	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.41;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1156,132,0
chrV	33344	.	C	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.59;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1598,174,0
chrV	33551	.	A	G	2793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=6.990;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;MQRankSum=0.746;QD=21.48;ReadPosRankSum=1.386;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,129:130:99:2826,318,0
chrV	33782	.	C	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.39;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1134,120,0
chrV	33814	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.22;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1145,129,0
chrV	34040	.	A	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.49;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1426,162,0
chrV	34050	.	G	A	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.115;QD=21.62;ReadPosRankSum=-0.635;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1330,125,0
chrV	34052	.	T	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.59;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1343,144,0
chrV	34127	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.22;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1801,195,0
chrV	34350	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.03;FS=0.000;HaplotypeScore=18.3237;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=17.82;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1316,150,0
chrV	34493	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.36;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1580,168,0
chrV	34622	.	T	C	2467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.761;QD=23.06;ReadPosRankSum=1.635;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2500,279,0
chrV	34811	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.33;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1375,147,0
chrV	35048	.	C	T	2320	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.52;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2353,249,0
chrV	35699	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.26;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1882,201,0
chrV	36053	.	A	C	1642	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1675,186,0
chrV	36245	.	T	A	2259	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.54;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2292,249,0
chrV	36420	.	G	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.29;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1710,186,0
chrV	36559	.	C	T	3891.01	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.94;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,156:156:99:3891,417,0
chrV	36687	.	G	A	3038	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.73;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3071,327,0
chrV	36768	.	T	C	2977	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.11;SB=-1.482e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3010,336,0
chrV	37036	.	G	A	2180	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.64;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2213,237,0
chrV	37407	.	T	C	1146	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.62;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1179,132,0
chrV	37441	.	A	T	945	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.00;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:978,105,0
chrV	37539	.	T	C	1040	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.80;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1073,120,0
chrV	37609	.	C	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1574,168,0
chrV	37747	.	G	A	1132	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1165,123,0
chrV	38037	.	C	T	3085	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.48;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,122:126:99:3118,330,0
chrV	38676	.	A	G	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.140;QD=17.30;ReadPosRankSum=1.685;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,73:76:99:1348,147,0
chrV	38716	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.63;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1725,183,0
chrV	38956	.	G	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1181,132,0
chrV	39238	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.39;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:886,93,0
chrV	39304	.	G	A	1130	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.55;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1163,126,0
chrV	39493	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.64;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1263,141,0
chrV	39580	.	C	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.72;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1828,195,0
chrV	39651	.	T	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.45;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1582,171,0
chrV	39664	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.35;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1485,159,0
chrV	40307	.	A	G	1845	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.06;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1878,210,0
chrV	40520	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.71;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1350,150,0
chrV	40622	.	G	A	1198	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.36;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1231,135,0
chrV	40623	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.19;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1134,129,0
chrV	40835	.	A	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.97;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1266,144,0
chrV	40988	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.221;QD=19.61;ReadPosRankSum=1.619;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1249,141,0
chrV	41089	.	G	A	858	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.82;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:96:891,96,0
chrV	41138	.	C	T	1421	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.76;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1454,153,0
chrV	41273	.	G	A	920	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=16.14;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:953,102,0
chrV	41275	.	T	C	814	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=14.28;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:96:847,96,0
chrV	41357	.	G	A	802	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=17.06;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:835,93,0
chrV	41366	.	G	A	918	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.36;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:951,102,0
chrV	41432	.	C	G	915	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.33;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:948,105,0
chrV	41545	.	T	C	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.270;QD=17.93;ReadPosRankSum=1.578;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1665,183,0
chrV	41687	.	A	C	1700	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.48;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1733,189,0
chrV	41711	.	C	G	1006	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=16.49;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1039,114,0
chrV	42238	.	A	T	528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=30;Dels=0.00;FS=3.142;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.208;QD=17.60;ReadPosRankSum=1.954;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:2,28:30:63:561,63,0
chrV	42418	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.50;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2013,225,0
chrV	42780	.	C	G	2146	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.25;SB=-1.393e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2179,240,0
chrV	43070	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.07;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1711,192,0
chrV	43074	.	T	C	1773	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.27;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1806,201,0
chrV	43494	.	A	G	1385	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.07;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1418,162,0
chrV	43578	.	A	G	1793	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.6398;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.49;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1826,207,0
chrV	43959	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.65;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1224,129,0
chrV	44019	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.52;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1487,171,0
chrV	44360	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.18;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1203,135,0
chrV	44529	.	A	G	2050	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.78;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2083,234,0
chrV	44601	.	T	G	2599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.946;QD=21.66;ReadPosRankSum=1.674;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2632,294,0
chrV	44613	.	T	C	2413	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.62;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2446,273,0
chrV	44641	.	A	G	1741	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.1046;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.59;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1774,201,0
chrV	44763	.	A	G	1585	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.32;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1618,180,0
chrV	44999	.	C	G	2096	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.41;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2129,240,0
chrV	45606	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.60;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1621,171,0
chrV	45637	.	C	T	1844	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.69;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1877,198,0
chrV	45963	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=21.68;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1572,180,0
chrV	45977	.	C	A	1190	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=20.52;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1223,132,0
chrV	46022	.	C	T	1071	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=19.12;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1104,120,0
chrV	46030	.	C	G	925	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.14;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:958,108,0
chrV	46329	.	C	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.03;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=18.29;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1368,150,0
chrV	46348	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=20.17;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1203,129,0
chrV	46749	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=63.3440;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.51;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1224,141,0
chrV	46866	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.73;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1197,135,0
chrV	46910	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.88;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1641,186,0
chrV	46984	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.82;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1601,180,0
chrV	47089	.	T	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.94;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1568,177,0
chrV	47165	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=64;Dels=0.00;FS=2.894;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-2.058;QD=19.44;ReadPosRankSum=2.372;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1277,141,0
chrV	47764	.	A	G	2168	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3151;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.12;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2201,249,0
chrV	48016	.	C	T	2345	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=15.7127;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.57;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2378,258,0
chrV	48081	.	C	G	1859	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=18.23;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1892,213,0
chrV	48099	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.161;QD=17.00;ReadPosRankSum=1.692;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1495,165,0
chrV	48112	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=14.95;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1169,126,0
chrV	48124	.	A	G	1072	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=4.225;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;MQRankSum=-0.887;QD=12.92;ReadPosRankSum=1.648;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1105,123,0
chrV	48175	.	C	T	2040	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.5910;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.82;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2073,222,0
chrV	48289	.	A	G	1910	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=12.1063;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.37;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1943,222,0
chrV	48384	.	T	C	4015.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=180;Dels=0.00;FS=3.133;HaplotypeScore=14.3304;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.300;QD=22.31;ReadPosRankSum=1.674;SB=-2.194e+03	GT:AD:DP:GQ:PL	1/1:1,178:180:99:4015,444,0
chrV	48555	.	T	C	1385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.204;QD=19.51;ReadPosRankSum=1.630;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,67:71:99:1418,162,0
chrV	48609	.	G	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.43;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1121,126,0
chrV	48636	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.73;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1213,129,0
chrV	48663	.	G	A	2041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.149;QD=21.48;ReadPosRankSum=0.602;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2074,219,0
chrV	48745	.	A	G	2261	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.917;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.179;QD=18.69;ReadPosRankSum=2.409;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:2,119:121:99:2294,252,0
chrV	48831	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.99;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1274,144,0
chrV	48849	.	T	C	1133	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=15.74;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1166,132,0
chrV	48856	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.999;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;MQRankSum=0.161;QD=16.00;ReadPosRankSum=2.379;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1137,126,0
chrV	48897	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.577;QD=16.55;ReadPosRankSum=1.675;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1026,114,0
chrV	48972	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.52;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1238,135,0
chrV	49043	.	T	G	1145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;MQRankSum=-1.617;QD=19.08;ReadPosRankSum=1.675;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1178,132,0
chrV	49056	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.48;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1197,138,0
chrV	49130	.	C	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=17.50;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1188,129,0
chrV	49185	.	G	A	1503	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.59;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1536,162,0
chrV	49341	.	C	T	1147	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=9.8869;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.12;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1180,126,0
chrV	49397	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.31;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1245,141,0
chrV	49411	.	T	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=16.45;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1234,138,0
chrV	49511	.	C	T	1630	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.33;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1663,177,0
chrV	49751	.	C	T	1383	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.34;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1416,150,0
chrV	49766	.	A	T	1313	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.76;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1346,144,0
chrV	49908	.	T	C	1144	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.559;QD=18.45;ReadPosRankSum=1.621;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1177,132,0
chrV	50125	.	A	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.04;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1764,189,0
chrV	50151	.	A	C	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=67;Dels=0.00;FS=5.546;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.016;QD=22.12;ReadPosRankSum=2.830;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:3,62:67:99:1515,168,0
chrV	50218	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.32;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1541,171,0
chrV	50835	.	C	T	779	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.57;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:812,90,0
chrV	50918	.	C	T	1048	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.41;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1081,120,0
chrV	51006	.	A	G	1109	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.54;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1142,129,0
chrV	51087	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.69;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1421,159,0
chrV	51366	.	G	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.20;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1276,141,0
chrV	51423	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.41;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1445,153,0
chrV	51780	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.29;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1636,186,0
chrV	51822	.	C	T	2268	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.38;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2301,249,0
chrV	51919	.	T	C	2239	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.34;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2272,255,0
chrV	51959	.	C	T	1962	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.80;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1995,222,0
chrV	52448	.	A	T	40.97	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=59.9517;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=0.61;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:9:73,9,0
chrV	53456	.	G	A	873	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.98;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:906,99,0
chrV	53463	.	A	G	815	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=17.72;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:848,93,0
chrV	53537	.	G	T	1284	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=18.61;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1317,141,0
chrV	53618	.	T	G	2506	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.64;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2539,282,0
chrV	53704	.	T	C	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.394;QD=20.23;ReadPosRankSum=1.698;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2076,234,0
chrV	54363	.	C	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.48;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1753,189,0
chrV	54951	.	T	C	2026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.466;QD=21.78;ReadPosRankSum=1.695;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2059,231,0
chrV	55841	.	C	T	1981	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0337;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.01;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2014,216,0
chrV	56129	.	A	C	2120	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.19;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2153,243,0
chrV	56149	.	A	C	2000	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.05;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2033,228,0
chrV	56166	.	G	A	1706	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=16.89;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1739,186,0
chrV	56171	.	A	G	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;MQRankSum=-0.034;QD=15.79;ReadPosRankSum=1.596;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:1,101:103:99:1659,186,0
chrV	56315	.	T	C	4540.01	PASS	AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.25;SB=-2.397e+03	GT:AD:DP:GQ:PL	1/1:0,201:204:99:4540,510,0
chrV	56394	.	A	G	2392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=3.200;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.466;QD=20.44;ReadPosRankSum=1.673;SB=-1.397e+03	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2425,270,0
chrV	57070	.	A	G	2242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.936;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=0.437;QD=22.65;ReadPosRankSum=1.697;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2275,249,0
chrV	57203	.	C	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.82;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1473,156,0
chrV	57448	.	A	G	1841	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.38;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1874,210,0
chrV	57449	.	T	A	1949	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.291;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=0.938;QD=20.30;ReadPosRankSum=1.660;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1982,216,0
chrV	57614	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.75;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1694,183,0
chrV	57806	.	T	C	2508	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.39;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2541,288,0
chrV	57836	.	T	C	961	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9320;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=13.93;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:994,117,0
chrV	57855	.	T	A	529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.843;DP=57;Dels=0.00;FS=3.076;HaplotypeScore=5.0532;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;MQRankSum=-1.236;QD=9.28;ReadPosRankSum=1.366;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:46:562,46,0
chrV	57861	.	T	C	703	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.7442;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=12.55;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:736,84,0
chrV	58022	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.00;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1344,153,0
chrV	58103	.	C	A	1914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.850;QD=17.09;ReadPosRankSum=0.220;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,109:112:99:1947,207,0
chrV	58114	.	A	G	1905	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=15.61;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,120:122:99:1938,216,0
chrV	58183	.	A	G	2261	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.358;QD=20.19;ReadPosRankSum=1.701;SB=-1.377e+03	GT:AD:DP:GQ:PL	1/1:1,110:112:99:2294,258,0
chrV	58245	.	T	C	1262	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.72;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1295,147,0
chrV	58341	.	C	T	1664	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.33;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1697,186,0
chrV	59312	.	G	A	1552	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.70;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1585,174,0
chrV	59461	.	T	C	926	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:959,108,0
chrV	59504	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.82;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1274,141,0
chrV	59555	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.12;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1836,201,0
chrV	60057	.	A	G	1970	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=3.039;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.513;QD=21.41;ReadPosRankSum=2.369;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2003,225,0
chrV	60147	.	G	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.39;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1431,162,0
chrV	60162	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=16.92;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1370,153,0
chrV	60891	.	G	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.05;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1570,174,0
chrV	60924	.	A	G	1592	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.76;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1625,183,0
chrV	61123	.	G	A	2158	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=53.1660;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=18.13;SB=-1.461e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2191,231,0
chrV	61194	.	A	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=74.2684;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=13.40;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1266,144,0
chrV	61280	.	C	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5278;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.36;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1153,123,0
chrV	61449	.	C	A	2158	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=21.16;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2191,237,0
chrV	61456	.	A	G	1971	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;QD=20.53;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2004,228,0
chrV	61507	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=20.97;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1669,177,0
chrV	61565	.	G	A	1001	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.25;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1034,111,0
chrV	61667	.	A	G	1083	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=16.92;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1116,123,0
chrV	61799	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=23.05;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1485,159,0
chrV	62511	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.36;MQ0=0;QD=16.70;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1553,165,0
chrV	62630	.	T	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.21;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1854,210,0
chrV	63059	.	C	A	1661	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1694,192,0
chrV	63253	.	A	C	1875	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.20;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1908,213,0
chrV	63369	.	C	T	1528	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.93;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1561,165,0
chrV	63829	.	T	G	473.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.422;DP=51;Dels=0.00;FS=9.621;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=38.14;MQ0=0;MQRankSum=2.149;QD=9.28;ReadPosRankSum=-1.656;SB=-2.593e+02	GT:AD:DP:GQ:PL	1/1:7,44:51:15:506,15,0
chrV	63847	.	A	C	201.01	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.08;MQ0=0;QD=7.18;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:27:234,27,0
chrV	63892	.	T	C	45.97	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.51;MQ0=0;QD=2.70;SB=-9.972e+01	GT:AD:DP:GQ:PL	1/1:1,16:17:9:78,9,0
chrV	63895	.	T	C	45.97	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=0;QD=2.55;SB=-1.267e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:9:78,9,0
chrV	63917	.	A	G	217.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.1891;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;MQRankSum=0.727;QD=7.00;ReadPosRankSum=1.286;SB=-1.530e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:27:250,27,0
chrV	63919	.	T	C	236	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.612;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.1891;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=0.815;QD=6.94;ReadPosRankSum=1.223;SB=-1.510e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:30:269,30,0
chrV	65198	.	T	C	857	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.23;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,45:47:99:890,99,0
chrV	67159	.	A	G	1557	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.59;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1590,189,0
chrV	68346	.	A	G	1944	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.46;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1977,225,0
chrV	68379	.	G	A	1771	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.59;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1804,195,0
chrV	68442	.	C	G	1684	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.92;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1717,195,0
chrV	68457	.	C	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.49;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1753,186,0
chrV	68472	.	C	T	1427	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=15.68;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1460,159,0
chrV	68475	.	C	T	1214	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=13.34;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1247,141,0
chrV	68547	.	G	A	2058	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.2405;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=20.79;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2091,222,0
chrV	68643	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.13;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1640,189,0
chrV	68702	.	C	G	1434	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=16.87;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1467,165,0
chrV	68714	.	C	G	1482	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.30;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1515,171,0
chrV	68798	.	T	G	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=70;Dels=0.00;FS=7.490;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=1.797;QD=18.11;ReadPosRankSum=2.341;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:2,66:70:99:1301,150,0
chrV	68910	.	T	C	2169	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.66;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2202,252,0
chrV	68945	.	G	T	2669	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.2763;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.88;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2702,288,0
chrV	68996	.	G	A	2618	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.00;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2651,294,0
chrV	69083	.	T	C	1591	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.73;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1624,183,0
chrV	69184	.	T	C	693	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=14.74;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:81:726,81,0
chrV	69208	.	C	T	481	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=12.66;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:54:514,54,0
chrV	69209	.	A	C	440	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=11.58;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:54:473,54,0
chrV	69229	.	C	T	357	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=11.16;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:42:390,42,0
chrV	69726	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.82;MQ0=0;QD=19.33;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1309,144,0
chrV	70335	.	A	C	1586	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=17.43;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1619,177,0
chrV	70338	.	A	G	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.161;QD=17.80;ReadPosRankSum=1.694;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1653,186,0
chrV	70424	.	A	T	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=73;Dels=0.01;FS=10.067;HaplotypeScore=10.5557;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-0.483;QD=17.84;ReadPosRankSum=2.379;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:3,69:72:99:1335,150,0
chrV	70531	.	G	A	974	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.10;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1007,108,0
chrV	70816	.	C	T	1833	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.09;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1866,201,0
chrV	70852	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6521;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.675;QD=18.09;ReadPosRankSum=1.659;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:1770,198,0
chrV	70912	.	A	G	1220	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.21;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1253,144,0
chrV	70954	.	A	G	599	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=12.74;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:72:632,72,0
chrV	70964	.	C	T	650	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=11.21;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:75:683,75,0
chrV	70969	.	A	C	609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=0.147;QD=10.32;ReadPosRankSum=1.674;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:72:642,72,0
chrV	70986	.	C	T	686	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=10.72;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:78:719,78,0
chrV	72694	.	T	G	1780	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.19;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1813,204,0
chrV	72800	.	C	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=17.95;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1433,159,0
chrV	72942	.	C	T	2448	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.10;SB=-1.198e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2481,273,0
chrV	72990	.	T	G	2332	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.64;SB=-1.372e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2365,267,0
chrV	73003	.	T	A	2304	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.03;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2337,252,0
chrV	73131	.	G	A	2247	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.03;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2280,243,0
chrV	73422	.	T	C	2742	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.16;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,133:136:99:2775,309,0
chrV	73592	.	C	T	2263	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.76;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2296,246,0
chrV	73600	.	G	C	2226	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.24;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2259,255,0
chrV	73670	.	G	A	2217	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=23.09;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2250,237,0
chrV	73686	.	C	T	1933	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.48;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1966,222,0
chrV	74271	.	T	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.59;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1483,168,0
chrV	74745	.	G	A	2143	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.1469;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.65;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2176,240,0
chrV	74982	.	T	C	1054	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.5203;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.86;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1087,120,0
chrV	74994	.	T	C	1054	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.86;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1087,123,0
chrV	75225	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.448;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.685;QD=23.44;ReadPosRankSum=1.685;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1744,195,0
chrV	75516	.	A	C	795	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.87;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:828,93,0
chrV	75539	.	T	C	820	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.08;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:853,99,0
chrV	75589	.	G	A	1248	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=15.80;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1281,135,0
chrV	75594	.	C	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.49;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1402,150,0
chrV	75731	.	T	G	1397	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.63;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1430,159,0
chrV	75745	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=16.39;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1328,147,0
chrV	75860	.	A	C	2132	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.68;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2165,243,0
chrV	76029	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.29;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1170,129,0
chrV	76078	.	C	T	1072	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.02;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1105,120,0
chrV	76107	.	G	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.44;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1448,162,0
chrV	76232	.	C	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=18.48;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1641,180,0
chrV	76273	.	A	C	2003	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=98;Dels=0.00;FS=2.922;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.140;QD=20.44;ReadPosRankSum=2.399;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:2,95:98:99:2036,231,0
chrV	76357	.	A	G	1568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=4.162;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.258;QD=21.19;ReadPosRankSum=1.685;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1601,180,0
chrV	76382	.	A	G	1315	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.92;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1348,153,0
chrV	76472	.	A	G	1039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.074;QD=20.78;ReadPosRankSum=1.559;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:2,48:50:99:1072,120,0
chrV	76636	.	G	A	2202	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.3305;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.59;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2235,240,0
chrV	76912	.	A	G	1349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.155;QD=20.44;ReadPosRankSum=0.105;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1382,156,0
chrV	77032	.	A	G	1951	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=88;Dels=0.00;FS=3.024;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.574;QD=22.17;ReadPosRankSum=2.394;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1984,222,0
chrV	77098	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DP=78;Dels=0.00;FS=3.493;HaplotypeScore=3.5615;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.641;QD=18.72;ReadPosRankSum=1.687;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1493,154,0
chrV	77310	.	G	A	1440	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.87;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1473,159,0
chrV	77444	.	T	C	1577	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1610,177,0
chrV	77500	.	G	A	907	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=16.20;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:940,105,0
chrV	77558	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.32;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1163,126,0
chrV	77686	.	A	G	1402	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.57;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1435,162,0
chrV	77918	.	C	T	923	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.51;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:956,105,0
chrV	77973	.	T	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.60;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1284,144,0
chrV	78595	.	C	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.30;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1396,159,0
chrV	78615	.	T	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.96;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1570,171,0
chrV	78893	.	T	G	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=69;Dels=0.00;FS=9.294;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.232;QD=14.71;ReadPosRankSum=2.379;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1048,117,0
chrV	78895	.	C	G	1002	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=14.74;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1035,117,0
chrV	79059	.	T	C	2019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=0.268;QD=20.81;ReadPosRankSum=1.696;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2052,231,0
chrV	79285	.	A	G	1305	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.64;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1338,150,0
chrV	79309	.	C	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.54;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1476,159,0
chrV	79396	.	C	T	816	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=14.32;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,57:57:96:849,96,0
chrV	79416	.	G	A	979	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=17.80;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1012,108,0
chrV	79549	.	C	T	492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-1.540;QD=8.95;ReadPosRankSum=1.668;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:57:525,57,0
chrV	79607	.	G	A	358	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=13.26;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:42:391,42,0
chrV	79621	.	C	G	488	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=11.62;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:60:521,60,0
chrV	79626	.	A	G	572	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=13.30;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:66:605,66,0
chrV	79648	.	C	T	590	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=12.29;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:66:623,66,0
chrV	79663	.	A	G	723	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=11.85;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,61:61:87:756,87,0
chrV	80081	.	C	T	3397.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.71;SB=-1.563e+03	GT:AD:DP:GQ:PL	1/1:0,164:164:99:3397,363,0
chrV	80083	.	C	T	3119	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=19.25;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,161:162:99:3152,348,0
chrV	80096	.	A	G	2746	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.61;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2779,312,0
chrV	80182	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.280;HaplotypeScore=7.6011;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.398;QD=16.46;ReadPosRankSum=1.607;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1399,156,0
chrV	80303	.	T	A	1784	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1784;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.04;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1817,201,0
chrV	80437	.	G	C	1732	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.62;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1765,201,0
chrV	80485	.	C	T	1364	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.94;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1397,150,0
chrV	80509	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1030;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=16.51;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1238,141,0
chrV	80557	.	T	G	1255	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=16.96;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1288,144,0
chrV	80633	.	A	G	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;DP=64;Dels=0.00;FS=7.132;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.059;QD=18.47;ReadPosRankSum=0.255;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1215,116,0
chrV	80671	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.73;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1138,129,0
chrV	80717	.	G	A	2115	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6457;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=20.94;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2148,231,0
chrV	80728	.	C	G	2250	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8882;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=20.45;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2283,252,0
chrV	80737	.	A	G	2145	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.1685;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.98;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2178,246,0
chrV	81049	.	C	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.07;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1158,129,0
chrV	81181	.	A	G	2246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=2.611;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;MQRankSum=-0.437;QD=18.56;ReadPosRankSum=2.409;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:2,119:121:99:2279,258,0
chrV	81333	.	T	A	2048	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.040;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.120;QD=20.90;ReadPosRankSum=1.780;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:2,92:98:99:2081,243,0
chrV	81356	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.47;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1466,165,0
chrV	81509	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=21.90;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1741,195,0
chrV	81713	.	G	A	2298	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.10;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2331,249,0
chrV	81775	.	C	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.39;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1645,174,0
chrV	82033	.	G	A	1163	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=15.93;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1196,129,0
chrV	82271	.	T	A	826	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.67;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:859,93,0
chrV	82319	.	G	A	868	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.70;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:901,99,0
chrV	82875	.	T	G	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-1.168;QD=13.43;ReadPosRankSum=1.692;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1188,135,0
chrV	82923	.	A	T	2830	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=12.8414;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.93;SB=-1.658e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2863,306,0
chrV	83036	.	C	T	2366	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.12;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2399,255,0
chrV	84562	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.35;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1173,132,0
chrV	84797	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.75;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1216,132,0
chrV	84821	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.67;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1170,129,0
chrV	84896	.	G	T	29.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;DP=47;Dels=0.02;FS=8.683;HaplotypeScore=161.2133;MLEAC=1;MLEAF=0.500;MQ=35.38;MQ0=0;MQRankSum=3.177;QD=0.62;ReadPosRankSum=-3.060;SB=-1.218e+00	GT:AD:DP:GQ:PL	0/1:42,4:46:10:59,0,10
chrV	84929	.	C	T	130.13	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=30.92;MQ0=0;QD=2.71;SB=-1.651e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:18:163,18,0
chrV	85009	.	G	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.35;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1207,129,0
chrV	89021	.	G	T	1956	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1989,216,0
chrV	90719	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.39;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1501,162,0
chrV	90720	.	C	T	1509	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.96;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1542,162,0
chrV	90830	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.84;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1243,138,0
chrV	91322	.	G	A	1274	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1307,141,0
chrV	91496	.	A	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.69;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1962,207,0
chrV	91637	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.15;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2137,234,0
chrV	91715	.	C	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=24.27;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1562,165,0
chrV	91751	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.64;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1168,132,0
chrV	96109	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.06;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1236,135,0
chrV	96227	.	T	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.79;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1405,153,0
chrV	96428	.	G	A	1995	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.95;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2028,228,0
chrV	96439	.	G	T	1934	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=19.94;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1967,213,0
chrV	96537	.	A	C	2162	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.06;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2195,249,0
chrV	96764	.	G	T	2173	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.37;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2206,234,0
chrV	97220	.	T	G	1583	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1616,180,0
chrV	97322	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.03;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1133,120,0
chrV	97416	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.47;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1665,183,0
chrV	97752	.	A	G	1220	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.37;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1253,141,0
chrV	97755	.	T	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.18;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1284,138,0
chrV	98270	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.67;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1508,165,0
chrV	98283	.	A	G	1403	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7291;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.99;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1436,165,0
chrV	98381	.	T	C	2142	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.83;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2175,243,0
chrV	98507	.	T	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.14;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1703,183,0
chrV	98854	.	A	G	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.070;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=-0.482;QD=20.77;ReadPosRankSum=1.696;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2048,228,0
chrV	98856	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.38;MQ0=0;QD=19.31;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1887,213,0
chrV	98872	.	T	C	1729	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=103;Dels=0.00;FS=5.796;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;MQRankSum=-1.324;QD=16.79;ReadPosRankSum=2.873;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:3,100:103:99:1762,201,0
chrV	98893	.	A	G	1737	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=16.23;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:1770,198,0
chrV	98906	.	C	G	1611	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.9268;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=15.20;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:1644,186,0
chrV	98961	.	C	T	2314	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.5400;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.30;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2347,255,0
chrV	98997	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.23;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2137,228,0
chrV	98999	.	G	A	2036	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=19.77;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2069,219,0
chrV	99031	.	A	G	1896	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.23;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1929,216,0
chrV	99091	.	C	G	2160	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=48.17;MQ0=0;QD=17.70;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2193,246,0
chrV	99120	.	G	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.8606;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=14.31;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:1907,207,0
chrV	99124	.	C	T	1721	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=12.75;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:1754,195,0
chrV	99132	.	A	G	1856	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;MQRankSum=-1.075;QD=13.45;ReadPosRankSum=1.707;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:1,136:138:99:1889,216,0
chrV	99164	.	A	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.06;MQ0=0;QD=11.11;SB=-1.706e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:1611,186,0
chrV	99167	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=11.85;SB=-1.871e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:1775,192,0
chrV	99179	.	T	C	1917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=155;Dels=0.00;FS=3.016;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=41.95;MQ0=0;MQRankSum=-1.007;QD=12.37;ReadPosRankSum=2.418;SB=-1.829e+03	GT:AD:DP:GQ:PL	1/1:2,153:155:99:1950,222,0
chrV	99237	.	G	A	3113	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=20.21;SB=-2.045e+03	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3146,336,0
chrV	99302	.	A	G	2189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.362;DP=111;Dels=0.00;FS=8.052;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=2.413;QD=19.72;ReadPosRankSum=3.299;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:4,107:111:99:2222,246,0
chrV	99312	.	G	T	2163	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.84;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2196,240,0
chrV	99441	.	T	G	2021	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=21.27;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2054,231,0
chrV	99522	.	G	A	2442	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.01;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.85;SB=-1.569e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2475,273,0
chrV	99614	.	A	T	2434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=131;Dels=0.00;FS=7.679;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.766;QD=18.58;ReadPosRankSum=2.412;SB=-1.479e+03	GT:AD:DP:GQ:PL	1/1:2,129:131:99:2467,267,0
chrV	100074	.	G	A	2590	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=13.2667;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=20.72;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2623,279,0
chrV	100108	.	A	T	2189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=4.914;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;MQRankSum=-0.540;QD=23.29;ReadPosRankSum=1.583;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:2222,237,0
chrV	100213	.	T	A	928	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.74;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:961,102,0
chrV	100307	.	T	C	1763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;MQRankSum=1.669;QD=16.95;ReadPosRankSum=2.402;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:2,102:104:99:1796,198,0
chrV	100312	.	G	C	1815	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=16.06;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1848,204,0
chrV	100352	.	A	G	1319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=113;Dels=0.00;FS=2.599;HaplotypeScore=9.5848;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;MQRankSum=-2.719;QD=11.67;ReadPosRankSum=2.937;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:3,108:113:99:1352,150,0
chrV	100360	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.02;FS=0.000;HaplotypeScore=4.9024;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=10.39;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1186,126,0
chrV	100366	.	T	C	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.270;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9157;MLEAC=2;MLEAF=1.00;MQ=28.92;MQ0=0;MQRankSum=0.874;QD=9.42;ReadPosRankSum=-0.615;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:2,112:114:99:1107,126,0
chrV	100372	.	A	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=11.57;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:1364,147,0
chrV	100389	.	T	G	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=111;Dels=0.00;FS=4.655;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;MQRankSum=0.078;QD=10.30;ReadPosRankSum=1.701;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:1,110:111:99:1176,135,0
chrV	100391	.	A	G	1180	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=10.63;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1213,141,0
chrV	100400	.	T	A	1180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=104;Dels=0.00;FS=3.958;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=0;MQRankSum=-1.698;QD=11.35;ReadPosRankSum=1.698;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1213,135,0
chrV	100406	.	T	G	1157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.433;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=33.38;MQ0=0;MQRankSum=-1.482;QD=11.93;ReadPosRankSum=1.696;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1190,135,0
chrV	100451	.	A	G	963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=11.833;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;MQRankSum=0.182;QD=15.79;ReadPosRankSum=2.369;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:996,108,0
chrV	100635	.	T	G	1424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.670;QD=18.99;ReadPosRankSum=1.594;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1457,168,0
chrV	100681	.	A	T	2804	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=22.61;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2837,300,0
chrV	101285	.	T	A	1950	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.31;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1983,210,0
chrV	101365	.	T	C	2012	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.11;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2045,234,0
chrV	101643	.	T	A	976	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.92;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1009,111,0
chrV	101687	.	A	G	1086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.126;DP=61;Dels=0.00;FS=2.668;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.154;QD=17.80;ReadPosRankSum=2.369;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1119,123,0
chrV	101819	.	C	T	1412	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=21.39;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1445,159,0
chrV	101836	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.3929;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=0.137;QD=21.63;ReadPosRankSum=1.677;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1396,156,0
chrV	102020	.	G	A	2595	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.71;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2628,282,0
chrV	102185	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.14;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1523,168,0
chrV	102203	.	A	G	1369	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.765;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.682;QD=19.56;ReadPosRankSum=1.682;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1402,156,0
chrV	102537	.	G	T	1470	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.33;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1503,159,0
chrV	102887	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.52;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1389,153,0
chrV	102999	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.95;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1250,135,0
chrV	103136	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.652;QD=20.40;ReadPosRankSum=1.687;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1604,177,0
chrV	103244	.	G	C	845	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=16.57;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:878,99,0
chrV	103272	.	A	T	744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=41;Dels=0.00;FS=3.053;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.362;QD=18.15;ReadPosRankSum=2.270;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:2,39:41:84:777,84,0
chrV	103548	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=10.2509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1571,171,0
chrV	103937	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.462;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.417;QD=20.55;ReadPosRankSum=1.462;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1636,166,0
chrV	104269	.	T	C	871	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.75;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:904,99,0
chrV	104270	.	T	C	863	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=16.92;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:896,99,0
chrV	104393	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1386,147,0
chrV	104648	.	T	A	794	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.36;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:90:827,90,0
chrV	105087	.	G	A	1749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.609;QD=23.01;ReadPosRankSum=0.983;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1782,189,0
chrV	105192	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.25;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1733,183,0
chrV	105203	.	G	A	1721	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.01;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1754,189,0
chrV	105311	.	A	C	2254	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.07;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2287,252,0
chrV	105319	.	T	C	2417	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.49;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2450,276,0
chrV	105345	.	G	T	2677	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.76;SB=-1.447e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2710,288,0
chrV	105369	.	C	T	2456	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.81;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2489,267,0
chrV	105437	.	G	A	1983	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.0091;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.66;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2016,216,0
chrV	105493	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.21;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1474,165,0
chrV	105743	.	G	A	2075	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.96;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2108,225,0
chrV	105746	.	A	G	2017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.150;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;MQRankSum=-1.039;QD=21.23;ReadPosRankSum=1.696;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2050,228,0
chrV	105816	.	A	G	1118	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=16.69;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1151,129,0
chrV	105842	.	G	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=15.47;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1178,132,0
chrV	105854	.	G	C	1230	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=16.40;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:75:99:1263,144,0
chrV	106188	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.32;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1559,168,0
chrV	106208	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=17.65;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1392,159,0
chrV	106333	.	G	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.55;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1636,180,0
chrV	106448	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.46;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1203,135,0
chrV	106478	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.81;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1635,177,0
chrV	106504	.	G	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.27;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1367,147,0
chrV	106512	.	A	C	1092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.066;QD=14.96;ReadPosRankSum=4.187;SB=-6.009e+02	GT:AD:DP:GQ:PL	1/1:7,66:73:99:1125,129,0
chrV	106597	.	G	A	967	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=15.85;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1000,111,0
chrV	106607	.	A	G	1068	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=0.506;QD=16.43;ReadPosRankSum=1.679;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1101,123,0
chrV	106618	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.71;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1237,138,0
chrV	106822	.	T	C	2315	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.11;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2348,258,0
chrV	107341	.	C	G	1426	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.53;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1459,159,0
chrV	107574	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.6040;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.17;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2068,231,0
chrV	107580	.	G	T	1977	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.1229;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.65;SB=-1.370e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2010,216,0
chrV	107634	.	A	G	1720	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.11;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1753,198,0
chrV	107929	.	A	G	1985	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.73;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2018,225,0
chrV	108381	.	G	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.91;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1601,177,0
chrV	108750	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.129;QD=22.84;ReadPosRankSum=2.365;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1358,153,0
chrV	109005	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.6374;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.70;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1274,147,0
chrV	109461	.	G	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.89;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1412,150,0
chrV	109559	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9209;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.48;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1610,171,0
chrV	110594	.	A	T	2201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.0093;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.463;QD=21.37;ReadPosRankSum=1.665;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2234,243,0
chrV	110916	.	T	C	2202	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2235,246,0
chrV	110985	.	G	A	1951	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.79;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1984,213,0
chrV	111022	.	A	T	2910	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.28;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2943,318,0
chrV	111083	.	A	G	3019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.269;QD=22.04;ReadPosRankSum=1.706;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:1,134:137:99:3052,339,0
chrV	111155	.	T	G	3311.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.37;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,146:148:99:3311,366,0
chrV	111320	.	C	G	3027	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.76;SB=-1.532e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3060,336,0
chrV	111431	.	G	A	2592	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2625,279,0
chrV	116034	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=20.12;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1200,129,0
chrV	116208	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.674;QD=21.49;ReadPosRankSum=1.684;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1580,177,0
chrV	116637	.	C	T	1702	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.01;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1735,186,0
chrV	117072	.	C	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1442;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.13;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1850,198,0
chrV	117134	.	T	C	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=83;Dels=0.00;FS=2.616;HaplotypeScore=10.2305;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.988;QD=17.25;ReadPosRankSum=2.913;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:3,78:83:99:1465,168,0
chrV	117288	.	T	C	2375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.367;QD=23.99;ReadPosRankSum=1.697;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2408,270,0
chrV	117318	.	C	T	3010	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.3613;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.80;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,131:132:99:3043,330,0
chrV	117889	.	C	T	2186	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.77;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,93:96:99:2219,240,0
chrV	118141	.	A	G	1261	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=18.82;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1294,144,0
chrV	118149	.	G	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=16.98;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1120,120,0
chrV	118211	.	G	A	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=4.420;HaplotypeScore=79.4467;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;MQRankSum=-0.981;QD=0.21;ReadPosRankSum=0.814;SB=-8.048e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:6:49,6,0
chrV	118286	.	T	C	3804.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=187;Dels=0.01;FS=3.032;HaplotypeScore=11.7699;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=0.469;QD=20.34;ReadPosRankSum=2.423;SB=-2.250e+03	GT:AD:DP:GQ:PL	1/1:2,184:186:99:3804,429,0
chrV	118304	.	A	G	4296.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.715;DP=199;Dels=0.00;FS=3.032;HaplotypeScore=9.9290;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.401;QD=21.59;ReadPosRankSum=1.662;SB=-2.469e+03	GT:AD:DP:GQ:PL	1/1:1,198:199:99:4296,486,0
chrV	118421	.	T	C	2110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.650;QD=21.98;ReadPosRankSum=1.660;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2143,237,0
chrV	118464	.	C	T	1815	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.86;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1848,204,0
chrV	118511	.	A	G	2550	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=20.08;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2583,288,0
chrV	118593	.	T	C	13.94	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.707;DP=113;Dels=0.00;FS=8.264;HaplotypeScore=119.4004;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;MQRankSum=0.532;QD=0.12;ReadPosRankSum=-2.625;SB=1.24	GT:AD:DP:GQ:PL	1/1:105,8:113:6:45,6,0
chrV	118597	.	T	C	38.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.387;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=50.8280;MLEAC=2;MLEAF=1.00;MQ=35.50;MQ0=0;MQRankSum=0.124;QD=0.32;ReadPosRankSum=-1.703;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:116,4:120:9:71,9,0
chrV	118602	.	A	T	15.23	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.189;DP=124;Dels=0.00;FS=9.187;HaplotypeScore=39.7252;MLEAC=1;MLEAF=0.500;MQ=36.55;MQ0=0;MQRankSum=-1.076;QD=0.12;ReadPosRankSum=-0.170;SB=13.96	GT:AD:DP:GQ:PL	1/1:13,4:124:6:46,6,0
chrV	118608	.	G	A	818	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.3746;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=6.01;SB=-1.616e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:93:851,93,0
chrV	118762	.	T	C	1802	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.38;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1835,204,0
chrV	118782	.	A	G	1560	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.57;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1593,177,0
chrV	118809	.	A	G	1700	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.48;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1733,192,0
chrV	118846	.	C	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=17.19;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1649,174,0
chrV	118856	.	C	T	2212	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.13;SB=-1.604e+03	GT:AD:DP:GQ:PL	1/1:0,120:122:99:2245,243,0
chrV	119169	.	T	A	2303	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.73;SB=-1.441e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2336,249,0
chrV	119334	.	C	T	1869	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.79;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1902,213,0
chrV	119379	.	A	G	1240	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.797;QD=19.68;ReadPosRankSum=1.622;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1273,144,0
chrV	119388	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.11;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1199,129,0
chrV	119409	.	A	G	981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=2.847;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.091;QD=16.35;ReadPosRankSum=2.162;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1014,114,0
chrV	119453	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.3587;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=15.93;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1005,114,0
chrV	119517	.	T	C	983	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.20;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1016,114,0
chrV	119673	.	A	G	1179	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.367;QD=17.86;ReadPosRankSum=1.680;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1212,135,0
chrV	119706	.	G	A	980	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.49;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1013,111,0
chrV	119741	.	T	A	976	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.2322;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.92;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1009,108,0
chrV	120129	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.33;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1057,120,0
chrV	120222	.	G	T	771	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:804,87,0
chrV	120295	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.73;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1576,168,0
chrV	120324	.	G	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.98;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1901,213,0
chrV	120363	.	C	T	2290	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=120.0018;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=16.72;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2323,246,0
chrV	120392	.	T	A	2067	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=15.90;SB=-1.603e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2100,228,0
chrV	120417	.	A	G	1684	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.3494;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=15.89;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1717,192,0
chrV	120418	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=6.146;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=-0.973;QD=16.18;ReadPosRankSum=2.403;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:2,103:106:99:1748,192,0
chrV	120663	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.724;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.050;QD=19.15;ReadPosRankSum=1.680;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1297,144,0
chrV	120900	.	A	T	1872	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1135;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.83;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1905,204,0
chrV	121032	.	T	C	1306	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.677;DP=65;Dels=0.00;FS=12.354;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=0.050;QD=20.09;ReadPosRankSum=3.602;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:5,59:65:99:1339,150,0
chrV	121096	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.39;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1891,201,0
chrV	121266	.	A	T	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.322;QD=18.98;ReadPosRankSum=1.692;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1665,189,0
chrV	121304	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=3.812;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.448;QD=17.28;ReadPosRankSum=1.693;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1571,174,0
chrV	121308	.	A	T	1736	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=18.87;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1769,189,0
chrV	121351	.	G	A	1808	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.4833;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.03;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,92:95:99:1841,204,0
chrV	121371	.	T	A	1969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.954;QD=22.12;ReadPosRankSum=1.538;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2002,216,0
chrV	121409	.	A	G	1802	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.71;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1835,201,0
chrV	122148	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1215,132,0
chrV	122229	.	T	C	439	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=15.68;SB=-1.850e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:54:472,54,0
chrV	122325	.	A	C	754	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:87:787,87,0
chrV	122712	.	T	C	3437.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.32;SB=-1.643e+03	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3437,384,0
chrV	123266	.	G	A	1763	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.15;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1796,192,0
chrV	123378	.	T	C	983	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.91;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1016,111,0
chrV	123483	.	T	C	1198	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.02;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1231,138,0
chrV	123513	.	C	G	1706	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.16;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1739,192,0
chrV	124202	.	C	T	1595	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.6657;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.72;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1628,174,0
chrV	124285	.	G	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.57;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1133,126,0
chrV	124517	.	C	T	1441	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.74;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1474,159,0
chrV	124766	.	T	C	1598	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.49;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1631,180,0
chrV	124970	.	A	G	1520	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3001;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.54;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1553,177,0
chrV	125141	.	A	G	1408	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.83;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1441,165,0
chrV	125211	.	A	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.70;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1155,126,0
chrV	125221	.	C	G	1125	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.74;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1158,126,0
chrV	125279	.	C	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=15.96;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1182,126,0
chrV	125295	.	G	T	1151	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=15.55;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1184,126,0
chrV	125368	.	A	T	1385	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.67;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1418,153,0
chrV	125535	.	A	G	1232	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.20;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1265,144,0
chrV	125566	.	C	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.00;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1251,141,0
chrV	125756	.	T	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.17;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1474,159,0
chrV	126051	.	C	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.71;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1400,156,0
chrV	126069	.	T	C	901	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=16.69;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:934,108,0
chrV	126071	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.89;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1161,126,0
chrV	126254	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.29;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1353,150,0
chrV	126316	.	T	G	797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=3.647;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.575;QD=18.11;ReadPosRankSum=1.654;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:93:830,93,0
chrV	126477	.	C	G	1167	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.4343;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=16.44;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1200,138,0
chrV	126600	.	C	T	1865	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.69;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1898,207,0
chrV	126652	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=4.135;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=1.003;QD=20.98;ReadPosRankSum=1.672;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1229,135,0
chrV	127024	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=19.88;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1405,150,0
chrV	127039	.	A	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.99;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1472,159,0
chrV	127042	.	T	C	1342	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=18.90;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1375,153,0
chrV	127050	.	A	G	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.577;QD=18.17;ReadPosRankSum=1.682;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1287,144,0
chrV	127286	.	T	C	2216	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.31;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:0,119:121:99:2249,255,0
chrV	127516	.	C	T	925	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=17.45;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:958,108,0
chrV	127548	.	G	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.87;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1285,138,0
chrV	127687	.	G	C	1705	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.16;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1738,198,0
chrV	128140	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=75;Dels=0.00;FS=3.378;HaplotypeScore=3.4799;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.749;QD=20.47;ReadPosRankSum=-0.421;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1568,155,0
chrV	128257	.	T	A	1707	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.82;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1740,186,0
chrV	128953	.	T	C	1194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.1850;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.672;QD=20.59;ReadPosRankSum=-1.124;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1227,138,0
chrV	129112	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.04;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1443,153,0
chrV	129286	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.40;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1852,204,0
chrV	129322	.	T	C	1613	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.68;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1646,186,0
chrV	129442	.	T	C	2348	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.72;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2381,267,0
chrV	129481	.	C	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.87;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1863,207,0
chrV	129523	.	A	G	1483	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.54;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1516,174,0
chrV	129628	.	A	G	1315	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.21;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1348,150,0
chrV	130108	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.14;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1722,183,0
chrV	130174	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.385;QD=19.58;ReadPosRankSum=1.684;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1443,165,0
chrV	130380	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.40;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1155,129,0
chrV	130396	.	A	G	1109	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.16;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1142,129,0
chrV	130563	.	T	C	666	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=13.59;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,45:49:78:699,78,0
chrV	130624	.	A	G	1423	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.5021;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.24;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1456,162,0
chrV	130887	.	G	A	1053	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.93;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1086,123,0
chrV	131067	.	G	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=48.3505;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.37;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1622,174,0
chrV	131177	.	A	C	2163	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.0374;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.31;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2196,246,0
chrV	131539	.	G	A	2752	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=61.35;MQ0=0;QD=22.02;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2785,315,0
chrV	131724	.	A	G	4139.01	PASS	AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=20.59;SB=-1.465e+03	GT:AD:DP:GQ:PL	1/1:0,191:201:99:4139,468,0
chrV	132523	.	A	G	934	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=15.57;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:967,105,0
chrV	132567	.	T	C	324	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=29.8968;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;MQRankSum=-0.817;QD=7.90;ReadPosRankSum=-0.030;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:2,39:41:42:357,42,0
chrV	132569	.	T	C	270	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=41;Dels=0.00;FS=5.005;HaplotypeScore=24.1434;MLEAC=2;MLEAF=1.00;MQ=34.31;MQ0=0;MQRankSum=-1.604;QD=6.59;ReadPosRankSum=1.725;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:2,39:41:36:303,36,0
chrV	132571	.	T	C	195.79	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.350;DP=39;Dels=0.00;FS=6.145;HaplotypeScore=24.1434;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=-1.878;QD=5.02;ReadPosRankSum=2.324;SB=-8.680e+01	GT:AD:DP:GQ:PL	1/1:2,37:39:10:228,10,0
chrV	132573	.	T	C	182.07	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=39;Dels=0.00;FS=5.724;HaplotypeScore=24.1434;MLEAC=1;MLEAF=0.500;MQ=32.45;MQ0=0;MQRankSum=-2.695;QD=4.67;ReadPosRankSum=0.852;SB=-6.307e+01	GT:AD:DP:GQ:PL	0/1:8,31:39:15:212,0,15
chrV	132575	.	T	C	185.05	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DP=40;Dels=0.00;FS=5.905;HaplotypeScore=26.2108;MLEAC=1;MLEAF=0.500;MQ=33.42;MQ0=0;MQRankSum=-0.152;QD=4.63;ReadPosRankSum=-0.287;SB=-6.605e+01	GT:AD:DP:GQ:PL	0/1:8,32:40:17:215,0,17
chrV	132577	.	T	C	169.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;DP=45;Dels=0.00;FS=8.711;HaplotypeScore=31.0364;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=0;MQRankSum=-1.237;QD=3.76;ReadPosRankSum=0.102;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:22,23:45:63:199,0,63
chrV	132662	.	A	G	2192	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=24.63;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2225,246,0
chrV	132762	.	A	G	918	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.53;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:951,108,0
chrV	132767	.	T	A	991	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.65;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1024,108,0
chrV	132830	.	C	T	842	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.05;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:875,93,0
chrV	133048	.	T	C	1451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=86;Dels=0.00;FS=3.612;HaplotypeScore=7.2630;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=1.162;QD=16.87;ReadPosRankSum=0.428;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1484,168,0
chrV	133078	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.43;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1532,171,0
chrV	133248	.	G	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.13;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1512,162,0
chrV	133566	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.90;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1719,189,0
chrV	133686	.	A	G	691	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.72;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:724,81,0
chrV	134484	.	G	A	2721	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.49;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2754,291,0
chrV	134580	.	A	G	2346	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.9527;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.88;SB=-1.256e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2379,267,0
chrV	134795	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=5.088;HaplotypeScore=5.8632;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.000;QD=18.15;ReadPosRankSum=1.635;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:99:1358,153,0
chrV	134805	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.706;DP=81;Dels=0.00;FS=5.105;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.091;QD=17.63;ReadPosRankSum=-0.706;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1461,135,0
chrV	134844	.	T	G	1747	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=17.65;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1780,201,0
chrV	135422	.	G	A	73.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.263;DP=51;Dels=0.00;FS=10.692;HaplotypeScore=37.2700;MLEAC=1;MLEAF=0.500;MQ=44.48;MQ0=0;MQRankSum=0.218;QD=1.43;ReadPosRankSum=-3.309;SB=-4.007e+00	GT:AD:DP:GQ:PL	0/1:40,11:51:99:103,0,699
chrV	135537	.	C	G	2342	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=24.14;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2375,264,0
chrV	135550	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=24.09;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1816,198,0
chrV	136024	.	T	C	2685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.618;QD=23.35;ReadPosRankSum=1.702;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2718,300,0
chrV	136262	.	G	A	195.03	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=86.9821;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=1.57;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:24:228,24,0
chrV	136419	.	T	A	2402	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6663;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.10;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2435,261,0
chrV	136461	.	C	G	2277	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.47;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,93:97:99:2310,258,0
chrV	136509	.	A	T	12.99	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.398;DP=90;Dels=0.00;FS=7.158;HaplotypeScore=79.3379;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;MQRankSum=-0.374;QD=0.14;ReadPosRankSum=-3.474;SB=-5.976e+01	GT:AD:DP:GQ:PL	1/1:83,7:90:6:44,6,0
chrV	136691	.	C	T	2077	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.44;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2110,228,0
chrV	136730	.	G	A	1370	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.45;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1403,150,0
chrV	136755	.	A	G	1220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.515;QD=16.49;ReadPosRankSum=1.639;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1253,141,0
chrV	136768	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=-1.022;QD=15.43;ReadPosRankSum=1.688;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1252,144,0
chrV	137525	.	A	G	2363	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=17.2303;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.03;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2396,270,0
chrV	137752	.	C	T	1983	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4168;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.32;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2016,222,0
chrV	137844	.	G	A	2476	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.51;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2509,276,0
chrV	137916	.	G	A	2896	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.35;SB=-1.482e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2929,309,0
chrV	138269	.	T	C	2739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=4.421;HaplotypeScore=7.5035;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=1.645;QD=23.02;ReadPosRankSum=1.674;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2772,309,0
chrV	138369	.	A	G	3277.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=158;Dels=0.00;FS=2.862;HaplotypeScore=18.9831;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;MQRankSum=0.891;QD=20.74;ReadPosRankSum=2.369;SB=-1.594e+03	GT:AD:DP:GQ:PL	1/1:2,151:158:99:3277,360,0
chrV	138567	.	G	A	2582	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.18;SB=-1.556e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:2615,282,0
chrV	138640	.	G	A	2426	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.89;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2459,261,0
chrV	138653	.	T	C	2285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=4.771;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.666;QD=21.76;ReadPosRankSum=1.699;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2318,261,0
chrV	138659	.	A	G	2219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.103;QD=20.93;ReadPosRankSum=2.403;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2252,258,0
chrV	139176	.	G	T	1780	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1813,192,0
chrV	139269	.	A	C	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=7.454;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.176;QD=22.59;ReadPosRankSum=2.215;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1479,165,0
chrV	139492	.	T	G	1718	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.9859;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.26;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1751,189,0
chrV	139659	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.62;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1073,120,0
chrV	140109	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.57;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1407,153,0
chrV	140298	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.58;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1365,144,0
chrV	140379	.	G	T	1499	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=90.0793;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=18.97;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1532,168,0
chrV	140430	.	T	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=15.78;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1090,117,0
chrV	140700	.	C	T	1387	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.02;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1420,150,0
chrV	141117	.	A	G	1403	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.49;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1436,162,0
chrV	141189	.	G	A	1879	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8686;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.64;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1912,204,0
chrV	141485	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.28;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1614,174,0
chrV	141527	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.11;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1447,162,0
chrV	141779	.	T	C	1557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.762;QD=20.76;ReadPosRankSum=1.686;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1590,177,0
chrV	142188	.	C	T	1574	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.67;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1607,177,0
chrV	142227	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.23;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1392,153,0
chrV	142278	.	T	G	1064	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.46;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1097,123,0
chrV	142607	.	C	A	988	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.48;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1021,108,0
chrV	143292	.	A	G	986	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.98;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1019,114,0
chrV	143305	.	A	G	876	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.04;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:909,105,0
chrV	143606	.	T	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.2651;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.10;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1608,183,0
chrV	143676	.	C	T	2157	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.79;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2190,243,0
chrV	144003	.	C	A	2748	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.90;SB=-1.462e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2781,297,0
chrV	144159	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.67;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1883,201,0
chrV	144265	.	T	C	2651	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.100;QD=21.91;ReadPosRankSum=1.646;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2684,300,0
chrV	144521	.	A	G	1965	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.59;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1998,219,0
chrV	145151	.	C	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.05;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1246,135,0
chrV	145413	.	C	G	1006	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.0392;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.40;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1039,114,0
chrV	145503	.	A	G	1117	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.31;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1150,126,0
chrV	145541	.	G	A	1370	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.08;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1403,150,0
chrV	145569	.	C	T	1181	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.36;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1214,135,0
chrV	145602	.	C	T	958	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.08;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:991,108,0
chrV	145635	.	C	T	1460	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.93;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1493,162,0
chrV	145745	.	T	G	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.466;QD=22.21;ReadPosRankSum=1.666;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1188,132,0
chrV	146196	.	G	C	2684	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.14;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2717,297,0
chrV	146273	.	T	C	1825	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.07;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1858,207,0
chrV	146717	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.115;QD=18.52;ReadPosRankSum=1.559;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1144,129,0
chrV	146845	.	C	G	1551	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.96;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1584,183,0
chrV	147605	.	C	T	2423	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.25;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2456,261,0
chrV	147672	.	C	T	2302	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.72;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2335,258,0
chrV	148485	.	T	C	2422	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.98;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2455,270,0
chrV	148773	.	A	G	2481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.401;QD=22.76;ReadPosRankSum=1.310;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:2,106:109:99:2514,288,0
chrV	150005	.	C	T	865	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:96:898,96,0
chrV	150086	.	A	G	1028	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.441;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.229;QD=19.40;ReadPosRankSum=1.667;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1061,120,0
chrV	150304	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.32;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1291,144,0
chrV	150355	.	A	G	842	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.14;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:875,99,0
chrV	151441	.	A	G	1577	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=22.53;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1610,180,0
chrV	151454	.	G	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=23.30;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1594,168,0
chrV	151518	.	T	G	1727	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-0.110;QD=21.86;ReadPosRankSum=1.688;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1760,198,0
chrV	151653	.	T	A	3282.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.01;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.63;SB=-1.631e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3282,351,0
chrV	151723	.	T	C	1404	SnpCluster	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=16.14;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1437,162,0
chrV	151728	.	T	C	1301	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=16.26;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1334,150,0
chrV	151731	.	C	T	1245	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=16.17;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1278,138,0
chrV	151736	.	A	G	1127	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=17.08;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1160,129,0
chrV	152027	.	C	T	139.13	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=12.65;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,9:11:18:172,18,0
chrV	152072	.	A	T	555	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=25.23;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:63:588,63,0
chrV	152115	.	G	A	871	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.53;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,47:47:96:904,96,0
chrV	152168	.	C	A	816	filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=14.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,57:57:90:849,90,0
chrV	152206	.	G	A	1049	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.57;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1082,114,0
chrV	152275	.	T	C	960	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.87;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:993,111,0
chrV	152616	.	G	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.92;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1377,147,0
chrV	152630	.	A	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.33;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1456,156,0
chrV	152800	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.5015;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.73;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1775,192,0
chrV	152924	.	G	A	346	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=25.9937;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=4.61;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:42:379,42,0
chrV	153129	.	A	C	1785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=3.274;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.610;QD=20.76;ReadPosRankSum=1.691;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1818,204,0
chrV	153241	.	A	G	1184	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.07;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1217,135,0
chrV	153284	.	A	G	1573	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.13;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1606,177,0
chrV	153551	.	A	G	1805	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0150;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.56;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1838,210,0
chrV	153804	.	A	G	1889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;MQRankSum=0.450;QD=18.89;ReadPosRankSum=1.697;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1922,216,0
chrV	153808	.	A	G	1839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=102;Dels=0.00;FS=2.447;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=-0.961;QD=18.03;ReadPosRankSum=3.367;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:4,94:102:99:1872,210,0
chrV	153840	.	G	A	1991	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.31;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,112:115:99:2024,216,0
chrV	153844	.	G	A	2012	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=17.05;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2045,222,0
chrV	153951	.	G	A	2160	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.29;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2193,243,0
chrV	153952	.	G	C	2226	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=20.05;SB=-1.415e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2259,249,0
chrV	153989	.	G	T	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=89;Dels=0.00;FS=2.966;HaplotypeScore=4.4364;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=2.339;QD=17.46;ReadPosRankSum=2.394;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1587,132,0
chrV	154107	.	C	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3575;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.34;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1445,153,0
chrV	154354	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.559;QD=19.71;ReadPosRankSum=1.621;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1255,141,0
chrV	154390	.	C	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.79;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1297,144,0
chrV	154437	.	C	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.82;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1343,144,0
chrV	154531	.	T	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1441,159,0
chrV	154915	.	A	C	1406	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.68;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1439,159,0
chrV	155130	.	G	C	1723	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.51;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1756,201,0
chrV	155613	.	A	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.28;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1128,123,0
chrV	156155	.	G	A	1477	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.82;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1510,162,0
chrV	156264	.	T	A	1151	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=26.16;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1184,126,0
chrV	156616	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.74;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1685,189,0
chrV	156652	.	T	C	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=89;Dels=0.00;FS=3.059;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.187;QD=20.45;ReadPosRankSum=1.693;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1853,204,0
chrV	156762	.	T	C	2214	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.55;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2247,252,0
chrV	157149	.	G	A	2105	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.7544;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.48;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2138,234,0
chrV	157238	.	G	A	1763	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.77;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1796,192,0
chrV	157279	.	T	C	1788	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.29;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1821,207,0
chrV	157328	.	A	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.12;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1849,195,0
chrV	157488	.	C	T	1004	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.92;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1037,117,0
chrV	157503	.	A	G	971	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.66;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1004,114,0
chrV	157769	.	A	G	1485	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1518,174,0
chrV	157792	.	A	G	1697	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1730,195,0
chrV	158171	.	G	A	1350	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.09;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1383,150,0
chrV	158356	.	C	T	1237	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1270,135,0
chrV	158386	.	T	C	1181	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.237;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.382;QD=20.02;ReadPosRankSum=1.674;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1214,138,0
chrV	158705	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.204;QD=19.91;ReadPosRankSum=1.681;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1387,156,0
chrV	159092	.	A	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.54;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1110,126,0
chrV	159381	.	T	C	1234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;DP=57;Dels=0.00;FS=2.706;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.889;QD=21.65;ReadPosRankSum=0.152;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1267,119,0
chrV	159422	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2869;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.831;QD=19.82;ReadPosRankSum=1.685;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1480,168,0
chrV	159475	.	C	A	1805	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.28;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1838,207,0
chrV	159556	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.95;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1795,201,0
chrV	159624	.	G	A	1184	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.1533;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.10;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1217,132,0
chrV	159810	.	G	A	1752	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.90;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1785,192,0
chrV	159875	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.84;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1367,156,0
chrV	160010	.	T	C	1229	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=18.62;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1262,141,0
chrV	160020	.	G	A	1184	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=17.41;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1217,138,0
chrV	160038	.	T	A	1381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=0.266;QD=17.48;ReadPosRankSum=1.688;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1414,156,0
chrV	160192	.	A	C	2077	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0096;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.98;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2110,237,0
chrV	160282	.	C	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=16.32;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1045,117,0
chrV	160481	.	G	A	2861	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6078;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.44;SB=-1.621e+03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:2894,327,0
chrV	160576	.	G	A	1171	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.09;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1204,129,0
chrV	160643	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.27;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1087,117,0
chrV	160729	.	T	C	1964	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=98;Dels=0.00;FS=9.815;HaplotypeScore=6.8527;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=1.018;QD=20.04;ReadPosRankSum=2.349;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:99:1997,225,0
chrV	161191	.	G	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.57;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1147,126,0
chrV	161419	.	C	T	1895	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.29;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1928,204,0
chrV	161767	.	T	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.26;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1304,147,0
chrV	161851	.	C	T	1473	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.32;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1506,165,0
chrV	162008	.	T	C	1223	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.73;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1256,138,0
chrV	162236	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.33;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1444,162,0
chrV	162250	.	T	C	1295	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=19.92;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1328,147,0
chrV	162251	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.30;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1332,144,0
chrV	163136	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.92;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1263,138,0
chrV	163290	.	A	G	1574	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.17;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1607,177,0
chrV	165294	.	G	A	1671	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1704,186,0
chrV	165547	.	T	G	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.580;DP=86;Dels=0.00;FS=8.018;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.517;QD=18.08;ReadPosRankSum=3.728;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:5,81:86:99:1588,177,0
chrV	165567	.	G	A	1841	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.01;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1874,198,0
chrV	165924	.	G	A	1830	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.33;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1863,204,0
chrV	167107	.	A	G	2835	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.86;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2868,321,0
chrV	167374	.	C	T	2478	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.36;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2511,267,0
chrV	167641	.	A	C	2759	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.38;SB=-1.436e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2792,312,0
chrV	167752	.	A	G	4214.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;DP=199;Dels=0.00;FS=14.255;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;MQRankSum=-0.216;QD=21.18;ReadPosRankSum=3.389;SB=-1.952e+03	GT:AD:DP:GQ:PL	1/1:4,194:199:99:4214,465,0
chrV	167761	.	C	T	4471.01	PASS	AC=2;AF=1.00;AN=2;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=5.5851;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=22.58;SB=-1.839e+03	GT:AD:DP:GQ:PL	1/1:0,197:198:99:4471,475,0
chrV	168779	.	C	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.07;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1291,141,0
chrV	168930	.	G	A	2016	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=19.57;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2049,225,0
chrV	169005	.	A	G	2047	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.9763;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.25;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,88:92:99:2080,237,0
chrV	169109	.	C	T	1685	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.33;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1718,183,0
chrV	169164	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5163;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.33;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1889,210,0
chrV	169431	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.07;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1666,177,0
chrV	169452	.	G	A	1611	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.18;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1644,177,0
chrV	169464	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=3.876;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.565;QD=17.57;ReadPosRankSum=1.690;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1491,168,0
chrV	169611	.	A	G	1501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=4.472;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.396;QD=21.44;ReadPosRankSum=1.584;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1534,174,0
chrV	169674	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.69;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1486,165,0
chrV	169761	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.15;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1344,147,0
chrV	171377	.	C	T	810	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.82;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:90:843,90,0
chrV	171549	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.92;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1414,162,0
chrV	171972	.	G	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.59;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1186,126,0
chrV	172613	.	A	G	2749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=11.5997;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.811;QD=18.33;ReadPosRankSum=2.253;SB=-1.607e+03	GT:AD:DP:GQ:PL	1/1:2,148:150:99:2782,315,0
chrV	173217	.	T	G	1033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=5.408;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.522;QD=15.65;ReadPosRankSum=1.680;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1066,120,0
chrV	173402	.	C	T	2006	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.29;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2039,219,0
chrV	173562	.	C	T	2280	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.05;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2313,252,0
chrV	173645	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.08;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1783,192,0
chrV	173889	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.94;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1235,138,0
chrV	173893	.	C	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.35;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1299,138,0
chrV	173989	.	A	G	2543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=115;Dels=0.00;FS=2.672;HaplotypeScore=4.3343;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.658;QD=22.11;ReadPosRankSum=2.385;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:2,112:115:99:2576,285,0
chrV	174260	.	T	C	1923	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.85;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1956,219,0
chrV	174383	.	A	T	1268	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.25;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1301,138,0
chrV	174633	.	G	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=18.02;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1475,168,0
chrV	174650	.	C	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.10;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1626,171,0
chrV	174780	.	C	T	1003	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.57;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1036,111,0
chrV	174794	.	A	G	842	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=15.59;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:875,99,0
chrV	174844	.	C	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=15.46;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1084,117,0
chrV	175154	.	A	G	2342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.01;FS=3.872;HaplotypeScore=5.9584;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.624;QD=23.19;ReadPosRankSum=1.697;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2375,261,0
chrV	175314	.	C	G	1566	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=17.02;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,88:92:99:1599,177,0
chrV	175352	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=35.59;MQ0=0;QD=13.50;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1005,114,0
chrV	175361	.	G	A	910	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=14.22;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:943,102,0
chrV	175373	.	T	G	750	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.94;MQ0=0;QD=12.93;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:87:783,87,0
chrV	175376	.	C	T	769	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=14.24;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:84:802,84,0
chrV	175379	.	A	G	720	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;MQRankSum=0.128;QD=13.33;ReadPosRankSum=1.668;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:84:753,84,0
chrV	175383	.	T	C	690	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=14.08;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:723,81,0
chrV	175384	.	C	A	732	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=14.94;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:765,81,0
chrV	175385	.	T	A	723	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=14.76;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:756,81,0
chrV	175389	.	T	C	703	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=12.12;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:81:736,81,0
chrV	175414	.	G	A	690	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=12.78;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:78:723,78,0
chrV	175434	.	G	A	640	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=12.31;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:72:673,72,0
chrV	175443	.	A	T	777	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=13.17;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:87:810,87,0
chrV	175496	.	T	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=16.94;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1337,153,0
chrV	175565	.	G	A	1211	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.12;MQ0=0;QD=13.61;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1244,138,0
chrV	175575	.	A	G	1065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;DP=88;Dels=0.00;FS=8.916;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;MQRankSum=-2.341;QD=12.10;ReadPosRankSum=3.354;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:4,84:88:99:1098,123,0
chrV	175587	.	T	A	899	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3772;MLEAC=2;MLEAF=1.00;MQ=32.14;MQ0=0;QD=13.03;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:932,105,0
chrV	175593	.	T	A	822	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7052;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;QD=12.65;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:96:855,96,0
chrV	175595	.	T	C	790	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.6117;MLEAC=2;MLEAF=1.00;MQ=31.66;MQ0=0;QD=12.15;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:93:823,93,0
chrV	175646	.	A	T	334	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=5.57;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:39:367,39,0
chrV	175655	.	C	T	219.01	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=4.76;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:27:252,27,0
chrV	175674	.	T	C	325	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=60;Dels=0.00;FS=2.634;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;MQRankSum=-2.476;QD=5.42;ReadPosRankSum=2.883;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:3,57:60:39:358,39,0
chrV	175700	.	T	C	544	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;DP=89;Dels=0.00;FS=5.564;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=3;MQRankSum=-2.071;QD=6.11;ReadPosRankSum=2.660;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:3,86:89:66:577,66,0
chrV	175736	.	T	C	1208	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.804;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=5;MQRankSum=2.447;QD=11.73;ReadPosRankSum=-2.963;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:12,91:103:99:1241,141,0
chrV	175772	.	T	C	464	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.147;DP=130;Dels=0.00;FS=0.969;HaplotypeScore=227.4105;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=6;MQRankSum=3.133;QD=3.57;ReadPosRankSum=2.633;SB=-3.300e+01	GT:AD:DP:GQ:PL	1/1:101,29:130:54:497,54,0
chrV	175781	.	C	T	68.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;DP=122;Dels=0.01;FS=1.000;HaplotypeScore=7.0263;MLEAC=1;MLEAF=0.500;MQ=46.09;MQ0=4;MQRankSum=-2.204;QD=0.56;ReadPosRankSum=-0.050;SB=-4.730e+02	GT:AD:DP:GQ:PL	0/1:27,93:121:98:98,0,408
chrV	175840	.	T	C	2146	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.34;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2179,246,0
chrV	176447	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.2911;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.149;QD=20.41;ReadPosRankSum=1.696;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1972,222,0
chrV	177073	.	G	A	2553	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.10;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2586,276,0
chrV	177079	.	G	A	2537	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.46;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2570,279,0
chrV	177351	.	C	T	2021	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.41;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2054,216,0
chrV	177453	.	T	A	2083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.015;DP=105;Dels=0.00;FS=6.596;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=-0.205;QD=19.84;ReadPosRankSum=2.401;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:2,103:105:99:2116,234,0
chrV	177489	.	T	C	2150	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.63;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2183,243,0
chrV	177849	.	G	A	3001	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.7718;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.45;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:3034,336,0
chrV	178044	.	A	G	1310	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=3.239;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.133;QD=16.58;ReadPosRankSum=1.688;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1343,147,0
chrV	178086	.	T	C	2121	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.00;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2154,240,0
chrV	178287	.	T	C	2162	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5869;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.02;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2195,243,0
chrV	178671	.	T	A	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=-0.977;QD=18.01;ReadPosRankSum=1.599;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1456,165,0
chrV	178691	.	G	A	1723	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=17.76;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1756,198,0
chrV	178728	.	T	A	1605	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=16.89;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1638,177,0
chrV	178729	.	A	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=16.67;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1600,180,0
chrV	178786	.	T	C	2702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=144;Dels=0.00;FS=10.384;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.106;QD=18.76;ReadPosRankSum=2.895;SB=-1.547e+03	GT:AD:DP:GQ:PL	1/1:3,140:144:99:2735,306,0
chrV	178894	.	T	G	2101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=101;Dels=0.00;FS=7.077;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.207;QD=20.80;ReadPosRankSum=2.304;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:2,99:101:99:2134,240,0
chrV	179014	.	A	G	1992	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.97;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2025,228,0
chrV	179020	.	A	G	2081	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.81;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2114,237,0
chrV	179042	.	G	A	2190	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=20.28;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2223,240,0
chrV	179058	.	A	C	1710	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=17.81;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1743,195,0
chrV	179137	.	C	T	1763	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=22.32;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1796,192,0
chrV	179143	.	G	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.61;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1700,192,0
chrV	179334	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=22.80;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1310,147,0
chrV	179359	.	C	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5285;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.53;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1080,120,0
chrV	179485	.	A	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=19.04;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1556,174,0
chrV	179488	.	C	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.55;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1558,165,0
chrV	179545	.	A	G	1938	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6790;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.00;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1971,222,0
chrV	179605	.	T	C	2104	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2137,240,0
chrV	179647	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.60;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1773,201,0
chrV	179788	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.92;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1467,162,0
chrV	179823	.	C	A	1386	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.7397;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.35;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1419,150,0
chrV	180139	.	T	C	1850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.236;QD=21.02;ReadPosRankSum=1.693;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1883,210,0
chrV	180216	.	A	G	2140	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.01;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2173,243,0
chrV	180460	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.30;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1332,144,0
chrV	181108	.	C	T	988	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.16;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1021,114,0
chrV	181135	.	T	C	1042	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.30;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1075,120,0
chrV	181486	.	G	A	2250	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0738;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.96;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2283,258,0
chrV	181705	.	T	C	1477	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.38;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1510,165,0
chrV	182014	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.83;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1670,189,0
chrV	182044	.	G	C	1683	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.05;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1716,192,0
chrV	182242	.	G	A	2166	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.83;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2199,234,0
chrV	182338	.	T	C	2614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=123;Dels=0.00;FS=2.929;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.131;QD=21.25;ReadPosRankSum=2.389;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:2,120:123:99:2647,297,0
chrV	182340	.	A	T	2724	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.51;SB=-1.393e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2757,297,0
chrV	182381	.	A	T	1890	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.00;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1923,207,0
chrV	182404	.	T	C	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.487;QD=17.32;ReadPosRankSum=1.678;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1159,132,0
chrV	182701	.	A	G	1634	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.38;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1667,183,0
chrV	182839	.	G	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.37;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1194,129,0
chrV	183270	.	G	A	1339	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.69;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1372,144,0
chrV	183277	.	A	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.41;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1391,153,0
chrV	183424	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.50;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1476,168,0
chrV	183549	.	C	T	1015	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.30;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1048,111,0
chrV	183617	.	A	G	1594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=0.759;QD=17.71;ReadPosRankSum=1.654;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1627,183,0
chrV	183864	.	T	C	1000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=0.510;QD=19.61;ReadPosRankSum=2.354;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:1033,114,0
chrV	183869	.	A	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=18.38;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1044,120,0
chrV	183910	.	C	G	1268	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.51;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1301,147,0
chrV	183957	.	A	G	1802	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.81;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1835,207,0
chrV	184027	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3400;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.17;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1605,180,0
chrV	184168	.	C	T	1099	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.28;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1132,123,0
chrV	184337	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.7710;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.95;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1454,165,0
chrV	184684	.	T	C	1011	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.38;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1044,114,0
chrV	185755	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.59;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1083,117,0
chrV	185983	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.49;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1372,153,0
chrV	186279	.	G	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.20;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1454,162,0
chrV	186424	.	A	G	1185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=62;Dels=0.00;FS=4.698;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=1.086;QD=19.11;ReadPosRankSum=1.556;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:1,58:62:99:1218,138,0
chrV	186591	.	C	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=20.57;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2090,225,0
chrV	186610	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=17.00;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1852,201,0
chrV	186622	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.6308;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.168;QD=14.27;ReadPosRankSum=2.927;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:3,93:97:99:1417,159,0
chrV	186649	.	A	G	1553	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=14.25;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1586,183,0
chrV	186791	.	T	G	1060	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.63;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1093,123,0
chrV	186812	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.62;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1057,117,0
chrV	187027	.	T	C	3910.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.212;DP=188;Dels=0.00;FS=10.104;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.418;QD=20.80;ReadPosRankSum=4.439;SB=-1.637e+03	GT:AD:DP:GQ:PL	1/1:7,181:188:99:3910,444,0
chrV	187071	.	G	T	3078	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.44;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:3111,330,0
chrV	187124	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=23.58;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1660,183,0
chrV	187156	.	C	T	1321	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.4201;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.028;QD=22.39;ReadPosRankSum=0.206;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1354,150,0
chrV	187246	.	G	A	1603	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.55;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1636,180,0
chrV	187268	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.81;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1881,201,0
chrV	187309	.	A	C	1778	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.2361;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=1.798;QD=17.43;ReadPosRankSum=2.329;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:1811,180,0
chrV	187357	.	G	A	2432	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.8757;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.85;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2465,264,0
chrV	187466	.	G	A	1350	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=19.57;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1383,153,0
chrV	187482	.	T	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=22.05;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1268,135,0
chrV	187519	.	T	C	1011	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;QD=18.05;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1044,120,0
chrV	187559	.	C	T	953	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=19.06;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:986,111,0
chrV	187567	.	G	C	874	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=18.21;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:907,102,0
chrV	187631	.	A	G	315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=3.163;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.55;MQ0=0;MQRankSum=-1.255;QD=10.86;ReadPosRankSum=1.614;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:1,28:29:42:348,42,0
chrV	187642	.	T	C	341	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=12.63;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:45:374,45,0
chrV	187645	.	T	C	362	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=12.93;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:48:395,48,0
chrV	187648	.	G	A	343	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=13.19;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:42:376,42,0
chrV	187679	.	C	T	620	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=16.32;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:72:653,72,0
chrV	187705	.	A	G	839	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6567;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.85;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:872,99,0
chrV	187751	.	A	T	1026	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=15.78;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1059,111,0
chrV	187774	.	T	A	757	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=58.8402;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=11.65;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:87:790,87,0
chrV	187805	.	C	T	511	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=7.74;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:60:544,60,0
chrV	187817	.	T	A	491	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;QD=7.22;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:54:524,54,0
chrV	187824	.	C	G	487	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;QD=7.27;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:57:520,57,0
chrV	187838	.	A	G	597	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=9.48;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:69:630,69,0
chrV	187885	.	T	C	564	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;QD=10.85;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:66:597,66,0
chrV	187939	.	A	G	367	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=9.66;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:45:400,45,0
chrV	188016	.	T	C	627	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=17.42;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:660,75,0
chrV	188018	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=17.32;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:691,78,0
chrV	188040	.	G	A	714	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=13.22;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:84:747,84,0
chrV	188051	.	C	T	983	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=15.85;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1016,111,0
chrV	188154	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=23.10;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1604,174,0
chrV	188435	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.54;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1067,120,0
chrV	188732	.	T	C	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.540;QD=21.78;ReadPosRankSum=1.668;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1209,135,0
chrV	188774	.	G	A	758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.077;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.171;QD=19.95;ReadPosRankSum=-1.545;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,36:38:84:791,84,0
chrV	188775	.	C	T	773	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=1.111;QD=19.82;ReadPosRankSum=-1.644;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:84:806,84,0
chrV	189101	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.38;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:87:763,87,0
chrV	189662	.	A	G	857	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.81;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:99:890,102,0
chrV	190070	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.96;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1458,162,0
chrV	190355	.	C	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.87;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1598,180,0
chrV	195341	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=16.36;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1293,138,0
chrV	195356	.	T	C	1197	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=13.76;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1230,138,0
chrV	195368	.	C	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=13.38;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1277,144,0
chrV	195440	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=101;Dels=0.00;FS=3.188;HaplotypeScore=8.6076;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.035;QD=18.45;ReadPosRankSum=1.697;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:1896,213,0
chrV	195529	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.59;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1581,177,0
chrV	195746	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.16;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1547,174,0
chrV	195765	.	A	G	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.458;QD=18.15;ReadPosRankSum=1.692;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1612,183,0
chrV	195830	.	T	G	1660	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=16.27;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1693,195,0
chrV	195975	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.24;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1412,156,0
chrV	196106	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=97;Dels=0.00;FS=2.868;HaplotypeScore=8.5406;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.654;QD=19.97;ReadPosRankSum=2.398;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:2,95:97:99:1970,225,0
chrV	196271	.	C	T	1855	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.32;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1888,204,0
chrV	196352	.	T	C	922	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=15.90;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:955,111,0
chrV	196355	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=17.34;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1108,126,0
chrV	196385	.	A	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=13.74;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1036,120,0
chrV	196391	.	G	A	993	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=13.60;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1026,114,0
chrV	196478	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.09;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,83:87:99:1520,171,0
chrV	196526	.	C	T	1352	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.18;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1385,147,0
chrV	196554	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=15.71;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1180,135,0
chrV	196708	.	G	A	2456	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=23.17;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2489,279,0
chrV	196832	.	C	T	1134	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.00;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1167,129,0
chrV	196983	.	T	C	1448	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.57;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1481,165,0
chrV	196986	.	C	T	1505	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.80;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1538,165,0
chrV	197103	.	T	C	1786	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.61;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1819,204,0
chrV	197145	.	G	A	1244	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.73;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1277,135,0
chrV	197322	.	A	G	942	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.12;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:975,111,0
chrV	197352	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.65;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1059,117,0
chrV	197415	.	A	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.77;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1673,192,0
chrV	197493	.	G	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.12;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1692,180,0
chrV	197799	.	G	A	1872	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.35;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1905,213,0
chrV	197916	.	C	A	2264	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2297,252,0
chrV	198126	.	G	A	2538	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.17;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2571,273,0
chrV	198520	.	G	A	1699	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.76;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1732,186,0
chrV	198538	.	T	C	1563	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.54;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1596,177,0
chrV	198604	.	A	C	60.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=35;Dels=0.00;FS=31.551;HaplotypeScore=12.3966;MLEAC=1;MLEAF=0.500;MQ=58.00;MQ0=0;MQRankSum=0.153;QD=1.71;ReadPosRankSum=-1.200;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,15:35:90:90,0,161
chrV	198629	.	A	G	1071	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.31;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1104,120,0
chrV	198669	.	G	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.18;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1264,141,0
chrV	198671	.	G	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=20.16;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1283,141,0
chrV	198680	.	G	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.97;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1255,150,0
chrV	198865	.	A	G	587	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.24;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:69:620,69,0
chrV	198880	.	G	A	527	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.03;FS=0.000;HaplotypeScore=11.7906;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.57;SB=-7.201e+01	GT:AD:DP:GQ:PL	1/1:0,28:29:60:560,60,0
chrV	199099	.	C	T	2272	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.43;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2305,255,0
chrV	199206	.	G	C	1989	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=23.13;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2022,222,0
chrV	199231	.	C	T	2152	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.89;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2185,243,0
chrV	199252	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.85;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1937,219,0
chrV	199270	.	A	G	1851	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.33;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1884,213,0
chrV	199328	.	T	C	2723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.210;QD=20.63;ReadPosRankSum=1.653;SB=-1.717e+03	GT:AD:DP:GQ:PL	1/1:1,131:132:99:2756,306,0
chrV	199354	.	G	A	2948	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=13.6982;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.79;SB=-1.810e+03	GT:AD:DP:GQ:PL	1/1:0,147:149:99:2981,321,0
chrV	199919	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.24;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1945,207,0
chrV	200053	.	T	C	1666	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.51;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1699,189,0
chrV	200245	.	G	A	1631	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9932;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.46;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1664,186,0
chrV	200350	.	C	T	1945	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.43;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1978,210,0
chrV	200851	.	G	A	1807	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1840,198,0
chrV	201844	.	G	A	1901	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.69;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1934,204,0
chrV	202232	.	G	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.89;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1509,162,0
chrV	203211	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.05;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1252,141,0
chrV	203226	.	T	C	1009	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=15.77;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1042,117,0
chrV	203238	.	C	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=15.60;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1125,123,0
chrV	203277	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=16.28;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1124,126,0
chrV	203996	.	A	G	1517	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.537;QD=21.37;ReadPosRankSum=1.586;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1550,171,0
chrV	204069	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.666;QD=20.52;ReadPosRankSum=1.679;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1367,153,0
chrV	204096	.	A	G	1558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=3.716;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.390;QD=19.23;ReadPosRankSum=1.689;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1591,177,0
chrV	205086	.	T	G	2053	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.651;QD=23.60;ReadPosRankSum=1.691;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:2086,228,0
chrV	206666	.	G	T	1178	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.67;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1211,132,0
chrV	206836	.	G	C	2384	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.37;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2417,267,0
chrV	207156	.	A	G	794	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=17.26;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:827,90,0
chrV	207211	.	C	T	95.26	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=37.2379;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=1.83;SB=-2.403e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:15:128,15,0
chrV	207250	.	G	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;QD=18.25;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1986,225,0
chrV	207285	.	A	C	2622	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.6487;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=19.14;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2655,291,0
chrV	207299	.	T	A	2700	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;QD=20.93;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2733,288,0
chrV	207304	.	C	G	2388	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=18.51;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2421,267,0
chrV	207328	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.89;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1464,156,0
chrV	207446	.	C	T	276	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=12.00;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,22:23:33:309,33,0
chrV	207464	.	T	C	341	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.05;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,18:20:42:374,42,0
chrV	209424	.	A	G	1474	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=16.38;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1507,171,0
chrV	210347	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.73;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1671,183,0
chrV	210793	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1251,138,0
chrV	211559	.	G	A	1322	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.16;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1355,156,0
chrV	211770	.	C	A	804	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.48;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:96:837,96,0
chrV	211938	.	G	A	1393	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.19;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1426,156,0
chrV	212373	.	A	C	851	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.50;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:884,99,0
chrV	212393	.	G	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.3328;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.31;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1130,123,0
chrV	212430	.	T	C	1645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.110;QD=20.82;ReadPosRankSum=1.688;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1678,186,0
chrV	212443	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8549;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.51;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1808,204,0
chrV	212499	.	C	A	2387	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.23;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2420,258,0
chrV	212585	.	C	A	1930	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=1.613;QD=21.44;ReadPosRankSum=-1.453;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,87:90:99:1963,210,0
chrV	212871	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=21.46;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1557,168,0
chrV	212901	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=9.7889;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.203;QD=18.43;ReadPosRankSum=1.636;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1360,153,0
chrV	212997	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.08;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1468,165,0
chrV	213244	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.31;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1617,180,0
chrV	213423	.	G	A	773	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.85;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:87:806,87,0
chrV	213929	.	C	T	2195	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=18.45;SB=-1.405e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2228,240,0
chrV	214752	.	G	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.72;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1650,180,0
chrV	214872	.	A	G	1043	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.18;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1076,120,0
chrV	214893	.	C	T	1013	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.26;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1046,114,0
chrV	215320	.	G	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.23;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1429,159,0
chrV	215362	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=15.2497;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.77;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:82:99:1736,192,0
chrV	215441	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=9.798;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.229;QD=23.16;ReadPosRankSum=2.309;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1654,186,0
chrV	216589	.	C	G	1051	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=16.68;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1084,123,0
chrV	216733	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.24;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1435,156,0
chrV	216887	.	G	A	1600	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.39;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1633,186,0
chrV	217039	.	T	C	1173	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.58;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1206,135,0
chrV	217294	.	T	A	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=87;Dels=0.00;FS=3.547;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.007;QD=18.39;ReadPosRankSum=1.571;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1633,174,0
chrV	218068	.	T	C	2313	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.85;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2346,261,0
chrV	218235	.	A	G	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.427;QD=17.08;ReadPosRankSum=1.687;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1348,150,0
chrV	218253	.	A	C	1082	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=14.82;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1115,129,0
chrV	218347	.	A	T	1965	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.90;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1998,216,0
chrV	218489	.	C	G	1416	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.82;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1449,162,0
chrV	218648	.	A	G	1420	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.00;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1453,165,0
chrV	218690	.	A	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.26;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1362,150,0
chrV	218838	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.675;QD=20.93;ReadPosRankSum=0.808;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1289,141,0
chrV	220108	.	C	T	2367	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.01;FS=0.000;HaplotypeScore=13.0894;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.64;SB=-1.527e+03	GT:AD:DP:GQ:PL	1/1:0,123:126:99:2400,255,0
chrV	220210	.	C	T	2146	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.84;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2179,234,0
chrV	220519	.	C	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.90;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1545,171,0
chrV	221810	.	C	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=200.0672;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.39;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1662,180,0
chrV	221903	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=10.4456;MLEAC=2;MLEAF=1.00;MQ=61.09;MQ0=0;QD=20.55;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1225,138,0
chrV	221992	.	T	G	972	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.84;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:1,45:49:99:1005,114,0
chrV	222178	.	T	A	1398	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.89;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1431,153,0
chrV	222207	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.49;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1729,195,0
chrV	222253	.	G	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.72;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1531,165,0
chrV	222592	.	T	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4459;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=18.93;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1945,210,0
chrV	223004	.	G	A	1385	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.67;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1418,156,0
chrV	223180	.	A	C	900	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.37;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:933,105,0
chrV	223697	.	G	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=16.66;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1199,129,0
chrV	223802	.	G	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.50;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1509,162,0
chrV	224006	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.60;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1372,153,0
chrV	224038	.	A	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.11;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1218,138,0
chrV	224276	.	A	G	1223	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.73;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1256,141,0
chrV	225229	.	C	T	1228	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3272;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.33;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1261,144,0
chrV	225233	.	G	A	1316	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.03;FS=0.000;HaplotypeScore=4.8836;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.25;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1349,144,0
chrV	225238	.	G	T	1221	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8836;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=-0.866;QD=19.08;ReadPosRankSum=0.433;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1254,141,0
chrV	225494	.	G	A	263	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=14.61;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:33:296,33,0
chrV	225496	.	A	G	265	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=14.72;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:33:298,33,0
chrV	225499	.	T	C	254	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=14.11;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:33:287,33,0
chrV	225501	.	G	A	288	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=16.00;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:33:321,33,0
chrV	225668	.	T	G	130.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.27;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:163,18,0
chrV	225778	.	A	G	310	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=19.37;SB=-7.475e-03	GT:AD:DP:GQ:PL	1/1:0,16:16:39:343,39,0
chrV	225827	.	C	T	1558	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.86;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1591,168,0
chrV	226491	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=17.22;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1307,144,0
chrV	226500	.	G	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.48;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1309,141,0
chrV	226861	.	C	T	1872	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.91;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1905,201,0
chrV	227640	.	T	C	1929	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.68;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1962,219,0
chrV	228104	.	A	G	2372	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.6953;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=21.76;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2405,270,0
chrV	228468	.	A	G	2544	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.19;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2577,285,0
chrV	228601	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1880,201,0
chrV	229119	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.6818;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.968;QD=18.76;ReadPosRankSum=1.630;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1309,144,0
chrV	229595	.	A	G	2012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.713;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.418;QD=22.86;ReadPosRankSum=1.692;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:2045,228,0
chrV	229778	.	C	T	1241	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.77;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1274,138,0
chrV	230512	.	A	G	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=13.6056;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.154;QD=17.33;ReadPosRankSum=1.694;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:1,89:94:99:1662,189,0
chrV	231027	.	A	T	2109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=4.677;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.618;QD=22.68;ReadPosRankSum=1.618;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2142,231,0
chrV	231116	.	G	A	2148	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.61;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2181,231,0
chrV	231721	.	G	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.80;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1669,183,0
chrV	232000	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.47;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1600,180,0
chrV	232348	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.955;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.856;QD=18.26;ReadPosRankSum=1.692;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1640,180,0
chrV	232364	.	G	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.48;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1604,180,0
chrV	232392	.	G	A	1836	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.63;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1869,201,0
chrV	232580	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.1194;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.85;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1701,195,0
chrV	232794	.	G	A	1516	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.35;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1549,165,0
chrV	232845	.	T	G	1437	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.42;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1470,162,0
chrV	232869	.	A	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.10;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1601,171,0
chrV	233255	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.89;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1368,153,0
chrV	233356	.	A	G	1550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=2.938;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.345;QD=22.79;ReadPosRankSum=2.377;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1583,177,0
chrV	234239	.	G	A	1512	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1545,165,0
chrV	234299	.	T	C	1131	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.54;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1164,132,0
chrV	234408	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.98;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1232,138,0
chrV	234626	.	T	C	2561	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.696;DP=115;Dels=0.00;FS=2.350;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.912;QD=22.27;ReadPosRankSum=3.669;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:5,110:115:99:2594,291,0
chrV	234749	.	G	A	744	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:84:777,84,0
chrV	234931	.	G	A	2704	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=18.4841;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.16;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2737,291,0
chrV	235320	.	A	G	2211	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.27;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2244,252,0
chrV	235495	.	T	C	1863	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8279;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1896,210,0
chrV	235773	.	A	G	1986	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.31;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2019,228,0
chrV	235812	.	A	G	1617	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.56;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1650,180,0
chrV	236202	.	A	G	2235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.074;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.4429;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=2.260;QD=19.10;ReadPosRankSum=2.303;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:2,115:117:99:2268,252,0
chrV	236358	.	T	C	1720	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.23;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1753,195,0
chrV	236637	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6388;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.83;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1566,177,0
chrV	236672	.	G	A	1706	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.61;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1739,186,0
chrV	237393	.	G	A	997	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1030,114,0
chrV	237481	.	G	C	1786	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1819,207,0
chrV	238052	.	C	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.24;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1612,174,0
chrV	238604	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.87;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1291,147,0
chrV	238676	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.35;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1326,144,0
chrV	238719	.	C	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.71;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1466,162,0
chrV	239168	.	A	G	1866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=90;Dels=0.00;FS=2.450;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.067;QD=20.73;ReadPosRankSum=1.713;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:4,86:90:99:1899,191,0
chrV	239206	.	T	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.70;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1609,180,0
chrV	239238	.	C	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3604;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.65;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1413,150,0
chrV	239555	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.01;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1736,198,0
chrV	239594	.	A	C	1521	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.50;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1554,180,0
chrV	239695	.	G	C	1505	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.20;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1538,171,0
chrV	239782	.	C	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=19.67;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1764,186,0
chrV	239810	.	G	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.50;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1632,180,0
chrV	239875	.	A	G	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.161;QD=21.59;ReadPosRankSum=1.589;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:1,96:99:99:2170,243,0
chrV	239909	.	T	C	2145	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.6645;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.24;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2178,243,0
chrV	239995	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.45;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2006,213,0
chrV	240009	.	C	T	1709	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.35;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1742,192,0
chrV	240035	.	T	C	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=-0.480;QD=16.75;ReadPosRankSum=1.690;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1423,159,0
chrV	240086	.	C	T	1590	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=16.91;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1623,177,0
chrV	240087	.	C	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=16.50;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1584,177,0
chrV	240100	.	T	G	1659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=101;Dels=0.00;FS=6.088;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=-0.590;QD=16.43;ReadPosRankSum=2.931;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:3,98:101:99:1692,192,0
chrV	240196	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.487;QD=16.72;ReadPosRankSum=1.693;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1521,168,0
chrV	240293	.	C	T	2636	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.18;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2669,285,0
chrV	240731	.	G	A	2054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=108;Dels=0.00;FS=3.522;HaplotypeScore=7.8691;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.738;QD=19.02;ReadPosRankSum=-0.032;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2087,222,0
chrV	240764	.	G	A	1964	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.89;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1997,216,0
chrV	241047	.	A	G	1576	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=94;Dels=0.00;FS=2.581;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-1.312;QD=16.77;ReadPosRankSum=2.861;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:3,91:94:99:1609,180,0
chrV	241059	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=15.09;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1482,165,0
chrV	241084	.	G	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=14.32;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1322,144,0
chrV	241088	.	C	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=14.28;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1218,132,0
chrV	241109	.	G	A	1141	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=14.63;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1174,126,0
chrV	241256	.	A	G	1084	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.02;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1117,129,0
chrV	241325	.	G	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.34;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1207,129,0
chrV	241371	.	A	G	1370	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.03;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1403,156,0
chrV	241424	.	A	G	1418	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.42;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1451,165,0
chrV	241759	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.77;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:962,102,0
chrV	241777	.	T	C	1121	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=4.232;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-0.098;QD=21.15;ReadPosRankSum=1.667;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1154,129,0
chrV	241799	.	C	A	1130	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=18.83;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1163,126,0
chrV	241800	.	C	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=18.46;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1159,129,0
chrV	241849	.	G	A	987	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=17.62;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1020,108,0
chrV	241921	.	C	A	675	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=15.00;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,42:45:75:708,75,0
chrV	241980	.	G	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.00;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1574,168,0
chrV	242046	.	T	A	1424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=2.635;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;MQRankSum=-1.007;QD=21.91;ReadPosRankSum=2.336;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1457,159,0
chrV	242159	.	T	C	776	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=18.05;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:809,90,0
chrV	242167	.	G	A	912	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=16.89;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:945,102,0
chrV	242361	.	C	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.21;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1417,162,0
chrV	242385	.	A	T	1434	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=17.49;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1467,156,0
chrV	242413	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;QD=13.61;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1340,150,0
chrV	242456	.	A	G	835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=6.725;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.97;MQ0=0;MQRankSum=-1.951;QD=9.94;ReadPosRankSum=2.391;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:96:868,96,0
chrV	242461	.	T	A	786	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.93;MQ0=0;QD=9.82;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:87:819,87,0
chrV	242472	.	T	C	695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;MQRankSum=-1.377;QD=8.91;ReadPosRankSum=1.688;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:84:728,84,0
chrV	242481	.	G	A	763	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=10.31;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:84:796,84,0
chrV	242834	.	G	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.67;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1550,171,0
chrV	242907	.	A	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=17.01;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1394,153,0
chrV	242916	.	G	A	1149	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=16.41;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1182,126,0
chrV	242940	.	A	T	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.612;HaplotypeScore=6.0840;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.224;QD=17.06;ReadPosRankSum=1.691;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1483,156,0
chrV	243090	.	C	G	1499	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.97;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1532,174,0
chrV	243157	.	A	C	2016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.507;QD=20.36;ReadPosRankSum=1.662;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2049,231,0
chrV	243299	.	T	C	1718	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=17.71;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1751,195,0
chrV	243657	.	A	T	69.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.255;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.949;QD=1.93;ReadPosRankSum=3.889;SB=2.49	GT:AD:DP:GQ:PL	1/1:15,21:36:12:102,12,0
chrV	243805	.	C	T	418	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.17;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:51:451,51,0
chrV	243892	.	A	T	551	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:66:584,66,0
chrV	244404	.	T	A	1476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.557;QD=18.68;ReadPosRankSum=1.644;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1509,168,0
chrV	244608	.	C	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2002;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.03;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1337,141,0
chrV	244650	.	C	T	773	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.32;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:806,87,0
chrV	244851	.	G	A	1210	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1243,141,0
chrV	244920	.	T	C	1034	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.15;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1067,120,0
chrV	245855	.	G	C	1836	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.86;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1869,210,0
chrV	246124	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.27;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1729,183,0
chrV	246194	.	T	C	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.433;QD=17.46;ReadPosRankSum=1.566;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:1,103:105:99:1866,210,0
chrV	246195	.	C	T	1827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.511;QD=17.24;ReadPosRankSum=1.402;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1860,204,0
chrV	246303	.	T	C	1600	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.05;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1633,180,0
chrV	246374	.	G	A	1845	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.83;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1878,201,0
chrV	246498	.	A	C	1378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-1.683;QD=19.41;ReadPosRankSum=1.683;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1411,156,0
chrV	246542	.	C	G	1448	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.05;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1481,165,0
chrV	246588	.	T	C	1945	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=20.47;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1978,225,0
chrV	246604	.	T	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.35;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,91:95:99:1776,198,0
chrV	246716	.	C	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.61;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1473,159,0
chrV	246845	.	G	C	1703	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.12;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1736,192,0
chrV	246906	.	G	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.03;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1187,129,0
chrV	246907	.	G	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.68;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1234,132,0
chrV	247147	.	G	A	1718	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.21;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1751,195,0
chrV	247282	.	T	C	1095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=4.834;HaplotypeScore=7.2572;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-0.346;QD=15.42;ReadPosRankSum=1.633;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1128,126,0
chrV	248107	.	G	A	2010	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.96;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2043,225,0
chrV	248286	.	A	G	1553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.390;QD=18.94;ReadPosRankSum=1.647;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1586,180,0
chrV	248444	.	C	T	856	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;QD=10.31;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:889,99,0
chrV	248460	.	A	G	1039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=0;MQRankSum=-0.057;QD=11.42;ReadPosRankSum=1.618;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1072,123,0
chrV	248522	.	C	T	2152	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=39.8401;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.39;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2185,240,0
chrV	248659	.	A	G	2524	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=22.14;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2557,285,0
chrV	248691	.	T	G	2384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.102;QD=23.37;ReadPosRankSum=1.698;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2417,276,0
chrV	248756	.	A	G	1895	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=20.38;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1928,216,0
chrV	248822	.	A	G	2139	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=21.83;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2172,237,0
chrV	248843	.	A	G	2007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;MQRankSum=0.901;QD=19.30;ReadPosRankSum=1.697;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:1,99:104:99:2040,228,0
chrV	248974	.	T	C	2841	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=22.91;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2874,318,0
chrV	249080	.	G	A	2106	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=15.15;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2139,228,0
chrV	249097	.	A	G	2072	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=137;Dels=0.00;FS=9.608;HaplotypeScore=5.7570;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=0.155;QD=15.12;ReadPosRankSum=2.413;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:2,133:137:99:2105,234,0
chrV	249123	.	G	A	2141	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.79;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2174,228,0
chrV	249157	.	G	A	2050	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.71;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2083,222,0
chrV	249177	.	T	C	2092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=109;Dels=0.00;FS=6.088;HaplotypeScore=6.4350;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-1.602;QD=19.19;ReadPosRankSum=2.936;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:3,106:109:99:2125,240,0
chrV	249234	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.31;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1781,201,0
chrV	249256	.	C	T	1814	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.30;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1847,198,0
chrV	249335	.	A	G	2492	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.46;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,132:135:99:2525,282,0
chrV	249347	.	T	C	2963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-1.299;QD=19.49;ReadPosRankSum=1.641;SB=-1.633e+03	GT:AD:DP:GQ:PL	1/1:1,151:152:99:2996,342,0
chrV	249496	.	A	C	2714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;MQRankSum=0.014;QD=21.89;ReadPosRankSum=1.591;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:1,122:124:99:2747,309,0
chrV	249511	.	T	C	2729	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=22.74;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2762,315,0
chrV	249613	.	C	T	2034	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.8811;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=19.75;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2067,234,0
chrV	249703	.	C	T	3129	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;QD=24.26;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:0,126:129:99:3162,339,0
chrV	249705	.	C	A	2962	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=3.656;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.77;MQ0=0;MQRankSum=1.591;QD=24.08;ReadPosRankSum=-1.648;SB=-1.425e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2995,327,0
chrV	249798	.	G	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=15.56;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1309,138,0
chrV	249807	.	C	G	1059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=80;Dels=0.00;FS=4.717;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.01;MQ0=0;MQRankSum=0.996;QD=13.24;ReadPosRankSum=0.130;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1092,120,0
chrV	249825	.	T	C	894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DP=71;Dels=0.00;FS=4.710;HaplotypeScore=2.9677;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=0;MQRankSum=0.366;QD=12.59;ReadPosRankSum=1.683;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:927,102,0
chrV	249834	.	T	A	920	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.94;MQ0=0;QD=14.37;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:953,102,0
chrV	249845	.	T	G	917	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=13.69;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:950,108,0
chrV	249884	.	G	A	529	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.02;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:60:562,60,0
chrV	249887	.	T	C	511	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.36;SB=-1.550e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:60:544,60,0
chrV	249901	.	G	A	443	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.66;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:51:476,51,0
chrV	249912	.	T	A	464	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.121;QD=13.65;ReadPosRankSum=1.223;SB=-1.290e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:54:497,54,0
chrV	249917	.	A	T	456	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.193;QD=12.67;ReadPosRankSum=1.636;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:51:489,51,0
chrV	250508	.	A	T	1631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=5.213;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=44.71;MQ0=0;MQRankSum=0.019;QD=17.54;ReadPosRankSum=1.695;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1664,180,0
chrV	250547	.	C	A	1492	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=13.5859;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=15.87;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1525,168,0
chrV	250573	.	G	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=20.50;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1673,177,0
chrV	250605	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.17;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1539,171,0
chrV	250692	.	T	C	2024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=95;Dels=0.00;FS=8.505;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.517;QD=21.31;ReadPosRankSum=2.346;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:2057,231,0
chrV	251006	.	C	G	1613	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.04;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1646,183,0
chrV	251036	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.95;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1529,162,0
chrV	251267	.	C	T	2420	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.42;SB=-1.324e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2453,264,0
chrV	251279	.	A	G	2034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-1.626;QD=20.76;ReadPosRankSum=1.626;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2067,231,0
chrV	251309	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.70;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1713,183,0
chrV	251322	.	C	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.93;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1368,150,0
chrV	251490	.	A	G	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;MQRankSum=-0.838;QD=19.38;ReadPosRankSum=1.695;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1835,204,0
chrV	251700	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=73;Dels=0.00;FS=5.891;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-1.186;QD=18.84;ReadPosRankSum=2.901;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:3,68:73:99:1408,156,0
chrV	251702	.	A	G	1466	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=20.36;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1499,168,0
chrV	251721	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.49;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1666,180,0
chrV	251775	.	C	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.42;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1361,150,0
chrV	251925	.	T	A	1022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.650;QD=21.29;ReadPosRankSum=1.660;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1055,117,0
chrV	251970	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.299;QD=18.58;ReadPosRankSum=1.678;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1222,138,0
chrV	252072	.	G	A	837	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=16.74;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:870,93,0
chrV	252078	.	C	T	738	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=15.70;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:771,84,0
chrV	252103	.	C	A	744	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.6282;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=13.53;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:87:777,87,0
chrV	253377	.	G	A	1888	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.95;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1921,207,0
chrV	253643	.	G	A	1956	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.59;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1989,213,0
chrV	253929	.	T	C	1803	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.72;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1836,210,0
chrV	254021	.	T	G	1623	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.32;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1656,189,0
chrV	254085	.	T	C	1977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=8.029;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.013;QD=20.81;ReadPosRankSum=2.398;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:2010,222,0
chrV	254274	.	T	A	2604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=134;Dels=0.00;FS=2.780;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.490;QD=19.43;ReadPosRankSum=2.339;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:2,132:134:99:2637,297,0
chrV	254391	.	G	A	1897	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.13;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1930,204,0
chrV	254589	.	G	A	4180.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.44;SB=-1.947e+03	GT:AD:DP:GQ:PL	1/1:0,171:171:99:4180,444,0
chrV	254651	.	G	T	2656	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.82;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2689,285,0
chrV	254694	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8912;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.28;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1771,189,0
chrV	254773	.	C	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=16.07;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1206,129,0
chrV	254798	.	G	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=18.33;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1408,156,0
chrV	254838	.	C	T	1264	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=16.21;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1297,144,0
chrV	254945	.	G	A	2191	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.13;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2224,237,0
chrV	255120	.	A	C	939	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.41;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:972,108,0
chrV	255344	.	G	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.9450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1865,201,0
chrV	255503	.	A	G	910	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5594;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.96;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:943,105,0
chrV	255702	.	T	C	1563	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.12;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1596,180,0
chrV	256032	.	A	G	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=3.9758;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-0.483;QD=16.87;ReadPosRankSum=1.562;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1062,120,0
chrV	256038	.	T	C	872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.163;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;MQRankSum=-1.195;QD=15.03;ReadPosRankSum=1.673;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:905,102,0
chrV	256048	.	G	C	641	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.6827;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=12.09;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:75:674,75,0
chrV	256159	.	T	C	477	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=3.632;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.155;QD=15.90;ReadPosRankSum=1.502;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:57:510,57,0
chrV	256810	.	A	G	1946	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1979,228,0
chrV	257968	.	A	G	1123	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1156,129,0
chrV	258350	.	T	C	1966	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.57;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1999,219,0
chrV	258489	.	C	T	950	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=15.32;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:983,105,0
chrV	258495	.	A	G	820	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=14.39;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,54:57:96:853,96,0
chrV	258552	.	A	G	1042	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=15.55;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1075,120,0
chrV	258644	.	G	A	2185	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=21.85;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2218,249,0
chrV	258666	.	G	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.94;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1980,216,0
chrV	259303	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.96;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1362,153,0
chrV	259415	.	C	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.52;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1505,168,0
chrV	259466	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.61;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1887,210,0
chrV	259547	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.509;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.565;QD=20.68;ReadPosRankSum=1.649;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1770,198,0
chrV	259762	.	T	A	2328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;DP=107;Dels=0.01;FS=6.127;HaplotypeScore=8.5705;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;MQRankSum=-1.638;QD=21.76;ReadPosRankSum=2.896;SB=-1.372e+03	GT:AD:DP:GQ:PL	1/1:3,103:106:99:2361,249,0
chrV	259785	.	G	A	2208	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.03;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:0,113:116:99:2241,249,0
chrV	259803	.	T	A	2038	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.38;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2071,222,0
chrV	260004	.	G	A	703	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=8.90;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:78:736,78,0
chrV	260054	.	A	G	1094	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=13.85;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1127,126,0
chrV	260078	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;MQRankSum=0.214;QD=18.58;ReadPosRankSum=-0.736;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1389,156,0
chrV	260094	.	C	T	1574	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=19.43;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1607,174,0
chrV	260120	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.9131;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=19.48;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1708,186,0
chrV	260327	.	A	G	1420	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=19.19;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1453,162,0
chrV	260511	.	C	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.7858;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.67;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1695,183,0
chrV	260603	.	C	A	2204	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=20.60;SB=-1.448e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2237,240,0
chrV	260616	.	C	A	2330	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.75;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2363,252,0
chrV	260734	.	T	C	1739	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=22.58;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1772,195,0
chrV	260905	.	C	T	3198	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=26.00;SB=-1.648e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3231,345,0
chrV	261193	.	A	T	2134	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.25;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2167,228,0
chrV	261299	.	C	T	811	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.26;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:844,93,0
chrV	261462	.	T	A	400	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.1375;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=16.00;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:48:433,48,0
chrV	261787	.	G	A	747	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=16.24;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:780,84,0
chrV	261790	.	A	G	658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.203;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;MQRankSum=0.301;QD=14.30;ReadPosRankSum=1.657;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:78:691,78,0
chrV	261965	.	C	T	2990	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.51;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3023,336,0
chrV	262023	.	A	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.91;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1327,150,0
chrV	262033	.	T	A	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-0.828;QD=18.96;ReadPosRankSum=1.682;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1360,150,0
chrV	262042	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=18.61;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1447,156,0
chrV	262212	.	A	G	2855	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.69;SB=-1.604e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2888,315,0
chrV	262462	.	A	T	1897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.4305;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-0.683;QD=16.79;ReadPosRankSum=1.541;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,112:113:99:1930,216,0
chrV	262797	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2265,252,0
chrV	262877	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.059;QD=19.75;ReadPosRankSum=1.684;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1455,162,0
chrV	263549	.	T	C	858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.577;QD=19.07;ReadPosRankSum=1.655;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:891,99,0
chrV	263709	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:945,102,0
chrV	264464	.	C	T	899	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=16.35;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:932,99,0
chrV	264478	.	G	A	872	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=14.53;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:905,99,0
chrV	264480	.	G	C	811	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=13.30;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:93:844,93,0
chrV	264668	.	G	A	812	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.82;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:90:845,90,0
chrV	264738	.	G	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.61;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1406,150,0
chrV	264762	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.83;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1620,177,0
chrV	265533	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.59;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1247,144,0
chrV	265623	.	C	T	1277	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.95;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1310,141,0
chrV	265681	.	G	T	1890	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.00;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1923,204,0
chrV	265809	.	C	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.03;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1175,126,0
chrV	265870	.	T	G	1103	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.63;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1136,126,0
chrV	265876	.	G	A	1106	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.69;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1139,123,0
chrV	265937	.	T	C	643	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:75:676,75,0
chrV	265995	.	T	C	684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=3.575;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=1.310;QD=16.68;ReadPosRankSum=1.648;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:81:717,81,0
chrV	266082	.	A	C	1083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.374;QD=21.24;ReadPosRankSum=1.664;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1116,123,0
chrV	266122	.	A	G	1935	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.50;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1968,219,0
chrV	266192	.	C	A	1993	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.14;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2026,234,0
chrV	266266	.	C	T	355	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.75;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,19:20:42:388,42,0
chrV	266383	.	C	T	4080.01	PASS	AC=2;AF=1.00;AN=2;DP=187;Dels=0.01;FS=0.000;HaplotypeScore=17.7258;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.82;SB=-1.923e+03	GT:AD:DP:GQ:PL	1/1:0,186:186:99:4080,433,0
chrV	266480	.	C	T	2306	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.02;FS=0.000;HaplotypeScore=18.3844;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.23;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2339,261,0
chrV	266551	.	G	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.11;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1772,195,0
chrV	266610	.	T	C	1983	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=21.10;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:2016,234,0
chrV	266722	.	C	A	2534	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.7087;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=17.12;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,148:148:99:2567,276,0
chrV	266732	.	T	C	2348	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=142;Dels=0.01;FS=6.115;HaplotypeScore=7.5407;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.810;QD=16.54;ReadPosRankSum=1.707;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,138:141:99:2381,261,0
chrV	266971	.	A	G	1322	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=17.17;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1355,150,0
chrV	266977	.	A	G	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.533;QD=16.41;ReadPosRankSum=1.688;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1313,147,0
chrV	267061	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.88;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1345,150,0
chrV	267318	.	T	C	1550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.595;QD=20.13;ReadPosRankSum=1.641;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1583,183,0
chrV	267673	.	G	A	2390	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.13;SB=-1.421e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2423,258,0
chrV	268231	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.64;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1621,183,0
chrV	268713	.	C	T	2449	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.58;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2482,261,0
chrV	269034	.	A	C	1227	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.53;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1260,141,0
chrV	269057	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=18.81;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1237,138,0
chrV	269239	.	T	C	698	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:731,81,0
chrV	269894	.	T	C	2243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=99;Dels=0.00;FS=3.033;HaplotypeScore=5.8526;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=1.587;QD=22.66;ReadPosRankSum=2.348;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:2,95:99:99:2276,252,0
chrV	269910	.	G	T	2135	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=22.71;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2168,234,0
chrV	269950	.	T	C	1157	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.61;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1190,132,0
chrV	270049	.	A	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=18.32;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1114,120,0
chrV	270213	.	A	T	2632	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.3612;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.23;SB=-1.557e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2665,288,0
chrV	270233	.	T	C	2160	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.97;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2193,243,0
chrV	270283	.	G	T	2128	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.88;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2161,234,0
chrV	270466	.	C	A	1417	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=17.28;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1450,156,0
chrV	270473	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=15.98;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1519,171,0
chrV	271135	.	T	A	1193	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=14.91;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1226,132,0
chrV	271156	.	G	A	1273	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.6406;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.44;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1306,138,0
chrV	271177	.	C	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5830;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=15.98;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1072,114,0
chrV	271202	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=16.16;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1035,114,0
chrV	271319	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=5.952;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=1.347;QD=19.11;ReadPosRankSum=1.677;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1237,138,0
chrV	271332	.	A	G	1014	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;MQRankSum=-1.788;QD=18.11;ReadPosRankSum=2.362;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1047,117,0
chrV	271333	.	T	A	1044	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=19.33;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1077,117,0
chrV	271334	.	T	C	992	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=18.37;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1025,117,0
chrV	271367	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=17.65;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1127,120,0
chrV	271374	.	G	A	962	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=18.50;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:995,108,0
chrV	271409	.	G	A	848	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.43;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:881,93,0
chrV	271934	.	T	C	2481	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2514,279,0
chrV	272025	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.10;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1580,174,0
chrV	272169	.	T	C	3817.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.958;DP=168;Dels=0.00;FS=6.032;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.114;QD=22.72;ReadPosRankSum=2.922;SB=-2.071e+03	GT:AD:DP:GQ:PL	1/1:3,165:168:99:3817,423,0
chrV	272259	.	T	C	2075	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.58;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2108,237,0
chrV	272453	.	C	G	1992	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.75;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2025,222,0
chrV	272478	.	A	G	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-1.032;QD=19.96;ReadPosRankSum=1.654;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1829,207,0
chrV	272511	.	C	T	1577	SnpCluster	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.8466;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=15.46;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1610,171,0
chrV	272517	.	T	C	1570	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=112;Dels=0.00;FS=2.507;HaplotypeScore=3.5343;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=-0.755;QD=14.02;ReadPosRankSum=2.791;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:3,109:112:99:1603,177,0
chrV	272521	.	G	A	1691	SnpCluster	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.7097;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=13.98;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,119:121:99:1724,183,0
chrV	273721	.	T	A	2445	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.07;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2478,270,0
chrV	274390	.	C	T	1043	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.98;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1076,120,0
chrV	276619	.	G	T	998	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1031,117,0
chrV	276799	.	A	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.63;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1436,165,0
chrV	277459	.	C	A,T	131.18	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=45.0739;MLEAC=1,1;MLEAF=0.500,0.500;MQ=54.57;MQ0=0;QD=2.22;SB=-3.362e+02	GT:AD:DP:GQ:PL	1/2:0,54,5:59:29:189,47,29,142,0,136
chrV	279535	.	T	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2400,264,0
chrV	279683	.	T	C	1541	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.57;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1574,174,0
chrV	279685	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-0.496;QD=18.86;ReadPosRankSum=2.390;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:2,80:83:99:1598,180,0
chrV	280805	.	A	G	2287	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.89;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2320,261,0
chrV	280826	.	G	A	2880	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.00;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:2913,324,0
chrV	280959	.	C	T	598	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=16.61;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:631,75,0
chrV	281297	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.62;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1113,123,0
chrV	281310	.	A	G	952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=53;Dels=0.00;FS=8.003;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-1.642;QD=17.96;ReadPosRankSum=2.260;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:2,50:53:99:985,111,0
chrV	281429	.	A	G	1010	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1043,117,0
chrV	281587	.	A	G	689	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.13;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:722,81,0
chrV	282990	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=20.24;ReadPosRankSum=1.522;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1389,153,0
chrV	283424	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.082;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.477;QD=18.87;ReadPosRankSum=0.049;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1486,148,0
chrV	283533	.	T	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.12;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1542,171,0
chrV	283765	.	G	C	1257	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.05;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1290,141,0
chrV	284190	.	A	T	473	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.19;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:54:506,54,0
chrV	286762	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.64;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1346,144,0
chrV	287047	.	A	T	1946	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.66;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1979,213,0
chrV	288745	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.73;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1706,195,0
chrV	288848	.	C	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.11;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2067,222,0
chrV	289034	.	G	A	1244	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.06;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1277,138,0
chrV	289889	.	G	A	963	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=2;QD=18.52;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:996,108,0
chrV	290108	.	C	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=1;QD=19.05;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1252,138,0
chrV	290926	.	A	G	4630.01	PASS	AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.26;SB=-1.962e+03	GT:AD:DP:GQ:PL	1/1:0,207:208:99:4630,513,0
chrV	291988	.	A	G	1412	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=6.6999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1445,159,0
chrV	292512	.	A	G	1177	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.21;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1210,138,0
chrV	292543	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.03;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1729,186,0
chrV	292596	.	C	A	2603	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.63;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2636,279,0
chrV	292707	.	A	G	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.882;HaplotypeScore=4.7278;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.052;QD=21.13;ReadPosRankSum=1.680;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1449,162,0
chrV	292763	.	T	C	1085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.221;QD=17.79;ReadPosRankSum=1.675;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1118,126,0
chrV	292842	.	G	A	932	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.26;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:965,108,0
chrV	293301	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.62;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1765,189,0
chrV	293965	.	A	C	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=4.567;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.856;QD=21.71;ReadPosRankSum=1.690;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1835,207,0
chrV	293991	.	G	C	1600	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.62;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1633,183,0
chrV	294112	.	A	G	823	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.15;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:856,96,0
chrV	294460	.	G	A	2042	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=5.389;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.523;QD=24.31;ReadPosRankSum=1.106;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:2075,219,0
chrV	294714	.	T	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.89;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1266,144,0
chrV	295010	.	G	C	2146	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.83;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2179,243,0
chrV	296063	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.529;QD=19.50;ReadPosRankSum=1.684;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1437,162,0
chrV	296561	.	A	G	815	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:848,96,0
chrV	296659	.	A	C	850	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.2726;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.32;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:883,99,0
chrV	296717	.	A	G	1055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.114;QD=18.51;ReadPosRankSum=1.609;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1088,123,0
chrV	297515	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.74;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1272,132,0
chrV	297527	.	G	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.18;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1163,129,0
chrV	297816	.	G	A	441	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=18.37;SB=-1.780e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:54:474,54,0
chrV	297869	.	T	C	466	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.26;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:54:499,54,0
chrV	298006	.	T	C	543	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=15.08;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:576,66,0
chrV	298190	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.48;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1205,135,0
chrV	298538	.	T	C	1787	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.53;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1820,201,0
chrV	298743	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.29;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1549,174,0
chrV	298831	.	A	G	1823	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.82;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1856,207,0
chrV	298854	.	C	A	1821	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.77;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1854,198,0
chrV	298873	.	T	A	1780	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.98;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1813,195,0
chrV	299183	.	G	T	1329	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=17.26;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1362,147,0
chrV	299186	.	C	T	1296	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=16.62;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1329,150,0
chrV	299219	.	C	T	1202	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=15.02;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1235,138,0
chrV	299237	.	G	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=17.22;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1755,189,0
chrV	299438	.	G	C	1448	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.74;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1481,168,0
chrV	299795	.	T	C	1337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.528;QD=19.66;ReadPosRankSum=1.630;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1370,153,0
chrV	299873	.	A	C	1223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;DP=70;Dels=0.00;FS=3.016;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.335;QD=17.47;ReadPosRankSum=2.380;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1256,141,0
chrV	300738	.	G	A	1911	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.5583;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.12;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1944,219,0
chrV	300974	.	C	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.48;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1622,174,0
chrV	301091	.	G	A	1770	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.8881;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.44;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1803,201,0
chrV	301307	.	C	T	1119	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.72;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1152,123,0
chrV	301830	.	G	C	2587	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.41;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2620,288,0
chrV	301867	.	C	A	2318	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.90;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2351,249,0
chrV	301899	.	C	T	2711	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.40;SB=-1.542e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2744,291,0
chrV	301990	.	T	C	3027	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.9782;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.59;SB=-1.587e+03	GT:AD:DP:GQ:PL	1/1:0,146:147:99:3060,342,0
chrV	302509	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.750;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.647;QD=18.82;ReadPosRankSum=1.565;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1595,183,0
chrV	302655	.	T	C	2671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=124;Dels=0.00;FS=7.871;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.470;QD=21.54;ReadPosRankSum=2.370;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:2,122:124:99:2704,297,0
chrV	302761	.	C	T	3230.05	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=13.8035;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.84;SB=-1.777e+03	GT:AD:DP:GQ:PL	1/1:0,154:155:99:3263,351,0
chrV	303277	.	T	A	2567	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.32;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2600,279,0
chrV	303371	.	G	A	1227	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.28;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1260,135,0
chrV	303374	.	A	G	1189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.662;QD=17.49;ReadPosRankSum=1.681;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1222,135,0
chrV	303475	.	A	G	367	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=11.84;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:45:400,45,0
chrV	303485	.	T	C	397	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=12.41;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:48:430,48,0
chrV	303487	.	A	G	398	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=12.44;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:48:431,48,0
chrV	303494	.	A	T	366	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=35.89;MQ0=0;QD=9.89;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:45:399,45,0
chrV	303521	.	T	C	494	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=33.6934;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=10.98;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:60:527,60,0
chrV	303560	.	C	T	864	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=16.30;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:897,96,0
chrV	304224	.	T	C	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.049;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.995;QD=21.44;ReadPosRankSum=1.658;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2048,225,0
chrV	304272	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.782;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.927;QD=20.56;ReadPosRankSum=1.692;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1801,204,0
chrV	304530	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=17.97;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1345,150,0
chrV	304936	.	C	T	747	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=16.98;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:84:780,84,0
chrV	304950	.	C	T	965	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.87;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:998,114,0
chrV	304998	.	C	T	956	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=17.38;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:989,105,0
chrV	306008	.	C	T	1677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-1.304;QD=18.84;ReadPosRankSum=0.720;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1710,189,0
chrV	306017	.	C	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.5371;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=17.50;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1853,204,0
chrV	306386	.	G	A	2162	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.99;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2195,240,0
chrV	307468	.	T	C	1372	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.66;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1405,156,0
chrV	308135	.	G	A	3865.01	PASS	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.09;SB=-1.461e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:3865,409,0
chrV	308152	.	C	T	3530.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.92;SB=-1.646e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3530,372,0
chrV	308363	.	G	A	1315	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=17.77;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1348,144,0
chrV	308551	.	A	G	1797	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.97;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1830,207,0
chrV	308710	.	C	T	2725	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=42.87;MQ0=0;QD=23.90;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2758,297,0
chrV	308835	.	T	C	2518	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.98;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2551,288,0
chrV	308891	.	A	G	2723	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.96;SB=-1.371e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2756,303,0
chrV	309004	.	G	A	1074	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=30.4380;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=11.07;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1107,120,0
chrV	309040	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.532;DP=173;Dels=0.00;FS=4.822;HaplotypeScore=13.6805;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;MQRankSum=-0.050;QD=9.08;ReadPosRankSum=1.512;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:1,172:173:99:1604,183,0
chrV	309130	.	C	G	4029.01	PASS	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.51;SB=-1.460e+03	GT:AD:DP:GQ:PL	1/1:0,178:179:99:4029,459,0
chrV	309146	.	T	C	3727.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.810;QD=22.05;ReadPosRankSum=1.630;SB=-1.533e+03	GT:AD:DP:GQ:PL	1/1:1,168:169:99:3727,423,0
chrV	309170	.	A	G	2532	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.42;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2565,288,0
chrV	312465	.	A	G	1906	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.69;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1939,216,0
chrV	312677	.	G	A	2136	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.22;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2169,234,0
chrV	312810	.	C	T	2644	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.79;SB=-1.429e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2677,285,0
chrV	312918	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=104.3829;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.21;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1266,141,0
chrV	313206	.	C	A	2805	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=13.8112;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.62;SB=-1.825e+03	GT:AD:DP:GQ:PL	1/1:0,141:143:99:2838,303,0
chrV	313343	.	A	G	1073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=3.438;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.866;QD=16.51;ReadPosRankSum=1.678;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1106,123,0
chrV	313344	.	G	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=16.85;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1128,126,0
chrV	313487	.	T	A	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.634;QD=17.89;ReadPosRankSum=-0.718;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1500,162,0
chrV	313588	.	A	G	2187	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.25;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2220,249,0
chrV	313619	.	T	C	1934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.01;FS=3.245;HaplotypeScore=5.2954;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.076;QD=20.15;ReadPosRankSum=1.696;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1967,219,0
chrV	313660	.	C	T	1379	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.89;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1412,153,0
chrV	313793	.	A	T	1925	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.600;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=15.3880;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.133;QD=18.16;ReadPosRankSum=-1.033;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:1958,207,0
chrV	313810	.	A	G	2019	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=19.05;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2052,228,0
chrV	313858	.	A	C	2303	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.35;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2336,261,0
chrV	313914	.	T	C	2608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-1.075;QD=22.10;ReadPosRankSum=1.672;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,115:118:99:2641,291,0
chrV	313933	.	A	G	2165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=1.344;QD=20.23;ReadPosRankSum=0.502;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2198,246,0
chrV	313937	.	A	G	2026	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.11;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2059,231,0
chrV	313976	.	T	C	1750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.371;QD=18.23;ReadPosRankSum=1.696;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1783,198,0
chrV	314032	.	A	C	1818	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=20.66;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1851,204,0
chrV	314046	.	A	G	128.03	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.075;DP=98;Dels=0.00;FS=12.464;HaplotypeScore=71.1660;MLEAC=1;MLEAF=0.500;MQ=49.17;MQ0=0;MQRankSum=1.499;QD=1.31;ReadPosRankSum=-5.540;SB=-3.377e-02	GT:AD:DP:GQ:PL	0/1:81,16:98:19:158,0,19
chrV	314099	.	A	T	2463	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=114.8030;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=18.11;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:99:2496,264,0
chrV	314127	.	T	C	2945	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.01;FS=0.000;HaplotypeScore=13.9432;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.63;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,148:149:99:2978,333,0
chrV	314160	.	C	T	2867	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.03;FS=0.000;HaplotypeScore=47.5633;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.77;SB=-1.436e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:2900,321,0
chrV	314287	.	C	T	2181	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.77;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2214,243,0
chrV	314589	.	C	T	2237	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.15;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2270,246,0
chrV	314777	.	G	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.61;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1484,159,0
chrV	315315	.	T	C	2524	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.84;SB=-1.692e+03	GT:AD:DP:GQ:PL	1/1:0,132:134:99:2557,288,0
chrV	315416	.	C	T	2437	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.15;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2470,264,0
chrV	315776	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.63;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1039,117,0
chrV	315976	.	T	A	1162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=64;Dels=0.00;FS=8.136;HaplotypeScore=6.3406;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-1.509;QD=18.16;ReadPosRankSum=2.372;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1195,129,0
chrV	316166	.	G	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.63;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1158,123,0
chrV	316228	.	T	C	983	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.079;QD=18.55;ReadPosRankSum=1.667;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1016,117,0
chrV	316681	.	G	C	1587	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8591;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.74;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1620,183,0
chrV	316912	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.12;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1410,156,0
chrV	317040	.	A	G	1656	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.96;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1689,189,0
chrV	321624	.	G	T	3610.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.3539;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.91;SB=-2.020e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3610,387,0
chrV	322554	.	G	C	1633	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,74:78:99:1666,189,0
chrV	325466	.	C	G	2030	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.07;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2063,234,0
chrV	327363	.	A	C	873	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:906,99,0
chrV	327970	.	G	A	856	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=16.15;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:889,96,0
chrV	328271	.	G	A	1509	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=20.96;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1542,162,0
chrV	331977	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.63;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1601,171,0
chrV	332072	.	G	C	1856	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.1218;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.36;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1889,210,0
chrV	332139	.	G	A	2199	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.87;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2232,234,0
chrV	332272	.	C	T	1432	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.03;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1465,159,0
chrV	332460	.	C	T	1998	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.0309;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.20;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2031,219,0
chrV	332482	.	G	A	1840	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=23.00;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1873,201,0
chrV	332507	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.39;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1421,153,0
chrV	332539	.	C	G	1148	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.13;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1181,135,0
chrV	333114	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.23;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1729,195,0
chrV	333160	.	A	T	994	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.75;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1027,114,0
chrV	333164	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.399;QD=20.67;ReadPosRankSum=0.666;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1108,126,0
chrV	333251	.	G	A	933	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=17.94;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:966,105,0
chrV	333273	.	G	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.70;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1080,117,0
chrV	333575	.	C	T	1032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.808;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.039;QD=17.20;ReadPosRankSum=0.346;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1065,102,0
chrV	333619	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=17.55;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1332,144,0
chrV	333669	.	C	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.92;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1323,147,0
chrV	333688	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6453;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.439;QD=17.79;ReadPosRankSum=1.686;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1367,156,0
chrV	333779	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.94;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1207,138,0
chrV	334031	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.44;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1239,138,0
chrV	334132	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.70;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1357,147,0
chrV	334139	.	G	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.17;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1287,141,0
chrV	334216	.	C	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.54;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1909,207,0
chrV	334274	.	T	G	1871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.440;QD=19.69;ReadPosRankSum=1.623;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1904,216,0
chrV	334331	.	T	C	1540	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.55;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1573,177,0
chrV	334416	.	G	T	2465	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.7417;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.70;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2498,270,0
chrV	334487	.	G	A	1615	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.1083;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.23;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1648,180,0
chrV	334623	.	G	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=16.89;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1621,177,0
chrV	334750	.	C	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.38;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1603,174,0
chrV	334787	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.5100;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.941;QD=16.07;ReadPosRankSum=1.694;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1511,174,0
chrV	335604	.	T	C	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.000;QD=19.89;ReadPosRankSum=1.604;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1127,123,0
chrV	335632	.	G	A	875	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.87;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:908,99,0
chrV	335812	.	T	C	1022	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.25;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1055,117,0
chrV	337672	.	T	C	937	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.02;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:970,108,0
chrV	341482	.	G	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.98;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1172,126,0
chrV	341527	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=17.83;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1192,135,0
chrV	342203	.	G	C	2741	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.25;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2774,306,0
chrV	342844	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=4.122;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.503;QD=19.81;ReadPosRankSum=1.676;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,61:64:99:1301,147,0
chrV	343502	.	C	A	1927	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.6287;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.41;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1960,210,0
chrV	343588	.	T	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.74;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1120,126,0
chrV	346707	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.24;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1457,159,0
chrV	349236	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.38;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1219,132,0
chrV	349582	.	T	C	1513	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=2.846;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.181;QD=20.17;ReadPosRankSum=2.351;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1546,171,0
chrV	349661	.	C	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.07;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1466,156,0
chrV	349710	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.26;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1350,147,0
chrV	350741	.	C	T	1655	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.07;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1688,180,0
chrV	352394	.	A	G	1283	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.44;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1316,147,0
chrV	352574	.	T	A	1546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=69;Dels=0.00;FS=6.190;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.898;QD=22.41;ReadPosRankSum=2.898;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1579,168,0
chrV	353583	.	C	A	2291	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.09;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,117:120:99:2324,252,0
chrV	353654	.	G	A	4057.01	PASS	AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=15.5599;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.59;SB=-2.082e+03	GT:AD:DP:GQ:PL	1/1:0,171:172:99:4057,427,0
chrV	353854	.	C	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3063;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.95;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1789,201,0
chrV	354761	.	G	A	2961	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=21.30;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2994,321,0
chrV	354793	.	T	G	3077	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.7708;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=21.67;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3110,348,0
chrV	355019	.	T	C	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;MQRankSum=-0.089;QD=16.12;ReadPosRankSum=1.688;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1290,144,0
chrV	355336	.	C	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.89;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1412,159,0
chrV	355397	.	A	G	1563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=7.7133;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=1.219;QD=19.30;ReadPosRankSum=1.689;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1596,183,0
chrV	356079	.	G	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.57;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1586,168,0
chrV	356220	.	A	G	2191	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.13;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2224,243,0
chrV	356363	.	C	T	820	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.50;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:853,93,0
chrV	356837	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=5.185;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.052;QD=22.38;ReadPosRankSum=1.680;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1510,168,0
chrV	357876	.	C	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.52;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1798,192,0
chrV	359292	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=15.06;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1343,150,0
chrV	360247	.	A	G	1135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.5523;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.323;QD=19.24;ReadPosRankSum=1.674;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1168,129,0
chrV	360409	.	C	A	2597	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.4516;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-1.374e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2630,279,0
chrV	360939	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=54;Dels=0.00;FS=2.831;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.443;QD=18.94;ReadPosRankSum=2.357;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:2,51:54:99:1056,117,0
chrV	360974	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.04;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1023,114,0
chrV	361243	.	T	C	2040	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.67;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2073,231,0
chrV	362559	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.27;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1522,168,0
chrV	362609	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.55;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1597,180,0
chrV	362832	.	C	T	1286	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.19;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1319,144,0
chrV	363002	.	C	T	2518	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=22.48;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2551,273,0
chrV	363833	.	T	C	2591	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=21.24;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2624,303,0
chrV	364042	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=19.05;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1824,195,0
chrV	364059	.	T	A	1783	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=19.38;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1816,192,0
chrV	364061	.	C	G	1668	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=18.13;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1701,192,0
chrV	364082	.	C	T	1822	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=17.52;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1855,210,0
chrV	364150	.	C	T	1619	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.59;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1652,174,0
chrV	365083	.	G	A	1169	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.98;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1202,135,0
chrV	366285	.	G	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.76;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1230,132,0
chrV	367786	.	G	A	2156	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.96;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2189,237,0
chrV	368184	.	C	T	2213	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.59;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2246,240,0
chrV	368706	.	A	G	1718	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.608;QD=19.98;ReadPosRankSum=1.608;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:1,83:86:99:1751,192,0
chrV	368771	.	C	T	1490	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.59;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1523,168,0
chrV	368857	.	T	G	1688	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.120;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.909;QD=20.59;ReadPosRankSum=1.602;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:1,79:82:99:1721,192,0
chrV	369120	.	C	T	1296	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9391;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.94;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1329,141,0
chrV	369257	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.903;QD=21.23;ReadPosRankSum=1.683;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1540,171,0
chrV	369931	.	C	T	2056	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.36;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2089,222,0
chrV	370893	.	A	T	1427	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.84;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1460,159,0
chrV	370904	.	A	G	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=86;Dels=0.00;FS=8.468;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-0.220;QD=16.38;ReadPosRankSum=2.391;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:2,82:86:99:1442,165,0
chrV	371216	.	G	A	1901	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.89;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1934,207,0
chrV	371849	.	C	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.4095;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=15.93;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1451,153,0
chrV	371859	.	C	T	1256	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.7412;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=15.32;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1289,138,0
chrV	371903	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.8707;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=13.17;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1087,126,0
chrV	371929	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=17.34;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1299,147,0
chrV	372057	.	T	C	1294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=73;Dels=0.00;FS=25.763;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.375;QD=17.73;ReadPosRankSum=2.793;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1327,150,0
chrV	372248	.	T	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.54;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1304,138,0
chrV	372263	.	A	G	1045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=4.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=1.144;QD=19.72;ReadPosRankSum=1.667;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1078,120,0
chrV	372487	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.191;QD=22.95;ReadPosRankSum=1.624;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1502,168,0
chrV	372581	.	G	A	2155	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.68;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2188,240,0
chrV	372742	.	A	T	1597	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.49;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1630,177,0
chrV	373736	.	A	G	2406	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.25;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2439,270,0
chrV	374720	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1389,153,0
chrV	375017	.	C	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.35;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1687,186,0
chrV	376468	.	A	C	971	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.46;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1004,114,0
chrV	377190	.	T	C	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.805;QD=21.89;ReadPosRankSum=1.586;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1587,180,0
chrV	377684	.	A	G	1392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=72;Dels=0.00;FS=8.301;HaplotypeScore=5.6589;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.491;QD=19.33;ReadPosRankSum=2.381;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1425,162,0
chrV	378140	.	A	T	1861	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1894,204,0
chrV	378586	.	C	T	1978	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2011,219,0
chrV	379332	.	C	A	2630	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.5036;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.27;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2663,288,0
chrV	382369	.	C	T	632	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=18.06;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:72:665,72,0
chrV	383543	.	T	G	1503	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1536,174,0
chrV	384156	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1937,216,0
chrV	386503	.	G	A	2268	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2301,243,0
chrV	386623	.	G	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1570,165,0
chrV	387695	.	T	A	1371	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.77;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1404,150,0
chrV	389531	.	A	G	1840	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=13.4560;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.22;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1873,210,0
chrV	389576	.	C	T	1177	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.83;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1210,141,0
chrV	389822	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.79;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2111,231,0
chrV	389845	.	C	T	2110	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.72;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2143,228,0
chrV	390437	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.33;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1176,126,0
chrV	390625	.	C	T	1851	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.78;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1884,207,0
chrV	392305	.	C	T	999	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.85;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1032,114,0
chrV	393496	.	T	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.90;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1829,198,0
chrV	393768	.	C	T	2093	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.00;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2126,225,0
chrV	393855	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.25;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1542,171,0
chrV	393938	.	A	G	1783	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.86;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1816,201,0
chrV	394021	.	C	T	739	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.53;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:772,81,0
chrV	394092	.	A	G	927	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.18;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:960,111,0
chrV	394357	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.70;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1455,168,0
chrV	394911	.	G	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.36;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1662,183,0
chrV	395447	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.56;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1883,204,0
chrV	397744	.	G	T	2979	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.13;SB=-1.773e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3012,321,0
chrV	398975	.	T	G	1259	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1991;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.34;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1292,144,0
chrV	400005	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.471;QD=20.20;ReadPosRankSum=1.602;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1124,126,0
chrV	400033	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=17.74;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1133,123,0
chrV	400481	.	T	C	1712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.1093;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.157;QD=19.02;ReadPosRankSum=1.693;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:1,87:90:99:1745,192,0
chrV	400856	.	C	T	1386	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=16.90;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1419,150,0
chrV	400882	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.698;QD=19.54;ReadPosRankSum=1.681;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1362,150,0
chrV	401106	.	G	T	1958	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.25;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1991,216,0
chrV	401545	.	A	G	1946	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.02;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1979,222,0
chrV	403557	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.77;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1197,135,0
chrV	404317	.	T	C	1488	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1521,171,0
chrV	404924	.	T	G	1568	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.48;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,69:73:99:1601,180,0
chrV	407957	.	G	T	2233	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.89;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2266,243,0
chrV	408026	.	G	A	1688	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.46;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1721,183,0
chrV	408422	.	T	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.10;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1425,159,0
chrV	409170	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1712,192,0
chrV	409510	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.05;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1444,156,0
chrV	410293	.	C	T	893	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.77;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:926,99,0
chrV	410311	.	C	G	848	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.67;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:881,99,0
chrV	410317	.	G	A	899	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=17.29;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:932,99,0
chrV	410460	.	T	C	2163	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.85;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2196,246,0
chrV	410473	.	G	A	2061	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.25;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2094,234,0
chrV	410808	.	G	A	1244	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.52;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1277,141,0
chrV	410863	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-0.171;QD=19.07;ReadPosRankSum=1.683;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1387,156,0
chrV	410947	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.5315;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.62;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1889,201,0
chrV	412969	.	T	G	521	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=15.32;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,31:34:63:554,63,0
chrV	413281	.	T	A	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.9612;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.443;QD=21.22;ReadPosRankSum=2.359;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1179,135,0
chrV	415310	.	T	C	2791	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.94;SB=-1.441e+03	GT:AD:DP:GQ:PL	1/1:1,138:140:99:2824,321,0
chrV	415816	.	G	A	1591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.828;QD=23.06;ReadPosRankSum=0.126;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1624,161,0
chrV	416792	.	C	T	921	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.42;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:954,102,0
chrV	416841	.	C	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.5047;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.40;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1413,150,0
chrV	416905	.	T	G	2485	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.59;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2518,285,0
chrV	417297	.	A	G	2487	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.3670;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.61;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2520,285,0
chrV	417511	.	G	A	2209	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.31;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2242,237,0
chrV	418504	.	A	G	1220	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.00;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1253,141,0
chrV	418792	.	G	A	856	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.78;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:96:889,96,0
chrV	419085	.	C	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.06;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1718,189,0
chrV	419378	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.42;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1427,159,0
chrV	419568	.	G	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.52;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1209,129,0
chrV	419631	.	T	G	846	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.681;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7967;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.547;QD=15.11;ReadPosRankSum=1.609;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:879,99,0
chrV	420292	.	C	T	1307	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.75;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1340,150,0
chrV	420596	.	C	A	2459	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.87;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2492,267,0
chrV	420990	.	G	A	803	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.62;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:99:836,99,0
chrV	421040	.	C	T	808	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.25;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:90:841,90,0
chrV	421100	.	C	T	565	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.83;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:66:598,66,0
chrV	421229	.	C	T	841	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.03;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:93:874,93,0
chrV	422021	.	C	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.25;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1137,126,0
chrV	422183	.	C	T	1815	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.97;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1848,195,0
chrV	422613	.	G	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1233,138,0
chrV	423401	.	G	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5008;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.71;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1835,198,0
chrV	423827	.	A	G	2653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.455;QD=20.73;ReadPosRankSum=2.411;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:2,125:128:99:2686,306,0
chrV	424544	.	A	T	889	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.39;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:922,99,0
chrV	424671	.	T	C	1591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.342;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.4235;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.602;QD=19.64;ReadPosRankSum=-0.390;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1624,186,0
chrV	425002	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.23;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1398,150,0
chrV	425066	.	A	G	2603	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.5066;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.28;SB=-1.512e+03	GT:AD:DP:GQ:PL	1/1:0,131:135:99:2636,300,0
chrV	425334	.	A	G	1993	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.73;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2026,228,0
chrV	425833	.	G	C	1046	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.35;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1079,120,0
chrV	425936	.	C	T	2145	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.37;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2178,231,0
chrV	426243	.	A	G	1397	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.25;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1430,162,0
chrV	426331	.	C	A	1626	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.39;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1659,180,0
chrV	426433	.	A	G	1485	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.04;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1518,171,0
chrV	426481	.	C	T	1154	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.90;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1187,129,0
chrV	426512	.	G	T	1223	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.08;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1256,135,0
chrV	426940	.	G	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.67;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1707,186,0
chrV	426961	.	T	C	1849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-1.523;QD=22.28;ReadPosRankSum=1.690;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1882,210,0
chrV	427627	.	T	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=17.21;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1668,180,0
chrV	427920	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.28;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1190,135,0
chrV	428227	.	G	A	926	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=16.25;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:959,111,0
chrV	428251	.	T	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.40;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1197,135,0
chrV	428507	.	G	A	1664	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1697,183,0
chrV	428593	.	T	C	2417	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.6109;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.77;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2450,273,0
chrV	428611	.	C	T	2134	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.76;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2167,237,0
chrV	428644	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.19;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1749,198,0
chrV	428691	.	T	C	1776	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.48;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1809,198,0
chrV	428860	.	T	C	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.812;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-1.265;QD=20.35;ReadPosRankSum=1.693;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1844,201,0
chrV	428948	.	A	G	1980	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.84;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2013,228,0
chrV	429094	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.27;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1330,150,0
chrV	429408	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.33;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1192,126,0
chrV	429460	.	A	C	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.619;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-1.830;QD=15.39;ReadPosRankSum=2.040;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:3,74:79:99:1264,120,0
chrV	429466	.	C	T	1432	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1563;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=17.25;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1465,156,0
chrV	429589	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.197;QD=15.07;ReadPosRankSum=1.688;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1239,135,0
chrV	429823	.	A	T	3333.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.50;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:3333,366,0
chrV	430009	.	G	A	1214	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.68;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1247,132,0
chrV	430033	.	G	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.90;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1429,156,0
chrV	430454	.	A	T	1506	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=1.133;QD=18.59;ReadPosRankSum=1.689;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1539,171,0
chrV	430574	.	A	G	29.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;DP=84;Dels=0.00;FS=1.121;HaplotypeScore=70.3898;MLEAC=1;MLEAF=0.500;MQ=56.35;MQ0=0;MQRankSum=-0.558;QD=0.35;ReadPosRankSum=1.998;SB=-3.701e+01	GT:AD:DP:GQ:PL	0/1:70,14:84:59:59,0,62
chrV	430597	.	A	G	792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.115;QD=10.56;ReadPosRankSum=1.685;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:1,72:75:93:825,93,0
chrV	430620	.	T	G	901	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=12.51;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:934,105,0
chrV	430652	.	G	A	1486	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.12;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1519,165,0
chrV	430822	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.35;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1501,168,0
chrV	430837	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=17.57;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1263,141,0
chrV	430899	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.35;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1134,123,0
chrV	430927	.	T	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.55;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1476,159,0
chrV	430967	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.47;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1589,180,0
chrV	431050	.	C	A	1978	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.98;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2011,225,0
chrV	431114	.	G	A	2582	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.69;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2615,276,0
chrV	431224	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=21.09;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1594,174,0
chrV	431454	.	G	T	2287	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=20.98;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,104:109:99:2320,255,0
chrV	431836	.	C	T	206.01	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=2.64;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:27:239,27,0
chrV	433124	.	G	A	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=5.643;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.630;QD=19.93;ReadPosRankSum=1.102;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1368,128,0
chrV	434623	.	T	C	426	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=20.29;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:51:459,51,0
chrV	434634	.	T	G	407	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=18.50;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:48:440,48,0
chrV	434637	.	A	G	390	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=18.57;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:48:423,48,0
chrV	435863	.	A	T	1593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.4641;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.352;QD=19.19;ReadPosRankSum=1.648;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1626,174,0
chrV	436038	.	C	G	1901	filter	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=6;QD=18.28;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:6,98:104:99:1934,219,0
chrV	438230	.	T	A	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=2.754;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.616;QD=20.33;ReadPosRankSum=2.231;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1863,204,0
chrV	438514	.	G	C	1553	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.43;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1586,177,0
chrV	438684	.	C	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.08;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1235,132,0
chrV	438836	.	A	C	1445	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.53;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1478,165,0
chrV	438862	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.88;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1564,168,0
chrV	438887	.	A	G	1517	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.732;QD=21.99;ReadPosRankSum=1.582;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1550,171,0
chrV	439039	.	C	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=22.48;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1674,177,0
chrV	439255	.	A	G	1954	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.71;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1987,228,0
chrV	439285	.	C	T	1959	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.1426;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.06;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1992,216,0
chrV	441308	.	C	T	2798	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.33;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2831,309,0
chrV	442211	.	A	G	1212	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1245,141,0
chrV	442543	.	A	G	2367	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.33;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2400,264,0
chrV	442769	.	G	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.49;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1795,195,0
chrV	443291	.	A	G	1109	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=19.80;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1142,126,0
chrV	449629	.	C	T	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=6.94;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:6:59,6,0
chrV	449630	.	A	T	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=3.96;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,5:5:6:51,6,0
chrV	450386	.	C	T	933	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.6529;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=22.21;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:966,105,0
chrV	451015	.	G	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.86;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1454,162,0
chrV	451138	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.47;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1363,153,0
chrV	452264	.	A	T	2035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.443;HaplotypeScore=7.4031;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.039;QD=21.20;ReadPosRankSum=1.550;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2068,222,0
chrV	452383	.	G	A	3009	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.4534;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.75;SB=-1.715e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3042,327,0
chrV	452746	.	G	A	1936	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.04;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1969,225,0
chrV	453365	.	G	C	2087	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.66;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,98:101:99:2120,237,0
chrV	453440	.	G	C	1825	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.81;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1858,210,0
chrV	453581	.	C	A	1505	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.05;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1538,171,0
chrV	453740	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=9.7963;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.52;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1243,132,0
chrV	453798	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.37;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1176,126,0
chrV	453920	.	T	C	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.028;QD=20.61;ReadPosRankSum=1.675;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1290,147,0
chrV	454019	.	C	T	911	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.19;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:944,99,0
chrV	454499	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1078,114,0
chrV	454565	.	G	A	1690	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1723,183,0
chrV	454667	.	T	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.04;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1366,153,0
chrV	454697	.	A	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.45;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1406,156,0
chrV	454844	.	C	T	721	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=14.71;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:78:754,78,0
chrV	454979	.	A	G	780	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.25;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:813,93,0
chrV	455275	.	G	A	1005	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1038,111,0
chrV	455308	.	C	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.33;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1712,183,0
chrV	455575	.	A	G	2587	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=23.10;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2620,291,0
chrV	455676	.	T	C	2006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.396;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.4469;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=0.118;QD=19.48;ReadPosRankSum=0.488;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2039,206,0
chrV	455886	.	T	C	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=82;Dels=0.00;FS=4.411;HaplotypeScore=14.7486;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.970;QD=19.30;ReadPosRankSum=2.088;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:3,76:82:99:1616,183,0
chrV	456048	.	C	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.00;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1947,213,0
chrV	456087	.	A	G	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.358;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-1.155;QD=17.92;ReadPosRankSum=1.555;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1431,159,0
chrV	456116	.	A	T	1333	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.51;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1366,150,0
chrV	456278	.	C	A	3968.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.0265;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.34;SB=-2.201e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:3968,421,0
chrV	456456	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.10;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1742,195,0
chrV	456505	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.94;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2139,228,0
chrV	456639	.	T	C	1663	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.28;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1696,189,0
chrV	457225	.	T	C	1813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.496;QD=20.60;ReadPosRankSum=1.693;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1846,207,0
chrV	457376	.	C	G	2537	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.65;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2570,288,0
chrV	457412	.	C	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.86;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1764,192,0
chrV	457524	.	T	A	1059	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1092,117,0
chrV	457596	.	T	C	1430	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.65;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1463,162,0
chrV	458086	.	G	A	3302.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.31;SB=-1.771e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3302,354,0
chrV	458125	.	T	A	3539.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.5349;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.85;SB=-1.594e+03	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3539,393,0
chrV	458181	.	C	G	2281	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.17;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2314,258,0
chrV	458184	.	T	C	2241	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.49;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,110:115:99:2274,258,0
chrV	458598	.	C	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.36;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1571,168,0
chrV	458865	.	G	A	2529	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.99;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2562,276,0
chrV	458964	.	A	G	1454	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1487,168,0
chrV	459185	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.31;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1820,204,0
chrV	459358	.	G	A	799	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=14.53;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:832,90,0
chrV	459578	.	A	G	1816	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.70;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1849,210,0
chrV	459697	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.40;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1273,138,0
chrV	459740	.	C	T	691	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.27;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:81:724,81,0
chrV	459742	.	T	C	732	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.78;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:765,84,0
chrV	459897	.	C	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.20;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1588,174,0
chrV	459912	.	C	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0219;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.33;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2005,213,0
chrV	460008	.	T	C	1370	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.45;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1403,156,0
chrV	460182	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.43;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1257,141,0
chrV	460225	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.45;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1297,144,0
chrV	460379	.	G	A	1599	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.52;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1632,177,0
chrV	460411	.	G	A	2040	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=21.70;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2073,222,0
chrV	460465	.	A	G	1261	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=69.8761;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=17.51;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1294,144,0
chrV	460508	.	C	A	1126	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.8066;MLEAC=2;MLEAF=1.00;MQ=43.22;MQ0=0;QD=15.64;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1159,123,0
chrV	460509	.	C	A	1038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.659;QD=14.62;ReadPosRankSum=1.683;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1071,114,0
chrV	460536	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=0.360;QD=16.32;ReadPosRankSum=0.817;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:898,99,0
chrV	460655	.	G	A	725	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.76;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:81:758,81,0
chrV	460661	.	G	A	642	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=13.10;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:75:675,75,0
chrV	460685	.	T	C	661	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=11.80;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:78:694,78,0
chrV	460694	.	C	G	645	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=11.94;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:75:678,75,0
chrV	460867	.	A	G	2183	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.19;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2216,246,0
chrV	460898	.	A	G	2123	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=21.89;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2156,243,0
chrV	460994	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.59;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1199,135,0
chrV	461069	.	G	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=18.29;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1167,132,0
chrV	461447	.	T	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.74;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1532,171,0
chrV	462462	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.29;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:93:843,93,0
chrV	462614	.	A	G	1001	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.20;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1034,117,0
chrV	462968	.	T	C	143.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.457;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=1.372;QD=3.41;ReadPosRankSum=1.206;SB=-1.240e+02	GT:AD:DP:GQ:PL	1/1:10,32:42:21:176,21,0
chrV	463004	.	C	T	516	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.11;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:60:549,60,0
chrV	463157	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.14;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1162,123,0
chrV	463220	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.56;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1202,129,0
chrV	463877	.	G	C	1544	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.55;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1577,177,0
chrV	463895	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.2928;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.71;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1923,207,0
chrV	464078	.	G	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.48;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1446,153,0
chrV	464103	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.60;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1186,129,0
chrV	464192	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=3.016;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=2.062;QD=18.77;ReadPosRankSum=2.344;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1347,147,0
chrV	464291	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.592;QD=20.85;ReadPosRankSum=1.688;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1680,186,0
chrV	464305	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.73;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1795,198,0
chrV	464363	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=16.27;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1351,144,0
chrV	464494	.	G	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.84;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1883,201,0
chrV	464675	.	C	T	1947	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.38;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1980,213,0
chrV	465077	.	T	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.84;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1671,183,0
chrV	467553	.	T	C	2016	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.57;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2049,228,0
chrV	468178	.	A	G	651	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=15.14;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:78:684,78,0
chrV	468183	.	C	G	602	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=15.84;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:69:635,69,0
chrV	468194	.	T	C	589	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=15.92;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:69:622,69,0
chrV	468269	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.0178;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.61;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1480,162,0
chrV	468307	.	G	T	2053	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.53;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2086,228,0
chrV	468390	.	C	T	3626.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=10.0762;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.72;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3626,390,0
chrV	468645	.	T	C	2756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=145;Dels=0.00;FS=3.289;HaplotypeScore=5.2190;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.398;QD=19.01;ReadPosRankSum=1.637;SB=-1.692e+03	GT:AD:DP:GQ:PL	1/1:1,144:145:99:2789,318,0
chrV	469975	.	C	T	2062	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.41;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2095,222,0
chrV	470268	.	C	T	1008	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.16;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1041,114,0
chrV	470535	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.60;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1640,183,0
chrV	470993	.	A	G	1593	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.44;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1626,183,0
chrV	471239	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.69;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1336,141,0
chrV	471259	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.37;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1137,126,0
chrV	471345	.	A	G	1118	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-1.353;QD=17.20;ReadPosRankSum=1.678;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1151,129,0
chrV	471632	.	C	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4981;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.81;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,69:73:99:1552,168,0
chrV	471723	.	T	C	1786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.516;QD=22.05;ReadPosRankSum=1.689;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1819,204,0
chrV	471759	.	G	A	1841	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.88;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1874,204,0
chrV	471807	.	C	T	2224	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.38;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2257,246,0
chrV	471885	.	A	T	2781	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.1111;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.57;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2814,303,0
chrV	472051	.	C	T	1745	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.06;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1778,189,0
chrV	472193	.	A	G	2515	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.12;SB=-1.532e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2548,282,0
chrV	472245	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=15.57;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1559,174,0
chrV	472377	.	C	T	900	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=15.79;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:933,99,0
chrV	472453	.	G	A	769	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=13.03;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:87:802,87,0
chrV	472464	.	G	T	846	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=13.22;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:879,99,0
chrV	472500	.	A	G	1698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=1.599;QD=15.87;ReadPosRankSum=2.358;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:2,105:107:99:1731,192,0
chrV	472577	.	C	T	2356	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=15.6811;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.63;SB=-1.469e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2389,258,0
chrV	472664	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.23;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1802,192,0
chrV	472738	.	T	C	1515	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=23.31;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1548,171,0
chrV	472753	.	A	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=20.20;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1265,138,0
chrV	472756	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=17.45;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1115,126,0
chrV	473281	.	T	C	1875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.056;QD=20.16;ReadPosRankSum=1.695;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1908,216,0
chrV	473482	.	A	G	1338	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.30;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1371,156,0
chrV	473821	.	G	A	984	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.68;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1017,111,0
chrV	473890	.	G	C	710	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=13.15;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:743,87,0
chrV	473893	.	C	G	649	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=12.25;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:78:682,78,0
chrV	473950	.	C	T	1112	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=16.60;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1145,123,0
chrV	474020	.	A	G	1293	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=16.16;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1326,150,0
chrV	474031	.	C	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.92;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1387,150,0
chrV	474077	.	T	C	976	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=-0.264;QD=16.00;ReadPosRankSum=1.674;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1009,114,0
chrV	474245	.	A	G	716	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=17.90;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:749,84,0
chrV	474267	.	A	G	608	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.2834;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=14.48;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:72:641,72,0
chrV	474268	.	T	C	624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.553;DP=49;Dels=0.00;FS=11.590;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-1.022;QD=12.73;ReadPosRankSum=3.675;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:6,43:49:72:657,72,0
chrV	474470	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.37;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1743,189,0
chrV	474506	.	C	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.27;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1517,165,0
chrV	474569	.	G	A	827	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.2517;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=16.22;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:860,93,0
chrV	474623	.	A	G	930	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=49;Dels=0.00;FS=6.673;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.126;QD=18.98;ReadPosRankSum=2.350;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:99:963,108,0
chrV	474722	.	A	G	882	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7929;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=15.47;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:915,102,0
chrV	474824	.	G	C	1242	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=15.15;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1275,144,0
chrV	474860	.	G	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=17.03;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1378,147,0
chrV	475014	.	C	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.18;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1107,120,0
chrV	475088	.	A	C	1229	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.82;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1262,141,0
chrV	475151	.	G	C	969	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=12.92;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1002,111,0
chrV	475154	.	G	A	1033	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=14.15;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1066,114,0
chrV	475308	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.67;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1553,174,0
chrV	475433	.	C	T	1111	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.7710;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=14.06;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1144,129,0
chrV	475496	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=73;Dels=0.00;FS=2.987;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.600;QD=18.44;ReadPosRankSum=2.381;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:2,70:73:99:1379,156,0
chrV	475529	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.0956;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.91;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1448,156,0
chrV	475583	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.36;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1504,171,0
chrV	475620	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.5299;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.39;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:85:99:1596,174,0
chrV	475649	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.51;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1711,183,0
chrV	476003	.	A	G	1184	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.77;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1217,135,0
chrV	476027	.	T	C	916	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.96;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:949,108,0
chrV	476048	.	A	G	984	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.26;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1017,114,0
chrV	476145	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3248;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.85;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1372,153,0
chrV	476183	.	A	G	1628	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0920;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.96;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1661,186,0
chrV	476227	.	G	A	2080	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.7943;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.01;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2113,231,0
chrV	476296	.	A	T	2145	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.34;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2178,234,0
chrV	476465	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=86;Dels=0.00;FS=6.389;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.290;QD=22.52;ReadPosRankSum=2.392;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:2,83:86:99:1970,222,0
chrV	476681	.	T	C	2388	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.100;QD=22.74;ReadPosRankSum=1.699;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:1,103:105:99:2421,264,0
chrV	476809	.	G	A	1695	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.66;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1728,183,0
chrV	476888	.	C	T	2399	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.31;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2432,270,0
chrV	476891	.	T	C	2612	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=140;Dels=0.00;FS=4.929;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-0.371;QD=18.66;ReadPosRankSum=1.707;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:1,139:140:99:2645,291,0
chrV	477110	.	G	A	1810	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.66;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1843,195,0
chrV	477476	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=22.49;ReadPosRankSum=-0.845;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,82:85:99:1945,210,0
chrV	478595	.	A	G	1020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=2.995;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.985;QD=18.89;ReadPosRankSum=2.359;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1053,120,0
chrV	478598	.	G	T	997	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.46;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1030,117,0
chrV	478997	.	T	G	1595	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.55;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1628,183,0
chrV	479237	.	T	C	1770	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.58;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1803,201,0
chrV	479528	.	A	G	2030	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.15;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2063,231,0
chrV	479546	.	A	G	2101	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.40;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2134,237,0
chrV	479721	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.912;QD=19.50;ReadPosRankSum=1.595;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1515,171,0
chrV	479743	.	G	A	1570	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.15;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1603,171,0
chrV	480036	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1589,180,0
chrV	480109	.	T	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.74;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1176,132,0
chrV	480365	.	A	G	1349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.317;QD=19.00;ReadPosRankSum=1.683;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1382,156,0
chrV	480402	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=17.85;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1140,126,0
chrV	480485	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.64;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1634,183,0
chrV	480557	.	C	G	1687	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,74:78:99:1720,195,0
chrV	481268	.	C	A	2159	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.26;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2192,240,0
chrV	481448	.	T	C	3011	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.3760;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.66;SB=-1.649e+03	GT:AD:DP:GQ:PL	1/1:0,138:139:99:3044,336,0
chrV	481570	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.00;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1551,174,0
chrV	481740	.	T	C	1689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=95;Dels=0.00;FS=13.503;HaplotypeScore=9.7626;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=1.269;QD=17.78;ReadPosRankSum=2.796;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:3,91:95:99:1722,192,0
chrV	482384	.	G	C	1000	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.52;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1033,117,0
chrV	482408	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.92;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1126,123,0
chrV	482474	.	C	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.44;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1770,189,0
chrV	483535	.	A	T	1197	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.075;QD=20.29;ReadPosRankSum=1.673;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1230,132,0
chrV	483728	.	C	T	1042	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.84;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1075,114,0
chrV	483820	.	A	G	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=61;Dels=0.00;FS=7.027;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.638;QD=20.20;ReadPosRankSum=2.368;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:2,58:61:99:1265,141,0
chrV	484002	.	T	C	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.209;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.736;QD=14.24;ReadPosRankSum=1.590;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1087,123,0
chrV	484306	.	T	A	1110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.550;QD=18.81;ReadPosRankSum=1.672;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1143,126,0
chrV	484412	.	G	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.64;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1353,153,0
chrV	484537	.	C	T	1576	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.84;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1609,174,0
chrV	484566	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.39;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1600,177,0
chrV	484629	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.57;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1432,165,0
chrV	484754	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.77;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1331,141,0
chrV	484787	.	G	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.25;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1368,144,0
chrV	484851	.	T	G	876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.135;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.334;QD=15.37;ReadPosRankSum=1.672;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:909,102,0
chrV	484910	.	A	G	837	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=16.41;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:870,96,0
chrV	484935	.	A	G	822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.659;QD=17.49;ReadPosRankSum=2.293;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:96:855,96,0
chrV	485312	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.278;QD=21.05;ReadPosRankSum=1.675;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1317,147,0
chrV	485333	.	A	G	1127	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.18;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1160,132,0
chrV	485396	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.19;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1769,189,0
chrV	485599	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.73;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1197,135,0
chrV	485918	.	T	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.11;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1426,162,0
chrV	486330	.	A	T	2372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=4.260;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.300;QD=22.81;ReadPosRankSum=1.632;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2405,258,0
chrV	486614	.	T	C	2537	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.97;SB=-1.338e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2570,288,0
chrV	486863	.	C	T	2166	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=17.61;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2199,243,0
chrV	486875	.	C	T	2740	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.39;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,147:149:99:2773,309,0
chrV	486920	.	G	A	3110	PASS	AC=2;AF=1.00;AN=2;DP=172;Dels=0.01;FS=0.000;HaplotypeScore=4.6950;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.08;SB=-1.874e+03	GT:AD:DP:GQ:PL	1/1:0,167:170:99:3143,339,0
chrV	486923	.	T	C	3009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=173;Dels=0.00;FS=2.847;HaplotypeScore=8.8232;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.593;QD=17.39;ReadPosRankSum=2.421;SB=-1.733e+03	GT:AD:DP:GQ:PL	1/1:2,170:173:99:3042,339,0
chrV	487025	.	A	G	2836	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.25;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2869,324,0
chrV	487184	.	A	G	2815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=1.234;QD=19.96;ReadPosRankSum=1.707;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:1,138:141:99:2848,318,0
chrV	487436	.	T	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=16.63;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1330,150,0
chrV	487444	.	C	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.22;MQ0=0;QD=17.56;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1438,153,0
chrV	487469	.	A	T	1117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;MQRankSum=-0.764;QD=11.52;ReadPosRankSum=1.099;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:4,92:97:99:1150,138,0
chrV	487472	.	C	T	913	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.001;DP=93;Dels=0.00;FS=5.073;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;MQRankSum=-2.017;QD=9.82;ReadPosRankSum=2.755;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:4,89:93:99:946,125,0
chrV	487689	.	A	C	1903	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.9299;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=20.91;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1936,213,0
chrV	487792	.	G	C	2211	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=96.9591;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=19.57;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2244,246,0
chrV	488195	.	G	C	156.06	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.05;MQ0=0;QD=2.36;SB=-2.361e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:21:189,21,0
chrV	488211	.	T	G	289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;MQRankSum=-1.562;QD=4.74;ReadPosRankSum=1.675;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:36:322,36,0
chrV	488214	.	A	G	334	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=0;QD=5.66;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:42:367,42,0
chrV	488328	.	T	C	3171	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=20.86;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3204,357,0
chrV	488527	.	T	G	921	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=16.16;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:954,105,0
chrV	488534	.	A	G	902	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=17.35;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:935,105,0
chrV	488644	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0933;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.13;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1516,162,0
chrV	488650	.	T	C	1498	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=21.71;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1531,165,0
chrV	488835	.	G	A	1828	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.75;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1861,198,0
chrV	488899	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=26.15;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1576,165,0
chrV	489026	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.866;DP=77;Dels=0.00;FS=6.803;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.925;QD=19.86;ReadPosRankSum=2.320;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1562,177,0
chrV	489879	.	C	T	972	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;QD=15.43;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1005,114,0
chrV	489888	.	G	A	882	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.58;MQ0=0;QD=15.21;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:915,105,0
chrV	489897	.	T	C	858	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;QD=15.32;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:891,102,0
chrV	489903	.	T	C	830	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=14.07;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:863,99,0
chrV	490102	.	G	A	939	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.56;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:972,111,0
chrV	490207	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=45.84;MQ0=0;QD=14.51;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1121,129,0
chrV	490291	.	G	A	2115	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=17.20;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2148,234,0
chrV	490294	.	A	G	2059	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=16.47;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2092,231,0
chrV	490306	.	A	G	2112	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.17;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2145,240,0
chrV	490456	.	A	G	1566	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.45;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1599,180,0
chrV	490516	.	A	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.90;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1287,144,0
chrV	490694	.	T	C	2424	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.24;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2457,273,0
chrV	490809	.	T	C	1517	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.99;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1550,177,0
chrV	490952	.	C	T	1313	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=18.2209;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1346,141,0
chrV	491135	.	G	A	2294	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.93;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2327,258,0
chrV	491222	.	G	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.97;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1522,168,0
chrV	491262	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.77;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1553,174,0
chrV	491424	.	G	A	2749	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=7.3981;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=18.83;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,145:146:99:2782,294,0
chrV	491522	.	C	T	2915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=120;Dels=0.00;FS=6.990;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.606;QD=24.29;ReadPosRankSum=1.039;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2948,324,0
chrV	491556	.	T	C	1973	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2006,219,0
chrV	491617	.	T	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=15.6373;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=14.73;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1108,123,0
chrV	491806	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=82;Dels=0.00;FS=15.693;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.763;QD=18.70;ReadPosRankSum=2.913;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:3,78:82:99:1566,177,0
chrV	491911	.	A	G	818	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=14.61;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:851,96,0
chrV	492163	.	A	G	854	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.8898;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;QD=16.75;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:887,99,0
chrV	492293	.	A	G	958	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=23.37;SB=-7.101e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:99:991,114,0
chrV	498517	.	G	A	121.13	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=3.46;SB=-1.671e+02	GT:AD:DP:GQ:PL	1/1:0,31:35:18:154,18,0
chrV	498534	.	G	T	902	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=13.46;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:935,99,0
chrV	498584	.	C	T	2332	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=20.46;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2365,252,0
chrV	498872	.	C	T	2641	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.1620;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.13;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,122:125:99:2674,285,0
chrV	498929	.	G	A	2173	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.7933;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.58;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2206,240,0
chrV	498959	.	T	C	1427	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.84;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1460,162,0
chrV	499004	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1564,171,0
chrV	499353	.	T	G	2400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.732;QD=22.02;ReadPosRankSum=1.669;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2433,270,0
chrV	499401	.	A	T	2063	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.43;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2096,225,0
chrV	499569	.	T	C	1710	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.79;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1743,189,0
chrV	499617	.	A	G	1405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.6316;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.516;QD=14.64;ReadPosRankSum=1.624;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1438,162,0
chrV	499716	.	C	T	2091	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.34;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2124,234,0
chrV	499817	.	A	G	1617	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.1476;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.21;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1650,183,0
chrV	499876	.	T	C	1446	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.21;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1479,165,0
chrV	500175	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=16.46;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1251,141,0
chrV	500353	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.23;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1368,153,0
chrV	500506	.	A	G	1598	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=3.617;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;MQRankSum=-0.979;QD=17.37;ReadPosRankSum=1.657;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1631,183,0
chrV	500507	.	A	G	1566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=7.424;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-1.069;QD=17.21;ReadPosRankSum=2.396;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1599,174,0
chrV	500567	.	G	T	2238	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.46;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2271,246,0
chrV	500606	.	T	A	2179	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;DP=113;Dels=0.00;FS=2.566;HaplotypeScore=6.5236;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.775;QD=19.28;ReadPosRankSum=2.937;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:3,109:113:99:2212,246,0
chrV	500611	.	A	T	2131	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7427;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.55;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2164,243,0
chrV	500729	.	A	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=18.70;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1361,150,0
chrV	500738	.	T	A	1314	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=19.32;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1347,144,0
chrV	500783	.	G	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=17.54;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1226,132,0
chrV	500798	.	T	C	1156	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=16.28;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1189,135,0
chrV	500804	.	G	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=15.64;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1206,135,0
chrV	500850	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=15.44;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1423,159,0
chrV	500985	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.533;QD=20.38;ReadPosRankSum=1.688;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1623,180,0
chrV	501023	.	G	A	1367	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.25;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1400,153,0
chrV	501041	.	G	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=16.56;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1374,153,0
chrV	501070	.	A	C	1073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=3.198;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.659;QD=14.90;ReadPosRankSum=1.683;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1106,126,0
chrV	501092	.	G	A	1020	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=16.19;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1053,114,0
chrV	501296	.	G	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.11;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1859,198,0
chrV	501338	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.76;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1581,171,0
chrV	501534	.	T	C	1364	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.879;QD=20.98;ReadPosRankSum=1.679;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1397,159,0
chrV	501554	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.64;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1581,180,0
chrV	501719	.	A	T	2406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=120;Dels=0.00;FS=4.071;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.039;QD=20.05;ReadPosRankSum=1.703;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2439,270,0
chrV	501989	.	T	G	1427	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=17.40;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1460,162,0
chrV	502022	.	A	G	1411	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=15.01;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1444,165,0
chrV	502034	.	T	C	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=93;Dels=0.00;FS=12.595;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-1.098;QD=15.44;ReadPosRankSum=2.925;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:3,90:93:99:1469,165,0
chrV	502037	.	A	G	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=0.075;QD=15.15;ReadPosRankSum=1.582;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:1442,162,0
chrV	502070	.	A	G	1384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.337;DP=90;Dels=0.00;FS=5.324;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;MQRankSum=-1.574;QD=15.38;ReadPosRankSum=3.159;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:4,85:90:99:1417,159,0
chrV	502151	.	T	C	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=101;Dels=0.00;FS=11.317;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.791;QD=18.82;ReadPosRankSum=2.400;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:3,97:101:99:1934,213,0
chrV	502169	.	T	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.88;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1660,186,0
chrV	502185	.	G	A	1488	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.71;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1521,162,0
chrV	502220	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-1.039;QD=14.87;ReadPosRankSum=1.691;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1297,144,0
chrV	502911	.	T	C	1217	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=4.409;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.728;QD=17.39;ReadPosRankSum=1.682;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1250,141,0
chrV	502995	.	T	A	2271	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.65;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2304,246,0
chrV	503099	.	T	C	2373	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.681;QD=19.29;ReadPosRankSum=2.389;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:2,119:123:99:2406,273,0
chrV	503231	.	G	C	821	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=16.42;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:854,96,0
chrV	503711	.	G	A	929	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.87;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:962,108,0
chrV	503840	.	T	C	1053	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=5.593;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;MQRankSum=1.374;QD=18.16;ReadPosRankSum=1.673;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1086,123,0
chrV	503864	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.87;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1146,129,0
chrV	503918	.	C	T	652	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=14.17;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:75:685,75,0
chrV	504179	.	G	A	972	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=21.13;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1005,108,0
chrV	504185	.	G	A	888	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=18.89;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:921,99,0
chrV	504211	.	A	C	645	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=14.33;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:678,75,0
chrV	504218	.	A	G	670	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=13.96;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:78:703,78,0
chrV	504280	.	G	C	790	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=16.46;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:93:823,93,0
chrV	504289	.	A	G	850	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=18.48;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:883,99,0
chrV	504324	.	T	C	746	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=14.35;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:90:779,90,0
chrV	504333	.	G	A	1111	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.21;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1144,123,0
chrV	504387	.	A	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.08;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1604,174,0
chrV	504531	.	A	G	2392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=6.888;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;MQRankSum=0.123;QD=18.54;ReadPosRankSum=1.650;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,126:129:99:2425,276,0
chrV	504533	.	A	C	2407	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1324;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.66;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2440,270,0
chrV	504588	.	G	A	1813	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=17.43;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1846,198,0
chrV	504616	.	G	A	2043	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.85;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2076,219,0
chrV	504710	.	T	C	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3549;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.542;QD=16.30;ReadPosRankSum=1.637;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:2,72:76:99:1272,141,0
chrV	504711	.	A	T	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=3.010;HaplotypeScore=4.7776;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.890;QD=17.72;ReadPosRankSum=1.639;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1344,144,0
chrV	504934	.	C	T	3007	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.65;SB=-1.592e+03	GT:AD:DP:GQ:PL	1/1:0,152:153:99:3040,336,0
chrV	505198	.	G	A	2848	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.34;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2881,309,0
chrV	505221	.	C	A	2711	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.38;SB=-1.481e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2744,306,0
chrV	505472	.	G	A	2264	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2297,246,0
chrV	505580	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.647;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.551;QD=21.28;ReadPosRankSum=1.693;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1906,216,0
chrV	505622	.	T	C	1617	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.73;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1650,186,0
chrV	506870	.	G	A	2655	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.89;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2688,285,0
chrV	507153	.	C	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.65;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1685,180,0
chrV	507450	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.60;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1434,156,0
chrV	507501	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1483,165,0
chrV	507644	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.76;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1600,168,0
chrV	507671	.	G	A	1439	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4688;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.27;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1472,162,0
chrV	507906	.	C	T	1690	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.0384;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.67;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1723,183,0
chrV	508179	.	A	G	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.420;QD=18.82;ReadPosRankSum=1.680;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1275,141,0
chrV	508274	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.86;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1770,198,0
chrV	508409	.	C	T	666	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=15.49;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:78:699,78,0
chrV	508494	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.263;QD=18.80;ReadPosRankSum=1.674;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1180,132,0
chrV	508532	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.60;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1464,162,0
chrV	508586	.	C	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.22;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1327,144,0
chrV	508632	.	C	G	1183	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.91;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1216,135,0
chrV	508911	.	A	G	816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.803;QD=19.90;ReadPosRankSum=1.395;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:96:849,96,0
chrV	509030	.	T	C	1099	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.62;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1132,129,0
chrV	509062	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.76;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1199,135,0
chrV	509188	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.32;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1232,132,0
chrV	509429	.	C	G	1547	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.91;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1580,180,0
chrV	509583	.	A	G	2549	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.72;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2582,291,0
chrV	509654	.	G	A	1657	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.09;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1690,180,0
chrV	509797	.	G	A	1384	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.96;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1417,156,0
chrV	509843	.	A	G	1521	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3770;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.393;QD=20.01;ReadPosRankSum=1.594;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1554,174,0
chrV	509902	.	G	T	2115	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.58;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2148,231,0
chrV	509938	.	C	T	2472	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.9472;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.59;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,130:133:99:2505,282,0
chrV	510112	.	G	A	1084	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1117,120,0
chrV	510191	.	G	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.11;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1384,150,0
chrV	511431	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.431;QD=19.53;ReadPosRankSum=2.372;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1283,150,0
chrV	511509	.	T	C	1225	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.76;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1258,141,0
chrV	511653	.	C	T	792	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=14.94;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:90:825,90,0
chrV	511800	.	T	C	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=71;Dels=0.00;FS=3.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.336;QD=19.17;ReadPosRankSum=1.584;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1394,159,0
chrV	511824	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.49;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1516,165,0
chrV	512058	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.95;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1549,165,0
chrV	512508	.	C	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.64;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1764,186,0
chrV	512664	.	C	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.62;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1143,129,0
chrV	513154	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.33;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1441,159,0
chrV	513268	.	C	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.56;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1391,156,0
chrV	513424	.	A	T	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=4.344;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-1.533;QD=20.64;ReadPosRankSum=1.613;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1829,198,0
chrV	513469	.	A	G	946	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=3.736;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-0.600;QD=17.85;ReadPosRankSum=1.666;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:979,111,0
chrV	513481	.	G	A	975	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.12;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1008,105,0
chrV	513778	.	C	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.32;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1476,165,0
chrV	513922	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.827;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.495;QD=21.16;ReadPosRankSum=1.683;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1514,171,0
chrV	513941	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.53;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1614,174,0
chrV	514093	.	G	A	1509	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1542,168,0
chrV	514288	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.43;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1379,153,0
chrV	514323	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.19;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1471,156,0
chrV	514855	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.39;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1808,201,0
chrV	515086	.	T	G	1179	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.05;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1212,135,0
chrV	515785	.	T	C	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.327;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.000;QD=21.89;ReadPosRankSum=1.683;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1587,177,0
chrV	515818	.	C	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.72;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1622,171,0
chrV	515827	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=22.44;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1357,150,0
chrV	516235	.	A	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.70;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1337,141,0
chrV	516328	.	C	T	2347	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=16.1672;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.59;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2380,261,0
chrV	516437	.	C	T	2764	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.84;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2797,306,0
chrV	517529	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=245.1809;MLEAC=2;MLEAF=1.00;MQ=45.05;MQ0=0;QD=16.32;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1224,138,0
chrV	517587	.	G	C	944	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=14.30;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:977,111,0
chrV	518464	.	G	A	2081	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.87;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2114,225,0
chrV	519091	.	A	G	990	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.68;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1023,114,0
chrV	519269	.	T	C	677	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,35:37:81:710,81,0
chrV	519704	.	C	A	2205	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.50;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2238,237,0
chrV	520915	.	A	T	2498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=101;Dels=0.00;FS=7.033;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;MQRankSum=0.086;QD=24.73;ReadPosRankSum=1.664;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2531,270,0
chrV	521007	.	T	A	2835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.203;QD=27.52;ReadPosRankSum=2.330;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:2,101:103:99:2868,303,0
chrV	521361	.	G	T	1492	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.01;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1525,165,0
chrV	521398	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1295,144,0
chrV	521557	.	T	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.74;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1062,120,0
chrV	522010	.	C	T	1487	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.09;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1520,165,0
chrV	522133	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.53;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1367,153,0
chrV	522683	.	C	A	1558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;MQRankSum=-0.731;QD=17.31;ReadPosRankSum=0.115;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1591,174,0
chrV	522685	.	T	C	1485	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=16.50;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1518,171,0
chrV	522702	.	G	A	1272	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=12.85;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1305,141,0
chrV	522704	.	A	T	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.854;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;MQRankSum=-1.257;QD=12.41;ReadPosRankSum=1.528;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1299,141,0
chrV	522739	.	A	C	1169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-0.749;QD=12.05;ReadPosRankSum=2.374;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:2,95:97:99:1202,135,0
chrV	523179	.	A	G	448	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.00;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:54:481,54,0
chrV	523260	.	C	A	3164	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.3832;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.44;SB=-1.739e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3197,345,0
chrV	523361	.	G	T	1957	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=25.09;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1990,213,0
chrV	523488	.	A	G	1215	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.0429;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.09;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1248,141,0
chrV	523683	.	T	C	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=3.865;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.557;QD=20.82;ReadPosRankSum=1.670;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1220,135,0
chrV	523920	.	C	T	1000	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.00;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1033,111,0
chrV	524394	.	G	A	1272	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.19;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1305,141,0
chrV	524880	.	G	A	845	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.12;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:878,99,0
chrV	525075	.	G	A	1589	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.11;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1622,186,0
chrV	525941	.	T	C	2622	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.32;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,121:123:99:2655,297,0
chrV	526000	.	A	T	1690	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.24;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1723,186,0
chrV	526712	.	A	T	341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=5.0765;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.528;QD=14.83;ReadPosRankSum=1.583;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:1,22:23:39:374,39,0
chrV	526762	.	A	T	662	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.39;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:75:695,75,0
chrV	527435	.	C	T	2344	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2377,258,0
chrV	527627	.	G	A	3116	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.34;SB=-1.669e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3149,348,0
chrV	528932	.	C	T	2031	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.82;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2064,225,0
chrV	529325	.	G	A	2049	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.80;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2082,222,0
chrV	529484	.	G	T	2089	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.17;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,105:109:99:2122,225,0
chrV	529707	.	T	G	1770	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1803,204,0
chrV	530265	.	A	G	1646	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.21;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1679,189,0
chrV	530348	.	C	T	1911	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.02;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1944,213,0
chrV	530754	.	G	A	2241	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.34;SB=-1.341e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2274,243,0
chrV	530762	.	G	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.33;SB=-1.414e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2400,255,0
chrV	531187	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=2.884;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.263;QD=19.00;ReadPosRankSum=2.369;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1192,132,0
chrV	532254	.	T	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.9071;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.00;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1335,147,0
chrV	532728	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=74;Dels=0.00;FS=9.580;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.274;QD=18.73;ReadPosRankSum=2.823;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1419,159,0
chrV	532763	.	G	A	1902	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.08;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1935,207,0
chrV	533214	.	C	T	1497	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.71;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1530,171,0
chrV	533244	.	C	A	1656	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.48;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1689,183,0
chrV	535209	.	T	C	1017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.529;QD=19.19;ReadPosRankSum=1.664;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:1,50:53:99:1050,117,0
chrV	535342	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.70;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1682,189,0
chrV	535431	.	T	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.80;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1341,144,0
chrV	535583	.	A	G	1633	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.21;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1666,189,0
chrV	536075	.	C	T	2921	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.30;SB=-1.634e+03	GT:AD:DP:GQ:PL	1/1:0,129:131:99:2954,318,0
chrV	536698	.	C	T	2121	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.56;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2154,237,0
chrV	536714	.	T	C	2048	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.90;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2081,231,0
chrV	536854	.	T	C	1928	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=98;Dels=0.00;FS=2.676;HaplotypeScore=10.0537;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.495;QD=19.67;ReadPosRankSum=2.348;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:2,95:98:99:1961,219,0
chrV	537307	.	C	T	2978	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.97;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,157:157:99:3011,339,0
chrV	537745	.	A	G	2640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=121;Dels=0.00;FS=2.591;HaplotypeScore=6.1057;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.392;QD=21.82;ReadPosRankSum=2.875;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:3,118:121:99:2673,300,0
chrV	537801	.	A	C	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.5519;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.866;QD=21.30;ReadPosRankSum=1.689;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1758,195,0
chrV	537913	.	G	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.20;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1467,165,0
chrV	537978	.	G	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.03;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1641,174,0
chrV	538329	.	A	T	696	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.234;QD=18.32;ReadPosRankSum=1.639;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,37:38:81:729,81,0
chrV	538371	.	A	T	134.13	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=8.38;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:18:167,18,0
chrV	538430	.	A	G	1200	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.00;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1233,138,0
chrV	538629	.	G	T	801	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=25.84;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:90:834,90,0
chrV	538885	.	G	C	1361	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.62;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1394,153,0
chrV	539028	.	A	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.68;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1391,156,0
chrV	539614	.	A	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1279,141,0
chrV	539663	.	A	G	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;DP=72;Dels=0.00;FS=3.522;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.962;QD=18.36;ReadPosRankSum=-0.914;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1355,134,0
chrV	539769	.	C	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.26;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1195,129,0
chrV	540205	.	T	C	2518	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2551,288,0
chrV	540352	.	A	G	2526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.8469;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.590;QD=20.37;ReadPosRankSum=1.221;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:1,121:124:99:2559,285,0
chrV	540409	.	C	A	4328.01	PASS	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.18;SB=-2.173e+03	GT:AD:DP:GQ:PL	1/1:0,179:179:99:4328,465,0
chrV	540957	.	C	T	2163	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=13.5546;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.00;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2196,231,0
chrV	541039	.	G	A	1560	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.75;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1593,171,0
chrV	541074	.	C	G	1674	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.74;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1707,189,0
chrV	541157	.	G	C	1819	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.3937;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.95;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1852,210,0
chrV	541279	.	C	A	2228	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.5525;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.45;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2261,240,0
chrV	541352	.	C	T	1833	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.35;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1866,198,0
chrV	541421	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.26;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1613,177,0
chrV	541474	.	T	C	1052	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=3.040;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.556;QD=17.53;ReadPosRankSum=2.286;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1085,120,0
chrV	541487	.	G	A	786	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=14.56;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:819,87,0
chrV	541518	.	T	C	368	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.492;DP=58;Dels=0.00;FS=19.837;HaplotypeScore=8.9104;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=0;MQRankSum=0.134;QD=6.34;ReadPosRankSum=-0.158;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:8,50:58:48:401,48,0
chrV	541537	.	A	G	510	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=0;QD=9.44;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:63:543,63,0
chrV	541538	.	T	A	529	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.35;MQ0=0;QD=9.62;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:60:562,60,0
chrV	541549	.	T	A	698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;MQRankSum=-0.797;QD=11.08;ReadPosRankSum=1.677;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:78:731,78,0
chrV	541579	.	T	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=14.33;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1036,117,0
chrV	541650	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.05;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1557,174,0
chrV	541859	.	G	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=18.82;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1200,135,0
chrV	541873	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=18.55;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1554,165,0
chrV	541972	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.47;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1128,120,0
chrV	541980	.	C	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.54;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1142,120,0
chrV	542481	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.60;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:65:99:1307,147,0
chrV	542641	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.03;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1484,159,0
chrV	542938	.	C	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1206,132,0
chrV	542994	.	G	A	921	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=6.0840;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.71;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:954,108,0
chrV	543103	.	T	C	1186	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=61;Dels=0.00;FS=3.087;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.453;QD=19.44;ReadPosRankSum=2.277;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:2,55:61:99:1219,135,0
chrV	543417	.	C	T	2049	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.11;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2082,222,0
chrV	543765	.	C	T	1714	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.42;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1747,189,0
chrV	544042	.	G	A	622	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.77;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:75:655,75,0
chrV	544296	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=72;Dels=0.00;FS=7.990;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.360;QD=18.25;ReadPosRankSum=-0.086;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1347,150,0
chrV	544569	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.4459;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.671;QD=18.38;ReadPosRankSum=1.676;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,61:66:99:1246,141,0
chrV	545025	.	G	T	953	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:986,105,0
chrV	545109	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.28;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1087,123,0
chrV	545269	.	T	C	433	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=12.74;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:54:466,54,0
chrV	545850	.	G	A	1169	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.19;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1202,132,0
chrV	545863	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-1.400;QD=17.18;ReadPosRankSum=1.685;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1287,147,0
chrV	546069	.	A	C	1159	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.56;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1192,135,0
chrV	546108	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.52;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1224,132,0
chrV	546141	.	T	A	1154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.550;QD=19.90;ReadPosRankSum=0.760;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1187,129,0
chrV	546421	.	T	C	908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=12.229;HaplotypeScore=4.4416;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.079;QD=12.61;ReadPosRankSum=2.279;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:941,108,0
chrV	546436	.	G	A	1511	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7721;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=15.58;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1544,168,0
chrV	546545	.	T	C	2170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.106;QD=23.09;ReadPosRankSum=1.695;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2203,249,0
chrV	546721	.	T	C	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.000;QD=18.62;ReadPosRankSum=1.680;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1262,144,0
chrV	546766	.	T	G	1341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.572;QD=20.32;ReadPosRankSum=1.679;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1374,153,0
chrV	547317	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.499;QD=17.56;ReadPosRankSum=1.615;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1069,120,0
chrV	547434	.	G	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.8422;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.52;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1207,132,0
chrV	547620	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=14.3408;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-1.732;QD=16.69;ReadPosRankSum=1.688;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1368,153,0
chrV	548061	.	T	C	1557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=86;Dels=0.00;FS=6.403;HaplotypeScore=7.3758;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.981;QD=18.10;ReadPosRankSum=1.690;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:1,82:86:99:1590,177,0
chrV	548133	.	C	T	2317	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.50;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2350,252,0
chrV	548298	.	A	G	1051	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.02;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1084,120,0
chrV	548318	.	G	A	912	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.40;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:945,102,0
chrV	548325	.	A	G	813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=3.108;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-1.578;QD=17.67;ReadPosRankSum=1.655;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:93:846,93,0
chrV	548345	.	A	G	1072	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.091;QD=19.85;ReadPosRankSum=1.668;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1105,123,0
chrV	548501	.	T	C	1977	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2010,225,0
chrV	548562	.	A	T	2193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.435;QD=20.69;ReadPosRankSum=1.633;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2226,246,0
chrV	548672	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.17;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1725,183,0
chrV	548869	.	A	T	1936	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.51;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1969,213,0
chrV	549055	.	A	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.48;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1105,126,0
chrV	549124	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.88;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1280,141,0
chrV	549289	.	G	A	1896	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.70;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1929,216,0
chrV	549370	.	T	C	1279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.374;QD=22.05;ReadPosRankSum=1.673;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1312,150,0
chrV	549585	.	C	T	2766	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.62;SB=-1.422e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:2799,297,0
chrV	549631	.	A	G	2823	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.77;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2856,324,0
chrV	549645	.	T	C	2643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.094;QD=22.98;ReadPosRankSum=1.671;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:1,113:115:99:2676,300,0
chrV	549677	.	A	T	1719	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.76;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1752,189,0
chrV	549690	.	A	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=18.12;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1283,141,0
chrV	549802	.	A	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.44;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2017,222,0
chrV	549929	.	C	T	1549	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.45;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1582,171,0
chrV	550011	.	C	T	1478	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4326;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.06;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1511,162,0
chrV	550177	.	G	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.29;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1716,189,0
chrV	550210	.	A	G	1650	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.97;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1683,189,0
chrV	550227	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.54;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1882,201,0
chrV	550261	.	G	T	1422	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=18.23;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1455,159,0
chrV	550284	.	T	C	840	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=13.55;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:96:873,96,0
chrV	550287	.	G	A	886	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=14.77;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:919,99,0
chrV	550341	.	T	C	725	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=15.43;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:758,84,0
chrV	550381	.	A	G	744	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:87:777,87,0
chrV	550566	.	C	T	1481	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.46;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1514,159,0
chrV	550744	.	G	C	1058	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.00;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1091,123,0
chrV	550785	.	T	A	1040	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.11;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1073,114,0
chrV	550834	.	C	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.80;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1052,111,0
chrV	551265	.	T	C	1927	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=20.72;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1960,225,0
chrV	551369	.	G	A	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6671;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.038;QD=16.97;ReadPosRankSum=1.694;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1560,171,0
chrV	551377	.	T	A	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-1.074;QD=18.82;ReadPosRankSum=1.628;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1915,207,0
chrV	551411	.	T	C	1653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=0.815;QD=16.21;ReadPosRankSum=1.698;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1686,195,0
chrV	551439	.	A	G	1720	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=14.83;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:1753,198,0
chrV	551444	.	A	C	1931	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=15.83;SB=-1.526e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:1964,219,0
chrV	551815	.	T	C	2844	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.22;SB=-1.708e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2877,327,0
chrV	551830	.	C	T	3116	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.34;SB=-1.870e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3149,345,0
chrV	552374	.	A	G	4223.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.121;DP=178;Dels=0.00;FS=19.693;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.909;QD=23.72;ReadPosRankSum=4.105;SB=-2.055e+03	GT:AD:DP:GQ:PL	1/1:6,170:178:99:4223,471,0
chrV	552479	.	C	A	2673	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=12.9267;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.09;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2706,285,0
chrV	552597	.	C	T	1968	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.16;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2001,213,0
chrV	552602	.	A	G	1806	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.01;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1839,207,0
chrV	552684	.	T	C	2191	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.67;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2224,246,0
chrV	553016	.	G	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.30;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1338,144,0
chrV	553226	.	T	C	674	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=18.72;SB=-3.201e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:78:707,78,0
chrV	553237	.	G	A	711	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=18.71;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,37:38:81:744,81,0
chrV	553261	.	T	C	538	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=15.82;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:63:571,63,0
chrV	553262	.	T	C	530	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=18.8657;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=15.59;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:63:563,63,0
chrV	553466	.	A	G	848	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:99:881,99,0
chrV	553849	.	C	T	2435	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=22.97;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2468,264,0
chrV	554060	.	G	T	3230.05	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.57;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,156:157:99:3264,357,0
chrV	554139	.	G	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=18.48;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1142,126,0
chrV	554157	.	C	T	782	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.57;MQ0=0;QD=14.75;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:87:815,87,0
chrV	554160	.	G	A	624	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=13.87;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:72:657,72,0
chrV	554162	.	A	G	553	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;MQRankSum=-1.417;QD=12.57;ReadPosRankSum=1.654;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:66:586,66,0
chrV	554170	.	G	A	379	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=6.89;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:45:412,45,0
chrV	554189	.	A	G	285	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=5.70;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:36:318,36,0
chrV	554200	.	C	T	388	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.63;MQ0=0;QD=7.76;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:45:421,45,0
chrV	554219	.	T	C	866	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=12.74;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:96:899,96,0
chrV	554292	.	C	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=37.16;MQ0=0;QD=16.17;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1521,162,0
chrV	554301	.	T	C	1173	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=43.5769;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=14.48;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1206,135,0
chrV	554319	.	A	G	714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.935;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;MQRankSum=-1.494;QD=7.21;ReadPosRankSum=3.747;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:5,94:99:84:747,84,0
chrV	554324	.	A	G	756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.305;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;MQRankSum=1.339;QD=7.79;ReadPosRankSum=1.696;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:87:789,87,0
chrV	554330	.	G	A	789	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=8.39;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:87:822,87,0
chrV	554406	.	T	G	589	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;MQRankSum=-1.155;QD=10.71;ReadPosRankSum=1.668;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:69:622,69,0
chrV	554409	.	G	A	600	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=11.54;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:69:633,69,0
chrV	554414	.	C	T	578	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=12.57;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:66:611,66,0
chrV	554416	.	A	G	539	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.81;MQ0=0;QD=11.72;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:66:572,66,0
chrV	554422	.	C	A	588	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=11.09;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:66:621,66,0
chrV	554437	.	C	T	793	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=35.71;MQ0=0;QD=13.00;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:87:826,87,0
chrV	554500	.	C	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=19.45;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1317,150,0
chrV	554536	.	A	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=21.93;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1678,177,0
chrV	554683	.	G	A	2145	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=21.24;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2178,231,0
chrV	554720	.	C	T	1728	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.55;MQ0=0;QD=18.99;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1761,186,0
chrV	554734	.	C	T	1680	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=20.00;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1713,192,0
chrV	554819	.	A	T	1411	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=22.05;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1444,156,0
chrV	554822	.	A	C	1293	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.675;QD=21.55;ReadPosRankSum=1.674;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1326,147,0
chrV	554823	.	T	C	1315	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.695;DP=63;Dels=0.00;FS=9.462;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=-1.339;QD=20.87;ReadPosRankSum=2.889;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:3,60:63:99:1348,150,0
chrV	554883	.	T	C	1344	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.67;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1377,153,0
chrV	554931	.	T	C	1066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.274;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.917;QD=15.68;ReadPosRankSum=1.630;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1099,123,0
chrV	554949	.	C	T	1314	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=18.25;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1347,147,0
chrV	554977	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=18.24;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1474,165,0
chrV	555084	.	G	A	1660	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=18.65;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1693,180,0
chrV	555089	.	A	T	1666	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.93;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1699,180,0
chrV	555117	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=17.85;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1532,165,0
chrV	555177	.	T	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.95;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1877,210,0
chrV	555234	.	G	A	1886	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.19;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1919,207,0
chrV	555415	.	A	T	1089	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=18.15;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1122,120,0
chrV	555535	.	T	C	1890	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=93;Dels=0.00;FS=11.728;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.462;QD=20.32;ReadPosRankSum=2.924;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:3,89:93:99:1923,213,0
chrV	555788	.	G	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.32;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1824,204,0
chrV	555914	.	T	C	2784	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.92;SB=-1.633e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2817,312,0
chrV	555951	.	C	T	2667	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.81;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2700,288,0
chrV	556026	.	G	A	1964	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.35;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1997,219,0
chrV	556205	.	A	C	1628	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.29;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1661,183,0
chrV	556281	.	G	A	2081	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.14;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2114,222,0
chrV	556443	.	C	T	905	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.05;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:938,99,0
chrV	556662	.	C	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=14.84;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1042,114,0
chrV	556734	.	C	T	1234	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.28;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1267,138,0
chrV	556791	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.95;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1113,123,0
chrV	556815	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.299;QD=21.98;ReadPosRankSum=1.673;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1308,147,0
chrV	557037	.	T	C	825	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=15.87;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:96:858,96,0
chrV	557054	.	G	A	817	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=15.42;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:90:850,90,0
chrV	557076	.	T	C	848	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=18.43;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:881,99,0
chrV	557148	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.638;QD=21.07;ReadPosRankSum=1.672;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1234,138,0
chrV	557265	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.65;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1438,153,0
chrV	557490	.	T	A	1100	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=2.943;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.290;QD=23.40;ReadPosRankSum=2.345;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:99:1133,120,0
chrV	557616	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.61;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1680,183,0
chrV	557877	.	T	C	1511	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.70;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1544,171,0
chrV	558228	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.04;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1155,129,0
chrV	558324	.	C	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.96;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1521,162,0
chrV	558366	.	T	A	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=76;Dels=0.00;FS=2.992;HaplotypeScore=9.4239;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-0.730;QD=20.64;ReadPosRankSum=1.866;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1602,171,0
chrV	558368	.	G	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.46;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1547,165,0
chrV	558441	.	T	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.38;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1541,165,0
chrV	558514	.	G	A	951	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.67;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:984,105,0
chrV	558633	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.69;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1254,135,0
chrV	558993	.	G	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.02;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1755,189,0
chrV	559099	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.685;QD=20.12;ReadPosRankSum=2.328;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1663,189,0
chrV	559138	.	T	C	1651	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.89;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1684,195,0
chrV	559376	.	C	T	2436	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6598;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.95;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2469,273,0
chrV	559384	.	C	T	2382	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.90;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2415,258,0
chrV	559405	.	G	A	1875	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.87;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1908,213,0
chrV	559558	.	C	T	1867	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.23;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1900,207,0
chrV	559696	.	T	C	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1437;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.253;QD=18.37;ReadPosRankSum=1.690;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1558,177,0
chrV	559831	.	T	C	1309	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=19.54;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1342,150,0
chrV	559837	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=19.14;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1430,153,0
chrV	559859	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.36;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1795,198,0
chrV	559862	.	T	C	1716	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.45;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1749,192,0
chrV	560011	.	A	G	1611	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.20;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1644,180,0
chrV	560026	.	T	C	1696	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.43;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1729,189,0
chrV	560290	.	A	C	2378	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.04;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2411,267,0
chrV	560376	.	T	C	2509	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.44;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2542,285,0
chrV	560680	.	T	C	2106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.692;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=0.175;QD=19.32;ReadPosRankSum=1.700;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2139,237,0
chrV	560686	.	A	G	2039	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.21;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2072,237,0
chrV	560715	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;MQRankSum=-2.232;QD=12.24;ReadPosRankSum=2.822;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:3,93:97:99:1220,144,0
chrV	560716	.	G	A	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=4.1207;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;MQRankSum=-0.686;QD=12.55;ReadPosRankSum=1.624;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:1275,147,0
chrV	560810	.	A	C	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=76;Dels=0.00;FS=9.314;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-1.003;QD=20.14;ReadPosRankSum=2.384;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1564,177,0
chrV	560836	.	C	T	1940	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=43.20;MQ0=0;QD=24.87;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1973,213,0
chrV	561097	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=19.83;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1758,189,0
chrV	561145	.	C	T	837	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=34.27;MQ0=0;QD=15.79;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:93:870,93,0
chrV	561154	.	G	A	691	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.42;MQ0=0;QD=15.36;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:724,78,0
chrV	561160	.	C	T	611	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;QD=13.58;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:78:644,78,0
chrV	561163	.	A	G	658	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;MQRankSum=0.930;QD=14.95;ReadPosRankSum=2.338;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:2,42:44:78:691,78,0
chrV	561166	.	G	A	675	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=15.34;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:78:708,78,0
chrV	561193	.	A	G	764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;MQRankSum=-1.984;QD=12.95;ReadPosRankSum=2.881;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:3,56:59:90:797,90,0
chrV	561211	.	G	A	676	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=13.80;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:75:709,75,0
chrV	561220	.	A	G	639	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=13.04;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:75:672,75,0
chrV	561227	.	T	C	700	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=13.46;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,52:52:81:733,81,0
chrV	561269	.	G	A	883	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=18.02;SB=-7.201e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:96:916,96,0
chrV	561292	.	C	G	1098	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=19.61;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1131,126,0
chrV	561299	.	C	T	1353	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=20.82;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1386,147,0
chrV	561309	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=19.67;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1292,144,0
chrV	561353	.	C	T	1208	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=20.47;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1241,141,0
chrV	561355	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=0;QD=20.55;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1266,141,0
chrV	561364	.	T	A	1098	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=18.30;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1131,123,0
chrV	561373	.	T	C	1016	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.64;MQ0=0;QD=18.81;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1049,117,0
chrV	561379	.	C	T	751	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=14.73;SB=-7.201e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:90:784,90,0
chrV	561430	.	A	T	775	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=19.87;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:808,87,0
chrV	561461	.	A	G	521	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=21.71;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:63:554,63,0
chrV	561500	.	A	G	148.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=16.45;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:21:181,21,0
chrV	561502	.	C	T	151.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=16.78;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:21:184,21,0
chrV	561510	.	A	G	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=0.731;QD=9.59;ReadPosRankSum=0.731;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:1,4:5:9:80,9,0
chrV	561524	.	T	A	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=5.70;SB=-2.980e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:6:54,6,0
chrV	561555	.	A	C	134.06	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=13.41;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:21:167,21,0
chrV	561569	.	C	T	105.13	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=8.76;SB=-1.311e+02	GT:AD:DP:GQ:PL	1/1:0,12:12:18:138,18,0
chrV	561578	.	C	T	109.13	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=6.82;SB=-1.441e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:18:142,18,0
chrV	561590	.	G	A	394	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=13.13;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:48:427,48,0
chrV	561678	.	G	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;QD=18.43;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1323,141,0
chrV	561690	.	G	A	931	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=14.55;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:964,114,0
chrV	561692	.	T	A	788	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=12.51;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:96:821,96,0
chrV	561717	.	C	T	593	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.64;MQ0=0;QD=9.41;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:69:626,69,0
chrV	561736	.	G	A	367	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.83;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:45:400,45,0
chrV	561746	.	G	A	309	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=4.98;SB=-1.780e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:39:342,39,0
chrV	561766	.	A	G	197.01	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=3.65;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:27:230,27,0
chrV	561802	.	C	A	304	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=6.76;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:36:337,36,0
chrV	561809	.	T	C	345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;MQRankSum=-0.480;QD=7.04;ReadPosRankSum=2.249;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:42:378,42,0
chrV	561858	.	C	T	855	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=13.79;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:888,99,0
chrV	561877	.	G	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=17.00;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1172,126,0
chrV	561906	.	C	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=17.84;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1175,126,0
chrV	561915	.	A	G	1150	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.01;FS=7.928;HaplotypeScore=17.0416;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=-1.806;QD=16.43;ReadPosRankSum=2.379;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1183,135,0
chrV	562072	.	T	C	2098	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=22.80;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2131,237,0
chrV	562097	.	T	C	1827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=-0.591;QD=21.49;ReadPosRankSum=1.691;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1860,210,0
chrV	562113	.	C	A	2072	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=21.36;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2105,222,0
chrV	562155	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=19.93;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1548,165,0
chrV	562173	.	T	G	1382	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=3.065;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;MQRankSum=-1.685;QD=18.93;ReadPosRankSum=2.381;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:2,69:73:99:1415,156,0
chrV	562264	.	A	G	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=7.189;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=1.364;QD=21.88;ReadPosRankSum=2.391;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1871,210,0
chrV	562315	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.88;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:68:99:1317,150,0
chrV	562359	.	C	T	1755	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.89;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1788,195,0
chrV	562436	.	C	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=15.85;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1364,144,0
chrV	562473	.	A	G	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.569;DP=83;Dels=0.00;FS=7.905;HaplotypeScore=6.8620;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=0.354;QD=15.72;ReadPosRankSum=3.723;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:5,78:83:99:1338,144,0
chrV	562518	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=73;Dels=0.00;FS=2.987;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;MQRankSum=1.765;QD=19.52;ReadPosRankSum=2.381;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:2,70:73:99:1458,165,0
chrV	562559	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=16.79;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1141,123,0
chrV	562570	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.699;QD=16.50;ReadPosRankSum=1.672;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:990,108,0
chrV	562582	.	A	G	1097	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.69;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1130,123,0
chrV	562610	.	C	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.00;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1172,129,0
chrV	562667	.	C	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.60;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1142,123,0
chrV	562683	.	G	A	1187	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=16.72;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1220,129,0
chrV	562846	.	A	G	1047	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.37;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1080,126,0
chrV	562873	.	T	A	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.365;QD=18.93;ReadPosRankSum=1.680;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1320,141,0
chrV	562888	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.41;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1489,165,0
chrV	562916	.	G	C	1604	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.97;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1637,177,0
chrV	563000	.	G	A	1249	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=20.48;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1282,141,0
chrV	563005	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=19.10;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1198,135,0
chrV	563017	.	A	C	1033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.6686;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;MQRankSum=-0.440;QD=17.22;ReadPosRankSum=1.204;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1066,104,0
chrV	563018	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.4573;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=-0.615;QD=17.49;ReadPosRankSum=1.676;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1135,129,0
chrV	563066	.	A	G	941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;MQRankSum=-1.673;QD=15.95;ReadPosRankSum=1.673;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:974,108,0
chrV	563074	.	G	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.28;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1221,132,0
chrV	563104	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=20.07;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1558,177,0
chrV	563174	.	A	G	2094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-0.037;QD=22.28;ReadPosRankSum=1.695;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2127,237,0
chrV	563249	.	T	G	1817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=68.3438;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;MQRankSum=1.693;QD=20.19;ReadPosRankSum=1.693;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,87:90:99:1850,207,0
chrV	563275	.	A	C	1027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=7.782;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;MQRankSum=-1.617;QD=16.84;ReadPosRankSum=1.675;SB=-1.580e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1060,117,0
chrV	563299	.	T	A	581	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=7.75;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:66:614,66,0
chrV	563318	.	T	C	600	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;QD=7.59;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:72:633,72,0
chrV	563320	.	A	G	644	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=7.95;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:75:677,75,0
chrV	563347	.	A	G	724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;MQRankSum=0.378;QD=9.65;ReadPosRankSum=2.384;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:84:757,84,0
chrV	563414	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=14.55;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1008,108,0
chrV	563421	.	T	A	1017	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=13.38;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1050,114,0
chrV	563452	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;QD=14.56;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1504,171,0
chrV	563474	.	T	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=14.46;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1450,165,0
chrV	563507	.	C	T	1687	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=15.92;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1720,189,0
chrV	563513	.	A	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=15.19;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:1613,189,0
chrV	563545	.	G	T	1767	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=16.83;SB=-1.372e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1800,201,0
chrV	563565	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=17.08;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1656,186,0
chrV	563580	.	G	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=14.16;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1364,153,0
chrV	563607	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=12.99;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1059,123,0
chrV	563620	.	T	A	928	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=14.06;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:961,105,0
chrV	563665	.	A	T	1172	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=5.956;HaplotypeScore=4.6924;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;MQRankSum=0.750;QD=17.49;ReadPosRankSum=1.577;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1205,132,0
chrV	563747	.	C	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=22.20;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1609,174,0
chrV	563781	.	G	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=22.05;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1907,207,0
chrV	563807	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=23.41;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1906,213,0
chrV	563882	.	T	A	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.02;FS=4.228;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;MQRankSum=0.423;QD=21.72;ReadPosRankSum=1.655;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2053,222,0
chrV	563956	.	T	C	1543	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=23.03;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1576,177,0
chrV	563964	.	C	G	1576	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.00;FS=4.041;HaplotypeScore=3.4402;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=-1.732;QD=21.89;ReadPosRankSum=1.683;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1609,183,0
chrV	564006	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=23.60;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1614,177,0
chrV	564048	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;MQRankSum=-1.280;QD=19.99;ReadPosRankSum=1.682;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1412,168,0
chrV	564065	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=17.73;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1008,123,0
chrV	564074	.	T	A	872	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=17.44;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:905,108,0
chrV	564097	.	T	C	910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=4.929;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;MQRankSum=0.309;QD=16.25;ReadPosRankSum=1.547;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:943,111,0
chrV	564135	.	C	A	879	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=15.16;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:912,102,0
chrV	564147	.	C	T	865	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=16.32;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:898,99,0
chrV	564195	.	C	A	533	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=9.52;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:66:566,66,0
chrV	564197	.	C	T	478	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=9.02;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:63:511,63,0
chrV	564206	.	G	A	524	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;QD=8.73;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:63:557,63,0
chrV	564212	.	G	A	499	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=7.80;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:60:532,60,0
chrV	564252	.	C	T	545	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=9.56;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:63:578,63,0
chrV	564265	.	T	C	517	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=9.07;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:63:550,63,0
chrV	564272	.	A	T	612	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=11.33;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:72:645,72,0
chrV	564300	.	T	C	735	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;QD=15.00;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:768,90,0
chrV	564304	.	C	A	719	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=14.98;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:752,87,0
chrV	564343	.	A	T	592	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=14.10;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:72:625,72,0
chrV	564355	.	T	C	470	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=0;QD=12.70;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:503,60,0
chrV	564360	.	T	C	467	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.25;MQ0=0;QD=12.29;SB=-1.000e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:60:500,60,0
chrV	564372	.	A	G	402	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=0;QD=11.82;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:54:435,54,0
chrV	564381	.	A	G	336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;MQRankSum=-0.533;QD=9.60;ReadPosRankSum=2.310;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:2,33:35:48:369,48,0
chrV	564395	.	T	G	330	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=0;QD=13.20;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:48:363,48,0
chrV	564396	.	G	A	330	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=0;QD=13.20;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:48:363,48,0
chrV	564397	.	C	T	330	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=0;QD=13.20;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:48:363,48,0
chrV	564403	.	A	G	334	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=0;QD=13.36;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:48:367,48,0
chrV	564406	.	T	G	334	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=0;QD=13.36;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:48:367,48,0
chrV	564431	.	G	A	168.01	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.98;MQ0=0;QD=11.20;SB=-2.327e-02	GT:AD:DP:GQ:PL	1/1:0,15:15:27:201,27,0
chrV	564461	.	G	A	176.03	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=17.60;SB=-3.228e-02	GT:AD:DP:GQ:PL	1/1:0,10:10:24:209,24,0
chrV	564462	.	T	A	173.03	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;QD=17.30;SB=-3.228e-02	GT:AD:DP:GQ:PL	1/1:0,10:10:24:206,24,0
chrV	564472	.	T	G	104.26	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.03;SB=-2.384e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:15:137,15,0
chrV	564485	.	T	C	100.26	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.53;SB=-2.384e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:15:133,15,0
chrV	564486	.	G	C	103.26	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.91;SB=-2.384e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:15:136,15,0
chrV	564535	.	C	T	298	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=12.96;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:39:331,39,0
chrV	564567	.	T	C	404	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.12;MQ0=0;QD=13.47;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:48:437,48,0
chrV	564590	.	T	C	480	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=5.0228;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=14.12;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:2,32:34:57:513,57,0
chrV	564680	.	T	C	120.13	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=17.16;SB=-7.417e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:18:153,18,0
chrV	564809	.	C	T	720	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=20.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:81:753,81,0
chrV	564814	.	T	C	703	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=19.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:84:736,84,0
chrV	564816	.	T	C	724	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=19.57;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:84:757,84,0
chrV	564841	.	G	A	807	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=17.93;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:84:840,84,0
chrV	564865	.	A	G	73.51	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.38;MQ0=0;QD=2.94;SB=-2.752e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:12:106,12,0
chrV	564880	.	A	C	79.51	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=3.31;SB=-2.852e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:12:112,12,0
chrV	564894	.	A	G	106.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=4.09;SB=-5.427e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:15:139,15,0
chrV	564898	.	T	C	77.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=2.77;SB=-5.552e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:12:110,12,0
chrV	564904	.	A	G	76.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=2.94;SB=-5.052e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:12:109,12,0
chrV	564935	.	A	C	127.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.71;SB=-8.614e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:18:160,18,0
chrV	564937	.	T	C	131.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.86;SB=-8.514e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:18:164,18,0
chrV	564938	.	T	C	133.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.371;QD=4.75;ReadPosRankSum=1.609;SB=-8.014e+01	GT:AD:DP:GQ:PL	1/1:1,27:28:18:166,18,0
chrV	564945	.	C	T	186.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=5.17;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:24:219,24,0
chrV	564949	.	A	C	177.03	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=0;QD=4.54;SB=-1.250e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:24:210,24,0
chrV	564968	.	T	C	408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;MQRankSum=-1.924;QD=8.68;ReadPosRankSum=2.345;SB=-1.250e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:51:441,51,0
chrV	565013	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.19;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1252,138,0
chrV	565036	.	G	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.53;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1700,189,0
chrV	565093	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.33;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1193,135,0
chrV	565120	.	T	A	795	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;MQRankSum=-0.208;QD=15.90;ReadPosRankSum=1.455;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:96:828,96,0
chrV	565122	.	T	G	719	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=15.63;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:752,87,0
chrV	565125	.	A	G	801	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=16.69;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:834,93,0
chrV	565208	.	G	A	1436	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.89;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1469,162,0
chrV	565423	.	A	T	995	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=19.90;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1028,111,0
chrV	565448	.	A	G	981	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=20.44;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1014,114,0
chrV	565488	.	T	C	836	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=19.00;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:869,99,0
chrV	565651	.	T	C	2258	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=36.18;MQ0=0;QD=24.54;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2291,255,0
chrV	565675	.	G	T	1614	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=23.39;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1647,177,0
chrV	565711	.	G	A	597	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=18.09;SB=-2.380e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:69:630,69,0
chrV	565722	.	A	T	270	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=10.80;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:33:303,33,0
chrV	565729	.	T	C	207.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=10.90;SB=-2.378e-02	GT:AD:DP:GQ:PL	1/1:0,19:19:27:240,27,0
chrV	565731	.	A	G	206.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-1.004;QD=10.84;ReadPosRankSum=1.552;SB=-2.378e-02	GT:AD:DP:GQ:PL	1/1:1,18:19:27:239,27,0
chrV	565737	.	A	T	215.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=10.75;SB=-2.380e-02	GT:AD:DP:GQ:PL	1/1:0,20:20:27:248,27,0
chrV	565740	.	T	A	190.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=10.56;SB=-4.093e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:24:223,24,0
chrV	565742	.	G	A	184.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=10.22;SB=-4.089e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:24:217,24,0
chrV	565746	.	T	A	181.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=10.65;SB=-4.089e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:24:214,24,0
chrV	565749	.	A	C	174.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=10.24;SB=-4.089e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:24:207,24,0
chrV	565750	.	G	T	183.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=10.77;SB=-4.089e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:24:216,24,0
chrV	565761	.	C	T	125.13	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=6.59;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,19:19:18:158,18,0
chrV	565764	.	C	T	104.26	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=5.79;SB=-2.728e-01	GT:AD:DP:GQ:PL	1/1:0,18:18:15:137,15,0
chrV	565791	.	A	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.63;SB=-1.773e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:54,6,0
chrV	565794	.	T	C	18.82	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.34;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:50,6,0
chrV	565800	.	A	G	20.80	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=1.22;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,17:17:6:52,6,0
chrV	565808	.	C	G	70.51	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=3.92;SB=-2.252e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:12:103,12,0
chrV	565834	.	T	G	231	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=10.04;SB=-2.202e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:30:264,30,0
chrV	565880	.	C	T	471	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=15.19;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:54:504,54,0
chrV	565885	.	A	C	456	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=0;QD=15.72;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:54:489,54,0
chrV	565891	.	T	A	443	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=15.82;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:51:476,51,0
chrV	565893	.	C	T	451	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=16.11;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:51:484,51,0
chrV	565894	.	A	G	425	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=15.18;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:51:458,51,0
chrV	565901	.	G	A	390	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=12.19;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:48:423,48,0
chrV	565902	.	A	G	383	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=11.97;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:48:416,48,0
chrV	565903	.	A	G	389	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=12.16;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:48:422,48,0
chrV	565905	.	A	G	392	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=12.25;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:48:425,48,0
chrV	565909	.	T	G	402	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=0;QD=11.49;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:48:435,48,0
chrV	565932	.	A	G	455	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.11;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:54:488,54,0
chrV	565935	.	A	G	451	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.02;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:54:484,54,0
chrV	565938	.	T	A	464	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.31;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:54:497,54,0
chrV	565939	.	T	G	459	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.20;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:54:492,54,0
chrV	565944	.	A	G	449	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=0.706;QD=8.31;ReadPosRankSum=1.668;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:1,53:54:54:482,54,0
chrV	565950	.	A	T	432	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;MQRankSum=-0.686;QD=8.15;ReadPosRankSum=1.667;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:1,52:53:48:465,48,0
chrV	565953	.	T	C	396	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=7.47;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:48:429,48,0
chrV	565980	.	T	G	425	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=8.02;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:51:458,51,0
chrV	565986	.	A	G	445	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=8.09;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:54:478,54,0
chrV	566006	.	G	C	555	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=10.88;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,51:51:66:588,66,0
chrV	566008	.	G	A	512	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=10.04;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,51:51:60:545,60,0
chrV	566018	.	A	G	365	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;MQRankSum=0.075;QD=8.90;ReadPosRankSum=2.829;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:3,38:41:45:398,45,0
chrV	566019	.	T	C	358	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=9.42;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:45:391,45,0
chrV	566034	.	T	C	366	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=11.09;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:45:399,45,0
chrV	566041	.	C	T	339	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;QD=10.94;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:42:372,42,0
chrV	566046	.	T	C	295	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=10.17;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:39:328,39,0
chrV	566053	.	G	A	207.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=10.35;SB=-2.202e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:27:240,27,0
chrV	566055	.	G	A	183.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=9.15;SB=-2.204e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:24:216,24,0
chrV	566064	.	G	T	185.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=10.88;SB=-2.204e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:24:218,24,0
chrV	566067	.	A	G	147.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=9.19;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:21:180,21,0
chrV	566070	.	A	G	149.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=9.94;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:21:182,21,0
chrV	566149	.	G	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=0.86;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:43,6,0
chrV	566151	.	T	C	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=0.86;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:43,6,0
chrV	566152	.	G	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.18;MQ0=0;QD=0.86;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,14:14:6:43,6,0
chrV	566155	.	G	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.89;MQ0=0;QD=0.80;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,15:15:6:43,6,0
chrV	566160	.	G	T	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=0.67;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,18:18:6:43,6,0
chrV	566166	.	C	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=0.57;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,20:21:6:43,6,0
chrV	566175	.	G	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=0.57;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:1,20:21:6:43,6,0
chrV	566181	.	T	C	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.93;MQ0=0;QD=0.57;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,21:21:6:43,6,0
chrV	566184	.	G	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=0;QD=0.60;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,20:20:6:43,6,0
chrV	566202	.	C	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=0.46;SB=-2.377e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:6:43,6,0
chrV	566231	.	T	G	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=0.69;SB=-2.377e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:6:47,6,0
chrV	566232	.	G	T	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=0.78;SB=-2.377e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:6:49,6,0
chrV	566247	.	C	T	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=0.94;SB=-2.377e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:6:49,6,0
chrV	566512	.	C	A	119.06	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=17.01;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,7:7:21:152,21,0
chrV	566542	.	G	C	410	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=0;QD=18.64;SB=-9.301e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:57:443,57,0
chrV	566565	.	G	A	465	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=0;QD=16.03;SB=-9.401e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:63:498,63,0
chrV	566568	.	T	G	458	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=0;QD=14.77;SB=-9.201e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:63:491,63,0
chrV	566580	.	T	C	637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=6.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.83;MQ0=0;MQRankSum=-1.491;QD=14.81;ReadPosRankSum=1.652;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:84:670,84,0
chrV	566672	.	C	G	264	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=17.60;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:33:297,33,0
chrV	566798	.	C	T	78.51	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=13.09;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:12:111,12,0
chrV	566870	.	T	C	192.12	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.423;DP=19;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=8;MQRankSum=0.791;QD=10.11;ReadPosRankSum=-1.107;SB=-2.312e+01	GT:AD:DP:GQ:PL	1/1:2,17:19:5:223,5,0
chrV	566875	.	C	A	239	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=8;QD=12.58;SB=-5.399e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:33:272,33,0
chrV	566878	.	G	A	283	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=8;QD=14.89;SB=-5.399e+01	GT:AD:DP:GQ:PL	1/1:0,18:19:33:316,33,0
chrV	567098	.	G	T	273	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=0;QD=19.50;SB=-5.100e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:33:306,33,0
chrV	567115	.	T	G	342.04	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=29.42;MQ0=0;MQRankSum=-1.735;QD=13.16;ReadPosRankSum=1.519;SB=-4.605e+01	GT:AD:DP:GQ:PL	1/1:1,15:26:42:375,42,0
chrV	567180	.	A	G	102.26	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=10.23;SB=-2.642e-01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:135,15,0
chrV	567198	.	A	T	18.82	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=2.09;SB=-1.757e+00	GT:AD:DP:GQ:PL	1/1:0,9:9:6:50,6,0
chrV	567203	.	T	C	16.85	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=1.69;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:0,10:10:6:48,6,0
chrV	567207	.	T	G	17.84	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=1.78;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:0,10:10:6:49,6,0
chrV	567210	.	C	T	17.84	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=1.78;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:0,10:10:6:49,6,0
chrV	567215	.	A	G	15.88	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=1.59;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:0,10:10:6:47,6,0
chrV	567221	.	G	C	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=1.49;SB=-1.770e+00	GT:AD:DP:GQ:PL	1/1:0,12:12:6:49,6,0
chrV	567283	.	G	A	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=1.05;SB=-2.677e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:6:48,6,0
chrV	567296	.	T	C	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.61;MQ0=0;QD=1.59;SB=-2.977e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:6:55,6,0
chrV	567300	.	T	C	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=1.30;SB=-2.977e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:6:52,6,0
chrV	567324	.	A	G	49.97	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=3.84;SB=-5.698e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:82,9,0
chrV	567339	.	G	C	49.97	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;QD=5.55;SB=-5.591e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:82,9,0
chrV	567375	.	A	G	44.97	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=5.00;SB=-1.057e+02	GT:AD:DP:GQ:PL	1/1:0,9:9:9:77,9,0
chrV	567395	.	G	A	105.26	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=7.52;SB=-1.642e+02	GT:AD:DP:GQ:PL	1/1:0,14:14:15:138,15,0
chrV	567403	.	C	T	67.51	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=5.19;SB=-1.045e+02	GT:AD:DP:GQ:PL	1/1:0,12:13:12:100,12,0
chrV	567436	.	T	C	184.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=18;Dels=0.00;FS=8.625;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;MQRankSum=1.616;QD=10.22;ReadPosRankSum=2.178;SB=-1.270e+02	GT:AD:DP:GQ:PL	1/1:2,16:18:24:217,24,0
chrV	567461	.	A	G	217	SnpCluster	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.86;MQ0=0;QD=13.56;SB=-1.190e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:30:250,30,0
chrV	567466	.	A	C	196.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=11.53;SB=-1.190e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:27:229,27,0
chrV	567470	.	G	A	196.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=13.07;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:27:229,27,0
chrV	567473	.	T	C	143.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;MQRankSum=-1.488;QD=10.22;ReadPosRankSum=1.488;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:1,13:14:21:176,21,0
chrV	567475	.	C	T	144.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=9.60;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:21:177,21,0
chrV	567560	.	T	G	1041	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.43;MQ0=0;QD=17.64;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1074,120,0
chrV	567575	.	T	C	1108	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=18.47;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1141,123,0
chrV	567597	.	G	A	885	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.55;MQ0=0;QD=14.05;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:918,102,0
chrV	567642	.	G	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.47;MQ0=0;QD=21.99;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1748,192,0
chrV	567681	.	A	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=22.02;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1486,165,0
chrV	567699	.	T	G	970	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.77;MQ0=0;QD=19.80;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1003,120,0
chrV	567720	.	T	C	446	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;QD=15.93;SB=-9.901e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:60:479,60,0
chrV	567724	.	A	G	277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=0.347;QD=13.85;ReadPosRankSum=1.561;SB=-9.701e+01	GT:AD:DP:GQ:PL	1/1:1,19:20:39:310,39,0
chrV	567741	.	G	C	140.06	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=10.00;SB=-6.907e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:21:173,21,0
chrV	567743	.	A	C	139.06	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=8.69;SB=-9.507e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:21:172,21,0
chrV	567757	.	G	A	177.03	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=8.85;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:24:210,24,0
chrV	567867	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;QD=12.54;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:96:886,96,0
chrV	567885	.	G	A	1123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=90;Dels=0.00;FS=3.473;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;MQRankSum=1.693;QD=12.48;ReadPosRankSum=0.837;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1156,123,0
chrV	567899	.	C	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1703;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=12.64;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1234,138,0
chrV	567958	.	G	T	3170	PASS	AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=18.01;SB=-1.648e+03	GT:AD:DP:GQ:PL	1/1:0,175:176:99:3203,354,0
chrV	567960	.	T	A	3295.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.712;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;MQRankSum=-0.299;QD=18.94;ReadPosRankSum=1.652;SB=-1.744e+03	GT:AD:DP:GQ:PL	1/1:1,173:174:99:3295,357,0
chrV	567994	.	T	C	3032	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.9816;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=18.49;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,163:164:99:3065,345,0
chrV	568004	.	G	A	2804	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=2.5165;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=18.09;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:2837,309,0
chrV	568023	.	T	G	203.01	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=1.97;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,25:103:27:236,27,0
chrV	568073	.	T	A	358	SnpCluster	AC=2;AF=1.00;AN=2;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=0;QD=17.05;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:48:391,48,0
chrV	568074	.	C	T	356	SnpCluster	AC=2;AF=1.00;AN=2;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.04;MQ0=0;QD=16.95;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:48:389,48,0
chrV	568077	.	A	G	351	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=15.95;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:48:384,48,0
chrV	568090	.	T	C	400	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=17.39;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:54:433,54,0
chrV	568123	.	A	G	502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;MQRankSum=0.000;QD=19.31;ReadPosRankSum=1.600;SB=-1.520e+02	GT:AD:DP:GQ:PL	1/1:1,25:26:60:535,60,0
chrV	568132	.	A	G	526	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=19.48;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:63:559,63,0
chrV	568152	.	A	G	740	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=20.56;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:773,87,0
chrV	568309	.	G	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=17.91;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1681,183,0
chrV	568351	.	C	T	1085	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=19.37;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1118,120,0
chrV	568377	.	T	C	345	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;QD=15.68;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,20:22:42:378,42,0
chrV	568378	.	G	A	356	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=0;QD=17.80;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:42:389,42,0
chrV	568383	.	A	G	283	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=14.89;SB=-8.632e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:36:316,36,0
chrV	568387	.	C	T	345	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=17.25;SB=-7.050e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:42:378,42,0
chrV	568407	.	A	G	372	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.48;MQ0=0;MQRankSum=0.377;QD=16.17;ReadPosRankSum=1.583;SB=-6.653e-03	GT:AD:DP:GQ:PL	1/1:1,22:23:48:405,48,0
chrV	568408	.	C	T	357	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.30;MQ0=0;QD=16.23;SB=-6.785e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:45:390,45,0
chrV	568423	.	C	T	282	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;QD=13.43;SB=-8.696e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:36:315,36,0
chrV	568461	.	G	A	193.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=10.72;SB=-2.375e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:27:226,27,0
chrV	568469	.	G	A	190.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=0;QD=10.56;SB=-2.375e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:27:223,27,0
chrV	568471	.	T	C	188.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=11.06;SB=-2.375e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:27:221,27,0
chrV	568484	.	A	G	119.13	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=9.16;SB=-1.399e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:18:152,18,0
chrV	569570	.	A	G	78.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.685;DP=83;Dels=0.00;FS=3.060;HaplotypeScore=75.1600;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=4;MQRankSum=1.604;QD=0.94;ReadPosRankSum=0.760;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,38:83:81:108,0,81
chrV	569574	.	C	T	80.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;DP=83;Dels=0.00;FS=3.066;HaplotypeScore=84.8020;MLEAC=1;MLEAF=0.500;MQ=24.27;MQ0=4;MQRankSum=1.495;QD=0.96;ReadPosRankSum=0.927;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,39:83:98:110,0,98
chrV	569575	.	G	A	27.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.816;DP=82;Dels=0.00;FS=19.213;HaplotypeScore=82.8188;MLEAC=1;MLEAF=0.500;MQ=24.21;MQ0=4;MQRankSum=1.142;QD=0.33;ReadPosRankSum=-0.235;SB=-4.249e+00	GT:AD:DP:GQ:PL	0/1:69,13:82:57:57,0,154
chrV	569576	.	T	C	120.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;DP=82;Dels=0.00;FS=13.984;HaplotypeScore=75.3003;MLEAC=1;MLEAF=0.500;MQ=24.21;MQ0=4;MQRankSum=1.788;QD=1.46;ReadPosRankSum=-0.501;SB=-6.530e-03	GT:AD:DP:GQ:PL	0/1:20,62:82:53:150,0,53
chrV	569581	.	G	A	79.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;DP=85;Dels=0.00;FS=6.407;HaplotypeScore=84.5736;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=4;MQRankSum=2.538;QD=0.93;ReadPosRankSum=1.186;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:43,42:85:94:109,0,94
chrV	569583	.	G	A	98.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;DP=85;Dels=0.00;FS=9.020;HaplotypeScore=85.5315;MLEAC=1;MLEAF=0.500;MQ=24.54;MQ0=4;MQRankSum=2.901;QD=1.15;ReadPosRankSum=1.640;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:33,52:85:70:128,0,70
chrV	569586	.	A	G	70.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;DP=83;Dels=0.00;FS=6.652;HaplotypeScore=63.6859;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=4;MQRankSum=3.090;QD=0.84;ReadPosRankSum=1.164;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:41,42:83:99:100,0,102
chrV	569589	.	G	C	122.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DP=83;Dels=0.00;FS=14.095;HaplotypeScore=55.2189;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=4;MQRankSum=2.787;QD=1.47;ReadPosRankSum=-1.275;SB=0.101	GT:AD:DP:GQ:PL	0/1:20,63:83:47:152,0,47
chrV	569598	.	T	G	103.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.171;DP=70;Dels=0.00;FS=9.810;HaplotypeScore=25.3780;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=3;MQRankSum=3.051;QD=1.47;ReadPosRankSum=2.971;SB=-6.525e-03	GT:AD:DP:GQ:PL	0/1:25,45:70:56:133,0,56
chrV	569600	.	G	C	97.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.483;DP=70;Dels=0.00;FS=12.268;HaplotypeScore=25.3780;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=3;MQRankSum=2.236;QD=1.39;ReadPosRankSum=1.127;SB=-6.526e-03	GT:AD:DP:GQ:PL	0/1:18,45:70:55:127,0,55
chrV	569602	.	G	A	108.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.138;DP=74;Dels=0.00;FS=8.834;HaplotypeScore=32.4966;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=3;MQRankSum=4.124;QD=1.46;ReadPosRankSum=3.766;SB=-6.546e-03	GT:AD:DP:GQ:PL	0/1:29,45:74:49:138,0,49
chrV	569604	.	G	A	76.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;DP=77;Dels=0.00;FS=9.544;HaplotypeScore=42.5936;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=3;MQRankSum=1.977;QD=0.99;ReadPosRankSum=2.686;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,49:77:72:106,0,72
chrV	569619	.	C	T	722	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.013;DP=140;Dels=0.03;FS=0.000;HaplotypeScore=85.7927;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=20;MQRankSum=4.201;QD=5.16;ReadPosRankSum=-0.608;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:7,113:136:81:755,81,0
chrV	569626	.	G	A	654.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.778;DP=154;Dels=0.00;FS=2.431;HaplotypeScore=76.2576;MLEAC=1;MLEAF=0.500;MQ=23.49;MQ0=20;MQRankSum=3.619;QD=4.25;ReadPosRankSum=-1.156;SB=-5.301e+01	GT:AD:DP:GQ:PL	0/1:32,118:154:77:684,0,77
chrV	569627	.	G	A	42.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.826;DP=156;Dels=0.00;FS=2.410;HaplotypeScore=76.0596;MLEAC=1;MLEAF=0.500;MQ=23.34;MQ0=20;MQRankSum=-2.824;QD=0.27;ReadPosRankSum=1.704;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:122,31:156:72:72,0,715
chrV	569670	.	T	C	1641	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.363;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=64.6303;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=31;MQRankSum=0.862;QD=9.17;ReadPosRankSum=2.424;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:13,160:179:99:1674,129,0
chrV	569701	.	A	G	818.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.04;MQ0=27;MQRankSum=-3.586;QD=5.28;ReadPosRankSum=7.400;SB=-1.630e+02	GT:AD:DP:GQ:PL	0/1:68,87:155:99:848,0,655
chrV	569706	.	A	T	1553	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=129;Dels=0.00;FS=9.461;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=20.96;MQ0=23;MQRankSum=1.144;QD=12.04;ReadPosRankSum=1.699;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:1,128:129:99:1586,180,0
chrV	569712	.	G	T	42.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.809;DP=125;Dels=0.00;FS=1.554;HaplotypeScore=7.0591;MLEAC=1;MLEAF=0.500;MQ=19.99;MQ0=22;MQRankSum=2.144;QD=0.34;ReadPosRankSum=-2.053;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:95,30:125:72:72,0,890
chrV	569735	.	T	C	551.64	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;DP=91;Dels=0.00;FS=9.980;HaplotypeScore=9.8454;MLEAC=2;MLEAF=1.00;MQ=18.50;MQ0=28;MQRankSum=-0.059;QD=6.06;ReadPosRankSum=2.454;SB=-1.306e+02	GT:AD:DP:GQ:PL	1/1:38,53:91:11:584,11,0
chrV	569746	.	G	A	484.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.9544;MLEAC=1;MLEAF=0.500;MQ=18.76;MQ0=29;MQRankSum=-1.848;QD=5.50;ReadPosRankSum=1.030;SB=-8.422e+01	GT:AD:DP:GQ:PL	0/1:6,80:88:29:514,0,29
chrV	569750	.	G	T	69.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=14.7469;MLEAC=1;MLEAF=0.500;MQ=19.84;MQ0=30;MQRankSum=1.964;QD=0.74;ReadPosRankSum=-3.051;SB=-3.601e+01	GT:AD:DP:GQ:PL	0/1:81,12:93:99:99,0,506
chrV	569783	.	T	C	343.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490;DP=148;Dels=0.00;FS=12.819;HaplotypeScore=20.3605;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=25;MQRankSum=3.820;QD=2.32;ReadPosRankSum=-0.335;SB=-2.110e+02	GT:AD:DP:GQ:PL	0/1:107,41:148:99:373,0,464
chrV	569806	.	G	A	1312	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.651;DP=174;Dels=0.00;FS=14.387;HaplotypeScore=33.6900;MLEAC=2;MLEAF=1.00;MQ=22.19;MQ0=37;MQRankSum=1.930;QD=7.54;ReadPosRankSum=-0.476;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:16,157:174:99:1345,121,0
chrV	569821	.	A	T	681.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.367;DP=190;Dels=0.00;FS=18.349;HaplotypeScore=102.7971;MLEAC=1;MLEAF=0.500;MQ=21.82;MQ0=35;MQRankSum=4.739;QD=3.58;ReadPosRankSum=0.040;SB=-3.270e+02	GT:AD:DP:GQ:PL	0/1:80,54:190:99:711,0,189
chrV	569838	.	A	G	1429.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.110;DP=269;Dels=0.00;FS=45.468;HaplotypeScore=16.5206;MLEAC=1;MLEAF=0.500;MQ=24.77;MQ0=34;MQRankSum=2.355;QD=5.31;ReadPosRankSum=-6.514;SB=-4.430e+02	GT:AD:DP:GQ:PL	0/1:86,182:269:99:1459,0,656
chrV	569854	.	G	A	117.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;DP=308;Dels=0.00;FS=25.384;HaplotypeScore=13.7520;MLEAC=1;MLEAF=0.500;MQ=25.71;MQ0=38;MQRankSum=0.752;QD=0.38;ReadPosRankSum=-0.135;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:265,39:307:99:147,0,2772
chrV	569904	.	C	T	2238.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.922;DP=242;Dels=0.00;FS=50.120;HaplotypeScore=63.3999;MLEAC=1;MLEAF=0.500;MQ=27.27;MQ0=21;MQRankSum=1.970;QD=9.25;ReadPosRankSum=1.940;SB=-4.570e+02	GT:AD:DP:GQ:PL	0/1:85,155:242:99:2268,0,936
chrV	569944	.	G	A	76.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;DP=57;Dels=0.00;FS=27.339;HaplotypeScore=50.1304;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=4;MQRankSum=0.735;QD=1.33;ReadPosRankSum=-2.336;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,11:57:99:106,0,560
chrV	569968	.	C	G	33.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;DP=63;Dels=0.00;FS=4.821;HaplotypeScore=13.6824;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=4;MQRankSum=1.743;QD=0.52;ReadPosRankSum=2.520;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,6:63:63:63,0,306
chrV	569969	.	G	A	136.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;DP=65;Dels=0.00;FS=53.595;HaplotypeScore=13.6824;MLEAC=1;MLEAF=0.500;MQ=21.22;MQ0=4;MQRankSum=2.724;QD=2.09;ReadPosRankSum=-3.408;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,8:65:99:166,0,267
chrV	569976	.	A	G	26.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;DP=68;Dels=0.00;FS=10.220;HaplotypeScore=6.8881;MLEAC=1;MLEAF=0.500;MQ=19.97;MQ0=5;MQRankSum=2.198;QD=0.38;ReadPosRankSum=-1.301;SB=-9.007e+00	GT:AD:DP:GQ:PL	0/1:61,7:68:56:56,0,271
chrV	569994	.	G	A	219.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;DP=65;Dels=0.00;FS=28.993;HaplotypeScore=7.3357;MLEAC=1;MLEAF=0.500;MQ=18.56;MQ0=5;MQRankSum=-1.611;QD=3.37;ReadPosRankSum=2.470;SB=-4.702e+01	GT:AD:DP:GQ:PL	0/1:5,58:65:32:249,0,32
chrV	570012	.	G	A	235.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DP=68;Dels=0.01;FS=43.257;HaplotypeScore=16.6574;MLEAC=1;MLEAF=0.500;MQ=17.86;MQ0=6;MQRankSum=-1.564;QD=3.46;ReadPosRankSum=3.378;SB=-1.502e+01	GT:AD:DP:GQ:PL	0/1:8,59:67:26:265,0,26
chrV	570023	.	G	A	363	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.549;DP=71;Dels=0.01;FS=10.283;HaplotypeScore=12.9676;MLEAC=2;MLEAF=1.00;MQ=20.39;MQ0=7;MQRankSum=-0.804;QD=5.11;ReadPosRankSum=0.882;SB=-4.501e+01	GT:AD:DP:GQ:PL	1/1:5,65:70:45:396,45,0
chrV	570039	.	C	T	364	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=21.31;MQ0=3;QD=8.09;SB=-6.648e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:48:397,48,0
chrV	570041	.	C	T	345	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.04;FS=0.000;HaplotypeScore=15.5468;MLEAC=2;MLEAF=1.00;MQ=21.31;MQ0=3;QD=7.67;SB=-6.777e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:45:378,45,0
chrV	570042	.	G	A	353	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.04;FS=0.000;HaplotypeScore=14.5734;MLEAC=2;MLEAF=1.00;MQ=21.31;MQ0=3;QD=7.84;SB=-6.777e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:45:386,45,0
chrV	570044	.	G	A	331.08	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.441;DP=49;Dels=0.00;FS=19.759;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=20.84;MQ0=4;MQRankSum=0.296;QD=6.76;ReadPosRankSum=0.666;SB=0.240	GT:AD:DP:GQ:PL	1/1:9,40:49:20:364,20,0
chrV	570100	.	A	G	395.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.529;DP=65;Dels=0.02;FS=32.372;HaplotypeScore=54.4788;MLEAC=1;MLEAF=0.500;MQ=22.07;MQ0=2;MQRankSum=0.100;QD=6.08;ReadPosRankSum=-0.354;SB=-2.340e+02	GT:AD:DP:GQ:PL	0/1:12,51:64:18:425,0,18
chrV	570107	.	A	G	38.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;DP=69;Dels=0.01;FS=41.202;HaplotypeScore=113.1386;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=2;MQRankSum=-0.746;QD=0.55;ReadPosRankSum=-2.602;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:47,21:68:68:68,0,339
chrV	570116	.	T	G	194.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=97.6264;MLEAC=1;MLEAF=0.500;MQ=18.95;MQ0=2;MQRankSum=4.088;QD=2.66;ReadPosRankSum=1.441;SB=-8.955e+01	GT:AD:DP:GQ:PL	0/1:50,21:72:99:224,0,170
chrV	570117	.	G	A	201.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;DP=73;Dels=0.01;FS=6.501;HaplotypeScore=96.8211;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=2;MQRankSum=4.588;QD=2.75;ReadPosRankSum=0.858;SB=-9.355e+01	GT:AD:DP:GQ:PL	0/1:57,14:72:99:231,0,145
chrV	570134	.	T	C	213.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DP=91;Dels=0.00;FS=78.048;HaplotypeScore=100.0828;MLEAC=1;MLEAF=0.500;MQ=21.24;MQ0=6;MQRankSum=-1.755;QD=2.34;ReadPosRankSum=-0.429;SB=-1.058e+02	GT:AD:DP:GQ:PL	0/1:53,38:91:99:243,0,250
chrV	570183	.	T	G	99.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;DP=136;Dels=0.00;FS=8.882;HaplotypeScore=41.1561;MLEAC=1;MLEAF=0.500;MQ=26.81;MQ0=10;MQRankSum=-2.249;QD=0.73;ReadPosRankSum=5.902;SB=-1.501e+01	GT:AD:DP:GQ:PL	0/1:115,20:136:99:129,0,847
chrV	570191	.	A	G	98.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;DP=116;Dels=0.00;FS=11.767;HaplotypeScore=67.3641;MLEAC=1;MLEAF=0.500;MQ=28.39;MQ0=9;MQRankSum=-2.753;QD=0.84;ReadPosRankSum=4.431;SB=-9.007e+00	GT:AD:DP:GQ:PL	0/1:96,20:116:99:128,0,925
chrV	570209	.	G	T	530.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DP=118;Dels=0.02;FS=22.620;HaplotypeScore=55.5742;MLEAC=1;MLEAF=0.500;MQ=28.64;MQ0=9;MQRankSum=-5.331;QD=4.49;ReadPosRankSum=-1.546;SB=-1.370e+02	GT:AD:DP:GQ:PL	0/1:37,79:116:99:560,0,508
chrV	570218	.	G	A	951.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.375;DP=108;Dels=0.00;FS=2.839;HaplotypeScore=36.1164;MLEAC=1;MLEAF=0.500;MQ=29.63;MQ0=6;MQRankSum=3.393;QD=8.81;ReadPosRankSum=4.139;SB=-5.704e+01	GT:AD:DP:GQ:PL	0/1:18,90:108:85:981,0,85
chrV	570235	.	G	A	273.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.217;DP=97;Dels=0.00;FS=11.099;HaplotypeScore=105.5960;MLEAC=1;MLEAF=0.500;MQ=29.04;MQ0=4;MQRankSum=1.112;QD=2.81;ReadPosRankSum=2.090;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:64,33:97:99:303,0,378
chrV	570247	.	G	A	272.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;DP=86;Dels=0.00;FS=3.101;HaplotypeScore=96.7658;MLEAC=1;MLEAF=0.500;MQ=27.40;MQ0=2;MQRankSum=3.536;QD=3.16;ReadPosRankSum=-0.179;SB=-3.901e+01	GT:AD:DP:GQ:PL	0/1:59,27:86:99:302,0,335
chrV	570254	.	A	G	207.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=62.9391;MLEAC=1;MLEAF=0.500;MQ=27.25;MQ0=2;MQRankSum=0.105;QD=2.65;ReadPosRankSum=-0.811;SB=-5.501e+01	GT:AD:DP:GQ:PL	0/1:49,28:77:99:237,0,187
chrV	570270	.	A	G	109.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;DP=65;Dels=0.00;FS=5.468;HaplotypeScore=86.7056;MLEAC=1;MLEAF=0.500;MQ=23.98;MQ0=1;MQRankSum=0.954;QD=1.68;ReadPosRankSum=0.438;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,17:65:99:139,0,174
chrV	570271	.	C	G	385	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=98.6217;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=1;QD=6.11;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:48:418,48,0
chrV	570291	.	A	G	118.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.208;DP=60;Dels=0.00;FS=10.189;HaplotypeScore=18.0090;MLEAC=1;MLEAF=0.500;MQ=25.07;MQ0=0;MQRankSum=-0.437;QD=1.97;ReadPosRankSum=-0.748;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,32:60:99:148,0,168
chrV	570295	.	T	G	113.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;DP=57;Dels=0.00;FS=13.424;HaplotypeScore=21.6233;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=0;MQRankSum=0.786;QD=1.98;ReadPosRankSum=2.506;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,21:57:99:143,0,168
chrV	570296	.	G	A	97.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.573;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=27.3553;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=0;MQRankSum=1.305;QD=1.70;ReadPosRankSum=2.582;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,17:57:99:127,0,168
chrV	570307	.	G	C	117.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=72.3873;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=0;MQRankSum=1.274;QD=2.79;ReadPosRankSum=1.688;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:17,17:40:99:147,0,121
chrV	570308	.	G	A	124.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.413;DP=41;Dels=0.05;FS=0.000;HaplotypeScore=80.8991;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=0;MQRankSum=0.955;QD=3.02;ReadPosRankSum=0.234;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:16,17:39:99:154,0,123
chrV	570309	.	C	T	272.33	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.781;DP=40;Dels=0.00;FS=13.018;HaplotypeScore=64.7624;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=0;MQRankSum=2.862;QD=6.81;ReadPosRankSum=2.334;SB=18.68	GT:AD:DP:GQ:PL	1/1:8,26:40:33:305,33,0
chrV	570317	.	A	G	137.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;DP=40;Dels=0.00;FS=3.021;HaplotypeScore=63.1847;MLEAC=1;MLEAF=0.500;MQ=26.61;MQ0=0;MQRankSum=0.739;QD=3.43;ReadPosRankSum=2.599;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:23,17:40:99:167,0,145
chrV	570320	.	T	G	120.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.059;DP=38;Dels=0.00;FS=6.743;HaplotypeScore=31.7867;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=0;MQRankSum=2.228;QD=3.16;ReadPosRankSum=1.737;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:15,17:38:99:150,0,105
chrV	570325	.	A	G	232.64	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=14.7137;MLEAC=2;MLEAF=1.00;MQ=27.04;MQ0=0;MQRankSum=-0.693;QD=7.75;ReadPosRankSum=-1.040;SB=-6.468e-01	GT:AD:DP:GQ:PL	1/1:1,29:30:11:265,11,0
chrV	570568	.	A	T	51.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.010;DP=36;Dels=0.00;FS=5.843;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=11.54;MQ0=15;MQRankSum=1.443;QD=1.42;ReadPosRankSum=1.938;SB=-2.881e+00	GT:AD:DP:GQ:PL	0/1:30,6:36:72:81,0,72
chrV	570575	.	G	T	51.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;DP=33;Dels=0.00;FS=13.691;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=11.30;MQ0=16;MQRankSum=0.854;QD=1.55;ReadPosRankSum=2.864;SB=-2.881e+00	GT:AD:DP:GQ:PL	0/1:27,6:33:72:81,0,72
chrV	570622	.	T	C	42.22	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;DP=34;Dels=0.00;FS=6.368;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=8.59;MQ0=21;MQRankSum=2.163;QD=1.24;ReadPosRankSum=0.696;SB=-2.962e+00	GT:AD:DP:GQ:PL	0/1:29,5:34:10:72,0,10
chrV	570890	.	G	A	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=2.60;MQ0=232;QD=0.06;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:223,20:243:6:45,6,0
chrVI	4649	.	A	G	69.51	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.35;MQ0=31;QD=1.88;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:29,8:37:12:102,12,0
chrVI	4700	.	A	C	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=30;Dels=0.00;FS=5.814;HaplotypeScore=14.8529;MLEAC=1;MLEAF=0.500;MQ=24.51;MQ0=6;MQRankSum=0.116;QD=0.41;ReadPosRankSum=0.194;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,5:30:42:42,0,166
chrVI	5153	.	C	T	16.15	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DP=20;Dels=0.00;FS=4.135;HaplotypeScore=4.7483;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=1;MQRankSum=-0.731;QD=0.81;ReadPosRankSum=0.066;SB=-6.653e+01	GT:AD:DP:GQ:PL	0/1:2,18:20:18:46,0,18
chrVI	5188	.	T	C	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;DP=21;Dels=0.00;FS=9.294;HaplotypeScore=10.5869;MLEAC=1;MLEAF=0.500;MQ=24.52;MQ0=3;MQRankSum=-0.222;QD=0.54;ReadPosRankSum=1.022;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:9,12:21:39:41,0,39
chrVI	5213	.	T	C	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;DP=17;Dels=0.00;FS=5.119;HaplotypeScore=3.9676;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=4;MQRankSum=-0.540;QD=0.67;ReadPosRankSum=0.849;SB=-6.568e-03	GT:AD:DP:GQ:PL	0/1:7,10:17:41:41,0,46
chrVI	5404	.	T	G	91.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=19;Dels=0.00;FS=5.315;HaplotypeScore=3.7089;MLEAC=2;MLEAF=1.00;MQ=16.94;MQ0=1;MQRankSum=-0.714;QD=4.80;ReadPosRankSum=1.531;SB=-2.176e+01	GT:AD:DP:GQ:PL	1/1:1,17:19:15:124,15,0
chrVI	5410	.	T	A	116.13	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.07;MQ0=6;QD=4.84;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:3,19:24:18:149,18,0
chrVI	5435	.	A	G	30.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=14.81;MQ0=21;MQRankSum=1.658;QD=0.68;ReadPosRankSum=-2.563;SB=-6.515e-03	GT:AD:DP:GQ:PL	0/1:37,5:44:60:60,0,100
chrVI	5438	.	T	C	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;DP=46;Dels=0.00;FS=2.682;HaplotypeScore=6.8575;MLEAC=1;MLEAF=0.500;MQ=14.49;MQ0=23;MQRankSum=2.145;QD=0.25;ReadPosRankSum=-1.506;SB=-6.512e-03	GT:AD:DP:GQ:PL	0/1:39,7:46:41:41,0,141
chrVI	5472	.	T	C	201.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=49;Dels=0.00;FS=1.978;HaplotypeScore=6.2995;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=24;MQRankSum=0.922;QD=4.10;ReadPosRankSum=-1.290;SB=-9.801e+01	GT:AD:DP:GQ:PL	0/1:31,17:49:60:231,0,60
chrVI	5503	.	C	T	549	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=21;QD=12.48;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:3,41:44:63:582,63,0
chrVI	5554	.	G	T	212.01	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=6.9161;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=1;QD=11.16;SB=-7.899e+01	GT:AD:DP:GQ:PL	1/1:0,17:19:27:245,27,0
chrVI	5564	.	T	G	121.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=27.57;MQ0=0;QD=15.14;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,7:8:18:154,18,0
chrVI	5569	.	T	A	51.97	PASS	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=0;QD=12.99;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:9:84,9,0
chrVI	5711	.	G	A	121.46	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;DP=18;Dels=0.00;FS=7.549;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=17.42;MQ0=4;MQRankSum=-1.246;QD=6.75;ReadPosRankSum=-0.467;SB=-3.840e+01	GT:AD:DP:GQ:PL	0/1:3,15:18:1:150,0,1
chrVI	5731	.	C	T	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=21;Dels=0.00;FS=5.528;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.50;MQ0=4;MQRankSum=2.965;QD=1.10;ReadPosRankSum=-1.658;SB=-4.000e+01	GT:AD:DP:GQ:PL	0/1:15,6:21:53:53,0,144
chrVI	5734	.	C	G	19.06	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;DP=21;Dels=0.00;FS=5.528;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.50;MQ0=4;MQRankSum=3.166;QD=0.91;ReadPosRankSum=-1.759;SB=-2.000e+01	GT:AD:DP:GQ:PL	0/1:15,6:21:49:49,0,145
chrVI	5735	.	C	T	25.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DP=21;Dels=0.00;FS=5.528;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.50;MQ0=4;MQRankSum=2.764;QD=1.19;ReadPosRankSum=-1.859;SB=-4.500e+01	GT:AD:DP:GQ:PL	0/1:15,6:21:55:55,0,145
chrVI	5739	.	C	T	25.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;DP=21;Dels=0.00;FS=5.528;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=19.50;MQ0=4;MQRankSum=2.563;QD=1.19;ReadPosRankSum=-2.362;SB=-4.700e+01	GT:AD:DP:GQ:PL	0/1:15,6:21:55:55,0,142
chrVI	5740	.	C	T	16.11	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=21;Dels=0.00;FS=5.528;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=19.50;MQ0=4;MQRankSum=2.764;QD=0.77;ReadPosRankSum=-2.362;SB=-4.600e+01	GT:AD:DP:GQ:PL	0/1:15,6:21:46:46,0,144
chrVI	5761	.	A	C	281	SnpCluster	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=0;QD=13.38;SB=-1.260e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:39:314,39,0
chrVI	5764	.	C	T	311	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=24.02;MQ0=0;QD=11.96;SB=-1.260e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:42:344,42,0
chrVI	5767	.	T	A	88.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.6979;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=0;MQRankSum=3.577;QD=2.93;ReadPosRankSum=-1.672;SB=-4.301e+01	GT:AD:DP:GQ:PL	0/1:12,18:30:99:118,0,136
chrVI	5786	.	G	A	59.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;DP=37;Dels=0.00;FS=7.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.93;MQ0=0;MQRankSum=-2.564;QD=1.59;ReadPosRankSum=-3.191;SB=-3.101e+01	GT:AD:DP:GQ:PL	0/1:29,8:37:89:89,0,276
chrVI	5815	.	G	T	253	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=9.37;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:36:286,36,0
chrVI	5825	.	G	A	227	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=1.476;QD=8.41;ReadPosRankSum=-1.476;SB=-1.078e-02	GT:AD:DP:GQ:PL	1/1:1,26:27:33:260,33,0
chrVI	5830	.	T	G	253	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=0.578;QD=9.37;ReadPosRankSum=-1.733;SB=-8.690e-03	GT:AD:DP:GQ:PL	1/1:1,26:27:36:286,36,0
chrVI	5840	.	G	A	205	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=11.8205;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=0;MQRankSum=1.300;QD=8.54;ReadPosRankSum=-1.589;SB=-1.511e-02	GT:AD:DP:GQ:PL	1/1:1,23:24:30:238,30,0
chrVI	5862	.	G	T	16.85	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=2.81;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:48,6,0
chrVI	5865	.	T	G	15.88	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=3.18;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:5:6:47,6,0
chrVI	5866	.	T	C	17.84	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.380;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:2,4:6:6:49,6,0
chrVI	5947	.	C	A	32.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.944;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=0;MQRankSum=0.423;QD=2.54;ReadPosRankSum=-0.085;SB=-1.997e+01	GT:AD:DP:GQ:PL	1/1:3,10:13:9:65,9,0
chrVI	5953	.	G	C	54.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;QD=3.63;SB=-2.252e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:12:87,12,0
chrVI	5955	.	A	C	84.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=0;QD=5.62;SB=-2.227e+01	GT:AD:DP:GQ:PL	1/1:0,14:15:15:117,15,0
chrVI	5957	.	G	T	67.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.268;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=0;MQRankSum=-0.453;QD=3.75;ReadPosRankSum=1.449;SB=2.49	GT:AD:DP:GQ:PL	1/1:7,11:18:12:100,12,0
chrVI	5961	.	C	T	88.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;QD=4.01;SB=-2.227e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:15:121,15,0
chrVI	5970	.	C	T	71.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.52;MQ0=0;MQRankSum=0.651;QD=2.87;ReadPosRankSum=0.425;SB=-2.279e+01	GT:AD:DP:GQ:PL	0/1:9,16:25:4:101,0,4
chrVI	5977	.	T	A	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;DP=27;Dels=0.00;FS=3.174;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.71;MQ0=0;MQRankSum=0.267;QD=0.96;ReadPosRankSum=0.801;SB=-7.384e-03	GT:AD:DP:GQ:PL	0/1:13,14:27:34:56,0,34
chrVI	5982	.	T	C	86.26	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=26.52;MQ0=0;QD=2.97;SB=-2.227e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:15:119,15,0
chrVI	5991	.	A	G	72.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=15.4555;MLEAC=1;MLEAF=0.500;MQ=26.52;MQ0=0;MQRankSum=-1.173;QD=2.49;ReadPosRankSum=0.111;SB=-2.222e+01	GT:AD:DP:GQ:PL	0/1:12,17:29:10:102,0,10
chrVI	6018	.	T	C	90.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.89;MQ0=0;QD=3.76;SB=-2.227e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:15:123,15,0
chrVI	6021	.	G	T	30.07	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.89;MQ0=0;MQRankSum=-1.043;QD=1.25;ReadPosRankSum=1.217;SB=-6.072e-02	GT:AD:DP:GQ:PL	0/1:11,13:24:16:60,0,16
chrVI	6024	.	A	G	30.07	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;DP=23;Dels=0.00;FS=3.203;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=0;MQRankSum=0.954;QD=1.31;ReadPosRankSum=1.569;SB=-6.072e-02	GT:AD:DP:GQ:PL	0/1:11,12:23:16:60,0,16
chrVI	6033	.	T	G	20.27	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;QD=1.07;SB=16.77	GT:AD:DP:GQ:PL	1/1:0,10:19:6:51,6,0
chrVI	6038	.	G	C	12.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=0;MQRankSum=0.625;QD=0.73;ReadPosRankSum=3.127;SB=-7.465e-02	GT:AD:DP:GQ:PL	0/1:9,8:17:15:42,0,15
chrVI	6039	.	T	C	14.21	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.20;MQ0=0;MQRankSum=0.337;QD=0.84;ReadPosRankSum=3.127;SB=-4.080e-02	GT:AD:DP:GQ:PL	0/1:9,8:17:18:44,0,18
chrVI	6097	.	A	G	83.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.434;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=5.7280;MLEAC=2;MLEAF=1.00;MQ=21.77;MQ0=0;MQRankSum=-0.651;QD=4.90;ReadPosRankSum=-0.868;SB=-1.869e-01	GT:AD:DP:GQ:PL	1/1:1,15:17:15:116,15,0
chrVI	6189	.	C	T	143.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;DP=28;Dels=0.00;FS=2.500;HaplotypeScore=9.0138;MLEAC=1;MLEAF=0.500;MQ=24.25;MQ0=0;MQRankSum=0.795;QD=5.11;ReadPosRankSum=-0.795;SB=-1.572e+01	GT:AD:DP:GQ:PL	0/1:6,21:28:18:173,0,18
chrVI	6207	.	G	T	10.52	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=9;Dels=0.00;FS=2.808;HaplotypeScore=14.4080;MLEAC=1;MLEAF=0.500;MQ=17.84;MQ0=0;MQRankSum=-0.361;QD=1.17;ReadPosRankSum=0.361;SB=0.299	GT:AD:DP:GQ:PL	0/1:4,5:9:13:40,0,13
chrVI	6248	.	T	C	69.51	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.41;MQ0=1;QD=7.72;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:102,12,0
chrVI	6256	.	C	A	60.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=11;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=2;MQRankSum=0.751;QD=5.47;ReadPosRankSum=0.751;SB=-3.152e+00	GT:AD:DP:GQ:PL	0/1:2,9:11:11:90,0,11
chrVI	6276	.	C	T	38.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.520;DP=14;Dels=0.00;FS=16.154;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=24.09;MQ0=3;MQRankSum=-0.597;QD=2.71;ReadPosRankSum=1.398;SB=0.527	GT:AD:DP:GQ:PL	0/1:6,8:14:33:68,0,33
chrVI	6297	.	A	C	28.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;DP=18;Dels=0.00;FS=5.426;HaplotypeScore=3.7089;MLEAC=1;MLEAF=0.500;MQ=25.36;MQ0=3;MQRankSum=0.177;QD=1.56;ReadPosRankSum=0.295;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:11,7:18:58:58,0,98
chrVI	6300	.	A	T	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;DP=24;Dels=0.00;FS=2.350;HaplotypeScore=6.2778;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=3;MQRankSum=-1.650;QD=1.08;ReadPosRankSum=-1.750;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,4:24:56:56,0,184
chrVI	6323	.	C	G	250.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.027;DP=51;Dels=0.00;FS=11.844;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.48;MQ0=6;MQRankSum=-2.977;QD=4.90;ReadPosRankSum=-0.290;SB=-2.401e+01	GT:AD:DP:GQ:PL	0/1:33,18:51:99:280,0,416
chrVI	6351	.	A	G	790	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=50;Dels=0.00;FS=2.675;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=5;MQRankSum=-1.583;QD=15.80;ReadPosRankSum=2.840;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:3,46:50:96:823,96,0
chrVI	6354	.	C	A	785	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=5;QD=16.70;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:818,96,0
chrVI	6554	.	T	G	34.12	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891;DP=49;Dels=0.00;FS=30.399;HaplotypeScore=3.6996;MLEAC=1;MLEAF=0.500;MQ=9.94;MQ0=23;MQRankSum=3.134;QD=0.70;ReadPosRankSum=-2.708;SB=-1.071e-01	GT:AD:DP:GQ:PL	0/1:43,6:49:13:64,0,13
chrVI	6556	.	A	C	36.12	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;DP=49;Dels=0.00;FS=30.399;HaplotypeScore=3.6996;MLEAC=1;MLEAF=0.500;MQ=9.94;MQ0=23;MQRankSum=3.134;QD=0.74;ReadPosRankSum=-2.526;SB=-1.071e-01	GT:AD:DP:GQ:PL	0/1:43,6:49:13:66,0,13
chrVI	6563	.	C	T	71.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.050;DP=50;Dels=0.00;FS=60.360;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=10.66;MQ0=23;MQRankSum=3.196;QD=1.43;ReadPosRankSum=-2.123;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:36,14:50:12:104,12,0
chrVI	6686	.	T	C	109.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=4;MQRankSum=-0.248;QD=8.39;ReadPosRankSum=0.248;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:6,7:13:59:139,0,59
chrVI	6736	.	C	T	72.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.378;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=5;MQRankSum=-0.259;QD=4.03;ReadPosRankSum=0.583;SB=2.49	GT:AD:DP:GQ:PL	1/1:11,7:18:12:105,12,0
chrVI	6759	.	A	G	44.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.470;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=17.42;MQ0=4;MQRankSum=0.103;QD=3.21;ReadPosRankSum=0.336;SB=2.03	GT:AD:DP:GQ:PL	1/1:9,5:14:9:77,9,0
chrVI	6763	.	G	A	42.97	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=17.60;MQ0=2;QD=3.91;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:9:75,9,0
chrVI	7016	.	A	T	10.50	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.54;MQ0=7;MQRankSum=-1.734;QD=0.50;ReadPosRankSum=0.456;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:7,14:21:14:40,0,14
chrVI	7032	.	T	A	94.26	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=1;QD=4.96;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,19:19:15:127,15,0
chrVI	7037	.	G	A	96.26	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.48;MQ0=1;QD=5.07;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:0,19:19:15:129,15,0
chrVI	7397	.	G	T	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=15.67;MQ0=9;MQRankSum=-2.890;QD=0.38;ReadPosRankSum=1.445;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:13,22:35:43:43,0,51
chrVI	7415	.	T	C	123.79	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=1;MLEAF=0.500;MQ=21.85;MQ0=8;MQRankSum=1.693;QD=3.87;ReadPosRankSum=-2.985;SB=-1.677e+00	GT:AD:DP:GQ:PL	0/1:13,18:32:4:153,0,4
chrVI	7520	.	T	C	480.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.818;DP=100;Dels=0.00;FS=21.779;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=18.73;MQ0=60;MQRankSum=1.963;QD=4.80;ReadPosRankSum=-1.472;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:23,77:100:3:510,3,0
chrVI	7829	.	G	A	28.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;DP=30;Dels=0.00;FS=21.919;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=6;MQRankSum=1.610;QD=0.93;ReadPosRankSum=2.137;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,12:30:58:58,0,289
chrVI	7834	.	A	G	236.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;DP=35;Dels=0.00;FS=26.499;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.72;MQ0=9;MQRankSum=-1.106;QD=6.74;ReadPosRankSum=-1.723;SB=-8.298e+01	GT:AD:DP:GQ:PL	0/1:16,19:35:55:266,0,55
chrVI	8038	.	C	T	206.01	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.99;MQ0=4;QD=12.88;SB=-2.499e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:27:239,27,0
chrVI	8186	.	T	C	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.84;MQ0=10;QD=1.57;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,12:12:6:50,6,0
chrVI	8262	.	G	A	41.97	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.55;MQ0=28;QD=1.23;SB=-2.121e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:9:74,9,0
chrVI	8323	.	C	T	124.13	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=2;QD=5.91;SB=-2.914e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:18:157,18,0
chrVI	8520	.	T	C	257	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=13;QD=9.88;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:33:290,33,0
chrVI	8532	.	A	G	202.01	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.23;MQ0=16;QD=8.08;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:27:235,27,0
chrVI	8569	.	A	C	73.51	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.78;MQ0=22;QD=2.72;SB=-5.155e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:12:106,12,0
chrVI	8661	.	A	G	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=10;QD=1.17;SB=-5.126e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:6:51,6,0
chrVI	8668	.	A	C	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.83;MQ0=12;QD=1.04;SB=-5.126e+01	GT:AD:DP:GQ:PL	1/1:0,18:19:6:51,6,0
chrVI	8776	.	T	C	97.26	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=3;QD=6.95;SB=-2.826e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:15:130,15,0
chrVI	8786	.	G	A	103.26	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=2;QD=7.94;SB=-2.685e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:15:136,15,0
chrVI	8849	.	G	C	120.13	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.65;MQ0=1;QD=10.92;SB=-1.247e-01	GT:AD:DP:GQ:PL	1/1:0,10:11:18:153,18,0
chrVI	8893	.	A	G	132.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=6;MQRankSum=-0.742;QD=10.16;ReadPosRankSum=0.742;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,11:13:18:165,18,0
chrVI	8902	.	A	G	159.06	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=6;QD=12.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,13:13:21:192,21,0
chrVI	8906	.	T	G	156.06	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=6;QD=12.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,13:13:21:189,21,0
chrVI	8922	.	G	A	186.03	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=25.54;MQ0=9;QD=8.86;SB=-4.897e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:24:219,24,0
chrVI	9286	.	G	A	136.06	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.92;MQ0=12;QD=5.92;SB=-7.062e-02	GT:AD:DP:GQ:PL	1/1:0,23:23:21:169,21,0
chrVI	9356	.	C	T	124.13	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=19.97;MQ0=13;QD=4.97;SB=-1.247e-01	GT:AD:DP:GQ:PL	1/1:0,25:25:18:157,18,0
chrVI	9382	.	G	A	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.38;MQ0=13;QD=0.84;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:6:48,6,0
chrVI	10267	.	T	C	256	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.62;MQ0=17;QD=7.53;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:33:289,33,0
chrVI	10278	.	C	T	258	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.39;MQ0=18;QD=7.17;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:33:291,33,0
chrVI	10430	.	T	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.11;MQ0=29;QD=0.68;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:6:53,6,0
chrVI	10580	.	A	G	183.03	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.62;MQ0=24;QD=5.55;SB=-2.597e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:24:216,24,0
chrVI	10690	.	A	T	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=19;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.09;MQ0=16;MQRankSum=-0.736;QD=0.94;ReadPosRankSum=0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,18:19:6:49,6,0
chrVI	10940	.	T	C	819	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=18;QD=14.62;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:852,96,0
chrVI	10999	.	A	G	331	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=21.07;MQ0=12;QD=12.26;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:42:364,42,0
chrVI	11006	.	A	G	232	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;DP=23;Dels=0.00;FS=18.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.29;MQ0=11;MQRankSum=2.041;QD=10.09;ReadPosRankSum=2.041;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,21:23:30:265,30,0
chrVI	11231	.	G	A	465	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=2;QD=15.50;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:54:498,54,0
chrVI	11258	.	C	T	260	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=3;QD=3.29;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:33:293,33,0
chrVI	11305	.	G	T	2142	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.5796;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=2;QD=15.08;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2175,243,0
chrVI	11324	.	C	A	2107	filter	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=35.43;MQ0=8;QD=15.49;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,133:136:99:2140,234,0
chrVI	11404	.	A	G	120.13	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.21;MQ0=34;QD=2.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,48:48:18:153,18,0
chrVI	11547	.	G	A	77.51	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.35;MQ0=31;QD=1.52;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,51:51:12:110,12,0
chrVI	11581	.	T	C	252	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=21.08;MQ0=26;QD=4.13;SB=-4.601e+01	GT:AD:DP:GQ:PL	1/1:0,61:61:33:285,33,0
chrVI	11599	.	C	A	494	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=17;QD=7.37;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:60:527,60,0
chrVI	11650	.	C	T	1470	filter	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=4;QD=15.81;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1503,165,0
chrVI	12040	.	G	A	939	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=11;QD=13.04;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:972,111,0
chrVI	12112	.	C	T	1320	filter	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.49;MQ0=19;QD=16.10;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1353,147,0
chrVI	12139	.	C	T	1512	filter	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=13;QD=17.58;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1545,168,0
chrVI	12416	.	T	A	2495	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=2;QD=21.14;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2528,282,0
chrVI	12436	.	G	A	2815	filter	AC=2;AF=1.00;AN=2;DP=143;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.89;MQ0=10;QD=19.69;SB=-1.762e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2848,309,0
chrVI	12718	.	C	T	807	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=113;Dels=0.00;FS=32.257;HaplotypeScore=7.3911;MLEAC=2;MLEAF=1.00;MQ=19.12;MQ0=64;MQRankSum=3.268;QD=7.14;ReadPosRankSum=0.493;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:25,88:113:96:840,96,0
chrVI	12795	.	C	T	760	filter	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=17.86;MQ0=61;QD=7.04;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,105:108:90:793,90,0
chrVI	13252	.	T	C	72.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;DP=114;Dels=0.00;FS=4.025;HaplotypeScore=19.9927;MLEAC=1;MLEAF=0.500;MQ=13.39;MQ0=66;MQRankSum=-4.259;QD=0.63;ReadPosRankSum=1.265;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:58,56:114:99:102,0,184
chrVI	13342	.	C	T	72.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;DP=113;Dels=0.00;FS=25.649;HaplotypeScore=4.4131;MLEAC=1;MLEAF=0.500;MQ=20.84;MQ0=37;MQRankSum=-5.211;QD=0.64;ReadPosRankSum=-0.433;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:52,61:113:99:102,0,642
chrVI	13378	.	C	T	207.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.963;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=1;MLEAF=0.500;MQ=15.46;MQ0=42;MQRankSum=3.224;QD=2.76;ReadPosRankSum=0.991;SB=-4.901e+01	GT:AD:DP:GQ:PL	0/1:49,26:75:54:237,0,54
chrVI	13396	.	C	T	118.13	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=9.79;MQ0=39;QD=2.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,58:59:18:151,18,0
chrVI	13627	.	C	A	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DP=137;Dels=0.00;FS=22.093;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=17.31;MQ0=62;MQRankSum=0.078;QD=0.12;ReadPosRankSum=-2.696;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:118,17:137:46:46,0,612
chrVI	13657	.	C	T	108.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.103;DP=204;Dels=0.00;FS=9.692;HaplotypeScore=9.5422;MLEAC=1;MLEAF=0.500;MQ=19.44;MQ0=57;MQRankSum=-5.797;QD=0.53;ReadPosRankSum=-0.159;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:153,51:204:99:138,0,1042
chrVI	13690	.	C	T	441.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=273;Dels=0.00;FS=172.818;HaplotypeScore=56.5116;MLEAC=1;MLEAF=0.500;MQ=20.30;MQ0=49;MQRankSum=3.438;QD=1.62;ReadPosRankSum=-3.506;SB=-4.732e-01	GT:AD:DP:GQ:PL	0/1:191,82:273:99:471,0,1415
chrVI	13696	.	G	A	273.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;DP=273;Dels=0.00;FS=97.631;HaplotypeScore=48.7070;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=52;MQRankSum=6.024;QD=1.00;ReadPosRankSum=-0.279;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:207,64:273:99:303,0,1753
chrVI	13771	.	T	G	1159.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.814;DP=115;Dels=0.00;FS=54.774;HaplotypeScore=13.2382;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=30;MQRankSum=0.633;QD=10.08;ReadPosRankSum=2.896;SB=-3.327e+01	GT:AD:DP:GQ:PL	1/1:18,79:115:15:1192,15,0
chrVI	13997	.	G	T	907	filter	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=18.69;MQ0=28;QD=7.03;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,128:129:99:940,105,0
chrVI	14141	.	A	G	439	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=14.9622;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=5;MQRankSum=-1.155;QD=10.71;ReadPosRankSum=1.540;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:54:472,54,0
chrVI	14248	.	A	G	1102	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=1;QD=20.04;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1135,132,0
chrVI	14343	.	G	A	868	filter	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=12;QD=12.23;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:3,68:71:99:901,102,0
chrVI	14388	.	T	C	609	filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=20.94;MQ0=12;QD=9.52;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/1:3,59:64:72:642,72,0
chrVI	14512	.	A	G	205.01	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=9;QD=5.26;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,35:39:27:238,27,0
chrVI	14878	.	G	A	702.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.963;DP=77;Dels=0.00;FS=18.202;HaplotypeScore=2.6537;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;MQRankSum=0.172;QD=9.12;ReadPosRankSum=2.559;SB=-2.301e+02	GT:AD:DP:GQ:PL	1/1:4,73:77:22:735,22,0
chrVI	14890	.	A	G	475.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;DP=76;Dels=0.00;FS=10.672;HaplotypeScore=4.2321;MLEAC=1;MLEAF=0.500;MQ=33.19;MQ0=0;MQRankSum=-0.830;QD=6.25;ReadPosRankSum=1.162;SB=-2.773e+02	GT:AD:DP:GQ:PL	0/1:7,69:76:8:505,0,8
chrVI	14899	.	C	T	365.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DP=73;Dels=0.00;FS=3.669;HaplotypeScore=3.3999;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=0;MQRankSum=-0.372;QD=5.00;ReadPosRankSum=0.532;SB=-3.120e+02	GT:AD:DP:GQ:PL	0/1:6,67:73:67:395,0,67
chrVI	14901	.	A	G	428.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;DP=74;Dels=0.00;FS=3.599;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=31.83;MQ0=0;MQRankSum=-0.663;QD=5.78;ReadPosRankSum=0.069;SB=-3.830e+02	GT:AD:DP:GQ:PL	0/1:6,68:74:54:458,0,54
chrVI	14911	.	C	T	381.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=66.5462;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=1;MQRankSum=-0.406;QD=4.65;ReadPosRankSum=-1.560;SB=-7.320e+02	GT:AD:DP:GQ:PL	0/1:6,76:82:70:411,0,70
chrVI	14922	.	C	G	22.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=69.5378;MLEAC=1;MLEAF=0.500;MQ=37.31;MQ0=1;MQRankSum=-0.228;QD=0.27;ReadPosRankSum=2.731;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:75,6:81:52:52,0,469
chrVI	14925	.	T	A	602	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=9.760;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=38.88;MQ0=1;MQRankSum=-1.759;QD=7.25;ReadPosRankSum=2.270;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:72:635,72,0
chrVI	14931	.	G	A	28.01	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.787;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=1;MQRankSum=-0.132;QD=0.33;ReadPosRankSum=2.770;SB=-1.101e+01	GT:AD:DP:GQ:PL	0/1:78,6:84:58:58,0,467
chrVI	15147	.	G	A	1514	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8032;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.02;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1547,171,0
chrVI	15150	.	T	C	1395	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=3.010;HaplotypeScore=4.8032;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-1.141;QD=17.01;ReadPosRankSum=2.267;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:2,79:82:99:1428,162,0
chrVI	15152	.	A	G	1417	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9671;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=17.28;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1450,168,0
chrVI	15354	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=17.6519;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=2.745;QD=16.22;ReadPosRankSum=1.708;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:4,66:72:99:1201,116,0
chrVI	15487	.	T	G	3290.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=152;Dels=0.00;FS=2.585;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.914;QD=21.64;ReadPosRankSum=2.954;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:3,149:152:99:3290,366,0
chrVI	15622	.	G	A	1063	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=20.84;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1096,120,0
chrVI	15635	.	G	A	1026	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.73;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1059,114,0
chrVI	15641	.	G	A	989	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.39;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,48:51:99:1022,108,0
chrVI	15708	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.358;QD=21.34;ReadPosRankSum=1.673;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1271,144,0
chrVI	15957	.	G	A	1015	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.50;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1048,117,0
chrVI	15971	.	A	T	839	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.48;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:872,96,0
chrVI	16000	.	C	A	465	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=14.09;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:57:498,57,0
chrVI	16093	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=19.81;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1202,135,0
chrVI	16109	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.36;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1156,129,0
chrVI	16167	.	C	T	1205	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=16.74;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1238,132,0
chrVI	16378	.	T	A	759	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.08;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:792,87,0
chrVI	16602	.	C	T	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.001;DP=93;Dels=0.00;FS=95.353;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=5.953;QD=12.32;ReadPosRankSum=7.599;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:28,64:93:46:1179,46,0
chrVI	16611	.	G	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.65;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1115,126,0
chrVI	16654	.	G	A	1418	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1923;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.85;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1451,156,0
chrVI	16824	.	A	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=16.52;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1520,174,0
chrVI	16830	.	T	C	86.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.334;DP=97;Dels=0.00;FS=14.541;HaplotypeScore=6.5102;MLEAC=1;MLEAF=0.500;MQ=49.45;MQ0=0;MQRankSum=-5.633;QD=0.89;ReadPosRankSum=-0.533;SB=-4.401e+01	GT:AD:DP:GQ:PL	0/1:62,35:97:99:116,0,1051
chrVI	16841	.	T	C	921.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.083;DP=97;Dels=0.00;FS=19.598;HaplotypeScore=7.4996;MLEAC=1;MLEAF=0.500;MQ=50.02;MQ0=0;MQRankSum=5.118;QD=9.49;ReadPosRankSum=0.595;SB=-4.800e+02	GT:AD:DP:GQ:PL	0/1:38,59:97:99:951,0,248
chrVI	16896	.	C	T	611.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.334;DP=122;Dels=0.00;FS=7.188;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=52.61;MQ0=0;MQRankSum=-3.209;QD=5.01;ReadPosRankSum=-1.128;SB=-2.920e+02	GT:AD:DP:GQ:PL	0/1:66,56:122:99:641,0,1105
chrVI	16905	.	T	G	610.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;DP=123;Dels=0.00;FS=4.413;HaplotypeScore=4.1480;MLEAC=1;MLEAF=0.500;MQ=52.84;MQ0=0;MQRankSum=-3.500;QD=4.96;ReadPosRankSum=-0.836;SB=-4.050e+02	GT:AD:DP:GQ:PL	0/1:66,57:123:99:640,0,1024
chrVI	16931	.	A	T	819.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=129;Dels=0.00;FS=0.670;HaplotypeScore=7.6527;MLEAC=1;MLEAF=0.500;MQ=53.24;MQ0=0;MQRankSum=-3.538;QD=6.35;ReadPosRankSum=0.917;SB=-4.810e+02	GT:AD:DP:GQ:PL	0/1:65,64:129:99:849,0,1112
chrVI	17065	.	T	C	1422.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.573;DP=208;Dels=0.00;FS=0.515;HaplotypeScore=19.5375;MLEAC=1;MLEAF=0.500;MQ=52.09;MQ0=0;MQRankSum=-4.499;QD=6.84;ReadPosRankSum=2.442;SB=-7.830e+02	GT:AD:DP:GQ:PL	0/1:114,90:208:99:1452,0,2038
chrVI	17130	.	T	C	1134.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DP=175;Dels=0.00;FS=3.629;HaplotypeScore=12.8023;MLEAC=1;MLEAF=0.500;MQ=55.32;MQ0=0;MQRankSum=-3.441;QD=6.48;ReadPosRankSum=0.390;SB=-5.650e+02	GT:AD:DP:GQ:PL	0/1:102,72:175:99:1164,0,1568
chrVI	17148	.	G	A	996.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;DP=158;Dels=0.00;FS=1.297;HaplotypeScore=17.0735;MLEAC=1;MLEAF=0.500;MQ=56.06;MQ0=0;MQRankSum=-2.481;QD=6.30;ReadPosRankSum=0.142;SB=-4.300e+02	GT:AD:DP:GQ:PL	0/1:90,67:158:99:1026,0,1431
chrVI	17210	.	A	C	3365.01	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.39;SB=-1.882e+03	GT:AD:DP:GQ:PL	1/1:0,164:165:99:3365,378,0
chrVI	17394	.	C	T	2374	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.1424;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.72;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,132:134:99:2407,261,0
chrVI	17399	.	A	G	2143	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.4540;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=16.36;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2176,252,0
chrVI	17653	.	A	G	3226.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.211;QD=21.80;ReadPosRankSum=1.685;SB=-1.775e+03	GT:AD:DP:GQ:PL	1/1:1,147:148:99:3259,360,0
chrVI	17723	.	G	A	717.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;DP=117;Dels=0.00;FS=2.409;HaplotypeScore=12.8631;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-0.229;QD=6.13;ReadPosRankSum=0.439;SB=-5.690e+02	GT:AD:DP:GQ:PL	0/1:60,56:117:99:747,0,957
chrVI	17807	.	C	T	2193	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.5433;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.89;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2226,246,0
chrVI	17843	.	T	C	701.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;DP=108;Dels=0.00;FS=3.578;HaplotypeScore=13.3741;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=-0.578;QD=6.49;ReadPosRankSum=-0.246;SB=-5.340e+02	GT:AD:DP:GQ:PL	0/1:55,53:108:99:731,0,926
chrVI	17852	.	A	G	556.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;DP=107;Dels=0.00;FS=2.592;HaplotypeScore=16.4298;MLEAC=1;MLEAF=0.500;MQ=58.03;MQ0=0;MQRankSum=-1.012;QD=5.20;ReadPosRankSum=0.891;SB=-3.620e+02	GT:AD:DP:GQ:PL	0/1:57,46:107:99:586,0,1038
chrVI	17963	.	C	T	2515	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3426;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=19.80;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2548,285,0
chrVI	17987	.	C	T	2362	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.20;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2395,267,0
chrVI	18011	.	C	T	852.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=148;Dels=0.00;FS=10.133;HaplotypeScore=19.4746;MLEAC=1;MLEAF=0.500;MQ=56.61;MQ0=0;MQRankSum=0.478;QD=5.76;ReadPosRankSum=-1.168;SB=-5.420e+02	GT:AD:DP:GQ:PL	0/1:69,78:148:99:882,0,879
chrVI	18017	.	G	A	908.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;DP=143;Dels=0.00;FS=17.362;HaplotypeScore=17.7989;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=0.214;QD=6.35;ReadPosRankSum=0.521;SB=-4.970e+02	GT:AD:DP:GQ:PL	0/1:74,68:143:99:938,0,1027
chrVI	18128	.	A	G	761.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DP=130;Dels=0.00;FS=3.191;HaplotypeScore=14.6736;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.248;QD=5.85;ReadPosRankSum=1.237;SB=-5.800e+02	GT:AD:DP:GQ:PL	0/1:66,64:130:99:791,0,1144
chrVI	18212	.	G	A	897.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.235;DP=150;Dels=0.00;FS=7.336;HaplotypeScore=17.6588;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-1.430;QD=5.98;ReadPosRankSum=-2.461;SB=-4.300e+02	GT:AD:DP:GQ:PL	0/1:78,71:150:99:927,0,1175
chrVI	18304	.	T	C,G	2597.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.19;MQ0=0;QD=17.43;SB=-1.600e+03	GT:AD:DP:GQ:PL	1/2:0,73,76:149:99:2657,1237,1060,1420,0,1264
chrVI	18339	.	G	A	2166	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.06;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2199,249,0
chrVI	18358	.	G	A	651.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;DP=108;Dels=0.00;FS=7.562;HaplotypeScore=4.9546;MLEAC=1;MLEAF=0.500;MQ=53.37;MQ0=0;MQRankSum=-0.821;QD=6.03;ReadPosRankSum=1.172;SB=-4.200e+02	GT:AD:DP:GQ:PL	0/1:59,49:108:99:681,0,893
chrVI	18380	.	C	T	744.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;DP=112;Dels=0.00;FS=9.175;HaplotypeScore=4.9835;MLEAC=1;MLEAF=0.500;MQ=54.08;MQ0=0;MQRankSum=-1.825;QD=6.64;ReadPosRankSum=-1.255;SB=-4.670e+02	GT:AD:DP:GQ:PL	0/1:58,54:112:99:774,0,895
chrVI	18546	.	A	G	2774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=138;Dels=0.00;FS=3.042;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.569;QD=20.10;ReadPosRankSum=1.505;SB=-1.564e+03	GT:AD:DP:GQ:PL	1/1:1,136:138:99:2807,330,0
chrVI	18618	.	G	A	1299.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.439;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=0.058;QD=8.96;ReadPosRankSum=-0.170;SB=-6.340e+02	GT:AD:DP:GQ:PL	0/1:68,76:145:99:1329,0,1091
chrVI	18651	.	T	C	854.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.624;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.6516;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=0.910;QD=6.33;ReadPosRankSum=1.149;SB=-5.060e+02	GT:AD:DP:GQ:PL	0/1:72,61:135:99:884,0,1334
chrVI	18694	.	T	C	1168.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=144;Dels=0.00;FS=3.076;HaplotypeScore=8.7058;MLEAC=1;MLEAF=0.500;MQ=54.62;MQ0=0;MQRankSum=3.258;QD=8.11;ReadPosRankSum=3.465;SB=-5.270e+02	GT:AD:DP:GQ:PL	0/1:76,66:144:99:1198,0,886
chrVI	18719	.	C	A	749.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.362;DP=136;Dels=0.01;FS=2.399;HaplotypeScore=9.8869;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=0;MQRankSum=-2.385;QD=5.51;ReadPosRankSum=1.250;SB=-3.520e+02	GT:AD:DP:GQ:PL	0/1:67,67:134:99:779,0,1297
chrVI	18731	.	C	T	814.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.339;DP=129;Dels=0.00;FS=1.576;HaplotypeScore=124.0151;MLEAC=1;MLEAF=0.500;MQ=47.42;MQ0=0;MQRankSum=-2.411;QD=6.31;ReadPosRankSum=1.751;SB=-4.300e+02	GT:AD:DP:GQ:PL	0/1:62,67:129:99:844,0,1200
chrVI	18775	.	G	C	1209.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=14.1852;MLEAC=1;MLEAF=0.500;MQ=46.85;MQ0=0;MQRankSum=2.672;QD=7.42;ReadPosRankSum=1.052;SB=-5.960e+02	GT:AD:DP:GQ:PL	0/1:75,86:163:99:1239,0,1016
chrVI	18782	.	A	T	1018.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=170;Dels=0.00;FS=1.289;HaplotypeScore=10.1420;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-3.112;QD=5.99;ReadPosRankSum=-0.422;SB=-5.400e+02	GT:AD:DP:GQ:PL	0/1:94,76:170:99:1048,0,1224
chrVI	18797	.	T	C	747.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;DP=163;Dels=0.00;FS=4.928;HaplotypeScore=7.6069;MLEAC=1;MLEAF=0.500;MQ=48.38;MQ0=0;MQRankSum=-4.604;QD=4.58;ReadPosRankSum=0.186;SB=-5.530e+02	GT:AD:DP:GQ:PL	0/1:92,71:163:99:777,0,1415
chrVI	18810	.	G	C	2718	PASS	AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=6.7544;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=16.37;SB=-1.653e+03	GT:AD:DP:GQ:PL	1/1:0,165:166:99:2751,312,0
chrVI	18816	.	A	T	465.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.919;DP=171;Dels=0.00;FS=8.105;HaplotypeScore=74.8233;MLEAC=1;MLEAF=0.500;MQ=50.61;MQ0=0;MQRankSum=-5.517;QD=2.72;ReadPosRankSum=0.172;SB=-6.990e+02	GT:AD:DP:GQ:PL	0/1:96,75:171:99:495,0,1542
chrVI	19068	.	A	G	4823.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=221;Dels=0.00;FS=5.396;HaplotypeScore=15.0171;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.721;QD=21.82;ReadPosRankSum=2.968;SB=-2.165e+03	GT:AD:DP:GQ:PL	1/1:3,218:221:99:4823,546,0
chrVI	19095	.	A	G	1288.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.861;DP=198;Dels=0.00;FS=1.110;HaplotypeScore=8.1332;MLEAC=1;MLEAF=0.500;MQ=50.35;MQ0=0;MQRankSum=-2.550;QD=6.51;ReadPosRankSum=-1.683;SB=-8.030e+02	GT:AD:DP:GQ:PL	0/1:110,88:198:99:1318,0,2149
chrVI	19100	.	G	C	1296.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891;DP=190;Dels=0.00;FS=0.540;HaplotypeScore=7.1303;MLEAC=1;MLEAF=0.500;MQ=49.88;MQ0=0;MQRankSum=-3.126;QD=6.82;ReadPosRankSum=-1.763;SB=-7.660e+02	GT:AD:DP:GQ:PL	0/1:100,86:190:99:1326,0,1914
chrVI	19108	.	A	G	1044.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.806;DP=188;Dels=0.00;FS=0.540;HaplotypeScore=13.6458;MLEAC=1;MLEAF=0.500;MQ=49.91;MQ0=0;MQRankSum=-2.921;QD=5.55;ReadPosRankSum=0.121;SB=-6.760e+02	GT:AD:DP:GQ:PL	0/1:103,83:188:99:1074,0,1991
chrVI	19129	.	A	T	1256.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.896;DP=173;Dels=0.00;FS=1.915;HaplotypeScore=25.3522;MLEAC=1;MLEAF=0.500;MQ=49.96;MQ0=0;MQRankSum=5.523;QD=7.26;ReadPosRankSum=-1.295;SB=-6.140e+02	GT:AD:DP:GQ:PL	0/1:84,89:173:99:1286,0,1179
chrVI	19184	.	G	A	1290.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.563;DP=142;Dels=0.00;FS=0.620;HaplotypeScore=6.5731;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=3.367;QD=9.08;ReadPosRankSum=1.853;SB=-6.890e+02	GT:AD:DP:GQ:PL	0/1:69,73:142:99:1320,0,1187
chrVI	19196	.	C	A	1273.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.791;DP=144;Dels=0.00;FS=2.104;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=55.69;MQ0=0;MQRankSum=1.182;QD=8.84;ReadPosRankSum=-1.388;SB=-5.990e+02	GT:AD:DP:GQ:PL	0/1:74,70:144:99:1303,0,1262
chrVI	19219	.	C	T	1177.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.380;DP=142;Dels=0.00;FS=2.115;HaplotypeScore=9.8645;MLEAC=1;MLEAF=0.500;MQ=55.84;MQ0=0;MQRankSum=1.272;QD=8.29;ReadPosRankSum=-1.392;SB=-6.980e+02	GT:AD:DP:GQ:PL	0/1:69,72:142:99:1207,0,1231
chrVI	19286	.	T	A	1379.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.802;DP=138;Dels=0.00;FS=7.828;HaplotypeScore=9.0441;MLEAC=1;MLEAF=0.500;MQ=55.89;MQ0=0;MQRankSum=1.598;QD=9.99;ReadPosRankSum=-0.495;SB=-5.150e+02	GT:AD:DP:GQ:PL	0/1:62,76:138:99:1409,0,1005
chrVI	19333	.	T	A	3068	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.31;SB=-1.785e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3101,342,0
chrVI	19346	.	C	T	1076.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;DP=137;Dels=0.00;FS=4.038;HaplotypeScore=4.9168;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=0;MQRankSum=-1.053;QD=7.85;ReadPosRankSum=-2.206;SB=-5.960e+02	GT:AD:DP:GQ:PL	0/1:68,69:137:99:1106,0,1177
chrVI	19414	.	G	A	2102	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.64;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2135,246,0
chrVI	19425	.	A	G	891.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;DP=112;Dels=0.00;FS=0.707;HaplotypeScore=8.7190;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=0;MQRankSum=-0.127;QD=7.96;ReadPosRankSum=-0.133;SB=-4.510e+02	GT:AD:DP:GQ:PL	0/1:57,55:112:99:921,0,923
chrVI	19460	.	T	A	2359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=135;Dels=0.00;FS=6.732;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=1.165;QD=17.47;ReadPosRankSum=2.340;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:2,133:135:99:2392,264,0
chrVI	19466	.	A	C	2564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=-1.241;QD=18.06;ReadPosRankSum=1.708;SB=-1.598e+03	GT:AD:DP:GQ:PL	1/1:1,140:142:99:2597,294,0
chrVI	19489	.	C	T	1154.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.884;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=1;MLEAF=0.500;MQ=52.31;MQ0=0;MQRankSum=-0.560;QD=7.85;ReadPosRankSum=-0.172;SB=-6.600e+02	GT:AD:DP:GQ:PL	0/1:73,74:147:99:1184,0,1064
chrVI	19556	.	C	T	1280.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DP=145;Dels=0.00;FS=3.042;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=51.87;MQ0=0;MQRankSum=2.595;QD=8.83;ReadPosRankSum=-0.724;SB=-6.700e+02	GT:AD:DP:GQ:PL	0/1:62,78:145:99:1310,0,1035
chrVI	19604	.	A	T	3441.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=21.24;SB=-1.670e+03	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3441,381,0
chrVI	19616	.	C	T	3454.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=23.50;SB=-1.526e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3454,378,0
chrVI	19711	.	C	T	2744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.598;QD=24.72;ReadPosRankSum=0.787;SB=-1.436e+03	GT:AD:DP:GQ:PL	1/1:1,109:111:99:2777,300,0
chrVI	19827	.	G	T	768.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DP=84;Dels=0.00;FS=5.787;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=0;MQRankSum=-0.937;QD=9.14;ReadPosRankSum=1.568;SB=-4.350e+02	GT:AD:DP:GQ:PL	0/1:39,45:84:99:798,0,629
chrVI	19853	.	C	G	597.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=1;MLEAF=0.500;MQ=50.88;MQ0=0;MQRankSum=-2.703;QD=6.63;ReadPosRankSum=0.174;SB=-4.760e+02	GT:AD:DP:GQ:PL	0/1:36,52:90:99:627,0,606
chrVI	19876	.	A	T	622.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.315;DP=109;Dels=0.00;FS=3.550;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=48.47;MQ0=0;MQRankSum=-4.017;QD=5.71;ReadPosRankSum=0.903;SB=-5.270e+02	GT:AD:DP:GQ:PL	0/1:50,59:109:99:652,0,963
chrVI	19914	.	A	T	341.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DP=97;Dels=0.00;FS=6.470;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.67;MQ0=0;MQRankSum=-7.300;QD=3.52;ReadPosRankSum=-0.899;SB=-4.360e+02	GT:AD:DP:GQ:PL	0/1:46,51:97:99:371,0,886
chrVI	19919	.	C	T	378.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.829;DP=103;Dels=0.00;FS=9.458;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=44.22;MQ0=0;MQRankSum=-6.290;QD=3.67;ReadPosRankSum=0.612;SB=-3.470e+02	GT:AD:DP:GQ:PL	0/1:55,48:103:99:408,0,926
chrVI	19923	.	T	C	1607	SnpCluster	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=15.45;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1640,180,0
chrVI	19942	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;MQRankSum=-0.733;QD=14.74;ReadPosRankSum=1.699;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:1,103:105:99:1581,180,0
chrVI	19952	.	C	A	212.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.494;DP=118;Dels=0.00;FS=4.568;HaplotypeScore=8.2019;MLEAC=1;MLEAF=0.500;MQ=45.76;MQ0=0;MQRankSum=-7.654;QD=1.80;ReadPosRankSum=-0.301;SB=-3.830e+02	GT:AD:DP:GQ:PL	0/1:68,49:118:99:242,0,1076
chrVI	19961	.	C	A	101.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;DP=105;Dels=0.00;FS=3.764;HaplotypeScore=8.8059;MLEAC=1;MLEAF=0.500;MQ=45.74;MQ0=0;MQRankSum=-6.606;QD=0.96;ReadPosRankSum=-1.169;SB=-3.540e+02	GT:AD:DP:GQ:PL	0/1:62,41:105:99:131,0,1035
chrVI	19969	.	G	C	111.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;DP=107;Dels=0.00;FS=3.699;HaplotypeScore=4.0303;MLEAC=1;MLEAF=0.500;MQ=45.93;MQ0=0;MQRankSum=-7.343;QD=1.04;ReadPosRankSum=-0.169;SB=-3.300e+02	GT:AD:DP:GQ:PL	0/1:65,41:107:99:141,0,1113
chrVI	19972	.	C	T	106.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;DP=116;Dels=0.00;FS=1.519;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=45.63;MQ0=0;MQRankSum=-7.245;QD=0.91;ReadPosRankSum=-0.989;SB=-3.850e+02	GT:AD:DP:GQ:PL	0/1:68,48:116:99:136,0,1121
chrVI	19980	.	C	T	98.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;DP=131;Dels=0.00;FS=0.668;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=47.05;MQ0=0;MQRankSum=-6.685;QD=0.75;ReadPosRankSum=-0.301;SB=-3.460e+02	GT:AD:DP:GQ:PL	0/1:76,55:131:99:128,0,1250
chrVI	20043	.	C	T	712.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.958;DP=144;Dels=0.00;FS=10.183;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.32;MQ0=0;MQRankSum=-2.532;QD=4.94;ReadPosRankSum=2.013;SB=-5.840e+02	GT:AD:DP:GQ:PL	0/1:70,74:144:99:742,0,1235
chrVI	20049	.	A	G	2537	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=17.38;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,145:146:99:2570,291,0
chrVI	20087	.	C	T	679.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.736;DP=148;Dels=0.00;FS=3.641;HaplotypeScore=6.5102;MLEAC=1;MLEAF=0.500;MQ=48.91;MQ0=0;MQRankSum=-3.527;QD=4.59;ReadPosRankSum=-1.704;SB=-3.880e+02	GT:AD:DP:GQ:PL	0/1:67,81:148:99:709,0,1218
chrVI	20096	.	C	T	555.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.622;DP=148;Dels=0.00;FS=2.830;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=48.14;MQ0=0;MQRankSum=-4.753;QD=3.75;ReadPosRankSum=-1.799;SB=-1.960e+02	GT:AD:DP:GQ:PL	0/1:69,78:148:99:585,0,1249
chrVI	20103	.	T	C	2420	SnpCluster	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=16.69;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,144:145:99:2453,279,0
chrVI	20104	.	T	C	1271.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;DP=145;Dels=0.00;FS=0.811;HaplotypeScore=0.9894;MLEAC=1;MLEAF=0.500;MQ=47.46;MQ0=0;MQRankSum=5.192;QD=8.77;ReadPosRankSum=0.806;SB=-2.680e+02	GT:AD:DP:GQ:PL	0/1:77,68:145:99:1301,0,636
chrVI	20134	.	T	C	2151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.376;DP=129;Dels=0.00;FS=2.374;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=0.768;QD=16.67;ReadPosRankSum=3.390;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:4,125:129:99:2184,246,0
chrVI	20162	.	T	C	1993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=-0.844;QD=17.03;ReadPosRankSum=1.703;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2026,228,0
chrVI	20170	.	A	G	1980	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=18.17;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2013,225,0
chrVI	20226	.	A	G	1226.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700;DP=118;Dels=0.00;FS=7.360;HaplotypeScore=7.3915;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=0;MQRankSum=-3.046;QD=10.39;ReadPosRankSum=0.833;SB=-4.910e+02	GT:AD:DP:GQ:PL	0/1:50,67:118:99:1256,0,712
chrVI	20296	.	C	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=17.96;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1955,216,0
chrVI	20333	.	T	G	823.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;DP=152;Dels=0.00;FS=45.043;HaplotypeScore=5.9062;MLEAC=1;MLEAF=0.500;MQ=51.15;MQ0=0;MQRankSum=-3.806;QD=5.41;ReadPosRankSum=-0.225;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,57:152:99:853,0,1681
chrVI	20335	.	A	G	867.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.227;DP=162;Dels=0.00;FS=47.600;HaplotypeScore=6.6949;MLEAC=1;MLEAF=0.500;MQ=51.07;MQ0=0;MQRankSum=-3.462;QD=5.35;ReadPosRankSum=-0.135;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:100,62:162:99:897,0,1629
chrVI	20390	.	A	G	1621.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.583;DP=220;Dels=0.00;FS=10.040;HaplotypeScore=11.4073;MLEAC=1;MLEAF=0.500;MQ=50.21;MQ0=0;MQRankSum=-5.668;QD=7.37;ReadPosRankSum=0.293;SB=-2.510e+02	GT:AD:DP:GQ:PL	0/1:115,105:220:99:1651,0,1936
chrVI	20451	.	A	G	2329	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.1514;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=18.20;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2362,273,0
chrVI	20523	.	G	A	100.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.427;DP=52;Dels=0.00;FS=14.797;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.147;QD=1.92;ReadPosRankSum=0.074;SB=-2.850e+02	GT:AD:DP:GQ:PL	0/1:23,29:52:99:130,0,153
chrVI	20548	.	A	G	163.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;DP=41;Dels=0.00;FS=5.098;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.569;QD=3.98;ReadPosRankSum=-0.966;SB=-1.670e+02	GT:AD:DP:GQ:PL	0/1:17,24:41:99:193,0,144
chrVI	20567	.	A	C	464	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.05;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:497,54,0
chrVI	20569	.	G	A	442	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.52;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:51:475,51,0
chrVI	20573	.	T	A	407	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=6.690;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=30.11;MQ0=0;MQRankSum=-1.733;QD=9.69;ReadPosRankSum=1.650;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:48:440,48,0
chrVI	20574	.	G	A	230.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.801;DP=42;Dels=0.02;FS=1.632;HaplotypeScore=4.6547;MLEAC=1;MLEAF=0.500;MQ=30.11;MQ0=0;MQRankSum=0.149;QD=5.48;ReadPosRankSum=1.042;SB=-1.420e+02	GT:AD:DP:GQ:PL	0/1:15,26:41:88:260,0,88
chrVI	20580	.	T	C	462	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=11.55;SB=-1.850e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:54:495,54,0
chrVI	20600	.	C	A	169.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DP=53;Dels=0.02;FS=21.392;HaplotypeScore=21.2842;MLEAC=1;MLEAF=0.500;MQ=51.10;MQ0=0;MQRankSum=1.716;QD=3.19;ReadPosRankSum=-1.610;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:33,16:52:99:199,0,488
chrVI	20636	.	C	T	952.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.500;DP=95;Dels=0.00;FS=19.757;HaplotypeScore=83.8754;MLEAC=1;MLEAF=0.500;MQ=53.06;MQ0=0;MQRankSum=-1.262;QD=10.02;ReadPosRankSum=-0.982;SB=-5.660e+02	GT:AD:DP:GQ:PL	0/1:34,61:95:99:982,0,471
chrVI	20719	.	C	G	1745	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=46.5152;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=15.44;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:1778,201,0
chrVI	20729	.	T	G	713.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.075;DP=105;Dels=0.00;FS=10.224;HaplotypeScore=45.5799;MLEAC=1;MLEAF=0.500;MQ=43.50;MQ0=0;MQRankSum=2.858;QD=6.79;ReadPosRankSum=-1.898;SB=-4.400e+02	GT:AD:DP:GQ:PL	0/1:47,58:105:99:743,0,437
chrVI	20748	.	G	A	405.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;DP=101;Dels=0.00;FS=13.190;HaplotypeScore=6.0276;MLEAC=1;MLEAF=0.500;MQ=41.02;MQ0=0;MQRankSum=-3.931;QD=4.01;ReadPosRankSum=-1.118;SB=-1.600e+02	GT:AD:DP:GQ:PL	0/1:52,49:101:99:435,0,717
chrVI	20752	.	A	C	299.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;DP=101;Dels=0.00;FS=9.125;HaplotypeScore=5.3626;MLEAC=1;MLEAF=0.500;MQ=40.35;MQ0=0;MQRankSum=-3.984;QD=2.96;ReadPosRankSum=-0.935;SB=-1.410e+02	GT:AD:DP:GQ:PL	0/1:55,46:101:99:329,0,718
chrVI	20756	.	A	T	241.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;DP=93;Dels=0.00;FS=11.795;HaplotypeScore=4.4294;MLEAC=1;MLEAF=0.500;MQ=39.33;MQ0=0;MQRankSum=-4.227;QD=2.59;ReadPosRankSum=-0.600;SB=-1.100e+02	GT:AD:DP:GQ:PL	0/1:53,40:93:99:271,0,708
chrVI	20768	.	C	T	1074	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=13.77;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1107,123,0
chrVI	20769	.	G	C	160.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=80;Dels=0.00;FS=18.989;HaplotypeScore=3.0311;MLEAC=1;MLEAF=0.500;MQ=39.39;MQ0=0;MQRankSum=-3.203;QD=2.00;ReadPosRankSum=1.236;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:52,28:80:99:190,0,597
chrVI	20770	.	G	A	166.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;DP=83;Dels=0.00;FS=13.396;HaplotypeScore=5.3972;MLEAC=1;MLEAF=0.500;MQ=40.32;MQ0=0;MQRankSum=-3.143;QD=2.00;ReadPosRankSum=0.671;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:51,29:83:99:196,0,643
chrVI	20774	.	T	C	960	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=83;Dels=0.00;FS=2.504;HaplotypeScore=7.4538;MLEAC=2;MLEAF=1.00;MQ=40.32;MQ0=0;MQRankSum=-2.354;QD=11.57;ReadPosRankSum=2.916;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:3,80:83:99:993,111,0
chrVI	20817	.	T	C	2383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.238;QD=19.86;ReadPosRankSum=2.408;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:2,117:120:99:2416,273,0
chrVI	20921	.	T	C	675.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.267;DP=79;Dels=0.00;FS=3.504;HaplotypeScore=4.1915;MLEAC=1;MLEAF=0.500;MQ=56.77;MQ0=0;MQRankSum=0.811;QD=8.54;ReadPosRankSum=-0.319;SB=-1.400e+02	GT:AD:DP:GQ:PL	0/1:42,37:79:99:705,0,786
chrVI	20952	.	A	T	790.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.0152;MLEAC=1;MLEAF=0.500;MQ=55.21;MQ0=0;MQRankSum=1.697;QD=9.88;ReadPosRankSum=1.117;SB=-3.730e+02	GT:AD:DP:GQ:PL	0/1:36,44:80:99:820,0,616
chrVI	21060	.	G	A	1104.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;DP=123;Dels=0.00;FS=0.669;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=53.52;MQ0=0;MQRankSum=-1.145;QD=8.98;ReadPosRankSum=0.795;SB=-6.510e+02	GT:AD:DP:GQ:PL	0/1:56,67:123:99:1134,0,815
chrVI	21171	.	A	T	1120.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=13.6202;MLEAC=1;MLEAF=0.500;MQ=55.76;MQ0=0;MQRankSum=1.137;QD=7.67;ReadPosRankSum=0.282;SB=-3.970e+02	GT:AD:DP:GQ:PL	0/1:72,74:146:99:1150,0,970
chrVI	21267	.	A	G	2772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.401;QD=20.38;ReadPosRankSum=1.656;SB=-1.728e+03	GT:AD:DP:GQ:PL	1/1:1,135:136:99:2805,309,0
chrVI	21408	.	G	A	2074	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.4470;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.73;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2107,240,0
chrVI	21492	.	A	G	1018.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;DP=126;Dels=0.00;FS=26.490;HaplotypeScore=8.9236;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=-0.160;QD=8.08;ReadPosRankSum=-0.062;SB=-4.460e+02	GT:AD:DP:GQ:PL	0/1:62,63:126:99:1048,0,1186
chrVI	21552	.	C	A	1116.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.792;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=16.1438;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=-0.852;QD=8.72;ReadPosRankSum=-0.427;SB=-6.260e+02	GT:AD:DP:GQ:PL	0/1:60,68:128:99:1146,0,961
chrVI	21881	.	G	A	1039.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;DP=132;Dels=0.00;FS=2.227;HaplotypeScore=9.8069;MLEAC=1;MLEAF=0.500;MQ=59.30;MQ0=0;MQRankSum=0.554;QD=7.87;ReadPosRankSum=1.502;SB=-4.800e+02	GT:AD:DP:GQ:PL	0/1:70,62:132:99:1069,0,1079
chrVI	21975	.	G	A	1089.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.672;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=0;MQRankSum=1.202;QD=7.56;ReadPosRankSum=-1.400;SB=-6.770e+02	GT:AD:DP:GQ:PL	0/1:71,71:144:99:1119,0,1236
chrVI	21999	.	C	T	3346.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=10.2470;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.78;SB=-1.742e+03	GT:AD:DP:GQ:PL	1/1:0,159:161:99:3346,372,0
chrVI	22014	.	C	T	944.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.572;DP=142;Dels=0.00;FS=3.055;HaplotypeScore=5.9139;MLEAC=1;MLEAF=0.500;MQ=56.63;MQ0=0;MQRankSum=0.524;QD=6.65;ReadPosRankSum=0.238;SB=-6.100e+02	GT:AD:DP:GQ:PL	0/1:77,64:142:99:974,0,1084
chrVI	22035	.	A	G	1190.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;DP=148;Dels=0.00;FS=1.360;HaplotypeScore=13.7846;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=0;MQRankSum=0.691;QD=8.04;ReadPosRankSum=0.087;SB=-6.270e+02	GT:AD:DP:GQ:PL	0/1:65,83:148:99:1220,0,818
chrVI	22065	.	A	T	1060.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;DP=133;Dels=0.00;FS=8.178;HaplotypeScore=2.8149;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=0.128;QD=7.97;ReadPosRankSum=2.185;SB=-4.050e+02	GT:AD:DP:GQ:PL	0/1:65,68:133:99:1090,0,1101
chrVI	22204	.	C	G	2315	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.52;SB=-1.472e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2348,273,0
chrVI	22274	.	T	C	1154.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;DP=158;Dels=0.00;FS=2.924;HaplotypeScore=19.5524;MLEAC=1;MLEAF=0.500;MQ=59.12;MQ0=0;MQRankSum=-0.131;QD=7.30;ReadPosRankSum=1.537;SB=-5.630e+02	GT:AD:DP:GQ:PL	0/1:78,79:158:99:1184,0,895
chrVI	22344	.	G	A	1014.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;DP=174;Dels=0.00;FS=6.644;HaplotypeScore=12.0410;MLEAC=1;MLEAF=0.500;MQ=58.26;MQ0=0;MQRankSum=-0.507;QD=5.83;ReadPosRankSum=-0.251;SB=-6.770e+02	GT:AD:DP:GQ:PL	0/1:76,94:174:99:1044,0,1168
chrVI	22395	.	A	G	1182.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DP=168;Dels=0.00;FS=3.621;HaplotypeScore=21.6917;MLEAC=1;MLEAF=0.500;MQ=56.53;MQ0=0;MQRankSum=-0.020;QD=7.04;ReadPosRankSum=0.029;SB=-8.650e+02	GT:AD:DP:GQ:PL	0/1:74,93:168:99:1212,0,989
chrVI	22414	.	A	C	1304.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.465;DP=175;Dels=0.00;FS=15.219;HaplotypeScore=11.4586;MLEAC=1;MLEAF=0.500;MQ=56.68;MQ0=0;MQRankSum=-1.597;QD=7.45;ReadPosRankSum=0.667;SB=-8.470e+02	GT:AD:DP:GQ:PL	0/1:74,99:175:99:1334,0,1105
chrVI	22497	.	A	G	1486.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580;DP=154;Dels=0.00;FS=3.765;HaplotypeScore=11.4270;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=2.098;QD=9.65;ReadPosRankSum=-0.221;SB=-6.990e+02	GT:AD:DP:GQ:PL	0/1:71,82:154:99:1516,0,1241
chrVI	22525	.	G	C	960.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;DP=135;Dels=0.00;FS=2.193;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=58.62;MQ0=0;MQRankSum=0.126;QD=7.11;ReadPosRankSum=-0.511;SB=-4.460e+02	GT:AD:DP:GQ:PL	0/1:75,60:135:99:990,0,1376
chrVI	22632	.	T	C	1374.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;DP=164;Dels=0.00;FS=4.720;HaplotypeScore=12.7895;MLEAC=1;MLEAF=0.500;MQ=59.18;MQ0=0;MQRankSum=-0.972;QD=8.38;ReadPosRankSum=1.316;SB=-6.470e+02	GT:AD:DP:GQ:PL	0/1:74,90:164:99:1404,0,977
chrVI	22715	.	T	G	819.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;DP=136;Dels=0.00;FS=1.386;HaplotypeScore=21.4158;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=0;MQRankSum=1.131;QD=6.02;ReadPosRankSum=-0.466;SB=-4.260e+02	GT:AD:DP:GQ:PL	0/1:75,58:136:99:849,0,1138
chrVI	22792	.	T	C	1239.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.027;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.1665;MLEAC=1;MLEAF=0.500;MQ=58.79;MQ0=0;MQRankSum=-1.911;QD=8.05;ReadPosRankSum=1.812;SB=-5.680e+02	GT:AD:DP:GQ:PL	0/1:75,78:154:99:1269,0,1216
chrVI	22833	.	T	G	2733	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.19;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2766,312,0
chrVI	22905	.	C	T	851.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.717;DP=119;Dels=0.00;FS=9.049;HaplotypeScore=11.2475;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=0;MQRankSum=-1.492;QD=7.15;ReadPosRankSum=1.752;SB=-1.900e+02	GT:AD:DP:GQ:PL	0/1:62,55:119:99:881,0,1057
chrVI	22923	.	A	G	897.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.877;DP=114;Dels=0.00;FS=11.034;HaplotypeScore=5.7259;MLEAC=1;MLEAF=0.500;MQ=55.22;MQ0=0;MQRankSum=-2.979;QD=7.87;ReadPosRankSum=0.530;SB=-2.550e+02	GT:AD:DP:GQ:PL	0/1:56,58:114:99:927,0,953
chrVI	22927	.	T	C	890.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.902;DP=119;Dels=0.00;FS=10.771;HaplotypeScore=7.3033;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=-1.497;QD=7.48;ReadPosRankSum=-0.093;SB=-3.410e+02	GT:AD:DP:GQ:PL	0/1:57,62:119:99:920,0,895
chrVI	23085	.	A	G	1216.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.575;DP=167;Dels=0.00;FS=1.320;HaplotypeScore=11.4737;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=0.446;QD=7.28;ReadPosRankSum=1.588;SB=-4.390e+02	GT:AD:DP:GQ:PL	0/1:94,73:167:99:1246,0,1640
chrVI	23305	.	T	G	1311.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.123;DP=182;Dels=0.01;FS=1.823;HaplotypeScore=6.0036;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=-1.522;QD=7.20;ReadPosRankSum=-0.416;SB=-7.590e+02	GT:AD:DP:GQ:PL	0/1:96,85:181:99:1341,0,1746
chrVI	23330	.	A	G	1228.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.656;DP=173;Dels=0.00;FS=0.590;HaplotypeScore=11.1565;MLEAC=1;MLEAF=0.500;MQ=57.78;MQ0=0;MQRankSum=-1.938;QD=7.10;ReadPosRankSum=0.329;SB=-5.400e+02	GT:AD:DP:GQ:PL	0/1:99,74:173:99:1258,0,1929
chrVI	23356	.	G	T	1204.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.331;DP=201;Dels=0.00;FS=1.123;HaplotypeScore=8.6311;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=-1.795;QD=5.99;ReadPosRankSum=1.205;SB=-6.360e+02	GT:AD:DP:GQ:PL	0/1:119,82:201:99:1234,0,1899
chrVI	23390	.	T	C	1192.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.408;DP=196;Dels=0.01;FS=2.492;HaplotypeScore=17.5476;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=-1.129;QD=6.08;ReadPosRankSum=-0.734;SB=-7.330e+02	GT:AD:DP:GQ:PL	0/1:111,84:195:99:1222,0,1938
chrVI	23608	.	G	A	412.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;DP=115;Dels=0.00;FS=5.096;HaplotypeScore=8.7190;MLEAC=1;MLEAF=0.500;MQ=56.37;MQ0=0;MQRankSum=-1.451;QD=3.58;ReadPosRankSum=-0.970;SB=-2.210e+02	GT:AD:DP:GQ:PL	0/1:67,46:115:99:442,0,1052
chrVI	23620	.	C	T	2018	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=16.68;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2051,228,0
chrVI	23677	.	T	C	751.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.6041;MLEAC=1;MLEAF=0.500;MQ=58.29;MQ0=0;MQRankSum=1.671;QD=5.29;ReadPosRankSum=1.129;SB=-3.850e+02	GT:AD:DP:GQ:PL	0/1:79,63:142:99:781,0,1374
chrVI	23746	.	A	G	1417.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.098;DP=191;Dels=0.00;FS=6.057;HaplotypeScore=4.9735;MLEAC=1;MLEAF=0.500;MQ=59.15;MQ0=0;MQRankSum=0.520;QD=7.42;ReadPosRankSum=-1.649;SB=-9.000e+02	GT:AD:DP:GQ:PL	0/1:94,97:191:99:1447,0,1529
chrVI	24134	.	T	C	1101.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.028;DP=169;Dels=0.00;FS=6.718;HaplotypeScore=15.2408;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.279;QD=6.51;ReadPosRankSum=-0.533;SB=-6.450e+02	GT:AD:DP:GQ:PL	0/1:81,87:169:99:1131,0,1227
chrVI	24214	.	G	T	2868	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.0747;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.51;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:2901,321,0
chrVI	24548	.	G	A	921.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;DP=124;Dels=0.00;FS=4.340;HaplotypeScore=13.8248;MLEAC=1;MLEAF=0.500;MQ=58.69;MQ0=0;MQRankSum=-1.039;QD=7.43;ReadPosRankSum=0.764;SB=-4.840e+02	GT:AD:DP:GQ:PL	0/1:66,58:124:99:951,0,1039
chrVI	24574	.	C	T	542.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;DP=108;Dels=0.00;FS=4.865;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=-0.340;QD=5.02;ReadPosRankSum=-0.232;SB=-2.230e+02	GT:AD:DP:GQ:PL	0/1:64,44:108:99:572,0,1066
chrVI	24577	.	T	C	563.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.257;DP=113;Dels=0.00;FS=5.973;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=57.51;MQ0=0;MQRankSum=-2.059;QD=4.98;ReadPosRankSum=-0.684;SB=-2.960e+02	GT:AD:DP:GQ:PL	0/1:66,47:113:99:593,0,1189
chrVI	24778	.	T	C	895.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.541;DP=173;Dels=0.00;FS=0.575;HaplotypeScore=19.6867;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-0.165;QD=5.17;ReadPosRankSum=1.120;SB=-5.640e+02	GT:AD:DP:GQ:PL	0/1:103,68:173:99:925,0,1424
chrVI	24900	.	A	G	981.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;DP=140;Dels=0.00;FS=6.367;HaplotypeScore=15.9385;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=1.652;QD=7.01;ReadPosRankSum=0.102;SB=-5.210e+02	GT:AD:DP:GQ:PL	0/1:69,69:140:99:1011,0,1252
chrVI	25075	.	G	C	535.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2187;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=-0.193;QD=5.75;ReadPosRankSum=-0.996;SB=-3.870e+02	GT:AD:DP:GQ:PL	0/1:52,40:93:99:565,0,894
chrVI	25192	.	G	A	610.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;DP=106;Dels=0.00;FS=3.135;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=0;MQRankSum=-1.578;QD=5.75;ReadPosRankSum=-2.072;SB=-2.850e+02	GT:AD:DP:GQ:PL	0/1:57,49:106:99:640,0,868
chrVI	25195	.	C	T	526.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;DP=110;Dels=0.00;FS=7.399;HaplotypeScore=1.6553;MLEAC=1;MLEAF=0.500;MQ=56.29;MQ0=0;MQRankSum=-1.121;QD=4.78;ReadPosRankSum=-1.822;SB=-2.790e+02	GT:AD:DP:GQ:PL	0/1:59,51:110:99:556,0,922
chrVI	25230	.	A	G	714.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;DP=131;Dels=0.00;FS=12.564;HaplotypeScore=11.2902;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=-1.604;QD=5.45;ReadPosRankSum=0.920;SB=-4.440e+02	GT:AD:DP:GQ:PL	0/1:73,58:131:99:744,0,1020
chrVI	25258	.	T	C	683.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.913;DP=136;Dels=0.00;FS=3.120;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=57.22;MQ0=0;MQRankSum=-2.212;QD=5.02;ReadPosRankSum=0.108;SB=-4.520e+02	GT:AD:DP:GQ:PL	0/1:72,63:136:99:713,0,1240
chrVI	25276	.	C	A	811.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.211;DP=147;Dels=0.01;FS=0.617;HaplotypeScore=9.0311;MLEAC=1;MLEAF=0.500;MQ=57.60;MQ0=0;MQRankSum=-0.247;QD=5.52;ReadPosRankSum=0.420;SB=-6.370e+02	GT:AD:DP:GQ:PL	0/1:79,67:146:99:841,0,1325
chrVI	25531	.	T	C	783.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=55.41;MQ0=0;MQRankSum=-1.928;QD=7.83;ReadPosRankSum=0.755;SB=-2.530e+02	GT:AD:DP:GQ:PL	0/1:52,48:100:99:813,0,854
chrVI	25547	.	T	G	817.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;DP=102;Dels=0.00;FS=1.821;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=54.27;MQ0=0;MQRankSum=-3.583;QD=8.01;ReadPosRankSum=-1.018;SB=-3.510e+02	GT:AD:DP:GQ:PL	0/1:49,53:102:99:847,0,929
chrVI	25551	.	C	T	721.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=-3.328;QD=6.38;ReadPosRankSum=-1.078;SB=-2.450e+02	GT:AD:DP:GQ:PL	0/1:54,59:113:99:751,0,970
chrVI	25689	.	T	C	1009.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.787;DP=160;Dels=0.00;FS=1.265;HaplotypeScore=7.3318;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=-0.216;QD=6.31;ReadPosRankSum=-2.626;SB=-4.750e+02	GT:AD:DP:GQ:PL	0/1:85,74:160:99:1039,0,1633
chrVI	25771	.	G	A	1577.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.548;DP=184;Dels=0.01;FS=0.000;HaplotypeScore=23.7550;MLEAC=1;MLEAF=0.500;MQ=56.39;MQ0=0;MQRankSum=-0.405;QD=8.57;ReadPosRankSum=-1.350;SB=-8.640e+02	GT:AD:DP:GQ:PL	0/1:84,98:182:99:1607,0,1425
chrVI	25858	.	G	A	1944.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.901;DP=230;Dels=0.00;FS=5.812;HaplotypeScore=15.1369;MLEAC=1;MLEAF=0.500;MQ=57.58;MQ0=0;MQRankSum=-1.790;QD=8.45;ReadPosRankSum=-0.610;SB=-6.530e+02	GT:AD:DP:GQ:PL	0/1:111,118:230:99:1974,0,2027
chrVI	25898	.	A	G	4822.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=225;Dels=0.00;FS=5.177;HaplotypeScore=13.8295;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=1.191;QD=21.43;ReadPosRankSum=1.717;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:1,223:224:99:4822,537,0
chrVI	25946	.	C	T	1177.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.759;DP=225;Dels=0.00;FS=2.635;HaplotypeScore=13.2862;MLEAC=1;MLEAF=0.500;MQ=48.22;MQ0=0;MQRankSum=-9.847;QD=5.23;ReadPosRankSum=-0.676;SB=-6.020e+02	GT:AD:DP:GQ:PL	0/1:104,121:225:99:1207,0,1867
chrVI	25962	.	G	A	977.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;DP=214;Dels=0.00;FS=5.230;HaplotypeScore=4.1336;MLEAC=1;MLEAF=0.500;MQ=46.57;MQ0=0;MQRankSum=-11.385;QD=4.57;ReadPosRankSum=2.004;SB=-6.130e+02	GT:AD:DP:GQ:PL	0/1:100,114:214:99:1007,0,1832
chrVI	25963	.	A	G	980.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.521;DP=213;Dels=0.00;FS=4.305;HaplotypeScore=4.1336;MLEAC=1;MLEAF=0.500;MQ=46.50;MQ0=0;MQRankSum=-11.064;QD=4.60;ReadPosRankSum=2.264;SB=-6.040e+02	GT:AD:DP:GQ:PL	0/1:100,113:213:99:1010,0,2024
chrVI	25966	.	A	T	1066.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.281;DP=224;Dels=0.00;FS=9.423;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=46.73;MQ0=0;MQRankSum=-11.635;QD=4.76;ReadPosRankSum=2.087;SB=-5.600e+02	GT:AD:DP:GQ:PL	0/1:105,119:224:99:1096,0,1801
chrVI	25976	.	A	T	923.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.297;DP=236;Dels=0.00;FS=8.006;HaplotypeScore=10.4558;MLEAC=1;MLEAF=0.500;MQ=47.52;MQ0=0;MQRankSum=-10.881;QD=3.91;ReadPosRankSum=2.207;SB=-6.700e+02	GT:AD:DP:GQ:PL	0/1:114,122:236:99:953,0,2036
chrVI	26029	.	A	G	1057.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.215;DP=207;Dels=0.00;FS=2.522;HaplotypeScore=8.2480;MLEAC=1;MLEAF=0.500;MQ=55.88;MQ0=0;MQRankSum=-4.129;QD=5.11;ReadPosRankSum=0.285;SB=-5.980e+02	GT:AD:DP:GQ:PL	0/1:112,94:207:99:1087,0,2121
chrVI	26058	.	G	A	1414.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;DP=208;Dels=0.00;FS=5.757;HaplotypeScore=12.1364;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=1.189;QD=6.80;ReadPosRankSum=0.928;SB=-8.990e+02	GT:AD:DP:GQ:PL	0/1:108,100:208:99:1444,0,1969
chrVI	26111	.	C	G	1417.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;DP=190;Dels=0.00;FS=2.668;HaplotypeScore=13.8375;MLEAC=1;MLEAF=0.500;MQ=56.80;MQ0=0;MQRankSum=-2.076;QD=7.46;ReadPosRankSum=0.081;SB=-5.710e+02	GT:AD:DP:GQ:PL	0/1:97,92:190:99:1447,0,1550
chrVI	26127	.	C	T	1357.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;DP=200;Dels=0.00;FS=4.531;HaplotypeScore=5.8497;MLEAC=1;MLEAF=0.500;MQ=56.72;MQ0=0;MQRankSum=-0.159;QD=6.79;ReadPosRankSum=-1.433;SB=-5.010e+02	GT:AD:DP:GQ:PL	0/1:99,98:200:99:1387,0,1505
chrVI	26156	.	G	T	1576.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.986;DP=197;Dels=0.00;FS=2.850;HaplotypeScore=92.9155;MLEAC=1;MLEAF=0.500;MQ=57.80;MQ0=0;MQRankSum=-0.601;QD=8.00;ReadPosRankSum=-0.700;SB=-5.250e+02	GT:AD:DP:GQ:PL	0/1:93,102:197:99:1606,0,1331
chrVI	26216	.	T	C	1621.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;DP=202;Dels=0.00;FS=19.646;HaplotypeScore=14.2832;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=0;MQRankSum=-2.262;QD=8.02;ReadPosRankSum=0.010;SB=-5.050e+02	GT:AD:DP:GQ:PL	0/1:97,105:202:99:1651,0,1690
chrVI	26443	.	C	G	1061.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=1;MLEAF=0.500;MQ=59.54;MQ0=0;MQRankSum=-1.798;QD=6.98;ReadPosRankSum=-0.778;SB=-5.130e+02	GT:AD:DP:GQ:PL	0/1:87,64:152:99:1091,0,1629
chrVI	26594	.	A	T	2324	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.7102;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.75;SB=-1.432e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2357,261,0
chrVI	26682	.	C	T	962.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.982;DP=121;Dels=0.00;FS=0.681;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=0;MQRankSum=-0.157;QD=7.95;ReadPosRankSum=-0.415;SB=-5.630e+02	GT:AD:DP:GQ:PL	0/1:59,61:121:99:992,0,739
chrVI	26701	.	A	C	902.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=0.987;QD=7.05;ReadPosRankSum=0.485;SB=-5.190e+02	GT:AD:DP:GQ:PL	0/1:66,61:128:99:932,0,888
chrVI	26765	.	A	C	1000.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=59.59;MQ0=0;MQRankSum=0.328;QD=5.92;ReadPosRankSum=0.926;SB=-4.790e+02	GT:AD:DP:GQ:PL	0/1:94,75:169:99:1030,0,1457
chrVI	27077	.	C	T	973.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.055;DP=138;Dels=0.00;FS=2.243;HaplotypeScore=8.8461;MLEAC=1;MLEAF=0.500;MQ=58.17;MQ0=0;MQRankSum=1.010;QD=7.05;ReadPosRankSum=1.955;SB=-4.600e+02	GT:AD:DP:GQ:PL	0/1:80,56:138:99:1003,0,1389
chrVI	27102	.	G	T	693.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;DP=124;Dels=0.00;FS=1.462;HaplotypeScore=9.1874;MLEAC=1;MLEAF=0.500;MQ=58.40;MQ0=0;MQRankSum=-0.942;QD=5.59;ReadPosRankSum=0.408;SB=-4.520e+02	GT:AD:DP:GQ:PL	0/1:72,51:124:99:723,0,1149
chrVI	27338	.	G	C	1200.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;DP=162;Dels=0.00;FS=2.758;HaplotypeScore=17.5562;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=-0.804;QD=7.41;ReadPosRankSum=-0.398;SB=-6.760e+02	GT:AD:DP:GQ:PL	0/1:84,77:162:99:1230,0,1404
chrVI	27371	.	C	T	1174.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=1;MLEAF=0.500;MQ=57.48;MQ0=0;MQRankSum=-0.002;QD=7.07;ReadPosRankSum=0.047;SB=-7.800e+02	GT:AD:DP:GQ:PL	0/1:79,86:166:99:1204,0,1481
chrVI	27376	.	A	G	1105.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DP=174;Dels=0.00;FS=1.189;HaplotypeScore=18.3426;MLEAC=1;MLEAF=0.500;MQ=57.18;MQ0=0;MQRankSum=-0.354;QD=6.35;ReadPosRankSum=1.810;SB=-8.400e+02	GT:AD:DP:GQ:PL	0/1:89,82:174:99:1135,0,1314
chrVI	27436	.	T	A	3778.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=15.5762;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.666;QD=19.08;ReadPosRankSum=1.714;SB=-1.992e+03	GT:AD:DP:GQ:PL	1/1:1,197:198:99:3778,414,0
chrVI	27484	.	C	T	953.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=130;Dels=0.00;FS=2.250;HaplotypeScore=8.1009;MLEAC=1;MLEAF=0.500;MQ=57.90;MQ0=0;MQRankSum=1.104;QD=7.33;ReadPosRankSum=0.652;SB=-5.660e+02	GT:AD:DP:GQ:PL	0/1:67,63:130:99:983,0,1092
chrVI	27574	.	T	C	686	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=5.67;SB=-1.512e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:84:719,84,0
chrVI	27592	.	A	G	998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=3.002;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;MQRankSum=0.490;QD=8.46;ReadPosRankSum=2.366;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:2,116:118:99:1031,114,0
chrVI	27660	.	A	G	666.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;DP=104;Dels=0.00;FS=20.436;HaplotypeScore=8.8446;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=0.254;QD=6.40;ReadPosRankSum=0.390;SB=-9.901e+01	GT:AD:DP:GQ:PL	0/1:51,53:104:99:696,0,684
chrVI	27763	.	T	C	821.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.918;DP=155;Dels=0.00;FS=0.647;HaplotypeScore=10.2879;MLEAC=1;MLEAF=0.500;MQ=57.27;MQ0=0;MQRankSum=1.026;QD=5.30;ReadPosRankSum=-0.017;SB=-3.610e+02	GT:AD:DP:GQ:PL	0/1:94,60:155:99:851,0,1556
chrVI	27878	.	T	C	672.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;DP=120;Dels=0.00;FS=1.485;HaplotypeScore=8.8027;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=0;MQRankSum=0.295;QD=5.60;ReadPosRankSum=0.721;SB=-4.210e+02	GT:AD:DP:GQ:PL	0/1:70,50:120:99:702,0,1196
chrVI	27960	.	A	G	647.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;DP=104;Dels=0.01;FS=5.006;HaplotypeScore=49.6309;MLEAC=1;MLEAF=0.500;MQ=50.51;MQ0=0;MQRankSum=-0.907;QD=6.22;ReadPosRankSum=1.162;SB=-3.740e+02	GT:AD:DP:GQ:PL	0/1:51,50:103:99:677,0,796
chrVI	28033	.	T	G	688.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;DP=113;Dels=0.00;FS=4.337;HaplotypeScore=9.8705;MLEAC=1;MLEAF=0.500;MQ=57.53;MQ0=0;MQRankSum=-0.298;QD=6.09;ReadPosRankSum=-0.546;SB=-1.420e+02	GT:AD:DP:GQ:PL	0/1:63,50:113:99:718,0,1174
chrVI	28051	.	T	C	748.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;DP=103;Dels=0.00;FS=0.798;HaplotypeScore=5.5460;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-1.099;QD=7.26;ReadPosRankSum=-1.866;SB=-3.290e+02	GT:AD:DP:GQ:PL	0/1:54,49:103:99:778,0,1014
chrVI	28146	.	T	C	1229.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840;DP=168;Dels=0.00;FS=8.139;HaplotypeScore=9.2757;MLEAC=1;MLEAF=0.500;MQ=59.28;MQ0=0;MQRankSum=0.691;QD=7.32;ReadPosRankSum=-0.931;SB=-4.370e+02	GT:AD:DP:GQ:PL	0/1:95,73:168:99:1259,0,1554
chrVI	28283	.	T	C	824.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=13.5567;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-0.742;QD=6.81;ReadPosRankSum=1.795;SB=-5.450e+02	GT:AD:DP:GQ:PL	0/1:62,57:121:99:854,0,904
chrVI	28318	.	A	G	2828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=142;Dels=0.00;FS=3.363;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.553;QD=19.92;ReadPosRankSum=1.708;SB=-1.606e+03	GT:AD:DP:GQ:PL	1/1:1,140:142:99:2861,321,0
chrVI	28504	.	G	T	1477.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DP=173;Dels=0.00;FS=2.732;HaplotypeScore=11.7885;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-0.189;QD=8.54;ReadPosRankSum=-2.065;SB=-7.860e+02	GT:AD:DP:GQ:PL	0/1:78,94:173:99:1507,0,1355
chrVI	28542	.	T	C	1292.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.989;DP=167;Dels=0.00;FS=2.819;HaplotypeScore=11.3255;MLEAC=1;MLEAF=0.500;MQ=57.90;MQ0=0;MQRankSum=0.775;QD=7.74;ReadPosRankSum=-1.955;SB=-4.940e+02	GT:AD:DP:GQ:PL	0/1:89,78:167:99:1322,0,1595
chrVI	28662	.	T	A	2733	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.80;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2766,300,0
chrVI	28911	.	T	C	619.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.192;DP=145;Dels=0.00;FS=0.626;HaplotypeScore=7.3263;MLEAC=1;MLEAF=0.500;MQ=54.02;MQ0=0;MQRankSum=-1.913;QD=4.27;ReadPosRankSum=-1.486;SB=-4.260e+02	GT:AD:DP:GQ:PL	0/1:75,70:145:99:649,0,1505
chrVI	28916	.	T	C	2648	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.77;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,148:149:99:2681,300,0
chrVI	29056	.	A	G	840.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;DP=98;Dels=0.00;FS=3.792;HaplotypeScore=6.0754;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=0;MQRankSum=0.437;QD=8.57;ReadPosRankSum=0.004;SB=-4.540e+02	GT:AD:DP:GQ:PL	0/1:47,50:98:99:870,0,579
chrVI	29440	.	A	G	1220.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.280;DP=133;Dels=0.00;FS=0.671;HaplotypeScore=5.2730;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-0.258;QD=9.17;ReadPosRankSum=-0.355;SB=-5.620e+02	GT:AD:DP:GQ:PL	0/1:55,77:133:99:1250,0,966
chrVI	29449	.	G	A	1142.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.552;DP=131;Dels=0.00;FS=3.220;HaplotypeScore=8.6223;MLEAC=1;MLEAF=0.500;MQ=55.63;MQ0=0;MQRankSum=-1.608;QD=8.72;ReadPosRankSum=1.331;SB=-5.550e+02	GT:AD:DP:GQ:PL	0/1:61,70:131:99:1172,0,950
chrVI	29452	.	G	A	1088.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.097;DP=132;Dels=0.00;FS=5.436;HaplotypeScore=6.2612;MLEAC=1;MLEAF=0.500;MQ=54.72;MQ0=0;MQRankSum=-0.420;QD=8.24;ReadPosRankSum=0.397;SB=-5.350e+02	GT:AD:DP:GQ:PL	0/1:58,74:132:99:1118,0,862
chrVI	29620	.	G	A	1167.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.478;DP=133;Dels=0.00;FS=1.381;HaplotypeScore=8.8244;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=-0.864;QD=8.77;ReadPosRankSum=-0.602;SB=-5.810e+02	GT:AD:DP:GQ:PL	0/1:62,69:133:99:1197,0,920
chrVI	29691	.	G	T	3574.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.79;SB=-1.611e+03	GT:AD:DP:GQ:PL	1/1:0,163:164:99:3574,393,0
chrVI	29732	.	A	G	1066.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.239;DP=152;Dels=0.00;FS=6.240;HaplotypeScore=7.9210;MLEAC=1;MLEAF=0.500;MQ=52.18;MQ0=0;MQRankSum=-0.013;QD=7.01;ReadPosRankSum=1.694;SB=-5.790e+02	GT:AD:DP:GQ:PL	0/1:80,71:152:99:1096,0,1357
chrVI	29751	.	T	A	1286.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;DP=176;Dels=0.00;FS=6.858;HaplotypeScore=8.8968;MLEAC=1;MLEAF=0.500;MQ=50.75;MQ0=0;MQRankSum=1.798;QD=7.31;ReadPosRankSum=1.091;SB=-7.070e+02	GT:AD:DP:GQ:PL	0/1:90,86:176:99:1316,0,1329
chrVI	29752	.	T	C	1268.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.344;DP=176;Dels=0.00;FS=6.858;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=50.90;MQ0=0;MQRankSum=0.724;QD=7.20;ReadPosRankSum=-0.942;SB=-4.880e+02	GT:AD:DP:GQ:PL	0/1:86,89:176:99:1298,0,1345
chrVI	29838	.	A	T	467.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.603;DP=136;Dels=0.02;FS=0.710;HaplotypeScore=32.3737;MLEAC=1;MLEAF=0.500;MQ=50.84;MQ0=0;MQRankSum=1.332;QD=3.43;ReadPosRankSum=-0.779;SB=-3.100e+02	GT:AD:DP:GQ:PL	0/1:73,60:133:99:497,0,1073
chrVI	29858	.	G	T	1061.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;DP=134;Dels=0.00;FS=17.346;HaplotypeScore=11.8144;MLEAC=1;MLEAF=0.500;MQ=51.92;MQ0=0;MQRankSum=-0.643;QD=7.92;ReadPosRankSum=1.435;SB=-5.960e+02	GT:AD:DP:GQ:PL	0/1:66,68:134:99:1091,0,882
chrVI	29907	.	G	T	971.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.942;DP=151;Dels=0.00;FS=0.624;HaplotypeScore=10.4220;MLEAC=1;MLEAF=0.500;MQ=52.38;MQ0=0;MQRankSum=1.923;QD=6.43;ReadPosRankSum=-0.294;SB=-4.720e+02	GT:AD:DP:GQ:PL	0/1:84,67:151:99:1001,0,1503
chrVI	29945	.	A	G	1077.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=129;Dels=0.00;FS=4.555;HaplotypeScore=9.6087;MLEAC=1;MLEAF=0.500;MQ=53.44;MQ0=0;MQRankSum=1.940;QD=8.35;ReadPosRankSum=1.420;SB=-3.530e+02	GT:AD:DP:GQ:PL	0/1:65,63:129:99:1107,0,868
chrVI	30085	.	T	C	662	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374;DP=55;Dels=0.00;FS=24.581;HaplotypeScore=5.9754;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;MQRankSum=-4.240;QD=12.04;ReadPosRankSum=3.012;SB=3.00	GT:AD:DP:GQ:PL	1/1:23,32:55:78:695,78,0
chrVI	30127	.	A	G	519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.236;DP=51;Dels=0.00;FS=40.888;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;MQRankSum=2.183;QD=10.18;ReadPosRankSum=3.030;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:8,42:51:63:552,63,0
chrVI	30249	.	A	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.41;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1625,177,0
chrVI	30312	.	T	C	1817	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0175;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.65;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1850,213,0
chrVI	30348	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=20.09;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1399,162,0
chrVI	30379	.	C	T	806	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=17.91;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:839,93,0
chrVI	30393	.	G	T	716	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=17.05;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:749,84,0
chrVI	30415	.	A	G	905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=54;Dels=0.00;FS=3.625;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=0.490;QD=16.76;ReadPosRankSum=1.667;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:938,108,0
chrVI	30510	.	G	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.74;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1062,120,0
chrVI	30544	.	A	T	1024	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=16.79;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1057,120,0
chrVI	30616	.	T	C	1909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=5.815;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.084;QD=18.53;ReadPosRankSum=1.698;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1942,222,0
chrVI	30834	.	T	A	854	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=16.42;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:887,99,0
chrVI	30874	.	A	G	844	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=47;Dels=0.00;FS=6.155;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.500;QD=17.96;ReadPosRankSum=2.676;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:3,44:47:99:877,99,0
chrVI	31029	.	A	T	752	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-1.582;QD=16.35;ReadPosRankSum=1.657;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:87:785,87,0
chrVI	31063	.	T	C	896	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=16.00;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:929,105,0
chrVI	31102	.	A	G	655	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=15.60;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:688,78,0
chrVI	31108	.	A	G	601	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=15.41;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:634,69,0
chrVI	31117	.	T	A	486	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=13.14;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:519,60,0
chrVI	31304	.	C	T	593	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=15.21;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:626,72,0
chrVI	31360	.	G	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.96;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1206,135,0
chrVI	31946	.	A	C	1789	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.33;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1822,204,0
chrVI	32018	.	T	A	1244	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.85;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1277,144,0
chrVI	32084	.	C	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.94;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1733,192,0
chrVI	32162	.	G	A	1053	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.65;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1086,117,0
chrVI	32387	.	T	A	1304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=3.8791;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=1.312;QD=19.76;ReadPosRankSum=0.420;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1337,127,0
chrVI	32539	.	T	C	1694	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=20.91;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1727,192,0
chrVI	32698	.	G	A	1598	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=66.0250;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=21.89;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1631,180,0
chrVI	32799	.	G	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.40;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1422,156,0
chrVI	32882	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=21.17;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1536,168,0
chrVI	32886	.	C	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=20.14;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1483,162,0
chrVI	32918	.	G	A	1384	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=18.45;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1417,159,0
chrVI	32931	.	T	G	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.715;DP=90;Dels=0.00;FS=20.418;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.15;MQ0=0;MQRankSum=-2.022;QD=15.27;ReadPosRankSum=3.733;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:5,84:90:99:1407,162,0
chrVI	32955	.	A	C	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=0.128;QD=14.52;ReadPosRankSum=1.696;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1412,159,0
chrVI	32964	.	C	T	1554	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=15.86;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1587,177,0
chrVI	33008	.	A	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=15.90;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1893,210,0
chrVI	33201	.	T	C	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.994;QD=18.93;ReadPosRankSum=1.619;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1188,135,0
chrVI	33240	.	T	C	1100	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.094;QD=20.00;ReadPosRankSum=1.669;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1133,129,0
chrVI	33246	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.68;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1247,138,0
chrVI	33330	.	A	C	2006	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.67;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2039,225,0
chrVI	33362	.	A	G	2095	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.3897;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.40;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2128,240,0
chrVI	34015	.	G	A	2119	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.62;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2152,237,0
chrVI	34508	.	G	A	1027	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.84;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1060,117,0
chrVI	34667	.	T	A	1130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.757;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.672;QD=19.82;ReadPosRankSum=1.672;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1163,132,0
chrVI	34741	.	T	G	1009	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.18;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1042,120,0
chrVI	34967	.	T	C	1242	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.05;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1275,141,0
chrVI	35310	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=15.04;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1101,120,0
chrVI	35313	.	C	T	970	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=14.48;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1003,108,0
chrVI	35514	.	A	G	1984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.544;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.4150;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=1.318;QD=21.11;ReadPosRankSum=1.544;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:1,91:94:99:2017,222,0
chrVI	35789	.	A	G	675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=48;Dels=0.00;FS=2.943;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-2.293;QD=14.06;ReadPosRankSum=2.345;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:2,45:48:81:708,81,0
chrVI	35905	.	A	C	1890	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=110;Dels=0.00;FS=2.802;HaplotypeScore=7.0958;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.490;QD=17.18;ReadPosRankSum=2.404;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:2,106:110:99:1923,219,0
chrVI	35915	.	C	T	1893	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.69;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:1926,210,0
chrVI	35940	.	A	T	1897	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.09;SB=-1.393e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1930,213,0
chrVI	36075	.	A	G	1308	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=68;Dels=0.00;FS=9.166;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.143;QD=19.24;ReadPosRankSum=2.377;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1341,150,0
chrVI	36198	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.88;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1200,132,0
chrVI	36257	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.53;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1039,117,0
chrVI	36358	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.09;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1255,141,0
chrVI	36485	.	G	A	1120	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.78;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1153,132,0
chrVI	36568	.	G	A	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.626;QD=20.58;ReadPosRankSum=-1.347;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1535,149,0
chrVI	36925	.	G	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.8642;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.58;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1947,216,0
chrVI	37497	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1582,177,0
chrVI	37537	.	A	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.38;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1555,174,0
chrVI	37852	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1387,153,0
chrVI	37951	.	A	T	2026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5644;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.407;QD=20.89;ReadPosRankSum=1.660;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,95:97:99:2059,225,0
chrVI	38032	.	G	A	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.878;QD=19.97;ReadPosRankSum=1.637;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1511,149,0
chrVI	38255	.	G	A	1410	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1443,159,0
chrVI	38909	.	A	G	1428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=2.954;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-1.517;QD=19.04;ReadPosRankSum=2.317;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:1461,165,0
chrVI	38918	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.75;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1458,165,0
chrVI	39374	.	C	T	790	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.56;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:823,90,0
chrVI	39488	.	G	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1509,165,0
chrVI	40189	.	A	G	4366.01	PASS	AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=13.7756;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.40;SB=-2.264e+03	GT:AD:DP:GQ:PL	1/1:0,212:213:99:4366,486,0
chrVI	40232	.	A	C	6036.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.157;DP=294;Dels=0.00;FS=6.461;HaplotypeScore=10.9584;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.531;QD=20.53;ReadPosRankSum=2.408;SB=-3.276e+03	GT:AD:DP:GQ:PL	1/1:2,292:294:99:6036,669,0
chrVI	40564	.	C	T	2661	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.4220;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.28;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2694,303,0
chrVI	40603	.	T	C	2045	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.0958;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=17.78;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2078,228,0
chrVI	40630	.	T	C	1727	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.99;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1760,204,0
chrVI	40771	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.99;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1364,150,0
chrVI	40841	.	G	A	2230	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.24;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2263,249,0
chrVI	41032	.	G	A	1118	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.36;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1151,123,0
chrVI	41221	.	G	C	1748	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.64;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1781,201,0
chrVI	41296	.	C	T	1469	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.95;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1502,165,0
chrVI	41461	.	A	C	1228	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.80;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1261,147,0
chrVI	41500	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=18.49;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1272,141,0
chrVI	41563	.	G	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.37;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1172,129,0
chrVI	41688	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.50;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1242,135,0
chrVI	41722	.	C	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.12;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1471,162,0
chrVI	41791	.	A	G	935	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.33;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:968,108,0
chrVI	41842	.	T	C	942	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.04;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:975,111,0
chrVI	41881	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.02;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1254,141,0
chrVI	41899	.	T	G	1113	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=18.86;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1146,132,0
chrVI	41939	.	C	T	1349	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.84;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1382,150,0
chrVI	42070	.	C	G	1470	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.30;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1503,174,0
chrVI	42167	.	G	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1584,171,0
chrVI	42240	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.61;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1308,147,0
chrVI	42346	.	A	G	1395	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.7051;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.37;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1428,165,0
chrVI	42349	.	T	C	1442	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7051;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.75;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1475,162,0
chrVI	42633	.	G	A	2090	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.55;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2123,237,0
chrVI	42684	.	T	C	2584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.242;QD=22.47;ReadPosRankSum=1.640;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,112:115:99:2617,297,0
chrVI	42772	.	T	A	1432	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.48;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1465,162,0
chrVI	42955	.	A	G	1568	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.63;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1601,177,0
chrVI	42970	.	T	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=17.07;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1450,165,0
chrVI	42992	.	G	A	1612	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=17.91;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1645,177,0
chrVI	43072	.	A	G	1913	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.787;QD=21.26;ReadPosRankSum=1.653;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,87:90:99:1946,219,0
chrVI	43129	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=85;Dels=0.00;FS=2.973;HaplotypeScore=6.7642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.367;QD=21.81;ReadPosRankSum=2.333;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:2,82:85:99:1887,210,0
chrVI	43169	.	C	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.44;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2030,222,0
chrVI	43198	.	A	G	1786	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0431;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.90;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1819,204,0
chrVI	43492	.	G	A	2485	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.59;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2518,276,0
chrVI	43673	.	G	A	852	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.52;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:885,96,0
chrVI	43907	.	G	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1345,150,0
chrVI	44192	.	A	G	1657	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.62;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1690,192,0
chrVI	44552	.	A	G	2955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=141;Dels=0.00;FS=4.137;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.460;QD=20.96;ReadPosRankSum=1.707;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:1,139:141:99:2988,336,0
chrVI	44748	.	T	C	1984	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=17.25;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2017,228,0
chrVI	44754	.	C	T	1873	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.72;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,110:112:99:1906,204,0
chrVI	44763	.	A	G	1833	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=16.37;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:1866,213,0
chrVI	44772	.	G	A	1719	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=16.07;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1752,189,0
chrVI	45217	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.42;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1046,117,0
chrVI	45764	.	A	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.67;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1687,192,0
chrVI	45896	.	C	A	1432	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=13.90;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1465,159,0
chrVI	45929	.	T	C	1044	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DP=89;Dels=0.00;FS=5.890;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=0.057;QD=11.73;ReadPosRankSum=2.808;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:3,86:89:99:1077,120,0
chrVI	45941	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=12.70;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1278,144,0
chrVI	46010	.	T	C	2261	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.23;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2294,264,0
chrVI	46185	.	T	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.94;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1567,180,0
chrVI	46215	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3639;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.99;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1685,186,0
chrVI	46302	.	C	T	2212	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.6030;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.87;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2245,246,0
chrVI	46380	.	A	G	1682	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.48;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1715,195,0
chrVI	46666	.	G	T	1852	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.91;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1885,204,0
chrVI	46872	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.14;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1212,132,0
chrVI	47034	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1216,135,0
chrVI	47137	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.14;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1284,144,0
chrVI	47833	.	T	C	2094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.018;QD=22.04;ReadPosRankSum=1.659;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2127,240,0
chrVI	48016	.	T	A	717	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=10.70;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:84:750,84,0
chrVI	48019	.	A	T	626	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=32.40;MQ0=0;QD=9.48;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:75:659,75,0
chrVI	48022	.	A	C	571	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=66;Dels=0.00;FS=8.586;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;MQRankSum=-1.384;QD=8.65;ReadPosRankSum=3.319;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:4,62:66:69:604,69,0
chrVI	48036	.	G	C	431	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=7.56;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:51:464,51,0
chrVI	48049	.	G	C	389	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.02;MQ0=0;QD=6.38;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:48:422,48,0
chrVI	48052	.	G	T	464	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=7.73;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:54:497,54,0
chrVI	48096	.	C	T	992	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=15.26;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1025,114,0
chrVI	48454	.	C	T	1311	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.86;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1344,150,0
chrVI	48535	.	G	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.21;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1203,141,0
chrVI	48548	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=4.523;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.917;QD=15.97;ReadPosRankSum=1.681;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1135,132,0
chrVI	48613	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=70;Dels=0.00;FS=12.532;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.956;QD=18.99;ReadPosRankSum=2.898;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:3,66:70:99:1362,156,0
chrVI	48712	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=3.701;HaplotypeScore=3.6227;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.611;QD=19.14;ReadPosRankSum=1.681;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1354,153,0
chrVI	48771	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.21;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1224,132,0
chrVI	49201	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.724;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.052;QD=19.71;ReadPosRankSum=1.680;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1334,150,0
chrVI	49258	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.01;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1592,180,0
chrVI	49324	.	T	C	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.109;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.4088;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.234;QD=19.07;ReadPosRankSum=2.263;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1559,161,0
chrVI	50410	.	T	C	2375	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5407;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.79;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2408,270,0
chrVI	50685	.	T	C	1745	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.99;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1778,198,0
chrVI	50825	.	C	T	1911	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1944,213,0
chrVI	51333	.	A	G	3819.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=166;Dels=0.00;FS=5.574;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.146;QD=23.01;ReadPosRankSum=1.711;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,165:166:99:3819,432,0
chrVI	51343	.	A	G	3414.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.008;DP=155;Dels=0.00;FS=11.418;HaplotypeScore=5.4891;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.309;QD=22.03;ReadPosRankSum=2.386;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:2,153:155:99:3414,374,0
chrVI	51603	.	G	A	3904.01	PASS	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.31;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,174:175:99:3904,432,0
chrVI	51748	.	G	A	1759	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.84;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1792,192,0
chrVI	51781	.	T	C	1411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.693;QD=23.13;ReadPosRankSum=1.617;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1444,165,0
chrVI	51970	.	A	G	2306	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.437;QD=19.22;ReadPosRankSum=2.858;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:3,117:120:99:2339,264,0
chrVI	52024	.	A	T	1881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.286;QD=20.23;ReadPosRankSum=1.618;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1914,213,0
chrVI	52648	.	T	C	1818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=5.130;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.664;QD=17.82;ReadPosRankSum=1.698;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,100:102:99:1851,213,0
chrVI	52838	.	G	A	748	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.78;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:781,84,0
chrVI	53077	.	T	A	2359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.242;QD=25.10;ReadPosRankSum=1.695;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2392,261,0
chrVI	54826	.	A	T	1803	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-1.668;QD=21.99;ReadPosRankSum=2.360;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1836,201,0
chrVI	55864	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.15;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1220,141,0
chrVI	56854	.	G	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.13;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1181,132,0
chrVI	57870	.	A	G	1556	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.270;QD=20.75;ReadPosRankSum=1.686;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1589,183,0
chrVI	58170	.	T	C	597	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:72:630,72,0
chrVI	58952	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.26;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1421,165,0
chrVI	58994	.	T	C	1470	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.14;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1503,171,0
chrVI	59306	.	A	C	2089	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.243;QD=19.17;ReadPosRankSum=1.700;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:1,106:109:99:2122,237,0
chrVI	59599	.	C	A	2109	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.92;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2142,234,0
chrVI	59811	.	C	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1475,162,0
chrVI	60234	.	G	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.72;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1463,159,0
chrVI	61214	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=9.837;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.478;QD=21.49;ReadPosRankSum=2.329;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1344,147,0
chrVI	61226	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.55;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1283,144,0
chrVI	61495	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.44;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1748,192,0
chrVI	61610	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.02;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1757,195,0
chrVI	62177	.	C	G	1230	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.52;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1263,147,0
chrVI	62492	.	G	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1835,201,0
chrVI	63014	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.00;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1666,183,0
chrVI	63394	.	C	G	1106	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.56;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1139,132,0
chrVI	63963	.	T	G	2078	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=0.753;QD=22.34;ReadPosRankSum=1.694;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2111,231,0
chrVI	64613	.	A	G	1055	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.91;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1088,123,0
chrVI	65125	.	T	C	1035	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=40.7055;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=15.00;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1068,123,0
chrVI	65183	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.06;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1189,135,0
chrVI	65467	.	G	A	1792	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.68;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1825,198,0
chrVI	65504	.	G	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.19;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1219,141,0
chrVI	65802	.	T	G	1051	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1084,123,0
chrVI	65879	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.51;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1301,144,0
chrVI	66047	.	G	C	1116	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.93;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,53:56:99:1149,132,0
chrVI	66355	.	C	G	984	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.57;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1017,120,0
chrVI	66377	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7637;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.615;QD=21.23;ReadPosRankSum=1.674;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1307,147,0
chrVI	66647	.	A	C	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=72;Dels=0.00;FS=5.716;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.254;QD=17.87;ReadPosRankSum=2.903;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:3,69:72:99:1320,153,0
chrVI	66666	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=16.14;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1195,132,0
chrVI	66725	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.12;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1229,138,0
chrVI	66782	.	C	T	1277	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.6455;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=17.99;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1310,147,0
chrVI	66793	.	G	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.48;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1253,141,0
chrVI	66910	.	C	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.11;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1159,126,0
chrVI	67160	.	C	G	1207	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.47;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1240,141,0
chrVI	67297	.	T	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.66;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1128,129,0
chrVI	67529	.	A	G	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=6.422;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.684;QD=20.21;ReadPosRankSum=2.362;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1165,132,0
chrVI	69778	.	T	C	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=2.967;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.538;QD=18.63;ReadPosRankSum=2.371;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1188,138,0
chrVI	69817	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=16.99;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1273,144,0
chrVI	70009	.	G	A	1356	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.23;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1389,153,0
chrVI	70057	.	C	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.69;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1768,195,0
chrVI	70279	.	A	T	1266	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.90;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1299,141,0
chrVI	70295	.	G	A	944	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=14.75;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:977,108,0
chrVI	70309	.	T	C	931	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=16.05;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:964,111,0
chrVI	70348	.	T	A	934	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=15.57;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:967,105,0
chrVI	70408	.	G	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.59;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1483,168,0
chrVI	70639	.	G	A	986	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.26;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1019,114,0
chrVI	70822	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.70;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1274,144,0
chrVI	70827	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=3.7379;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.72;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1216,132,0
chrVI	70891	.	G	A	736	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.89;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:769,84,0
chrVI	70957	.	T	C	804	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.10;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:837,93,0
chrVI	71011	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.501;QD=21.67;ReadPosRankSum=1.675;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1333,153,0
chrVI	71083	.	A	G	2489	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.22;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2522,294,0
chrVI	71197	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.50;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1710,192,0
chrVI	71500	.	G	A	2634	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.4967;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.17;SB=-1.549e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:2667,300,0
chrVI	71518	.	A	G	2511	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.7487;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.41;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2544,288,0
chrVI	71932	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.15;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1408,156,0
chrVI	71959	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.31;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1617,177,0
chrVI	72064	.	C	A	1401	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.73;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1434,159,0
chrVI	72192	.	A	C	2245	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.39;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2278,258,0
chrVI	72397	.	C	T	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=3.252;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=1.685;QD=18.26;ReadPosRankSum=-0.328;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1384,156,0
chrVI	72412	.	T	A	1328	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.19;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1361,153,0
chrVI	72490	.	A	G	1593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=2.931;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.094;QD=19.91;ReadPosRankSum=2.388;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1626,186,0
chrVI	72553	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=19.01;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1440,156,0
chrVI	72559	.	C	A	1437	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.74;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1470,162,0
chrVI	72722	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.12;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1295,138,0
chrVI	73033	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.33;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1251,144,0
chrVI	73335	.	G	A	462	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=12.16;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:54:495,54,0
chrVI	74535	.	C	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=12.4807;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.23;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1101,120,0
chrVI	74825	.	A	C	255	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=11.09;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:33:288,33,0
chrVI	74844	.	A	G	175.03	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=7.29;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:24:208,24,0
chrVI	74850	.	A	T	155.06	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=7.05;SB=-1.091e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:21:188,21,0
chrVI	74858	.	A	G	158.06	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=6.32;SB=-1.081e+02	GT:AD:DP:GQ:PL	1/1:0,24:25:21:191,21,0
chrVI	74862	.	A	G	169.03	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=5.83;SB=-1.230e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:24:202,24,0
chrVI	75054	.	A	G	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;DP=72;Dels=0.00;FS=5.841;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;MQRankSum=-1.578;QD=15.46;ReadPosRankSum=2.846;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:3,69:72:99:1146,129,0
chrVI	75055	.	A	T	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=2.999;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;MQRankSum=-2.057;QD=16.09;ReadPosRankSum=2.379;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:2,67:70:99:1159,126,0
chrVI	75069	.	G	A	812	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=13.31;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:93:845,93,0
chrVI	75101	.	A	G	399	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.27;MQ0=0;QD=10.50;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:48:432,48,0
chrVI	75434	.	C	T	1621	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=22.21;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1654,186,0
chrVI	75453	.	C	T	1316	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.7176;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=18.54;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1349,153,0
chrVI	76126	.	T	C	722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=3.606;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.755;QD=18.51;ReadPosRankSum=1.644;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:87:755,87,0
chrVI	76268	.	G	T	247	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=14.53;SB=-1.492e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:30:280,30,0
chrVI	76442	.	G	A	533	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.38;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,28:29:63:566,63,0
chrVI	76503	.	T	A	45.97	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.57;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:9:78,9,0
chrVI	76783	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=25.33;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:99:945,105,0
chrVI	76851	.	G	A	1187	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.98;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1220,135,0
chrVI	76860	.	C	T	1021	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.56;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1054,114,0
chrVI	76866	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.35;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1194,132,0
chrVI	76914	.	T	C	1016	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=17.52;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1049,117,0
chrVI	76992	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.63;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1247,141,0
chrVI	77007	.	T	G	1274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.427;QD=16.33;ReadPosRankSum=1.687;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1307,150,0
chrVI	77340	.	G	A	1717	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=12.2624;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.08;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1750,195,0
chrVI	77928	.	T	C	836	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=15.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:869,99,0
chrVI	77976	.	G	A	682	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=14.83;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,46:46:75:715,75,0
chrVI	77994	.	C	G	519	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=14.03;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:63:552,63,0
chrVI	77996	.	C	T	509	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=13.76;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:60:542,60,0
chrVI	78036	.	T	C	600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;MQRankSum=0.289;QD=16.67;ReadPosRankSum=1.636;SB=-6.901e+01	GT:AD:DP:GQ:PL	1/1:1,35:36:72:633,72,0
chrVI	78055	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5032;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-1.341;QD=17.60;ReadPosRankSum=1.676;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1124,129,0
chrVI	78069	.	A	G	1217	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.1107;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=1.528;QD=17.90;ReadPosRankSum=0.102;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1250,141,0
chrVI	78202	.	A	G	1351	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.1717;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,58:62:99:1384,162,0
chrVI	78568	.	A	G	2053	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.473;QD=19.19;ReadPosRankSum=1.700;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2086,237,0
chrVI	78750	.	G	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.5042;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.71;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1137,126,0
chrVI	79343	.	G	C	2778	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.22;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2811,318,0
chrVI	79488	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.49;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1666,195,0
chrVI	79533	.	A	G	1106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=67;Dels=0.00;FS=3.071;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.137;QD=16.51;ReadPosRankSum=2.372;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:2,61:67:99:1139,132,0
chrVI	79755	.	T	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.73;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1269,144,0
chrVI	79758	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=96;Dels=0.00;FS=5.649;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-1.330;QD=13.95;ReadPosRankSum=2.735;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:3,92:96:99:1372,153,0
chrVI	79809	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=91;Dels=0.00;FS=6.578;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.844;QD=16.51;ReadPosRankSum=2.367;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:2,87:91:99:1535,174,0
chrVI	80049	.	G	A	1547	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=18.64;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,79:83:99:1580,177,0
chrVI	80232	.	T	C	1265	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.60;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1298,144,0
chrVI	81945	.	T	C	2035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.627;QD=21.65;ReadPosRankSum=1.695;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2068,234,0
chrVI	81965	.	T	C	2589	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.57;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2622,300,0
chrVI	82242	.	T	C	1332	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=16.86;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:79:99:1365,156,0
chrVI	82265	.	T	C	1294	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=15.59;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1327,150,0
chrVI	82679	.	T	A	1753	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.64;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1786,198,0
chrVI	83611	.	A	G	2403	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.02;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2436,276,0
chrVI	83687	.	G	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.05;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2180,237,0
chrVI	83900	.	T	C	1451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=2.685;HaplotypeScore=8.7014;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;MQRankSum=0.692;QD=21.66;ReadPosRankSum=2.375;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:99:1484,168,0
chrVI	84102	.	C	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.24;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1476,168,0
chrVI	84382	.	A	G	1836	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=1.533;QD=19.53;ReadPosRankSum=2.371;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1869,210,0
chrVI	84403	.	G	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.18;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1950,213,0
chrVI	84474	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.91;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1260,141,0
chrVI	84512	.	T	C	1500	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.59;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1533,171,0
chrVI	85385	.	G	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8022;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.02;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1883,201,0
chrVI	85636	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.018;QD=21.02;ReadPosRankSum=1.076;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2051,228,0
chrVI	85688	.	G	C	2008	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.92;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2041,231,0
chrVI	86110	.	T	C	988	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.76;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1021,114,0
chrVI	86322	.	A	G	1636	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.71;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1669,189,0
chrVI	86374	.	A	G	1908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=83;Dels=0.00;FS=4.314;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;MQRankSum=0.748;QD=22.99;ReadPosRankSum=1.647;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,80:83:99:1941,219,0
chrVI	86446	.	T	C	923	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=17.42;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:956,111,0
chrVI	86452	.	G	A	887	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=16.74;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:920,102,0
chrVI	86478	.	G	C	582	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=11.41;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:69:615,69,0
chrVI	86488	.	C	T	487	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=8.85;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:57:520,57,0
chrVI	86499	.	G	A	463	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=8.74;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:54:496,54,0
chrVI	86578	.	G	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.43;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1194,129,0
chrVI	86707	.	C	T	1780	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.8888;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.14;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1813,207,0
chrVI	86721	.	G	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.40;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1857,201,0
chrVI	86776	.	C	A	1672	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=17.98;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1705,192,0
chrVI	86944	.	G	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.31;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1589,177,0
chrVI	87400	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.31;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1461,162,0
chrVI	87634	.	G	A	1853	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=23.46;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1886,207,0
chrVI	87650	.	T	C	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=0.693;QD=22.00;ReadPosRankSum=1.646;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1793,201,0
chrVI	87991	.	C	T	939.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.834;DP=108;Dels=0.00;FS=41.442;HaplotypeScore=3.2778;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=0;MQRankSum=-0.243;QD=8.69;ReadPosRankSum=-5.437;SB=-2.930e+02	GT:AD:DP:GQ:PL	0/1:45,62:108:99:969,0,206
chrVI	88000	.	C	T	654.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.033;DP=98;Dels=0.00;FS=26.483;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=45.14;MQ0=0;MQRankSum=-2.789;QD=6.67;ReadPosRankSum=-7.210;SB=-2.530e+02	GT:AD:DP:GQ:PL	0/1:48,50:98:99:684,0,229
chrVI	88015	.	T	C	268.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;DP=93;Dels=0.00;FS=20.821;HaplotypeScore=7.4466;MLEAC=1;MLEAF=0.500;MQ=46.17;MQ0=0;MQRankSum=-4.931;QD=2.88;ReadPosRankSum=-6.344;SB=-1.150e+02	GT:AD:DP:GQ:PL	0/1:61,31:93:99:298,0,445
chrVI	88711	.	A	T	1021	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=16.47;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1054,117,0
chrVI	88726	.	G	A	815	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=13.81;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:96:848,96,0
chrVI	88783	.	C	T	1187	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.98;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1220,132,0
chrVI	88843	.	T	A	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.993;QD=19.15;ReadPosRankSum=1.640;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1469,159,0
chrVI	88861	.	G	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.07;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1368,147,0
chrVI	88900	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.71;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1343,147,0
chrVI	88942	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.47;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1302,144,0
chrVI	89068	.	C	T	724	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=15.40;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:84:757,84,0
chrVI	89110	.	C	T	909	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.82;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:942,102,0
chrVI	89173	.	C	T	1010	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=15.30;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1043,117,0
chrVI	89317	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.44;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1062,117,0
chrVI	89605	.	T	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.49;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1475,162,0
chrVI	89727	.	A	G	1414	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.42;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1447,159,0
chrVI	89832	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=4.491;HaplotypeScore=5.9195;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.578;QD=21.09;ReadPosRankSum=1.655;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:982,111,0
chrVI	90217	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.51;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1744,201,0
chrVI	90244	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.63;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1374,156,0
chrVI	90592	.	C	G	1714	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1747,195,0
chrVI	90659	.	C	T	1176	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1209,135,0
chrVI	90767	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.81;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1237,135,0
chrVI	90772	.	T	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=18.89;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1185,135,0
chrVI	90851	.	C	A	1448	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.4802;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.66;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1481,165,0
chrVI	90984	.	C	T	1246	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.86;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1279,141,0
chrVI	91337	.	C	T	1574	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.27;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1607,177,0
chrVI	91792	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=15.14;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1502,174,0
chrVI	91861	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.979;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.208;QD=20.44;ReadPosRankSum=1.640;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1566,183,0
chrVI	92092	.	G	T	1023	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=18.94;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1056,117,0
chrVI	92105	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=-0.128;QD=18.37;ReadPosRankSum=1.668;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1025,117,0
chrVI	92119	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=19.26;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1073,123,0
chrVI	92139	.	C	T	1234	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=16.45;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1267,150,0
chrVI	92310	.	C	T	896	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:929,99,0
chrVI	92421	.	T	C	318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;DP=28;Dels=0.00;FS=1.820;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.965;QD=11.36;ReadPosRankSum=1.330;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:7,19:28:39:351,39,0
chrVI	92446	.	A	G	29.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;DP=20;Dels=0.00;FS=8.038;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.526;QD=1.45;ReadPosRankSum=-2.681;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:14,6:20:59:59,0,91
chrVI	92451	.	T	C	101.26	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.63;SB=-1.843e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:15:134,15,0
chrVI	92502	.	G	A	219.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.758;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.5991;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;MQRankSum=-1.191;QD=6.84;ReadPosRankSum=1.191;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:27:252,27,0
chrVI	92503	.	G	A	212.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.5991;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;MQRankSum=0.866;QD=6.63;ReadPosRankSum=1.191;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:27:245,27,0
chrVI	92506	.	G	A	102.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;DP=35;Dels=0.00;FS=3.462;HaplotypeScore=3.5991;MLEAC=1;MLEAF=0.500;MQ=29.80;MQ0=0;MQRankSum=0.267;QD=2.91;ReadPosRankSum=0.302;SB=-7.301e+01	GT:AD:DP:GQ:PL	0/1:24,11:35:75:132,0,75
chrVI	92511	.	C	T	85.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;DP=33;Dels=0.00;FS=3.589;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=31.22;MQ0=0;MQRankSum=0.101;QD=2.58;ReadPosRankSum=-0.950;SB=-6.901e+01	GT:AD:DP:GQ:PL	0/1:24,9:33:74:115,0,74
chrVI	92513	.	G	A	78.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;DP=34;Dels=0.00;FS=3.712;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=32.43;MQ0=0;MQRankSum=-0.625;QD=2.29;ReadPosRankSum=-1.132;SB=-5.301e+01	GT:AD:DP:GQ:PL	0/1:25,9:34:98:108,0,98
chrVI	92534	.	A	G	355	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=10.14;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:45:388,45,0
chrVI	92570	.	A	G	490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.882;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;MQRankSum=0.236;QD=11.14;ReadPosRankSum=1.654;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:60:523,60,0
chrVI	92573	.	A	G	496	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=11.02;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:60:529,60,0
chrVI	92787	.	A	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.75;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1577,177,0
chrVI	92851	.	G	A	659	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=17.81;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:692,75,0
chrVI	92856	.	G	A	561	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=16.50;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:66:594,66,0
chrVI	93041	.	C	T	2593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=4.661;HaplotypeScore=5.0803;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.903;QD=21.97;ReadPosRankSum=-0.370;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:1,116:118:99:2626,291,0
chrVI	93077	.	A	C	2707	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.66;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2740,309,0
chrVI	93192	.	G	A	2128	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.91;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2161,237,0
chrVI	93235	.	A	G	962	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.49;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:995,111,0
chrVI	93244	.	C	G	869	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.38;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:902,105,0
chrVI	93280	.	C	T	757	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=14.56;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:87:790,87,0
chrVI	93589	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.950;QD=17.54;ReadPosRankSum=2.317;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1331,147,0
chrVI	93846	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.09;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1720,189,0
chrVI	94130	.	T	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.23;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1552,171,0
chrVI	94156	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.08;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1317,150,0
chrVI	94825	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.380;QD=20.80;ReadPosRankSum=1.479;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:99:886,102,0
chrVI	94981	.	T	C	753	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=14.21;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:90:786,90,0
chrVI	95137	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.00;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1185,129,0
chrVI	95308	.	C	A	571	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.84;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:66:604,66,0
chrVI	95347	.	A	C	1048	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.95;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1081,123,0
chrVI	95387	.	G	C	860	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.24;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:893,99,0
chrVI	95585	.	T	A	1428	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8078;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.30;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1461,171,0
chrVI	95601	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=-0.650;QD=19.39;ReadPosRankSum=1.624;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1274,147,0
chrVI	95627	.	A	G	868	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=6.342;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.247;QD=15.50;ReadPosRankSum=1.547;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:901,105,0
chrVI	95632	.	G	A	801	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.71;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:834,93,0
chrVI	95793	.	A	G	781	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.98;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:814,93,0
chrVI	96502	.	T	C	254	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=13.37;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:33:287,33,0
chrVI	96802	.	G	A	649	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=15.83;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:75:682,75,0
chrVI	96814	.	G	A	450	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=12.50;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:54:483,54,0
chrVI	96991	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.47;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1680,186,0
chrVI	97141	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=82;Dels=0.00;FS=11.151;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.013;QD=20.68;ReadPosRankSum=2.913;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:3,79:82:99:1729,198,0
chrVI	97235	.	T	C	1439	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=18.22;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1472,168,0
chrVI	97308	.	G	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.10;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1463,162,0
chrVI	97628	.	A	G	169.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.215;DP=119;Dels=0.00;FS=11.305;HaplotypeScore=161.8562;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;MQRankSum=0.096;QD=1.42;ReadPosRankSum=-6.311;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:90,29:119:27:202,27,0
chrVI	97636	.	A	G	1456	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.860;DP=97;Dels=0.00;FS=14.898;HaplotypeScore=14.6177;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.827;QD=15.01;ReadPosRankSum=4.596;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:12,85:97:99:1489,171,0
chrVI	97737	.	C	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.33;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1246,138,0
chrVI	97814	.	T	G	1411	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.07;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1444,168,0
chrVI	97847	.	A	G	1332	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.08;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1365,153,0
chrVI	97975	.	C	T	1132	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0588;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=19.19;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1165,132,0
chrVI	98071	.	C	T	980	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=18.15;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1013,114,0
chrVI	98248	.	G	T	1937	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.61;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1970,219,0
chrVI	98282	.	C	A	1545	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.06;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1578,174,0
chrVI	98302	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.29;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1169,135,0
chrVI	98330	.	G	A	1062	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.31;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1095,117,0
chrVI	98351	.	A	C	445	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=12.36;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:54:478,54,0
chrVI	98368	.	A	G	362	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.42;MQ0=0;QD=9.78;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:45:395,45,0
chrVI	98380	.	G	A	516	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=13.95;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:549,60,0
chrVI	98423	.	A	G	637	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.92;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:75:670,75,0
chrVI	98428	.	A	G	683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=3.010;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-1.654;QD=15.18;ReadPosRankSum=1.654;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:81:716,81,0
chrVI	99342	.	G	A	986	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;QD=19.72;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1019,114,0
chrVI	99817	.	G	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.63;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1685,186,0
chrVI	99948	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.10;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1552,168,0
chrVI	100432	.	G	A	2444	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2477,270,0
chrVI	100560	.	T	C	1755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.491;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.192;QD=19.29;ReadPosRankSum=1.617;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1788,204,0
chrVI	103865	.	A	C	473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.606;QD=10.75;ReadPosRankSum=2.338;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:2,42:44:57:506,57,0
chrVI	106494	.	C	G	1848	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.27;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1881,216,0
chrVI	107101	.	T	A	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=4.279;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.178;QD=18.72;ReadPosRankSum=1.686;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1456,156,0
chrVI	107743	.	G	A	2164	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=21.43;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2197,237,0
chrVI	108206	.	C	T	1027	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.67;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1060,117,0
chrVI	108272	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=17.09;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1127,132,0
chrVI	108299	.	T	C	1731	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.64;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1764,198,0
chrVI	108416	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.76;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1694,186,0
chrVI	108452	.	A	G	1385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=77;Dels=0.00;FS=8.980;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.707;QD=17.99;ReadPosRankSum=2.253;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:2,73:77:99:1418,165,0
chrVI	108518	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=17.97;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1201,132,0
chrVI	108536	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=17.08;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1297,150,0
chrVI	108637	.	C	A	899	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=14.05;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:932,99,0
chrVI	108834	.	G	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.9918;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.46;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1325,147,0
chrVI	109006	.	C	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.21;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1327,144,0
chrVI	109031	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.59;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1433,159,0
chrVI	109247	.	T	C	1248	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.46;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1281,147,0
chrVI	109402	.	A	C	1461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.338;DP=88;Dels=0.00;FS=3.424;HaplotypeScore=4.4430;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;MQRankSum=1.260;QD=16.60;ReadPosRankSum=1.338;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1494,150,0
chrVI	109415	.	G	A	1603	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.01;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1636,180,0
chrVI	109958	.	G	A	2049	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=18.46;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2082,228,0
chrVI	110112	.	G	A	246	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=34.3418;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=2.70;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:30:279,30,0
chrVI	110137	.	G	A	576	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=60.8900;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=7.58;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:69:609,69,0
chrVI	110330	.	G	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=16.13;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1533,168,0
chrVI	110354	.	A	G	1869	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.214;DP=94;Dels=0.00;FS=8.916;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=-0.013;QD=19.88;ReadPosRankSum=2.397;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1902,213,0
chrVI	110405	.	C	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.85;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1781,198,0
chrVI	110435	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.93;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1189,129,0
chrVI	110527	.	C	G	2829	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.1099;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.28;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2862,318,0
chrVI	110590	.	T	C	4097.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=176;Dels=0.00;FS=2.552;HaplotypeScore=6.3438;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.569;QD=23.28;ReadPosRankSum=2.960;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:3,172:176:99:4097,474,0
chrVI	110650	.	C	T	3090	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.7428;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.41;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:3123,342,0
chrVI	110685	.	C	T	2323	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.3770;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.03;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2356,255,0
chrVI	110796	.	G	A	2163	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.21;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2196,243,0
chrVI	110927	.	C	T	2472	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.8008;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.87;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2505,279,0
chrVI	111011	.	T	C	1631	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.89;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1664,189,0
chrVI	111075	.	A	G	2144	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=102;Dels=0.00;FS=2.775;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.205;QD=21.02;ReadPosRankSum=2.401;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:2177,243,0
chrVI	111162	.	A	G	1940	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.56;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1973,222,0
chrVI	111258	.	T	A	983	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.86;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1016,108,0
chrVI	111264	.	A	C	798	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.46;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:831,93,0
chrVI	111289	.	G	T	895	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.65;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:928,102,0
chrVI	111378	.	T	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.75;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1771,201,0
chrVI	111480	.	T	C	1858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.808;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.759;QD=18.58;ReadPosRankSum=3.003;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:5,93:100:99:1891,200,0
chrVI	111571	.	T	A	876	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.64;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:909,99,0
chrVI	111627	.	T	C	953	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.98;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:986,111,0
chrVI	111687	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=19.66;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1232,135,0
chrVI	111691	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;MQRankSum=0.797;QD=18.29;ReadPosRankSum=1.677;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1185,135,0
chrVI	112003	.	A	G	824	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=16.82;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:857,99,0
chrVI	112108	.	G	T	667	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=15.88;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:78:700,78,0
chrVI	112154	.	T	C	572	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=15.89;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:66:605,66,0
chrVI	112159	.	A	T	550	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=14.86;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:63:583,63,0
chrVI	112214	.	A	G	856	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.46;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,52:52:99:889,102,0
chrVI	112349	.	T	C	858	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.95;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:891,102,0
chrVI	112383	.	C	T	1135	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.65;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1168,129,0
chrVI	112417	.	A	G	585	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.50;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:69:618,69,0
chrVI	112425	.	A	G	528	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=17.60;SB=-7.401e+01	GT:AD:DP:GQ:PL	1/1:0,29:30:66:561,66,0
chrVI	112435	.	A	G	454	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.21;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,26:28:54:487,54,0
chrVI	112767	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.24;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1399,153,0
chrVI	112984	.	T	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=14.41;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1186,132,0
chrVI	113076	.	C	A	1007	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=18.31;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,51:55:99:1040,114,0
chrVI	113238	.	C	T	730	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.25;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:84:763,84,0
chrVI	113247	.	T	C	765	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.66;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:798,90,0
chrVI	113328	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.05;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1271,138,0
chrVI	113586	.	C	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.56;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1246,138,0
chrVI	113778	.	T	C	1545	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.074;QD=19.56;ReadPosRankSum=1.688;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1578,180,0
chrVI	113799	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.87;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1801,198,0
chrVI	113847	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.7091;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=18.37;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1539,168,0
chrVI	113910	.	A	G	1145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.321;QD=21.20;ReadPosRankSum=1.540;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1178,129,0
chrVI	114126	.	T	A	961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.6214;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=1.191;QD=15.02;ReadPosRankSum=1.678;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:994,108,0
chrVI	114171	.	A	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.87;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1433,156,0
chrVI	114251	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.459;QD=19.97;ReadPosRankSum=1.681;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:1,67:70:99:1431,162,0
chrVI	114275	.	C	G	1128	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.341;QD=18.19;ReadPosRankSum=1.565;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1161,129,0
chrVI	114277	.	T	C	1127	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.18;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1160,129,0
chrVI	114340	.	T	C	1930	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.98;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1963,222,0
chrVI	114541	.	T	C	2301	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.50;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2334,267,0
chrVI	114785	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.460;QD=17.29;ReadPosRankSum=2.331;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1468,165,0
chrVI	114918	.	C	T	2787	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=17.2989;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.83;SB=-1.548e+03	GT:AD:DP:GQ:PL	1/1:0,147:148:99:2820,315,0
chrVI	115048	.	A	G	2827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.298;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.407;QD=20.94;ReadPosRankSum=0.568;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:1,127:135:99:2860,310,0
chrVI	115088	.	T	C	2759	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3983;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.78;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2792,312,0
chrVI	115119	.	T	C	1963	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=21.11;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1996,228,0
chrVI	115235	.	C	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=14.94;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1452,156,0
chrVI	115291	.	C	T	1666	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.178;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.0169;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.069;QD=16.50;ReadPosRankSum=1.247;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:1699,189,0
chrVI	115411	.	A	C	1424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-1.680;QD=14.83;ReadPosRankSum=2.398;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:2,94:96:99:1457,168,0
chrVI	115494	.	C	G	1799	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.99;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,97:100:99:1832,207,0
chrVI	115739	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.43;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1767,192,0
chrVI	116037	.	A	G	1439	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.99;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1472,165,0
chrVI	116045	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=2.608;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.526;QD=17.11;ReadPosRankSum=2.911;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1385,159,0
chrVI	116186	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.17;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1494,162,0
chrVI	116660	.	T	C	934	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.39;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:967,108,0
chrVI	116775	.	G	A	1205	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=19.0180;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=15.06;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1238,135,0
chrVI	116776	.	C	T	1197	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=19.0180;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=14.96;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1230,135,0
chrVI	116777	.	C	A	1176	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=18.2293;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=14.89;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1209,132,0
chrVI	116839	.	G	C	1785	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.59;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1818,201,0
chrVI	117833	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.4819;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.32;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1371,153,0
chrVI	117890	.	A	G	1460	filter	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=5;QD=17.18;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:3,82:85:99:1493,168,0
chrVI	117908	.	C	T	1585	filter	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=5;QD=18.43;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:3,83:86:99:1618,180,0
chrVI	118346	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=4.281;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.060;QD=21.80;ReadPosRankSum=1.681;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,66:70:99:1559,171,0
chrVI	118499	.	T	C	1674	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.69;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1707,195,0
chrVI	118563	.	C	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0153;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=19.34;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1677,180,0
chrVI	118682	.	T	C	1608	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.16;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1641,186,0
chrVI	118701	.	T	C	1557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.494;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.140;QD=20.49;ReadPosRankSum=1.687;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1590,180,0
chrVI	118737	.	C	T	1201	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=20.71;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1234,135,0
chrVI	118792	.	C	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.33;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1433,156,0
chrVI	118855	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.359;QD=21.50;ReadPosRankSum=1.679;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1452,165,0
chrVI	119224	.	G	C	2019	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7349;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.39;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2052,228,0
chrVI	119266	.	C	A	983	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.0437;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=13.47;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1016,114,0
chrVI	119276	.	A	G	885	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;DP=70;Dels=0.00;FS=11.298;HaplotypeScore=39.2931;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-1.450;QD=12.64;ReadPosRankSum=2.900;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:918,105,0
chrVI	119328	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.94;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1185,135,0
chrVI	119414	.	G	A	2378	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=17.75;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2411,261,0
chrVI	119417	.	C	T	2184	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=15.83;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2217,249,0
chrVI	119659	.	C	T	2046	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.24;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2079,234,0
chrVI	119764	.	C	G	1909	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.98;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1942,222,0
chrVI	119911	.	T	C	1680	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.54;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1713,189,0
chrVI	120163	.	A	G	1524	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.88;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1557,174,0
chrVI	120204	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=18.55;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1387,159,0
chrVI	120230	.	G	A	1695	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.18;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1728,189,0
chrVI	120376	.	G	A	1988	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.61;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2021,219,0
chrVI	120381	.	C	T	1973	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.68;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2006,216,0
chrVI	120550	.	C	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.76;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1861,204,0
chrVI	121195	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.24;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,67:71:99:1328,153,0
chrVI	121532	.	G	A	2519	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.11;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2552,282,0
chrVI	121619	.	G	C	1821	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.69;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1854,210,0
chrVI	121761	.	T	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.68;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1681,183,0
chrVI	123799	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.005;QD=18.25;ReadPosRankSum=1.689;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1511,174,0
chrVI	125674	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.51;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1496,162,0
chrVI	125793	.	A	G	2050	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.28;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2083,231,0
chrVI	126749	.	C	T	1377	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.95;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1410,153,0
chrVI	127141	.	C	T	1789	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1822,198,0
chrVI	127630	.	A	G	1099	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.98;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1132,129,0
chrVI	127639	.	T	C	1047	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=18.70;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1080,123,0
chrVI	128175	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.164;QD=23.25;ReadPosRankSum=1.675;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1451,165,0
chrVI	129074	.	C	T	891	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.37;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:924,102,0
chrVI	131200	.	C	T	1361	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.72;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1394,156,0
chrVI	131591	.	T	A	641	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.81;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:674,75,0
chrVI	131646	.	T	C	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=3.072;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.780;QD=23.42;ReadPosRankSum=2.348;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:1157,129,0
chrVI	132232	.	T	A	1682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.022;QD=21.02;ReadPosRankSum=1.688;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1715,189,0
chrVI	133213	.	G	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.37;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1294,141,0
chrVI	133255	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=2.991;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.499;QD=17.00;ReadPosRankSum=2.355;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:917,102,0
chrVI	133441	.	A	G	1840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.202;QD=21.65;ReadPosRankSum=1.691;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1873,213,0
chrVI	134123	.	T	G	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.055;QD=22.77;ReadPosRankSum=2.878;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:3,71:75:99:1741,198,0
chrVI	134370	.	C	T	2414	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2447,273,0
chrVI	135481	.	G	A	1177	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.80;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1210,132,0
chrVI	135529	.	T	C	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=4.091;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.323;QD=18.36;ReadPosRankSum=1.556;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1153,132,0
chrVI	135874	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1504,162,0
chrVI	136273	.	G	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=18.88;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1638,183,0
chrVI	136788	.	T	A	2113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=92;Dels=0.00;FS=3.006;HaplotypeScore=11.4324;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.245;QD=22.97;ReadPosRankSum=2.396;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2146,231,0
chrVI	137592	.	G	A	2103	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.9217;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.03;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2136,228,0
chrVI	137959	.	A	G	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=6;QD=1.65;SB=-1.740e+00	GT:AD:DP:GQ:PL	1/1:3,12:15:6:56,6,0
chrVI	143586	.	A	G	211.01	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.65;MQ0=34;QD=4.80;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:19,25:44:27:244,27,0
chrVI	143749	.	C	T	1868	filter	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=15;QD=21.72;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1901,210,0
chrVI	143779	.	C	G	1673	filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=8;QD=21.45;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1706,189,0
chrVI	143826	.	C	T	342	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=18.00;SB=-7.578e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:39:375,39,0
chrVI	143864	.	T	A	68.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=5.71;SB=-2.851e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:12:101,12,0
chrVI	143865	.	C	T	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=4.45;SB=-2.896e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:9:81,9,0
chrVI	143869	.	A	T	50.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=20;Dels=0.05;FS=0.000;HaplotypeScore=4.8507;MLEAC=2;MLEAF=1.00;MQ=28.80;MQ0=0;MQRankSum=1.610;QD=2.55;ReadPosRankSum=2.684;SB=2.03	GT:AD:DP:GQ:PL	1/1:11,8:19:9:83,9,0
chrVI	143878	.	A	C	15.14	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DP=22;Dels=0.00;FS=26.010;HaplotypeScore=13.3533;MLEAC=1;MLEAF=0.500;MQ=31.00;MQ0=0;MQRankSum=-1.907;QD=0.69;ReadPosRankSum=1.518;SB=0.631	GT:AD:DP:GQ:PL	0/1:7,15:22:45:45,0,105
chrVI	143881	.	T	A	49.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;DP=26;Dels=0.00;FS=30.699;HaplotypeScore=11.4203;MLEAC=1;MLEAF=0.500;MQ=31.03;MQ0=0;MQRankSum=-2.861;QD=1.88;ReadPosRankSum=1.361;SB=0.528	GT:AD:DP:GQ:PL	0/1:8,18:26:79:79,0,125
chrVI	143888	.	A	T	50.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.777;DP=32;Dels=0.00;FS=48.045;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.46;MQ0=0;MQRankSum=-4.563;QD=1.56;ReadPosRankSum=1.508;SB=0.325	GT:AD:DP:GQ:PL	0/1:11,21:32:80:80,0,184
chrVI	144214	.	C	T	2403	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=22.05;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2436,267,0
chrVI	144372	.	A	T	2105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;MQRankSum=0.476;QD=22.88;ReadPosRankSum=1.618;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2138,243,0
chrVI	144571	.	A	C	2396	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=21.39;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2429,273,0
chrVI	144601	.	A	G	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;MQRankSum=-1.335;QD=20.16;ReadPosRankSum=2.403;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2170,246,0
chrVI	144623	.	G	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=18.48;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1789,195,0
chrVI	144624	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=18.71;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1792,195,0
chrVI	144681	.	T	A	2694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=1.590;QD=22.08;ReadPosRankSum=1.675;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2727,300,0
chrVI	144714	.	G	A	3045	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=3.8827;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=22.56;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3078,345,0
chrVI	144737	.	A	G	2208	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.6786;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.95;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2241,252,0
chrVI	144851	.	T	G	1174	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;QD=15.05;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1207,135,0
chrVI	144869	.	C	T	1178	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3816;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=15.30;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1211,135,0
chrVI	144880	.	T	A	1091	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=7.478;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;MQRankSum=-1.759;QD=14.55;ReadPosRankSum=2.384;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1124,126,0
chrVI	144881	.	G	A	1165	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=14.75;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1198,138,0
chrVI	144890	.	G	A	1253	SnpCluster	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=13.92;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1286,144,0
chrVI	144936	.	A	G	2467	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=20.56;SB=-1.542e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2500,282,0
chrVI	144966	.	G	A	2805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=165;Dels=0.00;FS=3.617;HaplotypeScore=129.6227;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=0.742;QD=17.00;ReadPosRankSum=0.914;SB=-1.876e+03	GT:AD:DP:GQ:PL	1/1:1,160:165:99:2838,315,0
chrVI	145072	.	A	C	2340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.873;QD=18.72;ReadPosRankSum=1.677;SB=-1.414e+03	GT:AD:DP:GQ:PL	1/1:1,124:125:99:2373,270,0
chrVI	145086	.	T	C	1922	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=17.80;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1955,225,0
chrVI	145095	.	G	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.56;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1821,204,0
chrVI	145174	.	T	C	1575	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=6.527;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;MQRankSum=0.046;QD=19.69;ReadPosRankSum=2.388;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1608,180,0
chrVI	145543	.	C	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.53;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1080,123,0
chrVI	145546	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.79;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1197,129,0
chrVI	146104	.	G	A	2169	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.36;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2202,240,0
chrVI	147466	.	G	A	2233	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.11;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2266,246,0
chrVI	147986	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.68;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1315,144,0
chrVI	148496	.	C	T	968	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=40.2110;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1001,108,0
chrVI	148573	.	G	A	232	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.57;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,13:14:30:265,30,0
chrVI	148767	.	G	A	968	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.20;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1001,114,0
chrVI	148875	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.458;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.849;QD=21.41;ReadPosRankSum=1.664;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1125,129,0
chrVI	149493	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.15;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1484,168,0
chrVI	149865	.	T	A	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.050;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.783;QD=15.36;ReadPosRankSum=1.883;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1170,110,0
chrVI	149995	.	A	G	2264	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.42;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2297,255,0
chrVI	150453	.	T	C	1249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.520;QD=20.15;ReadPosRankSum=1.617;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,59:62:99:1282,147,0
chrVI	151128	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.28;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1757,195,0
chrVI	151631	.	C	G	1473	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.5610;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.64;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1506,168,0
chrVI	153323	.	T	A	2143	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.96;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2176,237,0
chrVI	153342	.	A	G	2133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9969;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.595;QD=16.53;ReadPosRankSum=1.651;SB=-1.535e+03	GT:AD:DP:GQ:PL	1/1:1,127:129:99:2166,246,0
chrVI	153360	.	A	G	2115	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.6199;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=16.79;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2148,243,0
chrVI	153974	.	G	A	1631	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.33;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1664,180,0
chrVI	153977	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.90;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1622,183,0
chrVI	154432	.	A	C	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=1.325;QD=21.45;ReadPosRankSum=1.664;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1127,129,0
chrVI	154438	.	T	C	1010	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=21.04;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1043,123,0
chrVI	154568	.	A	G	1060	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=3.900;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.000;QD=19.63;ReadPosRankSum=1.668;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1093,123,0
chrVI	154773	.	G	A	1146	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=19.42;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1179,132,0
chrVI	154845	.	A	G	1255	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.27;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1288,144,0
chrVI	154989	.	C	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.62;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1387,153,0
chrVI	155037	.	T	G	1210	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.020;QD=19.84;ReadPosRankSum=2.248;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1243,141,0
chrVI	155068	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.90;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1224,138,0
chrVI	155109	.	G	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1915;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=17.18;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1287,138,0
chrVI	155127	.	G	T	954	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.90;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:987,108,0
chrVI	155175	.	A	G	1025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.543;QD=15.30;ReadPosRankSum=1.577;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1058,117,0
chrVI	155178	.	C	T	990	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=15.97;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1023,111,0
chrVI	155241	.	T	G	2150	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9657;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.08;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2183,249,0
chrVI	155336	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.84;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1889,207,0
chrVI	155547	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.315;QD=20.11;ReadPosRankSum=1.522;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1360,156,0
chrVI	155566	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.03;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1421,159,0
chrVI	156218	.	A	G	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.979;QD=18.28;ReadPosRankSum=1.657;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:874,99,0
chrVI	156651	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.83;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1430,156,0
chrVI	156928	.	C	T	2391	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.54;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2424,267,0
chrVI	157884	.	T	A	669	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;MQRankSum=0.758;QD=10.45;ReadPosRankSum=1.678;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:78:702,78,0
chrVI	157888	.	G	T	485	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=33.4678;MLEAC=2;MLEAF=1.00;MQ=31.25;MQ0=0;QD=7.95;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:57:518,57,0
chrVI	157891	.	C	T	492	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=35.3990;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.46;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:57:525,57,0
chrVI	157913	.	G	A	271	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.02;MQ0=0;QD=7.32;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:33:304,33,0
chrVI	158086	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=18.49;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:865,99,0
chrVI	158164	.	G	A	472	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=14.75;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:54:505,54,0
chrVI	158256	.	A	T	265	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.05;MQ0=0;QD=15.59;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:33:298,33,0
chrVI	158337	.	A	G	293	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=8.37;SB=-8.701e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:36:326,36,0
chrVI	158348	.	T	G	417	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=13.03;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:51:450,51,0
chrVI	159105	.	T	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=15.15;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1669,183,0
chrVI	159117	.	T	A	1515	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=14.71;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1548,168,0
chrVI	159235	.	G	C	1350	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.09;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1383,156,0
chrVI	159554	.	A	G	1071	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.73;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1104,123,0
chrVI	159556	.	A	G	1117	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.73;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1150,129,0
chrVI	159616	.	T	C	824	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.48;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:96:857,96,0
chrVI	159744	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=75;Dels=0.00;FS=3.006;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.148;QD=20.35;ReadPosRankSum=2.286;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1559,174,0
chrVI	159955	.	T	G	1887	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.46;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1920,222,0
chrVI	160603	.	A	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.20;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1144,132,0
chrVI	160696	.	G	A	2380	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.4984;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.70;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,112:115:99:2413,264,0
chrVI	160946	.	G	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1269,141,0
chrVI	161071	.	C	T	2187	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.77;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2220,240,0
chrVI	161110	.	G	A	1972	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=19.92;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2005,219,0
chrVI	161167	.	T	C	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.689;QD=19.00;ReadPosRankSum=1.665;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1990,228,0
chrVI	161189	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.92;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1700,192,0
chrVI	161250	.	T	A	859	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=14.81;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:96:892,96,0
chrVI	161261	.	G	T	795	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=15.59;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:828,93,0
chrVI	161436	.	T	C	1543	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=17.34;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1576,177,0
chrVI	161501	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.672;QD=18.28;ReadPosRankSum=1.651;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1587,180,0
chrVI	161565	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;MQRankSum=1.512;QD=19.79;ReadPosRankSum=1.677;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1280,147,0
chrVI	161808	.	T	C	630	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=18.53;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:75:663,75,0
chrVI	161858	.	C	T	504	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=14.40;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:60:537,60,0
chrVI	161877	.	G	A	502	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=21.5849;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=18.59;SB=-6.536e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:57:535,57,0
chrVI	161967	.	G	C	133.13	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=29.14;MQ0=1;QD=2.22;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:1,59:60:18:166,18,0
chrVI	162052	.	T	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=1;QD=17.80;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1190,132,0
chrVI	162066	.	C	T	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.662;DP=100;Dels=0.00;FS=168.613;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;MQRankSum=6.550;QD=12.97;ReadPosRankSum=7.198;SB=-3.801e+01	GT:AD:DP:GQ:PL	1/1:36,63:100:99:1330,147,0
chrVI	162110	.	G	A	1896	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.00;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1929,207,0
chrVI	162175	.	A	G	1138	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.47;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1171,129,0
chrVI	162310	.	T	C	1843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.224;DP=110;Dels=0.00;FS=14.062;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-0.689;QD=16.75;ReadPosRankSum=2.405;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:2,107:110:99:1876,216,0
chrVI	162720	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.80;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1559,171,0
chrVI	162872	.	A	G	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=75;Dels=0.00;FS=6.451;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.369;QD=20.97;ReadPosRankSum=2.382;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:2,71:75:99:1606,183,0
chrVI	163957	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.33;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1212,135,0
chrVI	163972	.	T	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=21.86;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1323,147,0
chrVI	164083	.	C	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.46;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1740,186,0
chrVI	164557	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1597,186,0
chrVI	164883	.	G	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1733,189,0
chrVI	165111	.	A	G	1894	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.97;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1927,216,0
chrVI	165798	.	A	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0284;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.22;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1651,183,0
chrVI	166074	.	A	G	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=50;Dels=0.00;FS=4.025;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.444;QD=19.54;ReadPosRankSum=1.660;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,47:50:99:1010,117,0
chrVI	166669	.	C	T	3203	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-1.810e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:3236,351,0
chrVI	167265	.	C	T	852	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.04;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:885,96,0
chrVI	167366	.	C	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=19.45;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1686,183,0
chrVI	167402	.	C	T	702	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=16.71;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:735,81,0
chrVI	167403	.	C	G	652	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=15.52;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:685,78,0
chrVI	167410	.	A	G	633	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=42;Dels=0.00;FS=2.955;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;MQRankSum=1.270;QD=15.07;ReadPosRankSum=2.333;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:2,40:42:75:666,75,0
chrVI	167598	.	T	C	830	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=20.24;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:96:863,96,0
chrVI	167610	.	C	A	790	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.78;MQ0=0;QD=21.94;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:90:823,90,0
chrVI	167615	.	G	A	767	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=21.91;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:87:800,87,0
chrVI	167647	.	A	G	344	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=17.20;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:45:377,45,0
chrVI	167682	.	G	C	408	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=17.74;SB=-6.586e-03	GT:AD:DP:GQ:PL	1/1:0,22:23:51:441,51,0
chrVI	168102	.	T	A	701	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=18.95;SB=-7.401e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:81:734,81,0
chrVI	168104	.	T	C	674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-0.360;QD=17.74;ReadPosRankSum=2.321;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:2,36:38:81:707,81,0
chrVI	168202	.	T	C	965	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.56;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:998,111,0
chrVI	168241	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=18.82;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1539,174,0
chrVI	168408	.	G	C	723	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=10.33;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:90:756,90,0
chrVI	168422	.	C	T	1011	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=15.32;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1044,114,0
chrVI	168596	.	C	T	1198	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.36;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1231,138,0
chrVI	168728	.	A	G	1409	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=20.42;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1442,159,0
chrVI	168984	.	T	C	751	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=15.65;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:784,93,0
chrVI	169240	.	A	G	1103	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.70;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1136,132,0
chrVI	169392	.	A	G	1557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.507;QD=19.96;ReadPosRankSum=1.687;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1590,180,0
chrVI	169591	.	T	C	1984	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.80;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2017,228,0
chrVI	169635	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=17.39;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2068,231,0
chrVI	169649	.	T	G	1758	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.2528;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=16.13;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:1791,207,0
chrVI	169872	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.13;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2106,240,0
chrVI	169900	.	A	C	1681	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.68;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1714,198,0
chrVI	169942	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=7.436;HaplotypeScore=5.6423;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.945;QD=19.97;ReadPosRankSum=2.354;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1571,180,0
chrVI	170423	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.07;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1600,180,0
chrVI	170473	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.95;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1679,183,0
chrVI	170689	.	A	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.31;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1711,192,0
chrVI	170794	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.85;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1363,153,0
chrVI	171023	.	A	G	1442	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.73;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,73:77:99:1475,165,0
chrVI	171103	.	G	T	1218	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.75;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1251,138,0
chrVI	171241	.	C	T	2206	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.4965;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.35;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2239,246,0
chrVI	171355	.	G	A	2476	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.27;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2509,270,0
chrVI	171376	.	A	G	2023	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.25;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2056,234,0
chrVI	171434	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.37;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1398,153,0
chrVI	171501	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.58;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1365,150,0
chrVI	172612	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.61;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1243,138,0
chrVI	172905	.	T	C	1013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.364;QD=21.10;ReadPosRankSum=1.585;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:1046,120,0
chrVI	173376	.	G	A	1938	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.53;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1971,213,0
chrVI	173398	.	C	T	1812	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.10;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1845,198,0
chrVI	173500	.	C	T	2044	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2077,225,0
chrVI	173599	.	C	T	1730	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.36;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1763,195,0
chrVI	173765	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=17.00;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1291,147,0
chrVI	173916	.	T	A	2829	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.5159;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.305;QD=19.92;ReadPosRankSum=1.682;SB=-1.441e+03	GT:AD:DP:GQ:PL	1/1:1,141:142:99:2862,312,0
chrVI	174110	.	C	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=100.1942;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=16.83;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:1800,204,0
chrVI	174484	.	A	G	2101	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.10;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2134,243,0
chrVI	174519	.	G	A	1962	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.82;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1995,219,0
chrVI	174556	.	C	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.20;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1787,198,0
chrVI	174682	.	G	A	1764	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.29;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1797,198,0
chrVI	174712	.	G	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.59;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1360,150,0
chrVI	174951	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.37;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1466,165,0
chrVI	175060	.	T	C	1702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=82;Dels=0.00;FS=2.984;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.076;QD=20.76;ReadPosRankSum=2.389;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:2,79:82:99:1735,198,0
chrVI	175077	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.44;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1566,177,0
chrVI	175153	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.18;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1506,168,0
chrVI	175342	.	C	A	905	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=15.88;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:938,105,0
chrVI	175522	.	C	T	1762	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.02;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1795,198,0
chrVI	175576	.	G	A	1229	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.82;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1262,141,0
chrVI	175594	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=16.08;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:99:982,111,0
chrVI	175597	.	G	A	951	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=16.40;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:984,111,0
chrVI	176167	.	C	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.09;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1861,207,0
chrVI	176340	.	T	C	499	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=15.12;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:60:532,60,0
chrVI	176410	.	G	T	790	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=9.87;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:90:823,90,0
chrVI	176518	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.79;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1456,165,0
chrVI	176548	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.44;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1588,171,0
chrVI	176588	.	T	C	1065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.057;QD=16.38;ReadPosRankSum=2.336;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1098,126,0
chrVI	177249	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.89;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:981,111,0
chrVI	177337	.	C	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.19;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1103,120,0
chrVI	177366	.	T	C	1219	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5241;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.67;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1252,144,0
chrVI	177453	.	A	G	995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.080;DP=63;Dels=0.00;FS=8.781;HaplotypeScore=7.0924;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.160;QD=15.79;ReadPosRankSum=3.224;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:4,58:63:99:1028,117,0
chrVI	177516	.	G	A	1172	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1205,129,0
chrVI	177753	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.464;QD=19.86;ReadPosRankSum=1.683;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1443,159,0
chrVI	177798	.	G	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.55;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1343,147,0
chrVI	177890	.	C	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.89;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1178,126,0
chrVI	177999	.	T	C	716	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9687;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=12.79;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:749,84,0
chrVI	178043	.	T	C	467	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;QD=10.38;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:57:500,57,0
chrVI	178052	.	T	C	422	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;QD=9.81;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:51:455,51,0
chrVI	178054	.	A	T	416	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;QD=10.15;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:51:449,51,0
chrVI	178063	.	G	A	353	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.81;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:42:386,42,0
chrVI	178069	.	T	C	318	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.83;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:39:351,39,0
chrVI	178083	.	A	G	212.01	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.91;MQ0=0;QD=8.15;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:27:245,27,0
chrVI	178096	.	C	T	127.13	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;QD=8.48;SB=-2.813e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:18:160,18,0
chrVI	178184	.	T	C	97.26	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.95;SB=-9.926e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:15:130,15,0
chrVI	178193	.	T	C	266	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.67;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:33:299,33,0
chrVI	178195	.	A	T	270	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.86;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:33:303,33,0
chrVI	178204	.	G	A	384	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=13.24;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:45:417,45,0
chrVI	178210	.	T	C	401	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.86;MQ0=0;QD=12.94;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:48:434,48,0
chrVI	178224	.	A	G	477	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;QD=13.25;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:57:510,57,0
chrVI	178261	.	A	C	898	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=15.48;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:58:99:931,105,0
chrVI	178373	.	A	G	761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.995;QD=15.85;ReadPosRankSum=1.659;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:90:794,90,0
chrVI	178425	.	G	C	824	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=16.48;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:857,96,0
chrVI	178440	.	G	A	649	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=14.75;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:75:682,75,0
chrVI	178452	.	A	G	751	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=15.98;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:90:784,90,0
chrVI	178649	.	T	C	825	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=15.28;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:858,96,0
chrVI	178655	.	C	T	874	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=17.14;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:907,99,0
chrVI	179049	.	T	A	1616	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=20.20;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1649,183,0
chrVI	179606	.	G	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=18.57;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1203,138,0
chrVI	179773	.	G	C	1653	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.04;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1686,189,0
chrVI	179957	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=73;Dels=0.00;FS=3.030;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.051;QD=18.36;ReadPosRankSum=2.315;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1373,159,0
chrVI	179981	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.51;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1340,150,0
chrVI	180152	.	C	T	1409	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=18.30;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1442,159,0
chrVI	180546	.	T	C	1322	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.44;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:68:99:1355,153,0
chrVI	181692	.	A	G	2018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.725;QD=22.42;ReadPosRankSum=2.395;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:2051,225,0
chrVI	181733	.	T	G	2671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.982;QD=21.89;ReadPosRankSum=0.953;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:1,119:122:99:2704,306,0
chrVI	181817	.	A	G	3099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.737;DP=150;Dels=0.00;FS=11.356;HaplotypeScore=15.9197;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.069;QD=20.66;ReadPosRankSum=3.737;SB=-1.647e+03	GT:AD:DP:GQ:PL	1/1:5,144:150:99:3132,354,0
chrVI	182652	.	T	A	780	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=13.93;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:90:813,90,0
chrVI	183936	.	G	A	1679	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.53;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1712,192,0
chrVI	184083	.	G	A	1007	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.36;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1040,117,0
chrVI	184860	.	G	A	1893	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.0086;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.72;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1926,210,0
chrVI	185422	.	A	G	1840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=0.898;QD=16.88;ReadPosRankSum=1.668;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:1873,210,0
chrVI	185722	.	C	T	1807	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.44;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1840,207,0
chrVI	185806	.	C	T	2766	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.0613;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.44;SB=-1.610e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2799,306,0
chrVI	186097	.	G	A	672	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=12.92;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:78:705,78,0
chrVI	186433	.	T	C	783	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:816,93,0
chrVI	186589	.	T	C	926	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.05;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:99:959,108,0
chrVI	186667	.	T	C	952	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.64;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:985,111,0
chrVI	186748	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.95;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1227,135,0
chrVI	186886	.	T	C	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.174;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.449;QD=21.57;ReadPosRankSum=1.689;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1780,198,0
chrVI	186936	.	T	C	1703	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.02;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1736,201,0
chrVI	187015	.	A	C	1313	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1346,150,0
chrVI	187090	.	C	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1787,198,0
chrVI	187135	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.99;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1757,192,0
chrVI	187264	.	A	G	1298	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.97;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1331,147,0
chrVI	187666	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.69;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1254,141,0
chrVI	187771	.	G	A	966	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:999,108,0
chrVI	187801	.	C	T	1093	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1126,120,0
chrVI	188423	.	C	T	2017	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4610;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.16;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2050,228,0
chrVI	188858	.	T	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.00;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1755,201,0
chrVI	189096	.	G	A	2145	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2178,234,0
chrVI	189156	.	G	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.22;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1381,153,0
chrVI	189505	.	G	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.93;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1320,150,0
chrVI	189631	.	T	C	669	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:702,78,0
chrVI	189700	.	C	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.71;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1055,114,0
chrVI	189752	.	T	C	1273	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.87;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1306,147,0
chrVI	189811	.	C	T	921	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=18.06;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:954,105,0
chrVI	189828	.	A	C	768	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.07;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:801,90,0
chrVI	189847	.	G	A	667	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=14.50;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:78:700,78,0
chrVI	190129	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.195;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.083;QD=18.42;ReadPosRankSum=1.660;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:917,102,0
chrVI	190170	.	T	C	848	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.96;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:881,99,0
chrVI	190174	.	G	A	798	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=15.65;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:831,93,0
chrVI	190627	.	G	A	976	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.92;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1009,111,0
chrVI	190849	.	C	T	2200	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=13.9393;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.15;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2233,252,0
chrVI	191180	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.3813;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=19.51;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1945,213,0
chrVI	191409	.	A	T	2982	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-1.475;QD=21.45;ReadPosRankSum=1.706;SB=-1.569e+03	GT:AD:DP:GQ:PL	1/1:1,138:139:99:3015,324,0
chrVI	191439	.	G	A	2302	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=19.51;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2335,255,0
chrVI	191495	.	A	G	537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=32.4550;MLEAC=2;MLEAF=1.00;MQ=29.04;MQ0=0;MQRankSum=-2.396;QD=11.93;ReadPosRankSum=2.341;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:63:570,63,0
chrVI	191500	.	T	C	68.51	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=30.8777;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=1.85;SB=-2.105e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:12:101,12,0
chrVI	191636	.	G	A	1030	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=16.61;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1063,114,0
chrVI	191655	.	T	C	909	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=15.41;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,57:59:99:942,105,0
chrVI	191661	.	T	A	1058	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=17.34;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1091,117,0
chrVI	191671	.	G	T	996	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=16.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1029,111,0
chrVI	191674	.	T	C	930	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=15.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:963,108,0
chrVI	191680	.	C	T	968	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=16.13;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1001,108,0
chrVI	191687	.	A	G	1050	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.519;QD=16.15;ReadPosRankSum=1.679;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1083,123,0
chrVI	191827	.	T	C	120.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=35;Dels=0.00;FS=12.430;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=0;MQRankSum=-0.036;QD=3.43;ReadPosRankSum=1.883;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:2,33:35:18:153,18,0
chrVI	191836	.	C	T	264	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.28;MQ0=0;QD=6.60;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:0,40:40:33:297,33,0
chrVI	191847	.	G	T	299	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=6.64;SB=-8.701e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:36:332,36,0
chrVI	191856	.	A	C	378	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=8.22;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,46:46:48:411,48,0
chrVI	191860	.	T	C	450	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=9.37;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,48:48:54:483,54,0
chrVI	191880	.	T	C	573	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=10.61;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,54:54:69:606,69,0
chrVI	191885	.	G	A	626	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=11.38;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:72:659,72,0
chrVI	191914	.	T	C	462	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.64;MQ0=0;QD=10.27;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:57:495,57,0
chrVI	191930	.	G	A	279	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.90;MQ0=0;QD=8.72;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:0,32:32:33:312,33,0
chrVI	191945	.	T	C	286	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=8.17;SB=-8.701e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:36:319,36,0
chrVI	191963	.	G	C	300	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=8.11;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:39:333,39,0
chrVI	191994	.	G	T	293	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;QD=7.32;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:36:326,36,0
chrVI	192013	.	C	T	274	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=8.30;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:0,33:33:33:307,33,0
chrVI	192028	.	C	T	184.03	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=6.13;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,30:30:24:217,24,0
chrVI	192045	.	A	G	123.13	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=4.25;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,29:29:18:156,18,0
chrVI	192050	.	A	C	99.26	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=3.31;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:0,30:30:15:132,15,0
chrVI	192065	.	C	G	77.51	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.37;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,23:23:12:110,12,0
chrVI	192074	.	A	G	43.97	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.00;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,22:22:9:76,9,0
chrVI	192100	.	C	T	108.26	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.16;SB=-2.728e-01	GT:AD:DP:GQ:PL	1/1:0,21:21:15:141,15,0
chrVI	192104	.	A	G	123.13	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.86;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,21:21:18:156,18,0
chrVI	192122	.	G	A	135.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=-0.639;QD=7.11;ReadPosRankSum=1.552;SB=-2.212e+01	GT:AD:DP:GQ:PL	1/1:1,18:19:18:168,18,0
chrVI	192128	.	C	A	166.03	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.75;MQ0=0;QD=7.55;SB=-8.704e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:24:199,24,0
chrVI	192134	.	T	C	270	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=10.38;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:36:303,36,0
chrVI	192166	.	G	C	502	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=11.95;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:63:535,63,0
chrVI	192172	.	T	C	498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.499;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;MQRankSum=-1.511;QD=10.60;ReadPosRankSum=1.659;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:63:531,63,0
chrVI	192234	.	T	C	934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.150;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;MQRankSum=-1.679;QD=14.37;ReadPosRankSum=1.626;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:967,108,0
chrVI	192240	.	C	T	948	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=14.81;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:981,108,0
chrVI	192358	.	G	A	2177	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=22.21;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,96:98:99:2210,240,0
chrVI	192485	.	T	C	574	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=15.94;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:69:607,69,0
chrVI	192545	.	C	T	311	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=12.44;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:39:344,39,0
chrVI	192551	.	T	A	377	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=11.78;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:45:410,45,0
chrVI	192564	.	A	G	496	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.22;MQ0=0;QD=14.59;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:60:529,60,0
chrVI	192590	.	A	G	569	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=15.38;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:69:602,69,0
chrVI	192707	.	T	C	2327	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.81;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2360,261,0
chrVI	192732	.	T	C	2351	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.97;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,104:107:99:2384,267,0
chrVI	192850	.	A	C	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=10.295;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.223;QD=21.31;ReadPosRankSum=2.329;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1333,150,0
chrVI	192981	.	G	A	1347	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.22;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1380,150,0
chrVI	193000	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.96;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1437,159,0
chrVI	193023	.	G	A	1645	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.56;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1678,183,0
chrVI	193272	.	C	T	2381	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.25;SB=-1.374e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2414,261,0
chrVI	193303	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=14.82;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1411,159,0
chrVI	193326	.	G	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=14.21;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1070,120,0
chrVI	193556	.	G	C	3103	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.52;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,156:159:99:3136,363,0
chrVI	193671	.	C	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.56;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1585,180,0
chrVI	193734	.	T	C	2678	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=119;Dels=0.00;FS=6.131;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.399;QD=22.50;ReadPosRankSum=2.873;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:3,116:119:99:2711,303,0
chrVI	193872	.	T	A	3595.01	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=14.3177;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.90;SB=-1.676e+03	GT:AD:DP:GQ:PL	1/1:0,157:157:99:3595,402,0
chrVI	194072	.	A	G	3105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=157;Dels=0.00;FS=2.945;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.790;QD=19.78;ReadPosRankSum=2.418;SB=-1.653e+03	GT:AD:DP:GQ:PL	1/1:2,155:157:99:3138,357,0
chrVI	194081	.	C	T	2690	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=17.47;SB=-1.544e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:2723,300,0
chrVI	194154	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=14.03;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1380,165,0
chrVI	194162	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=15.70;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1697,192,0
chrVI	194187	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=12.43;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1313,150,0
chrVI	194193	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=102;Dels=0.00;FS=2.597;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-0.495;QD=11.36;ReadPosRankSum=2.931;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:3,99:102:99:1192,135,0
chrVI	194247	.	G	T	2009	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=17.17;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2042,225,0
chrVI	194306	.	C	A	3000	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=21.13;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,140:142:99:3033,330,0
chrVI	194319	.	C	T	3117	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.02;FS=0.000;HaplotypeScore=18.9745;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.64;SB=-1.549e+03	GT:AD:DP:GQ:PL	1/1:0,147:148:99:3150,345,0
chrVI	194540	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=21.77;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2101,240,0
chrVI	194593	.	G	T	2395	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.63;SB=-1.449e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2428,264,0
chrVI	196316	.	C	A	1233	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.68;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1266,141,0
chrVI	197402	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.16;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1250,141,0
chrVI	197486	.	A	T	1000	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.00;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1033,114,0
chrVI	197758	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=22.07;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1379,147,0
chrVI	197775	.	G	A	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=10.1365;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=1.370;QD=17.16;ReadPosRankSum=-0.440;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1217,138,0
chrVI	197849	.	G	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.81;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1800,204,0
chrVI	198089	.	C	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.84;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1858,207,0
chrVI	198092	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.570;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=-0.818;QD=19.07;ReadPosRankSum=1.694;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1768,204,0
chrVI	198116	.	T	C	1619	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.99;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1652,183,0
chrVI	198271	.	C	T	2204	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.33;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2237,246,0
chrVI	198275	.	G	T	2227	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.87;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2260,252,0
chrVI	198427	.	C	T	1467	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.34;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1500,165,0
chrVI	198446	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=87;Dels=0.00;FS=2.595;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=1.059;QD=15.33;ReadPosRankSum=2.871;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:3,83:87:99:1367,159,0
chrVI	198501	.	G	A	1078	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.7004;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=16.09;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1111,129,0
chrVI	198590	.	A	G	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.289;QD=16.28;ReadPosRankSum=1.675;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1010,117,0
chrVI	198602	.	G	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.23;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1309,153,0
chrVI	198638	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=-1.237;QD=19.15;ReadPosRankSum=1.650;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1642,180,0
chrVI	198689	.	C	T	1356	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=15.2476;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=15.95;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1389,153,0
chrVI	199107	.	C	T	3165	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=16.5129;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.44;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3198,357,0
chrVI	199207	.	G	A	1831	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.29;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1864,207,0
chrVI	199246	.	T	C	1491	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=16.94;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1524,177,0
chrVI	199313	.	A	C	2464	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.10;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2497,276,0
chrVI	199316	.	C	T	2667	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.68;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2700,288,0
chrVI	199373	.	C	T	3009	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.04;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:0,156:158:99:3042,333,0
chrVI	199469	.	C	A	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.097;DP=103;Dels=0.00;FS=12.442;HaplotypeScore=7.7189;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=0.898;QD=11.91;ReadPosRankSum=0.836;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:5,98:103:99:1260,141,0
chrVI	199471	.	A	C	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.037;DP=103;Dels=0.03;FS=3.054;HaplotypeScore=7.6586;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.112;QD=11.31;ReadPosRankSum=0.783;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:2,97:100:99:1198,130,0
chrVI	199558	.	A	T	2142	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.08;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2175,237,0
chrVI	199576	.	A	C	2385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=115;Dels=0.00;FS=5.384;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.246;QD=20.74;ReadPosRankSum=1.702;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,113:115:99:2418,273,0
chrVI	199828	.	G	C	3158	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5432;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.05;SB=-1.540e+03	GT:AD:DP:GQ:PL	1/1:0,134:137:99:3191,354,0
chrVI	199969	.	A	G	1378	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1411,156,0
chrVI	201675	.	A	G	749	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.21;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:93:782,93,0
chrVI	201899	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.89;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1216,129,0
chrVI	202941	.	C	T	779	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.90;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:90:812,90,0
chrVI	202970	.	A	G	1108	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1141,126,0
chrVI	203665	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.56;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1801,198,0
chrVI	203799	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=18.55;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1480,165,0
chrVI	203808	.	G	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.12;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1625,183,0
chrVI	203845	.	A	G	1438	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.17;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1471,168,0
chrVI	204006	.	G	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.95;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1330,150,0
chrVI	204095	.	G	C	1201	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.92;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1234,141,0
chrVI	204894	.	G	T	1376	filter	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=106.1341;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=20.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1409,156,0
chrVI	204997	.	G	T	399	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;QD=12.47;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:0,30:32:48:432,48,0
chrVI	205973	.	G	A	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=0.88;SB=-3.077e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:6:54,6,0
chrVI	205988	.	T	C	44.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.52;MQ0=0;MQRankSum=-1.897;QD=2.50;ReadPosRankSum=2.178;SB=-2.698e+01	GT:AD:DP:GQ:PL	1/1:2,16:18:9:77,9,0
chrVI	206167	.	G	T	1412	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.41;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1445,156,0
chrVI	206215	.	C	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=19.18;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1107,123,0
chrVI	206355	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=21.86;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1323,147,0
chrVI	206445	.	G	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.31;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1333,150,0
chrVI	206552	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.47;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1532,171,0
chrVI	206614	.	C	T	1168	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=14.97;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1201,135,0
chrVI	206615	.	C	T	1218	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=15.22;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1251,138,0
chrVI	206619	.	G	A	1226	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=14.60;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1259,138,0
chrVI	206706	.	C	T	1836	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.12;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1869,207,0
chrVI	206741	.	T	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.82;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1532,168,0
chrVI	206918	.	A	G	1959	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.79;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1992,228,0
chrVI	206984	.	A	G	2238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=1.231;QD=20.72;ReadPosRankSum=2.404;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:2,105:108:99:2271,258,0
chrVI	207041	.	C	T	1764	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.82;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1797,201,0
chrVI	207125	.	A	G	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=8.184;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.153;QD=23.70;ReadPosRankSum=1.688;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1905,213,0
chrVI	207192	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.84;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1325,147,0
chrVI	207236	.	A	T	1549	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.962;QD=21.51;ReadPosRankSum=1.684;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1582,171,0
chrVI	207279	.	G	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.24;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1345,147,0
chrVI	207357	.	G	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.00;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1185,132,0
chrVI	207374	.	G	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.26;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1457,165,0
chrVI	207456	.	A	G	2150	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.16;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2183,249,0
chrVI	207472	.	G	A	2051	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.54;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2084,228,0
chrVI	207604	.	C	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=18.97;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1380,159,0
chrVI	207607	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.6500;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.635;QD=19.38;ReadPosRankSum=1.586;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1409,156,0
chrVI	207679	.	A	C	820	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.64;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:853,99,0
chrVI	207700	.	G	A	937	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.12;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:970,108,0
chrVI	207745	.	C	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.12;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1406,162,0
chrVI	207856	.	A	G	795	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=2.966;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=0.117;QD=15.00;ReadPosRankSum=2.357;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:2,51:53:96:828,96,0
chrVI	207862	.	G	A	713	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=13.45;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:84:746,84,0
chrVI	207865	.	T	C	784	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=14.52;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:93:817,93,0
chrVI	208024	.	T	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.76;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1317,150,0
chrVI	208153	.	A	G	500	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.23;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:60:533,60,0
chrVI	208165	.	T	C	453	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=16.18;SB=-6.536e-03	GT:AD:DP:GQ:PL	1/1:0,25:28:57:486,57,0
chrVI	208427	.	A	T	683	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,29:30:81:716,81,0
chrVI	208611	.	C	T	937	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:99:970,111,0
chrVI	208668	.	T	C	804	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:93:837,93,0
chrVI	208971	.	G	A	1666	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1699,189,0
chrVI	209709	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.84;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1540,180,0
chrVI	210003	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.10;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1007,117,0
chrVI	210335	.	G	T	711	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.77;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:744,81,0
chrVI	210551	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.16;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1162,126,0
chrVI	210571	.	A	G	1057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.706;QD=19.57;ReadPosRankSum=1.668;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1090,123,0
chrVI	210730	.	T	C	937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=7.024;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.704;QD=18.37;ReadPosRankSum=2.354;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:970,108,0
chrVI	210954	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.00;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1314,150,0
chrVI	210967	.	C	G	973	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.69;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1006,117,0
chrVI	211652	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.923;DP=91;Dels=0.00;FS=11.941;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.589;QD=16.37;ReadPosRankSum=2.790;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:3,88:91:99:1523,171,0
chrVI	211683	.	T	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=16.65;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1415,159,0
chrVI	211826	.	T	C	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=6.541;HaplotypeScore=8.2900;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.660;QD=20.27;ReadPosRankSum=2.387;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1614,180,0
chrVI	212121	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.20;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1684,189,0
chrVI	212514	.	C	T	2190	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.8842;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.28;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2223,249,0
chrVI	212940	.	A	G	2926	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.40;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,158:159:99:2959,336,0
chrVI	213465	.	C	T	1603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.682;QD=23.23;ReadPosRankSum=1.331;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1636,177,0
chrVI	213825	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.32;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1232,132,0
chrVI	214157	.	G	A	1025	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=16.80;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1058,123,0
chrVI	215737	.	C	T	2521	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.0454;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.71;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2554,276,0
chrVI	219079	.	G	A	929	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.431;QD=19.77;ReadPosRankSum=-0.603;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:962,102,0
chrVI	221528	.	C	G	1350	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0411;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.15;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1383,153,0
chrVI	223266	.	T	G	2040	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.45;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2073,234,0
chrVI	223290	.	T	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.07;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1814,195,0
chrVI	223527	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.00;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2013,225,0
chrVI	225543	.	G	A	1957	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.58;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1990,222,0
chrVI	225899	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=17.21;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1289,147,0
chrVI	225913	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0964;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.73;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1588,177,0
chrVI	226036	.	G	C	1447	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.55;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1480,171,0
chrVI	226167	.	C	G	779	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=10.25;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:93:812,93,0
chrVI	226175	.	A	G	696	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=9.28;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:84:729,84,0
chrVI	226370	.	T	C	2031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=2.845;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=0.454;QD=21.38;ReadPosRankSum=2.398;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:2064,228,0
chrVI	226463	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=14.97;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1156,129,0
chrVI	226641	.	C	G	183.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=23.4079;MLEAC=1;MLEAF=0.500;MQ=41.59;MQ0=0;MQRankSum=0.238;QD=1.23;ReadPosRankSum=-8.424;SB=-2.390e+02	GT:AD:DP:GQ:PL	0/1:107,42:149:99:213,0,1287
chrVI	226791	.	G	A	789	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.15;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:822,90,0
chrVI	226796	.	A	G	755	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=15.41;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:90:788,90,0
chrVI	226804	.	C	A	847	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=15.98;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:880,96,0
chrVI	227025	.	T	C	1999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=2.638;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.640;QD=19.60;ReadPosRankSum=2.401;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:2032,237,0
chrVI	227223	.	G	T	682	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=16.24;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:715,78,0
chrVI	227471	.	A	G	621	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=15.3953;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.527;QD=10.18;ReadPosRankSum=1.657;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:75:654,75,0
chrVI	227500	.	C	T	81.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;DP=67;Dels=0.03;FS=86.107;HaplotypeScore=28.5101;MLEAC=1;MLEAF=0.500;MQ=50.74;MQ0=0;MQRankSum=0.747;QD=1.21;ReadPosRankSum=1.361;SB=-6.515e-03	GT:AD:DP:GQ:PL	0/1:38,27:65:83:111,0,83
chrVI	227503	.	A	T	42.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=70;Dels=0.03;FS=38.381;HaplotypeScore=29.0981;MLEAC=1;MLEAF=0.500;MQ=51.56;MQ0=0;MQRankSum=-2.076;QD=0.60;ReadPosRankSum=3.186;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,15:68:72:72,0,101
chrVI	227693	.	G	A	322	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=15.33;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,19:21:39:355,39,0
chrVI	228093	.	C	T	907	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.78;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:940,102,0
chrVI	228170	.	G	A	884	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2368;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=15.24;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:917,102,0
chrVI	228332	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.05;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1336,150,0
chrVI	228344	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.95;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1489,162,0
chrVI	228509	.	A	G	1027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.577;QD=18.02;ReadPosRankSum=1.672;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1060,123,0
chrVI	228515	.	A	G	1229	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.48;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1262,141,0
chrVI	228554	.	T	C	960	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.78;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:993,111,0
chrVI	228605	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=17.14;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1130,123,0
chrVI	228617	.	A	G	971	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=14.28;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1004,111,0
chrVI	228620	.	C	T	996	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=15.09;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1029,117,0
chrVI	229320	.	G	A	1752	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=19.91;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1785,195,0
chrVI	229337	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=16.76;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1575,168,0
chrVI	229349	.	G	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.05;FS=0.000;HaplotypeScore=9.6144;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=15.13;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1319,144,0
chrVI	229520	.	A	G	1332	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.49;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1365,156,0
chrVI	229526	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=12.240;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.417;QD=18.47;ReadPosRankSum=2.377;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1289,150,0
chrVI	229568	.	C	T	980	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=12.56;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1013,114,0
chrVI	229586	.	C	G	1177	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=12.93;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1210,141,0
chrVI	229757	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=16.04;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1108,126,0
chrVI	229802	.	G	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.6205;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.30;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1314,144,0
chrVI	229838	.	T	A	1862	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.233;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.217;QD=23.27;ReadPosRankSum=1.689;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1895,207,0
chrVI	229887	.	G	A	2314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;DP=129;Dels=0.00;FS=3.590;HaplotypeScore=11.5112;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.217;QD=17.94;ReadPosRankSum=0.650;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,127:129:99:2347,258,0
chrVI	229951	.	A	G	1511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=75;Dels=0.00;FS=5.617;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.311;QD=20.15;ReadPosRankSum=2.501;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1544,177,0
chrVI	230129	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.439;QD=18.95;ReadPosRankSum=1.674;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1151,126,0
chrVI	230195	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=3.393;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.397;QD=19.27;ReadPosRankSum=1.690;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1632,183,0
chrVI	230462	.	C	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1857,204,0
chrVI	230627	.	C	T	1164	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.16;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1197,132,0
chrVI	230891	.	G	A	1062	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.24;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1095,120,0
chrVI	230918	.	C	T	1083	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.83;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1116,129,0
chrVI	230993	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=3.057;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.183;QD=16.99;ReadPosRankSum=2.383;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1290,147,0
chrVI	231001	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.7739;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=15.01;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1324,147,0
chrVI	231077	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.80;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1302,147,0
chrVI	231098	.	G	A	1306	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.06;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1339,150,0
chrVI	231278	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.19;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1409,159,0
chrVI	231344	.	T	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.40;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1229,144,0
chrVI	231638	.	G	A	2009	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.32;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2042,219,0
chrVI	231666	.	T	A	1865	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.69;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1898,204,0
chrVI	231713	.	T	C	1950	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.67;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1983,228,0
chrVI	231775	.	A	G	1691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.023;QD=22.55;ReadPosRankSum=-0.762;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1724,172,0
chrVI	231902	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.79;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1311,147,0
chrVI	232279	.	A	T	2461	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.59;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2494,276,0
chrVI	232619	.	G	A	3159	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.79;SB=-1.745e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3192,354,0
chrVI	232697	.	T	C	1916	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.38;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1949,225,0
chrVI	233077	.	A	G	940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.466;QD=10.33;ReadPosRankSum=1.428;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:973,114,0
chrVI	233456	.	C	T	1077	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5587;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.12;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:51:99:1110,123,0
chrVI	233790	.	C	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.16;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1505,171,0
chrVI	233915	.	C	G	1376	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.72;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1409,159,0
chrVI	234085	.	G	C	1757	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.67;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1790,201,0
chrVI	234160	.	G	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.24;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1939,216,0
chrVI	234233	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.32;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1568,180,0
chrVI	234355	.	A	G	2512	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=24.39;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2545,285,0
chrVI	234388	.	A	G	1883	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=3.060;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.249;QD=22.42;ReadPosRankSum=2.333;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1916,216,0
chrVI	234585	.	A	G	1477	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.69;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1510,168,0
chrVI	234589	.	T	A	1669	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=22.25;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1702,186,0
chrVI	234593	.	T	C	1523	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=19.78;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1556,174,0
chrVI	234694	.	A	G	2121	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.340;QD=19.64;ReadPosRankSum=1.700;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2154,243,0
chrVI	234904	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4814;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=18.49;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:57:99:1087,126,0
chrVI	234914	.	G	A	1214	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.23;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1247,138,0
chrVI	235072	.	T	C	1322	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.39;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1355,153,0
chrVI	235321	.	A	G	1817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=-0.632;QD=21.38;ReadPosRankSum=1.651;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1850,207,0
chrVI	235342	.	A	G	2154	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.71;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2187,246,0
chrVI	235446	.	G	A	1881	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.51;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1914,210,0
chrVI	235489	.	C	T	1897	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.58;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1930,216,0
chrVI	236008	.	G	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.66;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1506,162,0
chrVI	236173	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1960,216,0
chrVI	236260	.	G	T	998	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.82;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1031,117,0
chrVI	236281	.	A	G	1051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=4.412;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.777;QD=18.12;ReadPosRankSum=1.673;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1084,123,0
chrVI	236578	.	G	A	1949	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.42;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1982,216,0
chrVI	237141	.	G	A	313	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=81.4439;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=2.72;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,115:115:39:346,39,0
chrVI	237463	.	T	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.23;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1446,156,0
chrVI	237962	.	G	A	2223	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=19.16;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2256,243,0
chrVI	237965	.	G	A	2039	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.58;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2072,228,0
chrVI	238213	.	C	A	1792	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.60;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1825,198,0
chrVI	238446	.	C	T	2626	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.64;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2659,291,0
chrVI	238465	.	G	T	1904	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.39;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1937,210,0
chrVI	238503	.	T	C	1475	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.21;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1508,171,0
chrVI	238621	.	A	G	2849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=148;Dels=0.00;FS=2.535;HaplotypeScore=14.7150;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.336;QD=19.25;ReadPosRankSum=2.952;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:3,144:148:99:2882,327,0
chrVI	238704	.	C	T	2024	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.19;SB=-1.508e+03	GT:AD:DP:GQ:PL	1/1:0,123:125:99:2057,222,0
chrVI	238707	.	A	G	2049	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=126;Dels=0.00;FS=3.011;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.710;QD=16.26;ReadPosRankSum=2.390;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:2,121:126:99:2082,234,0
chrVI	238769	.	C	G	2926	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=19.38;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:2959,330,0
chrVI	238877	.	A	C	1970	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.96;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2003,231,0
chrVI	238901	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.890;DP=64;Dels=0.00;FS=6.179;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-0.286;QD=19.78;ReadPosRankSum=2.890;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:99:1299,150,0
chrVI	239066	.	C	T	3186	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=157;Dels=0.00;FS=5.276;HaplotypeScore=11.0653;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=0.145;QD=20.29;ReadPosRankSum=0.101;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:1,155:157:99:3219,345,0
chrVI	239277	.	T	A	959	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.12;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:992,114,0
chrVI	239360	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.732;QD=18.14;ReadPosRankSum=1.689;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1484,165,0
chrVI	239478	.	G	A	1322	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.66;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1355,147,0
chrVI	239489	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.15;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1335,153,0
chrVI	239530	.	G	A	1227	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.11;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1260,138,0
chrVI	239639	.	C	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.99;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1372,156,0
chrVI	239766	.	A	G	973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.485;QD=19.46;ReadPosRankSum=1.663;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1006,117,0
chrVI	239828	.	G	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.45;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1084,117,0
chrVI	239854	.	T	C	997	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.46;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1030,120,0
chrVI	239986	.	G	A	2691	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.42;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2724,294,0
chrVI	240289	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.05;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,98:101:99:1856,207,0
chrVI	240352	.	G	C	1949	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.30;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1982,228,0
chrVI	240610	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=14.52;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:991,111,0
chrVI	240613	.	G	A	963	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=14.82;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:996,111,0
chrVI	241183	.	C	T	2145	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.62;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2178,240,0
chrVI	241627	.	C	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.19;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1261,144,0
chrVI	241694	.	T	C	700	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.50;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:733,81,0
chrVI	241696	.	A	G	694	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=16.14;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:84:727,84,0
chrVI	241803	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.24;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1288,138,0
chrVI	241821	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.72;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1315,147,0
chrVI	241871	.	G	T	1509	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=17.96;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1542,171,0
chrVI	241949	.	T	C	2383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.9075;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.747;QD=23.36;ReadPosRankSum=1.698;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2416,267,0
chrVI	241984	.	G	C	2118	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.4168;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.84;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2151,243,0
chrVI	242528	.	G	T	2076	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.59;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2109,234,0
chrVI	242595	.	C	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1417,162,0
chrVI	242717	.	C	T	2730	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.7425;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.56;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2763,306,0
chrVI	242843	.	C	G	2227	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.40;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2260,261,0
chrVI	242888	.	A	G	1895	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.1982;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.38;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1928,222,0
chrVI	244712	.	A	G	1193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.112;DP=74;Dels=0.00;FS=2.835;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.842;QD=16.12;ReadPosRankSum=2.382;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:2,71:74:99:1226,138,0
chrVI	245484	.	T	G	1118	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=59;Dels=0.00;FS=5.508;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.843;QD=18.95;ReadPosRankSum=2.879;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:3,55:59:99:1151,129,0
chrVI	245505	.	C	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.23;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1278,138,0
chrVI	245578	.	T	A	1058	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1091,117,0
chrVI	245636	.	G	A	628	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=16.97;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:661,72,0
chrVI	245661	.	G	A	742	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.26;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:775,84,0
chrVI	246893	.	A	G	1928	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5386;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.28;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1961,219,0
chrVI	248774	.	C	A	2976	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3009,336,0
chrVI	249566	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.157;QD=20.52;ReadPosRankSum=1.680;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1387,156,0
chrVI	253673	.	T	G	1494	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.92;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1527,174,0
chrVI	253709	.	T	G	1149	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.24;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1182,135,0
chrVI	253758	.	G	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.87;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1349,147,0
chrVI	254126	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1471,159,0
chrVI	254401	.	T	C	2039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=104;Dels=0.00;FS=4.108;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.261;QD=19.61;ReadPosRankSum=1.698;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2072,231,0
chrVI	255999	.	A	G	810	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.89;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:843,96,0
chrVI	257096	.	T	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1360,156,0
chrVI	258551	.	C	A	2297	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.20;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2330,255,0
chrVI	259369	.	G	A	1842	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.02;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1875,213,0
chrVI	259953	.	T	A	1664	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.89;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1697,186,0
chrVI	262022	.	T	C	2396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1297;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.322;QD=21.20;ReadPosRankSum=1.701;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2429,270,0
chrVI	262451	.	T	C	2220	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9320;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2253,255,0
chrVI	263080	.	C	T	2891	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.76;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2924,318,0
chrVI	264371	.	C	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.43;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1558,171,0
chrVI	265082	.	C	T	862	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.16;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:895,99,0
chrVI	265851	.	G	T	2440	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.98;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2473,264,0
chrVI	265986	.	T	C	2285	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2318,264,0
chrVI	266145	.	T	C	1759	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.69;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,82:85:99:1792,204,0
chrVI	266412	.	G	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.6854;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.86;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1514,165,0
chrVI	267147	.	C	A	1200	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9429;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.69;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1233,135,0
chrVI	267230	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.08;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1718,183,0
chrVI	267480	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.13;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1121,126,0
chrVI	267531	.	A	T	1108	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.982;QD=18.47;ReadPosRankSum=1.559;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1141,123,0
chrVI	267633	.	G	T	1535	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.26;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1568,168,0
chrVI	267781	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.247;QD=19.40;ReadPosRankSum=1.694;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1798,201,0
chrVI	267785	.	G	A	1709	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=17.62;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1742,186,0
chrVI	268109	.	T	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.53;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1429,162,0
chrVI	268167	.	C	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=12.4136;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.33;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1440,162,0
chrVI	268487	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.48;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1449,153,0
chrVI	268516	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.11;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1156,129,0
chrVI	268532	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.10;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1155,129,0
chrVI	268899	.	G	A	2148	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.2883;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.85;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2181,237,0
chrVI	269316	.	T	A	2749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.892;QD=20.83;ReadPosRankSum=1.653;SB=-1.562e+03	GT:AD:DP:GQ:PL	1/1:1,131:132:99:2782,312,0
chrVI	269633	.	A	G	2602	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.98;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2635,294,0
chrVI	269754	.	T	A	4855.01	PASS	AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.40;SB=-1.702e+03	GT:AD:DP:GQ:PL	1/1:0,199:199:99:4855,522,0
chrVII	364	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=19.10;MQ0=0;QD=0.46;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,26:26:6:43,6,0
chrVII	378	.	G	C	32.97	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=0;QD=1.10;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,30:30:9:65,9,0
chrVII	379	.	C	T	32.97	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=0;QD=1.10;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,30:30:9:65,9,0
chrVII	401	.	C	A	168.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=3;QD=3.23;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:3,49:52:27:201,27,0
chrVII	402	.	G	T	167.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=20.64;MQ0=3;QD=3.21;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:3,49:52:27:200,27,0
chrVII	403	.	G	T	77.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.271;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=4;MQRankSum=-0.214;QD=1.45;ReadPosRankSum=-0.243;SB=-6.842e-03	GT:AD:DP:GQ:PL	0/1:10,43:53:38:107,0,38
chrVII	404	.	T	G	166.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=20.21;MQ0=4;MQRankSum=1.286;QD=3.02;ReadPosRankSum=2.354;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:5,50:55:27:199,27,0
chrVII	461	.	C	T	336.41	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.404;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.8675;MLEAC=2;MLEAF=1.00;MQ=18.92;MQ0=15;MQRankSum=-0.404;QD=3.78;ReadPosRankSum=-0.098;SB=-2.623e+01	GT:AD:DP:GQ:PL	1/1:7,82:89:13:369,13,0
chrVII	466	.	A	C	411	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.481;DP=90;Dels=0.00;FS=15.378;HaplotypeScore=3.7350;MLEAC=2;MLEAF=1.00;MQ=18.67;MQ0=16;MQRankSum=1.080;QD=4.57;ReadPosRankSum=-0.477;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:3,83:90:54:444,54,0
chrVII	501	.	A	G	371.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.969;DP=109;Dels=0.00;FS=74.632;HaplotypeScore=3.5715;MLEAC=2;MLEAF=1.00;MQ=16.49;MQ0=19;MQRankSum=-0.186;QD=3.41;ReadPosRankSum=2.958;SB=-2.398e+01	GT:AD:DP:GQ:PL	1/1:24,85:109:9:404,9,0
chrVII	520	.	T	G	401	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.774;DP=118;Dels=0.00;FS=23.335;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=15.71;MQ0=15;MQRankSum=-0.725;QD=3.40;ReadPosRankSum=1.750;SB=-1.601e+01	GT:AD:DP:GQ:PL	1/1:6,112:118:51:434,51,0
chrVII	574	.	T	C	196.09	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;DP=87;Dels=0.00;FS=89.277;HaplotypeScore=6.0151;MLEAC=1;MLEAF=0.500;MQ=20.65;MQ0=7;MQRankSum=2.658;QD=2.25;ReadPosRankSum=3.940;SB=-3.102e+00	GT:AD:DP:GQ:PL	0/1:24,63:87:14:226,0,14
chrVII	575	.	C	G	193.14	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;DP=85;Dels=0.00;FS=63.297;HaplotypeScore=6.0151;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=6;MQRankSum=2.664;QD=2.27;ReadPosRankSum=4.654;SB=-2.215e+01	GT:AD:DP:GQ:PL	0/1:18,67:85:12:223,0,12
chrVII	595	.	T	C	147.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=1;MQRankSum=0.542;QD=2.33;ReadPosRankSum=2.364;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:2,56:63:21:180,21,0
chrVII	603	.	T	C	190.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.60;MQ0=1;MQRankSum=0.346;QD=3.73;ReadPosRankSum=1.663;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:1,49:51:27:223,27,0
chrVII	607	.	C	T	190.01	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.33;MQ0=0;QD=4.42;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,43:43:27:223,27,0
chrVII	641	.	G	A	363	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.96;MQ0=0;QD=6.72;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,54:54:45:396,45,0
chrVII	661	.	A	G	416	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=0;QD=7.43;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:51:449,51,0
chrVII	663	.	G	A	431	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=0;QD=7.70;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:51:464,51,0
chrVII	673	.	T	A	679	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=1;MQRankSum=-1.187;QD=7.54;ReadPosRankSum=1.654;SB=-2.380e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:84:712,84,0
chrVII	680	.	T	C	799	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.3006;MLEAC=2;MLEAF=1.00;MQ=25.85;MQ0=1;MQRankSum=-0.809;QD=7.54;ReadPosRankSum=2.379;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:2,104:106:96:832,96,0
chrVII	683	.	T	A	847	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.673;DP=115;Dels=0.01;FS=5.605;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=2;MQRankSum=1.623;QD=7.37;ReadPosRankSum=3.002;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:5,109:114:65:880,65,0
chrVII	688	.	A	G	940.76	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.931;DP=142;Dels=0.00;FS=17.582;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=2;MQRankSum=2.644;QD=6.63;ReadPosRankSum=3.371;SB=-6.568e+02	GT:AD:DP:GQ:PL	1/1:9,133:142:6:972,6,0
chrVII	2086	.	G	A	1979	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.70;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2012,213,0
chrVII	2250	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.24;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1450,159,0
chrVII	2283	.	C	A	1312	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1345,144,0
chrVII	3473	.	G	A	1163	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1196,123,0
chrVII	3709	.	C	A	2267	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2300,234,0
chrVII	4504	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.18;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1062,114,0
chrVII	4516	.	C	T	1089	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.78;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1122,117,0
chrVII	5016	.	C	T	1804	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.84;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1837,192,0
chrVII	5092	.	C	A	1810	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.55;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1843,192,0
chrVII	5754	.	A	C	1611	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.65;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1644,180,0
chrVII	6410	.	A	G	231.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.232;DP=158;Dels=0.00;FS=34.802;HaplotypeScore=9.6702;MLEAC=1;MLEAF=0.500;MQ=29.07;MQ0=7;MQRankSum=-2.928;QD=1.46;ReadPosRankSum=0.163;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:128,29:158:99:261,0,2381
chrVII	6697	.	A	G	441.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.017;DP=261;Dels=0.00;FS=13.194;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=41.53;MQ0=0;MQRankSum=-7.542;QD=1.69;ReadPosRankSum=1.784;SB=-1.610e+02	GT:AD:DP:GQ:PL	0/1:206,55:261:99:471,0,3512
chrVII	6712	.	T	C	492.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=272;Dels=0.00;FS=3.545;HaplotypeScore=41.9461;MLEAC=1;MLEAF=0.500;MQ=42.64;MQ0=0;MQRankSum=-7.745;QD=1.81;ReadPosRankSum=1.163;SB=-2.000e+02	GT:AD:DP:GQ:PL	0/1:215,55:272:99:522,0,3338
chrVII	6763	.	T	C	281.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;DP=168;Dels=0.00;FS=16.413;HaplotypeScore=14.9929;MLEAC=1;MLEAF=0.500;MQ=44.68;MQ0=0;MQRankSum=-6.853;QD=1.67;ReadPosRankSum=2.197;SB=-5.401e+01	GT:AD:DP:GQ:PL	0/1:132,35:168:99:311,0,2422
chrVII	6822	.	C	T	180.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;DP=148;Dels=0.00;FS=0.750;HaplotypeScore=34.3044;MLEAC=1;MLEAF=0.500;MQ=36.87;MQ0=8;MQRankSum=-3.770;QD=1.22;ReadPosRankSum=-0.267;SB=-3.501e+01	GT:AD:DP:GQ:PL	0/1:109,36:148:99:210,0,1262
chrVII	7009	.	T	C	92.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.427;DP=107;Dels=0.00;FS=41.734;HaplotypeScore=11.8011;MLEAC=1;MLEAF=0.500;MQ=33.17;MQ0=1;MQRankSum=-2.031;QD=0.86;ReadPosRankSum=-2.844;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,23:107:99:122,0,1442
chrVII	7016	.	G	T	46.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.204;DP=108;Dels=0.00;FS=25.076;HaplotypeScore=15.5619;MLEAC=1;MLEAF=0.500;MQ=31.31;MQ0=1;MQRankSum=-1.400;QD=0.43;ReadPosRankSum=-2.153;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:87,21:108:76:76,0,1354
chrVII	7020	.	C	A	98.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.054;DP=102;Dels=0.00;FS=39.004;HaplotypeScore=16.3506;MLEAC=1;MLEAF=0.500;MQ=30.77;MQ0=0;MQRankSum=-1.200;QD=0.96;ReadPosRankSum=-0.861;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,21:102:99:128,0,1321
chrVII	7021	.	A	G	88.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;DP=102;Dels=0.00;FS=39.004;HaplotypeScore=16.3506;MLEAC=1;MLEAF=0.500;MQ=30.77;MQ0=0;MQRankSum=-0.828;QD=0.86;ReadPosRankSum=-0.579;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,21:102:99:118,0,1359
chrVII	7026	.	C	G	42.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=102;Dels=0.00;FS=28.926;HaplotypeScore=14.0183;MLEAC=1;MLEAF=0.500;MQ=30.72;MQ0=0;MQRankSum=-1.392;QD=0.41;ReadPosRankSum=0.928;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:83,19:102:72:72,0,1384
chrVII	7027	.	T	G	106.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;DP=103;Dels=0.00;FS=37.832;HaplotypeScore=10.2518;MLEAC=1;MLEAF=0.500;MQ=30.77;MQ0=0;MQRankSum=-1.201;QD=1.03;ReadPosRankSum=0.400;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:80,23:103:99:136,0,1356
chrVII	7378	.	A	G	447.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.564;DP=106;Dels=0.00;FS=2.954;HaplotypeScore=4.1336;MLEAC=1;MLEAF=0.500;MQ=44.97;MQ0=1;MQRankSum=-0.366;QD=4.22;ReadPosRankSum=0.722;SB=-7.501e+01	GT:AD:DP:GQ:PL	0/1:72,34:106:99:477,0,1556
chrVII	7398	.	A	G	345.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.396;DP=106;Dels=0.00;FS=8.379;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=44.41;MQ0=1;MQRankSum=1.539;QD=3.25;ReadPosRankSum=2.171;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:81,25:106:99:375,0,1675
chrVII	7600	.	C	T	515.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;DP=100;Dels=0.00;FS=28.155;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=3;MQRankSum=-6.869;QD=5.15;ReadPosRankSum=0.956;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,37:100:99:545,0,1141
chrVII	7857	.	A	G	294.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.1389;MLEAC=1;MLEAF=0.500;MQ=27.94;MQ0=7;MQRankSum=-1.840;QD=3.54;ReadPosRankSum=-0.149;SB=-1.850e+02	GT:AD:DP:GQ:PL	0/1:54,29:83:99:324,0,651
chrVII	7948	.	A	G	1086.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;DP=94;Dels=0.00;FS=4.224;HaplotypeScore=8.0313;MLEAC=1;MLEAF=0.500;MQ=43.91;MQ0=14;MQRankSum=4.359;QD=11.55;ReadPosRankSum=-1.303;SB=-6.890e+02	GT:AD:DP:GQ:PL	0/1:27,66:94:99:1116,0,155
chrVII	7950	.	A	T	143.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=90;Dels=0.00;FS=6.531;HaplotypeScore=8.8200;MLEAC=1;MLEAF=0.500;MQ=44.92;MQ0=13;MQRankSum=-4.387;QD=1.59;ReadPosRankSum=1.724;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,26:90:99:173,0,1001
chrVII	8205	.	A	G	136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;DP=55;Dels=0.00;FS=4.625;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=44.38;MQ0=5;MQRankSum=-3.417;QD=2.47;ReadPosRankSum=2.440;SB=-6.501e+01	GT:AD:DP:GQ:PL	0/1:40,15:55:99:166,0,675
chrVII	8216	.	T	C	173.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DP=73;Dels=0.00;FS=3.621;HaplotypeScore=10.9094;MLEAC=1;MLEAF=0.500;MQ=47.38;MQ0=2;MQRankSum=-2.614;QD=2.37;ReadPosRankSum=1.551;SB=-1.110e+02	GT:AD:DP:GQ:PL	0/1:52,21:73:99:203,0,839
chrVII	9188	.	C	T	2451	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.03;FS=0.000;HaplotypeScore=31.3053;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=21.13;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2484,261,0
chrVII	9203	.	G	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=21.65;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2090,219,0
chrVII	9264	.	G	C	1834	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.31;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1867,201,0
chrVII	9285	.	G	T	1941	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=21.57;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1974,210,0
chrVII	9355	.	T	C	1176	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.97;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1209,132,0
chrVII	9425	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;QD=21.38;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1722,186,0
chrVII	9430	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=20.72;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1649,180,0
chrVII	9477	.	A	G	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=62.4389;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-1.334;QD=18.64;ReadPosRankSum=1.692;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1655,186,0
chrVII	9492	.	G	T	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=78;Dels=0.00;FS=10.744;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;MQRankSum=-0.364;QD=18.05;ReadPosRankSum=2.134;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1441,153,0
chrVII	9493	.	A	G	1378	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=17.44;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1411,156,0
chrVII	9524	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=19.17;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1643,177,0
chrVII	9589	.	T	G	1470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=79;Dels=0.00;FS=2.816;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=0.421;QD=18.61;ReadPosRankSum=2.388;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1503,162,0
chrVII	9659	.	A	G	654	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=14.53;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:687,75,0
chrVII	9663	.	C	T	609	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=15.62;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:72:642,72,0
chrVII	9664	.	T	C	586	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;MQRankSum=-1.111;QD=15.03;ReadPosRankSum=1.644;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:72:619,72,0
chrVII	9710	.	T	C	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.88;MQ0=0;MQRankSum=0.731;QD=18.69;ReadPosRankSum=1.655;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:96:874,96,0
chrVII	9720	.	A	G	939	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;QD=20.41;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:972,108,0
chrVII	9746	.	G	C	1049	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.30;MQ0=0;QD=21.41;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1082,117,0
chrVII	9795	.	C	G	607	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=18.97;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,31:32:69:640,69,0
chrVII	9800	.	T	C	525	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=16.41;SB=-4.701e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:63:558,63,0
chrVII	9815	.	A	T	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.994;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=51.7173;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;MQRankSum=1.362;QD=0.47;ReadPosRankSum=-3.015;SB=1.24	GT:AD:DP:GQ:PL	1/1:29,5:34:6:47,6,0
chrVII	9823	.	G	A	485	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=23.8804;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=15.16;SB=-4.801e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:54:518,54,0
chrVII	9841	.	T	C	684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.882;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;MQRankSum=-0.079;QD=15.55;ReadPosRankSum=1.654;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:81:717,81,0
chrVII	9859	.	G	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=20.03;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1235,135,0
chrVII	9885	.	T	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=22.15;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1894,204,0
chrVII	9915	.	A	G	2676	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=22.49;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2709,297,0
chrVII	10024	.	T	A	680	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=10.46;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:75:713,75,0
chrVII	10028	.	C	T	602	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=10.38;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:69:635,69,0
chrVII	10029	.	G	A	611	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=10.53;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:69:644,69,0
chrVII	10045	.	A	T	506	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=26.64;MQ0=0;MQRankSum=0.442;QD=9.92;ReadPosRankSum=1.664;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:60:539,60,0
chrVII	10048	.	A	G	454	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.104;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=0;MQRankSum=-0.111;QD=9.66;ReadPosRankSum=1.659;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:54:487,54,0
chrVII	10050	.	A	G	451	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=9.80;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:54:484,54,0
chrVII	10060	.	A	G	402	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=0;QD=9.35;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:48:435,48,0
chrVII	10064	.	A	G	335	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=9.05;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:42:368,42,0
chrVII	10088	.	C	T	210.01	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=12.8591;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=11.05;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:27:243,27,0
chrVII	10093	.	C	T	111.26	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=12.8591;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=7.42;SB=-8.026e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:15:144,15,0
chrVII	10135	.	G	A	127.13	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.72;MQ0=0;QD=10.59;SB=-7.911e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:18:160,18,0
chrVII	10154	.	G	C	210.01	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.59;MQ0=0;QD=15.00;SB=-9.902e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:27:243,27,0
chrVII	10166	.	G	A	397	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=16.54;SB=-1.240e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:48:430,48,0
chrVII	10182	.	T	G	501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=36;Dels=0.00;FS=14.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=-0.725;QD=13.92;ReadPosRankSum=2.314;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:2,34:36:60:534,60,0
chrVII	10191	.	T	C	630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=46;Dels=0.00;FS=11.954;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;MQRankSum=-1.589;QD=13.70;ReadPosRankSum=2.343;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:78:663,78,0
chrVII	10198	.	G	A	912	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.72;MQ0=0;QD=16.29;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:945,105,0
chrVII	10242	.	T	A	1436	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=18.89;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1469,159,0
chrVII	10243	.	T	C	1436	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;QD=18.65;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1469,159,0
chrVII	10302	.	G	A	1827	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=0;QD=19.23;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1860,201,0
chrVII	10310	.	T	C	1798	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=4.027;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.29;MQ0=0;MQRankSum=-0.971;QD=19.54;ReadPosRankSum=1.656;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1831,204,0
chrVII	10346	.	C	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=1;QD=19.91;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1526,168,0
chrVII	10386	.	T	A	188.03	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=23.25;MQ0=2;QD=8.95;SB=-8.102e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:24:221,24,0
chrVII	10396	.	G	C	178.03	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=2;QD=12.72;SB=-2.397e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:24:211,24,0
chrVII	10496	.	C	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=4.56;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:0,5:5:6:54,6,0
chrVII	10501	.	G	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=3.80;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:54,6,0
chrVII	10505	.	T	A	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=4.13;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:56,6,0
chrVII	10508	.	G	A	30.77	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=5.13;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:62,6,0
chrVII	10518	.	A	G	163.03	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=13.59;SB=-3.878e-02	GT:AD:DP:GQ:PL	1/1:0,12:12:24:196,24,0
chrVII	10538	.	T	C	339	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=15.41;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:45:372,45,0
chrVII	10545	.	C	T	394	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=16.42;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:51:427,51,0
chrVII	10597	.	A	G	517	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=15.67;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:66:550,66,0
chrVII	10613	.	T	A	513	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=13.86;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:60:546,60,0
chrVII	10615	.	C	T	503	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=0;QD=14.79;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:60:536,60,0
chrVII	10652	.	T	C	293	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=10.46;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:36:326,36,0
chrVII	10700	.	G	C	71.51	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=0;QD=4.47;SB=-1.145e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:12:104,12,0
chrVII	10705	.	G	C	74.51	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=1;QD=4.38;SB=-1.115e+02	GT:AD:DP:GQ:PL	1/1:0,16:17:12:107,12,0
chrVII	10728	.	C	T	105.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.77;MQ0=1;QD=5.01;SB=-2.313e+02	GT:AD:DP:GQ:PL	1/1:1,20:21:15:138,15,0
chrVII	10732	.	C	G	94.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.60;MQ0=1;QD=4.71;SB=-1.793e+02	GT:AD:DP:GQ:PL	1/1:1,19:20:15:127,15,0
chrVII	10736	.	A	C	99.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=1;QD=5.22;SB=-1.572e+02	GT:AD:DP:GQ:PL	1/1:1,18:19:15:132,15,0
chrVII	10891	.	A	G	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=25.63;MQ0=0;QD=1.87;SB=-2.374e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:6:48,6,0
chrVII	10975	.	T	A	296	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.21;MQ0=1;MQRankSum=-1.479;QD=7.05;ReadPosRankSum=1.648;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:1,41:42:39:329,39,0
chrVII	10982	.	A	T	349	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.9387;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=7.12;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:2,47:49:42:382,42,0
chrVII	10985	.	A	G	375	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.9387;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=0;MQRankSum=2.350;QD=7.65;ReadPosRankSum=2.147;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:2,47:49:48:408,48,0
chrVII	10988	.	A	C	417	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;MQRankSum=2.352;QD=8.34;ReadPosRankSum=1.956;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:2,48:50:51:450,51,0
chrVII	11008	.	G	A	414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6200;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;MQRankSum=2.195;QD=7.14;ReadPosRankSum=-0.618;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:2,56:58:48:447,48,0
chrVII	11014	.	A	G	302	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.051;DP=61;Dels=0.00;FS=13.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=1;MQRankSum=2.612;QD=4.95;ReadPosRankSum=0.170;SB=-8.701e-03	GT:AD:DP:GQ:PL	1/1:4,57:61:36:335,36,0
chrVII	11028	.	A	G	452	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.059;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=27.12;MQ0=1;MQRankSum=1.980;QD=7.06;ReadPosRankSum=-2.372;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:3,61:64:54:485,54,0
chrVII	11031	.	G	C	437	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=26.74;MQ0=2;MQRankSum=2.092;QD=6.72;ReadPosRankSum=-2.251;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:3,61:64:51:470,51,0
chrVII	11076	.	A	G	731	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.42;MQ0=3;QD=10.15;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:84:764,84,0
chrVII	11108	.	C	T	829	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=3;QD=12.75;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:90:862,90,0
chrVII	11149	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=59;Dels=0.00;FS=14.779;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=1;MQRankSum=1.001;QD=19.00;ReadPosRankSum=2.365;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1154,126,0
chrVII	11164	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=1;QD=20.67;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1149,123,0
chrVII	11208	.	T	C	871	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=20.74;SB=-1.780e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:904,102,0
chrVII	11217	.	T	C	688	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=19.11;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:721,81,0
chrVII	11253	.	C	T	543	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.33;MQ0=0;QD=15.08;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:63:576,63,0
chrVII	11256	.	T	A	592	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=13.77;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:66:625,66,0
chrVII	11286	.	C	T	1060	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=16.83;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1093,117,0
chrVII	11371	.	A	G	2033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5455;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;MQRankSum=0.448;QD=22.84;ReadPosRankSum=1.693;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2066,225,0
chrVII	11415	.	C	T	2285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.1282;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;MQRankSum=1.489;QD=19.53;ReadPosRankSum=0.608;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2318,255,0
chrVII	11454	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.5801;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=17.00;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1784,189,0
chrVII	11565	.	C	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=21.74;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1598,168,0
chrVII	11606	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.62;MQ0=0;QD=20.11;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1260,138,0
chrVII	11631	.	C	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=19.88;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1206,129,0
chrVII	11635	.	G	A	1171	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=18.02;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1204,129,0
chrVII	11691	.	G	A	1156	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=16.75;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1189,123,0
chrVII	11747	.	C	G	713	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=37.1665;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=13.71;SB=-1.010e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:84:746,84,0
chrVII	11758	.	A	T	75.51	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=44.3297;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=-1.732;QD=1.45;ReadPosRankSum=1.666;SB=-6.552e+01	GT:AD:DP:GQ:PL	1/1:1,51:52:12:108,12,0
chrVII	11760	.	G	T	64.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=78.0529;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=0;QD=1.26;SB=-6.552e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:12:97,12,0
chrVII	11768	.	T	C	658	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=46.3578;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=0;QD=11.54;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,56:57:78:691,78,0
chrVII	11806	.	G	A	653	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.39;MQ0=0;QD=11.87;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:72:686,72,0
chrVII	11826	.	T	G	712	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.22;MQ0=0;QD=12.71;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:81:745,81,0
chrVII	11838	.	G	A	727	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=35.31;MQ0=0;QD=11.73;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:81:760,81,0
chrVII	11900	.	T	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=20.53;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1347,150,0
chrVII	11908	.	C	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=0;QD=19.89;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1306,141,0
chrVII	11932	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;MQRankSum=-1.386;QD=21.10;ReadPosRankSum=1.675;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1299,153,0
chrVII	11980	.	G	A	598	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=13.91;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:631,75,0
chrVII	11990	.	A	T	545	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=0;QD=13.97;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:578,69,0
chrVII	12003	.	T	C	456	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.18;MQ0=0;QD=11.40;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:60:489,60,0
chrVII	12007	.	C	T	351	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=10.32;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:45:384,45,0
chrVII	12020	.	A	G	223	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=0;QD=7.96;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:30:256,30,0
chrVII	12025	.	A	G	254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.65;MQ0=0;MQRankSum=-1.200;QD=9.77;ReadPosRankSum=1.600;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:1,25:26:33:287,33,0
chrVII	12062	.	G	A	213.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=0;QD=11.21;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:27:246,27,0
chrVII	12067	.	C	T	208.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=12.24;SB=-1.220e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:27:241,27,0
chrVII	12072	.	A	G	209.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=0;MQRankSum=0.217;QD=13.06;ReadPosRankSum=1.519;SB=-7.602e+01	GT:AD:DP:GQ:PL	1/1:1,15:16:27:242,27,0
chrVII	12074	.	T	C	204.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=17;Dels=0.00;FS=11.335;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;MQRankSum=1.565;QD=12.00;ReadPosRankSum=2.162;SB=-8.302e+01	GT:AD:DP:GQ:PL	1/1:2,15:17:27:237,27,0
chrVII	12086	.	G	A	245	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;QD=11.14;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:33:278,33,0
chrVII	12101	.	C	T	221	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=0;QD=10.05;SB=-2.120e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:30:254,30,0
chrVII	12125	.	C	T	224	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.25;MQ0=0;QD=9.33;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:30:257,30,0
chrVII	12155	.	A	G	314	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=0;QD=8.49;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:42:347,42,0
chrVII	12165	.	G	C	385	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=34.6481;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;QD=8.95;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:51:418,51,0
chrVII	12180	.	A	G	403	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=8.06;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:51:436,51,0
chrVII	12185	.	C	T	375	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=7.98;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:48:408,48,0
chrVII	12186	.	A	G	375	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=7.98;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:48:408,48,0
chrVII	12187	.	T	C	375	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;QD=7.98;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:48:408,48,0
chrVII	12192	.	G	A	395	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=7.45;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:48:428,48,0
chrVII	12210	.	A	G	314	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=6.04;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:39:347,39,0
chrVII	12214	.	C	T	348	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=0;QD=6.96;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:42:381,42,0
chrVII	12231	.	T	C	259	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=0;QD=5.63;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:33:292,33,0
chrVII	12234	.	A	G	256	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;QD=5.69;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:33:289,33,0
chrVII	12259	.	T	G	208.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=7.17;SB=-1.540e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:27:241,27,0
chrVII	12260	.	C	G	222.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.00;MQ0=0;QD=7.66;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:27:255,27,0
chrVII	12263	.	A	G	204.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=6.80;SB=-1.520e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:27:237,27,0
chrVII	12269	.	C	T	211.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=6.59;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:27:244,27,0
chrVII	12277	.	A	G	229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=5.740;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;MQRankSum=1.155;QD=7.63;ReadPosRankSum=1.617;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:30:262,30,0
chrVII	12322	.	A	C	510	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.31;MQ0=0;QD=13.42;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:66:543,66,0
chrVII	12329	.	G	T	589	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=14.37;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:72:622,72,0
chrVII	12339	.	A	C	582	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=14.55;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:72:615,72,0
chrVII	12355	.	A	G	564	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.54;MQ0=0;QD=13.12;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:69:597,69,0
chrVII	12386	.	G	T	327	SnpCluster	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=10.90;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:42:360,42,0
chrVII	12387	.	T	A	328	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=11.71;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:42:361,42,0
chrVII	12388	.	G	T	329	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=11.75;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:42:362,42,0
chrVII	12396	.	T	A	313	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=8.94;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:42:346,42,0
chrVII	12436	.	G	C	188.01	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.67;MQ0=0;QD=5.53;SB=-8.702e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:27:221,27,0
chrVII	12448	.	A	G	163.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=5.09;SB=-8.704e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:24:196,24,0
chrVII	12454	.	T	C	184.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;MQRankSum=-1.083;QD=5.75;ReadPosRankSum=1.625;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:27:217,27,0
chrVII	12455	.	G	A	196.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.19;MQ0=0;QD=6.13;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:27:229,27,0
chrVII	12479	.	G	A	613	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;QD=13.04;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:72:646,72,0
chrVII	12505	.	G	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=34.53;MQ0=0;QD=17.30;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1175,129,0
chrVII	12524	.	A	T	1339	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=18.86;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1372,147,0
chrVII	12565	.	A	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=23.08;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1533,162,0
chrVII	12610	.	T	A	1367	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=22.41;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1400,147,0
chrVII	12663	.	T	C	2268	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=22.91;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2301,249,0
chrVII	12742	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=18.13;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1411,156,0
chrVII	12756	.	T	C	1042	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=16.54;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1075,123,0
chrVII	12769	.	A	G	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=9.870;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;MQRankSum=-0.382;QD=15.29;ReadPosRankSum=2.271;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:874,105,0
chrVII	12778	.	C	T	668	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;QD=13.92;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:701,84,0
chrVII	12793	.	C	T	728	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=14.56;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:90:761,90,0
chrVII	12853	.	G	A	836	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=18.58;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:869,96,0
chrVII	12857	.	C	T	853	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.64;MQ0=0;QD=17.77;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:886,96,0
chrVII	12874	.	A	G	725	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=16.48;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:758,87,0
chrVII	12884	.	T	C	781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.195;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;MQRankSum=0.144;QD=16.27;ReadPosRankSum=1.660;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:93:814,93,0
chrVII	12937	.	T	C	1154	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=18.92;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1187,129,0
chrVII	12940	.	T	C	1133	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=18.27;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1166,129,0
chrVII	12946	.	C	T	1139	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=18.67;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1172,126,0
chrVII	13009	.	T	C	1933	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=99;Dels=0.00;FS=5.153;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-1.076;QD=19.53;ReadPosRankSum=1.696;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,94:99:99:1966,219,0
chrVII	13045	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=19.12;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1620,177,0
chrVII	13050	.	T	C	1479	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=4.771;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=-1.466;QD=18.72;ReadPosRankSum=1.688;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1512,171,0
chrVII	13066	.	C	T	1383	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=18.20;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1416,159,0
chrVII	13105	.	A	G	1106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;MQRankSum=-0.487;QD=17.28;ReadPosRankSum=1.678;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1139,126,0
chrVII	13111	.	T	C	1038	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=18.54;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1071,120,0
chrVII	13120	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=18.98;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1134,126,0
chrVII	13185	.	C	T	761	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;QD=13.84;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:794,90,0
chrVII	13197	.	G	A	950	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=16.67;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:983,108,0
chrVII	13203	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;MQRankSum=-1.617;QD=16.20;ReadPosRankSum=1.675;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1005,114,0
chrVII	13216	.	T	C	1150	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=17.69;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1183,135,0
chrVII	13261	.	T	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=18.88;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1468,156,0
chrVII	13281	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.32;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1557,162,0
chrVII	13343	.	A	G	1418	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=22.87;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1451,156,0
chrVII	13446	.	A	G	1622	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.63;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1655,177,0
chrVII	13749	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.76;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1694,186,0
chrVII	14737	.	T	A	782	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=22.34;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:815,84,0
chrVII	14981	.	A	G	1030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=46;Dels=0.00;FS=3.647;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.472;QD=22.39;ReadPosRankSum=1.654;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,43:46:99:1063,114,0
chrVII	15008	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=25.64;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1392,144,0
chrVII	15244	.	A	G	2190	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.81;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2223,240,0
chrVII	15337	.	A	G	2208	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.38;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2241,237,0
chrVII	15420	.	C	G	2537	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.06;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,107:110:99:2570,273,0
chrVII	15437	.	T	C	2690	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;DP=120;Dels=0.00;FS=2.595;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.983;QD=22.42;ReadPosRankSum=2.891;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:3,117:120:99:2723,297,0
chrVII	15512	.	C	T	2131	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=20.49;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2164,231,0
chrVII	15518	.	C	T	1664	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=17.15;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1697,180,0
chrVII	15533	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=5.035;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.408;QD=17.79;ReadPosRankSum=1.698;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1848,192,0
chrVII	15557	.	A	G	2347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=1.099;QD=19.08;ReadPosRankSum=2.389;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:2,120:123:99:2380,258,0
chrVII	15596	.	A	G	2050	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.34;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2083,225,0
chrVII	15647	.	T	C	2553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=13.7123;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.536;QD=22.79;ReadPosRankSum=2.404;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:2,106:112:99:2586,279,0
chrVII	15689	.	T	C	2934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=-0.559;QD=23.66;ReadPosRankSum=1.676;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2967,315,0
chrVII	15770	.	T	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=14.97;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1425,156,0
chrVII	15803	.	C	T	1546	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=15.94;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1579,165,0
chrVII	15848	.	T	C	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.276;QD=19.39;ReadPosRankSum=1.632;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1371,150,0
chrVII	15887	.	C	T	1228	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=16.37;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1261,135,0
chrVII	15899	.	T	A	1039	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=16.49;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1072,114,0
chrVII	16079	.	T	C	2251	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=115;Dels=0.00;FS=6.609;HaplotypeScore=7.5188;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.353;QD=19.57;ReadPosRankSum=2.343;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:2,113:115:99:2284,246,0
chrVII	16087	.	T	G	2119	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.6689;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=18.92;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2152,234,0
chrVII	16175	.	A	C	3109	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=23.38;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,132:133:99:3142,348,0
chrVII	16202	.	A	C	3120	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=23.46;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3153,348,0
chrVII	16482	.	T	C	3121	SnpCluster	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.54;MQ0=0;QD=19.27;SB=-1.811e+03	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3154,345,0
chrVII	16485	.	A	G	3030	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=163;Dels=0.00;FS=7.503;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;MQRankSum=-0.837;QD=18.59;ReadPosRankSum=2.404;SB=-1.704e+03	GT:AD:DP:GQ:PL	1/1:2,161:163:99:3063,330,0
chrVII	16489	.	T	G	2928	SnpCluster	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=19.14;SB=-1.643e+03	GT:AD:DP:GQ:PL	1/1:0,153:153:99:2961,324,0
chrVII	16503	.	C	T	1991	SnpCluster	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=18.10;SB=-1.482e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2024,207,0
chrVII	16504	.	G	T	1868	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.64;MQ0=0;QD=17.46;SB=-1.407e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1901,201,0
chrVII	16509	.	T	C	1909	SnpCluster	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=17.20;SB=-1.516e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1942,207,0
chrVII	16556	.	C	T	917	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=12.92;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:950,102,0
chrVII	16563	.	A	G	808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;MQRankSum=0.917;QD=11.88;ReadPosRankSum=1.681;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:90:841,90,0
chrVII	16567	.	A	G	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;MQRankSum=0.477;QD=12.19;ReadPosRankSum=1.682;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:93:874,93,0
chrVII	16596	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=16.60;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1427,150,0
chrVII	16612	.	C	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=17.81;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1636,177,0
chrVII	16638	.	T	C	1840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=5.877;HaplotypeScore=80.7474;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;MQRankSum=0.448;QD=20.67;ReadPosRankSum=1.693;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1873,201,0
chrVII	16681	.	T	C	1890	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=22.50;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1923,213,0
chrVII	16762	.	C	A	1401	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=15.06;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1434,153,0
chrVII	16765	.	T	C	1412	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=7.584;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=1.329;QD=16.23;ReadPosRankSum=1.692;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1445,153,0
chrVII	16807	.	T	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=18.40;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1671,180,0
chrVII	16848	.	G	C	1475	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=19.41;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1508,162,0
chrVII	16905	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=21.15;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1175,132,0
chrVII	16946	.	T	A	1041	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=12.9987;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;QD=18.93;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1074,111,0
chrVII	16997	.	G	A	383	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=22.2297;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.21;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:45:416,45,0
chrVII	17017	.	C	T	314	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=7.9091;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=12.08;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:36:347,36,0
chrVII	17039	.	A	G	707	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=20.20;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:81:740,81,0
chrVII	17111	.	T	C	1867	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=22.23;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1900,204,0
chrVII	17166	.	G	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=19.61;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1680,180,0
chrVII	17176	.	T	C	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.03;MQ0=0;MQRankSum=0.339;QD=15.38;ReadPosRankSum=1.694;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1448,159,0
chrVII	17223	.	C	T	893	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.73;MQ0=0;QD=9.81;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:926,99,0
chrVII	17232	.	T	G	733	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=8.73;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:84:766,84,0
chrVII	17234	.	A	G	718	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=6.690;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;MQRankSum=-1.732;QD=8.55;ReadPosRankSum=1.691;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:81:751,81,0
chrVII	17240	.	C	A	741	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=8.72;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:81:774,81,0
chrVII	17260	.	G	A	745	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=10.35;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:84:778,84,0
chrVII	17261	.	C	T	752	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=10.44;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:84:785,84,0
chrVII	17265	.	C	T	752	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=8.85;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:81:785,81,0
chrVII	17289	.	G	C	584	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=7.39;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:66:617,66,0
chrVII	17299	.	G	A	531	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=6.17;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:60:564,60,0
chrVII	17314	.	A	C	624	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=6.86;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:75:657,75,0
chrVII	17321	.	T	A	720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.24;MQ0=0;MQRankSum=-2.249;QD=7.35;ReadPosRankSum=2.400;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:81:753,81,0
chrVII	17346	.	A	C	720	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=7.27;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:87:753,87,0
chrVII	17359	.	A	G	881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.242;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;MQRankSum=0.363;QD=10.01;ReadPosRankSum=0.886;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,85:88:99:914,108,0
chrVII	17393	.	T	G	1050	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=14.79;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1083,126,0
chrVII	17401	.	G	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.42;MQ0=0;QD=14.37;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1068,120,0
chrVII	17412	.	A	G	805	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=12.58;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:838,99,0
chrVII	17428	.	T	A	1272	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=19.87;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1305,141,0
chrVII	17611	.	G	A	3091	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=0;QD=21.92;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:3124,327,0
chrVII	17668	.	A	G	1790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=36.84;MQ0=0;MQRankSum=0.072;QD=18.65;ReadPosRankSum=1.624;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1823,207,0
chrVII	17711	.	C	T	1000	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=14.71;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1033,114,0
chrVII	17713	.	A	G	905	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=13.71;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:938,108,0
chrVII	17724	.	C	A	1103	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=13.96;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1136,126,0
chrVII	17785	.	G	C	1617	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;QD=17.39;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1650,180,0
chrVII	17798	.	A	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=19.33;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1541,159,0
chrVII	17843	.	A	C	570	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=18.39;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:66:603,66,0
chrVII	17856	.	G	C	532	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=16.12;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:63:565,63,0
chrVII	17862	.	T	A	559	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=16.44;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:592,66,0
chrVII	17866	.	A	C	541	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=16.91;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:63:574,63,0
chrVII	17874	.	T	G	497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.55;MQ0=0;MQRankSum=1.476;QD=18.41;ReadPosRankSum=-0.578;SB=-1.480e+02	GT:AD:DP:GQ:PL	1/1:1,26:27:60:530,60,0
chrVII	17888	.	T	C	606	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=16.83;SB=-1.210e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:69:639,69,0
chrVII	17897	.	A	T	681	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;QD=17.46;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:714,81,0
chrVII	17953	.	A	C	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;MQRankSum=-0.027;QD=21.24;ReadPosRankSum=-0.302;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1371,128,0
chrVII	17958	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=23.02;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1552,162,0
chrVII	18008	.	C	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=21.54;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1433,156,0
chrVII	18023	.	C	T	1430	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;QD=21.67;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1463,153,0
chrVII	18117	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.91;MQ0=0;QD=23.30;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1571,171,0
chrVII	18140	.	C	T	820	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=20.50;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:853,90,0
chrVII	18155	.	T	A	432	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=16.4306;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=16.00;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:54:465,54,0
chrVII	18158	.	T	G	457	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=16.32;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:57:490,57,0
chrVII	18197	.	G	A	787	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;QD=19.67;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:96:820,96,0
chrVII	18215	.	C	G	857	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=15.87;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:890,105,0
chrVII	18251	.	A	G	806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.181;DP=59;Dels=0.00;FS=14.139;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;MQRankSum=-0.256;QD=13.66;ReadPosRankSum=3.302;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:4,55:59:96:839,96,0
chrVII	18261	.	G	A	637	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=10.80;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:75:670,75,0
chrVII	18263	.	C	T	636	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=11.16;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:75:669,75,0
chrVII	18271	.	G	A	617	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=10.11;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:72:650,72,0
chrVII	18313	.	A	C	708	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=11.06;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:84:741,84,0
chrVII	18315	.	T	G	746	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;MQRankSum=-0.613;QD=11.48;ReadPosRankSum=1.679;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:87:779,87,0
chrVII	18342	.	C	T	742	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.30;MQ0=0;QD=10.45;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:87:775,87,0
chrVII	18346	.	C	T	797	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.25;MQ0=0;QD=11.07;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:90:830,90,0
chrVII	18380	.	A	G	793	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=65;Dels=0.00;FS=3.069;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;MQRankSum=-1.766;QD=12.20;ReadPosRankSum=1.007;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:93:826,93,0
chrVII	18382	.	G	T	802	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=12.73;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:96:835,96,0
chrVII	18388	.	T	C	746	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=10.97;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:90:779,90,0
chrVII	18389	.	C	G	803	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=11.81;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:96:836,96,0
chrVII	18418	.	A	G	949	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=14.60;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:982,111,0
chrVII	18425	.	A	G	841	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=13.79;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:874,99,0
chrVII	18426	.	A	T	872	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=14.30;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:905,99,0
chrVII	18452	.	A	G	694	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=12.62;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:81:727,81,0
chrVII	18461	.	T	A	665	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=33.7766;MLEAC=2;MLEAF=1.00;MQ=27.64;MQ0=0;QD=13.30;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:75:698,75,0
chrVII	18466	.	A	T	126.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.997;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=-0.555;QD=1.97;ReadPosRankSum=-2.266;SB=-7.713e+01	GT:AD:DP:GQ:PL	1/1:49,15:64:18:159,18,0
chrVII	18516	.	A	T	775	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=11.74;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:808,99,0
chrVII	18535	.	C	T	853	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.52;MQ0=0;QD=12.92;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:886,108,0
chrVII	18545	.	A	T	874	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=12.67;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:907,111,0
chrVII	18555	.	G	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.50;MQ0=0;QD=15.32;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1213,144,0
chrVII	18561	.	G	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=0;QD=14.69;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1326,156,0
chrVII	18598	.	A	C	1582	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=35.49;MQ0=0;MQRankSum=0.709;QD=17.38;ReadPosRankSum=2.919;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:3,84:91:99:1615,186,0
chrVII	18599	.	C	A	1609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=90;Dels=0.00;FS=3.612;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;MQRankSum=-1.651;QD=17.88;ReadPosRankSum=1.610;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1642,186,0
chrVII	18654	.	T	G	2297	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=23.20;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2330,261,0
chrVII	18690	.	A	G	1760	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=20.23;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1793,207,0
chrVII	18699	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=18.16;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1504,168,0
chrVII	18729	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=17.86;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1515,162,0
chrVII	18748	.	T	C	1459	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.17;MQ0=0;QD=18.01;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1492,162,0
chrVII	18909	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;MQRankSum=-0.300;QD=16.36;ReadPosRankSum=1.686;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1260,141,0
chrVII	18919	.	C	T	1160	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=15.89;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1193,129,0
chrVII	18921	.	T	C	1144	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.52;MQ0=0;QD=15.67;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1177,129,0
chrVII	18929	.	T	C	1055	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;MQRankSum=-1.466;QD=13.53;ReadPosRankSum=1.643;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1088,120,0
chrVII	18954	.	T	A	1503	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=17.08;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1536,159,0
chrVII	18987	.	C	G	1394	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=18.84;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1427,162,0
chrVII	19051	.	A	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=20.38;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1684,180,0
chrVII	19168	.	C	T	780	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=19.02;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:813,90,0
chrVII	19173	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=5.195;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;MQRankSum=1.491;QD=17.07;ReadPosRankSum=1.652;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:87:767,87,0
chrVII	19183	.	G	T	742	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=17.67;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:775,84,0
chrVII	19186	.	A	T	746	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=18.20;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:779,84,0
chrVII	19222	.	G	A	1011	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=18.72;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1044,111,0
chrVII	19226	.	C	T	957	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=44.56;MQ0=0;QD=17.72;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:990,105,0
chrVII	19266	.	A	G	1653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;MQRankSum=-0.626;QD=22.96;ReadPosRankSum=1.684;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1686,180,0
chrVII	19332	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=59;Dels=0.00;FS=2.833;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=0.064;QD=21.88;ReadPosRankSum=2.365;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:2,56:59:99:1324,144,0
chrVII	19374	.	G	A	1084	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=19.02;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1117,117,0
chrVII	19378	.	A	G	965	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=17.55;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:998,111,0
chrVII	19402	.	A	G	643	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=12.86;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:75:676,75,0
chrVII	19409	.	A	G	619	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=12.38;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:72:652,72,0
chrVII	19443	.	C	T	401	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=12.0311;MLEAC=2;MLEAF=1.00;MQ=31.37;MQ0=0;QD=7.43;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:45:434,45,0
chrVII	19445	.	A	G	374	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=55;Dels=0.00;FS=2.653;HaplotypeScore=12.9976;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=-2.908;QD=6.80;ReadPosRankSum=2.870;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:4,51:55:45:407,45,0
chrVII	19451	.	G	A	299	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.471;DP=53;Dels=0.02;FS=11.169;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=0;MQRankSum=-1.405;QD=5.64;ReadPosRankSum=2.426;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:10,42:52:39:332,39,0
chrVII	19473	.	T	G	377	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=5.89;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:45:410,45,0
chrVII	19481	.	C	T	346	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;QD=5.24;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:42:379,42,0
chrVII	19530	.	G	C	494	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=9.88;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:57:527,57,0
chrVII	19575	.	A	G	396	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;QD=10.70;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:48:429,48,0
chrVII	19599	.	T	C	398	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=10.47;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:48:431,48,0
chrVII	19600	.	C	A	437	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.03;MQ0=0;QD=11.50;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:51:470,51,0
chrVII	19636	.	T	C	527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=3.802;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=-1.516;QD=10.76;ReadPosRankSum=1.588;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:60:560,60,0
chrVII	19660	.	T	C	626	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=12.52;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:72:659,72,0
chrVII	19669	.	G	A	692	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=14.42;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:78:725,78,0
chrVII	19681	.	T	C	697	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=14.52;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:78:730,78,0
chrVII	19826	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=20.48;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1303,141,0
chrVII	19896	.	A	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.5125;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=20.54;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1060,117,0
chrVII	20174	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.66;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1571,171,0
chrVII	20382	.	C	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.3760;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.55;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1636,177,0
chrVII	21020	.	T	G	221	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=4.33;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:33:254,33,0
chrVII	21021	.	C	A	222	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=4.35;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:33:255,33,0
chrVII	21023	.	G	A	173.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=3.68;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:27:206,27,0
chrVII	21024	.	A	C	173.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=0;QD=3.68;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:27:206,27,0
chrVII	21025	.	A	C	343	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.21;MQ0=0;QD=7.46;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:48:376,48,0
chrVII	21035	.	G	A	614	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.90;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:69:647,69,0
chrVII	21039	.	A	C	592	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.70;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:66:625,66,0
chrVII	21041	.	A	G	622	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.15;MQ0=0;QD=9.72;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:72:655,72,0
chrVII	21088	.	C	T	960	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=15.00;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:993,105,0
chrVII	21096	.	G	A	923	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=14.42;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:956,102,0
chrVII	21169	.	C	A	2165	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=23.03;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2198,240,0
chrVII	21172	.	C	T	2155	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=21.55;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2188,243,0
chrVII	21218	.	C	T	2102	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=40.35;MQ0=0;QD=21.90;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2135,240,0
chrVII	21225	.	T	C	1650	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=20.37;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1683,195,0
chrVII	21241	.	G	A	1319	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=20.29;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1352,153,0
chrVII	21271	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;QD=19.60;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1248,138,0
chrVII	21318	.	C	A	1352	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.4046;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=21.46;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1385,147,0
chrVII	21409	.	T	C	761	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.49;MQ0=0;QD=17.70;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:794,87,0
chrVII	21412	.	A	G	700	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;QD=16.67;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:733,81,0
chrVII	21445	.	T	G	602	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=16.27;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:66:635,66,0
chrVII	21464	.	C	A	522	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=13.74;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:60:555,60,0
chrVII	21492	.	G	A	655	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=13.10;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:78:688,78,0
chrVII	21493	.	A	T	606	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=12.12;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:75:639,75,0
chrVII	21497	.	A	G	605	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=0.466;QD=11.63;ReadPosRankSum=1.666;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:75:638,75,0
chrVII	21504	.	C	T	679	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=11.51;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:81:712,81,0
chrVII	21513	.	G	C	635	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=53.4871;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=10.58;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:78:668,78,0
chrVII	21538	.	T	C	511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=0;MQRankSum=-0.613;QD=7.86;ReadPosRankSum=1.626;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:66:544,66,0
chrVII	21565	.	C	T	674	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;QD=9.91;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:81:707,81,0
chrVII	21569	.	G	A	594	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=0;QD=9.00;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:72:627,72,0
chrVII	21574	.	G	A	505	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=7.77;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:60:538,60,0
chrVII	21579	.	A	T	456	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=7.73;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:54:489,54,0
chrVII	21586	.	T	A	382	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=6.26;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:45:415,45,0
chrVII	21602	.	A	G	512	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;QD=8.53;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:63:545,63,0
chrVII	21626	.	G	A	700	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.08;MQ0=0;QD=12.07;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:78:733,78,0
chrVII	21658	.	C	T	619	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=12.63;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:72:652,72,0
chrVII	21694	.	C	T	586	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=10.85;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:63:619,63,0
chrVII	21704	.	G	A	391	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=8.50;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:45:424,45,0
chrVII	21705	.	T	C	372	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=8.09;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:45:405,45,0
chrVII	21710	.	G	A	448	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=9.14;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:51:481,51,0
chrVII	21712	.	T	A	509	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=9.79;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:57:542,57,0
chrVII	21719	.	T	G	457	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=8.16;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:54:490,54,0
chrVII	21722	.	T	A	484	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;QD=8.49;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:54:517,54,0
chrVII	21919	.	G	C	1435	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6633;MLEAC=2;MLEAF=1.00;MQ=41.50;MQ0=0;QD=19.93;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1468,156,0
chrVII	22018	.	A	T	432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=42;Dels=0.00;FS=5.229;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;MQRankSum=-0.347;QD=10.29;ReadPosRankSum=1.646;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:51:465,51,0
chrVII	22028	.	G	A	364	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.85;MQ0=0;QD=9.58;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:42:397,42,0
chrVII	22031	.	C	T	331	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=8.27;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:39:364,39,0
chrVII	22035	.	G	A	319	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.32;MQ0=0;QD=7.78;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:39:352,39,0
chrVII	22039	.	A	G	345	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=5.911;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=0;MQRankSum=0.578;QD=8.85;ReadPosRankSum=1.644;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:42:378,42,0
chrVII	22111	.	C	T	1549	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=18.01;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1582,174,0
chrVII	22192	.	G	A	2346	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=17.64;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2379,249,0
chrVII	22195	.	A	T	2352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=4.574;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=0.389;QD=18.23;ReadPosRankSum=1.705;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2385,252,0
chrVII	22309	.	G	A	1295	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=23.55;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1328,138,0
chrVII	22661	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.35;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1741,189,0
chrVII	22985	.	G	A	1808	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.78;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1841,192,0
chrVII	23122	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.63;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1393,147,0
chrVII	23134	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.375;QD=17.30;ReadPosRankSum=1.685;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1313,144,0
chrVII	23140	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.38;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1467,153,0
chrVII	23215	.	G	T	1430	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=17.23;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1463,159,0
chrVII	23231	.	C	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8439;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.65;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1861,195,0
chrVII	23244	.	T	C	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=97;Dels=0.00;FS=6.021;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.902;QD=17.57;ReadPosRankSum=1.696;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1737,183,0
chrVII	23383	.	T	C	1040	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1073,117,0
chrVII	23473	.	C	A	1544	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.86;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1577,165,0
chrVII	23602	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.58;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1478,156,0
chrVII	23877	.	T	C	2885	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=129;Dels=0.00;FS=6.620;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.663;QD=22.36;ReadPosRankSum=2.373;SB=-1.597e+03	GT:AD:DP:GQ:PL	1/1:2,126:129:99:2918,312,0
chrVII	23885	.	G	A	3078	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.24;SB=-1.786e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3111,324,0
chrVII	23922	.	C	T	2655	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.89;SB=-1.506e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2688,279,0
chrVII	24075	.	C	T	760	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=8.94;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:84:793,84,0
chrVII	24525	.	T	C	1582	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.97;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1615,174,0
chrVII	25442	.	C	T	1626	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1659,171,0
chrVII	25663	.	A	G	2593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=6.636;HaplotypeScore=6.7166;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.013;QD=24.46;ReadPosRankSum=1.699;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2626,279,0
chrVII	26299	.	A	G	2861	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.89;SB=-1.578e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2894,309,0
chrVII	26801	.	G	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.82;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1388,147,0
chrVII	27002	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.37;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1337,144,0
chrVII	28371	.	C	T	1952	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.52;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1985,204,0
chrVII	28799	.	C	G	1310	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1343,144,0
chrVII	29361	.	C	T	2020	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.72;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2053,213,0
chrVII	29398	.	C	T	2224	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=22.24;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2257,234,0
chrVII	33274	.	C	T	1672	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1705,180,0
chrVII	33393	.	A	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.00;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2013,210,0
chrVII	33441	.	G	A	1976	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2009,207,0
chrVII	34423	.	C	G	1999	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.86;SB=-1.256e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2032,228,0
chrVII	34691	.	T	C	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=76;Dels=0.00;FS=6.160;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.774;QD=16.30;ReadPosRankSum=2.854;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1272,138,0
chrVII	34702	.	C	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.49;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1345,141,0
chrVII	34805	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=13.64;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1274,132,0
chrVII	34808	.	A	G	1123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.158;QD=13.06;ReadPosRankSum=2.393;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1156,126,0
chrVII	35488	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.89;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1307,141,0
chrVII	35543	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9554;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.75;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1421,153,0
chrVII	36448	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.80;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1177,126,0
chrVII	39985	.	A	C	1208	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.87;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1241,138,0
chrVII	42019	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.07;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1602,168,0
chrVII	43204	.	A	T	381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.264;QD=11.21;ReadPosRankSum=2.301;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:2,32:34:45:414,45,0
chrVII	43308	.	T	G	1272	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.85;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1305,144,0
chrVII	43400	.	A	G	1310	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=24.72;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1343,147,0
chrVII	43683	.	G	A	2710	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.20;SB=-1.489e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2743,285,0
chrVII	43794	.	G	C	1554	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=16.36;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1587,168,0
chrVII	43798	.	C	T	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=95;Dels=0.00;FS=3.057;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=1.024;QD=16.13;ReadPosRankSum=1.509;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:1,92:95:99:1565,162,0
chrVII	44099	.	C	T	2724	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.48;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2757,291,0
chrVII	44164	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.95;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1708,177,0
chrVII	44308	.	A	C	1858	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1891,204,0
chrVII	44796	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.239;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.510;QD=21.13;ReadPosRankSum=1.688;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1681,183,0
chrVII	44898	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.72;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1433,150,0
chrVII	45189	.	A	G	1338	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1371,150,0
chrVII	45371	.	C	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=15.14;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1517,171,0
chrVII	45399	.	G	A	2743	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.94;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2776,297,0
chrVII	45537	.	C	A	1804	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.74;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1837,192,0
chrVII	45639	.	C	T	1349	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.00;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1382,153,0
chrVII	45669	.	A	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=21.63;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1893,204,0
chrVII	45694	.	A	G	2114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=0.485;QD=21.14;ReadPosRankSum=1.594;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2147,234,0
chrVII	45723	.	G	A	2320	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.09;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2353,249,0
chrVII	46050	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.306;QD=22.51;ReadPosRankSum=1.626;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1496,162,0
chrVII	46166	.	T	A	2410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=117;Dels=0.00;FS=11.931;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.284;QD=20.60;ReadPosRankSum=2.408;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:2,115:117:99:2443,252,0
chrVII	46197	.	C	T	2795	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.11;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2828,306,0
chrVII	46524	.	A	G	2282	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.37;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2315,255,0
chrVII	46545	.	A	G	1734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-1.571;QD=20.16;ReadPosRankSum=-1.450;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1767,171,0
chrVII	46634	.	A	G	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.191;QD=21.04;ReadPosRankSum=1.696;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2053,219,0
chrVII	46890	.	T	C	2322	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.54;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2355,261,0
chrVII	47968	.	A	G	983	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:99:1016,111,0
chrVII	47998	.	A	G	1007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=2.911;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.954;QD=20.98;ReadPosRankSum=2.348;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:1040,117,0
chrVII	51531	.	T	C	1496	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.22;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1529,171,0
chrVII	51683	.	C	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.84;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1700,180,0
chrVII	53079	.	A	T	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=-1.561;QD=20.74;ReadPosRankSum=1.561;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1734,183,0
chrVII	53148	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.4621;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=17.35;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1282,135,0
chrVII	53151	.	C	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=4.6840;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.32;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1228,132,0
chrVII	53419	.	T	C	1724	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.52;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1757,195,0
chrVII	53814	.	T	C	2498	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.23;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2531,276,0
chrVII	53868	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.97;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1522,168,0
chrVII	53982	.	C	T	2083	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2116,219,0
chrVII	54056	.	C	T	3205.99	PASS	AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=18.53;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,173:173:99:3239,360,0
chrVII	54122	.	G	A	2654	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.9874;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.66;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2687,279,0
chrVII	54197	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.80;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1386,150,0
chrVII	54246	.	T	G	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=54;Dels=0.00;FS=5.119;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.199;QD=18.09;ReadPosRankSum=1.599;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:1,51:54:99:1010,111,0
chrVII	54306	.	C	T	1479	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.65;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1512,156,0
chrVII	54455	.	C	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.73;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1641,180,0
chrVII	54618	.	T	C	1007	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.89;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1040,114,0
chrVII	54732	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.56;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1422,156,0
chrVII	54879	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=3.078;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.679;QD=21.75;ReadPosRankSum=1.572;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1490,162,0
chrVII	55015	.	G	T	1413	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.78;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1446,153,0
chrVII	55107	.	G	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=16.00;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1121,117,0
chrVII	55419	.	T	C	2147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-0.117;QD=22.60;ReadPosRankSum=2.294;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:2180,234,0
chrVII	55455	.	C	A	1971	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.91;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2004,225,0
chrVII	55464	.	G	A	1815	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=20.17;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1848,210,0
chrVII	55761	.	A	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.25;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1754,195,0
chrVII	55809	.	C	G	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=91.2629;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=0.18;SB=-8.258e+02	GT:AD:DP:GQ:PL	1/1:0,94:99:6:49,6,0
chrVII	56133	.	A	T	903	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.63;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:936,96,0
chrVII	56168	.	A	T	908	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=17.46;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:941,99,0
chrVII	56199	.	C	T	920	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.40;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:953,99,0
chrVII	56225	.	C	T	78.51	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=20.3690;MLEAC=2;MLEAF=1.00;MQ=48.70;MQ0=0;QD=1.91;SB=-4.495e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:12:111,12,0
chrVII	57501	.	C	T	2190	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.58;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2223,231,0
chrVII	57855	.	T	C	1519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=78;Dels=0.00;FS=11.444;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.442;QD=19.47;ReadPosRankSum=2.910;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1552,171,0
chrVII	58086	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.08;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1539,171,0
chrVII	58485	.	A	G	1695	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1728,189,0
chrVII	58635	.	C	T	1781	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.43;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1814,189,0
chrVII	59068	.	A	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.94;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1613,171,0
chrVII	59379	.	T	C	1172	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.93;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1205,132,0
chrVII	59601	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.22;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:917,99,0
chrVII	59754	.	T	C	1595	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.230;QD=23.12;ReadPosRankSum=1.682;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1628,180,0
chrVII	59802	.	A	G	1834	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=25.83;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1867,204,0
chrVII	60011	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.61;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1367,147,0
chrVII	60093	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1411,147,0
chrVII	60240	.	C	A	913	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=17.23;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:946,99,0
chrVII	60243	.	G	T	915	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=17.26;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:948,99,0
chrVII	60270	.	C	T	855	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=15.55;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:888,96,0
chrVII	60280	.	C	T	893	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=15.95;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:926,96,0
chrVII	60312	.	G	A	1071	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.85;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1104,117,0
chrVII	60669	.	T	C	1704	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.03;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1737,195,0
chrVII	60719	.	G	A	1672	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9991;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.00;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1705,174,0
chrVII	60729	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.77;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1549,171,0
chrVII	61349	.	G	A	2561	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.89;SB=-1.555e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2594,270,0
chrVII	61936	.	C	T	2054	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0765;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=19.56;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,102:105:99:2087,228,0
chrVII	62065	.	T	C	3168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.472;QD=24.75;ReadPosRankSum=3.348;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:4,124:128:99:3201,342,0
chrVII	62160	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=51;Dels=0.00;FS=5.229;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.525;QD=19.10;ReadPosRankSum=1.663;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:99:1007,108,0
chrVII	62583	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1420,156,0
chrVII	62921	.	A	G	1174	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.24;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1207,135,0
chrVII	63294	.	T	C	2657	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.94;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2690,291,0
chrVII	63792	.	G	A	1821	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.65;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1854,192,0
chrVII	63922	.	G	A	2093	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.62;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2126,222,0
chrVII	64305	.	A	G	2091	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.01;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2124,234,0
chrVII	64794	.	A	G	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-1.585;QD=20.82;ReadPosRankSum=1.622;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1990,219,0
chrVII	65020	.	C	T	1630	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.70;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1663,171,0
chrVII	65201	.	G	A	999	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.72;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1032,108,0
chrVII	65202	.	A	C	938	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=19.54;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:99:971,108,0
chrVII	65487	.	T	C	3182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.2836;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.974;QD=23.23;ReadPosRankSum=-0.417;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,136:137:99:3215,330,0
chrVII	65502	.	T	A	2846	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.59;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2879,306,0
chrVII	65688	.	G	A	2505	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=24.09;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2538,270,0
chrVII	65790	.	A	G	2013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.065;QD=18.14;ReadPosRankSum=1.700;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:1,108:111:99:2046,222,0
chrVII	65798	.	C	T	2069	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.09;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2102,228,0
chrVII	66126	.	T	G	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.506;QD=20.22;ReadPosRankSum=1.679;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1347,147,0
chrVII	66234	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.12;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1008,111,0
chrVII	66390	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.05;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1336,144,0
chrVII	66605	.	G	A	1601	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.63;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1634,171,0
chrVII	66712	.	G	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1313,141,0
chrVII	66820	.	T	C	1411	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1444,153,0
chrVII	67009	.	G	A	2393	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.67;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2426,252,0
chrVII	67213	.	C	T	749	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.28;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:81:782,81,0
chrVII	67253	.	T	C	866	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.98;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:899,99,0
chrVII	67418	.	C	T	2293	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.70;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2326,246,0
chrVII	67623	.	C	T	1687	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=23.11;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1720,189,0
chrVII	67680	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=23.66;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1902,198,0
chrVII	67850	.	G	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.14;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1514,156,0
chrVII	68009	.	T	A	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.635;HaplotypeScore=5.2417;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;MQRankSum=0.304;QD=18.58;ReadPosRankSum=1.696;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1835,189,0
chrVII	68034	.	T	C	1769	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=17.34;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1802,198,0
chrVII	68056	.	A	G	2471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=156;Dels=0.00;FS=3.069;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;MQRankSum=0.416;QD=15.84;ReadPosRankSum=1.686;SB=-1.849e+03	GT:AD:DP:GQ:PL	1/1:1,149:156:99:2504,267,0
chrVII	68080	.	C	T	2826	PASS	AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=17.02;SB=-1.559e+03	GT:AD:DP:GQ:PL	1/1:0,165:166:99:2859,300,0
chrVII	68098	.	C	T	3351.01	PASS	AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.04;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,176:176:99:3351,357,0
chrVII	68203	.	T	C	1999	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.40;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2032,225,0
chrVII	68211	.	G	A	1902	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.02;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1935,204,0
chrVII	68385	.	G	A	2307	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=18.60;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2340,243,0
chrVII	68413	.	G	A	2695	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.53;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2728,285,0
chrVII	68542	.	T	C	2240	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=108;Dels=0.00;FS=3.707;HaplotypeScore=8.6932;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.091;QD=20.74;ReadPosRankSum=1.700;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2273,249,0
chrVII	68689	.	G	A	1785	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.49;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1818,189,0
chrVII	68806	.	T	C	1485	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3746;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.52;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1518,168,0
chrVII	68875	.	A	G	1795	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.44;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1828,201,0
chrVII	69214	.	A	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.95;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1901,201,0
chrVII	69249	.	G	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.43;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1603,174,0
chrVII	69315	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=12.30;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1029,114,0
chrVII	69403	.	T	G	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.747;DP=198;Dels=0.00;FS=17.041;HaplotypeScore=168.7833;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-2.033;QD=8.63;ReadPosRankSum=4.431;SB=-1.954e+03	GT:AD:DP:GQ:PL	1/1:13,185:198:99:1741,192,0
chrVII	69481	.	T	C	3352.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=22.7456;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.91;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,150:152:99:3352,375,0
chrVII	69622	.	T	C	1583	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.1357;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.20;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1616,177,0
chrVII	70828	.	A	G	1442	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.52;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1475,162,0
chrVII	71083	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.808;QD=19.48;ReadPosRankSum=1.686;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1494,162,0
chrVII	71095	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.59;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1502,162,0
chrVII	71125	.	C	T	1199	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=15.37;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,73:78:99:1232,135,0
chrVII	71209	.	C	T	1941	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.0875;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.57;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1974,207,0
chrVII	71410	.	G	A	1911	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.75;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1944,201,0
chrVII	72505	.	T	C	2087	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.52;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2120,228,0
chrVII	72738	.	A	G	3021	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.79;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,126:127:99:3054,327,0
chrVII	72788	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.9147;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=16.28;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1791,204,0
chrVII	72874	.	C	T	2550	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.17;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2583,270,0
chrVII	73077	.	G	A	2820	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.74;SB=-1.548e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2853,303,0
chrVII	73206	.	C	T	1543	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.2625;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.37;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1576,165,0
chrVII	73220	.	C	T	1767	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=16.99;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1800,192,0
chrVII	73493	.	C	G	1794	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.71;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1827,195,0
chrVII	73615	.	A	G	1332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.363;QD=16.05;ReadPosRankSum=2.913;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:3,78:83:99:1365,147,0
chrVII	74322	.	A	G	1651	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.01;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1684,183,0
chrVII	74365	.	C	T	966	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=16.10;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,59:60:99:999,111,0
chrVII	74414	.	G	A	763	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.29;MQ0=0;QD=19.07;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:84:796,84,0
chrVII	74421	.	A	G	698	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.90;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:39:81:731,81,0
chrVII	74423	.	G	T	649	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:78:682,78,0
chrVII	74439	.	C	T	607	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.505;DP=59;Dels=0.00;FS=161.590;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;MQRankSum=-1.360;QD=10.29;ReadPosRankSum=6.427;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:23,36:59:66:640,66,0
chrVII	74446	.	A	T	504.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.876;DP=62;Dels=0.00;FS=143.500;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;MQRankSum=0.692;QD=8.13;ReadPosRankSum=-6.184;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:26,36:62:15:537,15,0
chrVII	74453	.	T	G	52.97	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=0;QD=2.04;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,26:26:9:85,9,0
chrVII	74547	.	A	G	614	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=21.17;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:72:647,72,0
chrVII	74670	.	A	G	1018	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=24.24;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1051,117,0
chrVII	74769	.	G	A	1078	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=21.14;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1111,117,0
chrVII	74789	.	T	C	1220	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=20.68;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1253,132,0
chrVII	74942	.	T	G	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.171;DP=71;Dels=0.00;FS=5.502;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.683;QD=23.72;ReadPosRankSum=-0.171;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1717,170,0
chrVII	74983	.	A	G	1880	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.7907;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.50;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1913,216,0
chrVII	75107	.	G	A	2352	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.83;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2385,249,0
chrVII	75209	.	T	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.07;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1406,153,0
chrVII	75210	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=1.020;QD=18.46;ReadPosRankSum=1.590;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1399,153,0
chrVII	75280	.	T	C	2292	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.6811;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=21.83;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2325,246,0
chrVII	75494	.	G	T	343	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.8110;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=3.24;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:42:376,42,0
chrVII	75619	.	G	A	1983	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.924;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0852;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-1.540;QD=21.79;ReadPosRankSum=-0.770;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,89:91:99:2016,186,0
chrVII	75625	.	A	G	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=90;Dels=0.00;FS=5.544;HaplotypeScore=5.2965;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;MQRankSum=-0.877;QD=19.56;ReadPosRankSum=2.922;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:3,87:90:99:1793,198,0
chrVII	75663	.	T	C	1412	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=19.34;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1445,159,0
chrVII	76021	.	A	T	1732	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.43;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1765,186,0
chrVII	76069	.	G	T	2313	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.90;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2346,255,0
chrVII	76241	.	A	G	1402	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=19.47;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1435,159,0
chrVII	76247	.	A	G	1274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;MQRankSum=-0.198;QD=18.20;ReadPosRankSum=1.534;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1307,138,0
chrVII	76663	.	G	C	1211	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.85;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1244,138,0
chrVII	76882	.	T	C	1613	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.80;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1646,180,0
chrVII	76989	.	T	C	748	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.22;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:781,84,0
chrVII	77025	.	T	C	1020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=5.099;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.472;QD=18.55;ReadPosRankSum=1.669;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1053,114,0
chrVII	77052	.	C	T	1072	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.14;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1105,120,0
chrVII	77580	.	G	A	3081	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.17;SB=-1.411e+03	GT:AD:DP:GQ:PL	1/1:0,130:133:99:3114,336,0
chrVII	77983	.	T	C	2807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=144;Dels=0.00;FS=3.492;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=61.19;MQ0=0;MQRankSum=-0.569;QD=19.49;ReadPosRankSum=1.708;SB=-1.647e+03	GT:AD:DP:GQ:PL	1/1:1,142:144:99:2840,306,0
chrVII	78029	.	A	G	2465	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.95;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2498,264,0
chrVII	78750	.	C	T	572	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:63:605,63,0
chrVII	78859	.	A	G	474	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=16.93;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:54:507,54,0
chrVII	79107	.	T	C	1428	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.41;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1461,159,0
chrVII	80122	.	T	C	1383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.397;QD=21.61;ReadPosRankSum=1.676;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,61:64:99:1416,150,0
chrVII	80380	.	G	C	743	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.51;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:84:776,84,0
chrVII	80643	.	T	C	440	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=7.4047;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;MQRankSum=1.281;QD=18.33;ReadPosRankSum=-0.226;SB=-6.000e+01	GT:AD:DP:GQ:PL	1/1:1,23:24:51:473,51,0
chrVII	81094	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.4905;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.469;QD=20.56;ReadPosRankSum=1.688;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1657,180,0
chrVII	81306	.	T	A	1744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.681;QD=19.60;ReadPosRankSum=1.654;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1777,189,0
chrVII	81381	.	G	A	2097	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.62;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2130,225,0
chrVII	82621	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.09;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1138,117,0
chrVII	82858	.	A	G	2167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.009;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.7560;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.220;QD=19.18;ReadPosRankSum=2.753;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:3,107:113:99:2200,240,0
chrVII	83138	.	C	T	1261	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5053;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=15.19;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1294,141,0
chrVII	83158	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.8220;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=13.57;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1146,126,0
chrVII	83286	.	A	G	1426	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.67;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1459,159,0
chrVII	83355	.	T	C	1961	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.86;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1994,219,0
chrVII	83478	.	A	G	1903	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=3.522;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.107;QD=23.21;ReadPosRankSum=1.689;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1936,210,0
chrVII	83730	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.19;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1305,147,0
chrVII	83793	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.45;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1582,171,0
chrVII	83832	.	C	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.29;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1287,138,0
chrVII	84066	.	C	G	1145	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.74;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1178,123,0
chrVII	84395	.	T	C	2304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=106;Dels=0.00;FS=9.285;HaplotypeScore=11.1305;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.721;QD=21.74;ReadPosRankSum=2.933;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:3,102:106:99:2337,255,0
chrVII	84548	.	C	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.0824;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.67;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1172,120,0
chrVII	84577	.	G	A	785	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.10;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:87:818,87,0
chrVII	84604	.	G	A	538	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=15.82;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:60:571,60,0
chrVII	84614	.	G	A	673	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.171;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=1.264;QD=18.19;ReadPosRankSum=1.545;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:75:706,75,0
chrVII	84785	.	A	G	709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.127;QD=17.29;ReadPosRankSum=1.310;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:84:742,84,0
chrVII	84969	.	G	A	1149	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.3985;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.45;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1182,120,0
chrVII	85190	.	A	C	1150	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.47;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1183,129,0
chrVII	86026	.	A	G	2431	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.10;SB=-1.366e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2464,267,0
chrVII	86297	.	C	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.05;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1686,177,0
chrVII	86321	.	T	C	1474	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.06;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1507,162,0
chrVII	86411	.	A	C	1716	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.45;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1749,189,0
chrVII	86432	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.85;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1601,174,0
chrVII	87769	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1137,123,0
chrVII	88274	.	T	C	1913	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;DP=95;Dels=0.00;FS=2.804;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.517;QD=20.14;ReadPosRankSum=1.309;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1946,191,0
chrVII	88301	.	T	C	2226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.735;DP=118;Dels=0.00;FS=5.339;HaplotypeScore=9.6563;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.556;QD=18.86;ReadPosRankSum=1.145;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:3,115:118:99:2259,226,0
chrVII	88387	.	C	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.37;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2090,216,0
chrVII	88664	.	C	T	2430	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.50;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2463,264,0
chrVII	88681	.	A	G	2523	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.9308;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.94;SB=-1.566e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2556,276,0
chrVII	88716	.	G	A	2100	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.00;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2133,228,0
chrVII	89982	.	A	T	3170	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.64;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3203,336,0
chrVII	90087	.	G	A	1653	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.67;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1686,183,0
chrVII	90290	.	C	T	2675	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.11;SB=-1.712e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2708,294,0
chrVII	90754	.	A	G	814	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.09;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:93:847,93,0
chrVII	90761	.	T	C	712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.031;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.279;QD=17.80;ReadPosRankSum=2.327;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:2,38:40:81:745,81,0
chrVII	90968	.	G	A	1804	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.4328;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.74;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1837,192,0
chrVII	91031	.	C	T	2014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.121;QD=22.89;ReadPosRankSum=0.917;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:1,84:88:99:2047,213,0
chrVII	91222	.	G	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.55;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1533,156,0
chrVII	91467	.	G	A	2284	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.9213;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.61;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,98:101:99:2317,246,0
chrVII	91485	.	C	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.17;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1762,186,0
chrVII	91652	.	G	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3692;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.75;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1631,171,0
chrVII	92390	.	A	T	1434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.577;QD=19.64;ReadPosRankSum=1.684;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1467,153,0
chrVII	92715	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.33;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1293,144,0
chrVII	92892	.	T	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.21;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1339,150,0
chrVII	93270	.	C	T	2273	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.43;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2306,240,0
chrVII	93327	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=2.946;HaplotypeScore=9.8409;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;MQRankSum=0.529;QD=22.56;ReadPosRankSum=-0.412;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1454,150,0
chrVII	93381	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.09;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1359,150,0
chrVII	93397	.	G	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.88;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1453,156,0
chrVII	93435	.	C	T	1473	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.66;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1506,159,0
chrVII	93622	.	G	A	2013	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0939;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.88;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2046,213,0
chrVII	94124	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1600,171,0
chrVII	94586	.	T	C	2215	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=24.89;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2248,243,0
chrVII	94635	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.231;QD=21.39;ReadPosRankSum=1.690;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1808,195,0
chrVII	94647	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.11;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1541,162,0
chrVII	94727	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1249,135,0
chrVII	94815	.	C	G	868	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:901,99,0
chrVII	95005	.	T	A	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.123;QD=20.48;ReadPosRankSum=1.694;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1897,201,0
chrVII	95112	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.40;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1422,156,0
chrVII	95182	.	G	A	1079	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.96;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1112,114,0
chrVII	95404	.	G	C	1376	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.11;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1409,150,0
chrVII	95731	.	C	T	781	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.97;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:84:814,84,0
chrVII	96007	.	T	A	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.662;QD=23.57;ReadPosRankSum=1.662;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1188,126,0
chrVII	96070	.	G	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.87;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1245,129,0
chrVII	96091	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.66;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1350,138,0
chrVII	96214	.	G	A	1783	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.42;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1816,186,0
chrVII	96377	.	T	C	1322	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.7661;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.86;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1355,150,0
chrVII	96763	.	G	A	1916	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2659;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.29;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1949,204,0
chrVII	96869	.	G	A	1839	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.21;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1872,210,0
chrVII	97008	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.35;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1186,123,0
chrVII	97411	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.168;QD=19.79;ReadPosRankSum=1.509;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1260,135,0
chrVII	97412	.	C	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=20.45;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1260,132,0
chrVII	97436	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.36;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1400,147,0
chrVII	97616	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.53;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1225,135,0
chrVII	98090	.	C	A	1957	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.74;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1990,207,0
chrVII	98117	.	G	A	1401	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=17.96;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1434,150,0
chrVII	98124	.	G	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1649;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=14.68;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1237,135,0
chrVII	98387	.	T	G	1513	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=13.4172;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.827;QD=18.68;ReadPosRankSum=2.013;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:2,77:81:99:1546,171,0
chrVII	98492	.	C	T	1436	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.41;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1469,159,0
chrVII	98591	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=16.36;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1293,132,0
chrVII	98608	.	G	C	1103	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=58.0321;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=15.32;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1136,123,0
chrVII	98706	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=-1.683;QD=20.03;ReadPosRankSum=1.635;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1455,159,0
chrVII	99303	.	T	A	1959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;DP=84;Dels=0.00;FS=2.583;HaplotypeScore=9.0814;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.121;QD=23.32;ReadPosRankSum=1.976;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:3,81:84:99:1992,207,0
chrVII	99361	.	G	A	1280	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.33;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1313,141,0
chrVII	99508	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.578;QD=21.27;ReadPosRankSum=1.578;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:990,105,0
chrVII	99730	.	T	C	774	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.50;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:807,87,0
chrVII	99976	.	T	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.54;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1433,156,0
chrVII	100009	.	A	G	963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.786;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;MQRankSum=-0.346;QD=17.51;ReadPosRankSum=1.669;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:996,108,0
chrVII	100015	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=15.75;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:962,102,0
chrVII	100021	.	A	T	703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.832;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=-1.170;QD=12.55;ReadPosRankSum=2.362;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:65:736,65,0
chrVII	100030	.	T	C	733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=-0.577;QD=14.37;ReadPosRankSum=1.664;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:84:766,84,0
chrVII	100087	.	A	G	535	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=16.72;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:60:568,60,0
chrVII	100110	.	T	C	603	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=15.87;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:69:636,69,0
chrVII	100175	.	C	T	1199	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1232,129,0
chrVII	100351	.	T	A	2399	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=26.66;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2432,255,0
chrVII	100717	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,53:57:99:1221,135,0
chrVII	100756	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.26;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1480,159,0
chrVII	100825	.	C	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4997;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.89;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1456,153,0
chrVII	100858	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.20;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1326,141,0
chrVII	100904	.	T	C	1311	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.60;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1344,147,0
chrVII	100984	.	T	C	1085	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.60;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1118,120,0
chrVII	101050	.	A	G	1105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.102;QD=20.09;ReadPosRankSum=1.669;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1138,123,0
chrVII	101198	.	T	C	2742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=119;Dels=0.00;FS=2.669;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=0.641;QD=23.04;ReadPosRankSum=2.408;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:2,115:119:99:2775,297,0
chrVII	101437	.	G	A	1562	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.28;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1595,171,0
chrVII	101815	.	T	C	2896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.642;QD=25.18;ReadPosRankSum=1.672;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2929,315,0
chrVII	101923	.	T	C	2055	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.6530;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.09;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2088,225,0
chrVII	102109	.	G	A	2745	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.8113;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.75;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2778,300,0
chrVII	102386	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.00;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1783,189,0
chrVII	102510	.	G	A	415	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.9677;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=11.53;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:51:448,51,0
chrVII	102955	.	C	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.22;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1542,168,0
chrVII	103410	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.94;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1524,159,0
chrVII	104051	.	G	T	242.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.321;DP=51;Dels=0.00;FS=99.566;HaplotypeScore=1.8188;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=0;MQRankSum=-0.890;QD=4.75;ReadPosRankSum=-5.196;SB=-3.010e+00	GT:AD:DP:GQ:PL	0/1:30,21:51:99:272,0,339
chrVII	104502	.	G	A	1513	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.31;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1546,165,0
chrVII	104760	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.29;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1769,186,0
chrVII	104775	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0974;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.05;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1709,180,0
chrVII	104993	.	G	A	1969	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.61;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2002,210,0
chrVII	106068	.	C	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1517,159,0
chrVII	106214	.	A	G	1293	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.09;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1326,144,0
chrVII	106314	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.35;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1437,147,0
chrVII	106438	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.80;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1260,138,0
chrVII	106548	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1449,153,0
chrVII	106704	.	T	C	981	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.02;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1014,111,0
chrVII	106751	.	C	T	1064	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.86;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1097,114,0
chrVII	106941	.	T	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=3.140;HaplotypeScore=5.6284;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.528;QD=16.23;ReadPosRankSum=0.968;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,67:70:99:1169,129,0
chrVII	107169	.	C	T	1950	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.91;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1983,207,0
chrVII	107461	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.29;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1571,174,0
chrVII	107657	.	A	G	1595	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.577;QD=20.45;ReadPosRankSum=1.688;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1628,177,0
chrVII	107743	.	A	G	1280	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.32;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1313,141,0
chrVII	107757	.	T	G	1344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.720;QD=20.36;ReadPosRankSum=1.679;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1377,150,0
chrVII	107809	.	G	T	1458	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.7753;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=17.15;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1491,156,0
chrVII	107810	.	C	T	1463	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.9866;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=17.42;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1496,156,0
chrVII	107814	.	C	T	1436	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=17.30;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1469,156,0
chrVII	108238	.	G	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.32;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1035,114,0
chrVII	108343	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.64;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1073,117,0
chrVII	108369	.	A	C	836	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=17.79;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:869,96,0
chrVII	108374	.	A	C	893	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.00;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:926,99,0
chrVII	108797	.	G	A	1380	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.29;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1413,156,0
chrVII	109075	.	T	C	1781	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.2823;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.13;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1814,195,0
chrVII	109424	.	T	G	1539	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.68;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1572,168,0
chrVII	109776	.	T	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.74;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1711,189,0
chrVII	109784	.	G	A	1495	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=16.61;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1528,174,0
chrVII	109841	.	C	T	1954	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.14;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1987,207,0
chrVII	109972	.	T	C	1932	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=19.71;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,96:98:99:1965,216,0
chrVII	110008	.	T	A	2070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=5.213;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.838;QD=22.26;ReadPosRankSum=1.695;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2103,219,0
chrVII	110035	.	C	T	2017	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.92;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2050,210,0
chrVII	110083	.	C	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.48;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1687,174,0
chrVII	110518	.	A	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=21.66;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1939,201,0
chrVII	110740	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.42;MQ0=0;MQRankSum=-0.894;QD=19.15;ReadPosRankSum=1.676;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1220,138,0
chrVII	111592	.	G	T	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.92;MQ0=1;QD=1.38;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,18:18:6:56,6,0
chrVII	111603	.	A	T	79.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=4.18;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,19:19:12:112,12,0
chrVII	111607	.	A	G	76.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.83;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:12:109,12,0
chrVII	111609	.	A	G	73.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.68;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:12:106,12,0
chrVII	111614	.	G	A	88.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=3.54;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,25:25:12:121,12,0
chrVII	111618	.	T	G	102.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.457;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.54;MQ0=0;MQRankSum=-3.496;QD=2.43;ReadPosRankSum=3.573;SB=-5.227e+01	GT:AD:DP:GQ:PL	1/1:5,37:42:15:135,15,0
chrVII	111632	.	G	A	573	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=0;QD=10.05;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,54:57:63:606,63,0
chrVII	111678	.	C	T	2113	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=21.56;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2146,228,0
chrVII	111703	.	A	T	2686	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=23.36;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2719,294,0
chrVII	111770	.	G	C	1613	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=20.16;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1646,177,0
chrVII	111789	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;MQRankSum=-0.912;QD=17.39;ReadPosRankSum=1.687;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1372,150,0
chrVII	111809	.	A	G	1237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;MQRankSum=-0.337;QD=15.86;ReadPosRankSum=1.642;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1270,141,0
chrVII	111921	.	G	C	1749	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=21.59;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1782,198,0
chrVII	111953	.	T	C	2161	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=21.40;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2194,240,0
chrVII	111969	.	A	G	1999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=103;Dels=0.01;FS=3.554;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=1.392;QD=19.41;ReadPosRankSum=1.596;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2032,219,0
chrVII	111972	.	A	G	1983	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=3.811;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;MQRankSum=0.189;QD=19.63;ReadPosRankSum=1.698;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2016,219,0
chrVII	112033	.	G	T	2183	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.1068;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.59;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2216,231,0
chrVII	112158	.	C	T	1837	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.19;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1870,198,0
chrVII	112175	.	C	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.0452;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.36;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1682,174,0
chrVII	112250	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.0312;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.22;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1436,162,0
chrVII	112532	.	C	G	1060	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=24.09;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1093,117,0
chrVII	112754	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.35;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1143,126,0
chrVII	112793	.	G	A	1407	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.089;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5006;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.633;QD=19.82;ReadPosRankSum=1.683;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1440,153,0
chrVII	112826	.	T	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.25;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1669,180,0
chrVII	112862	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.96;MQ0=0;QD=20.64;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1643,180,0
chrVII	112994	.	G	A	615	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=9.32;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:69:648,69,0
chrVII	113123	.	A	G	2157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=4.853;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.473;QD=19.79;ReadPosRankSum=1.505;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,106:109:99:2190,240,0
chrVII	113471	.	G	A	2559	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.47;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2592,270,0
chrVII	113653	.	T	C	1774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=4.924;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.418;QD=20.39;ReadPosRankSum=1.692;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1807,198,0
chrVII	113828	.	A	C	1527	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.81;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1560,171,0
chrVII	114332	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.2442;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.47;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1394,147,0
chrVII	114462	.	C	T	1948	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.9745;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.66;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1981,207,0
chrVII	114793	.	C	A	3317.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=13.5521;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.03;SB=-1.661e+03	GT:AD:DP:GQ:PL	1/1:0,139:144:99:3317,357,0
chrVII	115232	.	A	G	1454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=70;Dels=0.00;FS=6.214;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;MQRankSum=-0.261;QD=20.77;ReadPosRankSum=2.900;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1487,159,0
chrVII	115250	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.73;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1414,153,0
chrVII	115467	.	C	T	3191	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.17;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:0,128:132:99:3224,345,0
chrVII	115589	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=2;QD=17.10;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1350,141,0
chrVII	115633	.	G	A	1654	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7692;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=17.23;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,93:96:99:1687,174,0
chrVII	115872	.	C	A	2100	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.00;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2133,234,0
chrVII	115965	.	T	C	2478	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=22.32;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2511,273,0
chrVII	116078	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.28;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1221,132,0
chrVII	116382	.	T	C	1967	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.93;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2000,216,0
chrVII	116400	.	A	G	1866	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.44;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1899,210,0
chrVII	116454	.	C	T	1920	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.87;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1953,207,0
chrVII	116907	.	C	T	1781	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.13;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1814,189,0
chrVII	117360	.	T	C	1718	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5471;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.91;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1751,192,0
chrVII	117574	.	G	A	2093	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.75;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2126,222,0
chrVII	117630	.	A	G	2355	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.41;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2388,258,0
chrVII	117810	.	C	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.92;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1611,168,0
chrVII	117824	.	A	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.24;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1626,171,0
chrVII	117825	.	A	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.23;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1533,171,0
chrVII	117896	.	G	A	1923	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.61;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1956,207,0
chrVII	118133	.	C	T	1866	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=12.0199;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.51;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1899,201,0
chrVII	118505	.	T	C	1758	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.90;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1791,195,0
chrVII	118535	.	C	T	2167	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.11;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2200,228,0
chrVII	119177	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.19;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1224,132,0
chrVII	119852	.	C	T	2067	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.31;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2100,219,0
chrVII	119894	.	G	A	2000	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.05;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2033,216,0
chrVII	120263	.	T	G	824	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.61;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:96:857,96,0
chrVII	120933	.	G	A	2146	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.59;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2179,222,0
chrVII	121176	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.22;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1412,156,0
chrVII	121571	.	T	C	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=7.884;HaplotypeScore=8.3230;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.991;QD=21.37;ReadPosRankSum=2.393;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1871,204,0
chrVII	121697	.	C	T	2018	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=20.80;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2051,213,0
chrVII	121769	.	G	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=16.94;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1439,150,0
chrVII	121774	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=16.73;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1388,153,0
chrVII	121840	.	G	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8536;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.57;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1910,198,0
chrVII	121902	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.70;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1395,153,0
chrVII	121931	.	G	A	1486	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=21.23;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1519,156,0
chrVII	121932	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.20;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1447,159,0
chrVII	122047	.	G	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=20.55;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1924,201,0
chrVII	122120	.	G	A	1902	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.67;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1935,210,0
chrVII	122226	.	T	A	1162	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=19.37;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1195,126,0
chrVII	122234	.	G	C	962	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=17.18;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:995,111,0
chrVII	122235	.	T	A	1009	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=17.70;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1042,111,0
chrVII	122391	.	C	A	800	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=15.09;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:87:833,87,0
chrVII	122394	.	A	G	801	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=15.11;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:834,93,0
chrVII	122405	.	C	A	775	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.29;MQ0=0;QD=13.36;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:84:808,84,0
chrVII	122445	.	T	C	846	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.02;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:96:879,96,0
chrVII	122455	.	T	G	1123	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=13.70;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1156,123,0
chrVII	122466	.	T	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8618;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=15.28;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1194,123,0
chrVII	122499	.	T	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=15.35;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1230,129,0
chrVII	122622	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=23.28;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1802,189,0
chrVII	122646	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=20.76;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1486,159,0
chrVII	122674	.	A	T	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=92;Dels=0.00;FS=5.788;HaplotypeScore=8.7696;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.933;QD=19.82;ReadPosRankSum=1.694;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1856,195,0
chrVII	122793	.	A	G	1542	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=24.48;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1575,174,0
chrVII	123330	.	G	C	2146	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.04;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2179,237,0
chrVII	123533	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.6274;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.75;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1773,186,0
chrVII	123568	.	T	A	2118	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.77;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2151,225,0
chrVII	123716	.	G	T	1642	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.4738;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.32;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1675,186,0
chrVII	123776	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.795;DP=66;Dels=0.00;FS=12.048;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.445;QD=21.08;ReadPosRankSum=2.890;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:3,61:66:99:1424,153,0
chrVII	123812	.	C	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.78;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1710,177,0
chrVII	124205	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.40;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1192,129,0
chrVII	124322	.	C	T	1864	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=12.9015;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.02;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1897,198,0
chrVII	124413	.	T	C	354	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=9.32;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:42:387,42,0
chrVII	124460	.	A	G	761	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.30;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:794,87,0
chrVII	124525	.	G	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.37;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1319,138,0
chrVII	124541	.	T	C	1080	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=16.36;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1113,120,0
chrVII	124671	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.10;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1381,153,0
chrVII	124719	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.06;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1024,114,0
chrVII	124761	.	A	G	876	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.47;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:909,96,0
chrVII	124850	.	T	C	846	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.69;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:879,93,0
chrVII	124916	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.62;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1392,150,0
chrVII	124931	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=92;Dels=0.00;FS=12.747;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=-0.264;QD=17.50;ReadPosRankSum=3.319;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:4,86:92:99:1643,177,0
chrVII	125048	.	C	T	2097	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.3926;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.38;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2130,225,0
chrVII	125090	.	T	C	1728	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=25.41;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1761,186,0
chrVII	125128	.	G	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.74;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1511,159,0
chrVII	125147	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=60;Dels=0.00;FS=8.449;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.062;QD=21.42;ReadPosRankSum=2.368;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1318,144,0
chrVII	125177	.	G	A	1172	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=16.99;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1205,126,0
chrVII	125195	.	T	C	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.549;QD=15.93;ReadPosRankSum=1.648;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1355,147,0
chrVII	125279	.	G	A	2043	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=23.22;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2076,228,0
chrVII	125333	.	A	G	1871	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.02;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1904,207,0
chrVII	125498	.	C	T	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.172;DP=72;Dels=0.00;FS=3.051;HaplotypeScore=4.1375;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.504;QD=18.90;ReadPosRankSum=2.311;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1394,132,0
chrVII	125513	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.67;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1335,147,0
chrVII	125604	.	G	A	2108	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=23.16;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2141,222,0
chrVII	125655	.	G	T	1356	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.38;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1389,150,0
chrVII	125658	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.684;QD=16.50;ReadPosRankSum=1.687;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1287,138,0
chrVII	125786	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=2.452;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.117;QD=19.98;ReadPosRankSum=2.685;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:3,58:61:99:1252,135,0
chrVII	125810	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.29;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1229,135,0
chrVII	126093	.	T	C	720	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.00;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:84:753,84,0
chrVII	126106	.	A	G	634	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=17.14;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:667,72,0
chrVII	126149	.	G	A	746	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=17.35;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:779,81,0
chrVII	126167	.	A	T	857	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.48;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:890,93,0
chrVII	126362	.	C	T	1113	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.68;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1146,123,0
chrVII	126466	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.24;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1323,141,0
chrVII	126593	.	C	A	1103	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.98;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1136,123,0
chrVII	126965	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=4.284;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.321;QD=21.88;ReadPosRankSum=1.674;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1324,147,0
chrVII	127046	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.86;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1205,132,0
chrVII	127181	.	A	C	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=86;Dels=0.00;FS=3.164;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.272;QD=22.10;ReadPosRankSum=2.335;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1934,210,0
chrVII	127213	.	G	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.78;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1916,201,0
chrVII	127238	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.78;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1468,156,0
chrVII	127817	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=78;Dels=0.00;FS=11.553;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-0.490;QD=17.78;ReadPosRankSum=2.260;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1420,153,0
chrVII	127838	.	C	T	2133	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.39;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2166,234,0
chrVII	127940	.	A	G	2521	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=116;Dels=0.00;FS=3.036;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.986;QD=21.73;ReadPosRankSum=2.280;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:2,114:116:99:2554,285,0
chrVII	128648	.	T	A	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.02;FS=3.409;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.732;QD=20.41;ReadPosRankSum=1.611;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1217,126,0
chrVII	129417	.	G	C	2211	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.52;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2244,240,0
chrVII	130374	.	G	A	792	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.80;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:825,87,0
chrVII	130478	.	C	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.4143;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.32;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1055,114,0
chrVII	135021	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.02;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1437,159,0
chrVII	136414	.	T	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4937;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.64;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1560,168,0
chrVII	142176	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1501,156,0
chrVII	142353	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.58;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1457,153,0
chrVII	142388	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.00;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1059,117,0
chrVII	142398	.	G	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.20;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1225,129,0
chrVII	142582	.	T	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1343,141,0
chrVII	142631	.	A	G	1403	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.38;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1436,150,0
chrVII	142656	.	G	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.68;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1194,135,0
chrVII	142677	.	C	T	997	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.81;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1030,108,0
chrVII	142737	.	C	T	549	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.16;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:60:582,60,0
chrVII	142798	.	T	C	809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.211;QD=19.73;ReadPosRankSum=1.648;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:93:842,93,0
chrVII	142863	.	C	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.82;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1495,159,0
chrVII	142953	.	G	A	1876	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.75;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1909,198,0
chrVII	143025	.	C	T	2357	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.45;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2390,249,0
chrVII	143073	.	C	T	1557	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.90;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1590,168,0
chrVII	143359	.	T	C	1750	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.3672;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.66;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1783,192,0
chrVII	147192	.	T	C	2338	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.48;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2371,258,0
chrVII	147291	.	A	G	939	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.47;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:972,108,0
chrVII	147412	.	T	A	2114	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.57;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2147,231,0
chrVII	147477	.	T	C	2375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=108;Dels=0.00;FS=9.533;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-2.595;QD=21.99;ReadPosRankSum=2.934;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:3,104:108:99:2408,261,0
chrVII	148118	.	T	C	3434.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.53;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3434,378,0
chrVII	148376	.	T	C	2627	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.04;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2660,288,0
chrVII	148710	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=81;Dels=0.00;FS=3.178;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=-0.197;QD=21.42;ReadPosRankSum=1.644;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1768,195,0
chrVII	148767	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=18.15;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1213,129,0
chrVII	148771	.	G	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=18.54;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1201,126,0
chrVII	148854	.	C	G	1638	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.00;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1671,183,0
chrVII	148891	.	C	T	2491	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=23.72;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2524,267,0
chrVII	148906	.	A	C	2604	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=21.34;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2637,288,0
chrVII	148947	.	C	T	3209	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=21.83;SB=-1.465e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3242,348,0
chrVII	148957	.	G	A	3463.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=22.93;SB=-1.714e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:3463,363,0
chrVII	148993	.	G	C	2953	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.55;SB=-1.514e+03	GT:AD:DP:GQ:PL	1/1:0,135:137:99:2986,327,0
chrVII	149107	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.31;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1482,159,0
chrVII	149109	.	C	G	1414	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.20;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1447,159,0
chrVII	149142	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.58;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1088,117,0
chrVII	149252	.	G	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=14.36;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1196,132,0
chrVII	149279	.	A	T	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=78;Dels=0.00;FS=6.172;HaplotypeScore=2.7736;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;MQRankSum=-0.648;QD=15.62;ReadPosRankSum=2.355;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1251,132,0
chrVII	149298	.	G	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=15.95;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1229,138,0
chrVII	149346	.	G	A	1444	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8028;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.61;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1477,156,0
chrVII	149387	.	A	G	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.692;QD=19.84;ReadPosRankSum=1.692;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1739,195,0
chrVII	149393	.	G	A	1894	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.28;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1927,201,0
chrVII	150130	.	G	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=9.9761;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=21.88;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1674,180,0
chrVII	150234	.	C	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=15.70;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1383,147,0
chrVII	150271	.	A	G	1331	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=83;Dels=0.00;FS=3.064;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-1.969;QD=16.04;ReadPosRankSum=2.390;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1364,147,0
chrVII	150302	.	T	A	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.876;QD=18.10;ReadPosRankSum=1.693;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1662,180,0
chrVII	150329	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=19.97;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1511,165,0
chrVII	150335	.	A	C	1319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-1.547;QD=17.59;ReadPosRankSum=-0.069;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1352,147,0
chrVII	150399	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=15.21;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:763,84,0
chrVII	150444	.	G	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=21.20;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1432,150,0
chrVII	150466	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=18.59;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1632,177,0
chrVII	150477	.	T	C	1591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=3.040;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.00;MQ0=0;MQRankSum=-1.610;QD=17.88;ReadPosRankSum=2.394;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1624,177,0
chrVII	150487	.	A	G	1624	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=17.46;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1657,183,0
chrVII	150517	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=16.40;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1722,189,0
chrVII	150806	.	T	C	1805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=6.886;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=-0.939;QD=21.75;ReadPosRankSum=1.690;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1838,198,0
chrVII	150832	.	T	A	1897	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;QD=24.01;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1930,201,0
chrVII	150894	.	G	A	1913	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=21.49;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1946,204,0
chrVII	150923	.	A	G	1923	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.61;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1956,213,0
chrVII	150956	.	C	A	2011	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.73;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2044,216,0
chrVII	150964	.	C	T	2019	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.19;SB=-1.301e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2052,219,0
chrVII	151493	.	T	C	2681	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6475;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.672;QD=22.72;ReadPosRankSum=1.672;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:1,115:118:99:2714,297,0
chrVII	151562	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=6.273;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.638;QD=22.08;ReadPosRankSum=2.254;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1976,216,0
chrVII	151622	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.7902;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.10;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1889,192,0
chrVII	151697	.	C	T	1469	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1502,156,0
chrVII	151784	.	C	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.01;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1421,150,0
chrVII	151811	.	A	G	1646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.186;QD=20.57;ReadPosRankSum=2.357;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1679,180,0
chrVII	152066	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.45;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1025,111,0
chrVII	152150	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.47;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1336,150,0
chrVII	152183	.	T	G	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.475;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.180;QD=20.26;ReadPosRankSum=1.682;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1431,153,0
chrVII	152342	.	C	T	1797	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.75;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1830,192,0
chrVII	152354	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=18.88;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1657,174,0
chrVII	152410	.	C	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8316;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.54;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1557,162,0
chrVII	152516	.	T	C	2092	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=14.0614;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=19.74;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2125,234,0
chrVII	152609	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.20;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1185,126,0
chrVII	152750	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=16.89;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1232,135,0
chrVII	152783	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=14.57;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1388,147,0
chrVII	152788	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.954;QD=13.59;ReadPosRankSum=-0.212;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1365,147,0
chrVII	152800	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=13.54;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1509,156,0
chrVII	152914	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.3991;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=20.80;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1718,180,0
chrVII	152918	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6147;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.79;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1613,165,0
chrVII	152937	.	G	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=18.83;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1163,123,0
chrVII	152948	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.54;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1103,114,0
chrVII	153123	.	G	C	1622	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5447;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=20.27;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1655,183,0
chrVII	153164	.	C	T	1701	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=23.30;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1734,183,0
chrVII	153186	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=21.46;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1514,171,0
chrVII	153263	.	A	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.27;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1703,177,0
chrVII	153377	.	T	C	1792	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.89;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1825,198,0
chrVII	153480	.	C	T	852	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=15.21;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:885,96,0
chrVII	153481	.	T	C	837	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=14.95;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:870,99,0
chrVII	153497	.	T	C	1053	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.06;MQ0=0;QD=15.04;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1086,123,0
chrVII	153503	.	T	A	1036	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=15.01;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1069,117,0
chrVII	153551	.	T	G	780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=56;Dels=0.00;FS=2.847;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=0.022;QD=13.93;ReadPosRankSum=-0.022;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:2,53:56:90:813,90,0
chrVII	153574	.	A	T	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.842;DP=73;Dels=0.00;FS=6.970;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.842;QD=16.45;ReadPosRankSum=2.315;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1234,132,0
chrVII	153827	.	T	C	736	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=18.87;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:769,84,0
chrVII	153833	.	G	A	768	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=18.73;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:801,84,0
chrVII	153920	.	G	A	1098	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.30;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1131,120,0
chrVII	154100	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.70;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1335,147,0
chrVII	154159	.	T	C	1064	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.577;QD=20.86;ReadPosRankSum=1.664;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1097,120,0
chrVII	154193	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.35;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1434,150,0
chrVII	154294	.	G	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=18.51;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1551,159,0
chrVII	154299	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=2.836;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-0.490;QD=15.01;ReadPosRankSum=2.272;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1279,138,0
chrVII	154324	.	C	G	1041	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=12.85;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,77:81:99:1074,120,0
chrVII	154339	.	G	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=15.69;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1461,153,0
chrVII	154496	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.479;QD=19.90;ReadPosRankSum=1.690;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1665,183,0
chrVII	154728	.	C	T	1774	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.37;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1807,192,0
chrVII	154779	.	C	T	1827	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.76;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1860,195,0
chrVII	154863	.	C	T	2349	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.35;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2382,249,0
chrVII	154885	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.92;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1806,186,0
chrVII	155125	.	C	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1764,186,0
chrVII	155494	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1173,129,0
chrVII	156057	.	T	C	671	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=15.25;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:75:704,75,0
chrVII	156141	.	A	T	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chrVII	156182	.	G	A	931	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=26.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:99:964,102,0
chrVII	156252	.	G	A	689	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.61;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:72:722,72,0
chrVII	156895	.	G	A	1099	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.35;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1132,117,0
chrVII	157257	.	T	C	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.262;QD=18.83;ReadPosRankSum=1.627;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1897,204,0
chrVII	157262	.	T	C	1746	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=99;Dels=0.00;FS=2.690;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;MQRankSum=0.162;QD=17.64;ReadPosRankSum=2.375;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:1779,195,0
chrVII	157520	.	G	C	1519	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.81;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1552,171,0
chrVII	157593	.	A	T	1471	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-0.421;QD=19.88;ReadPosRankSum=1.685;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1504,156,0
chrVII	157594	.	C	T	1467	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=19.56;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1500,156,0
chrVII	157595	.	A	G	1391	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.80;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1424,156,0
chrVII	157723	.	G	A	1267	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=20.77;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1300,135,0
chrVII	157735	.	C	A	878	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=16.57;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:911,102,0
chrVII	157782	.	T	C	1028	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.04;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1061,117,0
chrVII	157822	.	C	G	1786	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.19;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1819,201,0
chrVII	157854	.	G	A	2247	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=23.16;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2280,234,0
chrVII	157878	.	A	G	2093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.645;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.340;QD=20.52;ReadPosRankSum=1.698;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2126,228,0
chrVII	157902	.	A	G	1842	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.39;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1875,207,0
chrVII	157962	.	G	C	1579	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.57;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1612,174,0
chrVII	158115	.	T	C	1725	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.12;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1758,192,0
chrVII	158256	.	C	T	1790	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.57;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1823,195,0
chrVII	158457	.	C	G	1136	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.29;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1169,132,0
chrVII	158527	.	G	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.18;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1466,159,0
chrVII	158919	.	G	A	120.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.424;DP=146;Dels=0.00;FS=40.372;HaplotypeScore=431.5753;MLEAC=1;MLEAF=0.500;MQ=43.36;MQ0=0;MQRankSum=-7.112;QD=0.82;ReadPosRankSum=-0.867;SB=-1.750e+02	GT:AD:DP:GQ:PL	0/1:99,47:146:99:150,0,891
chrVII	158925	.	G	A	153.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.751;DP=141;Dels=0.00;FS=42.815;HaplotypeScore=285.8038;MLEAC=1;MLEAF=0.500;MQ=41.25;MQ0=0;MQRankSum=-4.963;QD=1.09;ReadPosRankSum=1.036;SB=-2.000e+02	GT:AD:DP:GQ:PL	0/1:91,50:141:99:183,0,623
chrVII	158928	.	A	T	337.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228;DP=137;Dels=0.01;FS=1.477;HaplotypeScore=119.1004;MLEAC=1;MLEAF=0.500;MQ=40.33;MQ0=0;MQRankSum=0.098;QD=2.46;ReadPosRankSum=-3.126;SB=-2.680e+02	GT:AD:DP:GQ:PL	0/1:96,40:136:99:367,0,411
chrVII	158931	.	G	A	338.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.545;DP=134;Dels=0.00;FS=9.223;HaplotypeScore=171.3897;MLEAC=1;MLEAF=0.500;MQ=39.78;MQ0=0;MQRankSum=-3.567;QD=2.52;ReadPosRankSum=1.533;SB=-5.730e+02	GT:AD:DP:GQ:PL	0/1:68,66:134:99:368,0,190
chrVII	158933	.	C	T	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;DP=132;Dels=0.01;FS=18.236;HaplotypeScore=193.6630;MLEAC=1;MLEAF=0.500;MQ=39.39;MQ0=0;MQRankSum=2.438;QD=0.30;ReadPosRankSum=-1.831;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:119,12:131:69:69,0,469
chrVII	158939	.	T	C	206.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.686;DP=125;Dels=0.00;FS=17.192;HaplotypeScore=211.9717;MLEAC=1;MLEAF=0.500;MQ=37.91;MQ0=0;MQRankSum=-3.800;QD=1.65;ReadPosRankSum=6.374;SB=-3.840e+02	GT:AD:DP:GQ:PL	0/1:67,58:125:99:236,0,848
chrVII	158952	.	T	C	71.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;DP=121;Dels=0.00;FS=8.239;HaplotypeScore=225.5364;MLEAC=1;MLEAF=0.500;MQ=34.40;MQ0=0;MQRankSum=-1.841;QD=0.59;ReadPosRankSum=3.744;SB=-2.030e+02	GT:AD:DP:GQ:PL	0/1:72,36:121:99:101,0,665
chrVII	158958	.	T	C	171.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;DP=122;Dels=0.00;FS=3.669;HaplotypeScore=234.4824;MLEAC=1;MLEAF=0.500;MQ=33.69;MQ0=0;MQRankSum=1.030;QD=1.40;ReadPosRankSum=-0.109;SB=-3.960e+02	GT:AD:DP:GQ:PL	0/1:67,42:122:99:201,0,344
chrVII	158961	.	G	A	414.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;DP=116;Dels=0.00;FS=4.698;HaplotypeScore=233.7529;MLEAC=1;MLEAF=0.500;MQ=32.11;MQ0=0;MQRankSum=0.402;QD=3.57;ReadPosRankSum=-1.318;SB=-5.910e+02	GT:AD:DP:GQ:PL	0/1:52,64:116:40:444,0,40
chrVII	158964	.	C	A	203.34	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;DP=112;Dels=0.00;FS=0.936;HaplotypeScore=250.4534;MLEAC=1;MLEAF=0.500;MQ=31.83;MQ0=0;MQRankSum=-0.226;QD=1.82;ReadPosRankSum=-0.562;SB=-1.793e+02	GT:AD:DP:GQ:PL	0/1:48,29:112:99:233,0,126
chrVII	158967	.	G	A	463.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.680;DP=108;Dels=0.00;FS=1.864;HaplotypeScore=239.3684;MLEAC=1;MLEAF=0.500;MQ=31.53;MQ0=0;MQRankSum=0.908;QD=4.29;ReadPosRankSum=2.065;SB=-7.180e+02	GT:AD:DP:GQ:PL	0/1:28,80:108:40:493,0,40
chrVII	158970	.	T	A	195.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=107;Dels=0.00;FS=3.134;HaplotypeScore=190.8421;MLEAC=1;MLEAF=0.500;MQ=32.36;MQ0=0;MQRankSum=-0.676;QD=1.82;ReadPosRankSum=-3.388;SB=-2.440e+02	GT:AD:DP:GQ:PL	0/1:65,29:107:99:225,0,392
chrVII	158973	.	G	A	279.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.787;DP=104;Dels=0.00;FS=0.773;HaplotypeScore=154.2076;MLEAC=1;MLEAF=0.500;MQ=32.86;MQ0=0;MQRankSum=-1.522;QD=2.68;ReadPosRankSum=-5.101;SB=-3.840e+02	GT:AD:DP:GQ:PL	0/1:57,47:104:99:309,0,328
chrVII	159045	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.03;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1476,153,0
chrVII	159246	.	G	C	1998	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8928;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.96;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2031,216,0
chrVII	159444	.	C	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=14.8050;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=17.26;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1880,198,0
chrVII	159586	.	C	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.22;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1519,159,0
chrVII	159617	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.14;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1365,144,0
chrVII	159705	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.54;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1101,114,0
chrVII	159882	.	A	C	1686	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.78;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1719,183,0
chrVII	160577	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.30;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1059,111,0
chrVII	160667	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.82;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1282,135,0
chrVII	160700	.	C	T	1237	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.91;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1270,135,0
chrVII	160730	.	A	G	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.299;QD=20.00;ReadPosRankSum=1.670;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1153,129,0
chrVII	160781	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.54;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1142,123,0
chrVII	160952	.	A	G	1824	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=5.528;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.254;QD=24.00;ReadPosRankSum=1.686;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1857,204,0
chrVII	160998	.	C	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.3849;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.43;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1767,186,0
chrVII	161187	.	T	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=26.17;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1289,138,0
chrVII	161445	.	T	C	2230	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=4.331;HaplotypeScore=9.0240;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.362;QD=21.44;ReadPosRankSum=1.228;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:1,102:104:99:2263,243,0
chrVII	162080	.	G	A	1349	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.1210;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=20.13;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1382,147,0
chrVII	162554	.	T	C	2385	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4346;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.38;SB=-1.308e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2418,261,0
chrVII	162614	.	A	C	2012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.113;QD=21.87;ReadPosRankSum=1.694;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2045,219,0
chrVII	162856	.	A	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.46;SB=-6.001e+01	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1356,141,0
chrVII	162943	.	C	T	731	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=19.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:81:764,81,0
chrVII	162996	.	A	T	517	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;QD=17.23;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:57:550,57,0
chrVII	163149	.	A	G	317	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.583;DP=18;Dels=0.00;FS=28.325;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.945;QD=17.61;ReadPosRankSum=2.583;SB=-7.065e-03	GT:AD:DP:GQ:PL	1/1:3,14:18:39:350,39,0
chrVII	163245	.	A	T	1527	filter	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1560,165,0
chrVII	163257	.	A	G	1333	filter	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=17.31;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1366,153,0
chrVII	163275	.	C	G	1781	filter	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.75;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1814,204,0
chrVII	163345	.	T	C	1606	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.646;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.299;QD=21.13;ReadPosRankSum=3.709;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:5,71:76:99:1639,180,0
chrVII	163360	.	A	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.97;SB=-4.401e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1431,159,0
chrVII	163361	.	G	T	1469	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.99;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1502,159,0
chrVII	163491	.	C	T	3055	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.2717;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.44;SB=-1.583e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3088,321,0
chrVII	163894	.	G	A	1617	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.48;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1650,177,0
chrVII	164066	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1581,165,0
chrVII	164429	.	T	A	1444	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=69;Dels=0.00;FS=3.029;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.627;QD=20.93;ReadPosRankSum=2.343;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1477,153,0
chrVII	164620	.	G	C	1646	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.70;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1679,180,0
chrVII	164774	.	T	C	1789	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.82;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1822,195,0
chrVII	164885	.	A	G	842	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.05;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:875,93,0
chrVII	164981	.	T	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.61;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1764,186,0
chrVII	164982	.	A	G	1656	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.95;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1689,183,0
chrVII	165111	.	T	C	1383	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.64;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1416,153,0
chrVII	165212	.	A	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.12;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1161,126,0
chrVII	165349	.	C	T	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.274;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.579;QD=19.50;ReadPosRankSum=1.172;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1359,144,0
chrVII	165434	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.34;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1665,177,0
chrVII	165469	.	G	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.41;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1625,171,0
chrVII	165497	.	G	C	1357	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.20;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1390,150,0
chrVII	165523	.	C	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.95;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1185,123,0
chrVII	165780	.	C	A	1816	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.21;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1849,192,0
chrVII	165842	.	A	G	817	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.45;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:850,90,0
chrVII	165866	.	A	G	585	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.21;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:69:618,69,0
chrVII	165923	.	C	T	568	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.04;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,26:27:60:601,60,0
chrVII	166254	.	A	G	156.06	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=11.15;SB=-1.131e+02	GT:AD:DP:GQ:PL	1/1:0,13:14:21:189,21,0
chrVII	166257	.	G	A	159.06	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=9.94;SB=-1.091e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:21:192,21,0
chrVII	166667	.	C	G	1567	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.35;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1600,177,0
chrVII	167076	.	T	C	1349	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.75;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1382,150,0
chrVII	167099	.	C	T	1315	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.92;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1348,141,0
chrVII	167210	.	C	T	1016	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.58;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1049,108,0
chrVII	167578	.	C	T	654	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=17.68;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:687,72,0
chrVII	167583	.	G	C	597	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=15.71;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:630,69,0
chrVII	167889	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=21.21;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1433,150,0
chrVII	167895	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=-1.039;QD=19.66;ReadPosRankSum=1.679;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1311,144,0
chrVII	168156	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.876;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.146;QD=15.13;ReadPosRankSum=1.649;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1304,144,0
chrVII	168582	.	A	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.07;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1177,129,0
chrVII	169165	.	C	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.44;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1880,195,0
chrVII	169257	.	G	A	2002	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.82;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2035,222,0
chrVII	169612	.	A	G	2454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=2.851;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-1.922;QD=21.91;ReadPosRankSum=2.318;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:2,110:112:99:2487,270,0
chrVII	170211	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=10.815;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.628;QD=16.51;ReadPosRankSum=2.398;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:2,94:96:99:1618,171,0
chrVII	170641	.	G	A	650	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=9.2321;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=1.260;QD=9.70;ReadPosRankSum=1.522;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:51:683,51,0
chrVII	170661	.	T	A	527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=58;Dels=0.03;FS=3.680;HaplotypeScore=11.7913;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.186;QD=9.09;ReadPosRankSum=1.670;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:57:560,57,0
chrVII	170880	.	A	C	290	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.11;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,17:18:36:323,36,0
chrVII	171278	.	G	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=20.40;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1053,108,0
chrVII	171282	.	T	C	1003	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.57;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1036,114,0
chrVII	171503	.	G	C	797	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.92;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:90:830,90,0
chrVII	171550	.	A	G	776	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=44;Dels=0.00;FS=11.357;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-1.769;QD=17.64;ReadPosRankSum=2.701;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:3,41:44:84:809,84,0
chrVII	171569	.	G	A	694	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=16.14;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:78:727,78,0
chrVII	171571	.	A	T	633	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=14.72;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:69:666,69,0
chrVII	171676	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=18.51;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1329,147,0
chrVII	171763	.	G	A	1484	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.27;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:77:99:1517,159,0
chrVII	171909	.	G	A	1872	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=21.77;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1905,204,0
chrVII	171921	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=21.17;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1790,192,0
chrVII	171949	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;DP=73;Dels=0.00;FS=9.073;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;MQRankSum=-0.824;QD=16.04;ReadPosRankSum=2.815;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:4,68:73:99:1204,109,0
chrVII	171995	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.80;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1510,165,0
chrVII	172032	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.823;QD=22.06;ReadPosRankSum=1.689;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1798,189,0
chrVII	172111	.	G	A	1699	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.72;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1732,183,0
chrVII	172132	.	G	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.59;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1953,207,0
chrVII	172210	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.49;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1836,198,0
chrVII	172231	.	A	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.39;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1616,171,0
chrVII	172407	.	A	T	1462	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.49;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1495,159,0
chrVII	172596	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.13;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1421,150,0
chrVII	172879	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.3913;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.07;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1654,180,0
chrVII	173276	.	C	T	1897	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.71;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1930,201,0
chrVII	173796	.	T	C	1299	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=3.061;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.355;QD=19.39;ReadPosRankSum=2.375;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:99:1332,144,0
chrVII	173856	.	T	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.6177;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.52;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1829,201,0
chrVII	174098	.	C	G	1331	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.18;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1364,147,0
chrVII	174187	.	G	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.35;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1997,216,0
chrVII	174247	.	G	A	1800	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.56;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1833,192,0
chrVII	174324	.	T	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.26;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1585,165,0
chrVII	174394	.	A	G	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.476;QD=19.40;ReadPosRankSum=1.689;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1585,177,0
chrVII	174507	.	A	G	1753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.191;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.687;QD=22.77;ReadPosRankSum=1.687;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1786,189,0
chrVII	174523	.	A	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.64;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1408,153,0
chrVII	174818	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.86;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1636,177,0
chrVII	174975	.	G	A	1792	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.36;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1825,192,0
chrVII	175590	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.42;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1154,120,0
chrVII	175787	.	A	G	2275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9900;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.221;QD=21.26;ReadPosRankSum=2.403;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:2,104:107:99:2308,252,0
chrVII	175866	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1660;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=17.92;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1610,171,0
chrVII	175871	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=2.736;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-0.311;QD=16.93;ReadPosRankSum=2.314;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1574,174,0
chrVII	175893	.	C	G	1371	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.28;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1404,150,0
chrVII	176107	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.29;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1170,126,0
chrVII	176415	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.44;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1791,195,0
chrVII	177152	.	A	C	857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.236;QD=19.48;ReadPosRankSum=1.654;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:93:890,93,0
chrVII	177165	.	C	T	800	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=17.02;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:833,87,0
chrVII	177524	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.866;QD=18.83;ReadPosRankSum=1.678;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1238,135,0
chrVII	177632	.	C	T	1804	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1283;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.71;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1837,192,0
chrVII	177687	.	T	C	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.140;QD=23.45;ReadPosRankSum=1.641;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1815,198,0
chrVII	177783	.	C	T	2456	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.13;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2489,267,0
chrVII	177876	.	A	G	1127	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.89;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1160,129,0
chrVII	177882	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=17.90;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1143,123,0
chrVII	178052	.	G	T	2474	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.6968;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.70;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2507,264,0
chrVII	178133	.	G	A	2630	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9803;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.48;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2663,276,0
chrVII	178179	.	C	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.57;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1672,177,0
chrVII	178295	.	C	T	932	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=10.4918;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=16.07;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,53:58:99:965,102,0
chrVII	178402	.	G	A	2462	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2495,255,0
chrVII	178509	.	T	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1386;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.92;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1611,174,0
chrVII	179910	.	G	A	1418	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.48;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:66:99:1451,150,0
chrVII	180027	.	A	G	1081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-1.520;QD=22.06;ReadPosRankSum=1.662;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1114,123,0
chrVII	180894	.	T	G	915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.885;QD=19.47;ReadPosRankSum=0.962;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,44:47:99:948,102,0
chrVII	181007	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.11;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1237,135,0
chrVII	181036	.	A	G	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.370;QD=16.78;ReadPosRankSum=1.681;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1157,126,0
chrVII	181069	.	C	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=15.42;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1159,129,0
chrVII	181138	.	G	A	2201	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.30;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2234,237,0
chrVII	181935	.	T	A	1703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.451;QD=23.01;ReadPosRankSum=1.685;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1736,183,0
chrVII	182242	.	T	G	2504	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.31;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2537,267,0
chrVII	182388	.	C	A	1997	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2030,210,0
chrVII	182485	.	T	G	2760	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.59;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2793,300,0
chrVII	182781	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=13.0638;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.99;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1649,177,0
chrVII	182995	.	G	A	1547	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.44;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1580,168,0
chrVII	183038	.	T	C	1448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.987;DP=65;Dels=0.00;FS=3.561;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.058;QD=22.28;ReadPosRankSum=2.334;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:2,62:65:99:1481,162,0
chrVII	183709	.	T	C	1411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.4680;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.108;QD=21.38;ReadPosRankSum=1.624;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1444,156,0
chrVII	184145	.	T	A	1976	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.80;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2009,219,0
chrVII	184213	.	G	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.2234;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.74;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1683,180,0
chrVII	184438	.	T	C	1764	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.78;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1797,192,0
chrVII	184572	.	C	T	1266	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.83;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1299,135,0
chrVII	185240	.	T	G	1491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.881;QD=19.12;ReadPosRankSum=2.386;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1524,168,0
chrVII	185280	.	T	C	1617	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=0.000;QD=21.85;ReadPosRankSum=1.592;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1650,180,0
chrVII	185620	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.32;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1540,168,0
chrVII	185628	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.73;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1828,192,0
chrVII	185806	.	G	A	701	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=14.60;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:78:734,78,0
chrVII	185836	.	A	G	70.51	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=46.2271;MLEAC=2;MLEAF=1.00;MQ=44.33;MQ0=0;QD=1.31;SB=-2.939e+01	GT:AD:DP:GQ:PL	1/1:0,7:54:12:103,12,0
chrVII	185846	.	G	A	961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.680;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;MQRankSum=-1.127;QD=15.25;ReadPosRankSum=1.677;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:994,105,0
chrVII	185982	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=20.60;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1434,150,0
chrVII	186330	.	G	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=22.27;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1748,183,0
chrVII	186367	.	A	G	1995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.860;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.732;QD=22.17;ReadPosRankSum=1.655;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2028,222,0
chrVII	186769	.	T	C	1510	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.98;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1543,171,0
chrVII	186792	.	C	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.50;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1671,174,0
chrVII	187003	.	T	C	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;MQRankSum=0.783;QD=20.93;ReadPosRankSum=1.685;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1561,171,0
chrVII	187054	.	T	G	1652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.129;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=0.281;QD=22.32;ReadPosRankSum=1.592;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1685,183,0
chrVII	187174	.	A	G	2235	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=25.69;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2268,246,0
chrVII	187348	.	G	T	1566	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=16.31;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1599,165,0
chrVII	187354	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=14.37;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1312,144,0
chrVII	187532	.	T	A	3039	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=24.91;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3072,316,0
chrVII	187556	.	C	G	2470	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.4220;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.45;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2503,267,0
chrVII	187678	.	A	G	2757	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.88;SB=-1.658e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2790,306,0
chrVII	188242	.	A	G	1858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=4.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.599;QD=23.82;ReadPosRankSum=1.688;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1891,204,0
chrVII	188282	.	T	C	2197	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5282;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.88;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2230,240,0
chrVII	188702	.	G	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.62;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1683,174,0
chrVII	188827	.	A	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.1294;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.11;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1218,129,0
chrVII	189229	.	A	T	2598	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.83;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2631,279,0
chrVII	189910	.	T	G	908	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.92;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:941,102,0
chrVII	190037	.	C	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.54;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1060,114,0
chrVII	190333	.	C	T	1473	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.97;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1506,156,0
chrVII	190505	.	C	T	2179	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.57;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2212,231,0
chrVII	190661	.	G	A	2648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.00;FS=3.226;HaplotypeScore=6.9932;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.564;QD=25.22;ReadPosRankSum=0.151;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:1,102:105:99:2681,276,0
chrVII	191102	.	A	G	1963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.717;QD=19.83;ReadPosRankSum=1.697;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1996,213,0
chrVII	191348	.	A	G	2098	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.7002;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.40;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2131,234,0
chrVII	193477	.	G	A	2442	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.61;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2475,255,0
chrVII	193691	.	A	G	2610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=117;Dels=0.00;FS=7.261;HaplotypeScore=13.9641;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.746;QD=22.31;ReadPosRankSum=2.408;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:2,115:117:99:2643,288,0
chrVII	193938	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.26;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1968,207,0
chrVII	194505	.	C	T	1501	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.06;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1534,165,0
chrVII	194553	.	G	A	1446	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.81;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1479,153,0
chrVII	195492	.	G	A	1118	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.61;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1151,120,0
chrVII	195522	.	G	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=18.19;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1088,114,0
chrVII	195546	.	G	A	723	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=13.90;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:756,81,0
chrVII	195549	.	A	G	792	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;DP=54;Dels=0.00;FS=2.533;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.24;MQ0=0;MQRankSum=0.353;QD=14.67;ReadPosRankSum=2.786;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:3,49:54:90:825,90,0
chrVII	195555	.	G	A	945	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=15.75;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:978,105,0
chrVII	195692	.	G	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.55;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1702,177,0
chrVII	195804	.	T	C	1249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=-1.386;QD=17.84;ReadPosRankSum=1.683;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1282,138,0
chrVII	195843	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=8.195;HaplotypeScore=4.5902;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=0.019;QD=20.71;ReadPosRankSum=2.375;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1400,153,0
chrVII	195912	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.0655;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.24;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:945,102,0
chrVII	196275	.	C	G	982	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=16.10;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1015,111,0
chrVII	196468	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=4.288;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.306;QD=19.69;ReadPosRankSum=1.664;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1037,114,0
chrVII	196504	.	G	C	917	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.38;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:950,105,0
chrVII	196614	.	T	C	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=14.2549;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=-1.588;QD=18.25;ReadPosRankSum=1.684;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1347,147,0
chrVII	196684	.	G	A	874	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.81;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:96:907,96,0
chrVII	196757	.	A	T	1392	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=24.00;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1425,150,0
chrVII	196769	.	C	T	1300	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.21;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1333,138,0
chrVII	196840	.	G	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=21.61;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1265,132,0
chrVII	196912	.	G	A	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;MQRankSum=-0.018;QD=0.35;ReadPosRankSum=-2.841;SB=-2.776e+01	GT:AD:DP:GQ:PL	1/1:54,3:57:6:51,6,0
chrVII	196947	.	C	T	600	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=8.00;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:66:633,66,0
chrVII	196981	.	G	A	365	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=24.1627;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=6.40;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:42:398,42,0
chrVII	197150	.	C	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.30;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1393,150,0
chrVII	197465	.	A	G	796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=52;Dels=0.00;FS=3.035;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=2.055;QD=15.31;ReadPosRankSum=2.352;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:2,49:52:87:829,87,0
chrVII	197813	.	T	C	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=43.4664;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=-1.299;QD=17.52;ReadPosRankSum=1.083;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:93:874,93,0
chrVII	197942	.	C	T	800	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.00;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:87:833,87,0
chrVII	197989	.	G	A	495	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.57;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:54:528,54,0
chrVII	198003	.	T	A	565	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.18;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:63:598,63,0
chrVII	198274	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.70;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1304,135,0
chrVII	198286	.	C	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.80;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1196,126,0
chrVII	198476	.	T	C	1657	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=2.936;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.706;QD=20.21;ReadPosRankSum=2.390;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1690,183,0
chrVII	199690	.	A	G	1958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=100;Dels=0.00;FS=6.335;HaplotypeScore=10.5165;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.704;QD=19.58;ReadPosRankSum=2.400;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:2,97:100:99:1991,216,0
chrVII	199882	.	A	G	1790	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.27;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1823,201,0
chrVII	199894	.	A	G	1835	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=18.54;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1868,198,0
chrVII	200351	.	C	T	2168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.700;QD=22.82;ReadPosRankSum=1.290;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2201,228,0
chrVII	200448	.	G	A	3489.01	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-1.467e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3489,355,0
chrVII	200728	.	C	T	2269	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.59;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,126:129:99:2302,249,0
chrVII	201093	.	C	T	2983	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.67;SB=-1.550e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3016,312,0
chrVII	201499	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1366,147,0
chrVII	201788	.	G	A	2477	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.8634;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.28;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2510,255,0
chrVII	201855	.	T	C	1974	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.897;QD=23.50;ReadPosRankSum=1.690;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:2007,213,0
chrVII	202039	.	T	G	3683.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=9.0087;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.07;SB=-1.975e+03	GT:AD:DP:GQ:PL	1/1:0,153:153:99:3683,402,0
chrVII	202082	.	A	T	2787	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.22;SB=-1.424e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2820,294,0
chrVII	202475	.	A	G	1904	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.80;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1937,213,0
chrVII	202531	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.72;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1358,150,0
chrVII	202665	.	T	A	2067	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0564;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.49;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2100,225,0
chrVII	203122	.	G	C	2187	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.30;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2220,237,0
chrVII	203677	.	A	G	1739	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4376;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.74;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1772,198,0
chrVII	203693	.	A	G	1485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.866;QD=21.21;ReadPosRankSum=1.528;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:1,67:70:99:1518,165,0
chrVII	203815	.	C	G	1618	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.11;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1651,183,0
chrVII	203897	.	A	T	2603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.622;QD=23.45;ReadPosRankSum=2.383;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:2,109:111:99:2636,270,0
chrVII	203987	.	A	T	1444	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=78;Dels=0.00;FS=9.430;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-1.639;QD=18.51;ReadPosRankSum=2.320;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1477,159,0
chrVII	204007	.	C	T	1894	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=23.38;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1927,204,0
chrVII	204092	.	T	G	1963	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.83;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1996,213,0
chrVII	204226	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.31;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1618,168,0
chrVII	204286	.	G	A	1694	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8479;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=23.21;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1727,186,0
chrVII	204321	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=21.79;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1362,147,0
chrVII	204339	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.09;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1263,138,0
chrVII	204665	.	T	G	1896	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.30;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1929,213,0
chrVII	204972	.	G	A	1834	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.16;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1867,195,0
chrVII	205031	.	C	T	2582	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.07;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2615,273,0
chrVII	205152	.	C	T	2344	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6741;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.12;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2377,258,0
chrVII	205307	.	T	A	3394.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.508;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-0.735;QD=24.42;ReadPosRankSum=1.607;SB=-1.565e+03	GT:AD:DP:GQ:PL	1/1:1,138:139:99:3394,363,0
chrVII	205559	.	C	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=20.00;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1513,159,0
chrVII	205830	.	T	G	532	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.70;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:60:565,60,0
chrVII	205832	.	C	T	576	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.33;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:63:609,63,0
chrVII	205894	.	T	C	488	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.22;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:57:521,57,0
chrVII	206526	.	T	C	284	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=9.47;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:36:317,36,0
chrVII	206532	.	A	T	285	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=9.50;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:33:318,33,0
chrVII	206685	.	A	C	743	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=18.57;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:776,84,0
chrVII	206716	.	T	C	732	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.85;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:765,84,0
chrVII	206722	.	G	A	783	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.64;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:816,84,0
chrVII	206738	.	T	C	520	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=14.86;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:60:553,60,0
chrVII	207056	.	A	T	719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=3.478;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.530;QD=14.67;ReadPosRankSum=1.662;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:78:752,78,0
chrVII	207071	.	T	C	711	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=16.53;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:744,81,0
chrVII	207180	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.60;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1394,144,0
chrVII	207481	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.60;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1163,120,0
chrVII	207520	.	C	A	871	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=18.93;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:904,93,0
chrVII	207523	.	T	C	805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=2.706;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-0.727;QD=17.50;ReadPosRankSum=2.343;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:90:838,90,0
chrVII	207551	.	T	C	817	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.67;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:850,93,0
chrVII	207761	.	A	G	2039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.069;QD=21.69;ReadPosRankSum=1.695;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2072,228,0
chrVII	207781	.	T	G	2024	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.49;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2057,225,0
chrVII	207893	.	A	G	1672	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.59;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1705,186,0
chrVII	208001	.	C	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=18.69;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1304,141,0
chrVII	208005	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=68;Dels=0.00;FS=3.144;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-0.262;QD=18.74;ReadPosRankSum=1.680;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1307,138,0
chrVII	208034	.	C	T	1361	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=16.01;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1394,150,0
chrVII	208043	.	T	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.51;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1625,177,0
chrVII	208280	.	G	C	2302	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.35;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2335,255,0
chrVII	208340	.	T	C	2555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.817;QD=24.33;ReadPosRankSum=2.309;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:2,103:105:99:2588,288,0
chrVII	208469	.	C	T	1171	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.89;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1204,123,0
chrVII	208555	.	A	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.13;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1660,174,0
chrVII	208622	.	G	A	3046	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=5.0113;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.04;SB=-1.415e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:3079,336,0
chrVII	208634	.	T	C	3119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.914;DP=170;Dels=0.00;FS=14.174;HaplotypeScore=10.9536;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=1.558;QD=18.35;ReadPosRankSum=4.066;SB=-1.528e+03	GT:AD:DP:GQ:PL	1/1:6,164:170:99:3152,342,0
chrVII	208689	.	T	C	2440	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.3574;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.68;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2473,273,0
chrVII	208784	.	T	C	217.01	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;QD=7.00;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:27:250,27,0
chrVII	208835	.	G	T	959	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.18;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:992,108,0
chrVII	209011	.	T	C	1596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.4971;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.940;QD=21.57;ReadPosRankSum=1.683;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,69:74:99:1629,177,0
chrVII	209066	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=23.17;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1539,168,0
chrVII	209671	.	G	T	1057	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.22;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1090,117,0
chrVII	210027	.	T	C	1033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=3.892;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.247;QD=20.66;ReadPosRankSum=1.662;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1066,120,0
chrVII	210194	.	A	G	2031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=10.580;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.996;QD=25.39;ReadPosRankSum=1.646;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:2064,225,0
chrVII	210314	.	C	T	836	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=20.90;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:869,90,0
chrVII	210517	.	T	C	1897	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.56;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1930,213,0
chrVII	210538	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.24;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1649,177,0
chrVII	210745	.	C	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.37;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1668,183,0
chrVII	210785	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.55;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1519,168,0
chrVII	210946	.	T	C	1771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.120;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.476;QD=22.14;ReadPosRankSum=1.646;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1804,198,0
chrVII	211015	.	G	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.09;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1172,126,0
chrVII	211576	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.06;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1401,144,0
chrVII	211876	.	A	G	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.238;QD=22.04;ReadPosRankSum=1.664;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1179,126,0
chrVII	211884	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.513;QD=21.06;ReadPosRankSum=1.668;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1170,129,0
chrVII	211975	.	C	T	1364	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5557;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=17.49;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1397,150,0
chrVII	212009	.	T	C	1927	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.15;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1960,213,0
chrVII	212128	.	C	T	1327	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1360,147,0
chrVII	212216	.	T	C	995	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.31;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1028,111,0
chrVII	212554	.	G	A	727	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.72;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:760,78,0
chrVII	212597	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.28;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1033,114,0
chrVII	212679	.	A	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.94;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1196,126,0
chrVII	212731	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.95;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1227,129,0
chrVII	212869	.	G	A	1919	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.99;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1952,204,0
chrVII	213119	.	G	A	1118	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.92;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1151,120,0
chrVII	213175	.	G	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.81;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1320,135,0
chrVII	213220	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.73;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1554,162,0
chrVII	214904	.	G	A	2261	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.31;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2294,234,0
chrVII	222215	.	G	A	2668	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=13.4823;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.84;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2701,285,0
chrVII	222244	.	G	A	2924	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.4176;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.15;SB=-1.670e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2957,312,0
chrVII	222265	.	G	A	2557	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.31;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2590,279,0
chrVII	223151	.	T	C	1033	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.96;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1066,114,0
chrVII	223273	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.43;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1236,135,0
chrVII	223275	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.66;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1350,141,0
chrVII	223303	.	G	A	1477	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.43;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1510,156,0
chrVII	223507	.	G	A	706	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=16.81;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:75:739,75,0
chrVII	223519	.	G	A	736	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=17.12;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:78:769,78,0
chrVII	223550	.	T	C	1114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.540;QD=18.26;ReadPosRankSum=1.675;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1147,123,0
chrVII	223742	.	C	T	1582	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=18.83;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1615,168,0
chrVII	223756	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=17.01;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,70:75:99:1309,135,0
chrVII	223768	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.74;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1399,150,0
chrVII	223861	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.17;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1485,156,0
chrVII	223948	.	A	G	2005	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.56;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2038,219,0
chrVII	224029	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.04;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1309,135,0
chrVII	224098	.	A	G	1207	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.29;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1240,135,0
chrVII	224467	.	G	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=20.73;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1339,147,0
chrVII	224560	.	T	C	1357	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.86;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1390,150,0
chrVII	224572	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.36;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1392,147,0
chrVII	224584	.	A	G	1197	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.40;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1230,135,0
chrVII	224620	.	C	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.38;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1684,174,0
chrVII	224644	.	A	G	1398	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=16.07;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1431,156,0
chrVII	224653	.	G	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=16.59;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1526,168,0
chrVII	224828	.	C	T	2156	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=9.1385;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=16.21;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2189,231,0
chrVII	224869	.	G	A	836.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.274;DP=116;Dels=0.00;FS=8.182;HaplotypeScore=110.4222;MLEAC=1;MLEAF=0.500;MQ=42.76;MQ0=0;MQRankSum=2.113;QD=7.21;ReadPosRankSum=-4.925;SB=-2.210e+02	GT:AD:DP:GQ:PL	0/1:56,60:116:99:866,0,155
chrVII	224881	.	A	G	169.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.315;DP=113;Dels=0.00;FS=6.476;HaplotypeScore=105.2770;MLEAC=1;MLEAF=0.500;MQ=43.19;MQ0=0;MQRankSum=-3.940;QD=1.50;ReadPosRankSum=-0.713;SB=-3.101e+01	GT:AD:DP:GQ:PL	0/1:87,26:113:99:199,0,672
chrVII	224909	.	C	T	341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=66.7901;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=0.129;QD=5.01;ReadPosRankSum=1.370;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:42:374,42,0
chrVII	224983	.	G	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.09;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1503,165,0
chrVII	224994	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.46;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1565,174,0
chrVII	225389	.	C	T	997	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=20.35;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1030,108,0
chrVII	225550	.	A	G	1517	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.45;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1550,171,0
chrVII	225598	.	C	G	2160	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.82;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2193,243,0
chrVII	225759	.	A	G	1103	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.638;DP=57;Dels=0.00;FS=3.757;HaplotypeScore=2.7613;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.274;QD=19.35;ReadPosRankSum=-1.124;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1136,129,0
chrVII	226057	.	A	G	2997	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.05;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,129:130:99:3030,333,0
chrVII	226061	.	G	T	2812	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.47;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2845,303,0
chrVII	226152	.	C	T	2119	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.19;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2152,225,0
chrVII	226182	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-1.167;QD=20.36;ReadPosRankSum=1.694;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1906,213,0
chrVII	226902	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1035;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.29;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1616,171,0
chrVII	226920	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.26;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1458,156,0
chrVII	226965	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=83;Dels=0.00;FS=7.325;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.025;QD=15.48;ReadPosRankSum=2.331;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1318,144,0
chrVII	227280	.	A	G	1987	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.60;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2020,225,0
chrVII	227523	.	T	C	706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=20.149;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.135;QD=15.35;ReadPosRankSum=2.343;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:2,44:46:78:739,78,0
chrVII	227689	.	G	A	1772	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.95;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1805,189,0
chrVII	228148	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.08;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1559,162,0
chrVII	228350	.	C	T	2096	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.96;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2129,225,0
chrVII	228403	.	T	A	2463	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.8827;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=21.42;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2496,267,0
chrVII	228580	.	A	G	1011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.594;QD=20.22;ReadPosRankSum=0.416;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1044,114,0
chrVII	228659	.	C	G	2571	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.49;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2604,279,0
chrVII	228682	.	C	G	2262	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.96;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2295,249,0
chrVII	228702	.	A	C	1871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.532;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.68;MQ0=0;MQRankSum=-0.425;QD=17.65;ReadPosRankSum=1.667;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1904,204,0
chrVII	228739	.	C	T	1291	SnpCluster	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=12.30;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1324,138,0
chrVII	228740	.	C	T	1326	SnpCluster	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;QD=12.75;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1359,141,0
chrVII	228746	.	C	T	1289	SnpCluster	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=10.23;SB=-1.458e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:1322,138,0
chrVII	228769	.	G	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.18;MQ0=0;QD=8.70;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:1207,129,0
chrVII	228776	.	G	C	1140	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=8.64;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,129:132:99:1173,129,0
chrVII	228801	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.095;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=-1.398;QD=10.86;ReadPosRankSum=2.345;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:2,115:117:99:1304,120,0
chrVII	228955	.	G	A	1746	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.04;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1779,183,0
chrVII	229060	.	C	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=20.78;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,96:99:99:2090,222,0
chrVII	229174	.	G	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=20.40;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1726,180,0
chrVII	229302	.	A	G	1606	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.31;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1639,177,0
chrVII	230072	.	A	G	2758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.195;QD=20.89;ReadPosRankSum=1.678;SB=-1.537e+03	GT:AD:DP:GQ:PL	1/1:1,128:132:99:2791,315,0
chrVII	230207	.	A	G	3746.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=169;Dels=0.00;FS=11.785;HaplotypeScore=11.0046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.958;QD=22.17;ReadPosRankSum=2.947;SB=-1.652e+03	GT:AD:DP:GQ:PL	1/1:3,166:169:99:3746,417,0
chrVII	231712	.	A	G	2265	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.21;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2298,252,0
chrVII	232193	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.52;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,61:65:99:1367,144,0
chrVII	232615	.	T	A	1689	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.3992;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.41;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1722,180,0
chrVII	232997	.	C	T	2110	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.82;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2143,219,0
chrVII	235629	.	T	A	2084	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=14.1101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.81;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2117,228,0
chrVII	236277	.	C	T	2099	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.69;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:2132,222,0
chrVII	236530	.	A	C	1440	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1473,162,0
chrVII	236710	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.27;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1166,126,0
chrVII	236862	.	A	C	1458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.693;QD=20.83;ReadPosRankSum=1.683;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1491,162,0
chrVII	237052	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.43;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1190,129,0
chrVII	237114	.	A	G	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=1.466;QD=20.77;ReadPosRankSum=1.643;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1653,177,0
chrVII	237133	.	T	C	1568	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.10;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1601,177,0
chrVII	237207	.	C	T	1505	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.71;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1538,165,0
chrVII	237218	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.358;DP=90;Dels=0.00;FS=8.861;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.186;QD=19.03;ReadPosRankSum=3.358;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:4,86:90:99:1746,189,0
chrVII	240740	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=23.25;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1498,162,0
chrVII	241508	.	T	C	1497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=80;Dels=0.00;FS=16.330;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.325;QD=18.71;ReadPosRankSum=2.910;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:3,75:80:99:1530,165,0
chrVII	241708	.	T	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.93;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1301,135,0
chrVII	242055	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.53;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1303,144,0
chrVII	242295	.	T	A	1406	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.99;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1439,150,0
chrVII	242796	.	A	G	2924	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.97;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2957,330,0
chrVII	243089	.	G	A	2809	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.84;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2842,294,0
chrVII	243320	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=19.29;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1248,132,0
chrVII	243321	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=18.10;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1173,132,0
chrVII	243573	.	A	G	1727	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.584;QD=24.67;ReadPosRankSum=1.683;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1760,183,0
chrVII	243903	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=76;Dels=0.00;FS=3.041;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.683;QD=19.17;ReadPosRankSum=2.350;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:2,72:76:99:1490,162,0
chrVII	244125	.	A	G	3700.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.466;QD=23.72;ReadPosRankSum=1.710;SB=-1.870e+03	GT:AD:DP:GQ:PL	1/1:1,155:156:99:3700,402,0
chrVII	244314	.	A	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.00;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1507,162,0
chrVII	245148	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.08;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1733,186,0
chrVII	245422	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1130,117,0
chrVII	245594	.	C	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.81;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1558,162,0
chrVII	246143	.	G	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.85;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1425,150,0
chrVII	247651	.	G	A	2386	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.93;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2419,258,0
chrVII	248225	.	G	C	895	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.46;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:928,102,0
chrVII	248449	.	T	C	2441	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.244;QD=25.43;ReadPosRankSum=2.398;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:2,94:96:99:2474,267,0
chrVII	248522	.	A	G	2378	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=26.42;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2411,264,0
chrVII	249812	.	A	T	1646	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.95;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1679,183,0
chrVII	249907	.	T	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.86;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1304,144,0
chrVII	250156	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=4.075;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.130;QD=23.43;ReadPosRankSum=1.657;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1111,117,0
chrVII	250183	.	C	A	981	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.80;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1014,105,0
chrVII	250680	.	G	A	1515	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.96;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1548,165,0
chrVII	251327	.	A	G	1999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=90;Dels=0.00;FS=9.843;HaplotypeScore=8.0478;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.038;QD=22.21;ReadPosRankSum=2.394;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:2,87:90:99:2032,219,0
chrVII	251694	.	T	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.24;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1733,192,0
chrVII	252024	.	C	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1157,120,0
chrVII	252410	.	C	A	1631	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8451;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.34;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1664,171,0
chrVII	252658	.	G	A	657	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=14.93;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:72:690,72,0
chrVII	252804	.	A	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=68.0470;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=16.87;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,98:101:99:1737,192,0
chrVII	253731	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.19;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1726,180,0
chrVII	253916	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1642,177,0
chrVII	254177	.	A	G	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.611;QD=19.17;ReadPosRankSum=1.692;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1682,180,0
chrVII	254805	.	G	A	516.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;DP=77;Dels=0.00;FS=42.684;HaplotypeScore=4.1876;MLEAC=1;MLEAF=0.500;MQ=36.06;MQ0=0;MQRankSum=-3.500;QD=6.70;ReadPosRankSum=0.884;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,28:77:99:546,0,964
chrVII	256487	.	A	G	999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.5114;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=0.301;QD=21.26;ReadPosRankSum=1.657;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:99:1032,111,0
chrVII	256673	.	G	A	2246	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.64;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2279,240,0
chrVII	256814	.	T	C	665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.365;QD=17.50;ReadPosRankSum=1.550;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:78:698,78,0
chrVII	256831	.	T	C	700	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.50;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:733,81,0
chrVII	256952	.	C	T	1858	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.11;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1891,198,0
chrVII	257078	.	A	T	1528	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.86;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1561,165,0
chrVII	257091	.	T	G	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=1.003;QD=17.37;ReadPosRankSum=1.687;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,75:79:99:1405,156,0
chrVII	257334	.	G	A	1938	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.4614;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.53;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1971,207,0
chrVII	257349	.	T	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.11;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1979,210,0
chrVII	267395	.	T	G	175.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.595;DP=54;Dels=0.00;FS=83.166;HaplotypeScore=2.9764;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=1.330;QD=3.24;ReadPosRankSum=-4.897;SB=-5.655e-03	GT:AD:DP:GQ:PL	0/1:24,30:54:99:205,0,380
chrVII	267458	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=8.2204;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.04;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1004,105,0
chrVII	267569	.	T	C	2271	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2304,252,0
chrVII	269919	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.91;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1527,168,0
chrVII	270374	.	A	G	1992	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8529;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.65;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2025,228,0
chrVII	270674	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;MQRankSum=-0.967;QD=18.92;ReadPosRankSum=1.687;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1490,165,0
chrVII	270688	.	T	C	1586	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=18.66;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1619,180,0
chrVII	271816	.	C	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.90;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1585,168,0
chrVII	272795	.	T	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.34;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1940,207,0
chrVII	273424	.	C	T	2163	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.53;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2196,231,0
chrVII	273458	.	G	A	1701	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.25;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1734,189,0
chrVII	273503	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.8734;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.41;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1803,195,0
chrVII	274142	.	G	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.20;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1671,174,0
chrVII	274448	.	A	C	474	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.842;QD=13.54;ReadPosRankSum=1.634;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:1,34:35:54:507,54,0
chrVII	275009	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=11.1440;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.323;QD=20.71;ReadPosRankSum=1.674;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1255,135,0
chrVII	275322	.	C	T	2119	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.54;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2152,222,0
chrVII	275701	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.47;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1186,129,0
chrVII	275758	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.957;QD=20.39;ReadPosRankSum=1.629;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1399,153,0
chrVII	275782	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.824;QD=18.81;ReadPosRankSum=1.619;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,60:63:99:1218,135,0
chrVII	275819	.	C	G	1563	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4495;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.33;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1596,168,0
chrVII	276180	.	G	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.85;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1488,153,0
chrVII	276276	.	C	T	1432	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1465,153,0
chrVII	276379	.	G	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.15;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1199,132,0
chrVII	276429	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.63;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1337,144,0
chrVII	276488	.	G	T	1466	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.9712;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.79;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1499,162,0
chrVII	276671	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.64;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1478,156,0
chrVII	278618	.	C	G	354	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.70;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:42:387,42,0
chrVII	280134	.	C	A	110.26	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=3.80;SB=-3.193e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:15:143,15,0
chrVII	280135	.	T	A	158.06	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=5.27;SB=-3.211e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:21:191,21,0
chrVII	283530	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=4.624;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.777;QD=17.57;ReadPosRankSum=0.239;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:98:1052,98,0
chrVII	284212	.	C	G	1704	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=10.6706;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.03;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1737,186,0
chrVII	284855	.	A	G	1818	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1851,204,0
chrVII	286047	.	C	T	2098	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.4480;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.19;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2131,228,0
chrVII	286154	.	G	C	1804	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.38;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1837,201,0
chrVII	286632	.	A	G	2641	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2674,285,0
chrVII	287266	.	G	A	2671	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.73;SB=-1.456e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2704,285,0
chrVII	287653	.	A	C	1975	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.97;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:2008,222,0
chrVII	288473	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.16;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1444,150,0
chrVII	289212	.	T	C	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=76;Dels=0.00;FS=6.439;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.148;QD=20.64;ReadPosRankSum=2.384;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:2,73:76:99:1602,177,0
chrVII	290162	.	G	C	2455	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.52;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2488,273,0
chrVII	291088	.	C	G	2027	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.78;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2060,222,0
chrVII	291494	.	A	G	2001	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0284;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.65;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:2034,216,0
chrVII	291643	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=69.5380;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=15.95;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1325,147,0
chrVII	291653	.	A	G	51.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;DP=107;Dels=0.00;FS=7.480;HaplotypeScore=17.7162;MLEAC=1;MLEAF=0.500;MQ=52.07;MQ0=0;MQRankSum=0.805;QD=0.48;ReadPosRankSum=3.556;SB=-1.130e+03	GT:AD:DP:GQ:PL	0/1:5,99:107:9:81,0,9
chrVII	291925	.	T	C	2133	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.70;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2166,234,0
chrVII	291992	.	G	A	2802	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=22.24;SB=-1.444e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2835,303,0
chrVII	293254	.	T	C	1368	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.4257;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=1.421;QD=17.32;ReadPosRankSum=-0.533;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1401,153,0
chrVII	293255	.	G	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.4257;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.28;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1459,153,0
chrVII	294111	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.23;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1078,111,0
chrVII	294404	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=59;Dels=0.00;FS=2.369;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.506;QD=16.83;ReadPosRankSum=3.207;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:5,54:59:99:1026,114,0
chrVII	294462	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1170,126,0
chrVII	295605	.	C	G	1556	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1589,174,0
chrVII	296170	.	G	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1475,156,0
chrVII	296817	.	A	G	3526.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.51;SB=-1.554e+03	GT:AD:DP:GQ:PL	1/1:0,149:150:99:3526,375,0
chrVII	297533	.	T	A	1485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.632;QD=23.57;ReadPosRankSum=1.622;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1518,162,0
chrVII	298874	.	C	T	3110	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.11;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,127:129:99:3143,330,0
chrVII	299216	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=16.29;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1173,129,0
chrVII	299249	.	G	A	963	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.89;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:996,102,0
chrVII	299630	.	C	G	1195	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1228,135,0
chrVII	299664	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.25;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1257,132,0
chrVII	299945	.	T	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.96;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1710,183,0
chrVII	300190	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.55;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1025,105,0
chrVII	300493	.	T	C	1598	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.477;QD=23.16;ReadPosRankSum=1.682;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1631,180,0
chrVII	300933	.	C	T	1629	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7131;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.36;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1662,174,0
chrVII	300952	.	T	C	1631	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.14;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1664,183,0
chrVII	301018	.	T	C	1500	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=1.170;QD=20.27;ReadPosRankSum=0.094;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1533,165,0
chrVII	301042	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.21;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1169,132,0
chrVII	301132	.	G	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3924;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.82;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1294,138,0
chrVII	301260	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.71;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1432,147,0
chrVII	301324	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.72;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1351,141,0
chrVII	301405	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.05;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1665,180,0
chrVII	301525	.	T	A	1454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=4.063;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.022;QD=18.17;ReadPosRankSum=1.688;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1487,159,0
chrVII	301819	.	G	T	1244	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.04;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1277,132,0
chrVII	301891	.	A	T	762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.193;QD=16.93;ReadPosRankSum=1.655;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:84:795,84,0
chrVII	302104	.	A	G	703	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=15.98;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:736,81,0
chrVII	302319	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7934;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.52;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1422,150,0
chrVII	302394	.	A	G	1649	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.61;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1682,180,0
chrVII	302483	.	G	A	759	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.08;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:792,84,0
chrVII	302788	.	G	A	1277	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1310,138,0
chrVII	303261	.	T	C	1782	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.41;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1815,192,0
chrVII	303645	.	T	C	1135	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.57;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1168,126,0
chrVII	303887	.	C	T	1817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.654;QD=20.42;ReadPosRankSum=1.343;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1850,192,0
chrVII	304107	.	G	A	2096	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.136;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.322;QD=22.06;ReadPosRankSum=-0.987;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:1,93:95:99:2129,209,0
chrVII	304214	.	T	A	4524.01	PASS	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.27;SB=-2.539e+03	GT:AD:DP:GQ:PL	1/1:0,179:179:99:4524,466,0
chrVII	304566	.	T	C	2889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.9816;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.119;QD=23.68;ReadPosRankSum=1.925;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:2,120:122:99:2922,318,0
chrVII	304604	.	G	A	1975	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=20.36;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2008,210,0
chrVII	304609	.	A	T	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.336;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-1.054;QD=19.79;ReadPosRankSum=1.661;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1953,207,0
chrVII	305019	.	T	C	2356	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8543;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.10;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2389,270,0
chrVII	305928	.	G	C	1515	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.47;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1548,171,0
chrVII	306050	.	A	G	2179	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.63;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2212,243,0
chrVII	306650	.	C	T	2310	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.06;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2343,246,0
chrVII	307064	.	C	G	434	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=15.50;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:51:467,51,0
chrVII	307221	.	A	T	423	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=62.26;MQ0=0;QD=18.39;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:48:456,48,0
chrVII	307499	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.25;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1415,153,0
chrVII	307742	.	T	C	975	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.90;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1008,114,0
chrVII	307868	.	C	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.47;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1686,177,0
chrVII	308800	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.121;QD=19.84;ReadPosRankSum=1.692;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1759,189,0
chrVII	309574	.	T	C	1176	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.19;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1209,132,0
chrVII	309796	.	G	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1755,195,0
chrVII	310446	.	C	G	2069	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=12.8343;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.49;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:2102,225,0
chrVII	310627	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-1.059;QD=19.26;ReadPosRankSum=1.684;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1420,153,0
chrVII	310899	.	G	A	1133	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.60;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1166,123,0
chrVII	310904	.	T	A	1071	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.670;QD=19.12;ReadPosRankSum=1.609;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1104,114,0
chrVII	310905	.	T	A	1050	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.75;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1083,114,0
chrVII	311272	.	C	T	1806	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.57;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1839,192,0
chrVII	311329	.	C	T	2734	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.53;SB=-1.648e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2767,294,0
chrVII	311762	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.77;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1388,153,0
chrVII	311795	.	A	T	1481	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1514,159,0
chrVII	312743	.	T	G	1826	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.48;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1859,201,0
chrVII	312897	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.42;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1596,165,0
chrVII	312966	.	C	T	1844	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.26;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1877,198,0
chrVII	314032	.	A	G	3210.99	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.09;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,126:128:99:3244,354,0
chrVII	314428	.	T	C	3034	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=16.3982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-1.393e+03	GT:AD:DP:GQ:PL	1/1:0,133:135:99:3067,336,0
chrVII	314617	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.29;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1437,153,0
chrVII	315021	.	G	A	1140	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.35;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1173,132,0
chrVII	315309	.	G	A	1363	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1396,147,0
chrVII	315504	.	A	G	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.732;QD=21.03;ReadPosRankSum=1.688;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1673,186,0
chrVII	316175	.	G	A	2252	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.05;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2285,240,0
chrVII	316329	.	G	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1855,201,0
chrVII	316588	.	G	A	2338	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=19.16;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2371,258,0
chrVII	316663	.	C	A	1352	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1385,153,0
chrVII	318614	.	T	C	4098.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=7.4247;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.763;QD=24.25;ReadPosRankSum=2.406;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:2,167:169:99:4098,450,0
chrVII	319280	.	A	G	2041	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=20.62;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2074,231,0
chrVII	319295	.	A	G	2286	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=22.41;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2319,249,0
chrVII	319346	.	C	T	2498	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=23.57;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2531,264,0
chrVII	319754	.	G	A	16.14	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.00;MQ0=0;MQRankSum=-0.736;QD=5.38;ReadPosRankSum=-0.736;SB=-1.271e+00	GT:AD:DP:GQ:PL	0/1:1,2:3:20:46,0,20
chrVII	319883	.	C	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=18.94;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1302,135,0
chrVII	319966	.	A	C	1045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=63;Dels=0.00;FS=5.399;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=0.820;QD=16.59;ReadPosRankSum=2.887;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:3,59:63:99:1078,117,0
chrVII	319967	.	A	C	1043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=1.164;QD=17.10;ReadPosRankSum=1.619;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1076,117,0
chrVII	320181	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.06;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1224,126,0
chrVII	320414	.	A	G	2455	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.38;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,102:105:99:2488,270,0
chrVII	320584	.	T	C	1987	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.48;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2020,216,0
chrVII	320828	.	T	C	2628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=125;Dels=0.00;FS=5.058;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.568;QD=21.02;ReadPosRankSum=1.704;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:1,124:125:99:2661,285,0
chrVII	320959	.	C	T	1852	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0702;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.13;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,89:92:99:1885,201,0
chrVII	321024	.	G	A	1989	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2451;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.35;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2022,210,0
chrVII	321469	.	C	A	462	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.48;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:51:495,51,0
chrVII	321600	.	G	A	372	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.88;SB=-6.793e-03	GT:AD:DP:GQ:PL	1/1:0,17:17:42:405,42,0
chrVII	321634	.	A	T	567	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.81;SB=-6.523e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:63:600,63,0
chrVII	321718	.	G	C	480	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=17.14;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,27:28:57:513,57,0
chrVII	321972	.	T	A	1819	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.93;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1852,195,0
chrVII	323433	.	A	T	652	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.73;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:72:685,72,0
chrVII	323441	.	C	T	748	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.67;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:81:781,81,0
chrVII	323883	.	G	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.63;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1439,156,0
chrVII	323920	.	A	T	1610	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9110;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.18;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1643,174,0
chrVII	323971	.	A	T	1866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=6.6723;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.179;QD=21.45;ReadPosRankSum=1.653;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1899,204,0
chrVII	324649	.	A	C	1296	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.455;QD=19.06;ReadPosRankSum=1.382;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:2,65:68:99:1329,147,0
chrVII	325250	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=24.98;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2106,222,0
chrVII	329109	.	A	G	2315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.420;QD=20.67;ReadPosRankSum=1.670;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,110:112:99:2348,252,0
chrVII	333191	.	T	C	2301	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2334,255,0
chrVII	334704	.	T	C	1968	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.4540;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=19.88;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2001,216,0
chrVII	334767	.	T	A	1067	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.617;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-1.732;QD=11.60;ReadPosRankSum=-1.732;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1100,117,0
chrVII	334768	.	T	G	1068	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=11.61;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1101,120,0
chrVII	334769	.	T	A	1133	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;MQRankSum=-0.111;QD=12.05;ReadPosRankSum=1.695;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1166,120,0
chrVII	334770	.	T	A	1084	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=11.41;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1117,117,0
chrVII	336790	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.60;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1773,186,0
chrVII	336889	.	G	A	2231	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.6818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2264,246,0
chrVII	337273	.	A	G	1896	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.84;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1929,204,0
chrVII	338951	.	T	A	830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.207;QD=19.76;ReadPosRankSum=1.329;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:2,40:42:90:863,90,0
chrVII	339606	.	G	T	1391	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.18;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1424,156,0
chrVII	340285	.	G	A	1189	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1222,129,0
chrVII	340507	.	A	C	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=3.217;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.040;QD=21.06;ReadPosRankSum=1.692;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1844,204,0
chrVII	340586	.	C	T	2360	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=10.5342;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.58;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2393,249,0
chrVII	341281	.	G	A	2548	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.04;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2581,270,0
chrVII	341659	.	C	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.22;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1646,180,0
chrVII	342051	.	A	G	2152	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.91;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2185,237,0
chrVII	344352	.	G	A	3538.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.1978;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.09;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3538,364,0
chrVII	347577	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1519,168,0
chrVII	347649	.	C	T	1796	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.45;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1829,198,0
chrVII	348146	.	A	G	14.18	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;DP=25;Dels=0.00;FS=44.587;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=45.33;MQ0=0;MQRankSum=-4.243;QD=0.57;ReadPosRankSum=0.684;SB=-2.501e+00	GT:AD:DP:GQ:PL	0/1:11,14:25:44:44,0,277
chrVII	348148	.	G	A	14.18	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DP=25;Dels=0.00;FS=44.587;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=45.33;MQ0=0;MQRankSum=-4.243;QD=0.57;ReadPosRankSum=1.505;SB=-5.602e+00	GT:AD:DP:GQ:PL	0/1:11,14:25:44:44,0,210
chrVII	348153	.	T	C	21.04	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;DP=27;Dels=0.00;FS=35.781;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-3.843;QD=0.78;ReadPosRankSum=0.333;SB=-8.989e+00	GT:AD:DP:GQ:PL	0/1:8,18:27:51:51,0,165
chrVII	348156	.	T	C	53.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;DP=25;Dels=0.00;FS=35.781;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=40.17;MQ0=0;MQRankSum=-3.843;QD=2.12;ReadPosRankSum=1.120;SB=-1.299e+01	GT:AD:DP:GQ:PL	0/1:7,18:25:83:83,0,130
chrVII	348160	.	G	A	58.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;DP=28;Dels=0.00;FS=26.628;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=0;MQRankSum=-3.340;QD=2.07;ReadPosRankSum=1.877;SB=-1.999e+01	GT:AD:DP:GQ:PL	0/1:6,20:28:85:88,0,85
chrVII	348161	.	A	T	60.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;DP=27;Dels=0.00;FS=33.675;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=0;MQRankSum=-3.528;QD=2.22;ReadPosRankSum=1.662;SB=-1.699e+01	GT:AD:DP:GQ:PL	0/1:6,21:27:89:90,0,89
chrVII	348923	.	T	G	1919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.060;QD=21.81;ReadPosRankSum=0.856;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1952,216,0
chrVII	350521	.	T	A	1663	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.7761;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.303;QD=20.79;ReadPosRankSum=2.672;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:3,77:80:99:1696,177,0
chrVII	351063	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.62;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1775,192,0
chrVII	351511	.	G	C	1082	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.64;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1115,120,0
chrVII	352151	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.52;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1224,126,0
chrVII	352206	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.08;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1614,177,0
chrVII	352268	.	T	C	1943	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.13;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1976,216,0
chrVII	352556	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5786;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.73;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2065,225,0
chrVII	352658	.	T	C	1842	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.19;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1875,201,0
chrVII	352719	.	G	A	1792	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3318;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=18.10;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1825,198,0
chrVII	352838	.	T	C	2006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0517;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;MQRankSum=-0.339;QD=21.57;ReadPosRankSum=1.694;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2039,225,0
chrVII	352969	.	C	A	2258	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.81;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2291,237,0
chrVII	353297	.	G	C	1968	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.15;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2001,213,0
chrVII	353381	.	A	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.21;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1306,141,0
chrVII	353650	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.67;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1005,114,0
chrVII	353777	.	G	A	1469	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.69;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1502,156,0
chrVII	353846	.	A	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.22;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1877,201,0
chrVII	353852	.	G	T	1854	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.07;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1887,198,0
chrVII	354320	.	T	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=25.22;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1496,156,0
chrVII	354360	.	C	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.90;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1391,147,0
chrVII	354386	.	G	A	830	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=15.09;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:863,93,0
chrVII	354395	.	T	G	767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;MQRankSum=0.335;QD=12.37;ReadPosRankSum=1.676;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:90:800,90,0
chrVII	354432	.	C	T	844	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.0748;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=12.79;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:93:877,93,0
chrVII	354473	.	C	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.52;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1518,159,0
chrVII	354732	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=58;Dels=0.00;FS=3.054;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-1.063;QD=21.86;ReadPosRankSum=2.364;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:2,55:58:99:1301,141,0
chrVII	354740	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=23.89;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1371,144,0
chrVII	354898	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.90;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1911,204,0
chrVII	355076	.	A	C	1038	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.58;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1071,114,0
chrVII	355078	.	T	C	1009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=7.147;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.298;QD=18.69;ReadPosRankSum=2.359;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1042,114,0
chrVII	355098	.	T	C	1206	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-1.353;QD=18.84;ReadPosRankSum=1.678;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1239,135,0
chrVII	355179	.	A	G	1595	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=18.76;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1628,174,0
chrVII	355188	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=87;Dels=0.00;FS=9.645;HaplotypeScore=5.0258;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-1.232;QD=17.59;ReadPosRankSum=2.337;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1563,168,0
chrVII	355193	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.0258;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=18.24;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1547,165,0
chrVII	355225	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=15.99;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1248,129,0
chrVII	355276	.	C	G	1020	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=16.72;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1053,114,0
chrVII	355292	.	G	A	781	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.02;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:814,84,0
chrVII	355346	.	C	T	661	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5173;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=16.12;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:75:694,75,0
chrVII	355706	.	C	T	1093	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.26;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1126,126,0
chrVII	355865	.	T	C	1644	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.81;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1677,186,0
chrVII	356296	.	C	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.42;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1101,117,0
chrVII	356351	.	T	C	979	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.98;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1012,111,0
chrVII	356393	.	A	T	889	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.14;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:922,96,0
chrVII	356416	.	C	A	992	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.24;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1025,105,0
chrVII	356669	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.60;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1189,126,0
chrVII	357041	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.92;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1156,120,0
chrVII	357061	.	T	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.10;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1058,117,0
chrVII	357140	.	A	G	737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=46;Dels=0.00;FS=7.169;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.028;QD=16.02;ReadPosRankSum=2.341;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:2,43:46:84:770,84,0
chrVII	357149	.	G	A	843	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=15.05;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,52:56:96:876,96,0
chrVII	357208	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.98;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1330,144,0
chrVII	357335	.	A	G	1709	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.74;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1742,192,0
chrVII	357841	.	T	C	1672	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.786;DP=80;Dels=0.00;FS=5.788;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.241;QD=20.90;ReadPosRankSum=2.912;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:3,77:80:99:1705,192,0
chrVII	357937	.	T	C	1522	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.29;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1555,174,0
chrVII	358124	.	A	G	258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.074;DP=92;Dels=0.00;FS=7.056;HaplotypeScore=102.4262;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.180;QD=2.80;ReadPosRankSum=-6.816;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:49,43:92:33:291,33,0
chrVII	361547	.	A	G	2227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=104;Dels=0.00;FS=16.229;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.836;QD=21.41;ReadPosRankSum=3.353;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:4,99:104:99:2260,240,0
chrVII	366797	.	T	A	21.04	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DP=73;Dels=0.00;FS=42.000;HaplotypeScore=10.3435;MLEAC=1;MLEAF=0.500;MQ=57.10;MQ0=0;MQRankSum=0.825;QD=0.29;ReadPosRankSum=-3.947;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,14:73:51:51,0,373
chrVII	370360	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=11.0648;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.34;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1464,159,0
chrVII	370396	.	G	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.2427;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.39;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1533,168,0
chrVII	370641	.	G	T	2600	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.64;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2633,276,0
chrVII	370765	.	C	T	1490	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.87;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1523,165,0
chrVII	371489	.	T	G	1380	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.392;QD=22.62;ReadPosRankSum=1.675;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1413,147,0
chrVII	371699	.	G	A	1837	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.61;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1870,192,0
chrVII	372033	.	G	C	2107	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.22;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2140,240,0
chrVII	372223	.	T	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.31;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1289,141,0
chrVII	372417	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.08;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1767,183,0
chrVII	373531	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=5.772;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.815;QD=17.00;ReadPosRankSum=1.274;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1189,132,0
chrVII	373580	.	T	C	1664	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.5227;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.54;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1697,183,0
chrVII	373624	.	C	T	2314	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.86;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2347,243,0
chrVII	373646	.	C	T	2194	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.9669;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=22.39;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2227,240,0
chrVII	373713	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.86;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1563,168,0
chrVII	373766	.	C	T	1829	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.6358;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.30;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1862,198,0
chrVII	373940	.	C	G	2460	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.77;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2493,264,0
chrVII	373957	.	A	T	2174	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.58;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2207,231,0
chrVII	373958	.	C	T	2179	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=18.16;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2212,231,0
chrVII	374582	.	T	C	1527	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.13;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1560,171,0
chrVII	374962	.	C	G	849	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.77;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:93:882,93,0
chrVII	374973	.	G	A	793	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.34;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:826,87,0
chrVII	375001	.	G	A	1001	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1034,111,0
chrVII	375036	.	G	A	1248	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1281,132,0
chrVII	375227	.	A	T	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.599;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.854;QD=19.73;ReadPosRankSum=1.635;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1434,153,0
chrVII	375494	.	G	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.17;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1546,165,0
chrVII	376112	.	T	A	1795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.514;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.634;QD=21.89;ReadPosRankSum=1.648;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1828,189,0
chrVII	376235	.	C	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.41;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1660,174,0
chrVII	376314	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.3057;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.87;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1979,207,0
chrVII	376364	.	A	G	2696	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.92;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2729,291,0
chrVII	376705	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.7398;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.50;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2312,243,0
chrVII	376883	.	A	T	1977	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.26;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2010,210,0
chrVII	377024	.	C	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.97;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1611,171,0
chrVII	377048	.	C	T	1077	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.10;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1110,117,0
chrVII	377049	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.32;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1124,117,0
chrVII	377277	.	A	G	2312	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=10.295;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.749;QD=23.84;ReadPosRankSum=2.374;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2345,249,0
chrVII	377833	.	T	C	2290	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.61;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2323,255,0
chrVII	377933	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.24;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1501,153,0
chrVII	378078	.	C	A	1666	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.72;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1699,177,0
chrVII	378112	.	T	C	1319	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.82;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1352,147,0
chrVII	378347	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.6921;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=23.72;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1883,192,0
chrVII	378538	.	T	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.96;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1640,171,0
chrVII	378844	.	C	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.94;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1289,141,0
chrVII	378973	.	A	G	1402	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.93;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1435,156,0
chrVII	379046	.	C	T	931	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.05;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:964,102,0
chrVII	379053	.	C	T	907	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.20;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:940,99,0
chrVII	379420	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.635;QD=21.50;ReadPosRankSum=1.501;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1323,141,0
chrVII	379480	.	C	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1940;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=21.02;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1126,123,0
chrVII	379579	.	T	C	1725	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=22.40;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1758,192,0
chrVII	379601	.	C	T	1535	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=23.98;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1568,162,0
chrVII	379677	.	T	C	1144	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.07;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1177,132,0
chrVII	379743	.	A	G	1429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.7651;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.685;QD=19.58;ReadPosRankSum=1.495;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1462,162,0
chrVII	379781	.	G	C	1563	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.65;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1596,177,0
chrVII	379937	.	T	C	1729	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.7916;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.023;QD=22.45;ReadPosRankSum=1.686;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1762,195,0
chrVII	380177	.	A	T	769	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:802,84,0
chrVII	380314	.	A	G	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.693;QD=20.39;ReadPosRankSum=1.654;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1848,204,0
chrVII	380368	.	T	C	2026	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.76;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2059,222,0
chrVII	380458	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.14;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1028,108,0
chrVII	380492	.	C	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.92;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1142,117,0
chrVII	380930	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.5974;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.39;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1412,153,0
chrVII	381052	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.47;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1143,126,0
chrVII	381267	.	A	G	1010	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1043,114,0
chrVII	381313	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.17;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1696,177,0
chrVII	381438	.	A	G	1383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.759;DP=88;Dels=0.00;FS=5.841;HaplotypeScore=3.0306;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-1.288;QD=15.72;ReadPosRankSum=2.920;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1416,150,0
chrVII	381441	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=15.76;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1341,147,0
chrVII	381517	.	C	G	2650	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=16.7105;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.23;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,129:131:99:2683,291,0
chrVII	381897	.	G	A	1706	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.96;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1739,186,0
chrVII	382210	.	A	G	1360	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.67;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1393,150,0
chrVII	382476	.	A	G	1969	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.44;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2002,213,0
chrVII	383348	.	T	C	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=3.263;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.294;QD=22.13;ReadPosRankSum=1.667;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1206,132,0
chrVII	383435	.	T	C	1370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=62;Dels=0.00;FS=6.682;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.219;QD=22.10;ReadPosRankSum=2.371;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1403,153,0
chrVII	383573	.	G	T	3296.01	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.497e+03	GT:AD:DP:GQ:PL	1/1:0,130:132:99:3296,348,0
chrVII	384239	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.79;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1322,141,0
chrVII	384382	.	A	G	929	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.64;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:962,105,0
chrVII	384425	.	T	C	835	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.77;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:93:868,93,0
chrVII	384641	.	C	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.73;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1493,165,0
chrVII	384678	.	G	A	1511	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.70;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1544,171,0
chrVII	384785	.	T	C	581	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=14.90;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:614,72,0
chrVII	384786	.	G	A	596	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=15.28;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:629,69,0
chrVII	384796	.	A	G	530	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=14.72;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:63:563,63,0
chrVII	384832	.	A	G	609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=42;Dels=0.00;FS=5.441;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.248;QD=14.50;ReadPosRankSum=1.650;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:72:642,72,0
chrVII	385194	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=20.39;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1073,117,0
chrVII	385243	.	G	A	997	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.55;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1030,111,0
chrVII	385495	.	A	C	556	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.7570;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=12.93;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:66:589,66,0
chrVII	385519	.	T	C	423	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=9.40;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:51:456,51,0
chrVII	385522	.	G	T	385	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;QD=8.56;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:45:418,45,0
chrVII	385525	.	A	G	389	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=9.26;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:48:422,48,0
chrVII	385531	.	C	T	326	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.68;MQ0=0;QD=7.76;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:39:359,39,0
chrVII	385534	.	C	T	298	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=7.45;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:39:331,39,0
chrVII	385540	.	A	G	284	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=0;QD=7.47;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:36:317,36,0
chrVII	385542	.	T	C	232.41	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=0;MQRankSum=-1.003;QD=6.12;ReadPosRankSum=1.641;SB=-3.744e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:13:265,13,0
chrVII	385555	.	C	A	347	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=8.07;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:42:380,42,0
chrVII	385570	.	T	C	392	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.85;MQ0=0;QD=9.33;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:45:425,45,0
chrVII	385619	.	C	T	742	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=17.26;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:775,81,0
chrVII	385651	.	T	G	991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.372;QD=20.65;ReadPosRankSum=1.660;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1024,114,0
chrVII	386494	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=19.21;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1301,138,0
chrVII	386539	.	T	C	715	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=33.93;MQ0=0;QD=13.49;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:81:748,81,0
chrVII	386548	.	C	A	700	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=13.46;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:733,81,0
chrVII	386549	.	A	C	682	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.73;MQ0=0;QD=13.12;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:715,81,0
chrVII	386557	.	A	C	679	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.96;MQ0=0;QD=13.06;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:78:712,78,0
chrVII	386563	.	T	C	577	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=11.78;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:69:610,69,0
chrVII	386581	.	G	A	581	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.02;MQ0=0;QD=13.20;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:66:614,66,0
chrVII	386593	.	C	T	461	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.66;MQ0=0;QD=12.13;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:54:494,54,0
chrVII	386596	.	C	T	360	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.29;MQ0=0;QD=9.23;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:48:393,48,0
chrVII	386608	.	G	A	602	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=13.68;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:69:635,69,0
chrVII	386978	.	C	G	921	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=42.10;MQ0=0;QD=16.45;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:954,105,0
chrVII	386979	.	G	C	910	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=15.96;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:943,102,0
chrVII	387637	.	T	C	1764	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.4178;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.19;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1797,198,0
chrVII	387793	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=4.586;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.276;QD=18.53;ReadPosRankSum=1.582;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1330,141,0
chrVII	387970	.	T	A	822	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=17.49;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:855,90,0
chrVII	387977	.	T	C	922	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.49;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:955,102,0
chrVII	387979	.	G	A	919	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=20.42;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:952,102,0
chrVII	388315	.	T	C	2090	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2062;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=1.535;QD=23.48;ReadPosRankSum=1.457;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:2123,237,0
chrVII	388627	.	C	T	2337	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.40;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2370,249,0
chrVII	388740	.	A	T	1563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=76;Dels=0.00;FS=2.693;HaplotypeScore=9.5848;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.483;QD=20.57;ReadPosRankSum=2.350;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1596,168,0
chrVII	389105	.	G	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.12;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2180,225,0
chrVII	389250	.	G	T	2249	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.82;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2282,237,0
chrVII	389325	.	A	G	2670	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.02;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2703,294,0
chrVII	389352	.	A	G	2755	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.36;SB=-1.616e+03	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2788,294,0
chrVII	389508	.	T	C	1708	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.47;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1741,189,0
chrVII	389529	.	C	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.42;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1554,162,0
chrVII	389574	.	A	T	1464	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.8998;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.77;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1497,162,0
chrVII	389751	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.182;QD=21.55;ReadPosRankSum=1.687;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1671,183,0
chrVII	390097	.	T	G	1114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=7.194;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.213;QD=21.42;ReadPosRankSum=2.355;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:1147,126,0
chrVII	390234	.	T	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.10;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1835,192,0
chrVII	390274	.	A	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0682;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1716,180,0
chrVII	390388	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.73;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1197,123,0
chrVII	390472	.	C	G	2002	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.01;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2035,219,0
chrVII	390921	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.15;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1725,189,0
chrVII	391138	.	G	T	1478	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.87;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1511,159,0
chrVII	391186	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.55;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1273,141,0
chrVII	391249	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.55;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1776,186,0
chrVII	391279	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.70;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1604,174,0
chrVII	391475	.	T	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.62;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1621,171,0
chrVII	391624	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.577;QD=20.95;ReadPosRankSum=1.658;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1981,216,0
chrVII	391649	.	C	T	1924	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.69;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1957,204,0
chrVII	392010	.	G	A	2316	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.05;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2349,255,0
chrVII	392315	.	T	C	2019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.420;QD=20.19;ReadPosRankSum=1.697;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2052,222,0
chrVII	392382	.	G	A	2420	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.62;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2453,255,0
chrVII	392525	.	C	T	1890	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.92;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1923,210,0
chrVII	392603	.	T	C	2349	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.6191;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=21.35;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2382,264,0
chrVII	393228	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.40;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1317,144,0
chrVII	393326	.	T	C	1416	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.23;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1449,162,0
chrVII	393632	.	C	T	1493	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.62;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1526,162,0
chrVII	393726	.	G	A	2567	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.77;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2600,273,0
chrVII	393780	.	G	A	2109	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.52;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2142,231,0
chrVII	394219	.	T	C	1662	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.41;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1695,183,0
chrVII	394369	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.65;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1709,189,0
chrVII	394511	.	T	A	779	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=3.865;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=-0.309;QD=13.67;ReadPosRankSum=1.609;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:87:812,87,0
chrVII	394550	.	G	C	516	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=8.60;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:60:549,60,0
chrVII	394560	.	A	G	450	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=7.89;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:54:483,54,0
chrVII	394643	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.182;QD=18.29;ReadPosRankSum=1.622;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1185,129,0
chrVII	394661	.	A	G	1153	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=17.21;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1186,129,0
chrVII	394918	.	G	A	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.91;SB=-3.077e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:6:58,6,0
chrVII	394922	.	G	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.63;SB=-3.077e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:6:54,6,0
chrVII	394946	.	A	G	81.51	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=4.08;SB=-2.952e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:12:114,12,0
chrVII	394959	.	T	G	94.26	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=4.71;SB=-2.728e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:15:127,15,0
chrVII	395210	.	A	G	918	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=26.23;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:99:951,99,0
chrVII	395239	.	A	G	813	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.58;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:93:846,93,0
chrVII	395241	.	C	G	801	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.25;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:834,90,0
chrVII	395359	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.72;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1380,144,0
chrVII	395553	.	C	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.2252;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.16;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1695,177,0
chrVII	395608	.	G	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.42;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1381,147,0
chrVII	395734	.	T	C	1011	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=15.32;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:66:99:1044,117,0
chrVII	395752	.	G	C	1046	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.43;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1079,117,0
chrVII	395818	.	T	A	1041	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.64;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1074,114,0
chrVII	396018	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.26;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1324,144,0
chrVII	396269	.	A	G	1515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.746;QD=17.02;ReadPosRankSum=2.391;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:2,82:89:99:1548,168,0
chrVII	396686	.	A	T	2560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.391;QD=20.65;ReadPosRankSum=1.704;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2593,282,0
chrVII	397325	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.182;QD=21.05;ReadPosRankSum=1.677;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1380,153,0
chrVII	397613	.	A	G	900	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.31;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:933,99,0
chrVII	397681	.	T	G	567	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=15.32;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,36:37:66:600,66,0
chrVII	397692	.	A	G	605	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=16.35;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:72:638,72,0
chrVII	397929	.	T	G	1054	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.57;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1087,117,0
chrVII	397937	.	A	G	959	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.82;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:992,108,0
chrVII	399494	.	T	C	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.144;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.367;QD=19.54;ReadPosRankSum=1.680;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1342,144,0
chrVII	399537	.	T	A	1284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=6.477;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.341;QD=18.61;ReadPosRankSum=2.379;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1317,138,0
chrVII	400162	.	T	C	1248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=12.304;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.102;QD=18.09;ReadPosRankSum=1.681;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1281,141,0
chrVII	400432	.	A	G	649	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=24.96;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,25:26:72:682,72,0
chrVII	400572	.	A	T	109.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;DP=51;Dels=0.02;FS=47.671;HaplotypeScore=5.8778;MLEAC=1;MLEAF=0.500;MQ=53.15;MQ0=0;MQRankSum=-0.543;QD=2.14;ReadPosRankSum=-3.955;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:29,21:50:99:139,0,273
chrVII	401117	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.36;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1592,171,0
chrVII	401617	.	G	T	486	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.47;MQ0=0;QD=16.20;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:54:519,54,0
chrVII	401621	.	T	G	402	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;QD=15.46;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:48:435,48,0
chrVII	401919	.	G	A	718	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=11.05;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:81:751,81,0
chrVII	402279	.	C	T	1306	filter	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=16;QD=15.73;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1339,147,0
chrVII	402360	.	G	C	1903	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=2;QD=18.48;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1936,210,0
chrVII	402421	.	T	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=1;QD=17.09;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1366,144,0
chrVII	402474	.	G	T	588	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=15.47;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:63:621,63,0
chrVII	402481	.	T	C	629	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=51;Dels=0.00;FS=16.335;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=0;MQRankSum=1.410;QD=12.33;ReadPosRankSum=1.652;SB=-6.547e-03	GT:AD:DP:GQ:PL	1/1:1,42:51:55:662,55,0
chrVII	402494	.	C	T	787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.335;DP=53;Dels=0.00;FS=79.933;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;MQRankSum=1.180;QD=14.85;ReadPosRankSum=3.665;SB=-4.007e+00	GT:AD:DP:GQ:PL	1/1:8,45:53:87:820,87,0
chrVII	402531	.	G	A	749	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=28.4958;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=17.83;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:81:782,81,0
chrVII	402537	.	C	T	516	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=28.4958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.12;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:60:549,60,0
chrVII	402539	.	A	T	534	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=28.4958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=2.063;QD=16.69;ReadPosRankSum=2.297;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:2,30:32:60:567,60,0
chrVII	402603	.	A	G	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.060;DP=64;Dels=0.00;FS=167.758;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.044;QD=0.39;ReadPosRankSum=-1.297;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:41,23:64:6:56,6,0
chrVII	402613	.	A	T	15.88	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.28;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,22:57:6:47,6,0
chrVII	402617	.	C	T	28.77	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.421;DP=56;Dels=0.00;FS=149.252;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.043;QD=0.51;ReadPosRankSum=-2.018;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:34,21:56:6:60,6,0
chrVII	402621	.	G	A	30.77	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.58;SB=-5.168e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:6:62,6,0
chrVII	402623	.	C	T	30.77	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.58;SB=-5.108e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:6:62,6,0
chrVII	402628	.	T	A	26.77	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.64;SB=-3.488e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:6:58,6,0
chrVII	402634	.	G	A	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.59;SB=-3.458e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:6:57,6,0
chrVII	402642	.	C	T	82.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=25.5618;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=1.35;SB=-4.415e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:12:115,12,0
chrVII	402643	.	G	A	77.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=28.83;MQ0=0;QD=1.27;SB=-4.585e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:12:110,12,0
chrVII	402648	.	A	T	13.22	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;DP=59;Dels=0.00;FS=135.325;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=28.82;MQ0=0;MQRankSum=0.107;QD=0.22;ReadPosRankSum=0.963;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:18,41:59:43:43,0,46
chrVII	402649	.	T	C	80.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=1.36;SB=-4.465e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:12:113,12,0
chrVII	402651	.	T	A	17.09	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;DP=62;Dels=0.00;FS=160.855;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=28.83;MQ0=0;MQRankSum=-0.767;QD=0.28;ReadPosRankSum=1.480;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:22,40:62:43:47,0,43
chrVII	402654	.	A	G	37.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;DP=67;Dels=0.00;FS=167.834;HaplotypeScore=1.3990;MLEAC=1;MLEAF=0.500;MQ=28.84;MQ0=0;MQRankSum=1.901;QD=0.55;ReadPosRankSum=-0.961;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:46,21:67:42:67,0,42
chrVII	402678	.	T	C	54.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;DP=53;Dels=0.00;FS=143.061;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=-0.193;QD=1.02;ReadPosRankSum=1.495;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:20,33:53:84:84,0,111
chrVII	402679	.	A	G	76.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;DP=53;Dels=0.00;FS=140.757;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=-1.196;QD=1.43;ReadPosRankSum=-0.825;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:34,19:53:88:106,0,88
chrVII	402684	.	C	A	78.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.110;DP=53;Dels=0.00;FS=143.061;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=0.578;QD=1.47;ReadPosRankSum=-2.009;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:33,20:53:99:108,0,103
chrVII	402690	.	C	T	73.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.811;DP=53;Dels=0.00;FS=146.651;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=-0.875;QD=1.38;ReadPosRankSum=-2.320;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:31,22:53:99:103,0,109
chrVII	402691	.	C	G	78.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;DP=49;Dels=0.00;FS=136.964;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=1.156;QD=1.59;ReadPosRankSum=3.427;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:22,27:49:75:108,0,75
chrVII	402692	.	A	G	84.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;DP=49;Dels=0.00;FS=123.346;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.59;MQ0=0;MQRankSum=1.613;QD=1.71;ReadPosRankSum=4.017;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:23,26:49:82:114,0,82
chrVII	402702	.	G	A	80.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;DP=45;Dels=0.00;FS=125.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.55;MQ0=0;MQRankSum=-2.204;QD=1.78;ReadPosRankSum=4.717;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:20,25:45:81:110,0,81
chrVII	402738	.	G	A	83.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.28;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:116,12,0
chrVII	402740	.	T	C	84.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.39;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:117,12,0
chrVII	402745	.	C	A	87.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.72;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:12:120,12,0
chrVII	402753	.	T	C	23.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.96;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:55,6,0
chrVII	402756	.	A	G	23.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.96;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:0,6:6:6:55,6,0
chrVII	402762	.	T	A	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.26;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:0,7:7:6:54,6,0
chrVII	402827	.	G	C	49.97	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.51;MQ0=0;QD=5.55;SB=-8.385e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:82,9,0
chrVII	402848	.	G	T	221.01	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;QD=13.00;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:27:254,27,0
chrVII	402859	.	A	T	341	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=16.24;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:39:374,39,0
chrVII	403516	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=2;QD=17.69;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1271,132,0
chrVII	403603	.	T	A	120.13	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=4;QD=6.67;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:18:153,18,0
chrVII	403607	.	A	G	79.51	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.11;MQ0=4;QD=5.30;SB=-5.655e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:12:112,12,0
chrVII	403664	.	A	G	52.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.90;MQ0=1;MQRankSum=-0.744;QD=3.53;ReadPosRankSum=1.488;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,14:15:9:85,9,0
chrVII	403666	.	G	A	54.97	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.19;MQ0=1;QD=3.93;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,14:14:9:87,9,0
chrVII	403685	.	T	C	51.97	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.48;MQ0=2;QD=2.36;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,22:22:9:84,9,0
chrVII	403686	.	C	T	51.97	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.48;MQ0=2;QD=2.36;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,22:22:9:84,9,0
chrVII	403700	.	T	C	249	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.80;MQ0=2;QD=8.03;SB=-1.492e-02	GT:AD:DP:GQ:PL	1/1:0,31:31:30:282,30,0
chrVII	403747	.	C	T	515	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=2;QD=13.21;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:60:548,60,0
chrVII	403770	.	T	C	643	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.26;MQ0=3;QD=16.92;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:676,72,0
chrVII	403794	.	G	T	829	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=6;QD=17.64;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:862,93,0
chrVII	403934	.	A	T	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,3:3:6:51,6,0
chrVII	403936	.	C	A	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=-0.727;QD=4.71;ReadPosRankSum=0.727;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:1,3:4:6:50,6,0
chrVII	403950	.	A	T	113.26	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=16.18;SB=-8.630e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:15:146,15,0
chrVII	404254	.	G	A	127.13	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.03;MQ0=8;QD=5.53;SB=-7.617e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:18:160,18,0
chrVII	404661	.	G	A	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.16;MQ0=2;QD=0.72;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:6:55,6,0
chrVII	405296	.	T	A	1032	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=6;MQRankSum=1.205;QD=19.11;ReadPosRankSum=1.657;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:6,47:53:99:1065,111,0
chrVII	405315	.	T	C	1160	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=12;QD=18.41;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:10,53:63:99:1193,129,0
chrVII	405349	.	G	T	752	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.53;MQ0=8;QD=17.49;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:6,37:43:84:785,84,0
chrVII	405422	.	C	A	784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;DP=41;Dels=0.00;FS=24.837;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=2.829;QD=19.12;ReadPosRankSum=1.577;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:3,38:41:90:817,90,0
chrVII	405432	.	C	T	776	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=19.90;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:809,84,0
chrVII	405433	.	T	A	680	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=17.44;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:713,81,0
chrVII	405691	.	A	G	2232	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.4575;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=22.32;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2265,249,0
chrVII	405802	.	A	G	2236	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=24.57;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2269,246,0
chrVII	406378	.	C	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.96;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1710,180,0
chrVII	406695	.	C	T	2838	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-1.559e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2871,303,0
chrVII	407307	.	A	G	1178	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.65;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1211,129,0
chrVII	407376	.	T	C	1553	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.66;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1586,177,0
chrVII	408003	.	C	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.09;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1603,165,0
chrVII	408708	.	G	A	1129	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.92;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1162,123,0
chrVII	408709	.	A	C	1157	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=18.08;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1190,129,0
chrVII	408716	.	C	G	1149	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=17.68;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1182,126,0
chrVII	408767	.	G	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.10;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1246,129,0
chrVII	408864	.	G	A	928	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.74;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:961,102,0
chrVII	408942	.	C	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.71;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1140,120,0
chrVII	409654	.	G	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.12;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1965,201,0
chrVII	409886	.	C	G	1177	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1210,132,0
chrVII	410080	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.46;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1769,186,0
chrVII	410159	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=16.08;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1078,114,0
chrVII	410219	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.13;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1315,141,0
chrVII	410294	.	A	G	821	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:854,93,0
chrVII	410420	.	C	T	1489	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.68;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1522,159,0
chrVII	410453	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.39;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1175,129,0
chrVII	410531	.	G	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.75;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1425,156,0
chrVII	411461	.	A	G	1898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.4984;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.211;QD=22.87;ReadPosRankSum=1.690;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1931,210,0
chrVII	411573	.	G	A	1875	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=16.0322;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.59;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,80:83:99:1908,201,0
chrVII	412277	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=57.0240;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=16.76;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:67:99:1156,123,0
chrVII	412400	.	C	T	651	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.15;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:72:684,72,0
chrVII	412413	.	A	T	775	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.87;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:808,84,0
chrVII	412477	.	C	T	1018	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.21;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1051,111,0
chrVII	412619	.	A	C	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=-0.417;QD=16.57;ReadPosRankSum=1.688;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1342,147,0
chrVII	412625	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=6.767;HaplotypeScore=61.7985;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.137;QD=16.67;ReadPosRankSum=1.687;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1333,150,0
chrVII	412672	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=14.6673;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=19.30;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1712,186,0
chrVII	412771	.	G	C	1816	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=23.58;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1849,207,0
chrVII	412810	.	A	G	1779	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.81;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1812,198,0
chrVII	412828	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=20.71;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1669,174,0
chrVII	412864	.	T	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.17;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1068,114,0
chrVII	412886	.	C	T	775	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=38.1156;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.50;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:84:808,84,0
chrVII	413016	.	T	C	1020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=5.082;HaplotypeScore=9.8532;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=1.075;QD=17.59;ReadPosRankSum=1.553;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1053,117,0
chrVII	413051	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=79;Dels=0.00;FS=9.768;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.140;QD=16.87;ReadPosRankSum=2.356;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1366,150,0
chrVII	413440	.	C	T	944	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.52;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:977,102,0
chrVII	413728	.	C	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=18.51;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1458,156,0
chrVII	413797	.	C	T	492	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=11.18;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:54:525,54,0
chrVII	414265	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1776,180,0
chrVII	414479	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.60;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1207,129,0
chrVII	414527	.	C	T	1292	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.00;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1325,138,0
chrVII	414653	.	G	A	2039	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.87;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2072,216,0
chrVII	414724	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.90;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1205,126,0
chrVII	414752	.	T	C	986	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=16.16;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1019,111,0
chrVII	414779	.	T	C	830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=55;Dels=0.00;FS=6.438;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.443;QD=15.09;ReadPosRankSum=2.359;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:2,52:55:96:863,96,0
chrVII	415307	.	G	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.72;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1640,171,0
chrVII	415484	.	G	A	2039	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2072,219,0
chrVII	415592	.	A	G	1944	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.60;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1977,219,0
chrVII	415922	.	T	C	2122	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=14.8551;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.22;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,95:99:99:2155,234,0
chrVII	416947	.	T	C	1180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-1.013;QD=22.26;ReadPosRankSum=1.602;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1213,132,0
chrVII	416956	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.87;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1346,141,0
chrVII	417308	.	A	G	1144	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5354;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=17.33;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1177,123,0
chrVII	417311	.	T	G	1000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.2573;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.750;QD=14.93;ReadPosRankSum=1.525;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1033,111,0
chrVII	417363	.	G	A	945	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.18;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:978,105,0
chrVII	417671	.	A	G	1590	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2904;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.04;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1623,174,0
chrVII	418202	.	C	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.16;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1850,192,0
chrVII	418253	.	G	A	1935	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.60;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1968,204,0
chrVII	418292	.	A	T	1916	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-0.020;QD=22.54;ReadPosRankSum=1.691;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1949,204,0
chrVII	418502	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.29;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1630,177,0
chrVII	419878	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.2423;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.09;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1589,171,0
chrVII	420483	.	G	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.35;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1539,168,0
chrVII	420882	.	C	T	1136	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.25;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1169,126,0
chrVII	420911	.	A	C	1525	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.10;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1558,171,0
chrVII	421296	.	A	T	2170	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.0161;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.23;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2203,228,0
chrVII	422386	.	C	T	883	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.07;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:916,96,0
chrVII	422434	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.21;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1089,123,0
chrVII	425446	.	A	C	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=75;Dels=0.00;FS=2.624;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.439;QD=17.36;ReadPosRankSum=2.850;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:3,71:75:99:1335,147,0
chrVII	427600	.	A	G	2010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=101;Dels=0.00;FS=3.054;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.529;QD=19.90;ReadPosRankSum=2.204;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:2,98:101:99:2043,225,0
chrVII	428152	.	A	G	74.51	PASS	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.90;SB=-2.655e+01	GT:AD:DP:GQ:PL	1/1:0,5:5:12:107,12,0
chrVII	428542	.	C	G	1051	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1084,117,0
chrVII	428698	.	A	T	741	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.45;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:81:774,81,0
chrVII	429467	.	A	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.09;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2090,216,0
chrVII	429706	.	A	C	3493.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=164;Dels=0.00;FS=4.287;HaplotypeScore=12.7476;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.377;QD=21.30;ReadPosRankSum=1.711;SB=-1.631e+03	GT:AD:DP:GQ:PL	1/1:1,160:164:99:3493,375,0
chrVII	429811	.	T	C	4297.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=10.7056;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.274;QD=23.48;ReadPosRankSum=1.713;SB=-1.937e+03	GT:AD:DP:GQ:PL	1/1:1,182:183:99:4297,462,0
chrVII	430559	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.13;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1390,153,0
chrVII	430765	.	C	T	2359	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.37;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2392,249,0
chrVII	430810	.	T	C	2731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.038;DP=119;Dels=0.00;FS=10.520;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.285;QD=22.95;ReadPosRankSum=4.111;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:6,113:119:99:2764,297,0
chrVII	431116	.	T	C	1809	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.10;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1842,201,0
chrVII	431464	.	T	A	389	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.112;QD=16.91;ReadPosRankSum=3.317;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:5,18:23:45:422,45,0
chrVII	431474	.	A	G	664	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.12;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:33:78:697,78,0
chrVII	431867	.	A	G	1059	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8697;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=15.13;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1092,117,0
chrVII	433234	.	A	G	414	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=10.35;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:51:447,51,0
chrVII	433556	.	C	T	559	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.63;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:63:592,63,0
chrVII	437056	.	C	T	1810	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.35;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1843,192,0
chrVII	438242	.	T	C	1846	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.575;QD=20.98;ReadPosRankSum=1.693;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1879,213,0
chrVII	440693	.	T	A	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=-0.676;QD=18.76;ReadPosRankSum=2.910;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1515,165,0
chrVII	440972	.	A	T	361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=16.3304;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.948;QD=2.39;ReadPosRankSum=2.167;SB=-1.709e+03	GT:AD:DP:GQ:PL	1/1:6,145:151:51:394,51,0
chrVII	440974	.	T	A	306.02	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.810;DP=147;Dels=0.00;FS=3.960;HaplotypeScore=11.7943;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=0.074;QD=2.08;ReadPosRankSum=3.110;SB=-1.578e+03	GT:AD:DP:GQ:PL	1/1:6,141:147:25:339,25,0
chrVII	441353	.	G	A	2025	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.32;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2058,225,0
chrVII	441493	.	T	G	1673	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=88;Dels=0.00;FS=2.742;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=2.135;QD=19.01;ReadPosRankSum=2.393;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:2,85:88:99:1706,186,0
chrVII	442184	.	A	G	593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=-0.755;QD=15.21;ReadPosRankSum=1.555;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:69:626,69,0
chrVII	442187	.	A	C	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.156;DP=34;Dels=0.00;FS=22.335;HaplotypeScore=2.7412;MLEAC=1;MLEAF=0.500;MQ=43.54;MQ0=0;MQRankSum=-1.569;QD=0.79;ReadPosRankSum=-1.606;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,10:34:57:57,0,400
chrVII	442199	.	A	C	233	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=9.32;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:30:266,30,0
chrVII	442202	.	A	C	43.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;DP=27;Dels=0.00;FS=1.796;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.35;MQ0=0;MQRankSum=-1.347;QD=1.59;ReadPosRankSum=-2.641;SB=-5.701e+01	GT:AD:DP:GQ:PL	0/1:18,9:27:73:73,0,167
chrVII	442208	.	A	G	297	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;MQRankSum=-0.299;QD=10.24;ReadPosRankSum=1.614;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:1,28:29:36:330,36,0
chrVII	442220	.	A	G	303	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=11.22;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:36:336,36,0
chrVII	442299	.	C	G	1604	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.56;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1637,180,0
chrVII	442339	.	A	G	1521	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9896;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.01;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1554,174,0
chrVII	442935	.	C	T	2463	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.19;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,118:122:99:2496,267,0
chrVII	442968	.	A	T	2681	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.53;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2714,288,0
chrVII	443007	.	G	A	2827	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.98;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2860,309,0
chrVII	443061	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=21.27;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2139,225,0
chrVII	443074	.	G	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.46;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1977,213,0
chrVII	443161	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1087,114,0
chrVII	443306	.	C	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.82;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1657,180,0
chrVII	443342	.	A	T	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;DP=79;Dels=0.00;FS=8.758;HaplotypeScore=68.5028;MLEAC=1;MLEAF=0.500;MQ=56.02;MQ0=0;MQRankSum=1.237;QD=0.14;ReadPosRankSum=-4.944;SB=-7.801e+01	GT:AD:DP:GQ:PL	0/1:58,21:79:41:41,0,618
chrVII	443581	.	T	C	1156	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=45.0689;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=16.51;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1189,132,0
chrVII	443972	.	G	A	2071	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.27;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2104,222,0
chrVII	444466	.	T	C	2624	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.24;SB=-1.574e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2657,288,0
chrVII	445603	.	T	A	1548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.850;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.817;QD=20.92;ReadPosRankSum=1.250;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1581,168,0
chrVII	446205	.	G	A	2371	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.1420;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.71;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2404,249,0
chrVII	448106	.	T	C	1863	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.47;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1896,207,0
chrVII	448929	.	A	G	1798	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=0;QD=15.24;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:1831,201,0
chrVII	449133	.	C	T	2008	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4376;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.07;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2041,216,0
chrVII	449184	.	T	G	1217	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.6134;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=17.90;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1250,141,0
chrVII	449525	.	C	T	1002	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=16.70;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1035,114,0
chrVII	449549	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=14.86;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:791,87,0
chrVII	449586	.	A	G	543	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=12.34;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:63:576,63,0
chrVII	449589	.	A	G	568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-1.479;QD=12.91;ReadPosRankSum=1.648;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:1,40:44:66:601,66,0
chrVII	449637	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.09;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1255,132,0
chrVII	449763	.	A	G	910	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=19.78;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:943,102,0
chrVII	449769	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.90;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1008,105,0
chrVII	449774	.	A	G	881	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=18.74;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:914,99,0
chrVII	449829	.	C	T	465	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=14.53;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:57:498,57,0
chrVII	449895	.	G	A	338	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=10.90;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:39:371,39,0
chrVII	450342	.	C	A	718	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.89;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:751,87,0
chrVII	450353	.	G	T	537	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=15.79;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:63:570,63,0
chrVII	450372	.	C	G	487	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=15.71;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:520,57,0
chrVII	450770	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=21.79;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1362,147,0
chrVII	450890	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9422;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.14;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1027,111,0
chrVII	450908	.	G	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.88;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1128,126,0
chrVII	451307	.	A	G	1060	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=53;Dels=0.00;FS=8.003;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.119;QD=20.00;ReadPosRankSum=2.355;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:2,50:53:99:1093,120,0
chrVII	451708	.	G	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1585,174,0
chrVII	451905	.	G	A	1593	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=19.91;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1626,177,0
chrVII	451921	.	T	C	1528	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.19;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1561,168,0
chrVII	451937	.	C	T	1421	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=18.22;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1454,150,0
chrVII	451955	.	G	T	1286	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.15;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1319,141,0
chrVII	452296	.	A	C	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.435;QD=21.32;ReadPosRankSum=0.940;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1547,168,0
chrVII	452571	.	A	G	1416	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.2906;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.40;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1449,156,0
chrVII	452796	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.28;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1537,162,0
chrVII	453554	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.48;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1202,129,0
chrVII	454664	.	C	A	1444	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.92;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1477,162,0
chrVII	454799	.	T	C	2419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.487;QD=24.19;ReadPosRankSum=1.522;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2452,267,0
chrVII	454822	.	C	T	2211	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.33;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2244,249,0
chrVII	454850	.	A	C	1439	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.16;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1472,162,0
chrVII	455013	.	G	A	1349	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5432;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.48;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1382,147,0
chrVII	455497	.	C	T	1284	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.40;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1317,138,0
chrVII	455625	.	A	G	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.238;QD=20.51;ReadPosRankSum=1.664;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1079,114,0
chrVII	455699	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.13;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2106,222,0
chrVII	455815	.	T	C	2384	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.9234;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.84;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2417,264,0
chrVII	456180	.	T	C	2228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=4.685;HaplotypeScore=4.7163;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.109;QD=22.28;ReadPosRankSum=1.663;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2261,246,0
chrVII	456426	.	C	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.80;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1948,204,0
chrVII	456674	.	C	T	3274.01	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.8320;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.55;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,137:139:99:3274,345,0
chrVII	456812	.	G	A	2887	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=26.73;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2920,300,0
chrVII	457022	.	G	A	2874	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3629;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.28;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2907,309,0
chrVII	457145	.	G	A	4983.01	PASS	AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.29;SB=-1.722e+03	GT:AD:DP:GQ:PL	1/1:0,213:214:99:4983,534,0
chrVII	457220	.	C	T	3448.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.63;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3448,360,0
chrVII	457592	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.331;QD=18.26;ReadPosRankSum=2.397;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:2,91:94:99:1749,195,0
chrVII	457631	.	T	C	2075	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.39;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2108,225,0
chrVII	457688	.	C	G	2040	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.67;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2073,219,0
chrVII	457721	.	G	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1609,168,0
chrVII	458281	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.15;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1141,120,0
chrVII	458368	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0019;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.62;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2013,219,0
chrVII	458995	.	C	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=12.7018;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=17.27;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1691,180,0
chrVII	459164	.	C	T	2225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.990;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9759;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.095;QD=24.18;ReadPosRankSum=1.475;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2258,220,0
chrVII	459352	.	G	A	2566	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.29;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2599,273,0
chrVII	459355	.	A	G	2471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.693;QD=18.72;ReadPosRankSum=1.705;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:1,129:132:99:2504,270,0
chrVII	459382	.	T	G	2485	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.72;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2518,276,0
chrVII	459691	.	G	C	1927	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.6855;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.35;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1960,213,0
chrVII	459753	.	G	T	347	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.03;FS=0.000;HaplotypeScore=133.1783;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=2.13;SB=-1.740e+03	GT:AD:DP:GQ:PL	1/1:0,158:158:42:380,42,0
chrVII	459766	.	C	T	781	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=5.24;SB=-1.765e+03	GT:AD:DP:GQ:PL	1/1:1,148:149:90:814,90,0
chrVII	459767	.	T	C	814	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=0.407;QD=5.43;ReadPosRankSum=1.709;SB=-1.653e+03	GT:AD:DP:GQ:PL	1/1:2,148:150:96:847,96,0
chrVII	459867	.	T	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.18;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1452,162,0
chrVII	460066	.	T	C	2289	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.89;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2322,246,0
chrVII	460296	.	T	A	1185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=59;Dels=0.00;FS=3.655;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.717;QD=20.08;ReadPosRankSum=1.673;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1218,126,0
chrVII	460330	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.74;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1410,156,0
chrVII	460447	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.51;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1597,165,0
chrVII	460477	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.27;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1057,117,0
chrVII	460726	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.18;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1587,171,0
chrVII	460786	.	A	G	2129	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5752;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.66;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2162,237,0
chrVII	460823	.	C	A	2137	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.56;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2170,225,0
chrVII	460947	.	A	G	1625	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1658,180,0
chrVII	461071	.	T	C	1714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.313;QD=20.40;ReadPosRankSum=1.607;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1747,192,0
chrVII	461146	.	A	G	1765	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.85;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1798,195,0
chrVII	461612	.	T	C	1981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.041;QD=23.58;ReadPosRankSum=1.691;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:2014,222,0
chrVII	461695	.	T	C	2063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.518;QD=23.44;ReadPosRankSum=2.170;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:2096,231,0
chrVII	461875	.	G	A	1959	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.80;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1992,204,0
chrVII	462190	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.35;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1519,168,0
chrVII	462196	.	G	A	1422	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.77;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1455,150,0
chrVII	463027	.	G	A	1792	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.08;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1825,195,0
chrVII	463348	.	A	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.70;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1486,162,0
chrVII	463372	.	C	A	1374	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.69;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1407,153,0
chrVII	463981	.	A	G	2352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.340;QD=21.98;ReadPosRankSum=1.667;SB=-1.368e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2385,258,0
chrVII	464215	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9217;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.83;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1103,120,0
chrVII	464366	.	C	T	2603	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.66;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2636,270,0
chrVII	464965	.	T	C	983	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=14.89;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1016,111,0
chrVII	464972	.	T	C	1064	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=16.37;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1097,120,0
chrVII	465091	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.6948;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=1.766;QD=20.69;ReadPosRankSum=2.298;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1378,153,0
chrVII	465118	.	T	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.8248;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.12;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1200,135,0
chrVII	465214	.	G	C	1232	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.69;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1265,138,0
chrVII	465447	.	T	A	1309	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0904;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.45;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1342,138,0
chrVII	465488	.	G	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.50;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1140,120,0
chrVII	465503	.	A	T	884	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.04;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:917,99,0
chrVII	465534	.	T	C	703	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=17.15;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:736,81,0
chrVII	465790	.	C	T	1085	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.37;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1118,117,0
chrVII	465905	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.58;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1729,186,0
chrVII	466029	.	A	T	2192	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.37;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2225,234,0
chrVII	466092	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=81;Dels=0.00;FS=6.180;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.886;QD=21.98;ReadPosRankSum=2.887;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:3,77:81:99:1813,198,0
chrVII	466305	.	C	T	1772	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.15;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1805,189,0
chrVII	466371	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.15;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1965,207,0
chrVII	466404	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.45;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1685,183,0
chrVII	466974	.	C	T	1953	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.00;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1986,204,0
chrVII	467277	.	A	T	2302	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.23;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2335,243,0
chrVII	467379	.	G	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.35;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1506,156,0
chrVII	467387	.	T	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.38;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1196,135,0
chrVII	467451	.	C	T	448	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=12.80;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:54:481,54,0
chrVII	467473	.	A	G	711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.604;QD=16.53;ReadPosRankSum=1.652;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:81:744,81,0
chrVII	467730	.	C	T	53.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.153;DP=32;Dels=0.00;FS=30.507;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-2.563;QD=1.69;ReadPosRankSum=2.858;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:27,4:32:9:86,9,0
chrVII	468710	.	A	G	1816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=83;Dels=0.00;FS=5.105;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.476;QD=21.88;ReadPosRankSum=1.647;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,80:83:99:1849,201,0
chrVII	469047	.	A	G	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=3.203;HaplotypeScore=60.1296;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.632;QD=0.17;ReadPosRankSum=0.577;SB=-8.578e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:6:43,6,0
chrVII	470028	.	A	G	1973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.663;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.460;QD=24.97;ReadPosRankSum=1.688;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:2006,219,0
chrVII	470055	.	C	T	1753	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.37;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1786,189,0
chrVII	470499	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.7303;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.66;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1370,141,0
chrVII	470529	.	G	A	1156	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=18.06;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1189,123,0
chrVII	471171	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.00;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1309,144,0
chrVII	471870	.	G	A	1085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=58;Dels=0.00;FS=4.058;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.124;QD=18.71;ReadPosRankSum=0.495;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,55:58:99:1118,117,0
chrVII	472019	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-1.095;QD=19.37;ReadPosRankSum=2.381;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1408,156,0
chrVII	472038	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.23;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1552,168,0
chrVII	472176	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.6759;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.09;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1535,168,0
chrVII	472215	.	A	G	1756	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.39;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1789,195,0
chrVII	472372	.	C	A	2083	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.14;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2116,240,0
chrVII	472609	.	A	G	1738	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.94;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1771,192,0
chrVII	472821	.	G	C	2285	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.80;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2318,252,0
chrVII	473079	.	G	A	1843	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.25;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1876,198,0
chrVII	473502	.	T	C	2119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.148;QD=23.54;ReadPosRankSum=1.654;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:2152,228,0
chrVII	473949	.	A	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=17.00;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1614,171,0
chrVII	473951	.	G	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=15.98;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1551,159,0
chrVII	474296	.	A	G	4454.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=194;Dels=0.00;FS=3.877;HaplotypeScore=4.1575;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.732;QD=22.96;ReadPosRankSum=1.695;SB=-2.155e+03	GT:AD:DP:GQ:PL	1/1:1,187:194:99:4454,489,0
chrVII	474400	.	C	T	3899.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.77;SB=-1.860e+03	GT:AD:DP:GQ:PL	1/1:0,164:164:99:3899,409,0
chrVII	474600	.	G	A	3068	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.45;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:3101,327,0
chrVII	474708	.	T	C	2331	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.588;QD=21.39;ReadPosRankSum=1.700;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2364,258,0
chrVII	474714	.	G	A	2448	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.47;SB=-1.424e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2481,270,0
chrVII	474798	.	C	T	2390	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.20;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2423,261,0
chrVII	474965	.	G	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.37;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1907,198,0
chrVII	475074	.	C	T	2432	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.32;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2465,258,0
chrVII	475388	.	T	C	1407	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=77;Dels=0.00;FS=6.175;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;MQRankSum=-0.355;QD=18.27;ReadPosRankSum=2.830;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1440,159,0
chrVII	475390	.	A	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.25;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1496,156,0
chrVII	475414	.	A	G	1682	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.09;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1715,192,0
chrVII	475766	.	G	A	2222	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.89;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,90:93:99:2255,231,0
chrVII	475858	.	C	T	2266	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.85;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2299,240,0
chrVII	476186	.	A	G	3493.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.0534;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.98;SB=-1.939e+03	GT:AD:DP:GQ:PL	1/1:0,151:152:99:3493,375,0
chrVII	476814	.	C	T	1127	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.77;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1160,123,0
chrVII	476820	.	A	G	1016	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.81;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1049,114,0
chrVII	477177	.	C	G	1138	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.2428;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=18.35;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1171,129,0
chrVII	477384	.	T	C	1299	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.95;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1332,147,0
chrVII	478308	.	A	T	1685	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.77;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1718,180,0
chrVII	478509	.	G	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.64;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1412,147,0
chrVII	478846	.	C	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1272,132,0
chrVII	479589	.	C	T	892	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.87;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:925,96,0
chrVII	480612	.	A	G	1284	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.23;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1317,141,0
chrVII	481299	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=17.62;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1601,168,0
chrVII	481302	.	G	T	1505	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.10;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1538,162,0
chrVII	481776	.	T	C	1805	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.75;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1838,201,0
chrVII	482042	.	C	T	1413	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.36;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1446,156,0
chrVII	482421	.	A	G	2090	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.77;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2123,234,0
chrVII	482446	.	G	A	2216	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.16;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2249,246,0
chrVII	482679	.	T	C	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3999;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.622;QD=18.07;ReadPosRankSum=1.622;SB=-2.380e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1732,175,0
chrVII	482923	.	G	A	2110	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=26.37;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2143,222,0
chrVII	482953	.	C	G	1870	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.27;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1903,201,0
chrVII	482980	.	T	C	1451	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.18;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1484,162,0
chrVII	483277	.	A	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1218,129,0
chrVII	483370	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=4.942;HaplotypeScore=8.1444;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.711;QD=22.53;ReadPosRankSum=1.643;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1790,195,0
chrVII	483704	.	C	T	1546	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.61;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1579,162,0
chrVII	484725	.	G	A	1326	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.86;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1359,153,0
chrVII	484843	.	C	T	2154	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.21;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2187,231,0
chrVII	484951	.	A	G	1662	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.02;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1695,186,0
chrVII	485217	.	A	T	1060	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=18.60;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1093,114,0
chrVII	485223	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=19.55;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1128,120,0
chrVII	485256	.	A	G	871	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.26;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:904,99,0
chrVII	485424	.	T	C	748	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:87:781,87,0
chrVII	485796	.	T	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.36;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1105,123,0
chrVII	486003	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=44;Dels=0.00;FS=3.547;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.007;QD=22.50;ReadPosRankSum=1.571;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,42:44:99:1023,108,0
chrVII	486391	.	G	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.71;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1058,114,0
chrVII	486595	.	C	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.48;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1292,138,0
chrVII	486820	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.5053;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.02;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1646,171,0
chrVII	487057	.	C	T	2001	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.33;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2034,213,0
chrVII	487114	.	G	A	2328	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.25;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2361,252,0
chrVII	487204	.	G	C	2146	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2179,240,0
chrVII	487305	.	C	T	999	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.98;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1032,108,0
chrVII	487329	.	G	A	876	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.88;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:909,96,0
chrVII	487652	.	T	C	955	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=25.13;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:988,105,0
chrVII	487937	.	G	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.04;FS=0.000;HaplotypeScore=11.9838;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.92;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1567,162,0
chrVII	489115	.	C	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.47;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1384,144,0
chrVII	489423	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.586;QD=20.72;ReadPosRankSum=1.683;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1504,159,0
chrVII	489481	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.17;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1811,195,0
chrVII	489693	.	T	A	2113	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.29;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2146,234,0
chrVII	489734	.	T	C	1825	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.26;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1858,204,0
chrVII	489810	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.80;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1580,171,0
chrVII	489944	.	A	G	2326	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.03;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2359,252,0
chrVII	490077	.	C	T	2044	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.24;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2077,222,0
chrVII	490117	.	C	T	2545	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.01;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2578,270,0
chrVII	490298	.	C	T	2667	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.03;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2700,282,0
chrVII	490467	.	G	A	2248	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.7147;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.62;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2281,237,0
chrVII	490539	.	C	G	2098	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=16.78;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2131,231,0
chrVII	490647	.	G	A	2141	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.79;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2174,228,0
chrVII	490786	.	C	G	1186	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.83;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1219,132,0
chrVII	490997	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.48;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1365,147,0
chrVII	491066	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.04;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1485,162,0
chrVII	491171	.	A	G	829	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.606;QD=20.72;ReadPosRankSum=1.646;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:90:862,90,0
chrVII	491249	.	G	C	1338	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.24;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:63:99:1371,147,0
chrVII	491259	.	A	T	1356	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=25.11;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1389,144,0
chrVII	491350	.	G	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1567,165,0
chrVII	491698	.	C	A	2393	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.75;SB=-1.324e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2426,252,0
chrVII	491950	.	T	C	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.310;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.547;QD=21.68;ReadPosRankSum=1.640;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1659,180,0
chrVII	492059	.	C	A	2306	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.61;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2339,243,0
chrVII	492175	.	G	A	2564	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.89;SB=-1.439e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2597,270,0
chrVII	492371	.	A	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;QD=21.61;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1632,177,0
chrVII	492468	.	C	T	2801	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.8828;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.41;SB=-1.678e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2834,297,0
chrVII	492816	.	T	C	2496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.965;QD=20.29;ReadPosRankSum=1.704;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:1,121:123:99:2529,267,0
chrVII	492864	.	A	G	1989	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=7.268;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.170;QD=21.16;ReadPosRankSum=2.397;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:2,92:94:99:2022,213,0
chrVII	493704	.	A	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.30;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1304,138,0
chrVII	493751	.	C	T	1631	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.97;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1664,174,0
chrVII	493848	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.59;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1824,189,0
chrVII	493944	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.12;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1711,180,0
chrVII	493949	.	C	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.4876;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=16.00;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1649,168,0
chrVII	494624	.	A	G	646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=38;Dels=0.00;FS=3.757;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.730;QD=17.00;ReadPosRankSum=1.550;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:75:679,75,0
chrVII	494636	.	C	T	810	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.76;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:843,87,0
chrVII	494870	.	C	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.58;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1589,171,0
chrVII	494918	.	G	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.81;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1219,132,0
chrVII	495047	.	A	C	2661	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.97;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2694,288,0
chrVII	496647	.	C	T	718	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.41;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:78:751,78,0
chrVII	496768	.	C	G	275	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=16.18;SB=-1.060e-02	GT:AD:DP:GQ:PL	1/1:0,16:17:33:308,33,0
chrVII	496875	.	A	G	520	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=14.86;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:60:553,60,0
chrVII	496881	.	A	G	472	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=20.8619;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=17.48;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:54:505,54,0
chrVII	496909	.	T	C	437	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=19.00;SB=-6.587e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:51:470,51,0
chrVII	496948	.	A	T	190.03	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=4.9789;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=17.28;SB=-3.661e-02	GT:AD:DP:GQ:PL	1/1:0,11:11:24:223,24,0
chrVII	496982	.	T	C	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.63;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,6:6:6:53,6,0
chrVII	496988	.	C	T	79.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.36;SB=-5.926e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:12:112,12,0
chrVII	496991	.	C	A	80.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.50;SB=-5.626e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:12:113,12,0
chrVII	497005	.	A	G	154.06	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.06;SB=-2.707e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:21:187,21,0
chrVII	497008	.	G	T	194.03	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.78;SB=-2.504e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:24:227,24,0
chrVII	497020	.	A	T	283	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.86;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:33:316,33,0
chrVII	497029	.	A	G	293	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.74;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:36:326,36,0
chrVII	497046	.	A	T	313	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.04;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:36:346,36,0
chrVII	497050	.	G	A	333	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=11.10;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,29:30:39:366,39,0
chrVII	497059	.	T	C	390	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;QD=10.26;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:48:423,48,0
chrVII	497405	.	G	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.55;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2067,216,0
chrVII	497413	.	A	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=92.9331;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=18.50;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1939,210,0
chrVII	497763	.	G	A	2177	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=21.14;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2210,243,0
chrVII	497968	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.910;DP=79;Dels=0.00;FS=10.653;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.961;QD=21.20;ReadPosRankSum=2.910;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:3,75:79:99:1708,186,0
chrVII	498201	.	G	C	2052	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.15;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2085,231,0
chrVII	498425	.	T	G	1482	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.16;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1515,165,0
chrVII	498521	.	T	C	1523	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=20.86;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1556,165,0
chrVII	498665	.	C	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.14;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1450,153,0
chrVII	499429	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=54;Dels=0.00;FS=8.605;HaplotypeScore=5.5385;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.210;QD=22.07;ReadPosRankSum=2.264;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:2,51:54:99:1225,132,0
chrVII	499455	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.32;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1305,141,0
chrVII	499647	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.632;QD=20.55;ReadPosRankSum=1.622;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:1,62:66:99:1389,147,0
chrVII	499817	.	C	T	1279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.173;QD=20.63;ReadPosRankSum=0.838;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1312,141,0
chrVII	499980	.	T	C	1553	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.5665;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.57;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1586,177,0
chrVII	500059	.	T	G	1729	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.561;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.907;QD=20.58;ReadPosRankSum=1.691;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1762,189,0
chrVII	500187	.	A	G	1470	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.79;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1503,159,0
chrVII	500228	.	A	G	1583	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.35;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1616,177,0
chrVII	500260	.	C	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.65;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1800,186,0
chrVII	500434	.	A	G	2111	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.7766;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.73;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2144,240,0
chrVII	500440	.	G	T	1861	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.59;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1894,204,0
chrVII	500444	.	C	G	1659	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=17.46;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1692,180,0
chrVII	500467	.	G	A	1511	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.43;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1544,162,0
chrVII	500745	.	G	C	2101	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.09;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2134,225,0
chrVII	500877	.	A	T	2255	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.27;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2288,240,0
chrVII	501009	.	G	A	2796	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.19;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2829,291,0
chrVII	501547	.	A	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.65;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1596,171,0
chrVII	501606	.	T	C	1966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.772;QD=23.69;ReadPosRankSum=1.690;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1999,219,0
chrVII	501886	.	T	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.51;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1360,147,0
chrVII	502135	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6579;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.77;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1496,168,0
chrVII	502282	.	G	T	1481	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.29;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1514,168,0
chrVII	502321	.	C	T	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DP=78;Dels=0.00;FS=4.094;HaplotypeScore=6.9275;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=1.642;QD=21.87;ReadPosRankSum=1.462;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1739,177,0
chrVII	502398	.	T	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.32;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1557,174,0
chrVII	502491	.	G	A	1982	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.2780;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.06;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2015,213,0
chrVII	502807	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=17.86;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1265,132,0
chrVII	502964	.	A	G	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=78;Dels=0.00;FS=3.951;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.022;QD=21.01;ReadPosRankSum=1.687;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1672,180,0
chrVII	502974	.	T	C	1396	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.94;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1429,153,0
chrVII	503498	.	T	C	1894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=6.553;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.400;QD=18.21;ReadPosRankSum=1.666;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1927,213,0
chrVII	503654	.	A	G	2005	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.25;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,96:99:99:2038,222,0
chrVII	503685	.	T	C	1793	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.60;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1826,195,0
chrVII	503816	.	A	G	1325	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.70;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1358,144,0
chrVII	504168	.	G	C	1788	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.29;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1821,195,0
chrVII	504342	.	T	A	2504	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1122;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2537,264,0
chrVII	504554	.	G	T	4056.01	PASS	AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.81;SB=-1.479e+03	GT:AD:DP:GQ:PL	1/1:0,186:186:99:4056,441,0
chrVII	504753	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.55;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1348,144,0
chrVII	505867	.	A	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1712,183,0
chrVII	506019	.	C	T	2082	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2115,231,0
chrVII	507086	.	A	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.86;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1243,138,0
chrVII	507124	.	G	A	1935	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.81;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1968,204,0
chrVII	507154	.	T	C	2198	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.14;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2231,243,0
chrVII	507287	.	A	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8074;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.42;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1468,153,0
chrVII	507742	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.2589;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.90;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1245,138,0
chrVII	508075	.	A	G	2056	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=6.756;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.331;QD=22.11;ReadPosRankSum=2.370;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2089,225,0
chrVII	508084	.	A	G	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.116;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.372;QD=20.01;ReadPosRankSum=0.885;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:2,94:97:99:1974,222,0
chrVII	508201	.	T	C	769	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=20.24;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:90:802,90,0
chrVII	508206	.	A	G	656	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;QD=17.73;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:0,35:37:78:689,78,0
chrVII	508419	.	T	C	1223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=82;Dels=0.00;FS=6.351;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.845;QD=14.91;ReadPosRankSum=1.648;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1256,118,0
chrVII	508460	.	G	A	1852	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.3813;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.16;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1885,204,0
chrVII	508488	.	A	G	2175	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.53;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2208,237,0
chrVII	508787	.	T	G	1350	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.00;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1383,156,0
chrVII	509101	.	A	G	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.920;QD=21.37;ReadPosRankSum=1.689;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1764,195,0
chrVII	509895	.	T	G	1145	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=16.84;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1178,132,0
chrVII	509926	.	T	A	1009	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.69;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1042,111,0
chrVII	510416	.	A	G	1212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.192;QD=19.24;ReadPosRankSum=1.677;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1245,138,0
chrVII	510553	.	A	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.72;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1306,141,0
chrVII	511938	.	G	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.19;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1219,135,0
chrVII	512135	.	T	C	1949	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.66;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1982,213,0
chrVII	512279	.	A	G	1949	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.93;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1982,219,0
chrVII	512350	.	A	T	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=4.569;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.292;QD=22.25;ReadPosRankSum=1.512;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1435,150,0
chrVII	513154	.	C	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5276;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.43;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1558,174,0
chrVII	513253	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.66;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1526,165,0
chrVII	513264	.	C	T	1697	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.07;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1730,180,0
chrVII	513303	.	G	A	1763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.913;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.987;QD=18.96;ReadPosRankSum=0.205;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1796,172,0
chrVII	513842	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1331,138,0
chrVII	514313	.	G	A	2898	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.4508;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.12;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,142:144:99:2931,318,0
chrVII	514414	.	T	C	2476	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.04;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2509,270,0
chrVII	514497	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.64;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1115,117,0
chrVII	514511	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.57;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1073,114,0
chrVII	514736	.	C	G	2374	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.73;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2407,261,0
chrVII	514934	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.16;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1525,162,0
chrVII	515594	.	G	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.87;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1498,156,0
chrVII	516638	.	C	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1904,195,0
chrVII	516867	.	G	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.96;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1640,180,0
chrVII	517686	.	G	A	414.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.721;DP=95;Dels=0.00;FS=17.478;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=0;MQRankSum=-2.156;QD=4.36;ReadPosRankSum=-4.522;SB=-1.420e+02	GT:AD:DP:GQ:PL	0/1:58,37:95:99:444,0,548
chrVII	517689	.	G	A	362.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.955;DP=94;Dels=0.00;FS=17.680;HaplotypeScore=2.3113;MLEAC=1;MLEAF=0.500;MQ=45.21;MQ0=0;MQRankSum=-2.405;QD=3.85;ReadPosRankSum=-4.356;SB=-1.260e+02	GT:AD:DP:GQ:PL	0/1:60,33:94:99:392,0,552
chrVII	517695	.	C	T	280.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;DP=92;Dels=0.00;FS=11.580;HaplotypeScore=3.8340;MLEAC=1;MLEAF=0.500;MQ=45.50;MQ0=0;MQRankSum=-3.840;QD=3.04;ReadPosRankSum=-3.806;SB=-1.110e+02	GT:AD:DP:GQ:PL	0/1:64,28:92:99:310,0,663
chrVII	517701	.	C	T	158.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;DP=83;Dels=0.00;FS=6.655;HaplotypeScore=2.3001;MLEAC=1;MLEAF=0.500;MQ=48.34;MQ0=0;MQRankSum=-4.003;QD=1.90;ReadPosRankSum=-5.416;SB=-7.501e+01	GT:AD:DP:GQ:PL	0/1:61,22:83:99:188,0,791
chrVII	517702	.	C	T	149.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;DP=83;Dels=0.00;FS=8.891;HaplotypeScore=1.5661;MLEAC=1;MLEAF=0.500;MQ=48.34;MQ0=0;MQRankSum=-4.685;QD=1.80;ReadPosRankSum=-5.301;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:62,21:83:99:179,0,785
chrVII	519278	.	G	A	1151	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.4470;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.93;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1184,126,0
chrVII	519381	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.79;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1197,123,0
chrVII	520131	.	C	A	2004	SnpCluster	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=20.45;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2037,216,0
chrVII	520140	.	A	G	1807	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=91;Dels=0.00;FS=2.936;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.651;QD=19.86;ReadPosRankSum=2.367;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:2,87:91:99:1840,201,0
chrVII	520141	.	G	C	1806	SnpCluster	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=20.29;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1839,198,0
chrVII	521004	.	T	C	2588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.031;QD=23.53;ReadPosRankSum=1.701;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2621,288,0
chrVII	521128	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.5133;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.66;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1350,141,0
chrVII	521292	.	C	T	2008	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.14;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2041,213,0
chrVII	521696	.	G	A	2980	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.41;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3013,327,0
chrVII	522036	.	A	C	1988	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=19.30;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2021,219,0
chrVII	522062	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.18;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1560,162,0
chrVII	522067	.	G	C	1437	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.11;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1470,162,0
chrVII	522131	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.66;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1638,168,0
chrVII	522689	.	G	A	1240	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.24;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1273,138,0
chrVII	522692	.	C	T	1327	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.40;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1360,147,0
chrVII	522892	.	C	T	2505	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.37;SB=-1.413e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2538,267,0
chrVII	522948	.	T	G	1547	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.10;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1580,171,0
chrVII	522987	.	T	G	954	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=19.87;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:987,108,0
chrVII	522988	.	T	C	932	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=20.26;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:965,105,0
chrVII	523005	.	T	C	909	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=18.94;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:942,102,0
chrVII	523077	.	G	A	843	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=20.07;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:876,90,0
chrVII	523089	.	A	T	892	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=20.74;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:925,96,0
chrVII	523104	.	C	G	1047	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=20.13;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1080,117,0
chrVII	523190	.	G	T	2214	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.33;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2247,234,0
chrVII	523348	.	C	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=18.75;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1158,123,0
chrVII	523370	.	G	C	781	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=15.02;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:87:814,87,0
chrVII	523385	.	C	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=16.52;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1140,117,0
chrVII	523412	.	A	G	872	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=14.78;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:905,99,0
chrVII	523415	.	G	T	855	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=16.13;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:888,93,0
chrVII	523417	.	C	T	838	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=14.96;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:90:871,90,0
chrVII	523617	.	T	G	2061	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.25;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2094,225,0
chrVII	523732	.	A	G	1175	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=44.2815;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=-0.742;QD=20.98;ReadPosRankSum=1.609;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1208,132,0
chrVII	523764	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=20.66;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1252,132,0
chrVII	524176	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=11.3288;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.87;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1285,141,0
chrVII	524215	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.02;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1409,150,0
chrVII	524258	.	G	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.67;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1583,168,0
chrVII	524356	.	C	T	1896	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6846;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.57;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1929,201,0
chrVII	524803	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.8622;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.71;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1334,147,0
chrVII	524944	.	T	C	942	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.62;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:975,108,0
chrVII	525205	.	C	T	2326	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.48;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2359,255,0
chrVII	525390	.	T	C	1839	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.70;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1872,204,0
chrVII	525897	.	C	T	1326	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=16.78;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1359,141,0
chrVII	525947	.	A	G	1697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.990;QD=20.20;ReadPosRankSum=1.691;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1730,192,0
chrVII	526005	.	A	G	2042	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.69;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2075,225,0
chrVII	526684	.	T	C	2114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=98;Dels=0.00;FS=13.284;HaplotypeScore=2.5929;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.639;QD=21.57;ReadPosRankSum=2.928;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:3,95:98:99:2147,228,0
chrVII	526833	.	T	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=21.3520;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=14.01;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1322,150,0
chrVII	527159	.	A	G	2144	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.23;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2177,237,0
chrVII	528498	.	C	G	2653	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.68;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,141:142:99:2686,291,0
chrVII	529347	.	A	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.41;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1645,171,0
chrVII	529383	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.493;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.182;QD=19.64;ReadPosRankSum=1.687;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1526,168,0
chrVII	529504	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.17;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1605,168,0
chrVII	529563	.	C	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.1387;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=19.56;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1950,207,0
chrVII	529630	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=14.31;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:1722,189,0
chrVII	529644	.	A	T	1842	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=14.74;SB=-1.532e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:1875,198,0
chrVII	529812	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.162;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.836;QD=19.59;ReadPosRankSum=-0.509;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1718,160,0
chrVII	530016	.	A	C	277.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.291;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=111.0284;MLEAC=1;MLEAF=0.500;MQ=39.55;MQ0=0;MQRankSum=-7.677;QD=1.26;ReadPosRankSum=-0.425;SB=-1.229e+03	GT:AD:DP:GQ:PL	0/1:98,122:220:99:307,0,1029
chrVII	530018	.	C	T	24.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DP=218;Dels=0.00;FS=11.721;HaplotypeScore=110.8506;MLEAC=1;MLEAF=0.500;MQ=39.92;MQ0=0;MQRankSum=-6.439;QD=0.11;ReadPosRankSum=0.671;SB=-5.870e+02	GT:AD:DP:GQ:PL	0/1:140,78:218:54:54,0,1206
chrVII	530034	.	A	C	1065.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.098;DP=230;Dels=0.00;FS=13.926;HaplotypeScore=24.8171;MLEAC=1;MLEAF=0.500;MQ=39.73;MQ0=0;MQRankSum=0.810;QD=4.63;ReadPosRankSum=-2.863;SB=-1.721e+03	GT:AD:DP:GQ:PL	0/1:53,176:229:99:1095,0,113
chrVII	530040	.	A	C	944.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.038;DP=224;Dels=0.00;FS=16.002;HaplotypeScore=23.9469;MLEAC=1;MLEAF=0.500;MQ=39.31;MQ0=0;MQRankSum=0.389;QD=4.21;ReadPosRankSum=-2.239;SB=-1.693e+03	GT:AD:DP:GQ:PL	0/1:51,173:224:99:974,0,131
chrVII	530065	.	C	T	58.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.752;DP=158;Dels=0.00;FS=18.210;HaplotypeScore=37.5797;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=0;MQRankSum=-3.505;QD=0.37;ReadPosRankSum=-1.780;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:137,19:158:88:88,0,857
chrVII	530067	.	C	A	50.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;DP=160;Dels=0.00;FS=10.067;HaplotypeScore=38.5596;MLEAC=1;MLEAF=0.500;MQ=44.33;MQ0=0;MQRankSum=-3.131;QD=0.31;ReadPosRankSum=-3.058;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:138,22:160:80:80,0,904
chrVII	530071	.	A	T	49.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DP=157;Dels=0.00;FS=21.603;HaplotypeScore=27.4362;MLEAC=1;MLEAF=0.500;MQ=45.16;MQ0=0;MQRankSum=-4.757;QD=0.31;ReadPosRankSum=-4.656;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:130,24:157:79:79,0,996
chrVII	530076	.	T	C	42.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;DP=156;Dels=0.00;FS=26.338;HaplotypeScore=10.8393;MLEAC=1;MLEAF=0.500;MQ=46.21;MQ0=0;MQRankSum=-5.228;QD=0.27;ReadPosRankSum=-5.347;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:133,22:156:72:72,0,1085
chrVII	530079	.	C	A	24.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=150;Dels=0.00;FS=18.225;HaplotypeScore=6.6839;MLEAC=1;MLEAF=0.500;MQ=47.35;MQ0=0;MQRankSum=-4.660;QD=0.16;ReadPosRankSum=-6.036;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:131,19:150:54:54,0,1065
chrVII	530082	.	T	C	19.06	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.551;DP=150;Dels=0.00;FS=18.299;HaplotypeScore=4.2266;MLEAC=1;MLEAF=0.500;MQ=47.74;MQ0=0;MQRankSum=-4.760;QD=0.13;ReadPosRankSum=-6.771;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:130,20:150:49:49,0,1172
chrVII	530308	.	A	G	1804	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=17.02;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:1837,201,0
chrVII	530472	.	A	T	2463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=107;Dels=0.00;FS=2.884;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.438;QD=23.02;ReadPosRankSum=2.404;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2496,261,0
chrVII	530583	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.0155;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.71;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1713,177,0
chrVII	530647	.	A	G	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.831;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.024;QD=20.19;ReadPosRankSum=1.685;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1527,171,0
chrVII	530805	.	A	T	1061	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5885;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.65;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1094,114,0
chrVII	531034	.	T	C	786	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.72;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:93:819,93,0
chrVII	531080	.	T	C	749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=41;Dels=0.00;FS=14.449;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.520;QD=18.27;ReadPosRankSum=2.327;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:2,39:41:84:782,84,0
chrVII	531261	.	G	T	906	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=25.89;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:99:939,99,0
chrVII	531322	.	G	A	961	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.3283;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.97;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:99:994,102,0
chrVII	531431	.	G	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=27.18;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1582,162,0
chrVII	531684	.	A	T	811	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=17.26;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:844,87,0
chrVII	532242	.	C	T	1799	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.5573;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.99;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1832,189,0
chrVII	533243	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.73;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1196,126,0
chrVII	533626	.	C	T	1164	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.64;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1197,129,0
chrVII	533759	.	T	C	2076	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.8589;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.07;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2109,228,0
chrVII	534011	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=5.497;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.755;QD=17.40;ReadPosRankSum=1.688;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,77:81:99:1442,159,0
chrVII	534162	.	A	G	2204	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.33;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2237,246,0
chrVII	534518	.	C	T	4266.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.39;SB=-1.985e+03	GT:AD:DP:GQ:PL	1/1:0,167:168:99:4266,451,0
chrVII	534684	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.96;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1790,201,0
chrVII	534707	.	G	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.22;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1893,204,0
chrVII	534739	.	T	C	1911	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5284;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=19.70;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1944,210,0
chrVII	534914	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=23.49;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1630,177,0
chrVII	534961	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=19.40;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1333,141,0
chrVII	534966	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=63.5321;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=19.45;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1375,141,0
chrVII	535018	.	T	A	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.832;DP=79;Dels=0.00;FS=16.937;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=1.221;QD=19.51;ReadPosRankSum=2.832;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1574,165,0
chrVII	535120	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-0.137;QD=20.48;ReadPosRankSum=1.677;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1323,144,0
chrVII	535135	.	C	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=21.00;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1188,126,0
chrVII	535212	.	G	T	364	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=14.56;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:45:397,45,0
chrVII	535692	.	A	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=23.81;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1700,183,0
chrVII	535766	.	A	T	51.97	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.22;MQ0=4;QD=7.42;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:4,3:7:9:84,9,0
chrVII	541712	.	A	G	437	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.26;MQ0=0;QD=7.67;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:51:470,51,0
chrVII	541808	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.39;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1138,123,0
chrVII	541809	.	C	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.75;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1198,129,0
chrVII	541947	.	A	G	1017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;MQRankSum=-0.107;QD=17.53;ReadPosRankSum=2.237;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1050,114,0
chrVII	541949	.	A	G	958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;MQRankSum=-1.147;QD=17.42;ReadPosRankSum=2.360;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:991,105,0
chrVII	541990	.	A	G	1323	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=17.18;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1356,147,0
chrVII	542099	.	A	C	2019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=5.199;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=1.155;QD=21.03;ReadPosRankSum=1.660;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2052,228,0
chrVII	542100	.	G	A	2022	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.51;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2055,216,0
chrVII	542283	.	C	T	2154	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.20;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2187,234,0
chrVII	542757	.	A	G	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.036;QD=22.26;ReadPosRankSum=1.696;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2170,231,0
chrVII	543120	.	C	T	1967	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.62;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2000,210,0
chrVII	543267	.	G	A	2405	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.58;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2438,252,0
chrVII	543291	.	A	G	2552	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.63;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2585,279,0
chrVII	543476	.	A	T	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=4.216;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.105;QD=24.55;ReadPosRankSum=1.627;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1653,171,0
chrVII	543658	.	G	C	1928	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.66;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1961,210,0
chrVII	544219	.	A	G	937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.067;QD=18.02;ReadPosRankSum=1.666;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:970,105,0
chrVII	544222	.	C	T	933	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.44;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:966,102,0
chrVII	544260	.	A	T	1080	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.734;QD=18.31;ReadPosRankSum=1.615;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1113,120,0
chrVII	544286	.	T	G	1040	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=17.63;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1073,114,0
chrVII	544385	.	T	C	2320	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=18.56;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2353,258,0
chrVII	544396	.	A	G	2049	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.160;QD=18.80;ReadPosRankSum=1.700;SB=-1.424e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2082,225,0
chrVII	544465	.	C	T	1770	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.33;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1803,189,0
chrVII	544651	.	A	C	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.894;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.4477;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.083;QD=18.59;ReadPosRankSum=2.846;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:3,82:85:99:1613,174,0
chrVII	544686	.	T	A	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.873;DP=77;Dels=0.00;FS=6.193;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;MQRankSum=-0.240;QD=14.77;ReadPosRankSum=2.258;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1170,120,0
chrVII	544845	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=18.56;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1332,141,0
chrVII	544851	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=18.52;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1163,126,0
chrVII	544864	.	C	A	980	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;QD=16.90;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1013,111,0
chrVII	544909	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=20.38;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1541,168,0
chrVII	544938	.	G	C	1863	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=21.66;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1896,204,0
chrVII	544952	.	T	C	1931	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=21.46;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1964,213,0
chrVII	545033	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=22.75;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1853,198,0
chrVII	545099	.	C	T	1637	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=23.06;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1670,171,0
chrVII	545156	.	A	C	1316	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=18.03;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1349,147,0
chrVII	545169	.	T	A	1215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;MQRankSum=-0.828;QD=17.61;ReadPosRankSum=1.682;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1248,132,0
chrVII	545175	.	G	C	1299	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=18.30;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1332,150,0
chrVII	545191	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=19.31;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1462,165,0
chrVII	545226	.	G	C	1131	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;QD=16.16;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1164,129,0
chrVII	545236	.	A	G	1118	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=17.20;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1151,129,0
chrVII	545279	.	A	T	47.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.01;FS=4.677;HaplotypeScore=84.0468;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;MQRankSum=-1.542;QD=0.51;ReadPosRankSum=1.618;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:9:80,9,0
chrVII	545319	.	T	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=14.80;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1572,162,0
chrVII	545582	.	C	T	2921	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=22.64;SB=-1.689e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2954,315,0
chrVII	545825	.	C	T	2410	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.71;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2443,255,0
chrVII	545844	.	T	C	2536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=3.859;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.826;QD=23.48;ReadPosRankSum=1.667;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2569,273,0
chrVII	545856	.	C	T	2392	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=21.17;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2425,252,0
chrVII	545954	.	C	A	2783	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=25.30;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2816,294,0
chrVII	546367	.	G	A	871	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=9.90;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:904,99,0
chrVII	546385	.	T	C	784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;MQRankSum=0.173;QD=9.68;ReadPosRankSum=1.689;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:87:817,87,0
chrVII	546392	.	G	A	861	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=76.5252;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=10.13;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:93:894,93,0
chrVII	546506	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DP=92;Dels=0.00;FS=3.522;HaplotypeScore=13.0767;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-1.232;QD=18.33;ReadPosRankSum=0.192;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1719,186,0
chrVII	547845	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=22.57;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1297,138,0
chrVII	547962	.	T	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=17.87;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1445,156,0
chrVII	548025	.	C	T	1772	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.15;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1805,192,0
chrVII	548106	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.62;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1001,105,0
chrVII	548209	.	A	G	1547	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.36;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1580,174,0
chrVII	548493	.	G	T	2138	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3427;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.02;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2171,225,0
chrVII	549148	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.22;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,55:58:99:1090,120,0
chrVII	549664	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.779;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.187;QD=22.22;ReadPosRankSum=1.685;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1677,183,0
chrVII	549847	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.95;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1433,150,0
chrVII	550438	.	A	C	1119	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.38;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1152,123,0
chrVII	551356	.	A	G	815	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.29;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:93:848,93,0
chrVII	551439	.	A	G	915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.377;QD=19.89;ReadPosRankSum=1.657;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:948,102,0
chrVII	551689	.	A	G	1442	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.18;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1475,162,0
chrVII	552400	.	C	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1625,177,0
chrVII	552534	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.35;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1134,117,0
chrVII	553252	.	G	C	1146	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=15.08;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1179,132,0
chrVII	553711	.	T	C	2271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=2.743;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.044;QD=20.28;ReadPosRankSum=2.362;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:2,110:112:99:2304,258,0
chrVII	553796	.	C	T	1112	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=16.12;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1145,117,0
chrVII	553821	.	C	A	733	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.66;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:81:766,81,0
chrVII	553824	.	G	A	787	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=15.43;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:820,87,0
chrVII	553878	.	C	T	983	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.90;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1016,105,0
chrVII	553967	.	A	G	3554.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=4.771;HaplotypeScore=8.4064;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.577;QD=23.54;ReadPosRankSum=1.201;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:1,149:151:99:3554,378,0
chrVII	554033	.	C	A	3435.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.05;SB=-1.806e+03	GT:AD:DP:GQ:PL	1/1:0,146:149:99:3435,369,0
chrVII	554608	.	T	C	2111	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.54;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2144,234,0
chrVII	554830	.	G	A	1110	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=17.62;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1143,120,0
chrVII	554853	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.55;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1257,132,0
chrVII	554980	.	G	A	2898	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.95;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2931,303,0
chrVII	555047	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=16.84;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,85:90:99:1549,162,0
chrVII	555048	.	C	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=17.30;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,78:86:99:1521,162,0
chrVII	555234	.	A	C	803	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.46;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:836,90,0
chrVII	555526	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.793;QD=23.34;ReadPosRankSum=-0.793;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1410,147,0
chrVII	555542	.	A	G	922	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=11.505;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.472;QD=16.76;ReadPosRankSum=2.316;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:955,105,0
chrVII	556096	.	A	G	839	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:96:872,96,0
chrVII	557243	.	T	C	2294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.431;QD=24.67;ReadPosRankSum=1.694;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2327,252,0
chrVII	557597	.	C	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1368,144,0
chrVII	558497	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.69;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1660,186,0
chrVII	558800	.	G	T	1266	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.18;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1299,141,0
chrVII	558809	.	T	C	1237	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.62;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1270,141,0
chrVII	558946	.	G	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.41;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1512,156,0
chrVII	558969	.	G	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.58;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1453,156,0
chrVII	559340	.	A	G	2105	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=60.56;MQ0=0;QD=24.20;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2138,231,0
chrVII	559498	.	G	A	1374	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=21.47;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1407,147,0
chrVII	560083	.	G	A	1816	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.42;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1849,201,0
chrVII	560314	.	A	C	2077	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.58;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2110,228,0
chrVII	560350	.	C	T	1732	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.87;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1765,183,0
chrVII	560364	.	C	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=19.03;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1517,159,0
chrVII	560495	.	C	T	965	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=14.85;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:998,105,0
chrVII	560520	.	G	A	1300	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.05;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1333,144,0
chrVII	560557	.	A	G	1460	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.28;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1493,165,0
chrVII	561434	.	A	C	1693	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=23.19;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1726,186,0
chrVII	561585	.	A	C	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.6402;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;MQRankSum=-0.239;QD=21.46;ReadPosRankSum=1.673;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1299,144,0
chrVII	561645	.	G	A	322	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=12.8990;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=16.95;SB=-6.301e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:36:355,36,0
chrVII	561745	.	A	C	1336	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=20.55;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1369,144,0
chrVII	561747	.	G	T	1350	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=20.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1383,141,0
chrVII	561756	.	G	A	1243	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.07;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1276,135,0
chrVII	568130	.	G	C	1823	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=23.37;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1856,210,0
chrVII	568138	.	G	A	1489	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=21.27;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1522,174,0
chrVII	568139	.	G	A	1615	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=23.75;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1648,180,0
chrVII	568150	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=21.92;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1480,165,0
chrVII	568237	.	A	G	2247	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=24.16;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2280,249,0
chrVII	568306	.	A	G	2260	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=22.38;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2293,249,0
chrVII	568323	.	A	G	2305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.793;QD=21.54;ReadPosRankSum=1.667;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2338,249,0
chrVII	568421	.	G	T	2539	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9754;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.16;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2572,279,0
chrVII	568463	.	T	A	1664	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=21.61;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1697,189,0
chrVII	568483	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=19.06;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1005,114,0
chrVII	568505	.	G	C	675	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=26.6844;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=0;QD=16.87;SB=-9.401e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:81:708,81,0
chrVII	568510	.	T	C	630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.199;DP=43;Dels=0.00;FS=35.473;HaplotypeScore=29.5908;MLEAC=2;MLEAF=1.00;MQ=33.47;MQ0=0;MQRankSum=-2.279;QD=14.65;ReadPosRankSum=3.199;SB=-7.201e+01	GT:AD:DP:GQ:PL	1/1:4,39:43:75:663,75,0
chrVII	568593	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.10;MQ0=0;QD=22.25;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1301,135,0
chrVII	568617	.	G	A	1300	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=21.31;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1333,138,0
chrVII	568646	.	G	C	819	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=16.06;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:93:852,93,0
chrVII	568662	.	G	A	777	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.03;MQ0=0;QD=16.89;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:87:810,87,0
chrVII	568669	.	A	T	649	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=16.22;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:72:682,72,0
chrVII	568674	.	G	C	610	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.42;MQ0=0;QD=16.05;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:72:643,72,0
chrVII	568734	.	T	G	281	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=14.05;SB=-8.666e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:36:314,36,0
chrVII	574373	.	G	A	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.231;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=19.67;MQ0=7;MQRankSum=-0.358;QD=1.15;ReadPosRankSum=1.231;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:4,8:13:6:46,6,0
chrVII	574724	.	T	C	392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;MQRankSum=-2.226;QD=7.13;ReadPosRankSum=2.360;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:45:425,45,0
chrVII	574745	.	G	A	922	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=12.63;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:955,99,0
chrVII	574931	.	G	A	1187	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=26.98;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1220,123,0
chrVII	575122	.	A	G	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=78;Dels=0.00;FS=2.875;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.866;QD=19.32;ReadPosRankSum=2.353;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:2,74:78:99:1540,171,0
chrVII	575154	.	C	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.83;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1539,162,0
chrVII	575955	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9296;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.80;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1468,153,0
chrVII	578356	.	G	A	751	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.32;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:784,81,0
chrVII	578379	.	G	A	456	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=14.25;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:51:489,51,0
chrVII	578422	.	A	G	670	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.94;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:703,78,0
chrVII	578448	.	G	A	745	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.03;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:778,81,0
chrVII	578512	.	C	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=19.24;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1091,117,0
chrVII	578520	.	C	A	1141	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.34;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1174,123,0
chrVII	578702	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.87;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1033,114,0
chrVII	578731	.	T	C	1133	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.88;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1166,126,0
chrVII	578794	.	A	G	1694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=9.892;HaplotypeScore=13.1984;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=2.258;QD=22.00;ReadPosRankSum=2.386;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1727,186,0
chrVII	578860	.	T	C	2082	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=23.13;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2115,228,0
chrVII	578924	.	A	G	3034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.212;QD=21.83;ReadPosRankSum=1.707;SB=-1.747e+03	GT:AD:DP:GQ:PL	1/1:1,138:139:99:3067,330,0
chrVII	579120	.	T	C	1738	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.87;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1771,195,0
chrVII	579227	.	G	A	3129	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.376e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3162,325,0
chrVII	579313	.	C	T	3488.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.10;SB=-1.943e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:3488,361,0
chrVII	579729	.	A	G	2789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.675;QD=22.86;ReadPosRankSum=1.703;SB=-1.486e+03	GT:AD:DP:GQ:PL	1/1:1,120:122:99:2822,309,0
chrVII	580178	.	G	T	986	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.91;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1019,105,0
chrVII	582103	.	G	A	1800	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1833,201,0
chrVII	582257	.	G	A	664	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.90;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:75:697,75,0
chrVII	582400	.	C	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.06;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1637,171,0
chrVII	582452	.	C	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=9.7796;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.79;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1384,144,0
chrVII	582502	.	T	A	885	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:918,96,0
chrVII	582800	.	C	T	1619	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=15.2545;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.81;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1652,177,0
chrVII	583375	.	G	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.56;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1219,132,0
chrVII	583599	.	C	T	2043	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.97;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2076,219,0
chrVII	583976	.	T	C	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.400;QD=20.06;ReadPosRankSum=0.111;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1919,189,0
chrVII	584065	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.54;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1476,162,0
chrVII	584132	.	C	G	1426	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.97;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1459,162,0
chrVII	584298	.	T	C	711	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:744,81,0
chrVII	584635	.	A	T	735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=7.482;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=1.491;QD=15.00;ReadPosRankSum=2.198;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:90:768,90,0
chrVII	584636	.	T	A	729	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=15.85;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:90:762,90,0
chrVII	584683	.	C	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.39;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1175,129,0
chrVII	584802	.	C	T	2707	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.75;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2740,294,0
chrVII	584916	.	G	A	1595	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.7545;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.85;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1628,177,0
chrVII	584978	.	T	C	1232	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.00;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1265,138,0
chrVII	585082	.	G	C	1821	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.2984;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.94;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1854,195,0
chrVII	585274	.	T	C	690	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.238;QD=19.71;ReadPosRankSum=1.634;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:78:723,78,0
chrVII	585455	.	T	C	1030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.237;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.440;QD=17.46;ReadPosRankSum=1.674;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1063,114,0
chrVII	585500	.	A	G	1125	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3513;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.732;QD=18.75;ReadPosRankSum=1.675;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1158,129,0
chrVII	585680	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.8297;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.00;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1505,159,0
chrVII	585806	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.45;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1239,132,0
chrVII	585848	.	C	T	2019	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.75;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2052,222,0
chrVII	586087	.	A	G	1333	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.20;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1366,150,0
chrVII	586149	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=5.404;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.321;QD=22.34;ReadPosRankSum=1.674;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1351,144,0
chrVII	586211	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.64;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1192,129,0
chrVII	592407	.	T	C	2021	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.62;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2054,219,0
chrVII	592476	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.39;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1937,210,0
chrVII	592532	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.73;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1552,162,0
chrVII	592637	.	G	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7979;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.73;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1228,135,0
chrVII	592944	.	T	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.46;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1098,120,0
chrVII	593080	.	A	G	552	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.23;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:63:585,63,0
chrVII	593220	.	G	A	671	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.97;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:72:704,72,0
chrVII	593466	.	C	T	1872	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=60.05;MQ0=0;QD=24.00;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1905,201,0
chrVII	593486	.	T	A	2005	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.197;QD=25.38;ReadPosRankSum=1.688;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,78:79:99:2038,210,0
chrVII	593663	.	C	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.92;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1325,135,0
chrVII	594021	.	G	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.64;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1622,177,0
chrVII	594319	.	G	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2235;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.10;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1447,156,0
chrVII	594391	.	C	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=21.55;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1412,153,0
chrVII	594420	.	G	A	1433	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=19.63;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1466,153,0
chrVII	594432	.	A	G	1261	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=17.51;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1294,141,0
chrVII	594587	.	C	T	1056	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.31;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1089,114,0
chrVII	594654	.	G	C	1158	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.63;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1191,129,0
chrVII	594770	.	T	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.27;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1373,147,0
chrVII	594794	.	T	C	1558	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.821;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;MQRankSum=0.236;QD=17.70;ReadPosRankSum=1.693;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1591,177,0
chrVII	594798	.	A	G	1641	SnpCluster	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=16.74;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1674,192,0
chrVII	594802	.	T	A	1702	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=16.52;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1735,186,0
chrVII	594854	.	T	C	2219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=105;Dels=0.03;FS=0.000;HaplotypeScore=17.0923;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.943;QD=21.13;ReadPosRankSum=1.698;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2252,240,0
chrVII	594882	.	T	C	2576	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;DP=116;Dels=0.00;FS=5.160;HaplotypeScore=12.6292;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=1.823;QD=22.21;ReadPosRankSum=1.944;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:4,112:116:99:2609,282,0
chrVII	594909	.	C	T	2779	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.81;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2812,291,0
chrVII	594933	.	T	G	2119	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.40;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2152,234,0
chrVII	595174	.	C	A	2584	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4777;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.01;SB=-1.526e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2617,288,0
chrVII	595660	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.89;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1544,162,0
chrVII	595667	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.72;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1433,150,0
chrVII	595834	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2897;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.121;QD=19.05;ReadPosRankSum=1.692;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1671,180,0
chrVII	595888	.	T	C	2543	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.91;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2576,276,0
chrVII	595912	.	G	A	2509	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.44;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2542,261,0
chrVII	595917	.	G	C	2373	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.63;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2406,258,0
chrVII	595991	.	A	G	2290	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7357;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.90;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2323,261,0
chrVII	596110	.	T	C	2105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-1.566;QD=20.24;ReadPosRankSum=1.666;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2138,231,0
chrVII	596127	.	T	A	2507	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.38;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2540,264,0
chrVII	596214	.	G	A	3329.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=12.3646;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=22.65;SB=-1.429e+03	GT:AD:DP:GQ:PL	1/1:0,146:147:99:3329,348,0
chrVII	596396	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.278;QD=19.72;ReadPosRankSum=1.689;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1630,180,0
chrVII	596464	.	T	C	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=5.661;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.706;QD=19.79;ReadPosRankSum=1.689;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1656,180,0
chrVII	596505	.	T	A	1471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=87;Dels=0.00;FS=10.611;HaplotypeScore=6.3778;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.241;QD=16.91;ReadPosRankSum=2.280;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1504,156,0
chrVII	596510	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=18.16;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1504,159,0
chrVII	596542	.	A	G	1497	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.26;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1530,168,0
chrVII	596544	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=18.73;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1588,171,0
chrVII	596681	.	C	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.52;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1857,192,0
chrVII	596824	.	A	G	657	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.32;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:72:690,72,0
chrVII	597022	.	A	G	1499	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.37;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1532,171,0
chrVII	597103	.	A	G	1848	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.387;QD=21.74;ReadPosRankSum=1.651;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1881,204,0
chrVII	597126	.	G	C	1729	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.45;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1762,189,0
chrVII	597187	.	T	A	1671	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.89;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1704,174,0
chrVII	597202	.	T	G	1572	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.96;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1605,177,0
chrVII	597250	.	C	T	1131	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.54;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1164,123,0
chrVII	597574	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.6179;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.58;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1716,177,0
chrVII	597592	.	G	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.85;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1305,135,0
chrVII	598397	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1069,111,0
chrVII	598538	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.77;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1487,153,0
chrVII	598662	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=21.71;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1379,150,0
chrVII	598680	.	C	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.0330;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=22.25;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1546,165,0
chrVII	598733	.	C	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.6376;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.82;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1361,144,0
chrVII	598948	.	C	T	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=0.62;SB=-4.278e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:6:54,6,0
chrVII	599081	.	G	A	1464	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.05;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1497,159,0
chrVII	599100	.	T	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.66;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1266,138,0
chrVII	599198	.	A	C	913	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.26;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:946,99,0
chrVII	599515	.	G	A	947	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.67;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:980,102,0
chrVII	599611	.	G	C	1087	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.42;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1120,120,0
chrVII	599725	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.51;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1345,141,0
chrVII	599815	.	T	C	931	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.16;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:964,105,0
chrVII	599896	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.2311;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.23;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1243,132,0
chrVII	600929	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1955,219,0
chrVII	601311	.	C	T	2640	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.1714;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-1.459e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2673,282,0
chrVII	604120	.	C	A	2076	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.42;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2109,219,0
chrVII	606906	.	A	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=24.97;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1706,177,0
chrVII	607024	.	C	T	2264	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.83;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2297,240,0
chrVII	607146	.	A	G	3332.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=23.14;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:3332,354,0
chrVII	607156	.	G	A	3355.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.3122;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=22.22;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3355,357,0
chrVII	607203	.	C	T	3088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.5908;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=1.747;QD=22.06;ReadPosRankSum=-0.448;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:2,138:140:99:3121,330,0
chrVII	607245	.	T	C	2499	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.93;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2532,267,0
chrVII	607268	.	T	A	2227	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=22.96;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2260,234,0
chrVII	607269	.	T	A	2158	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=22.48;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2191,231,0
chrVII	607298	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5449;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.05;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1603,171,0
chrVII	607320	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=16.46;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1399,156,0
chrVII	607417	.	T	A	4051.01	PASS	AC=2;AF=1.00;AN=2;DP=177;Dels=0.01;FS=0.000;HaplotypeScore=22.5352;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.89;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:4051,424,0
chrVII	607457	.	C	T	3547.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=20.86;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,166:168:99:3547,378,0
chrVII	607458	.	C	T	3582.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.32;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,166:168:99:3582,375,0
chrVII	608216	.	A	G	1793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=1.386;QD=22.41;ReadPosRankSum=1.602;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1826,195,0
chrVII	609150	.	C	G	1099	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.44;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1132,126,0
chrVII	609307	.	G	A	976	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=49.9816;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=16.54;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1009,102,0
chrVII	609325	.	A	T	711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.5148;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;MQRankSum=0.793;QD=12.05;ReadPosRankSum=1.674;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:78:744,78,0
chrVII	609360	.	A	G	944	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=2.8489;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=16.00;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:977,105,0
chrVII	609400	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.57;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1342,144,0
chrVII	609644	.	T	C	1836	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.18;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1869,204,0
chrVII	609711	.	C	G	1707	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7964;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.40;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1740,189,0
chrVII	609750	.	C	T	1485	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.29;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1518,162,0
chrVII	609822	.	G	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.07;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1137,117,0
chrVII	609928	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.31;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1631,174,0
chrVII	610303	.	T	C	1395	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.65;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1428,153,0
chrVII	610875	.	C	T	1936	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.38;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1969,210,0
chrVII	611746	.	T	C	76.51	PASS	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.30;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,5:5:12:109,12,0
chrVII	612759	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.89;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1621,171,0
chrVII	613788	.	G	T	1353	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.33;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1386,144,0
chrVII	615761	.	C	G	2001	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.52;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2034,216,0
chrVII	620376	.	A	G	2129	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.29;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2162,231,0
chrVII	620815	.	A	T	3819.01	PASS	AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.08;SB=-1.921e+03	GT:AD:DP:GQ:PL	1/1:0,173:173:99:3819,411,0
chrVII	621299	.	C	T	1387	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.34;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1420,153,0
chrVII	621722	.	A	G	1221	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.9806;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.73;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1254,141,0
chrVII	622738	.	C	T	2499	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.93;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2532,267,0
chrVII	625418	.	A	G	966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=2.915;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.337;QD=17.56;ReadPosRankSum=2.360;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:999,108,0
chrVII	626202	.	T	C	1243	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.45;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1276,141,0
chrVII	626890	.	C	A	1077	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=22.91;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1110,120,0
chrVII	627066	.	G	A	1905	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=26.10;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1938,198,0
chrVII	627362	.	A	T	2294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=98;Dels=0.00;FS=11.137;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.372;QD=23.41;ReadPosRankSum=2.347;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:99:2327,246,0
chrVII	627746	.	T	C	2018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=93;Dels=0.00;FS=3.256;HaplotypeScore=8.7606;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.704;QD=21.70;ReadPosRankSum=1.694;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:1,90:93:99:2051,225,0
chrVII	627924	.	A	C	1687	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.91;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1720,183,0
chrVII	628958	.	T	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.10;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1621,171,0
chrVII	629606	.	C	T	2168	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2201,228,0
chrVII	629962	.	C	T	1889	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.76;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1922,198,0
chrVII	630680	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=21.44;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1448,150,0
chrVII	630686	.	C	A	1328	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=20.75;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1361,141,0
chrVII	630691	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;MQRankSum=-0.262;QD=17.98;ReadPosRankSum=1.680;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1220,135,0
chrVII	631272	.	G	T	1872	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1905,210,0
chrVII	631824	.	G	C	2406	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.4607;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.11;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2439,270,0
chrVII	632357	.	C	A	1495	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.73;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1528,159,0
chrVII	633090	.	C	A	2084	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.6534;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.84;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2117,219,0
chrVII	634339	.	G	A	2195	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.86;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2228,237,0
chrVII	634381	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.48;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1856,201,0
chrVII	634640	.	G	A	1955	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.22;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1988,216,0
chrVII	634721	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.60;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1434,156,0
chrVII	634798	.	T	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.60;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1406,153,0
chrVII	635537	.	T	A	139.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.470;QD=9.27;ReadPosRankSum=1.470;SB=-2.904e+01	GT:AD:DP:GQ:PL	1/1:1,14:15:21:172,21,0
chrVII	635547	.	T	A	453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.578;QD=21.57;ReadPosRankSum=1.569;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:1,20:21:51:486,51,0
chrVII	635861	.	C	T	973	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.11;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1006,105,0
chrVII	636165	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1684,189,0
chrVII	637125	.	G	T	2372	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.8877;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.10;SB=-1.563e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2405,246,0
chrVII	637449	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.51;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1901,201,0
chrVII	637458	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.84;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1911,204,0
chrVII	637604	.	T	G	1966	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.13;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1999,213,0
chrVII	637614	.	C	T	1993	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.91;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2026,210,0
chrVII	637963	.	T	C	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.275;QD=20.28;ReadPosRankSum=1.694;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:1,90:93:99:1919,207,0
chrVII	638188	.	G	A	2531	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1103;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.60;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2564,270,0
chrVII	638253	.	T	C	1984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.081;DP=95;Dels=0.00;FS=5.119;HaplotypeScore=14.5464;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.590;QD=20.88;ReadPosRankSum=2.838;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:4,90:95:99:2017,219,0
chrVII	638787	.	T	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.40;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1196,132,0
chrVII	638835	.	C	T	889	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.14;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:922,102,0
chrVII	638846	.	A	T	742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=1.007;QD=17.26;ReadPosRankSum=0.121;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:81:775,81,0
chrVII	638935	.	A	G	1398	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1431,156,0
chrVII	639017	.	C	T	1741	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.21;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1774,186,0
chrVII	639055	.	T	G	2103	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.63;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:2136,225,0
chrVII	639145	.	G	C	1696	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.0658;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.47;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1729,189,0
chrVII	639331	.	T	C	2437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3605;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=-0.433;QD=23.43;ReadPosRankSum=1.699;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2470,273,0
chrVII	639460	.	C	T	1546	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.74;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1579,165,0
chrVII	639627	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=16.50;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1683,177,0
chrVII	639686	.	A	C	81.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.245;DP=122;Dels=0.00;FS=1.118;HaplotypeScore=146.3540;MLEAC=1;MLEAF=0.500;MQ=49.76;MQ0=1;MQRankSum=2.412;QD=0.66;ReadPosRankSum=-3.880;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:107,15:122:99:111,0,201
chrVII	639690	.	A	C	87.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=122;Dels=0.00;FS=9.930;HaplotypeScore=21.4204;MLEAC=1;MLEAF=0.500;MQ=49.30;MQ0=1;MQRankSum=-1.155;QD=0.71;ReadPosRankSum=5.838;SB=-5.220e+02	GT:AD:DP:GQ:PL	0/1:30,90:122:99:117,0,143
chrVII	639715	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.8811;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=15.22;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1388,150,0
chrVII	639762	.	T	A	909	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=13.37;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:942,102,0
chrVII	639768	.	C	T	755	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=13.02;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:84:788,84,0
chrVII	639931	.	A	G	732	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=18.77;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:765,84,0
chrVII	640411	.	C	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.74;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1055,108,0
chrVII	640432	.	A	G	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.913;QD=19.98;ReadPosRankSum=1.669;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1132,105,0
chrVII	640786	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.36;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1116,120,0
chrVII	641220	.	T	C	1523	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.20;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1556,165,0
chrVII	642042	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.49;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1630,174,0
chrVII	642145	.	G	A	2421	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=21.42;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2454,255,0
chrVII	642162	.	G	A	2263	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=19.85;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2296,237,0
chrVII	642168	.	A	G	2117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.798;QD=18.25;ReadPosRankSum=1.672;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2150,231,0
chrVII	642227	.	A	C	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=0.742;QD=16.67;ReadPosRankSum=1.691;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1450,153,0
chrVII	642373	.	T	C	2145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.106;HaplotypeScore=9.6300;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.226;QD=23.06;ReadPosRankSum=1.657;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2178,231,0
chrVII	642480	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.19;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1559,171,0
chrVII	642561	.	A	G	971	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=16.18;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1004,111,0
chrVII	642577	.	C	T	1183	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5362;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.78;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1216,126,0
chrVII	642606	.	A	T	1513	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.317;QD=21.31;ReadPosRankSum=1.635;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1546,159,0
chrVII	642633	.	C	T	1569	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.61;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1602,171,0
chrVII	642723	.	T	C	1739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=3.882;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.039;QD=19.76;ReadPosRankSum=1.653;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1772,192,0
chrVII	642988	.	T	A	1774	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.93;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1807,192,0
chrVII	643082	.	G	T	2910	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.6435;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.73;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2943,306,0
chrVII	643151	.	T	A	2250	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.68;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2283,237,0
chrVII	643280	.	G	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.09;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1098,120,0
chrVII	643548	.	G	C	1682	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.28;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1715,186,0
chrVII	643560	.	T	C	1655	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.19;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1688,177,0
chrVII	643676	.	A	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.06;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1718,192,0
chrVII	643727	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=17.68;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1589,168,0
chrVII	643743	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=16.46;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1564,171,0
chrVII	644097	.	A	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.47;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1384,147,0
chrVII	644400	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.845;QD=20.85;ReadPosRankSum=1.648;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1743,192,0
chrVII	644454	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8343;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.26;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1694,177,0
chrVII	645454	.	T	A	2016	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.20;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2049,210,0
chrVII	645493	.	T	G	2131	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.53;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2164,240,0
chrVII	645955	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4894;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.94;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1738,192,0
chrVII	645958	.	G	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7007;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.65;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1821,198,0
chrVII	646047	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.75;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1767,192,0
chrVII	646177	.	T	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.08;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1407,156,0
chrVII	646899	.	A	G	988	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.081;DP=53;Dels=0.00;FS=8.780;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.017;QD=18.64;ReadPosRankSum=3.283;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:4,49:53:99:1021,111,0
chrVII	647032	.	C	T	2088	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=16.98;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2121,231,0
chrVII	647038	.	T	C	2194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.644;QD=18.13;ReadPosRankSum=1.675;SB=-1.532e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2227,243,0
chrVII	647545	.	C	T	2328	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.82;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2361,249,0
chrVII	647725	.	T	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.35;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1486,159,0
chrVII	647762	.	G	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.45;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1620,168,0
chrVII	647897	.	T	A	2355	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.66;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2388,264,0
chrVII	648206	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.14;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1682,183,0
chrVII	648788	.	T	C	938	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=17.70;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:971,108,0
chrVII	648839	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=21.80;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1232,138,0
chrVII	648936	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=22.82;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1539,159,0
chrVII	648954	.	T	G	1534	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=21.31;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1567,168,0
chrVII	649033	.	A	C	1548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=5.088;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.659;QD=21.80;ReadPosRankSum=1.683;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1581,174,0
chrVII	649105	.	G	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=20.56;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1246,126,0
chrVII	649151	.	T	G	855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;MQRankSum=-1.619;QD=14.02;ReadPosRankSum=1.619;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:96:888,96,0
chrVII	649172	.	C	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=16.62;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1080,111,0
chrVII	649387	.	G	A	1612	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=18.32;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1645,177,0
chrVII	649458	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.011;DP=108;Dels=0.00;FS=2.633;HaplotypeScore=86.0442;MLEAC=2;MLEAF=1.00;MQ=41.21;MQ0=0;MQRankSum=-1.834;QD=10.74;ReadPosRankSum=0.832;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:2,106:108:99:1193,135,0
chrVII	649473	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=89.4447;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=13.76;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1409,147,0
chrVII	649518	.	G	T	1734	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=15.91;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1767,189,0
chrVII	649569	.	G	T	140.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.847;DP=99;Dels=0.00;FS=85.290;HaplotypeScore=7.3013;MLEAC=1;MLEAF=0.500;MQ=54.81;MQ0=0;MQRankSum=-1.610;QD=1.41;ReadPosRankSum=-5.152;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,53:99:99:170,0,508
chrVII	649573	.	C	T	66.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;DP=75;Dels=0.01;FS=54.139;HaplotypeScore=9.4347;MLEAC=1;MLEAF=0.500;MQ=54.41;MQ0=0;MQRankSum=1.999;QD=0.88;ReadPosRankSum=-6.215;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,29:74:96:96,0,502
chrVII	649661	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.74;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1630,177,0
chrVII	649865	.	A	G	2336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=121;Dels=0.00;FS=5.743;HaplotypeScore=18.2829;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.042;QD=19.31;ReadPosRankSum=2.909;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:3,118:121:99:2369,258,0
chrVII	649985	.	C	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.46;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1857,192,0
chrVII	650278	.	A	G	2031	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.72;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2064,225,0
chrVII	650728	.	G	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.45;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1135,120,0
chrVII	650923	.	C	T	765	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.79;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:84:798,84,0
chrVII	651243	.	G	A	3463.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.74;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3463,363,0
chrVII	651425	.	A	G	744	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.71;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:777,87,0
chrVII	651434	.	A	G	802	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.71;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:835,90,0
chrVII	651866	.	G	A	1656	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.00;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1689,180,0
chrVII	652013	.	A	G	1574	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.86;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1607,174,0
chrVII	652017	.	A	G	1628	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.14;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1661,174,0
chrVII	652173	.	T	G	726	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=14.52;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:84:759,84,0
chrVII	652243	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.64;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1486,156,0
chrVII	652295	.	T	C	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.097;DP=63;Dels=0.00;FS=9.685;HaplotypeScore=6.6519;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.451;QD=17.87;ReadPosRankSum=2.372;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1159,126,0
chrVII	652337	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.323;QD=18.49;ReadPosRankSum=1.674;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1124,123,0
chrVII	652400	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.00;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1398,147,0
chrVII	652445	.	A	T	927	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=20.60;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:960,99,0
chrVII	652448	.	A	G	900	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.02;FS=0.000;HaplotypeScore=3.3868;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=19.57;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:933,99,0
chrVII	652742	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9311;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=17.81;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1315,141,0
chrVII	652754	.	T	C	897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;MQRankSum=0.192;QD=14.24;ReadPosRankSum=1.622;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:930,102,0
chrVII	652970	.	A	G	1817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0385;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=1.227;QD=18.73;ReadPosRankSum=1.624;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1850,207,0
chrVII	653026	.	T	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.48;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1789,192,0
chrVII	653036	.	A	G	1536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=2.970;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.105;QD=18.73;ReadPosRankSum=2.390;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1569,174,0
chrVII	653044	.	G	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.90;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1526,162,0
chrVII	653088	.	C	T	1141	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=17.29;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1174,126,0
chrVII	653157	.	T	G	1207	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=66;Dels=0.00;FS=3.078;HaplotypeScore=8.9653;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.679;QD=18.29;ReadPosRankSum=-0.346;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1240,138,0
chrVII	653224	.	T	A	949	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.615;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=21.7179;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=1.086;QD=15.82;ReadPosRankSum=1.263;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:982,111,0
chrVII	653248	.	A	C	313	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=10.79;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,26:29:39:346,39,0
chrVII	653367	.	A	G	1369	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.73;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1402,159,0
chrVII	653483	.	T	C	2123	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.3417;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=22.83;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2156,231,0
chrVII	653526	.	A	G	2226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=4.427;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=-0.625;QD=22.95;ReadPosRankSum=1.625;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2259,246,0
chrVII	653694	.	C	G	1738	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.31;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1771,195,0
chrVII	653750	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.1146;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;QD=18.02;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1727,183,0
chrVII	653764	.	A	T	1653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=112;Dels=0.00;FS=5.804;HaplotypeScore=5.1884;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-0.469;QD=14.76;ReadPosRankSum=2.757;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:3,109:112:99:1686,183,0
chrVII	653791	.	C	T	2187	SnpCluster	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=18.07;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2220,228,0
chrVII	653798	.	A	G	1834	SnpCluster	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.69;MQ0=0;QD=15.68;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1867,204,0
chrVII	653801	.	G	A	1920	SnpCluster	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=16.41;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:1953,207,0
chrVII	653930	.	T	C	1909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.6996;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.650;QD=22.46;ReadPosRankSum=1.691;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1942,210,0
chrVII	654129	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-1.522;QD=21.86;ReadPosRankSum=1.575;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1476,159,0
chrVII	655399	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.75;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1229,132,0
chrVII	655839	.	A	T	1114	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.88;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1147,123,0
chrVII	656248	.	T	G	1893	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.66;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1926,204,0
chrVII	657389	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7387;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.35;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1364,144,0
chrVII	658787	.	A	T	2260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.887;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.577;QD=24.30;ReadPosRankSum=1.658;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2293,243,0
chrVII	661547	.	C	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.54;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1142,123,0
chrVII	663657	.	T	G	1529	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1562,171,0
chrVII	663901	.	T	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.38;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1163,126,0
chrVII	664440	.	C	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.90;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1120,120,0
chrVII	664995	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.42;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1836,189,0
chrVII	665923	.	T	C	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.199;QD=20.58;ReadPosRankSum=1.626;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1371,144,0
chrVII	666649	.	C	T	2193	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.21;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2226,234,0
chrVII	668528	.	C	T	1141	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.94;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1174,126,0
chrVII	668812	.	G	A	1171	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1204,129,0
chrVII	670080	.	G	C	1991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6607;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.523;QD=23.15;ReadPosRankSum=0.939;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:1,82:86:99:2024,222,0
chrVII	670374	.	C	T	1783	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.97;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1816,192,0
chrVII	670580	.	G	A	2277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=94;Dels=0.00;FS=3.106;HaplotypeScore=6.1196;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.619;QD=24.22;ReadPosRankSum=-0.113;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:1,91:94:99:2310,237,0
chrVII	670910	.	C	A	1896	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.79;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1929,201,0
chrVII	672695	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1263,129,0
chrVII	674693	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.73;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1197,126,0
chrVII	674753	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.62;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1249,135,0
chrVII	674888	.	T	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.7984;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.07;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1824,198,0
chrVII	675399	.	A	G	404	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=13.03;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:48:437,48,0
chrVII	675404	.	G	A	394	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=11.94;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:45:427,45,0
chrVII	675419	.	T	C	299	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=11.07;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:36:332,36,0
chrVII	675578	.	T	C	1045	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.33;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1078,120,0
chrVII	675599	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.25;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1207,126,0
chrVII	675606	.	C	T	1208	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.4306;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.30;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1241,132,0
chrVII	675625	.	C	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.2339;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.58;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1092,117,0
chrVII	675815	.	G	A	1918	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1011;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.97;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1951,207,0
chrVII	678409	.	T	A	1242	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=21.79;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1275,132,0
chrVII	678429	.	C	T	930	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.60;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:963,99,0
chrVII	678604	.	T	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=18.58;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1241,132,0
chrVII	678618	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=52.3493;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=15.97;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1167,126,0
chrVII	678679	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=15.96;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1246,135,0
chrVII	678685	.	G	A	1326	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=17.45;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1359,141,0
chrVII	678853	.	T	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.9181;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=16.87;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1163,126,0
chrVII	678864	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.837;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=-0.440;QD=19.63;ReadPosRankSum=1.629;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1348,150,0
chrVII	678934	.	C	T	1392	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.78;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1425,150,0
chrVII	679003	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=22.37;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1957,210,0
chrVII	679069	.	A	G	1069	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.80;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1102,123,0
chrVII	679099	.	G	A	1484	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.83;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1517,162,0
chrVII	679372	.	T	C	668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=5.819;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=15.90;ReadPosRankSum=1.650;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:75:701,75,0
chrVII	679489	.	T	C	877	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=17.90;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:96:910,96,0
chrVII	679768	.	T	C	387	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.59;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:45:420,45,0
chrVII	679813	.	A	G	858	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.50;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:891,96,0
chrVII	679894	.	C	G	869	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=16.40;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:902,102,0
chrVII	679897	.	A	G	868	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=16.38;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:901,102,0
chrVII	679900	.	C	T	880	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=16.60;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:913,96,0
chrVII	679928	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.33;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1353,147,0
chrVII	680071	.	T	C	960	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.00;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:993,108,0
chrVII	680113	.	C	T	1035	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.50;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1068,111,0
chrVII	680181	.	C	G	1066	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.68;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1099,120,0
chrVII	680278	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;QD=16.87;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1248,138,0
chrVII	680281	.	G	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=16.84;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1279,141,0
chrVII	680425	.	T	G	834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=47;Dels=0.00;FS=3.405;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-1.356;QD=17.74;ReadPosRankSum=1.657;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:93:867,93,0
chrVII	680431	.	C	T	716	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.36;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:78:749,78,0
chrVII	680933	.	T	C	2251	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.21;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2284,243,0
chrVII	681013	.	G	A	1309	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.54;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1342,141,0
chrVII	681049	.	G	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.47;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1357,141,0
chrVII	681152	.	G	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.82;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1343,144,0
chrVII	681307	.	C	T	1801	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.58;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1834,189,0
chrVII	681349	.	T	G	1067	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.52;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1100,120,0
chrVII	681411	.	T	C	1044	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.88;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1077,117,0
chrVII	681415	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.11;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1227,129,0
chrVII	681543	.	G	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.38;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1283,138,0
chrVII	681706	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.17;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1388,147,0
chrVII	681847	.	T	C	904	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.65;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:99:937,102,0
chrVII	681982	.	T	C	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;DP=88;Dels=0.00;FS=6.909;HaplotypeScore=11.0101;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=0.994;QD=17.10;ReadPosRankSum=2.394;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1538,168,0
chrVII	682162	.	T	C	1725	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.30;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1758,192,0
chrVII	682208	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.90;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1522,162,0
chrVII	682310	.	T	A	1501	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=22.40;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1534,162,0
chrVII	682324	.	G	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;QD=21.72;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1358,141,0
chrVII	682363	.	T	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=15.32;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1197,135,0
chrVII	682378	.	C	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5510;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=15.31;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:78:99:1227,129,0
chrVII	682394	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=15.66;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1364,147,0
chrVII	683391	.	A	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.94;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1666,177,0
chrVII	684802	.	T	C	2318	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.95;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2351,261,0
chrVII	685252	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.30;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1393,147,0
chrVII	689454	.	A	G	1352	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7790;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.48;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1385,153,0
chrVII	690131	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.0668;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=25.47;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1332,138,0
chrVII	690379	.	A	G	1774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.642;QD=23.04;ReadPosRankSum=1.687;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1807,198,0
chrVII	691916	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.03;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1531,168,0
chrVII	697548	.	G	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.36;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1388,144,0
chrVII	697829	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.23;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1414,153,0
chrVII	700472	.	G	A	1219	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.47;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1252,135,0
chrVII	701124	.	T	C	1909	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.00;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1942,210,0
chrVII	701741	.	C	T	1481	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.78;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1514,165,0
chrVII	702289	.	C	T	1923	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.23;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1956,213,0
chrVII	702818	.	A	T	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=84;Dels=0.00;FS=3.340;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.929;QD=23.10;ReadPosRankSum=1.648;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1973,204,0
chrVII	705215	.	C	T	2402	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.51;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2435,252,0
chrVII	708297	.	G	A	624	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=75;Dels=0.00;FS=8.625;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=25.69;MQ0=24;MQRankSum=-1.325;QD=8.32;ReadPosRankSum=-1.529;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:1,74:75:72:657,72,0
chrVII	708309	.	A	G	57.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=17;MQRankSum=-1.480;QD=0.68;ReadPosRankSum=-3.200;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,11:84:87:87,0,717
chrVII	708311	.	C	T	51.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.221;DP=85;Dels=0.00;FS=1.682;HaplotypeScore=3.3326;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=16;MQRankSum=-1.795;QD=0.60;ReadPosRankSum=-2.713;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,11:85:81:81,0,736
chrVII	708322	.	G	A	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.2081;MLEAC=1;MLEAF=0.500;MQ=30.33;MQ0=22;MQRankSum=-3.192;QD=0.19;ReadPosRankSum=-1.234;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,24:106:50:50,0,967
chrVII	708380	.	T	C	165.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;DP=160;Dels=0.00;FS=19.544;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=37.41;MQ0=18;MQRankSum=-7.999;QD=1.03;ReadPosRankSum=1.903;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:113,46:160:99:195,0,1875
chrVII	708677	.	T	C	261.11	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;DP=103;Dels=0.00;FS=7.499;HaplotypeScore=2.7206;MLEAC=1;MLEAF=0.500;MQ=14.92;MQ0=80;MQRankSum=1.909;QD=2.54;ReadPosRankSum=0.709;SB=-1.691e+02	GT:AD:DP:GQ:PL	0/1:43,60:103:13:291,0,13
chrVII	708909	.	C	A	114.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.586;DP=111;Dels=0.00;FS=29.610;HaplotypeScore=5.5988;MLEAC=1;MLEAF=0.500;MQ=13.52;MQ0=64;MQRankSum=2.508;QD=1.03;ReadPosRankSum=-2.404;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,46:111:99:144,0,383
chrVII	708972	.	C	T	464.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.093;DP=96;Dels=0.00;FS=9.037;HaplotypeScore=3.3673;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=29;MQRankSum=-1.992;QD=4.83;ReadPosRankSum=-0.305;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,57:96:99:494,0,508
chrVII	708983	.	T	C	436.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;DP=108;Dels=0.00;FS=15.171;HaplotypeScore=7.6381;MLEAC=1;MLEAF=0.500;MQ=22.53;MQ0=33;MQRankSum=-3.517;QD=4.04;ReadPosRankSum=1.133;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,64:108:99:466,0,626
chrVII	708985	.	A	C	435.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.811;DP=112;Dels=0.00;FS=8.556;HaplotypeScore=10.7929;MLEAC=1;MLEAF=0.500;MQ=23.85;MQ0=32;MQRankSum=-3.682;QD=3.88;ReadPosRankSum=0.914;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:46,64:112:99:465,0,635
chrVII	709051	.	T	C	223.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=49;MQRankSum=-4.446;QD=1.94;ReadPosRankSum=0.879;SB=-9.601e+01	GT:AD:DP:GQ:PL	0/1:53,62:115:99:253,0,487
chrVII	709206	.	C	T	75.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.607;DP=96;Dels=0.00;FS=4.853;HaplotypeScore=4.0832;MLEAC=1;MLEAF=0.500;MQ=11.02;MQ0=72;MQRankSum=0.174;QD=0.78;ReadPosRankSum=-0.927;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:52,44:96:99:105,0,127
chrVII	709470	.	C	T	268.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;DP=68;Dels=0.00;FS=2.623;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=17;MQRankSum=1.634;QD=3.94;ReadPosRankSum=-1.614;SB=-1.260e+02	GT:AD:DP:GQ:PL	0/1:42,26:68:99:298,0,523
chrVII	709503	.	T	C	180.03	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.94;MQ0=27;QD=4.74;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:24:213,24,0
chrVII	709587	.	C	T	175.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.768;DP=83;Dels=0.00;FS=18.243;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.32;MQ0=69;MQRankSum=1.344;QD=2.11;ReadPosRankSum=2.475;SB=-1.297e+01	GT:AD:DP:GQ:PL	1/1:40,43:83:24:208,24,0
chrVII	709707	.	A	G	959	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.017;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=14;MQRankSum=-0.302;QD=12.45;ReadPosRankSum=1.127;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:12,65:77:85:992,85,0
chrVII	710145	.	A	G	480.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.622;DP=119;Dels=0.00;FS=13.654;HaplotypeScore=5.0092;MLEAC=1;MLEAF=0.500;MQ=35.73;MQ0=0;MQRankSum=-4.154;QD=4.03;ReadPosRankSum=1.838;SB=-1.140e+02	GT:AD:DP:GQ:PL	0/1:84,35:119:99:510,0,1620
chrVII	710178	.	T	C	237.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;DP=109;Dels=0.00;FS=20.956;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=40.13;MQ0=5;MQRankSum=-3.691;QD=2.17;ReadPosRankSum=-1.561;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,25:109:99:267,0,1484
chrVII	710283	.	A	G	129.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DP=83;Dels=0.00;FS=45.609;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=23.55;MQ0=41;MQRankSum=-3.082;QD=1.55;ReadPosRankSum=2.628;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,35:83:99:159,0,437
chrVII	710359	.	G	A	44.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;DP=52;Dels=0.00;FS=16.782;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=12.93;MQ0=38;MQRankSum=0.533;QD=0.85;ReadPosRankSum=0.133;SB=0.128	GT:AD:DP:GQ:PL	0/1:30,22:52:74:74,0,131
chrVII	710841	.	C	T	345.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.554;DP=100;Dels=0.00;FS=66.015;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.36;MQ0=59;MQRankSum=-0.198;QD=3.45;ReadPosRankSum=-3.824;SB=-1.438e+01	GT:AD:DP:GQ:PL	0/1:61,38:100:99:375,0,305
chrVII	710916	.	A	G	66.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DP=63;Dels=0.00;FS=69.350;HaplotypeScore=9.8235;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=7;MQRankSum=3.126;QD=1.05;ReadPosRankSum=-0.527;SB=-6.347e-03	GT:AD:DP:GQ:PL	0/1:51,12:63:96:96,0,536
chrVII	710949	.	T	C	100.26	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.63;MQ0=3;QD=6.68;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,15:15:15:133,15,0
chrVII	711237	.	C	T	388	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=22.21;MQ0=20;QD=8.43;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:45:421,45,0
chrVII	711253	.	C	T	527	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=16;QD=11.71;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:4,41:45:60:560,60,0
chrVII	711467	.	C	T	145.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;DP=75;Dels=0.00;FS=8.633;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=19.78;MQ0=19;MQRankSum=-4.575;QD=1.93;ReadPosRankSum=-0.213;SB=-9.007e+00	GT:AD:DP:GQ:PL	0/1:30,45:75:99:175,0,512
chrVII	711525	.	T	C	371.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.945;DP=126;Dels=0.00;FS=23.500;HaplotypeScore=8.2200;MLEAC=1;MLEAF=0.500;MQ=32.57;MQ0=14;MQRankSum=0.174;QD=2.94;ReadPosRankSum=0.668;SB=-2.170e+02	GT:AD:DP:GQ:PL	0/1:86,40:126:99:401,0,1195
chrVII	711684	.	G	A	320.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DP=73;Dels=0.00;FS=39.512;HaplotypeScore=6.5221;MLEAC=1;MLEAF=0.500;MQ=20.53;MQ0=13;MQRankSum=-2.169;QD=4.38;ReadPosRankSum=0.386;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,38:73:99:350,0,338
chrVII	712228	.	T	C	257.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.524;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=21.43;MQ0=12;MQRankSum=-3.364;QD=4.28;ReadPosRankSum=1.322;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,40:60:99:287,0,275
chrVII	712249	.	C	T	747	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=23.92;MQ0=3;QD=13.83;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,53:54:81:780,81,0
chrVII	712253	.	G	A	291.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=1;MLEAF=0.500;MQ=24.85;MQ0=2;MQRankSum=-3.114;QD=4.55;ReadPosRankSum=-0.094;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,39:64:99:321,0,396
chrVII	712317	.	A	T	936	filter	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=26.07;MQ0=0;QD=10.88;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:969,102,0
chrVII	712324	.	C	T	263.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.724;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.20;MQ0=0;MQRankSum=-1.514;QD=2.66;ReadPosRankSum=0.228;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:54,45:99:99:293,0,510
chrVII	713462	.	C	T	1952	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.96;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1985,204,0
chrVII	714424	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.66;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1551,171,0
chrVII	715366	.	A	T	1855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=4.960;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.037;QD=19.73;ReadPosRankSum=1.658;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1888,207,0
chrVII	715376	.	T	G	1976	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.37;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2009,222,0
chrVII	716049	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.25;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1169,123,0
chrVII	718052	.	T	G	101.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392;DP=53;Dels=0.00;FS=51.001;HaplotypeScore=4.0593;MLEAC=1;MLEAF=0.500;MQ=57.88;MQ0=0;MQRankSum=0.550;QD=1.91;ReadPosRankSum=-2.435;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,18:53:99:131,0,558
chrVII	721916	.	A	G	1594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.124;QD=21.54;ReadPosRankSum=1.685;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1627,177,0
chrVII	722662	.	T	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1270,132,0
chrVII	724567	.	C	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.16;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1770,189,0
chrVII	724918	.	G	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.37;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1422,147,0
chrVII	729257	.	G	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.79;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1423,147,0
chrVII	729374	.	T	C	968	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.630;QD=20.60;ReadPosRankSum=1.654;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,43:47:99:1001,108,0
chrVII	730604	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.36;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1059,117,0
chrVII	732222	.	G	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1339;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.18;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1687,186,0
chrVII	733088	.	G	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.80;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1102,117,0
chrVII	734668	.	A	T	2035	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.87;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2068,219,0
chrVII	737189	.	C	A	2964	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=13.1970;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.80;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,128:130:99:2997,307,0
chrVII	738952	.	G	A	2835	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.09;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2868,294,0
chrVII	739250	.	A	C	34.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.474;DP=116;Dels=0.00;FS=9.749;HaplotypeScore=108.5797;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=0.455;QD=0.30;ReadPosRankSum=-2.902;SB=-8.097e+01	GT:AD:DP:GQ:PL	1/1:112,3:116:9:67,9,0
chrVII	739447	.	C	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.4275;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.37;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2213,228,0
chrVII	741068	.	C	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.25;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1228,129,0
chrVII	744731	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1844,195,0
chrVII	745588	.	G	A	978	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.56;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1011,108,0
chrVII	748014	.	A	G	1963	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1996,216,0
chrVII	748214	.	G	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.63;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1910,204,0
chrVII	748310	.	A	G	2031	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.4362;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.31;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2064,225,0
chrVII	748756	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.58;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1501,156,0
chrVII	748979	.	T	C	1822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=7.080;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.254;QD=19.80;ReadPosRankSum=2.209;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1855,204,0
chrVII	754648	.	C	G	1586	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1619,171,0
chrVII	754860	.	C	G	516	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.45;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:60:549,60,0
chrVII	757758	.	C	G	1515	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.44;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1548,168,0
chrVII	760810	.	A	G	2065	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.29;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2098,222,0
chrVII	763960	.	T	C	406.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.669;DP=126;Dels=0.00;FS=103.837;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=37.98;MQ0=10;MQRankSum=-0.238;QD=3.22;ReadPosRankSum=-0.691;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:79,46:126:99:436,0,1489
chrVII	764662	.	G	A	911.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;DP=158;Dels=0.00;FS=5.175;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=30.65;MQ0=2;MQRankSum=-2.438;QD=5.77;ReadPosRankSum=-0.612;SB=-4.280e+02	GT:AD:DP:GQ:PL	0/1:81,77:158:99:941,0,1321
chrVII	764689	.	A	G	659.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;DP=145;Dels=0.00;FS=3.714;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=6;MQRankSum=-0.232;QD=4.54;ReadPosRankSum=1.681;SB=-2.250e+02	GT:AD:DP:GQ:PL	0/1:82,63:145:99:689,0,1391
chrVII	764998	.	T	A	150.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;DP=111;Dels=0.00;FS=78.636;HaplotypeScore=13.3894;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=0;MQRankSum=-4.937;QD=1.35;ReadPosRankSum=0.360;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:88,23:111:99:180,0,1597
chrVII	765005	.	T	A	166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.627;DP=115;Dels=0.00;FS=81.469;HaplotypeScore=14.2215;MLEAC=1;MLEAF=0.500;MQ=50.19;MQ0=0;MQRankSum=-4.776;QD=1.44;ReadPosRankSum=0.925;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:90,24:115:99:196,0,1631
chrVII	766068	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1603,171,0
chrVII	767344	.	C	T	1794	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.36;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1827,198,0
chrVII	769748	.	A	C	2166	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.33;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2199,237,0
chrVII	771837	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.62;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1663,183,0
chrVII	773594	.	C	G	1536	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.00;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1569,174,0
chrVII	777158	.	C	T	2141	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.0029;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.30;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2174,228,0
chrVII	780648	.	A	G	1050	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.67;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1083,120,0
chrVII	780788	.	A	C	2021	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.41;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2054,228,0
chrVII	784494	.	A	G	1790	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.06;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1823,198,0
chrVII	785199	.	C	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1642,177,0
chrVII	785343	.	G	A	54.97	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=31.4644;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=1.31;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:9:87,9,0
chrVII	785665	.	A	G	1252	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.1165;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.96;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,53:57:99:1285,135,0
chrVII	785945	.	G	T	2087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.527;QD=22.68;ReadPosRankSum=0.791;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2120,219,0
chrVII	786402	.	C	T	2009	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.7833;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.78;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2042,213,0
chrVII	786491	.	T	C	1540	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.70;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1573,168,0
chrVII	786669	.	A	G	1690	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4620;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.20;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1723,192,0
chrVII	786698	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.48;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1539,165,0
chrVII	786726	.	A	G	1178	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.58;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1211,135,0
chrVII	786733	.	C	T	1062	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.31;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1095,114,0
chrVII	786858	.	A	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1200,129,0
chrVII	786976	.	C	A	1566	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.34;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1599,171,0
chrVII	787032	.	G	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.60;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1264,129,0
chrVII	787089	.	C	T	884	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.56;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:917,96,0
chrVII	787546	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.70;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1213,126,0
chrVII	787750	.	G	A	689	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.97;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:75:722,75,0
chrVII	787936	.	G	A	871	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.26;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:96:904,96,0
chrVII	788249	.	A	T	1994	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.9564;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.14;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2027,213,0
chrVII	788427	.	A	G	930	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=20.22;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:963,105,0
chrVII	788486	.	T	G	1021	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=68;Dels=0.00;FS=6.146;HaplotypeScore=61.4053;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=1.713;QD=15.01;ReadPosRankSum=2.804;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:3,64:68:99:1054,114,0
chrVII	788504	.	T	G	121.13	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=1.55;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:18:154,18,0
chrVII	788558	.	T	C	1686	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.38;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1719,189,0
chrVII	788938	.	A	G	2427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=117;Dels=0.00;FS=6.211;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.520;QD=20.74;ReadPosRankSum=2.407;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:2,114:117:99:2460,264,0
chrVII	788947	.	C	T	2433	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.92;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2466,264,0
chrVII	789015	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.21;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:68:99:1543,162,0
chrVII	789213	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.81;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1560,162,0
chrVII	789273	.	A	G	1550	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.62;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1583,174,0
chrVII	789318	.	G	A	1528	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=17.56;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1561,165,0
chrVII	789345	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=18.13;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1393,147,0
chrVII	789498	.	C	T	1084	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.07;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1117,117,0
chrVII	789789	.	T	C	1071	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=5.301;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.335;QD=17.56;ReadPosRankSum=1.619;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1104,120,0
chrVII	789939	.	C	T	1150	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.12;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1183,129,0
chrVII	789975	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.28;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1182,129,0
chrVII	790041	.	A	G	1252	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=4.337;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.185;QD=21.96;ReadPosRankSum=1.672;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1285,141,0
chrVII	790122	.	G	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.07;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1140,120,0
chrVII	790684	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.89;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1107,120,0
chrVII	790861	.	C	T	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.896;QD=20.25;ReadPosRankSum=0.259;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1815,186,0
chrVII	790909	.	T	C	1632	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.92;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1665,180,0
chrVII	790915	.	G	A	1570	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=19.15;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1603,177,0
chrVII	791092	.	A	T	1610	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.18;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1643,174,0
chrVII	791218	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.97;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1311,138,0
chrVII	791316	.	T	A	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.757;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-0.410;QD=21.63;ReadPosRankSum=1.641;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1677,174,0
chrVII	791734	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1686;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.56;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1801,195,0
chrVII	791799	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.88;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1955,204,0
chrVII	791887	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.48;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1601,165,0
chrVII	791920	.	A	G	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.891;QD=21.91;ReadPosRankSum=1.683;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1567,171,0
chrVII	792001	.	T	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.51;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1726,189,0
chrVII	792094	.	C	T	2220	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.1763;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2253,234,0
chrVII	792731	.	G	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.58;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1762,189,0
chrVII	792997	.	A	C	2342	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.90;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,94:98:99:2375,255,0
chrVII	793092	.	G	C	1954	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.8414;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.01;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1987,216,0
chrVII	793207	.	C	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.31;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1719,189,0
chrVII	793218	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.46;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1836,195,0
chrVII	793300	.	C	T	2587	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=18.09;SB=-1.673e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2620,276,0
chrVII	793301	.	A	T	2630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=144;Dels=0.00;FS=11.536;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.154;QD=18.26;ReadPosRankSum=1.595;SB=-1.647e+03	GT:AD:DP:GQ:PL	1/1:3,141:144:99:2663,276,0
chrVII	793585	.	G	C	1797	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=21.39;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1830,201,0
chrVII	793612	.	A	C	2228	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=21.02;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2261,246,0
chrVII	793703	.	A	G	1679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=0.685;QD=19.30;ReadPosRankSum=1.652;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1712,189,0
chrVII	793785	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=3.087;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.542;QD=20.79;ReadPosRankSum=2.364;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1218,135,0
chrVII	793906	.	C	T	503	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.7850;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=5.72;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:60:536,60,0
chrVII	793952	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5909;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=18.85;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,96:101:99:1937,207,0
chrVII	794027	.	C	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.64;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1678,177,0
chrVII	794041	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.83;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1595,174,0
chrVII	794286	.	T	C	2352	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.98;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2385,261,0
chrVII	794497	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=95;Dels=0.04;FS=0.000;HaplotypeScore=86.7588;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.988;QD=14.24;ReadPosRankSum=2.396;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1386,153,0
chrVII	794535	.	C	T	2123	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=17.5878;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=16.85;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,124:126:99:2156,234,0
chrVII	794605	.	A	G	2768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.122;QD=24.28;ReadPosRankSum=1.702;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2801,312,0
chrVII	794614	.	C	A	2677	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=24.34;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2710,288,0
chrVII	794620	.	C	T	2477	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.54;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2510,273,0
chrVII	794838	.	A	G	1310	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.850;QD=17.70;ReadPosRankSum=2.383;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1343,147,0
chrVII	794890	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7079;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.79;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1613,168,0
chrVII	794912	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4551;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.71;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1444,156,0
chrVII	794971	.	T	C	810	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.29;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:843,93,0
chrVII	795142	.	C	T	1501	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=23.09;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1534,162,0
chrVII	795162	.	T	G	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.726;QD=19.89;ReadPosRankSum=1.621;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1286,138,0
chrVII	795163	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.671;QD=19.10;ReadPosRankSum=1.676;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1217,132,0
chrVII	795193	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=18.83;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:71:99:1370,144,0
chrVII	795501	.	A	G	2366	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.51;SB=-1.400e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2399,261,0
chrVII	795589	.	T	C	3160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=19.0210;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=0.048;QD=21.64;ReadPosRankSum=1.684;SB=-1.811e+03	GT:AD:DP:GQ:PL	1/1:1,143:146:99:3193,351,0
chrVII	795659	.	G	C	2380	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=16.1304;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.25;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2413,258,0
chrVII	795876	.	T	G	2163	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.30;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2196,237,0
chrVII	795956	.	T	C	2544	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.1004;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.35;SB=-1.565e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2577,276,0
chrVII	796208	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.89;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1600,171,0
chrVII	796217	.	T	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.84;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1640,171,0
chrVII	796263	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.516;QD=18.77;ReadPosRankSum=1.689;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1535,168,0
chrVII	796304	.	G	A	2102	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.81;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2135,225,0
chrVII	796396	.	G	A	1978	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.04;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2011,210,0
chrVII	796413	.	G	T	1766	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8764;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=21.80;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1799,189,0
chrVII	796516	.	A	G	1299	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.95;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1332,147,0
chrVII	796731	.	G	C	1946	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=24.32;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1979,216,0
chrVII	797305	.	T	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.86;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1243,135,0
chrVII	797326	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=19.23;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1033,114,0
chrVII	797329	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.39;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1022,111,0
chrVII	797667	.	G	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.83;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1137,120,0
chrVII	797697	.	G	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.95;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1185,123,0
chrVII	797776	.	A	G	1167	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.88;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1200,126,0
chrVII	797842	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.67;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1335,147,0
chrVII	797870	.	G	C	1595	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.79;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1628,174,0
chrVII	797989	.	C	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.85;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1244,132,0
chrVII	798046	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.40;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1103,120,0
chrVII	798196	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.42;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1381,153,0
chrVII	798399	.	T	C	1219	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.66;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1252,138,0
chrVII	798481	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.310;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.231;QD=21.68;ReadPosRankSum=1.675;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1334,144,0
chrVII	799244	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=3.590;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.299;QD=18.97;ReadPosRankSum=1.678;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1247,135,0
chrVII	799451	.	C	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.40;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1595,165,0
chrVII	799595	.	A	G	1841	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.01;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1874,207,0
chrVII	799613	.	G	A	1983	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.48;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2016,213,0
chrVII	799904	.	C	T	2985	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.625;QD=22.96;ReadPosRankSum=-1.007;SB=-1.586e+03	GT:AD:DP:GQ:PL	1/1:1,128:130:99:3018,300,0
chrVII	800250	.	T	C	901	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=17.33;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:934,102,0
chrVII	800289	.	A	G	734	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.96;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:767,84,0
chrVII	801221	.	T	C	2584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.566;QD=24.85;ReadPosRankSum=1.632;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2617,282,0
chrVII	801448	.	G	A	1901	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.10;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1934,210,0
chrVII	801967	.	G	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=16.58;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1509,165,0
chrVII	801970	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=17.35;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1560,165,0
chrVII	802238	.	C	T	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.259;DP=109;Dels=0.00;FS=5.300;HaplotypeScore=19.3385;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=0.728;QD=16.86;ReadPosRankSum=-0.444;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:4,103:109:99:1871,201,0
chrVII	802512	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.56;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1494,156,0
chrVII	802550	.	A	G	1610	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.68;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1643,177,0
chrVII	802559	.	C	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.97;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1571,171,0
chrVII	804812	.	A	G	1553	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.43;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1586,177,0
chrVII	806661	.	G	A	1780	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.62;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1813,189,0
chrVII	806763	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.30;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1332,138,0
chrVII	807532	.	G	T	864	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.64;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:897,93,0
chrVII	807533	.	A	C	823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.630;QD=18.70;ReadPosRankSum=1.654;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:93:856,93,0
chrVII	807662	.	T	A	1490	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.9755;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.58;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1523,165,0
chrVII	807765	.	G	T	1066	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.48;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1099,117,0
chrVII	807767	.	A	G	990	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.103;QD=16.50;ReadPosRankSum=2.368;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1023,114,0
chrVII	807996	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1424,159,0
chrVII	808299	.	G	C	759	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:46:84:792,84,0
chrVII	808336	.	T	C	668	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=14.84;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:78:701,78,0
chrVII	808764	.	C	G	1321	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.39;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1354,147,0
chrVII	808783	.	C	T	1250	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.55;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1283,135,0
chrVII	808820	.	G	A	933	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.6591;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=17.28;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:966,102,0
chrVII	810215	.	T	C	2146	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.12;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2179,240,0
chrVII	810361	.	A	G	1936	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.00;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1969,213,0
chrVII	810523	.	T	C	879	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9657;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=15.98;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:912,99,0
chrVII	810921	.	T	C	687	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.90;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:720,78,0
chrVII	810987	.	A	G	919	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=16.41;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:952,102,0
chrVII	810990	.	C	T	934	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=14.59;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:967,105,0
chrVII	811131	.	C	T	3667.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=23.66;SB=-1.493e+03	GT:AD:DP:GQ:PL	1/1:0,154:155:99:3667,390,0
chrVII	811192	.	C	T	2225	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=27.47;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2258,234,0
chrVII	811282	.	A	C	1426	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=23.00;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1459,159,0
chrVII	811300	.	A	G	1804	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=23.43;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1837,198,0
chrVII	817391	.	T	A	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.33;MQ0=3;QD=2.65;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:3,3:6:6:47,6,0
chrVII	823328	.	A	G	89.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.403;DP=59;Dels=0.00;FS=22.333;HaplotypeScore=12.3868;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;MQRankSum=-1.906;QD=1.51;ReadPosRankSum=-2.031;SB=-6.727e+01	GT:AD:DP:GQ:PL	1/1:2,57:59:15:122,15,0
chrVII	823409	.	T	G	952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=0.866;QD=17.96;ReadPosRankSum=1.666;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:985,102,0
chrVII	823433	.	T	G	441	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.23;MQ0=0;QD=12.97;SB=-1.370e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:48:474,48,0
chrVII	823436	.	C	A	435	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=11.15;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:54:468,54,0
chrVII	823442	.	A	T	454	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;MQRankSum=0.296;QD=11.07;ReadPosRankSum=0.380;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:51:487,51,0
chrVII	823443	.	C	G	447	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=0;QD=10.90;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:54:480,54,0
chrVII	823611	.	T	G	788	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=14.87;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,49:53:93:821,93,0
chrVII	823615	.	T	C	891	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=15.63;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:924,105,0
chrVII	823633	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=68;Dels=0.00;FS=9.166;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=-0.490;QD=17.00;ReadPosRankSum=2.377;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1189,135,0
chrVII	823667	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.83;MQ0=0;QD=15.28;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1194,135,0
chrVII	823674	.	A	G	1230	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=16.62;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1263,141,0
chrVII	824079	.	C	A	1196	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=26.00;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1229,129,0
chrVII	824136	.	C	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.47;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1042,108,0
chrVII	824168	.	C	A	1004	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.36;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1037,108,0
chrVII	824887	.	C	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.9724;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.28;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1481,156,0
chrVII	825141	.	T	A	1211	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.71;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1244,129,0
chrVII	825185	.	C	G	1750	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.65;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1783,189,0
chrVII	827382	.	C	T	2398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.133;DP=104;Dels=0.00;FS=3.095;HaplotypeScore=7.5898;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.399;QD=23.06;ReadPosRankSum=-1.366;SB=-1.436e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2431,252,0
chrVII	827509	.	G	C	1812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.887;QD=21.57;ReadPosRankSum=1.098;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,81:84:99:1845,201,0
chrVII	827544	.	C	T	1595	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.69;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1628,177,0
chrVII	827791	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.23;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1243,135,0
chrVII	827996	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.74;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1511,162,0
chrVII	828031	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.577;QD=19.53;ReadPosRankSum=1.428;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1166,123,0
chrVII	828034	.	C	T	1029	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=16.08;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1062,111,0
chrVII	828517	.	A	G	1922	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.1996;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.61;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1955,213,0
chrVII	828653	.	G	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1800,186,0
chrVII	828825	.	T	C	1521	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.04;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1554,171,0
chrVII	828863	.	C	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.71;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1977,207,0
chrVII	829194	.	T	G	1619	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.81;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1652,183,0
chrVII	829589	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.78;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1491,156,0
chrVII	829617	.	G	A	1169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=53;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.102;QD=22.06;ReadPosRankSum=0.170;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1202,129,0
chrVII	829683	.	A	G	1706	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1739,189,0
chrVII	829847	.	C	T	1699	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.62;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1732,180,0
chrVII	829946	.	G	C	1497	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.34;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1530,168,0
chrVII	829998	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.408;QD=22.16;ReadPosRankSum=1.579;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1562,171,0
chrVII	830025	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.263;DP=75;Dels=0.00;FS=9.319;HaplotypeScore=9.9566;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.514;QD=20.72;ReadPosRankSum=3.096;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:4,70:75:99:1587,171,0
chrVII	830281	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.86;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1410,156,0
chrVII	830676	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.24;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2101,216,0
chrVII	830690	.	T	C	1821	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.23;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1854,207,0
chrVII	830766	.	A	C	2147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.006;QD=20.45;ReadPosRankSum=1.600;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2180,231,0
chrVII	830771	.	G	A	2198	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.55;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2231,234,0
chrVII	830787	.	C	T	2535	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.12;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2568,264,0
chrVII	830921	.	A	G	1464	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.00;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1497,159,0
chrVII	830992	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.86;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1410,150,0
chrVII	831041	.	A	G	1228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.423;QD=21.54;ReadPosRankSum=1.609;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1261,135,0
chrVII	831108	.	G	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.37;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1845,195,0
chrVII	831291	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.2903;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.00;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1781,192,0
chrVII	831330	.	C	T	1938	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.4043;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.63;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1971,207,0
chrVII	831597	.	C	T	950	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=14.39;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:983,105,0
chrVII	832073	.	C	T	1597	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.18;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1630,171,0
chrVII	832077	.	T	C	1407	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.10;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1440,156,0
chrVII	832207	.	G	A	2786	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=12.4244;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.90;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,138:140:99:2819,297,0
chrVII	832415	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.5161;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.72;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1851,192,0
chrVII	832671	.	C	T	1756	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.23;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1789,189,0
chrVII	832717	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.180;QD=19.51;ReadPosRankSum=1.682;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1399,153,0
chrVII	833104	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.52;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2150,222,0
chrVII	833158	.	A	C	987	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.184;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.1427;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=1.659;QD=20.56;ReadPosRankSum=1.511;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:86:1020,86,0
chrVII	833212	.	C	T	1533	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=17.83;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1566,162,0
chrVII	833214	.	T	C	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=92;Dels=0.00;FS=11.728;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-1.451;QD=16.11;ReadPosRankSum=2.924;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:3,89:92:99:1515,165,0
chrVII	833529	.	C	T	2406	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.49;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2439,249,0
chrVII	835894	.	T	G	2435	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.10;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2468,264,0
chrVII	836056	.	C	T	5581.01	PASS	AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.59;SB=-3.102e+03	GT:AD:DP:GQ:PL	1/1:0,227:227:99:5581,577,0
chrVII	836201	.	T	G	2371	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.25;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2404,267,0
chrVII	836320	.	G	A	4586.01	PASS	AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.89;SB=-1.442e+03	GT:AD:DP:GQ:PL	1/1:0,192:192:99:4586,478,0
chrVII	836429	.	C	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.79;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1711,183,0
chrVII	836443	.	T	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.62;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1621,171,0
chrVII	836860	.	A	G	985	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5941;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=-0.962;QD=14.28;ReadPosRankSum=1.107;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:2,66:69:99:1018,114,0
chrVII	836865	.	A	T	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.970;DP=73;Dels=0.01;FS=7.401;HaplotypeScore=11.3986;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;MQRankSum=-1.354;QD=13.62;ReadPosRankSum=1.970;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1027,108,0
chrVII	837183	.	G	A	1742	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0855;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.24;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1775,183,0
chrVII	837778	.	G	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.39;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1421,150,0
chrVII	837867	.	C	T	2007	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.30;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2040,216,0
chrVII	837897	.	A	G	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.358;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.799;QD=18.57;ReadPosRankSum=1.688;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1500,162,0
chrVII	837909	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.549;QD=16.43;ReadPosRankSum=0.972;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1380,150,0
chrVII	838011	.	T	C	2110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-1.732;QD=23.44;ReadPosRankSum=1.693;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:2143,234,0
chrVII	838145	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.00;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1485,156,0
chrVII	838381	.	G	A	2536	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.0802;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.44;SB=-1.500e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2569,273,0
chrVII	838490	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.04;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1527,165,0
chrVII	838500	.	A	C	1759	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.45;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1792,198,0
chrVII	838632	.	T	C	2262	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.3359;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.02;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2295,252,0
chrVII	838743	.	G	A	2236	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.3258;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.82;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2269,237,0
chrVII	839028	.	A	C	1672	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.690;QD=20.14;ReadPosRankSum=1.690;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1705,186,0
chrVII	839088	.	G	A	2391	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0799;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.67;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2424,249,0
chrVII	839196	.	C	T	1251	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=1.621;QD=20.18;ReadPosRankSum=1.676;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1284,135,0
chrVII	839211	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.10;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1155,123,0
chrVII	839218	.	T	C	1008	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.38;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1041,111,0
chrVII	839505	.	C	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.9692;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.81;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1865,198,0
chrVII	839538	.	T	A	1175	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.98;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1208,129,0
chrVII	839652	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.37;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:99:1008,108,0
chrVII	839712	.	G	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.70;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1421,147,0
chrVII	839880	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.00;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1458,159,0
chrVII	839892	.	A	G	1342	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=18.14;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1375,150,0
chrVII	840577	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.50;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1151,126,0
chrVII	840606	.	A	G	1064	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.73;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1097,123,0
chrVII	840622	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.01;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1258,141,0
chrVII	840681	.	G	A	2143	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.0319;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.22;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2176,234,0
chrVII	840852	.	T	G	1174	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=3.979;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.000;QD=19.25;ReadPosRankSum=-0.982;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1207,132,0
chrVII	841068	.	T	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.31;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1205,132,0
chrVII	841693	.	A	G	2333	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.87;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,98:102:99:2366,255,0
chrVII	841726	.	A	G	2022	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.51;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2055,222,0
chrVII	841814	.	C	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.48;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1449,150,0
chrVII	841859	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.84;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1471,162,0
chrVII	842090	.	G	A	1995	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2028,225,0
chrVII	842206	.	T	C	1888	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.98;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1921,210,0
chrVII	842218	.	T	C	1786	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.30;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1819,204,0
chrVII	842514	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.85;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1409,150,0
chrVII	842565	.	C	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.08;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1712,186,0
chrVII	842605	.	A	C	1959	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.81;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:1992,216,0
chrVII	842630	.	A	C	1947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=3.181;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.033;QD=18.72;ReadPosRankSum=1.699;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1980,213,0
chrVII	843110	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1961,204,0
chrVII	843390	.	G	C	2182	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.97;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,92:95:99:2215,237,0
chrVII	843717	.	T	C	1510	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.68;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1543,171,0
chrVII	843796	.	A	G	1962	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.08;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1995,216,0
chrVII	844261	.	A	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1585,171,0
chrVII	844451	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.72;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1813,198,0
chrVII	844501	.	T	C	1445	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=17.62;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1478,162,0
chrVII	844511	.	C	T	1702	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8705;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.91;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1735,180,0
chrVII	844977	.	T	C	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=0.424;QD=19.21;ReadPosRankSum=1.661;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:1,97:101:99:1973,213,0
chrVII	844986	.	C	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.5094;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.09;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1999,216,0
chrVII	845253	.	A	C	1188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-0.306;QD=23.29;ReadPosRankSum=1.664;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1221,135,0
chrVII	845298	.	G	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=52.4990;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=22.75;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1512,162,0
chrVII	845370	.	G	A	1605	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.58;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1638,171,0
chrVII	845555	.	A	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=19.93;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1368,150,0
chrVII	845584	.	T	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=17.58;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1176,129,0
chrVII	845600	.	C	T	457	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.92;MQ0=0;QD=11.15;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:51:490,51,0
chrVII	845605	.	A	G	413	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.00;MQ0=0;QD=10.32;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:48:446,48,0
chrVII	845612	.	C	T	395	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=11.62;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:45:428,45,0
chrVII	845614	.	C	A	399	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=11.08;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:45:432,45,0
chrVII	845775	.	T	C	2304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.6807;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.482;QD=22.59;ReadPosRankSum=1.696;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:1,96:102:99:2337,252,0
chrVII	845801	.	T	C	2669	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.83;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2702,294,0
chrVII	845918	.	A	C	854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=3.854;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=-1.664;QD=16.42;ReadPosRankSum=1.664;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:96:887,96,0
chrVII	846304	.	T	C	1858	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=22.12;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1891,204,0
chrVII	846377	.	G	A	1905	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=22.15;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1938,213,0
chrVII	846529	.	C	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=22.66;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1302,135,0
chrVII	846556	.	G	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=21.51;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1130,120,0
chrVII	846611	.	T	G	1060	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=18.28;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1093,120,0
chrVII	846613	.	A	C	982	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=5.643;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;MQRankSum=-0.472;QD=17.85;ReadPosRankSum=1.228;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1015,111,0
chrVII	846634	.	A	G	943	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.79;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:976,108,0
chrVII	846661	.	C	A	897	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.02;MQ0=0;QD=17.94;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:930,99,0
chrVII	846696	.	T	C	877	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.29;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:96:910,96,0
chrVII	846715	.	T	C	1219	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=16.04;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1252,132,0
chrVII	846724	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=14.60;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1201,132,0
chrVII	846740	.	A	T	1096	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=15.66;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1129,120,0
chrVII	846741	.	A	G	1074	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=29.54;MQ0=0;QD=15.34;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1107,120,0
chrVII	846746	.	C	T	1108	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=0;QD=16.06;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1141,120,0
chrVII	846750	.	G	A	1007	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=30.98;MQ0=0;QD=15.49;SB=-1.510e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1040,111,0
chrVII	846753	.	T	A	1024	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=16.25;SB=-1.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1057,111,0
chrVII	846917	.	C	T	838	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=17.83;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:871,90,0
chrVII	846930	.	T	C	896	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;QD=19.48;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:929,102,0
chrVII	846945	.	C	T	841	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=18.28;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:874,93,0
chrVII	846990	.	A	G	741	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=17.64;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:84:774,84,0
chrVII	847143	.	G	A	758	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.66;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:87:791,87,0
chrVII	847197	.	C	T	1726	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1737;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.01;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1759,186,0
chrVII	847338	.	T	A	1386	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.00;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1419,150,0
chrVII	847392	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2526;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.38;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1602,177,0
chrVII	847512	.	A	G	1141	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.02;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1174,132,0
chrVII	848688	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=26.46;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1912,207,0
chrVII	849134	.	C	G	1590	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.92;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1623,180,0
chrVII	849405	.	T	C	1389	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.77;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1422,156,0
chrVII	849423	.	C	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.42;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1113,120,0
chrVII	849504	.	A	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.29;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1306,138,0
chrVII	849524	.	G	C	1103	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=16.71;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1136,123,0
chrVII	849571	.	C	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5602;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=17.88;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1249,135,0
chrVII	849971	.	G	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=17.85;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1497,165,0
chrVII	850005	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.00;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1581,165,0
chrVII	850247	.	C	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.7001;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.49;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1877,204,0
chrVII	850524	.	T	C	1263	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.41;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1296,141,0
chrVII	850549	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=68;Dels=0.00;FS=3.571;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.525;QD=19.00;ReadPosRankSum=1.680;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,65:68:99:1325,144,0
chrVII	850641	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.15;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1450,156,0
chrVII	851563	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=5.586;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.185;QD=16.75;ReadPosRankSum=1.687;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1323,144,0
chrVII	851801	.	A	G	806	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.19;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:839,93,0
chrVII	852002	.	A	G	976	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=53;Dels=0.00;FS=6.040;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.404;QD=18.42;ReadPosRankSum=2.675;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:3,50:53:99:1009,111,0
chrVII	852158	.	G	A	909	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.66;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:942,96,0
chrVII	852265	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.90;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1201,123,0
chrVII	852722	.	G	A	1255	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;QD=19.61;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1288,135,0
chrVII	852979	.	T	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.68;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1522,156,0
chrVII	853006	.	T	A	1418	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.55;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1451,153,0
chrVII	853120	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.62;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1167,129,0
chrVII	853975	.	T	A	2291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=108;Dels=0.00;FS=7.778;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.116;QD=21.21;ReadPosRankSum=2.358;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:2,106:108:99:2324,243,0
chrVII	854209	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.69;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1790,195,0
chrVII	854830	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.40;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1604,174,0
chrVII	854897	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.03;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1395,153,0
chrVII	855067	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.20;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1199,126,0
chrVII	855087	.	A	G	1222	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.07;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1255,135,0
chrVII	855163	.	T	C	1353	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.61;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1386,147,0
chrVII	855164	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.23;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1368,147,0
chrVII	866222	.	T	A	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=6.931;HaplotypeScore=7.8400;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.281;QD=17.81;ReadPosRankSum=1.639;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1351,144,0
chrVII	866300	.	T	A	1843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.208;QD=22.48;ReadPosRankSum=1.686;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1876,198,0
chrVII	867056	.	A	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1110,123,0
chrVII	867128	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.560;QD=22.18;ReadPosRankSum=1.626;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1497,165,0
chrVII	868268	.	G	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.2685;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=23.02;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1253,132,0
chrVII	868409	.	C	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.09;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1557,165,0
chrVII	868460	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.04;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1653,177,0
chrVII	868485	.	G	A	1728	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.58;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1761,186,0
chrVII	869330	.	A	G	1635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.521;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.9234;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.338;QD=19.70;ReadPosRankSum=1.690;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1668,183,0
chrVII	869564	.	T	C	1611	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.20;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1644,180,0
chrVII	870131	.	C	T	201.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=181;Dels=0.01;FS=11.951;HaplotypeScore=15.6972;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.040;QD=1.11;ReadPosRankSum=-3.047;SB=2.97	GT:AD:DP:GQ:PL	1/1:165,13:180:24:234,24,0
chrVII	870453	.	C	T	2783	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.81;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2816,294,0
chrVII	870646	.	C	T	1775	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.88;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1808,195,0
chrVII	870793	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.78;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1457,153,0
chrVII	870916	.	A	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.80;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1406,153,0
chrVII	871006	.	C	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.67;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1115,117,0
chrVII	871036	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1111,117,0
chrVII	871517	.	T	C	1441	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.02;FS=3.815;HaplotypeScore=3.5538;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.039;QD=21.83;ReadPosRankSum=1.679;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1474,156,0
chrVII	872246	.	C	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.28;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:76:99:1574,168,0
chrVII	873382	.	C	T	1203	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=20.39;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1236,126,0
chrVII	873389	.	T	C	1250	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;DP=65;Dels=0.00;FS=6.071;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=-0.297;QD=19.23;ReadPosRankSum=2.736;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:99:1283,138,0
chrVII	873392	.	G	A	1290	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=19.55;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1323,144,0
chrVII	873502	.	C	T	623	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=15.57;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:72:656,72,0
chrVII	873790	.	C	T	2005	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.53;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2038,216,0
chrVII	873895	.	G	A	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=56;Dels=0.00;FS=3.502;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.237;QD=23.21;ReadPosRankSum=1.547;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1333,138,0
chrVII	874466	.	A	T	1364	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.73;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1397,147,0
chrVII	874585	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.86;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1205,123,0
chrVII	874608	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.13;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1364,141,0
chrVII	874653	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.25;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1635,168,0
chrVII	874790	.	A	T	2041	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2074,219,0
chrVII	874862	.	A	G	2174	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.13;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2207,237,0
chrVII	875149	.	A	G	2506	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.06;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2539,276,0
chrVII	875194	.	C	T	2666	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.9747;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.99;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2699,285,0
chrVII	875338	.	C	T	2108	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.69;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2141,225,0
chrVII	875367	.	T	C	1842	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.644;QD=23.32;ReadPosRankSum=1.688;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1875,201,0
chrVII	875517	.	T	C	1812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=81;Dels=0.00;FS=7.549;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.616;QD=22.37;ReadPosRankSum=2.355;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:2,76:81:99:1845,204,0
chrVII	875660	.	T	C	3744.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.83;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,163:164:99:3744,411,0
chrVII	875675	.	T	C	3295.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=158;Dels=0.00;FS=2.384;HaplotypeScore=7.5008;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;MQRankSum=1.553;QD=20.85;ReadPosRankSum=3.100;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:4,152:158:99:3295,366,0
chrVII	875843	.	T	G	2324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.155;DP=113;Dels=0.00;FS=3.590;HaplotypeScore=4.4892;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.516;QD=20.57;ReadPosRankSum=1.516;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2357,258,0
chrVII	875845	.	A	T	2374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.315;DP=110;Dels=0.00;FS=3.786;HaplotypeScore=3.7006;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=1.417;QD=21.58;ReadPosRankSum=1.291;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2407,252,0
chrVII	876033	.	G	A	2189	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.46;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2222,228,0
chrVII	876057	.	T	C	2164	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.81;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2197,240,0
chrVII	876081	.	G	A	2256	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.79;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2289,237,0
chrVII	876244	.	A	G	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-1.642;QD=23.32;ReadPosRankSum=1.642;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1829,198,0
chrVII	876351	.	T	C	769	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.88;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:802,87,0
chrVII	876387	.	T	C	1157	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.43;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1190,129,0
chrVII	876560	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.27;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1249,129,0
chrVII	876569	.	G	A	1037	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=18.85;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1070,114,0
chrVII	876711	.	T	C	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.404;QD=21.82;ReadPosRankSum=1.675;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1342,150,0
chrVII	876825	.	C	T	1198	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.60;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1231,129,0
chrVII	876879	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1158;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.14;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1398,150,0
chrVII	876915	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=63;Dels=0.00;FS=6.111;HaplotypeScore=4.7185;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=0.820;QD=21.06;ReadPosRankSum=2.788;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:3,59:63:99:1360,144,0
chrVII	876960	.	T	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.03;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1241,132,0
chrVII	876965	.	T	C	1263	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.57;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1296,141,0
chrVII	876985	.	G	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.66;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1526,162,0
chrVII	877148	.	A	G	1261	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=61;Dels=0.00;FS=10.189;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.407;QD=20.67;ReadPosRankSum=2.680;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:3,57:61:99:1294,138,0
chrVII	878070	.	G	A	1660	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.71;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1693,174,0
chrVII	878159	.	C	T	1896	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.06;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,103:105:99:1929,216,0
chrVII	878298	.	G	A	2514	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.28;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2547,270,0
chrVII	878834	.	T	C	240	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=12.00;SB=-1.518e-02	GT:AD:DP:GQ:PL	1/1:0,20:20:30:273,30,0
chrVII	878835	.	A	T	244	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=-0.694;QD=12.20;ReadPosRankSum=1.561;SB=-1.518e-02	GT:AD:DP:GQ:PL	1/1:1,19:20:30:277,30,0
chrVII	878949	.	T	C	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.1066;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=-1.461;QD=16.70;ReadPosRankSum=1.702;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:1,114:115:99:1953,213,0
chrVII	878997	.	A	C	2622	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=26.48;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2655,282,0
chrVII	879079	.	A	G	1774	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=22.46;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1807,198,0
chrVII	879230	.	C	T	3113	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=21.62;SB=-1.504e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3146,327,0
chrVII	879247	.	T	C	2326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=3.455;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.445;QD=20.40;ReadPosRankSum=1.701;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:1,112:114:99:2359,267,0
chrVII	879283	.	A	G	2126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=114;Dels=0.00;FS=2.804;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=-0.708;QD=18.65;ReadPosRankSum=2.319;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:2,111:114:99:2159,237,0
chrVII	879321	.	A	C	2099	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.99;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2132,237,0
chrVII	879340	.	C	T	1936	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.93;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1969,213,0
chrVII	879396	.	A	T	1633	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=90;Dels=0.00;FS=6.170;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.042;QD=18.14;ReadPosRankSum=2.339;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1666,180,0
chrVII	879438	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.64;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1684,183,0
chrVII	879516	.	C	T	2137	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.03;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2170,228,0
chrVII	879875	.	T	C	867	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.27;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:900,99,0
chrVII	880200	.	C	A	1010	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.95;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1043,111,0
chrVII	880304	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=4.491;HaplotypeScore=3.3832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.885;QD=24.47;ReadPosRankSum=1.578;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1134,123,0
chrVII	880473	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.29;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1393,147,0
chrVII	881583	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.58;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1004,105,0
chrVII	881739	.	A	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.14;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1626,171,0
chrVII	881946	.	T	C	1896	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.12;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1929,210,0
chrVII	882457	.	G	A	1530	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=19.87;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1563,159,0
chrVII	882458	.	G	A	1552	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.69;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1585,162,0
chrVII	882628	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=16.08;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1062,111,0
chrVII	882635	.	C	T	1046	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.09;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1079,111,0
chrVII	882679	.	G	C	1594	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.44;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1627,177,0
chrVII	884168	.	C	G	2983	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.77;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,136:137:99:3016,330,0
chrVII	884340	.	C	A	1662	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.77;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1695,180,0
chrVII	884363	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.92;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1937,207,0
chrVII	885001	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=5.2322;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=18.33;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1738,183,0
chrVII	885030	.	G	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.73;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:1859,195,0
chrVII	885165	.	C	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.37;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1107,117,0
chrVII	885746	.	G	A	195.01	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=3.10;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:27:228,27,0
chrVII	885775	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.29;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:99:1289,141,0
chrVII	886023	.	T	C	1518	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.38;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1551,168,0
chrVII	886106	.	G	A	945	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.54;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:978,102,0
chrVII	886588	.	T	G	1628	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.87;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1661,177,0
chrVII	887135	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.79;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1389,150,0
chrVII	887192	.	T	C	852	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.4992;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.81;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:885,96,0
chrVII	887698	.	G	T	936	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.77;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:969,105,0
chrVII	888005	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.14;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1238,132,0
chrVII	888080	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=19.31;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1037,111,0
chrVII	888101	.	T	C	911	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=51.2249;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=16.56;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:944,105,0
chrVII	888102	.	T	C	938	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=51.2249;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=17.37;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:971,105,0
chrVII	888165	.	A	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=21.67;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1225,129,0
chrVII	888247	.	T	A	1948	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.14;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1981,207,0
chrVII	888345	.	A	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=20.39;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1195,126,0
chrVII	888451	.	G	T	759	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=19.97;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:87:792,87,0
chrVII	888453	.	G	A	777	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.45;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:810,84,0
chrVII	888479	.	A	C	603	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=16.30;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:69:636,69,0
chrVII	888499	.	G	A	381	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=11.55;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:42:414,42,0
chrVII	888555	.	T	A	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=6.9575;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=2.433;QD=1.34;ReadPosRankSum=-0.454;SB=-6.076e+01	GT:AD:DP:GQ:PL	1/1:14,6:20:6:58,6,0
chrVII	888567	.	A	T	344	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.86;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:45:377,45,0
chrVII	888588	.	C	T	455	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=12.64;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:51:488,51,0
chrVII	888591	.	G	T	466	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;QD=12.94;SB=-1.460e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:51:499,51,0
chrVII	888709	.	C	T	962	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.04;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:995,105,0
chrVII	888716	.	A	G	924	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.12;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:957,102,0
chrVII	888980	.	G	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=20.38;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1215,129,0
chrVII	889046	.	T	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.97;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1351,138,0
chrVII	890309	.	C	T	2313	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.68;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2346,246,0
chrVII	890801	.	G	C	2194	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.16;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2227,246,0
chrVII	890861	.	A	G	1824	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.27;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1857,207,0
chrVII	891078	.	C	T	1699	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.53;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1732,183,0
chrVII	891149	.	G	A	1863	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.21;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1896,201,0
chrVII	891221	.	A	G	2411	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.53;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2444,261,0
chrVII	891371	.	T	C	2877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.637;QD=21.15;ReadPosRankSum=1.707;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:1,135:136:99:2910,306,0
chrVII	891383	.	C	T	2788	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.45;SB=-1.462e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:2821,294,0
chrVII	891431	.	A	C	1357	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=17.40;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1390,156,0
chrVII	891533	.	A	T	2017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.304;QD=20.79;ReadPosRankSum=1.696;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2050,213,0
chrVII	892189	.	T	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.65;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1233,135,0
chrVII	892435	.	A	T	4073.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=168;Dels=0.00;FS=4.303;HaplotypeScore=6.7131;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.944;QD=24.24;ReadPosRankSum=1.670;SB=-1.701e+03	GT:AD:DP:GQ:PL	1/1:1,167:168:99:4073,424,0
chrVII	893054	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.75;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1299,135,0
chrVII	893214	.	G	T	1393	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.11;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1426,150,0
chrVII	893319	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.52;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1651,174,0
chrVII	893535	.	A	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.42;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1341,144,0
chrVII	893550	.	C	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.96;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1303,138,0
chrVII	893850	.	T	C	1856	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.048;QD=24.42;ReadPosRankSum=1.687;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1889,204,0
chrVII	894066	.	A	T	1133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.543;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.999;QD=21.79;ReadPosRankSum=1.666;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1166,123,0
chrVII	894078	.	T	A	1018	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.36;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1051,114,0
chrVII	894109	.	T	C	926	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.54;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:959,105,0
chrVII	894312	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.66;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1483,153,0
chrVII	894371	.	G	A	1210	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.0118;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.84;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1243,129,0
chrVII	894432	.	C	T	932	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=17.26;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:965,105,0
chrVII	894512	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=16.94;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1185,135,0
chrVII	895001	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4600;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.77;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1591,165,0
chrVII	895006	.	G	C	1583	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.56;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1616,174,0
chrVII	895091	.	G	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=17.17;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1338,138,0
chrVII	895096	.	A	G	1145	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=15.47;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1178,129,0
chrVII	895227	.	A	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.98;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1044,111,0
chrVII	895261	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.38;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1337,147,0
chrVII	895450	.	C	T	2114	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3604;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=25.78;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2147,222,0
chrVII	895768	.	G	A	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1814;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.516;QD=23.12;ReadPosRankSum=-1.106;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2229,231,0
chrVII	896035	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.32;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1675,186,0
chrVII	896532	.	G	A	2228	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.21;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2261,237,0
chrVII	897236	.	G	A	2933	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.8844;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.65;SB=-1.668e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:2966,321,0
chrVII	897311	.	A	G	3087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=122;Dels=0.00;FS=12.834;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.047;QD=25.30;ReadPosRankSum=2.368;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:2,119:122:99:3120,336,0
chrVII	897795	.	G	A	2202	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.9064;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.68;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2235,225,0
chrVII	897834	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.17;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1762,186,0
chrVII	897873	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.38;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1680,180,0
chrVII	898059	.	G	A	2860	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5939;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.88;SB=-1.619e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2893,303,0
chrVII	898083	.	T	C	2112	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.31;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2145,237,0
chrVII	898325	.	A	G	2916	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7817;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.26;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2949,324,0
chrVII	898435	.	T	C	2401	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.09;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2434,264,0
chrVII	898998	.	A	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.68;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1854,201,0
chrVII	899421	.	T	C	1710	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.92;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1743,192,0
chrVII	899490	.	T	C	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.029;QD=19.59;ReadPosRankSum=1.682;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1404,153,0
chrVII	899896	.	G	A	2620	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.59;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2653,276,0
chrVII	900087	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.2589;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.06;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1638,174,0
chrVII	900146	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.96;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1647,180,0
chrVII	900405	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.84;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1617,174,0
chrVII	900753	.	C	A	1749	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.58;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1782,189,0
chrVII	901165	.	G	A	2194	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.09;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2227,243,0
chrVII	901215	.	C	A	2582	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.7987;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.83;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,101:104:99:2615,276,0
chrVII	901763	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=4.771;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.732;QD=19.44;ReadPosRankSum=1.686;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1491,165,0
chrVII	902028	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.03;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1660,177,0
chrVII	902287	.	C	T	1709	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.0087;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.64;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1742,183,0
chrVII	902358	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2213;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.41;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1960,204,0
chrVII	902387	.	A	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.88;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1718,186,0
chrVII	902486	.	C	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.72;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1260,132,0
chrVII	902502	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.87;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1139,123,0
chrVII	902791	.	G	A	2033	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.84;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2066,213,0
chrVII	902985	.	A	G	1622	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1655,183,0
chrVII	903446	.	A	T	1696	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=7.930;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.383;QD=22.92;ReadPosRankSum=2.383;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1729,180,0
chrVII	904076	.	T	C	1090	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.693;QD=21.80;ReadPosRankSum=1.663;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1123,120,0
chrVII	904249	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.69;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1549,162,0
chrVII	905027	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.98;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1657,177,0
chrVII	905400	.	C	T	1619	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.88;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1652,171,0
chrVII	906149	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1399,153,0
chrVII	906737	.	A	G	1473	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.75;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1506,162,0
chrVII	906829	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.77;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1466,162,0
chrVII	906984	.	C	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.7302;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.71;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2213,231,0
chrVII	907178	.	A	G	1641	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.31;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1674,183,0
chrVII	907942	.	C	G	1494	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.8918;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=16.42;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1527,165,0
chrVII	908105	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=5.5050;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.412;QD=18.14;ReadPosRankSum=2.293;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1176,129,0
chrVII	908207	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.285;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.1181;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.676;QD=22.56;ReadPosRankSum=1.453;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1432,150,0
chrVII	908376	.	A	G	1867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.377;QD=20.29;ReadPosRankSum=1.694;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1900,210,0
chrVII	908426	.	C	T	1695	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.84;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1728,180,0
chrVII	908432	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=15.59;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1608,171,0
chrVII	908492	.	C	A	2637	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.44;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2670,294,0
chrVII	908765	.	C	T	2864	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.21;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2897,292,0
chrVII	909179	.	G	A	2823	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=119.5702;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.05;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2856,306,0
chrVII	909227	.	A	G	2077	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=20.17;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2110,234,0
chrVII	909569	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.27;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1458,156,0
chrVII	909620	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=-0.558;QD=20.03;ReadPosRankSum=0.440;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1235,119,0
chrVII	909701	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.29;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1027,108,0
chrVII	909722	.	A	G	1038	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=21.18;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1071,114,0
chrVII	909914	.	G	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=19.43;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1646,174,0
chrVII	909923	.	C	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.00;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1513,159,0
chrVII	910249	.	G	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=20.60;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1866,201,0
chrVII	910292	.	T	C	1635	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=23.03;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1668,180,0
chrVII	910327	.	C	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.76;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1649,174,0
chrVII	910338	.	T	C	1391	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.80;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1424,156,0
chrVII	910494	.	T	G	2057	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.20;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2090,225,0
chrVII	910560	.	A	T	2264	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.98;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2297,246,0
chrVII	910572	.	A	G	2046	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.54;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2079,228,0
chrVII	910638	.	G	A	898	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.61;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:931,96,0
chrVII	910647	.	T	C	924	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.48;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:957,102,0
chrVII	910992	.	A	G	1596	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.48;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1629,177,0
chrVII	911134	.	C	T	899	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.73;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:932,99,0
chrVII	911141	.	C	T	792	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=16.85;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:825,87,0
chrVII	911221	.	G	A	934	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.31;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:967,108,0
chrVII	911377	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.9308;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.03;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1526,168,0
chrVII	911580	.	C	T	618	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=17.17;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:69:651,69,0
chrVII	911599	.	T	C	598	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.12;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:69:631,69,0
chrVII	911807	.	C	T	1621	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=20.52;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1654,174,0
chrVII	911822	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.61;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1517,165,0
chrVII	911857	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.28;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1501,153,0
chrVII	911978	.	G	A	1215	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.37;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1248,129,0
chrVII	912148	.	A	G	979	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.40;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1012,111,0
chrVII	912555	.	C	G	2026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=6.488;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;MQRankSum=0.636;QD=20.26;ReadPosRankSum=-0.106;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:1,97:100:99:2059,231,0
chrVII	912560	.	C	T	2111	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.54;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2144,222,0
chrVII	912779	.	T	C	3032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=12.347;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-0.272;QD=22.97;ReadPosRankSum=2.412;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:2,129:132:99:3065,327,0
chrVII	913000	.	T	C	1252	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=4.046;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;MQRankSum=-0.892;QD=18.97;ReadPosRankSum=1.680;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1285,141,0
chrVII	913057	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=16.47;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1186,132,0
chrVII	913063	.	C	T	1281	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=17.79;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1314,135,0
chrVII	913078	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.21;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1297,135,0
chrVII	913222	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.02;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1709,183,0
chrVII	913309	.	G	A	1391	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.16;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1424,156,0
chrVII	913551	.	G	A	2134	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.25;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2167,225,0
chrVII	913794	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.76;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1543,162,0
chrVII	913905	.	T	C	1568	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1199;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.51;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1601,174,0
chrVII	914107	.	C	T	1346	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.37;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1379,144,0
chrVII	914517	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3779;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=16.61;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1694,177,0
chrVII	914538	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=16.55;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1390,147,0
chrVII	914816	.	C	G	2194	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.38;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2227,240,0
chrVII	915330	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.008;QD=20.56;ReadPosRankSum=1.681;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1431,159,0
chrVII	915876	.	A	G	1454	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.70;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1487,162,0
chrVII	916305	.	T	C	839	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.64;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:96:872,96,0
chrVII	916324	.	T	C	913	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=5.482;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=0.817;QD=17.23;ReadPosRankSum=1.667;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:946,102,0
chrVII	916389	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.13;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1449,156,0
chrVII	916476	.	C	T	1280	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.69;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1313,141,0
chrVII	916672	.	C	T	1703	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.71;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1736,183,0
chrVII	916853	.	T	C	3065	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.89;SB=-1.669e+03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:3098,345,0
chrVII	916953	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=23.24;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1660,177,0
chrVII	917004	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.57;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1545,162,0
chrVII	917241	.	C	T	1814	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.6268;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.67;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1847,195,0
chrVII	917280	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=23.25;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1823,189,0
chrVII	917290	.	G	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.57;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1658,177,0
chrVII	917370	.	C	T	801	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=15.40;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:87:834,87,0
chrVII	917381	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.06;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:954,102,0
chrVII	917454	.	A	G	1084	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.21;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1117,120,0
chrVII	917483	.	C	T	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=5.873;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.299;QD=19.31;ReadPosRankSum=0.956;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1153,120,0
chrVII	917548	.	C	T	2047	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2080,219,0
chrVII	917785	.	G	A	1681	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.68;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1714,180,0
chrVII	917879	.	T	C	2080	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.61;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2113,225,0
chrVII	918026	.	C	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.07;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1177,126,0
chrVII	918497	.	A	C	1426	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.76;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1459,159,0
chrVII	918518	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.93;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1249,132,0
chrVII	918731	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.92;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2101,219,0
chrVII	918781	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.50;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1366,147,0
chrVII	918808	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.51;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1451,162,0
chrVII	918846	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.53;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1362,147,0
chrVII	918902	.	A	G	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=8.195;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.702;QD=24.83;ReadPosRankSum=2.375;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1672,177,0
chrVII	918971	.	T	C	1946	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;DP=94;Dels=0.00;FS=6.066;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.043;QD=20.70;ReadPosRankSum=2.904;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:3,91:94:99:1979,216,0
chrVII	919258	.	T	C	2560	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.38;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2593,288,0
chrVII	919382	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.04;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:928,102,0
chrVII	919513	.	G	A	2374	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.61;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2407,252,0
chrVII	919531	.	G	A	2296	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.66;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2329,243,0
chrVII	919561	.	A	T	2494	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.47;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2527,258,0
chrVII	919661	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.18;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1364,141,0
chrVII	920003	.	T	C	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.680;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.379;QD=21.35;ReadPosRankSum=1.591;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1079,120,0
chrVII	920047	.	T	C	1044	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=18.64;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1077,114,0
chrVII	920060	.	G	A	772	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=13.54;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:87:805,87,0
chrVII	920114	.	T	A	368	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=96.3507;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=3.57;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:42:401,42,0
chrVII	920150	.	C	G	768	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.01;MQ0=0;QD=6.74;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:87:801,87,0
chrVII	920237	.	C	T	652	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=11.85;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:72:685,72,0
chrVII	920238	.	A	G	627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-0.787;QD=11.40;ReadPosRankSum=1.326;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:72:660,72,0
chrVII	920740	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1743,195,0
chrVII	920955	.	G	A	1637	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.02;FS=0.000;HaplotypeScore=20.1139;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=16.88;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1670,180,0
chrVII	920988	.	C	A	1691	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.68;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1724,180,0
chrVII	921308	.	C	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.22;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1206,126,0
chrVII	921947	.	G	A	2001	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.82;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2034,219,0
chrVII	923476	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.301;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.495;QD=20.99;ReadPosRankSum=1.683;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1523,165,0
chrVII	927341	.	T	A	2061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=96;Dels=0.00;FS=3.590;HaplotypeScore=6.6300;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.660;QD=21.47;ReadPosRankSum=1.660;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2094,216,0
chrVII	928733	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.14;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1162,126,0
chrVII	928933	.	G	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.72;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1488,156,0
chrVII	929033	.	A	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1155,126,0
chrVII	929493	.	A	G	1133	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.98;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1166,129,0
chrVII	930037	.	G	A	2711	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.78;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2744,285,0
chrVII	930575	.	C	T	2312	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.83;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2345,255,0
chrVII	930925	.	T	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=23.34;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1387,147,0
chrVII	931037	.	C	T	1550	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=24.60;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1583,165,0
chrVII	931796	.	T	A	1306	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=3;MQRankSum=-0.563;QD=15.19;ReadPosRankSum=1.690;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:4,82:86:99:1339,141,0
chrVII	931830	.	A	G	631	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=10.18;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:72:664,72,0
chrVII	931839	.	T	C	447	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=28.55;MQ0=0;QD=7.98;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:54:480,54,0
chrVII	931934	.	C	G	1701	filter	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=6;QD=22.09;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:6,70:77:99:1734,189,0
chrVII	932498	.	T	C	2123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=3.297;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.074;QD=22.59;ReadPosRankSum=1.658;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2156,234,0
chrVII	932600	.	A	C	1198	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.31;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1231,135,0
chrVII	932852	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.83;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1380,144,0
chrVII	933869	.	G	T	2848	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.8702;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.60;SB=-1.319e+03	GT:AD:DP:GQ:PL	1/1:0,124:126:99:2881,309,0
chrVII	934463	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.77;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1731,183,0
chrVII	934700	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1494,156,0
chrVII	934919	.	C	T	1812	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.10;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1845,195,0
chrVII	935000	.	A	G	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.185;QD=20.83;ReadPosRankSum=1.687;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1616,177,0
chrVII	935765	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.98;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2101,216,0
chrVII	935861	.	T	A	2026	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.51;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2059,219,0
chrVII	935993	.	A	G	4197.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=165;Dels=0.00;FS=4.440;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.373;QD=25.44;ReadPosRankSum=1.690;SB=-1.604e+03	GT:AD:DP:GQ:PL	1/1:1,163:165:99:4197,450,0
chrVII	936413	.	G	C	1194	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.71;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1227,138,0
chrVII	936948	.	G	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.06;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1520,165,0
chrVII	937029	.	C	T	2306	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.8756;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.96;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2339,252,0
chrVII	937072	.	G	A	2731	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=12.6608;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.14;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2764,291,0
chrVII	937221	.	T	C	1249	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.83;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1282,138,0
chrVII	937295	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.73;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1651,177,0
chrVII	937376	.	T	G	2463	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.60;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2496,270,0
chrVII	937670	.	G	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.25;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1572,174,0
chrVII	937718	.	G	C	1711	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.87;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1744,192,0
chrVII	937780	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=7.360;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=0.107;QD=21.69;ReadPosRankSum=2.328;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1790,192,0
chrVII	937797	.	G	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=22.21;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1721,183,0
chrVII	937835	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.83;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1389,150,0
chrVII	937838	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.96;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1398,150,0
chrVII	937863	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.110;QD=17.49;ReadPosRankSum=1.688;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1415,150,0
chrVII	938120	.	T	C	1835	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.11;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1868,198,0
chrVII	938306	.	C	T	2573	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2993;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.61;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2606,273,0
chrVII	938364	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.63;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1725,189,0
chrVII	938447	.	T	C	1804	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.98;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1837,198,0
chrVII	938528	.	C	A	1864	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.22;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1897,201,0
chrVII	938768	.	A	C	1723	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.51;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1756,192,0
chrVII	938789	.	T	C	1655	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.43;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1688,183,0
chrVII	938924	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.29;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1438,150,0
chrVII	939184	.	C	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.73;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1710,183,0
chrVII	939208	.	G	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=17.47;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1221,126,0
chrVII	939212	.	C	A	1001	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=14.72;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1034,111,0
chrVII	939290	.	T	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=20.41;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1339,147,0
chrVII	939318	.	A	G	2203	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.03;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2236,240,0
chrVII	939675	.	A	G	2346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.123;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.5678;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=1.488;QD=21.33;ReadPosRankSum=2.405;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:2,108:110:99:2379,258,0
chrVII	939713	.	A	G	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;DP=119;Dels=0.00;FS=11.445;HaplotypeScore=100.3189;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=-2.084;QD=14.18;ReadPosRankSum=3.767;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:5,113:119:99:1720,192,0
chrVII	939718	.	G	A	1865	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=16.22;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:1898,195,0
chrVII	939851	.	A	G	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=9.652;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.533;QD=21.79;ReadPosRankSum=2.389;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1798,198,0
chrVII	940048	.	G	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=20.98;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1816,195,0
chrVII	940082	.	C	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.8628;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=18.43;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1563,162,0
chrVII	940087	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=17.95;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1541,171,0
chrVII	940459	.	G	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.8116;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.26;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1940,204,0
chrVII	941028	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1107,117,0
chrVII	941967	.	G	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2231;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.19;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1401,150,0
chrVII	942390	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.83;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1539,171,0
chrVII	942464	.	C	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.08;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1601,171,0
chrVII	942692	.	T	C	3170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=147;Dels=0.00;FS=2.589;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.173;QD=21.56;ReadPosRankSum=2.924;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:3,143:147:99:3203,351,0
chrVII	942719	.	C	T	3121	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.95;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3154,327,0
chrVII	942771	.	C	T	2268	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.20;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2301,249,0
chrVII	943288	.	T	C	1885	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1918,204,0
chrVII	943619	.	T	C	2439	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=115;Dels=0.00;FS=6.773;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.824;QD=21.21;ReadPosRankSum=2.407;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:2,113:115:99:2472,273,0
chrVII	943671	.	C	T	2731	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8252;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;QD=23.54;SB=-1.396e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2764,291,0
chrVII	943708	.	G	A	2091	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.7425;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.91;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2124,222,0
chrVII	943786	.	T	C	2139	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=22.28;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2172,240,0
chrVII	943810	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=17.96;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2045,216,0
chrVII	943813	.	C	T	2006	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=18.75;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2039,213,0
chrVII	943831	.	G	T	1804	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=17.86;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1837,189,0
chrVII	943873	.	T	C	1686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=103;Dels=0.00;FS=2.873;HaplotypeScore=5.1491;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;MQRankSum=-0.657;QD=16.37;ReadPosRankSum=2.402;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:2,101:103:99:1719,192,0
chrVII	944106	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.62;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1390,144,0
chrVII	944183	.	T	C	1750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=4.685;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.797;QD=17.33;ReadPosRankSum=1.697;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:1,99:101:99:1783,192,0
chrVII	944287	.	T	C	1522	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.29;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1555,165,0
chrVII	944466	.	C	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.82;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1448,153,0
chrVII	944554	.	T	C	1348	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.40;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1381,153,0
chrVII	944684	.	G	A	900	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=15.79;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:933,102,0
chrVII	944981	.	T	A	942	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;DP=48;Dels=0.00;FS=11.417;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.184;QD=19.62;ReadPosRankSum=2.187;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:975,102,0
chrVII	945026	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.17;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1496,162,0
chrVII	945166	.	C	T	1723	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1756,186,0
chrVII	945207	.	G	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.22;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1194,129,0
chrVII	945624	.	C	G	1423	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.56;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1456,159,0
chrVII	945669	.	C	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1255,135,0
chrVII	945714	.	C	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.07;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:61:99:1257,135,0
chrVII	945978	.	C	T	1760	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.46;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1793,186,0
chrVII	946125	.	A	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.69;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1136,123,0
chrVII	946206	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.93;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:691,78,0
chrVII	946366	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.01;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=17.82;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1708,177,0
chrVII	946369	.	G	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=16.44;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1611,171,0
chrVII	946407	.	A	T	1891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.085;DP=108;Dels=0.00;FS=6.563;HaplotypeScore=17.2963;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.513;QD=17.51;ReadPosRankSum=2.404;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:2,106:108:99:1924,210,0
chrVII	946664	.	G	A	3069	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=23.79;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3102,336,0
chrVII	946974	.	A	G	3768.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=10.2564;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.16;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,168:170:99:3768,414,0
chrVII	947080	.	T	C	3331.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.08;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:0,156:158:99:3331,360,0
chrVII	947127	.	G	A	206.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.348;DP=105;Dels=0.00;FS=9.089;HaplotypeScore=82.3248;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.059;QD=1.96;ReadPosRankSum=-1.331;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:4,101:105:24:239,24,0
chrVII	947252	.	C	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.2207;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.41;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1768,183,0
chrVII	947600	.	A	G	2163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.297;HaplotypeScore=6.7259;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.369;QD=22.77;ReadPosRankSum=1.695;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,93:95:99:2196,243,0
chrVII	947884	.	C	A	2508	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.44;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2541,267,0
chrVII	948145	.	G	A	2385	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=15.4206;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.04;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2418,258,0
chrVII	948202	.	T	G	2689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.332;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.269;QD=21.34;ReadPosRankSum=0.443;SB=-1.624e+03	GT:AD:DP:GQ:PL	1/1:2,123:126:99:2722,294,0
chrVII	948253	.	C	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.60;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1740,186,0
chrVII	948319	.	T	C	1655	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.19;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1688,183,0
chrVII	949014	.	T	C	1442	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.49;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1475,159,0
chrVII	949072	.	C	T	804	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=13.86;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,55:58:90:837,90,0
chrVII	949090	.	C	T	648	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=14.09;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,45:46:72:681,72,0
chrVII	949165	.	T	A	499	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=18.48;SB=-6.101e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:57:532,57,0
chrVII	949264	.	T	C	59.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;DP=18;Dels=0.00;FS=26.454;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=1.588;QD=3.29;ReadPosRankSum=2.165;SB=-2.177e-01	GT:AD:DP:GQ:PL	0/1:9,8:18:10:89,0,10
chrVII	949572	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.43;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1218,132,0
chrVII	949577	.	C	G	1144	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.75;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1177,129,0
chrVII	949679	.	T	C	1641	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1674,180,0
chrVII	949790	.	T	C	925	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=12.85;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:958,105,0
chrVII	949940	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.74;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1642,180,0
chrVII	950081	.	C	T	1014	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.13;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1047,111,0
chrVII	950132	.	A	G	1566	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.03;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1599,171,0
chrVII	950210	.	C	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.10;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1263,135,0
chrVII	950699	.	C	A	2444	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.42;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2477,255,0
chrVII	950759	.	G	A	2737	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.22;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2770,285,0
chrVII	950926	.	G	A	2169	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.26;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2202,234,0
chrVII	950936	.	G	A	2502	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.95;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2535,267,0
chrVII	951520	.	T	C	1665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=0.678;QD=24.13;ReadPosRankSum=1.682;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1698,183,0
chrVII	951635	.	G	A	1145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=1.039;QD=19.08;ReadPosRankSum=1.444;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1178,129,0
chrVII	951655	.	C	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=15.90;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1257,132,0
chrVII	951659	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=16.97;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1340,144,0
chrVII	951675	.	A	G	1117	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;QD=15.09;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1150,126,0
chrVII	951690	.	G	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=15.80;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1360,144,0
chrVII	951706	.	G	A	1387	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=14.76;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1420,150,0
chrVII	951726	.	C	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=33.89;MQ0=0;QD=12.10;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1291,132,0
chrVII	951733	.	A	T	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.336;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;MQRankSum=-0.411;QD=13.35;ReadPosRankSum=1.696;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1328,138,0
chrVII	951745	.	A	G	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.150;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.62;MQ0=0;MQRankSum=0.055;QD=13.70;ReadPosRankSum=1.696;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:1348,150,0
chrVII	951773	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.02;FS=0.000;HaplotypeScore=7.3803;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=17.35;SB=-1.578e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2063,216,0
chrVII	951825	.	A	T	284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.957;QD=3.69;ReadPosRankSum=1.687;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:1,75:77:42:317,42,0
chrVII	951976	.	G	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=21.39;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1338,141,0
chrVII	951983	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=0.279;QD=17.92;ReadPosRankSum=1.676;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1162,132,0
chrVII	952013	.	G	A	1956	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=20.16;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1989,216,0
chrVII	952051	.	T	G	2591	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=20.56;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2624,291,0
chrVII	952076	.	A	G	2991	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.2408;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.67;SB=-1.424e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:3024,324,0
chrVII	952223	.	T	C	3029	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0217;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.43;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3062,330,0
chrVII	952374	.	C	T	4170.01	PASS	AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=14.0475;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.61;SB=-2.439e+03	GT:AD:DP:GQ:PL	1/1:0,192:193:99:4170,436,0
chrVII	953319	.	A	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.25;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1435,153,0
chrVII	953343	.	T	C	1150	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=2.800;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=0.023;QD=21.30;ReadPosRankSum=2.359;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1183,129,0
chrVII	953540	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=15.96;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1118,120,0
chrVII	953555	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.191;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;MQRankSum=-1.622;QD=15.71;ReadPosRankSum=1.677;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1023,108,0
chrVII	953557	.	A	G	974	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=14.98;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1007,111,0
chrVII	953586	.	G	A	783	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=14.50;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:87:816,87,0
chrVII	953601	.	G	A	813	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=13.78;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:59:90:846,90,0
chrVII	953629	.	A	C	995	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.46;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1028,111,0
chrVII	953709	.	G	A	745	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=11.64;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:81:778,81,0
chrVII	953718	.	G	T	853	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=13.33;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:93:886,93,0
chrVII	953865	.	G	A	1320	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.29;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1353,141,0
chrVII	953935	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.1501;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.35;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1357,153,0
chrVII	954244	.	T	C	1722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.577;QD=22.96;ReadPosRankSum=1.640;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1755,186,0
chrVII	954301	.	A	G	2299	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.54;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2332,258,0
chrVII	954455	.	G	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.56;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1432,153,0
chrVII	954667	.	C	G	3285.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.81;SB=-1.465e+03	GT:AD:DP:GQ:PL	1/1:0,140:144:99:3285,348,0
chrVII	954701	.	C	T	2998	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.78;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:3031,324,0
chrVII	954734	.	T	C	2021	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.21;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2054,219,0
chrVII	954781	.	G	A	1598	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.31;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1631,171,0
chrVII	955004	.	T	C	1685	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.37;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:87:99:1718,186,0
chrVII	955260	.	G	A	1974	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2007,204,0
chrVII	955379	.	C	T	1158	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.63;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1191,126,0
chrVII	955387	.	A	G	1150	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=18.25;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1183,129,0
chrVII	955481	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.17;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1423,147,0
chrVII	955499	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=3.203;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-1.331;QD=20.89;ReadPosRankSum=1.682;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1495,165,0
chrVII	955592	.	A	T	1978	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.50;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2011,210,0
chrVII	955631	.	A	G	2022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.979;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.616;QD=22.22;ReadPosRankSum=1.694;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2055,225,0
chrVII	955670	.	T	C	2025	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2058,219,0
chrVII	956057	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.12;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1265,138,0
chrVII	956108	.	C	T	1701	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.38;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1734,177,0
chrVII	956251	.	C	A	1813	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.58;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1846,192,0
chrVII	956597	.	G	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.03;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1421,156,0
chrVII	957510	.	T	C	2786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.481;DP=128;Dels=0.00;FS=7.854;HaplotypeScore=12.8633;MLEAC=2;MLEAF=1.00;MQ=60.09;MQ0=0;MQRankSum=0.750;QD=21.77;ReadPosRankSum=3.099;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:5,123:128:99:2819,309,0
chrVII	957581	.	T	C	1772	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.2851;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.01;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1805,195,0
chrVII	958235	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.82;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1407,150,0
chrVII	958287	.	A	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.72;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1883,201,0
chrVII	958479	.	A	G	2443	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.05;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2476,273,0
chrVII	958516	.	T	C	2013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=96;Dels=0.00;FS=5.293;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.777;QD=20.97;ReadPosRankSum=3.250;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:4,90:96:99:2046,222,0
chrVII	958592	.	A	G	1887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=86;Dels=0.00;FS=7.782;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.333;QD=21.94;ReadPosRankSum=2.392;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:2,83:86:99:1920,210,0
chrVII	958623	.	A	C	1506	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=70;Dels=0.00;FS=7.318;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.841;QD=21.51;ReadPosRankSum=2.379;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1539,168,0
chrVII	958749	.	C	G	2331	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.00;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2364,252,0
chrVII	958759	.	T	C	2109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=5.138;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.172;QD=18.83;ReadPosRankSum=1.701;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,110:112:99:2142,234,0
chrVII	958856	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.5131;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.26;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1747,189,0
chrVII	958875	.	C	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.42;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1361,141,0
chrVII	958955	.	G	A	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=1.213;QD=15.10;ReadPosRankSum=1.386;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:969,102,0
chrVII	959305	.	C	T	815	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.64;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:848,90,0
chrVII	959381	.	A	G	1418	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.82;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1451,156,0
chrVII	959587	.	G	C	419	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.22;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:48:452,48,0
chrVII	959945	.	T	C	817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.878;QD=19.93;ReadPosRankSum=2.330;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:2,39:41:96:850,96,0
chrVII	960224	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.04;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1235,126,0
chrVII	960326	.	C	T	1202	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.37;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1235,132,0
chrVII	960362	.	C	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.51;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1234,129,0
chrVII	960668	.	T	C	872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.040;QD=21.80;ReadPosRankSum=1.559;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:99:905,99,0
chrVII	960867	.	G	A	1616	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=23.42;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1649,174,0
chrVII	960936	.	A	G	2184	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=22.99;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2217,243,0
chrVII	961037	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=3.632;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-0.058;QD=18.05;ReadPosRankSum=1.675;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1134,123,0
chrVII	961107	.	T	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.21;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1475,153,0
chrVII	961111	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.59;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1454,150,0
chrVII	961203	.	A	T	2667	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=21.00;SB=-1.640e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2700,282,0
chrVII	961217	.	A	G	1945	SnpCluster	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=16.77;SB=-1.532e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:1978,222,0
chrVII	961219	.	A	G	1556	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=118;Dels=0.00;FS=6.118;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-1.043;QD=13.19;ReadPosRankSum=2.633;SB=-1.587e+03	GT:AD:DP:GQ:PL	1/1:3,115:118:99:1589,192,0
chrVII	961220	.	C	A	1587	SnpCluster	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=13.68;SB=-1.579e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:1620,195,0
chrVII	961221	.	C	T	1914	SnpCluster	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=16.50;SB=-1.442e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:1947,225,0
chrVII	961278	.	A	G	2520	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=20.16;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2553,282,0
chrVII	961359	.	T	G	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.968;QD=19.62;ReadPosRankSum=1.630;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1367,147,0
chrVII	961361	.	C	T	1291	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.56;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1324,147,0
chrVII	961398	.	T	C	1181	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=17.12;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1214,132,0
chrVII	961462	.	G	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.87;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1953,204,0
chrVII	961585	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.37;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1484,156,0
chrVII	961597	.	A	C	1380	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.233;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=1.516;QD=17.04;ReadPosRankSum=1.689;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1413,159,0
chrVII	961627	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.41;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1414,153,0
chrVII	961690	.	C	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.74;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1401,156,0
chrVII	961741	.	T	C	934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=4.288;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=0.510;QD=18.31;ReadPosRankSum=1.664;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:967,108,0
chrVII	961780	.	G	C	797	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=12.85;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:62:90:830,90,0
chrVII	962124	.	T	C	2005	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.38;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2038,225,0
chrVII	963805	.	C	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.18;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1198,126,0
chrVII	963897	.	T	C	1237	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.33;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1270,135,0
chrVII	963916	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.6912;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.57;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1617,171,0
chrVII	963952	.	T	C	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-0.531;QD=18.32;ReadPosRankSum=1.686;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1407,153,0
chrVII	964040	.	C	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.25;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1419,150,0
chrVII	964269	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.421;QD=19.59;ReadPosRankSum=1.685;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1502,165,0
chrVII	964575	.	T	C	2036	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2069,222,0
chrVII	965476	.	A	T	773	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.80;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:806,84,0
chrVII	965676	.	T	G	2151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=97;Dels=0.00;FS=3.008;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.552;QD=22.18;ReadPosRankSum=2.398;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:2,94:97:99:2184,237,0
chrVII	965972	.	G	A	2030	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.15;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2063,231,0
chrVII	966950	.	G	C	899	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.40;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:932,99,0
chrVII	967106	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=24.49;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1184,126,0
chrVII	967272	.	C	T	1032	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.64;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1065,111,0
chrVII	967359	.	G	A	1782	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.00;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1815,195,0
chrVII	967708	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=21.06;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1823,189,0
chrVII	967722	.	T	A	1919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.216;QD=20.41;ReadPosRankSum=1.695;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1952,204,0
chrVII	968214	.	A	G	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.770;QD=21.83;ReadPosRankSum=1.520;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1561,149,0
chrVII	968274	.	T	C	748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=3.716;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.606;QD=18.24;ReadPosRankSum=1.646;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:87:781,87,0
chrVII	968406	.	A	C	1233	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=20.90;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1266,138,0
chrVII	968486	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.221;QD=21.05;ReadPosRankSum=1.675;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1338,144,0
chrVII	968764	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.37;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1353,144,0
chrVII	969262	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.20;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1225,135,0
chrVII	969304	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.98;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1134,123,0
chrVII	969533	.	C	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.16;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1159,123,0
chrVII	969634	.	G	A	943	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=15.98;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:976,105,0
chrVII	969646	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.92;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1282,129,0
chrVII	969671	.	A	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.25;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1419,162,0
chrVII	969745	.	C	T	1507	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.08;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1540,162,0
chrVII	969753	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=-1.466;QD=19.21;ReadPosRankSum=1.679;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1301,138,0
chrVII	969927	.	C	T	684	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.00;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:717,78,0
chrVII	970084	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.85;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1258,135,0
chrVII	970107	.	C	T	1244	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.29;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1277,132,0
chrVII	970286	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=17.06;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1176,126,0
chrVII	970290	.	A	T	1053	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=15.04;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1086,114,0
chrVII	970433	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1252,135,0
chrVII	970527	.	A	T	2005	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.133;QD=19.28;ReadPosRankSum=1.632;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2038,225,0
chrVII	970698	.	C	T	2394	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=14.0340;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.94;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2427,258,0
chrVII	971296	.	G	A	1770	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.06;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1803,198,0
chrVII	971305	.	A	G	1774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.8683;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;MQRankSum=0.304;QD=18.29;ReadPosRankSum=1.661;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1807,192,0
chrVII	971377	.	T	G	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.327;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.879;QD=21.68;ReadPosRankSum=0.187;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1442,159,0
chrVII	971401	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=3.658;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.720;QD=20.92;ReadPosRankSum=1.626;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1414,150,0
chrVII	971467	.	C	G	1284	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.83;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1317,144,0
chrVII	971479	.	C	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.3408;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=17.35;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1473,153,0
chrVII	971671	.	A	G	2395	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3193;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=21.01;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2428,267,0
chrVII	971686	.	C	T	2077	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0013;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=20.56;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2110,219,0
chrVII	971719	.	C	T	1672	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.67;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1705,183,0
chrVII	971746	.	C	T	1681	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=19.32;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1714,180,0
chrVII	971914	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.34;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1677,180,0
chrVII	971955	.	G	A	1595	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=18.76;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1628,171,0
chrVII	972004	.	G	A	2255	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.1007;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.50;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2288,246,0
chrVII	972150	.	A	G	1617	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;DP=94;Dels=0.00;FS=3.397;HaplotypeScore=1.9810;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;MQRankSum=-0.258;QD=17.20;ReadPosRankSum=-0.479;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1650,180,0
chrVII	972160	.	T	C	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.489;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2003;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;MQRankSum=-1.330;QD=16.86;ReadPosRankSum=1.921;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:3,86:91:99:1567,171,0
chrVII	972181	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;MQRankSum=-0.650;QD=16.20;ReadPosRankSum=1.602;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1329,141,0
chrVII	972184	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;MQRankSum=-0.619;QD=14.02;ReadPosRankSum=1.650;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1225,135,0
chrVII	972196	.	G	A	1383	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=15.54;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1416,150,0
chrVII	972317	.	G	A	1791	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.67;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1824,189,0
chrVII	972322	.	T	C	1719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.990;QD=20.46;ReadPosRankSum=1.114;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1752,189,0
chrVII	972424	.	C	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.74;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1711,186,0
chrVII	972439	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.31;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1771,192,0
chrVII	972982	.	G	A	818	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=15.15;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:93:851,93,0
chrVII	973057	.	G	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.40;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1531,162,0
chrVII	973111	.	A	G	1025	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=17.98;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1058,117,0
chrVII	973795	.	G	A	1445	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=13.3712;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=1.048;QD=18.77;ReadPosRankSum=1.687;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1478,162,0
chrVII	973814	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.19;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1516,156,0
chrVII	974002	.	A	C	904	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.09;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:937,102,0
chrVII	974385	.	T	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.21;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1621,177,0
chrVII	974423	.	T	C	1749	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7750;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.42;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1782,189,0
chrVII	974639	.	C	T	1412	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.39;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1445,153,0
chrVII	974684	.	A	T	1799	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.77;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1832,201,0
chrVII	975047	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.70;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1417,153,0
chrVII	975265	.	A	C	1061	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.98;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1094,120,0
chrVII	975463	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1087,114,0
chrVII	975632	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.14;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1213,129,0
chrVII	975694	.	G	A	1123	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.04;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1156,126,0
chrVII	975698	.	T	A	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=-1.628;QD=15.01;ReadPosRankSum=2.298;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1249,129,0
chrVII	975724	.	G	A	1156	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.7475;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.27;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1189,132,0
chrVII	975940	.	T	G	1635	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.09;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1668,186,0
chrVII	976015	.	T	C	2526	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=21.05;SB=-1.481e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2559,282,0
chrVII	976033	.	C	T	2995	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.3342;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=20.10;SB=-1.545e+03	GT:AD:DP:GQ:PL	1/1:0,148:149:99:3028,330,0
chrVII	976105	.	A	G	3141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=142;Dels=0.00;FS=4.740;HaplotypeScore=15.6875;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.891;QD=22.12;ReadPosRankSum=1.707;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:1,139:142:99:3174,357,0
chrVII	976174	.	C	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.19;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2213,228,0
chrVII	976270	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=16.54;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1422,147,0
chrVII	976327	.	A	G	1884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.177;QD=19.22;ReadPosRankSum=1.697;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1917,213,0
chrVII	976931	.	T	C	1008	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.91;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1041,114,0
chrVII	977855	.	A	T	1495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.834;QD=18.92;ReadPosRankSum=2.911;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1528,156,0
chrVII	977933	.	T	A	813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=11.1322;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=1.161;QD=16.94;ReadPosRankSum=2.244;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:87:846,87,0
chrVII	978858	.	T	C	1990	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.46;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2023,222,0
chrVII	979414	.	G	A	1999	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=24.08;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,81:83:99:2032,210,0
chrVII	979545	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.76;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1057,117,0
chrVII	979683	.	A	C	1633	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.087;QD=20.41;ReadPosRankSum=1.689;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1666,186,0
chrVII	979733	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=16.56;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1374,150,0
chrVII	980911	.	A	G	1813	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.29;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1846,207,0
chrVII	981478	.	A	G	1207	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.86;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1240,135,0
chrVII	981937	.	G	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.4041;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.02;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1783,195,0
chrVII	982079	.	C	T	1900	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.84;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1933,201,0
chrVII	982112	.	C	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1750,183,0
chrVII	982276	.	G	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=18.1911;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=12.65;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1108,120,0
chrVII	982548	.	G	A	1698	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.71;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1731,189,0
chrVII	982668	.	A	T	1606	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=18.04;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1639,174,0
chrVII	982687	.	C	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=17.28;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1588,165,0
chrVII	983061	.	G	C	947	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=17.54;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:980,108,0
chrVII	983091	.	G	C	901	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=15.53;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:934,102,0
chrVII	983112	.	G	A	765	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=12.97;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:84:798,84,0
chrVII	983114	.	T	C	703	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;MQRankSum=1.075;QD=12.12;ReadPosRankSum=1.673;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:78:736,78,0
chrVII	983122	.	G	C	515	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=10.51;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:60:548,60,0
chrVII	983124	.	A	T	534	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=10.90;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:60:567,60,0
chrVII	983125	.	A	G	473	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=9.46;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:57:506,57,0
chrVII	983126	.	C	T	533	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=10.66;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:60:566,60,0
chrVII	983164	.	C	T	567	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=11.57;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:63:600,63,0
chrVII	983588	.	G	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.68;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1312,138,0
chrVII	983919	.	T	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.89;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1391,150,0
chrVII	984084	.	A	G	846	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.226;QD=18.39;ReadPosRankSum=1.582;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:93:879,93,0
chrVII	984165	.	A	G	1337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.359;QD=20.57;ReadPosRankSum=1.679;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1370,150,0
chrVII	984362	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=23.64;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1806,189,0
chrVII	984558	.	T	C	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.335;QD=22.64;ReadPosRankSum=1.696;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:1,95:97:99:2229,243,0
chrVII	984603	.	G	A	2647	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.8525;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=23.02;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2680,291,0
chrVII	984668	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.34;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1579,174,0
chrVII	984677	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=18.53;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1386,153,0
chrVII	984687	.	C	T	997	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=15.58;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1030,108,0
chrVII	984741	.	T	C	601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.743;QD=13.98;ReadPosRankSum=1.650;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:1,41:43:72:634,72,0
chrVII	984935	.	T	C	2978	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.0197;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=24.61;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3011,327,0
chrVII	985136	.	C	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.57;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1306,135,0
chrVII	985210	.	T	C	1542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=85;Dels=0.00;FS=5.105;HaplotypeScore=11.3417;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.449;QD=18.14;ReadPosRankSum=1.689;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,80:85:99:1575,171,0
chrVII	985232	.	T	C	1659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=1.397;QD=17.84;ReadPosRankSum=1.695;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1692,177,0
chrVII	985244	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=16.71;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1737,186,0
chrVII	985352	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.72;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1504,156,0
chrVII	985412	.	T	G	848	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=14.88;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:96:881,96,0
chrVII	985520	.	G	A	647	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=18.49;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:72:680,72,0
chrVII	985797	.	C	T	1013	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.32;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1046,108,0
chrVII	985817	.	G	A	939	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.87;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:972,108,0
chrVII	985834	.	T	A	742	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=16.49;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:87:775,87,0
chrVII	985935	.	G	A	1002	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1035,114,0
chrVII	986034	.	C	A	967	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=21.98;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1000,111,0
chrVII	986049	.	A	C	874	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=20.33;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:907,102,0
chrVII	986337	.	C	T	1470	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.97;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1503,159,0
chrVII	986380	.	A	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.29;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2013,213,0
chrVII	986601	.	T	C	855	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=17.81;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:888,96,0
chrVII	986763	.	T	A	1546	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=17.77;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1579,168,0
chrVII	986764	.	G	T	1546	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=17.98;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1579,168,0
chrVII	986874	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.28;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1325,138,0
chrVII	987032	.	C	A	633	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:69:666,69,0
chrVII	987228	.	C	T	937	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.37;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:970,102,0
chrVII	987273	.	A	G	754	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.33;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:87:787,87,0
chrVII	987417	.	T	C	554	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=17.87;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:63:587,63,0
chrVII	987450	.	T	C	732	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.91;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:765,84,0
chrVII	987489	.	A	G	886	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=20.14;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:919,99,0
chrVII	987590	.	C	T	861	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=17.22;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:93:894,93,0
chrVII	987595	.	C	T	780	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=15.92;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:84:813,84,0
chrVII	987713	.	A	G	484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-1.317;QD=19.36;ReadPosRankSum=1.595;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:1,24:25:54:517,54,0
chrVII	987788	.	T	G	631	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=20.35;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:75:664,75,0
chrVII	987829	.	T	C	476	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.31;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:57:509,57,0
chrVII	987893	.	C	T	572	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=13.00;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:66:605,66,0
chrVII	987900	.	T	G	531	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.9905;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;QD=12.64;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:63:564,63,0
chrVII	987926	.	G	A	305	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=11.73;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,25:26:36:338,36,0
chrVII	987961	.	A	G	490	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=13.24;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:57:523,57,0
chrVII	987973	.	G	A	514	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=13.53;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:57:547,57,0
chrVII	987979	.	C	T	488	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=13.19;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,36:37:54:521,54,0
chrVII	988018	.	A	G	504	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.27;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,32:33:60:537,60,0
chrVII	988108	.	T	C	407	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.35;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:48:440,48,0
chrVII	988162	.	T	C	680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.386;QD=22.67;ReadPosRankSum=1.502;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:81:713,81,0
chrVII	988195	.	T	C	736	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.44;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:769,81,0
chrVII	988333	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.34;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1356,141,0
chrVII	988432	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=9.6581;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.440;QD=21.33;ReadPosRankSum=1.674;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1334,147,0
chrVII	988609	.	T	C	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-0.999;QD=21.77;ReadPosRankSum=1.651;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1905,207,0
chrVII	988732	.	T	G	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.292;QD=21.36;ReadPosRankSum=1.693;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1934,210,0
chrVII	988808	.	G	C	2101	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.10;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2134,234,0
chrVII	988813	.	A	G	2042	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.73;SB=-1.397e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2075,225,0
chrVII	988846	.	C	A	1987	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.48;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2020,210,0
chrVII	988930	.	A	G	885	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=65;Dels=0.00;FS=3.815;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;MQRankSum=0.720;QD=13.62;ReadPosRankSum=0.453;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:918,105,0
chrVII	988931	.	G	A	933	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.882;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=0.472;QD=13.93;ReadPosRankSum=0.157;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:966,108,0
chrVII	988933	.	C	T	984	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=14.06;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1017,108,0
chrVII	989178	.	C	A	3080	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.8834;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.65;SB=-1.726e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3113,327,0
chrVII	989297	.	C	T	1442	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=22.53;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1475,159,0
chrVII	989305	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0544;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-0.302;QD=20.44;ReadPosRankSum=1.677;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1321,141,0
chrVII	989383	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.09;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1379,144,0
chrVII	989564	.	C	G	1931	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.76;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1964,213,0
chrVII	989918	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1135,123,0
chrVII	990823	.	T	C	1694	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.91;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1727,183,0
chrVII	990841	.	C	A	1701	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.96;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1734,183,0
chrVII	990971	.	A	T	2010	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.65;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2043,222,0
chrVII	991010	.	G	A	2357	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=24.05;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2390,246,0
chrVII	991026	.	C	T	2317	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.72;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2350,240,0
chrVII	991565	.	T	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1910,195,0
chrVII	991689	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;DP=71;Dels=0.00;FS=5.320;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.100;QD=20.13;ReadPosRankSum=2.901;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:3,68:71:99:1462,159,0
chrVII	991695	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=21.23;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1540,159,0
chrVII	991740	.	C	G	1885	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.42;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1918,204,0
chrVII	992004	.	A	G	1394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=67;Dels=0.00;FS=2.822;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.430;QD=20.81;ReadPosRankSum=2.301;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1427,159,0
chrVII	992313	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.0648;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=15.65;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1285,135,0
chrVII	992433	.	T	C	1993	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.54;SB=-1.327e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2026,222,0
chrVII	992436	.	T	C	2012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-0.633;QD=19.35;ReadPosRankSum=1.699;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2045,222,0
chrVII	992448	.	C	T	2169	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.70;SB=-1.559e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2202,234,0
chrVII	992799	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0316;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=20.44;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1791,189,0
chrVII	992889	.	T	C	1781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.9833;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.462;QD=19.57;ReadPosRankSum=1.694;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1814,195,0
chrVII	994032	.	A	C	2004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.828;QD=21.55;ReadPosRankSum=1.694;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2037,222,0
chrVII	994228	.	C	T	925	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.11;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:958,108,0
chrVII	994491	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4476;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.35;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1374,141,0
chrVII	994520	.	C	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.55;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1257,135,0
chrVII	994656	.	T	C	387	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=9.00;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:45:420,45,0
chrVII	994670	.	T	A	133.13	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=4.03;SB=-2.311e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:18:166,18,0
chrVII	994685	.	A	G	207.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=6.68;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:27:240,27,0
chrVII	994687	.	T	C	227.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=7.09;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:27:260,27,0
chrVII	994688	.	T	C	264	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;QD=8.00;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:33:297,33,0
chrVII	994715	.	A	G	496	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=13.41;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:529,60,0
chrVII	994782	.	G	A	883	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=19.62;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:96:916,96,0
chrVII	994826	.	G	A	917	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=17.30;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:950,99,0
chrVII	994829	.	G	A	850	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=16.35;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:883,93,0
chrVII	995040	.	G	A	1837	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=20.19;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1870,210,0
chrVII	995088	.	T	G	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.642;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=44.4594;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;MQRankSum=0.531;QD=0.28;ReadPosRankSum=-2.400;SB=-2.276e+01	GT:AD:DP:GQ:PL	1/1:47,2:49:6:45,6,0
chrVII	995093	.	G	A	844	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=43.4929;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=16.88;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:93:877,93,0
chrVII	995121	.	G	T	890	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=16.18;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:923,99,0
chrVII	995158	.	T	C	739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=-0.766;QD=17.19;ReadPosRankSum=1.652;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:84:772,84,0
chrVII	995225	.	C	A	1086	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=24.68;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1119,117,0
chrVII	995268	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.95;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1185,129,0
chrVII	995282	.	G	A	1165	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=50.1241;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=21.18;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1198,123,0
chrVII	995326	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.693;QD=17.60;ReadPosRankSum=1.429;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,79:83:99:1494,156,0
chrVII	995359	.	G	A	2486	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.25;SB=-1.565e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2519,270,0
chrVII	995395	.	T	C	2654	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=22.30;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2687,291,0
chrVII	995429	.	C	T	2099	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.82;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2132,225,0
chrVII	995575	.	A	G	1820	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.33;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1853,201,0
chrVII	995637	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.37;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1529,156,0
chrVII	995677	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.75;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1489,159,0
chrVII	995719	.	A	C	1897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=1.466;QD=20.62;ReadPosRankSum=1.694;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1930,213,0
chrVII	996064	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.82;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1255,135,0
chrVII	996153	.	C	T	948	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5386;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.59;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:981,105,0
chrVII	996317	.	A	G	956	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.51;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:989,108,0
chrVII	996354	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=17.74;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1115,123,0
chrVII	996376	.	G	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=14.43;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1115,120,0
chrVII	996426	.	A	G	1618	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.98;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1651,177,0
chrVII	996469	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.84;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1429,156,0
chrVII	997222	.	T	G	1712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=0.369;QD=18.02;ReadPosRankSum=1.695;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1745,186,0
chrVII	997225	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=17.32;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:1748,186,0
chrVII	997667	.	C	T	1597	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.18;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1630,168,0
chrVII	997840	.	A	G	1781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.349;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=0.217;QD=21.99;ReadPosRankSum=1.689;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1814,201,0
chrVII	998281	.	C	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.81;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1876,195,0
chrVII	998284	.	C	T	1961	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.09;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1994,210,0
chrVII	998967	.	T	C	1619	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9199;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.607;QD=21.03;ReadPosRankSum=1.642;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1652,180,0
chrVII	999229	.	T	C	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=67;Dels=0.00;FS=3.424;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.840;QD=20.99;ReadPosRankSum=1.680;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1439,137,0
chrVII	999249	.	T	C	1009	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=19.04;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1042,111,0
chrVII	999269	.	A	G	726	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=14.52;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:84:759,84,0
chrVII	999313	.	A	G	578	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.55;MQ0=0;MQRankSum=-1.733;QD=15.62;ReadPosRankSum=1.639;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:66:611,66,0
chrVII	999317	.	A	G	585	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=17.73;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:69:618,69,0
chrVII	999319	.	G	C	633	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=19.18;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:666,72,0
chrVII	999344	.	G	T	812	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.30;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:845,90,0
chrVII	999392	.	C	T	846	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.00;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:879,93,0
chrVII	999528	.	T	C	588	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=17.29;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,33:34:66:621,66,0
chrVII	999553	.	T	A	94.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.100;DP=14;Dels=0.00;FS=9.590;HaplotypeScore=5.2232;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.091;QD=6.73;ReadPosRankSum=1.369;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:2,12:14:15:127,15,0
chrVII	999604	.	A	G	650	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=20.97;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:78:683,78,0
chrVII	999647	.	A	G	895	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.89;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,41:45:99:928,102,0
chrVII	999668	.	G	C	1226	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.89;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1259,138,0
chrVII	999737	.	A	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1506,165,0
chrVII	1000197	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.09;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1121,126,0
chrVII	1000433	.	A	G	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.905;DP=74;Dels=0.00;FS=20.635;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.164;QD=16.46;ReadPosRankSum=2.823;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1251,138,0
chrVII	1000436	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=15.67;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1177,132,0
chrVII	1000645	.	C	T	780	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.50;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:813,84,0
chrVII	1000659	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=20.97;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:767,81,0
chrVII	1000855	.	C	T	4853.01	PASS	AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=11.6884;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.39;SB=-1.697e+03	GT:AD:DP:GQ:PL	1/1:0,198:199:99:4853,511,0
chrVII	1001631	.	T	C	843	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=1;QD=17.20;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:876,96,0
chrVII	1001650	.	A	G	916	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=1;QD=17.62;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:949,102,0
chrVII	1002500	.	G	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6499;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.91;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1917,201,0
chrVII	1002934	.	A	G	1618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;DP=85;Dels=0.00;FS=5.415;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.322;QD=19.04;ReadPosRankSum=2.917;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:3,82:85:99:1651,186,0
chrVII	1003026	.	T	C	2372	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.37;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2405,261,0
chrVII	1003201	.	G	C	1604	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.5309;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.56;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1637,180,0
chrVII	1003414	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.825;QD=16.43;ReadPosRankSum=0.371;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:1462,159,0
chrVII	1004074	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1507,162,0
chrVII	1004183	.	C	G	888	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.73;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:921,102,0
chrVII	1004505	.	C	T	301	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=15.84;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:36:334,36,0
chrVII	1004566	.	G	A	573	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=23.87;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:66:606,66,0
chrVII	1004716	.	G	A	559	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.36;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,24:25:69:592,69,0
chrVII	1005136	.	C	T	1105	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7442;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.46;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1138,120,0
chrVII	1005907	.	T	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.22;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1433,159,0
chrVII	1006073	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=19.77;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1259,141,0
chrVII	1006084	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=20.19;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1507,156,0
chrVII	1006107	.	T	C	1827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=-0.208;QD=18.27;ReadPosRankSum=1.697;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1860,198,0
chrVII	1006113	.	G	A	1998	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;QD=16.93;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2031,210,0
chrVII	1006156	.	G	A	2416	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.66;SB=-1.765e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:2449,258,0
chrVII	1006229	.	T	C	2401	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=12.3748;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.06;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2434,276,0
chrVII	1006351	.	A	G	947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=51;Dels=0.00;FS=4.771;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.597;QD=18.57;ReadPosRankSum=1.664;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:980,105,0
chrVII	1006496	.	G	A	2126	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.87;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2159,231,0
chrVII	1006715	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.91;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1367,144,0
chrVII	1006748	.	C	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.10;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1278,138,0
chrVII	1006862	.	G	A	1559	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5105;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.27;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1592,168,0
chrVII	1006922	.	G	C	1806	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.74;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1839,201,0
chrVII	1006976	.	C	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.89;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1452,150,0
chrVII	1007272	.	A	G	2360	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0101;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.60;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2393,255,0
chrVII	1007547	.	C	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0583;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=24.25;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1755,186,0
chrVII	1007580	.	A	G	1885	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-1.664;QD=18.12;ReadPosRankSum=1.698;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,101:104:99:1918,210,0
chrVII	1007596	.	G	A	2834	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.47;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2867,300,0
chrVII	1007788	.	C	G	1268	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.93;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,63:67:99:1301,141,0
chrVII	1007806	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=19.41;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1450,159,0
chrVII	1008097	.	A	G	881	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:914,99,0
chrVII	1008148	.	A	G	795	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.08;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:828,87,0
chrVII	1008259	.	T	C	1922	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.219;QD=23.73;ReadPosRankSum=1.689;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1955,216,0
chrVII	1008427	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.53;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1400,147,0
chrVII	1008592	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0391;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.93;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1767,189,0
chrVII	1009021	.	C	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.61;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1322,141,0
chrVII	1009086	.	C	T	1691	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.49;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1724,183,0
chrVII	1009263	.	A	G	680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=42;Dels=0.00;FS=3.118;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.329;QD=16.19;ReadPosRankSum=2.333;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:2,40:42:78:713,78,0
chrVII	1009276	.	A	G	746	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=4.030;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=-0.201;QD=17.35;ReadPosRankSum=1.652;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:87:779,87,0
chrVII	1009506	.	A	T	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.245;QD=17.12;ReadPosRankSum=1.678;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1146,120,0
chrVII	1009525	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=16.78;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1124,120,0
chrVII	1009617	.	A	G	1250	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.84;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1283,138,0
chrVII	1009713	.	C	T	1266	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.09;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1299,135,0
chrVII	1009717	.	C	G	1118	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.20;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1151,126,0
chrVII	1009864	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.08;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1783,189,0
chrVII	1009948	.	G	C	903	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.00;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:936,102,0
chrVII	1010218	.	G	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.32;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1598,171,0
chrVII	1010455	.	G	C	974	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.10;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1007,114,0
chrVII	1010790	.	A	G	607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-1.466;QD=15.17;ReadPosRankSum=1.644;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:1,38:40:69:640,69,0
chrVII	1010860	.	G	A	588	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.29;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:66:621,66,0
chrVII	1010866	.	T	C	556	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.37;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:66:589,66,0
chrVII	1010934	.	C	G	732	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=12.62;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:81:765,81,0
chrVII	1011025	.	G	A	536	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.48;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:60:569,60,0
chrVII	1011132	.	T	C	526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-1.509;QD=16.97;ReadPosRankSum=1.509;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:63:559,63,0
chrVII	1011163	.	C	G	846	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.39;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:879,93,0
chrVII	1011166	.	C	A	857	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.23;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:890,93,0
chrVII	1011203	.	T	C	665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.6934;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=0.332;QD=14.15;ReadPosRankSum=1.659;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:75:698,75,0
chrVII	1011221	.	G	C	507	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=12.07;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:60:540,60,0
chrVII	1011379	.	G	A	482	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=15.55;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:515,57,0
chrVII	1011503	.	A	G	381	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=11.55;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:45:414,45,0
chrVII	1011587	.	G	A	920	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=15.08;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,61:61:99:953,102,0
chrVII	1011639	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.24;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1025,114,0
chrVII	1011792	.	C	T	452	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.83;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:54:485,54,0
chrVII	1012069	.	T	A	586	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.28;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:619,66,0
chrVII	1012213	.	T	C	1912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.220;DP=108;Dels=0.00;FS=14.113;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.411;QD=17.70;ReadPosRankSum=3.271;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:4,101:108:99:1945,213,0
chrVII	1012544	.	A	G	2176	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.40;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2209,243,0
chrVII	1012661	.	C	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8549;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.88;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2024,213,0
chrVII	1013000	.	C	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=14.76;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1184,129,0
chrVII	1013048	.	A	T	1171	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=15.41;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1204,123,0
chrVII	1013720	.	C	T	1391	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.55;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1424,150,0
chrVII	1013788	.	C	A	1954	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4227;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.26;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1987,207,0
chrVII	1014095	.	A	G	931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=42.2153;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=0.975;QD=19.81;ReadPosRankSum=2.345;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:2,45:47:99:964,102,0
chrVII	1014141	.	T	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.38;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1180,126,0
chrVII	1014179	.	T	A	1285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.816;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=13.6303;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.546;QD=18.36;ReadPosRankSum=2.062;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1318,138,0
chrVII	1014216	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.3794;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.346;QD=21.31;ReadPosRankSum=1.689;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1759,186,0
chrVII	1014339	.	A	G	860	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=25.29;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:96:893,96,0
chrVII	1014432	.	G	A	398	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=18.09;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:48:431,48,0
chrVII	1014663	.	C	G	595	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.83;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:66:628,66,0
chrVII	1014732	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.53;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1430,150,0
chrVII	1014835	.	C	T	1535	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.76;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1568,165,0
chrVII	1014918	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.72;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1293,141,0
chrVII	1015016	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.12;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1493,156,0
chrVII	1015059	.	C	T	1764	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1797,186,0
chrVII	1015147	.	T	G	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1041;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.143;QD=22.02;ReadPosRankSum=1.651;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1905,210,0
chrVII	1015265	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.18;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1337,144,0
chrVII	1015335	.	C	A	1691	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.25;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1724,186,0
chrVII	1015395	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.95;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1625,168,0
chrVII	1016165	.	G	A	2995	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=21.86;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3028,312,0
chrVII	1016232	.	G	A	3474.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.16;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3474,366,0
chrVII	1016394	.	A	G	2188	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.3027;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.04;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2221,243,0
chrVII	1016532	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.201;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.331;QD=16.92;ReadPosRankSum=2.350;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:1708,192,0
chrVII	1016553	.	T	G	1604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=6.821;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=-0.051;QD=15.57;ReadPosRankSum=1.698;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,100:103:99:1637,180,0
chrVII	1016640	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.476;QD=22.52;ReadPosRankSum=1.668;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1249,135,0
chrVII	1016792	.	A	G	876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.0868;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.184;QD=18.64;ReadPosRankSum=1.659;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:909,99,0
chrVII	1017487	.	G	A	2058	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.66;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2091,216,0
chrVII	1017535	.	A	G	2146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.620;QD=19.69;ReadPosRankSum=1.669;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2179,240,0
chrVII	1018075	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.09;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:961,108,0
chrVII	1018435	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=16.71;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1069,117,0
chrVII	1018796	.	T	G	1683	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4839;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=23.05;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1716,189,0
chrVII	1019116	.	G	C	1850	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.03;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1883,204,0
chrVII	1019203	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.70;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1660,180,0
chrVII	1019210	.	A	G	1598	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=87;Dels=0.00;FS=7.495;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.666;QD=18.37;ReadPosRankSum=2.337;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1631,174,0
chrVII	1019751	.	C	T	2731	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=15.3961;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.14;SB=-1.532e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2764,288,0
chrVII	1020960	.	A	T	1948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.929;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.732;QD=23.19;ReadPosRankSum=1.691;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1981,207,0
chrVII	1020978	.	G	A	1775	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.19;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1808,195,0
chrVII	1021064	.	A	G	1414	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.20;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1447,156,0
chrVII	1021490	.	T	C	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=4.367;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.648;QD=21.54;ReadPosRankSum=1.648;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1799,195,0
chrVII	1021553	.	C	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.19;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1842,192,0
chrVII	1022061	.	A	C	658	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:75:691,75,0
chrVII	1022121	.	G	A	901	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.52;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:934,99,0
chrVII	1022173	.	C	T	946	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.19;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:979,102,0
chrVII	1022196	.	G	A	682	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=13.37;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:75:715,75,0
chrVII	1022204	.	A	C	657	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=12.40;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,50:53:75:690,75,0
chrVII	1022301	.	A	G	614	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.93;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:69:647,69,0
chrVII	1022400	.	T	C	1646	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.21;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1679,180,0
chrVII	1022816	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1547,162,0
chrVII	1023234	.	A	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.50;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1509,165,0
chrVII	1023277	.	C	T	1969	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=23.44;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2002,207,0
chrVII	1023336	.	A	G	2531	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.57;SB=-1.409e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2564,276,0
chrVII	1023633	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.08;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1733,183,0
chrVII	1023664	.	C	T	1631	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.65;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1664,171,0
chrVII	1023685	.	T	C	1596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.048;QD=19.23;ReadPosRankSum=1.689;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:2,80:83:99:1629,177,0
chrVII	1024185	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.58;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1311,135,0
chrVII	1024337	.	G	C	1659	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.27;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1692,186,0
chrVII	1024832	.	C	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.62;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1676,180,0
chrVII	1025033	.	A	G	2044	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=118;Dels=0.03;FS=6.293;HaplotypeScore=28.3869;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=0.979;QD=17.32;ReadPosRankSum=1.581;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2077,231,0
chrVII	1025187	.	G	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.61;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1373,150,0
chrVII	1025709	.	C	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1721,177,0
chrVII	1026195	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.6729;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.000;QD=19.77;ReadPosRankSum=1.653;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1773,189,0
chrVII	1026465	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.57;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1501,159,0
chrVII	1026692	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.49;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1456,153,0
chrVII	1027071	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.53;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1303,144,0
chrVII	1027133	.	C	T	1936	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.33;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1969,210,0
chrVII	1027279	.	A	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.92;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1458,156,0
chrVII	1027359	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.13;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2312,255,0
chrVII	1027579	.	T	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.39;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1277,138,0
chrVII	1027604	.	A	G	1245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.720;QD=19.15;ReadPosRankSum=1.679;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1278,141,0
chrVII	1027936	.	T	C	814	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.09;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:847,93,0
chrVII	1028091	.	G	A	1924	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.25;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1957,204,0
chrVII	1028104	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.24;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1814,189,0
chrVII	1028368	.	T	G	875	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.51;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:96:908,96,0
chrVII	1028485	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.80;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1364,150,0
chrVII	1028507	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.66;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1134,120,0
chrVII	1029431	.	C	T	795	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.07;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:828,87,0
chrVII	1029502	.	G	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.22;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1646,174,0
chrVII	1029664	.	A	T	1496	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.75;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1529,159,0
chrVII	1030416	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1553,159,0
chrVII	1030489	.	G	A	1072	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.33;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1105,117,0
chrVII	1030794	.	G	A	1728	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.15;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1761,183,0
chrVII	1030897	.	C	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.25;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1053,114,0
chrVII	1030902	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=20.31;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1069,114,0
chrVII	1031026	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.64;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1483,156,0
chrVII	1031055	.	T	C	1391	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.017;QD=19.05;ReadPosRankSum=2.381;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:2,69:73:99:1424,156,0
chrVII	1031137	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.50;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1632,174,0
chrVII	1031217	.	A	C	1587	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.89;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1620,177,0
chrVII	1031230	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=10.510;HaplotypeScore=7.7819;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-1.132;QD=18.22;ReadPosRankSum=2.393;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1600,171,0
chrVII	1031339	.	C	T	2109	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.24;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2142,222,0
chrVII	1031636	.	C	T	2474	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.95;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2507,258,0
chrVII	1031685	.	G	A	1929	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.09;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1962,204,0
chrVII	1031725	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.65;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1960,210,0
chrVII	1031802	.	A	G	3010	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.65;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,137:139:99:3043,330,0
chrVII	1031857	.	A	G	2467	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.91;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2500,270,0
chrVII	1031894	.	C	G	2088	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.89;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2121,234,0
chrVII	1031952	.	A	G	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.435;QD=20.64;ReadPosRankSum=2.400;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:2076,225,0
chrVII	1032459	.	C	T	1898	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.09;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1931,207,0
chrVII	1033284	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.36;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1251,132,0
chrVII	1033467	.	C	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.07;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1863,192,0
chrVII	1033653	.	A	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.97;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1687,177,0
chrVII	1033830	.	G	A	794	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.90;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:827,87,0
chrVII	1033866	.	T	C	760	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.51;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:793,87,0
chrVII	1034067	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.199;QD=22.28;ReadPosRankSum=1.562;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1392,156,0
chrVII	1034373	.	C	T	1013	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1046,108,0
chrVII	1034541	.	A	G	981	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.80;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1014,108,0
chrVII	1034625	.	T	C	994	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.12;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1027,108,0
chrVII	1034811	.	T	C	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.178;QD=21.53;ReadPosRankSum=1.640;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1648,180,0
chrVII	1034846	.	G	A	2293	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9183;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.64;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2326,240,0
chrVII	1035138	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.62;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1784,195,0
chrVII	1035498	.	T	C	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.184;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.094;QD=20.08;ReadPosRankSum=1.641;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1559,171,0
chrVII	1035627	.	A	G	1369	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.06;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1402,153,0
chrVII	1036371	.	T	C	1955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.407;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=12.5847;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.613;QD=20.15;ReadPosRankSum=1.696;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1988,216,0
chrVII	1036812	.	A	G	1700	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.24;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1733,189,0
chrVII	1037301	.	T	C	1809	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.61;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1842,198,0
chrVII	1037556	.	A	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.99;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1607,171,0
chrVII	1037791	.	A	T	2632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.372;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.133;QD=25.31;ReadPosRankSum=1.699;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2665,282,0
chrVII	1038433	.	A	G	1497	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.03;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1530,165,0
chrVII	1038689	.	T	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.54;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1433,159,0
chrVII	1039298	.	T	G	1811	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=19.68;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1844,201,0
chrVII	1039299	.	A	G	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=0.377;QD=18.97;ReadPosRankSum=1.657;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,91:94:99:1816,195,0
chrVII	1039378	.	A	C	2752	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.3426;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.72;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2785,300,0
chrVII	1039425	.	A	C	2550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=113;Dels=0.00;FS=3.008;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-2.145;QD=22.57;ReadPosRankSum=2.384;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:2,111:113:99:2583,279,0
chrVII	1039460	.	T	C	2441	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.78;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2474,270,0
chrVII	1039470	.	C	G	2509	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.31;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2542,279,0
chrVII	1039568	.	T	A	1610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=-0.433;QD=19.88;ReadPosRankSum=1.689;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1643,177,0
chrVII	1039575	.	T	C	1790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=2.853;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.040;QD=19.46;ReadPosRankSum=2.343;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1823,198,0
chrVII	1039621	.	A	G	1798	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=18.73;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1831,198,0
chrVII	1039634	.	A	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=17.66;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1746,192,0
chrVII	1039668	.	T	C	1597	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=19.96;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1630,177,0
chrVII	1039678	.	G	A	1565	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.44;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1598,168,0
chrVII	1039783	.	T	G	2546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=125;Dels=0.00;FS=4.122;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.670;QD=20.37;ReadPosRankSum=1.704;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:1,123:125:99:2579,282,0
chrVII	1039805	.	G	A	2751	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.37;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2784,303,0
chrVII	1040012	.	C	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.47;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1746,183,0
chrVII	1040013	.	C	T	1749	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.87;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1782,186,0
chrVII	1040155	.	G	A	2058	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.6587;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.54;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2091,219,0
chrVII	1040349	.	T	C	2444	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=1.340;QD=23.06;ReadPosRankSum=1.634;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2477,267,0
chrVII	1040573	.	A	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.21;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1854,201,0
chrVII	1041497	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.90;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1186,126,0
chrVII	1041632	.	G	A	968	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1001,105,0
chrVII	1041814	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=75;Dels=0.00;FS=4.279;HaplotypeScore=5.0495;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.670;QD=22.80;ReadPosRankSum=-1.547;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1743,189,0
chrVII	1041874	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.55;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1323,141,0
chrVII	1042578	.	C	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.74;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1555,168,0
chrVII	1042643	.	T	G	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.146;QD=21.74;ReadPosRankSum=1.679;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1446,159,0
chrVII	1042826	.	A	G	1728	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=85;Dels=0.00;FS=6.028;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.274;QD=20.33;ReadPosRankSum=2.917;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:3,82:85:99:1761,195,0
chrVII	1043244	.	A	G	1543	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.73;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1576,171,0
chrVII	1043695	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=14.99;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1367,150,0
chrVII	1044068	.	G	C	929	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.81;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:99:962,105,0
chrVII	1044113	.	C	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1058,111,0
chrVII	1044161	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1606,174,0
chrVII	1044225	.	G	A	1839	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.90;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1872,195,0
chrVII	1044266	.	A	C	1529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=75;Dels=0.00;FS=3.072;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.840;QD=20.39;ReadPosRankSum=2.381;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:2,70:75:99:1562,171,0
chrVII	1044356	.	T	C	1788	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.355;QD=21.54;ReadPosRankSum=1.690;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1821,201,0
chrVII	1044371	.	A	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.76;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1687,189,0
chrVII	1044966	.	T	C	2661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=137;Dels=0.00;FS=9.931;HaplotypeScore=10.6209;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.052;QD=19.42;ReadPosRankSum=2.948;SB=-1.479e+03	GT:AD:DP:GQ:PL	1/1:3,133:137:99:2694,291,0
chrVII	1045136	.	T	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.10;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1234,135,0
chrVII	1045190	.	C	T	1591	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.79;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1624,168,0
chrVII	1045214	.	A	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1865;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.99;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1858,195,0
chrVII	1045427	.	T	C	1080	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.4719;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.29;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,53:56:99:1113,123,0
chrVII	1048158	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.69;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1485,159,0
chrVII	1048437	.	G	A	397.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.034;DP=111;Dels=0.00;FS=5.165;HaplotypeScore=112.2642;MLEAC=1;MLEAF=0.500;MQ=42.49;MQ0=0;MQRankSum=0.553;QD=3.58;ReadPosRankSum=7.391;SB=-4.600e+02	GT:AD:DP:GQ:PL	0/1:48,61:111:99:427,0,539
chrVII	1049349	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.16;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:991,111,0
chrVII	1049398	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.4214;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.90;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1287,138,0
chrVII	1049715	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.36;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,55:58:99:1156,123,0
chrVII	1050080	.	G	A	3091	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.42;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:3124,327,0
chrVII	1050866	.	T	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.56;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1206,126,0
chrVII	1051093	.	T	C	1672	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.647;QD=20.14;ReadPosRankSum=1.690;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1705,186,0
chrVII	1051540	.	G	A	1746	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=10.2889;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.00;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1779,186,0
chrVII	1051991	.	A	G	722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=6.463;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.503;QD=23.29;ReadPosRankSum=1.621;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:81:755,81,0
chrVII	1052107	.	C	T	1150	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.055;DP=51;Dels=0.00;FS=2.660;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.074;QD=22.55;ReadPosRankSum=1.312;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:1183,109,0
chrVII	1052288	.	T	G	378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=5.229;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.693;QD=12.60;ReadPosRankSum=1.617;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:45:411,45,0
chrVII	1052548	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=67;Dels=0.00;FS=3.658;HaplotypeScore=7.4255;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.080;QD=19.85;ReadPosRankSum=1.679;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1363,144,0
chrVII	1052841	.	G	A	1248	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.13;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1281,132,0
chrVII	1052940	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.31;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1828,192,0
chrVII	1053627	.	C	T	1772	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.37;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1805,186,0
chrVII	1054383	.	T	C	982	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.04;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1015,108,0
chrVII	1054411	.	T	C	1121	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.02;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1154,123,0
chrVII	1055001	.	G	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.07;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1213,126,0
chrVII	1055022	.	C	T	1296	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.94;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1329,141,0
chrVII	1055127	.	A	G	1020	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.40;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1053,114,0
chrVII	1055601	.	C	T	1263	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.05;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1296,141,0
chrVII	1055697	.	A	G	1752	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.75;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1785,195,0
chrVII	1056387	.	T	A	1023	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=22.24;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1056,111,0
chrVII	1056405	.	A	T	1001	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=21.76;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1034,108,0
chrVII	1057500	.	C	T	690	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=20.91;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:78:723,78,0
chrVII	1057542	.	G	A	1111	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=19.16;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1144,123,0
chrVII	1057559	.	T	C	1343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;MQRankSum=-1.059;QD=18.65;ReadPosRankSum=1.684;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1376,153,0
chrVII	1057568	.	T	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=18.88;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1430,150,0
chrVII	1057752	.	C	T	1865	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.22;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1898,201,0
chrVII	1057770	.	A	T	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.441;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=0.337;QD=19.43;ReadPosRankSum=1.642;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1529,162,0
chrVII	1059000	.	T	C	2368	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5657;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.93;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2401,261,0
chrVII	1059009	.	T	C	2343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.913;QD=21.30;ReadPosRankSum=-0.315;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2376,264,0
chrVII	1059071	.	G	T	2327	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.04;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2360,243,0
chrVII	1059129	.	C	T	2259	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.59;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2292,243,0
chrVII	1059203	.	T	C	2133	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=12.7496;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.71;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2166,240,0
chrVII	1059318	.	G	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.22;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1764,192,0
chrVII	1059354	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=15.65;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1598,177,0
chrVII	1059363	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=15.30;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1532,168,0
chrVII	1059977	.	T	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.14;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1555,162,0
chrVII	1060055	.	C	T	2001	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.81;SB=-1.331e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2034,213,0
chrVII	1060130	.	A	C	2309	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2342,255,0
chrVII	1060260	.	C	T	2053	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.81;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2086,216,0
chrVII	1061120	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.27;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1401,147,0
chrVII	1061571	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=16.95;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:982,108,0
chrVII	1061731	.	C	T	3152	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.25;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3185,330,0
chrVII	1062031	.	T	C	1850	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=19.89;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1883,204,0
chrVII	1062188	.	C	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2708;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.96;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1344,147,0
chrVII	1062869	.	A	G	981	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.87;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1014,108,0
chrVII	1062938	.	A	G	821	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=3.017;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.704;QD=15.49;ReadPosRankSum=2.217;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:2,51:53:96:854,96,0
chrVII	1063103	.	A	G	805	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.72;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:90:838,90,0
chrVII	1063216	.	C	T	412	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.73;SB=-6.790e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:45:445,45,0
chrVII	1063349	.	T	C	705	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:78:738,78,0
chrVII	1063378	.	C	T	453	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.59;SB=-6.580e-03	GT:AD:DP:GQ:PL	1/1:0,20:22:51:486,51,0
chrVII	1063387	.	T	C	384	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.33;SB=-6.725e-03	GT:AD:DP:GQ:PL	1/1:0,18:18:45:417,45,0
chrVII	1063600	.	A	G	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=6.44;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:57,6,0
chrVII	1063646	.	A	G	179.03	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=13.77;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:212,24,0
chrVII	1063752	.	C	T	1404	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5507;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.80;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1437,150,0
chrVII	1063805	.	C	T	2077	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.97;SB=-1.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2110,225,0
chrVII	1063846	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=26.86;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1215,132,0
chrVII	1064947	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.97;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1591,165,0
chrVII	1065116	.	A	C	1049	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.31;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1082,117,0
chrVII	1065159	.	A	C	665	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.78;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:698,78,0
chrVII	1065808	.	A	T	1710	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.43;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1743,180,0
chrVII	1066097	.	C	T	3018	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.8549;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.58;SB=-1.576e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3051,318,0
chrVII	1067171	.	C	A	3591.01	PASS	AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=11.0367;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.31;SB=-1.650e+03	GT:AD:DP:GQ:PL	1/1:0,185:186:99:3591,393,0
chrVII	1067312	.	C	T	1818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=82;Dels=0.00;FS=3.120;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.602;QD=22.17;ReadPosRankSum=1.646;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1851,189,0
chrVII	1067738	.	G	T	1676	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.985;DP=106;Dels=0.00;FS=37.765;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=7.131;QD=15.81;ReadPosRankSum=-1.028;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:26,80:106:90:1709,90,0
chrVII	1067897	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.7761;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=13.58;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,127:130:99:1798,195,0
chrVII	1067985	.	T	A	930.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;DP=105;Dels=0.00;FS=6.522;HaplotypeScore=7.0434;MLEAC=1;MLEAF=0.500;MQ=54.30;MQ0=0;MQRankSum=1.651;QD=8.86;ReadPosRankSum=0.029;SB=-4.470e+02	GT:AD:DP:GQ:PL	0/1:51,54:105:99:960,0,935
chrVII	1068149	.	G	A	2813	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=14.3109;MLEAC=2;MLEAF=1.00;MQ=46.92;MQ0=0;QD=18.63;SB=-1.673e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:2846,306,0
chrVII	1068305	.	A	G	2705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=18.1083;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-0.939;QD=20.65;ReadPosRankSum=1.706;SB=-1.567e+03	GT:AD:DP:GQ:PL	1/1:1,130:131:99:2738,294,0
chrVII	1068463	.	A	G	775.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=46.23;MQ0=2;MQRankSum=0.912;QD=6.41;ReadPosRankSum=-0.738;SB=-4.870e+02	GT:AD:DP:GQ:PL	0/1:69,51:121:99:805,0,1270
chrVII	1068524	.	T	C	2174	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=19.76;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2207,243,0
chrVII	1068533	.	G	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.97;MQ0=0;QD=18.13;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1882,207,0
chrVII	1068569	.	T	C	1563	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2551;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=13.47;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,113:116:99:1596,183,0
chrVII	1068602	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=42.68;MQ0=0;QD=10.83;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1224,141,0
chrVII	1068608	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;MQRankSum=-0.082;QD=10.93;ReadPosRankSum=2.403;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:2,104:107:99:1202,141,0
chrVII	1068680	.	A	G	2100	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=0.353;QD=18.58;ReadPosRankSum=1.671;SB=-1.419e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2133,237,0
chrVII	1068831	.	G	A	773	filter	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=4;QD=8.99;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:87:806,87,0
chrVII	1068842	.	T	C	795	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=3;QD=9.03;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:90:828,90,0
chrVII	1068848	.	G	A	299	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.05;MQ0=1;QD=4.98;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:36:332,36,0
chrVII	1068856	.	G	A	336	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.38;MQ0=0;QD=5.60;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:39:369,39,0
chrVII	1068865	.	C	A	321	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0910;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=5.44;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:39:354,39,0
chrVII	1068869	.	C	A	206.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.985;DP=56;Dels=0.00;FS=1.714;HaplotypeScore=4.0910;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;MQRankSum=2.335;QD=3.68;ReadPosRankSum=2.470;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:7,49:56:27:239,27,0
chrVII	1068872	.	T	C	213.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.483;DP=55;Dels=0.00;FS=4.214;HaplotypeScore=17.5194;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;MQRankSum=1.508;QD=3.87;ReadPosRankSum=3.645;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:5,50:55:27:246,27,0
chrVII	1068878	.	G	A	238	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2592;MLEAC=2;MLEAF=1.00;MQ=30.80;MQ0=0;QD=4.67;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:30:271,30,0
chrVII	1069265	.	A	G	996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=51;Dels=0.00;FS=3.188;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=1.663;QD=19.53;ReadPosRankSum=1.663;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:99:1029,111,0
chrVII	1069334	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.312;QD=19.35;ReadPosRankSum=1.680;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1310,144,0
chrVII	1069481	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.03;FS=0.000;HaplotypeScore=12.1456;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.66;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1642,180,0
chrVII	1069551	.	C	A	1596	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.80;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1629,168,0
chrVII	1069607	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=10.7583;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=20.45;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,61:65:99:1362,150,0
chrVII	1069845	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.25;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1573,174,0
chrVII	1069912	.	G	A	1867	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=21.46;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1900,198,0
chrVII	1070011	.	C	T	793	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=12.39;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:87:826,87,0
chrVII	1070200	.	T	C	2556	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=127;Dels=0.00;FS=7.245;HaplotypeScore=7.4921;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=0.673;QD=20.13;ReadPosRankSum=2.411;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:2,124:127:99:2589,279,0
chrVII	1070598	.	C	A	2078	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.65;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2111,225,0
chrVII	1070793	.	T	C	1746	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.169;QD=21.04;ReadPosRankSum=1.690;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1779,195,0
chrVII	1071136	.	G	A	1766	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=18.21;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1799,189,0
chrVII	1071144	.	T	C	1609	SnpCluster	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=16.76;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1642,180,0
chrVII	1071147	.	A	G	1718	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.08;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1751,189,0
chrVII	1071150	.	A	G	1713	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=0.911;QD=17.30;ReadPosRankSum=1.696;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:1,96:99:99:1746,192,0
chrVII	1071263	.	C	G	1519	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1552,171,0
chrVII	1071302	.	A	G	1200	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.69;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1233,135,0
chrVII	1071374	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.29;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1314,144,0
chrVII	1071417	.	C	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.88;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1703,186,0
chrVII	1071822	.	A	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.17;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1218,132,0
chrVII	1072024	.	G	T	1800	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.93;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1833,195,0
chrVII	1072028	.	G	A	1492	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=18.65;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1525,168,0
chrVII	1072066	.	C	G	1301	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=18.59;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1334,138,0
chrVII	1072360	.	C	T	3218.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.04;SB=-1.736e+03	GT:AD:DP:GQ:PL	1/1:0,145:146:99:3251,360,0
chrVII	1072449	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.57;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1521,162,0
chrVII	1072470	.	T	C	1939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.130;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-1.063;QD=22.03;ReadPosRankSum=1.693;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1972,219,0
chrVII	1072500	.	G	A	2791	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9772;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.31;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,129:131:99:2824,294,0
chrVII	1072524	.	C	T	2833	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.30;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2866,297,0
chrVII	1072562	.	T	G	3193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=148;Dels=0.00;FS=4.430;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;MQRankSum=0.884;QD=21.57;ReadPosRankSum=1.709;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:1,146:148:99:3226,357,0
chrVII	1072638	.	A	T	2752	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.3509;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.33;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2785,303,0
chrVII	1072664	.	A	G	2651	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=0.137;QD=21.04;ReadPosRankSum=1.677;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,125:126:99:2684,294,0
chrVII	1072724	.	G	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=22.05;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1466,153,0
chrVII	1072857	.	C	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=21.27;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1671,177,0
chrVII	1072876	.	T	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;QD=20.31;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1536,165,0
chrVII	1072907	.	G	T	890	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=18.54;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:923,96,0
chrVII	1073156	.	G	A	442	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=6.60;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:51:475,51,0
chrVII	1073165	.	A	G	509	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=8.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;MQRankSum=-0.212;QD=7.95;ReadPosRankSum=2.373;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:57:542,57,0
chrVII	1073194	.	T	A	624	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=10.95;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:69:657,69,0
chrVII	1073204	.	T	C	559	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;MQRankSum=1.662;QD=11.41;ReadPosRankSum=1.662;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:63:592,63,0
chrVII	1073216	.	T	A	566	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=10.68;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:63:599,63,0
chrVII	1073220	.	A	G	581	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=9.85;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:69:614,69,0
chrVII	1073324	.	T	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=43.25;MQ0=0;QD=21.96;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1504,156,0
chrVII	1073366	.	T	A	858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=50;Dels=0.00;FS=11.047;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;MQRankSum=-2.614;QD=17.16;ReadPosRankSum=2.860;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:3,47:50:93:891,93,0
chrVII	1073371	.	C	T	858	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.90;MQ0=0;QD=17.87;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:891,96,0
chrVII	1073426	.	G	T	2190	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=24.33;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2223,231,0
chrVII	1073467	.	G	A	2241	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.5902;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=22.64;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,96:99:99:2274,240,0
chrVII	1073551	.	A	T	2505	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=22.37;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2538,264,0
chrVII	1073621	.	T	G	1157	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=13.00;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1190,126,0
chrVII	1073622	.	T	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=13.03;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1154,126,0
chrVII	1073680	.	G	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.98;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1058,111,0
chrVII	1073763	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.74;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1889,204,0
chrVII	1073844	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.1349;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=19.51;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1945,204,0
chrVII	1073875	.	T	A	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.827;HaplotypeScore=4.6432;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-0.693;QD=21.50;ReadPosRankSum=1.683;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1538,162,0
chrVII	1074147	.	G	C	820	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.43;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:93:853,93,0
chrVII	1074275	.	A	G	1108	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.78;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1141,126,0
chrVII	1074289	.	G	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.6430;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=19.12;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1257,138,0
chrVII	1074352	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.29;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1737,180,0
chrVII	1074353	.	A	T	1598	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.170;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-1.398;QD=19.02;ReadPosRankSum=1.690;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1631,177,0
chrVII	1074439	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.63;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1255,138,0
chrVII	1074472	.	T	C	1591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.070;QD=23.40;ReadPosRankSum=1.681;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1624,177,0
chrVII	1074589	.	G	C	1136	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.85;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1169,129,0
chrVII	1074660	.	A	C	834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.943;DP=53;Dels=0.00;FS=2.419;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=0.943;QD=15.74;ReadPosRankSum=2.329;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:3,50:53:99:867,99,0
chrVII	1074661	.	C	A	872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=7.194;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=0.357;QD=16.77;ReadPosRankSum=1.546;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:905,102,0
chrVII	1074672	.	C	G	915	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=15.51;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:948,105,0
chrVII	1074691	.	T	C	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;MQRankSum=0.226;QD=15.86;ReadPosRankSum=1.682;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1127,123,0
chrVII	1074739	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=5.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=0.909;QD=17.00;ReadPosRankSum=1.689;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1410,153,0
chrVII	1074817	.	C	T	2070	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.79;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2103,222,0
chrVII	1074995	.	G	A	898	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.90;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:931,99,0
chrVII	1075132	.	C	T	1443	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=17.18;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1476,156,0
chrVII	1075138	.	T	C	1458	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=18.22;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1491,159,0
chrVII	1075139	.	T	C	1417	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.287;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;MQRankSum=-0.278;QD=17.49;ReadPosRankSum=1.689;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1450,156,0
chrVII	1075157	.	T	C	1167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.445;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;MQRankSum=-1.650;QD=13.89;ReadPosRankSum=1.691;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1200,132,0
chrVII	1075171	.	T	C	1039	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;QD=12.08;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1072,117,0
chrVII	1075291	.	T	G	1692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.593;QD=21.69;ReadPosRankSum=1.687;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1725,183,0
chrVII	1075322	.	A	T	1094	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.37;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1127,120,0
chrVII	1075323	.	A	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.41;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1130,120,0
chrVII	1075431	.	C	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.54;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1327,138,0
chrVII	1075509	.	T	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=15.87;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1176,129,0
chrVII	1075526	.	C	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=16.76;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,67:70:99:1206,129,0
chrVII	1075581	.	A	G	823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;MQRankSum=-1.547;QD=14.44;ReadPosRankSum=1.670;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:96:856,96,0
chrVII	1075696	.	C	T	756	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=16.43;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:81:789,81,0
chrVII	1075820	.	C	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=22.56;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1364,141,0
chrVII	1075964	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=24.82;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1249,129,0
chrVII	1077942	.	G	A	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=3.6202;MLEAC=2;MLEAF=1.00;MQ=15.85;MQ0=11;QD=1.17;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:10,7:17:6:51,6,0
chrVII	1077997	.	C	T	470	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=6;QD=18.08;SB=-6.571e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:51:503,51,0
chrVII	1078507	.	C	T	161.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=26;Dels=0.00;FS=10.414;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=14;MQRankSum=-0.474;QD=6.19;ReadPosRankSum=1.423;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:6,20:26:21:194,21,0
chrVII	1078515	.	C	T	81.51	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.65;MQ0=14;QD=4.08;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:12:114,12,0
chrVII	1078573	.	G	A	56.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=1;QD=14.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:9:89,9,0
chrVII	1078645	.	A	G	1043	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=3;QD=22.19;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1076,114,0
chrVII	1078750	.	T	C	2101	filter	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=6;QD=22.84;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2134,228,0
chrVII	1078862	.	C	T	606	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=6;QD=17.82;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:69:639,69,0
chrVII	1078949	.	A	G	911	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.27;MQ0=5;QD=16.87;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:944,102,0
chrVII	1079039	.	A	G	1718	filter	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.8278;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=4;QD=16.52;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1751,192,0
chrVII	1079086	.	A	G	2317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=2;MQRankSum=-0.390;QD=20.50;ReadPosRankSum=1.701;SB=-1.419e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2350,252,0
chrVII	1079115	.	T	C	2104	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=3;QD=19.85;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2137,237,0
chrVII	1079145	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.25;MQ0=2;QD=18.41;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1524,162,0
chrVII	1079171	.	A	T	884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=61;Dels=0.00;FS=3.237;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=1;MQRankSum=0.264;QD=14.49;ReadPosRankSum=1.674;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:96:917,96,0
chrVII	1079183	.	T	C	875	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=4;MQRankSum=-1.417;QD=14.58;ReadPosRankSum=1.669;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:96:908,96,0
chrVII	1079216	.	T	C	1210	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=4;MQRankSum=-0.708;QD=15.71;ReadPosRankSum=1.683;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,74:77:99:1243,141,0
chrVII	1079233	.	A	T	1306	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=81;Dels=0.00;FS=6.021;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=5;MQRankSum=1.231;QD=16.12;ReadPosRankSum=1.641;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1339,144,0
chrVII	1079240	.	C	G	1559	filter	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=6;QD=18.34;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1592,174,0
chrVII	1079344	.	A	G	622	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.95;MQ0=14;QD=12.44;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:72:655,72,0
chrVII	1079375	.	A	C	639	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=23.00;MQ0=18;QD=13.04;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:72:672,72,0
chrVII	1079419	.	A	G	1082	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.94;MQ0=7;QD=18.34;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1115,120,0
chrVII	1079466	.	T	G	900	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=17.31;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:99:933,102,0
chrVII	1079517	.	G	A	1528	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.93;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1561,165,0
chrVII	1079763	.	T	A	893	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=3;QD=19.84;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:926,99,0
chrVII	1079904	.	A	G	1349	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=1;QD=23.26;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1382,150,0
chrVII	1080123	.	C	A	338	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.33;MQ0=20;QD=9.39;SB=-7.475e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:39:371,39,0
chrVII	1080548	.	T	C	217.01	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.26;MQ0=13;QD=8.68;SB=-1.514e-02	GT:AD:DP:GQ:PL	1/1:6,18:25:27:250,27,0
chrVII	1080569	.	G	C	129.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=20;Dels=0.00;FS=9.542;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.10;MQ0=11;MQRankSum=0.751;QD=6.46;ReadPosRankSum=-0.751;SB=-7.359e-02	GT:AD:DP:GQ:PL	1/1:11,9:20:18:162,18,0
chrVII	1080688	.	C	T	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.20;MQ0=3;QD=1.55;SB=-8.751e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:6:56,6,0
chrVII	1080758	.	C	G	1167	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=40.07;MQ0=5;QD=16.21;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1200,132,0
chrVII	1080801	.	C	T	1506	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.643;DP=74;Dels=0.00;FS=21.954;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=4;MQRankSum=3.152;QD=20.35;ReadPosRankSum=-1.586;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:11,63:74:53:1539,53,0
chrVII	1080931	.	A	C	762	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.40;MQ0=8;QD=19.05;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:795,84,0
chrVII	1080936	.	T	C	644	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=8;QD=18.40;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:72:677,72,0
chrVII	1080947	.	C	T	603	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=10;QD=17.23;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:66:636,66,0
chrVII	1081137	.	G	A	691	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=8;QD=14.10;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:2,46:49:75:724,75,0
chrVII	1081188	.	G	C	1338	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=3;QD=18.33;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1371,147,0
chrVII	1081221	.	T	C	1892	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=37.83;MQ0=3;QD=21.50;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1925,213,0
chrVII	1081252	.	C	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=3;QD=21.88;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1718,189,0
chrVII	1081262	.	T	C	1641	filter	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=4;QD=21.59;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,72:76:99:1674,180,0
chrVII	1081363	.	G	A	226.01	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.71;MQ0=8;QD=8.37;SB=-2.202e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:27:259,27,0
chrVII	1081365	.	A	G	236.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.822;DP=27;Dels=0.00;FS=8.016;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.71;MQ0=8;MQRankSum=1.552;QD=8.74;ReadPosRankSum=0.639;SB=-2.202e+01	GT:AD:DP:GQ:PL	1/1:9,18:27:27:269,27,0
chrVII	1081376	.	G	T	289	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.131;DP=31;Dels=0.00;FS=6.628;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.62;MQ0=8;MQRankSum=1.583;QD=9.32;ReadPosRankSum=1.583;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:9,22:31:33:322,33,0
chrVII	1081379	.	C	T	275	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=7;QD=9.17;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:7,23:30:33:308,33,0
chrVII	1081382	.	A	G	270	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=6;QD=9.31;SB=-1.010e+02	GT:AD:DP:GQ:PL	1/1:6,23:29:33:303,33,0
chrVII	1081407	.	G	A	362	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=8;QD=10.34;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:8,27:35:42:395,42,0
chrVII	1081409	.	G	A	376	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=7;QD=11.06;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:7,27:34:42:409,42,0
chrVII	1081440	.	G	A	222.01	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.89;MQ0=7;QD=6.53;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:7,27:34:27:255,27,0
chrVII	1081450	.	G	A	189.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.98;MQ0=6;QD=6.30;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:6,24:30:24:222,24,0
chrVII	1081456	.	C	T	144.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.89;MQ0=4;QD=6.27;SB=-1.781e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:18:177,18,0
chrVII	1081457	.	T	C	129.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.89;MQ0=4;QD=5.61;SB=-1.601e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:18:162,18,0
chrVII	1081460	.	T	G	133.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.89;MQ0=4;QD=5.79;SB=-1.651e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:18:166,18,0
chrVII	1081461	.	T	G	129.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.89;MQ0=4;QD=5.61;SB=-1.661e+02	GT:AD:DP:GQ:PL	1/1:4,19:23:18:162,18,0
chrVII	1081465	.	G	C	137.13	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.99;MQ0=6;QD=5.49;SB=-1.721e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:18:170,18,0
chrVII	1081478	.	A	G	380	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=7;QD=8.84;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:4,39:43:45:413,45,0
chrVII	1081493	.	A	G	715	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386;DP=55;Dels=0.00;FS=5.229;HaplotypeScore=2.2013;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=5;MQRankSum=1.247;QD=13.00;ReadPosRankSum=1.109;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:3,52:55:87:748,87,0
chrVII	1081530	.	T	A	1057	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.57;MQ0=5;QD=18.22;SB=-1.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1090,114,0
chrVII	1081539	.	C	T	1211	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.246;DP=62;Dels=0.00;FS=7.559;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=5;MQRankSum=1.307;QD=19.53;ReadPosRankSum=-1.368;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1244,129,0
chrVII	1081574	.	G	C	939	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=60;Dels=0.00;FS=6.185;HaplotypeScore=7.2058;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=6;MQRankSum=1.668;QD=15.65;ReadPosRankSum=0.706;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:972,108,0
chrVII	1081629	.	A	G	599	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=24.97;MQ0=15;MQRankSum=-0.050;QD=11.98;ReadPosRankSum=1.634;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:6,44:50:69:632,69,0
chrVII	1081661	.	C	T	327.42	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=22.05;MQ0=19;MQRankSum=0.514;QD=7.61;ReadPosRankSum=0.628;SB=-1.072e+02	GT:AD:DP:GQ:PL	0/1:10,31:43:7:357,0,7
chrVII	1081734	.	A	G	196.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.192;DP=37;Dels=0.00;FS=7.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.13;MQ0=10;MQRankSum=1.363;QD=5.30;ReadPosRankSum=0.077;SB=-1.350e+02	GT:AD:DP:GQ:PL	0/1:15,22:37:99:226,0,144
chrVII	1081752	.	C	G	231.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;DP=42;Dels=0.00;FS=1.708;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=13;MQRankSum=1.579;QD=5.50;ReadPosRankSum=-0.825;SB=-1.070e+02	GT:AD:DP:GQ:PL	0/1:17,24:42:99:261,0,116
chrVII	1081767	.	C	T	300.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.359;DP=47;Dels=0.00;FS=4.117;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=12;MQRankSum=1.080;QD=6.38;ReadPosRankSum=-2.180;SB=-1.900e+02	GT:AD:DP:GQ:PL	0/1:17,30:47:99:330,0,104
chrVII	1081791	.	C	T	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;DP=65;Dels=0.00;FS=10.792;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.55;MQ0=15;MQRankSum=-1.358;QD=0.35;ReadPosRankSum=-1.090;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,19:65:53:53,0,582
chrVII	1081803	.	G	A	613.06	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;DP=64;Dels=0.00;FS=8.007;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=34.37;MQ0=14;MQRankSum=1.106;QD=9.58;ReadPosRankSum=2.857;SB=-3.260e+02	GT:AD:DP:GQ:PL	0/1:18,45:64:16:643,0,16
chrVII	1081815	.	T	C	789	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=15;QD=12.14;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:90:822,90,0
chrVII	1081887	.	G	A	528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=1;MQRankSum=1.625;QD=16.00;ReadPosRankSum=0.000;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:2,31:33:66:561,66,0
chrVII	1081908	.	A	T	414	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;MQRankSum=1.569;QD=19.71;ReadPosRankSum=1.569;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:1,20:21:51:447,51,0
chrVII	1081910	.	C	T	402	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=20.10;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:51:435,51,0
chrVII	1081912	.	C	T	407	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=20.35;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:51:440,51,0
chrVII	1081936	.	A	G	257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.300;DP=22;Dels=0.00;FS=2.969;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=0;MQRankSum=0.060;QD=11.68;ReadPosRankSum=1.378;SB=-1.550e+02	GT:AD:DP:GQ:PL	1/1:3,19:22:36:290,36,0
chrVII	1081961	.	T	G	503	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.622;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.6318;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;MQRankSum=0.277;QD=16.77;ReadPosRankSum=-1.313;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:3,27:30:60:536,60,0
chrVII	1081991	.	G	A	563	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=14.44;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:66:596,66,0
chrVII	1082001	.	A	G	571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.232;DP=44;Dels=0.00;FS=11.716;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;MQRankSum=2.924;QD=12.98;ReadPosRankSum=0.530;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:6,38:44:53:604,53,0
chrVII	1082043	.	A	G	490.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;DP=69;Dels=0.00;FS=5.433;HaplotypeScore=8.6373;MLEAC=1;MLEAF=0.500;MQ=34.98;MQ0=3;MQRankSum=1.239;QD=7.10;ReadPosRankSum=2.316;SB=-3.010e+02	GT:AD:DP:GQ:PL	0/1:31,38:69:99:520,0,232
chrVII	1082123	.	A	T	555.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;DP=87;Dels=0.00;FS=15.075;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=13;MQRankSum=-1.530;QD=6.38;ReadPosRankSum=1.003;SB=-2.650e+02	GT:AD:DP:GQ:PL	0/1:43,44:87:99:585,0,586
chrVII	1082143	.	T	C	564.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;DP=94;Dels=0.00;FS=39.142;HaplotypeScore=9.1028;MLEAC=1;MLEAF=0.500;MQ=43.64;MQ0=17;MQRankSum=-1.961;QD=6.00;ReadPosRankSum=1.961;SB=-3.070e+02	GT:AD:DP:GQ:PL	0/1:48,45:94:99:594,0,652
chrVII	1082181	.	A	G	806.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.522;DP=105;Dels=0.00;FS=77.240;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=45.88;MQ0=16;MQRankSum=-1.835;QD=7.68;ReadPosRankSum=-2.591;SB=-4.720e+02	GT:AD:DP:GQ:PL	0/1:50,55:105:99:836,0,673
chrVII	1082206	.	G	A	681.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;DP=92;Dels=0.00;FS=48.179;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=45.40;MQ0=11;MQRankSum=-0.744;QD=7.40;ReadPosRankSum=1.057;SB=-4.390e+02	GT:AD:DP:GQ:PL	0/1:46,46:92:99:711,0,684
chrVII	1082268	.	T	C	794	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=1;QD=16.54;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:96:827,96,0
chrVII	1082282	.	T	C	161.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=51;Dels=0.00;FS=44.002;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=40.69;MQ0=0;MQRankSum=-5.229;QD=3.16;ReadPosRankSum=2.534;SB=-1.880e+02	GT:AD:DP:GQ:PL	0/1:25,26:51:99:191,0,529
chrVII	1082284	.	A	T	162.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;DP=49;Dels=0.00;FS=38.152;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=40.98;MQ0=0;MQRankSum=-5.397;QD=3.31;ReadPosRankSum=1.498;SB=-1.920e+02	GT:AD:DP:GQ:PL	0/1:22,27:49:99:192,0,514
chrVII	1082290	.	C	T	169.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.786;DP=47;Dels=0.00;FS=33.978;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=40.96;MQ0=0;MQRankSum=-5.261;QD=3.60;ReadPosRankSum=0.893;SB=-1.740e+02	GT:AD:DP:GQ:PL	0/1:20,27:47:99:199,0,422
chrVII	1082307	.	G	A	116.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;DP=58;Dels=0.00;FS=20.933;HaplotypeScore=8.9194;MLEAC=1;MLEAF=0.500;MQ=37.03;MQ0=1;MQRankSum=-4.790;QD=2.00;ReadPosRankSum=0.382;SB=-2.809e+02	GT:AD:DP:GQ:PL	0/1:24,34:58:99:146,0,449
chrVII	1082317	.	G	A	143.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.207;DP=75;Dels=0.00;FS=3.621;HaplotypeScore=23.6474;MLEAC=1;MLEAF=0.500;MQ=33.62;MQ0=1;MQRankSum=-2.213;QD=1.91;ReadPosRankSum=2.016;SB=-1.700e+02	GT:AD:DP:GQ:PL	0/1:44,31:75:99:173,0,433
chrVII	1082318	.	C	T	57.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;DP=81;Dels=0.00;FS=12.588;HaplotypeScore=20.7635;MLEAC=1;MLEAF=0.500;MQ=33.65;MQ0=2;MQRankSum=-3.986;QD=0.70;ReadPosRankSum=-2.453;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,14:81:87:87,0,606
chrVII	1082346	.	A	G	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910;DP=102;Dels=0.00;FS=18.896;HaplotypeScore=21.8877;MLEAC=1;MLEAF=0.500;MQ=32.40;MQ0=3;MQRankSum=-1.302;QD=0.36;ReadPosRankSum=1.525;SB=-1.240e+02	GT:AD:DP:GQ:PL	0/1:74,28:102:67:67,0,1038
chrVII	1082353	.	G	A	21.04	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.219;DP=105;Dels=0.00;FS=26.477;HaplotypeScore=44.0739;MLEAC=1;MLEAF=0.500;MQ=31.25;MQ0=3;MQRankSum=-0.152;QD=0.20;ReadPosRankSum=-1.891;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,16:105:51:51,0,1087
chrVII	1082357	.	C	T	13.22	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;DP=108;Dels=0.00;FS=14.691;HaplotypeScore=29.1455;MLEAC=1;MLEAF=0.500;MQ=31.07;MQ0=3;MQRankSum=-4.388;QD=0.12;ReadPosRankSum=4.473;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:93,15:108:43:43,0,1098
chrVII	1082358	.	G	A	322.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.971;DP=108;Dels=0.00;FS=48.593;HaplotypeScore=29.1455;MLEAC=1;MLEAF=0.500;MQ=30.66;MQ0=3;MQRankSum=-3.607;QD=2.98;ReadPosRankSum=2.716;SB=-2.040e+02	GT:AD:DP:GQ:PL	0/1:61,47:108:99:352,0,779
chrVII	1082373	.	A	G	160.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.019;DP=120;Dels=0.00;FS=22.952;HaplotypeScore=116.4127;MLEAC=1;MLEAF=0.500;MQ=29.88;MQ0=3;MQRankSum=-0.482;QD=1.33;ReadPosRankSum=-2.120;SB=-1.130e+02	GT:AD:DP:GQ:PL	0/1:85,34:120:99:190,0,1054
chrVII	1082375	.	G	T	152.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.734;DP=121;Dels=0.00;FS=32.629;HaplotypeScore=124.2859;MLEAC=1;MLEAF=0.500;MQ=29.79;MQ0=3;MQRankSum=0.453;QD=1.26;ReadPosRankSum=3.761;SB=-1.201e+01	GT:AD:DP:GQ:PL	0/1:84,36:121:99:182,0,1004
chrVII	1082380	.	G	A	183.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;DP=120;Dels=0.00;FS=38.899;HaplotypeScore=137.2081;MLEAC=1;MLEAF=0.500;MQ=29.67;MQ0=3;MQRankSum=0.509;QD=1.53;ReadPosRankSum=4.104;SB=-1.101e+01	GT:AD:DP:GQ:PL	0/1:83,37:120:99:213,0,1005
chrVII	1082396	.	T	C	195.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752;DP=128;Dels=0.00;FS=58.460;HaplotypeScore=29.0789;MLEAC=1;MLEAF=0.500;MQ=30.29;MQ0=3;MQRankSum=0.750;QD=1.52;ReadPosRankSum=0.146;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:100,28:128:99:225,0,1039
chrVII	1082419	.	G	A	328.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;DP=101;Dels=0.00;FS=13.317;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.58;MQ0=6;MQRankSum=0.658;QD=3.25;ReadPosRankSum=-0.736;SB=-1.800e+02	GT:AD:DP:GQ:PL	0/1:68,33:101:99:358,0,659
chrVII	1082442	.	T	C	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.763;DP=85;Dels=0.00;FS=102.121;HaplotypeScore=4.6774;MLEAC=1;MLEAF=0.500;MQ=29.12;MQ0=7;MQRankSum=-0.705;QD=0.41;ReadPosRankSum=0.998;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,30:85:65:65,0,651
chrVII	1082469	.	A	G	587.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;DP=86;Dels=0.00;FS=45.138;HaplotypeScore=42.1395;MLEAC=1;MLEAF=0.500;MQ=33.21;MQ0=7;MQRankSum=-0.476;QD=6.83;ReadPosRankSum=2.173;SB=-1.650e+02	GT:AD:DP:GQ:PL	0/1:31,52:86:99:617,0,304
chrVII	1082477	.	C	T	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DP=90;Dels=0.00;FS=67.531;HaplotypeScore=69.3497;MLEAC=1;MLEAF=0.500;MQ=36.00;MQ0=7;MQRankSum=-1.642;QD=0.20;ReadPosRankSum=-2.155;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,24:90:48:48,0,862
chrVII	1082592	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.243;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=13.1817;MLEAC=2;MLEAF=1.00;MQ=44.63;MQ0=1;MQRankSum=1.752;QD=13.93;ReadPosRankSum=-0.793;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:5,87:92:73:1315,73,0
chrVII	1082711	.	T	C	166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;DP=130;Dels=0.00;FS=9.340;HaplotypeScore=22.3350;MLEAC=1;MLEAF=0.500;MQ=28.81;MQ0=0;MQRankSum=-3.155;QD=1.28;ReadPosRankSum=-1.259;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:90,40:130:99:196,0,1052
chrVII	1082775	.	A	G	1980	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=25.33;MQ0=1;QD=14.78;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2013,219,0
chrVII	1082819	.	T	C	2323	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.55;MQ0=6;MQRankSum=-0.233;QD=20.93;ReadPosRankSum=1.666;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,109:111:99:2356,252,0
chrVII	1082858	.	G	T	395.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;DP=101;Dels=0.00;FS=4.134;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=32.57;MQ0=8;MQRankSum=-3.328;QD=3.91;ReadPosRankSum=0.430;SB=-3.501e+01	GT:AD:DP:GQ:PL	0/1:63,38:101:99:425,0,1036
chrVII	1082879	.	G	A	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;DP=80;Dels=0.00;FS=4.874;HaplotypeScore=18.9870;MLEAC=1;MLEAF=0.500;MQ=36.12;MQ0=5;MQRankSum=-0.751;QD=0.25;ReadPosRankSum=-1.557;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:68,11:80:50:50,0,919
chrVII	1082883	.	A	G	90.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;DP=80;Dels=0.00;FS=5.215;HaplotypeScore=21.8470;MLEAC=1;MLEAF=0.500;MQ=36.90;MQ0=5;MQRankSum=-4.760;QD=1.13;ReadPosRankSum=0.252;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,23:80:99:120,0,966
chrVII	1082929	.	T	A	636.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.903;DP=80;Dels=0.00;FS=7.480;HaplotypeScore=22.7516;MLEAC=1;MLEAF=0.500;MQ=34.31;MQ0=1;MQRankSum=4.090;QD=7.95;ReadPosRankSum=2.791;SB=-3.930e+02	GT:AD:DP:GQ:PL	0/1:37,43:80:99:666,0,181
chrVII	1082939	.	A	T	153.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DP=76;Dels=0.00;FS=27.790;HaplotypeScore=35.1612;MLEAC=1;MLEAF=0.500;MQ=33.53;MQ0=1;MQRankSum=-0.855;QD=2.01;ReadPosRankSum=0.000;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:52,21:76:99:183,0,673
chrVII	1082949	.	T	C	136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;DP=75;Dels=0.00;FS=33.086;HaplotypeScore=44.3239;MLEAC=1;MLEAF=0.500;MQ=32.74;MQ0=0;MQRankSum=-0.329;QD=1.81;ReadPosRankSum=2.989;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,20:75:99:166,0,675
chrVII	1082966	.	G	A	357.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.472;DP=83;Dels=0.00;FS=8.169;HaplotypeScore=31.4692;MLEAC=1;MLEAF=0.500;MQ=30.63;MQ0=0;MQRankSum=2.258;QD=4.30;ReadPosRankSum=-2.615;SB=-1.770e+02	GT:AD:DP:GQ:PL	0/1:58,25:83:99:387,0,290
chrVII	1082972	.	G	A	684	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=49.2479;MLEAC=2;MLEAF=1.00;MQ=29.45;MQ0=0;QD=9.00;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:78:717,78,0
chrVII	1082991	.	G	A	229.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;DP=58;Dels=0.03;FS=7.241;HaplotypeScore=47.0895;MLEAC=1;MLEAF=0.500;MQ=27.15;MQ0=0;MQRankSum=-1.348;QD=3.95;ReadPosRankSum=-0.729;SB=-3.861e+02	GT:AD:DP:GQ:PL	0/1:12,44:56:13:259,0,13
chrVII	1083002	.	G	T	261	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=45.2886;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=0;QD=5.12;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,32:51:33:294,33,0
chrVII	1083007	.	A	G	127.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;DP=49;Dels=0.00;FS=86.091;HaplotypeScore=45.9537;MLEAC=1;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=-1.161;QD=2.59;ReadPosRankSum=2.050;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:15,34:49:60:157,0,60
chrVII	1083057	.	A	G	204.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=0;MQRankSum=-1.417;QD=4.64;ReadPosRankSum=1.654;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:27:237,27,0
chrVII	1083086	.	G	A	160.06	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=0;QD=8.42;SB=-4.907e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:21:193,21,0
chrVII	1083095	.	T	C	126.13	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.85;MQ0=0;QD=7.88;SB=-2.212e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:18:159,18,0
chrVII	1083104	.	G	A	37.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DP=36;Dels=0.00;FS=4.491;HaplotypeScore=8.9665;MLEAC=1;MLEAF=0.500;MQ=22.25;MQ0=0;MQRankSum=1.199;QD=1.03;ReadPosRankSum=2.838;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:29,7:36:33:67,0,33
chrVII	1083106	.	A	C	69.55	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=8.9665;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=0;QD=1.99;SB=6.51	GT:AD:DP:GQ:PL	1/1:0,11:35:12:102,12,0
chrVII	1083108	.	G	C	58.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=8.9665;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=0;MQRankSum=-0.818;QD=1.45;ReadPosRankSum=4.816;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:29,11:40:72:88,0,72
chrVII	1083111	.	T	C	50.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.301;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=8.9665;MLEAC=1;MLEAF=0.500;MQ=23.48;MQ0=0;MQRankSum=-0.042;QD=1.16;ReadPosRankSum=4.885;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,11:43:80:80,0,102
chrVII	1083115	.	A	G	94.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.669;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.4838;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=0;MQRankSum=1.189;QD=2.09;ReadPosRankSum=-1.966;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:13,32:45:81:124,0,81
chrVII	1083116	.	C	G	93.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.4838;MLEAC=1;MLEAF=0.500;MQ=23.50;MQ0=0;MQRankSum=0.338;QD=2.07;ReadPosRankSum=-1.816;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:13,32:45:79:123,0,79
chrVII	1083121	.	C	T	31.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=1;MLEAF=0.500;MQ=24.85;MQ0=0;MQRankSum=0.041;QD=0.48;ReadPosRankSum=-0.389;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,15:64:61:61,0,346
chrVII	1083127	.	A	G	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5009;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=0;MQRankSum=1.797;QD=0.34;ReadPosRankSum=-2.692;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:54,14:68:53:53,0,383
chrVII	1083130	.	T	C	325.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.5009;MLEAC=1;MLEAF=0.500;MQ=25.26;MQ0=0;MQRankSum=-0.989;QD=4.71;ReadPosRankSum=2.269;SB=-4.801e+01	GT:AD:DP:GQ:PL	0/1:14,54:69:67:355,0,67
chrVII	1083133	.	C	A	411.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.983;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5009;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=0;MQRankSum=-1.602;QD=6.04;ReadPosRankSum=1.307;SB=-7.201e+01	GT:AD:DP:GQ:PL	0/1:10,58:68:68:441,0,68
chrVII	1083136	.	A	G	567	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=25.80;MQ0=0;MQRankSum=-0.326;QD=8.22;ReadPosRankSum=1.682;SB=-9.801e+01	GT:AD:DP:GQ:PL	1/1:1,68:69:66:600,66,0
chrVII	1083137	.	T	C	12.27	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=0;MQRankSum=2.298;QD=0.17;ReadPosRankSum=-0.249;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,8:71:42:42,0,411
chrVII	1083143	.	T	A	628	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=8.85;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:72:661,72,0
chrVII	1083148	.	T	C	611	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.20;MQ0=0;QD=9.12;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:72:644,72,0
chrVII	1083163	.	T	C	530.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=34.3649;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=0;MQRankSum=0.876;QD=7.07;ReadPosRankSum=0.337;SB=-1.200e+02	GT:AD:DP:GQ:PL	0/1:11,64:75:73:560,0,73
chrVII	1083172	.	A	G	778	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.6913;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;QD=10.66;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:87:811,87,0
chrVII	1083177	.	A	T	174.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=79;Dels=0.00;FS=20.030;HaplotypeScore=12.8773;MLEAC=1;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=-1.163;QD=2.20;ReadPosRankSum=1.182;SB=-1.390e+02	GT:AD:DP:GQ:PL	0/1:41,38:79:99:204,0,501
chrVII	1083181	.	C	T	890	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=13.8731;MLEAC=2;MLEAF=1.00;MQ=27.18;MQ0=0;QD=11.56;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:96:923,96,0
chrVII	1083184	.	G	A	560.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;DP=77;Dels=0.00;FS=2.392;HaplotypeScore=14.8678;MLEAC=1;MLEAF=0.500;MQ=27.18;MQ0=0;MQRankSum=0.804;QD=7.27;ReadPosRankSum=0.637;SB=-1.080e+02	GT:AD:DP:GQ:PL	0/1:15,62:77:94:590,0,94
chrVII	1083193	.	G	A	905	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9874;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;QD=12.07;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:938,99,0
chrVII	1083197	.	C	A	457.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;DP=62;Dels=0.00;FS=5.082;HaplotypeScore=2.9874;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=0;MQRankSum=0.063;QD=7.37;ReadPosRankSum=0.852;SB=-1.080e+02	GT:AD:DP:GQ:PL	0/1:17,45:62:99:487,0,150
chrVII	1083199	.	T	G	699	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=63;Dels=0.00;FS=19.258;HaplotypeScore=37.4086;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;MQRankSum=0.268;QD=11.10;ReadPosRankSum=2.368;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:2,58:63:78:732,78,0
chrVII	1083201	.	C	G	729	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=37.4086;MLEAC=2;MLEAF=1.00;MQ=27.73;MQ0=0;QD=11.57;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:81:762,81,0
chrVII	1083207	.	G	T	464.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;DP=62;Dels=0.00;FS=10.175;HaplotypeScore=40.3082;MLEAC=1;MLEAF=0.500;MQ=27.38;MQ0=0;MQRankSum=-0.137;QD=7.48;ReadPosRankSum=-1.070;SB=-1.790e+02	GT:AD:DP:GQ:PL	0/1:16,46:62:99:494,0,134
chrVII	1083229	.	G	C	248.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.000;DP=43;Dels=0.00;FS=14.936;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.87;MQ0=0;MQRankSum=0.726;QD=5.77;ReadPosRankSum=0.185;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,18:43:99:278,0,179
chrVII	1083231	.	G	C	247.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;DP=40;Dels=0.00;FS=16.148;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=1.047;QD=6.18;ReadPosRankSum=-0.231;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,18:40:99:277,0,153
chrVII	1083235	.	G	A	174.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.587;DP=34;Dels=0.00;FS=12.013;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.86;MQ0=0;MQRankSum=0.402;QD=5.12;ReadPosRankSum=0.507;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,14:34:99:204,0,135
chrVII	1083237	.	G	T	144.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.770;DP=33;Dels=0.00;FS=12.409;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=0.601;QD=4.36;ReadPosRankSum=0.528;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:19,14:33:99:174,0,140
chrVII	1083238	.	A	G	380	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.82;MQ0=0;MQRankSum=-0.578;QD=11.52;ReadPosRankSum=1.628;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:48:413,48,0
chrVII	1083240	.	C	T	161.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;DP=32;Dels=0.00;FS=12.799;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=27.78;MQ0=0;MQRankSum=1.159;QD=5.03;ReadPosRankSum=0.247;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,14:32:99:191,0,141
chrVII	1083244	.	C	G	194.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DP=36;Dels=0.00;FS=13.424;HaplotypeScore=1.7074;MLEAC=1;MLEAF=0.500;MQ=27.65;MQ0=0;MQRankSum=-0.459;QD=5.39;ReadPosRankSum=-0.427;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,18:36:99:224,0,112
chrVII	1083249	.	A	G	193.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;DP=35;Dels=0.00;FS=17.198;HaplotypeScore=1.7074;MLEAC=1;MLEAF=0.500;MQ=27.61;MQ0=0;MQRankSum=1.040;QD=5.51;ReadPosRankSum=0.083;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:17,18:35:85:223,0,85
chrVII	1083251	.	C	T	342	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=0;QD=10.69;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:42:375,42,0
chrVII	1083253	.	T	G	183.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;DP=32;Dels=0.00;FS=20.443;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=27.47;MQ0=0;MQRankSum=-0.126;QD=5.72;ReadPosRankSum=-0.377;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:14,17:32:70:213,0,70
chrVII	1083282	.	T	C	175.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550;DP=23;Dels=0.00;FS=21.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.29;MQ0=0;MQRankSum=1.581;QD=7.61;ReadPosRankSum=3.389;SB=-5.860e-03	GT:AD:DP:GQ:PL	0/1:8,15:23:49:205,0,49
chrVII	1083294	.	G	A	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;DP=22;Dels=0.00;FS=23.201;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.75;MQ0=0;MQRankSum=-0.282;QD=0.56;ReadPosRankSum=-3.525;SB=-3.050e+01	GT:AD:DP:GQ:PL	0/1:15,7:22:42:42,0,175
chrVII	1083308	.	A	G	183.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;DP=41;Dels=0.00;FS=9.294;HaplotypeScore=14.6510;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=0;MQRankSum=-0.092;QD=4.46;ReadPosRankSum=-2.483;SB=-4.301e+01	GT:AD:DP:GQ:PL	0/1:18,23:41:99:213,0,184
chrVII	1083316	.	A	T	17.09	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;DP=58;Dels=0.00;FS=15.480;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=27.66;MQ0=0;MQRankSum=1.390;QD=0.29;ReadPosRankSum=0.954;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,14:58:47:47,0,713
chrVII	1083321	.	G	A	758.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.099;DP=57;Dels=0.00;FS=13.024;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=1.569;QD=13.30;ReadPosRankSum=0.599;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:13,44:57:24:791,24,0
chrVII	1083364	.	T	C	703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.064;DP=55;Dels=0.00;FS=2.409;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=0;MQRankSum=-0.629;QD=12.78;ReadPosRankSum=3.411;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:5,50:55:64:736,64,0
chrVII	1083404	.	T	G	143.06	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=0;QD=7.53;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:0,18:19:21:176,21,0
chrVII	1083495	.	A	G	97.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=7;Dels=0.00;FS=5.441;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.19;MQ0=0;MQRankSum=0.742;QD=13.88;ReadPosRankSum=-0.742;SB=-2.188e+01	GT:AD:DP:GQ:PL	1/1:1,6:7:18:130,18,0
chrVII	1083498	.	A	G	97.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.29;MQ0=0;QD=12.14;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:130,18,0
chrVII	1083520	.	T	C	162.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.778;DP=14;Dels=0.00;FS=7.549;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;MQRankSum=-1.868;QD=11.57;ReadPosRankSum=1.868;SB=-3.889e+01	GT:AD:DP:GQ:PL	1/1:3,11:14:27:195,27,0
chrVII	1083521	.	A	G	162.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;MQRankSum=-1.736;QD=11.57;ReadPosRankSum=0.000;SB=-4.048e+01	GT:AD:DP:GQ:PL	1/1:1,13:14:27:195,27,0
chrVII	1083530	.	A	G	227	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.739;DP=19;Dels=0.00;FS=2.350;HaplotypeScore=6.3395;MLEAC=2;MLEAF=1.00;MQ=18.03;MQ0=0;MQRankSum=-0.503;QD=11.95;ReadPosRankSum=0.503;SB=-6.488e+01	GT:AD:DP:GQ:PL	1/1:3,16:19:36:260,36,0
chrVII	1083601	.	A	C	151.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;DP=33;Dels=0.00;FS=27.668;HaplotypeScore=24.3283;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=0;MQRankSum=0.651;QD=4.58;ReadPosRankSum=0.525;SB=-4.733e-01	GT:AD:DP:GQ:PL	0/1:8,25:33:43:181,0,43
chrVII	1083602	.	G	A	21.04	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;DP=33;Dels=0.00;FS=2.555;HaplotypeScore=30.2455;MLEAC=1;MLEAF=0.500;MQ=24.60;MQ0=0;MQRankSum=-2.928;QD=0.64;ReadPosRankSum=-1.035;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:26,7:33:51:51,0,174
chrVII	1083605	.	A	G	13.22	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;DP=34;Dels=0.00;FS=46.663;HaplotypeScore=27.3253;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=0;MQRankSum=2.111;QD=0.39;ReadPosRankSum=0.722;SB=-2.501e+00	GT:AD:DP:GQ:PL	0/1:30,4:34:43:43,0,205
chrVII	1083611	.	G	A	19.06	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.101;DP=34;Dels=0.00;FS=8.302;HaplotypeScore=31.3951;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=0;MQRankSum=1.191;QD=0.56;ReadPosRankSum=0.926;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,10:34:49:49,0,208
chrVII	1083612	.	T	C	60.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537;DP=34;Dels=0.00;FS=46.815;HaplotypeScore=30.5566;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=0;MQRankSum=2.010;QD=1.76;ReadPosRankSum=-0.954;SB=-2.881e+00	GT:AD:DP:GQ:PL	0/1:26,8:34:90:90,0,166
chrVII	1083619	.	G	A	78.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DP=26;Dels=0.00;FS=18.266;HaplotypeScore=27.7178;MLEAC=1;MLEAF=0.500;MQ=26.45;MQ0=0;MQRankSum=1.436;QD=3.00;ReadPosRankSum=2.000;SB=-1.359e+02	GT:AD:DP:GQ:PL	0/1:13,13:26:72:108,0,72
chrVII	1083623	.	T	C	75.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DP=25;Dels=0.00;FS=18.266;HaplotypeScore=25.6114;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=0;MQRankSum=1.115;QD=3.00;ReadPosRankSum=1.441;SB=-1.509e+02	GT:AD:DP:GQ:PL	0/1:12,13:25:77:105,0,77
chrVII	1083624	.	A	T	209.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=25.6114;MLEAC=2;MLEAF=1.00;MQ=26.18;MQ0=0;QD=8.36;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:27:242,27,0
chrVII	1083625	.	G	C	73.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;DP=25;Dels=0.00;FS=44.031;HaplotypeScore=25.6114;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=0;MQRankSum=1.362;QD=2.92;ReadPosRankSum=-1.422;SB=-2.881e+00	GT:AD:DP:GQ:PL	0/1:18,7:25:81:103,0,81
chrVII	1083634	.	T	G	81.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DP=24;Dels=0.00;FS=17.910;HaplotypeScore=18.6707;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=0;MQRankSum=2.317;QD=3.38;ReadPosRankSum=-0.116;SB=-1.569e+02	GT:AD:DP:GQ:PL	0/1:11,13:24:58:111,0,58
chrVII	1083636	.	G	C	83.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=24;Dels=0.00;FS=17.910;HaplotypeScore=12.7154;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=0;MQRankSum=2.607;QD=3.46;ReadPosRankSum=-0.058;SB=-1.539e+02	GT:AD:DP:GQ:PL	0/1:11,13:24:58:113,0,58
chrVII	1083638	.	G	A	92.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DP=24;Dels=0.00;FS=17.910;HaplotypeScore=18.6666;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=0;MQRankSum=1.506;QD=3.83;ReadPosRankSum=-0.290;SB=-1.659e+02	GT:AD:DP:GQ:PL	0/1:11,13:24:36:122,0,36
chrVII	1083640	.	G	A	59.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;DP=33;Dels=0.00;FS=45.972;HaplotypeScore=31.4880;MLEAC=1;MLEAF=0.500;MQ=26.18;MQ0=0;MQRankSum=1.424;QD=1.79;ReadPosRankSum=1.657;SB=2.117e-03	GT:AD:DP:GQ:PL	0/1:27,6:33:79:89,0,79
chrVII	1083692	.	T	A	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;DP=57;Dels=0.00;FS=10.299;HaplotypeScore=86.5811;MLEAC=1;MLEAF=0.500;MQ=24.83;MQ0=2;MQRankSum=1.084;QD=0.40;ReadPosRankSum=0.973;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:41,16:57:53:53,0,64
chrVII	1083697	.	A	G	34.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.827;DP=52;Dels=0.00;FS=2.402;HaplotypeScore=85.6566;MLEAC=1;MLEAF=0.500;MQ=24.67;MQ0=2;MQRankSum=-0.609;QD=0.66;ReadPosRankSum=1.501;SB=-1.282e+02	GT:AD:DP:GQ:PL	0/1:8,44:52:11:64,0,11
chrVII	1083705	.	A	C	119.79	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=94.7932;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=2;MQRankSum=-0.315;QD=2.18;ReadPosRankSum=1.793;SB=-4.879e+01	GT:AD:DP:GQ:PL	0/1:7,46:55:4:149,0,4
chrVII	1083714	.	T	C	32.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.142;DP=57;Dels=0.00;FS=5.241;HaplotypeScore=52.6727;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=2;MQRankSum=0.100;QD=0.56;ReadPosRankSum=3.907;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:40,17:57:62:62,0,124
chrVII	1083715	.	G	A	64.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.930;DP=57;Dels=0.00;FS=5.150;HaplotypeScore=53.6392;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=2;MQRankSum=0.353;QD=1.12;ReadPosRankSum=-2.057;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:21,29:57:63:94,0,63
chrVII	1083717	.	C	A	30.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.091;DP=57;Dels=0.00;FS=5.241;HaplotypeScore=43.7968;MLEAC=1;MLEAF=0.500;MQ=24.33;MQ0=2;MQRankSum=0.774;QD=0.53;ReadPosRankSum=3.743;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:40,17:57:60:60,0,108
chrVII	1083725	.	C	T	144.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=16.3653;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=2;QD=3.35;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,42:42:18:177,18,0
chrVII	1083735	.	G	A	32.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=2;MQRankSum=0.971;QD=0.84;ReadPosRankSum=-3.199;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,16:38:62:62,0,88
chrVII	1083747	.	T	G	35.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=7.8883;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=2;MQRankSum=0.278;QD=1.03;ReadPosRankSum=-2.143;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:23,11:34:65:65,0,68
chrVII	1083749	.	T	C	33.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=7.8883;MLEAC=1;MLEAF=0.500;MQ=22.60;MQ0=2;MQRankSum=0.420;QD=1.00;ReadPosRankSum=2.942;SB=-6.521e-03	GT:AD:DP:GQ:PL	0/1:13,20:33:62:63,0,62
chrVII	1083754	.	C	A,T	90.01	SnpCluster;filter	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.980;DP=25;Dels=0.04;FS=0.000;HaplotypeScore=16.7978;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.78;MQ0=1;MQRankSum=0.226;QD=3.60;ReadPosRankSum=0.528;SB=-7.831e-03	GT:AD:DP:GQ:PL	1/2:1,7,16:24:65:150,74,65,76,0,67
chrVII	1083765	.	C	T	81.51	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=0;QD=3.54;SB=-5.215e-01	GT:AD:DP:GQ:PL	1/1:0,23:23:12:114,12,0
chrVII	1083769	.	A	G	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=22.45;MQ0=0;QD=1.26;SB=-1.757e+00	GT:AD:DP:GQ:PL	1/1:0,21:22:6:59,6,0
chrVII	1083781	.	G	A	213.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.087;DP=42;Dels=0.00;FS=10.107;HaplotypeScore=8.6839;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;MQRankSum=2.395;QD=5.07;ReadPosRankSum=2.614;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:4,37:42:27:246,27,0
chrVII	1083785	.	T	G	248.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.412;DP=51;Dels=0.00;FS=3.900;HaplotypeScore=2.7781;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=0;MQRankSum=2.189;QD=4.87;ReadPosRankSum=3.121;SB=-3.392e-01	GT:AD:DP:GQ:PL	1/1:8,43:51:14:281,14,0
chrVII	1083808	.	G	A,T	515.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.038;DP=64;Dels=0.00;FS=10.410;HaplotypeScore=3.8780;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.84;MQ0=0;MQRankSum=3.697;QD=8.05;ReadPosRankSum=-0.472;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/2:6,22,36:64:99:575,329,337,214,0,206
chrVII	1083841	.	A	G	931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.820;DP=140;Dels=0.00;FS=6.370;HaplotypeScore=7.5384;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;MQRankSum=3.467;QD=6.65;ReadPosRankSum=-1.612;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:5,134:140:80:964,80,0
chrVII	1083846	.	A	C	1073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.763;DP=143;Dels=0.00;FS=13.102;HaplotypeScore=10.0345;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=0;MQRankSum=1.490;QD=7.50;ReadPosRankSum=1.175;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:1,142:143:99:1106,123,0
chrVII	1083875	.	A	C	1308	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=26.04;MQ0=0;QD=9.15;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,143:143:99:1341,153,0
chrVII	1083888	.	C	T	983	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;QD=7.50;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,130:131:99:1016,117,0
chrVII	1083905	.	T	C	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DP=131;Dels=0.00;FS=49.743;HaplotypeScore=21.2870;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=0;MQRankSum=1.950;QD=0.24;ReadPosRankSum=-0.742;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:124,7:131:61:61,0,857
chrVII	1083914	.	C	T	89.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.003;DP=111;Dels=0.00;FS=86.460;HaplotypeScore=22.8630;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=0;MQRankSum=-0.234;QD=0.80;ReadPosRankSum=1.279;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:98,13:111:99:119,0,707
chrVII	1083925	.	T	A	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.512;DP=107;Dels=0.01;FS=27.263;HaplotypeScore=87.0802;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=0;MQRankSum=1.097;QD=0.35;ReadPosRankSum=1.604;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,36:106:67:67,0,819
chrVII	1083926	.	T	A	68.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;DP=109;Dels=0.01;FS=27.372;HaplotypeScore=89.0630;MLEAC=1;MLEAF=0.500;MQ=26.26;MQ0=0;MQRankSum=1.887;QD=0.62;ReadPosRankSum=1.691;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,36:108:98:98,0,843
chrVII	1083939	.	C	T	122.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;DP=124;Dels=0.00;FS=4.839;HaplotypeScore=102.4126;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=0;MQRankSum=2.533;QD=0.98;ReadPosRankSum=-4.445;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:99,23:124:99:152,0,1099
chrVII	1083947	.	T	C	11.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;DP=123;Dels=0.00;FS=47.192;HaplotypeScore=86.5096;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=0;MQRankSum=0.206;QD=0.09;ReadPosRankSum=3.204;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:103,14:123:41:41,0,1316
chrVII	1083951	.	G	A	84.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;DP=120;Dels=0.00;FS=67.798;HaplotypeScore=62.7393;MLEAC=1;MLEAF=0.500;MQ=27.15;MQ0=0;MQRankSum=0.432;QD=0.70;ReadPosRankSum=3.267;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:77,43:120:99:114,0,1291
chrVII	1083957	.	G	A	222.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.442;DP=117;Dels=0.00;FS=1.707;HaplotypeScore=89.5915;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=0;MQRankSum=0.414;QD=1.90;ReadPosRankSum=-3.825;SB=-2.590e+02	GT:AD:DP:GQ:PL	0/1:76,41:117:99:252,0,1271
chrVII	1084000	.	C	G	136.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;DP=115;Dels=0.01;FS=6.743;HaplotypeScore=40.4917;MLEAC=1;MLEAF=0.500;MQ=27.13;MQ0=2;MQRankSum=2.457;QD=1.18;ReadPosRankSum=-4.614;SB=-2.470e+02	GT:AD:DP:GQ:PL	0/1:81,33:114:99:166,0,1377
chrVII	1084008	.	G	A	829.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.160;DP=110;Dels=0.00;FS=43.204;HaplotypeScore=33.6610;MLEAC=1;MLEAF=0.500;MQ=27.21;MQ0=1;MQRankSum=0.981;QD=7.54;ReadPosRankSum=-1.122;SB=-7.001e+01	GT:AD:DP:GQ:PL	0/1:57,53:110:99:859,0,692
chrVII	1084026	.	G	T	365.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DP=99;Dels=0.00;FS=48.787;HaplotypeScore=9.2553;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=3;MQRankSum=1.744;QD=3.69;ReadPosRankSum=-3.840;SB=-2.401e+01	GT:AD:DP:GQ:PL	0/1:65,31:99:99:395,0,760
chrVII	1084034	.	G	A	70.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;DP=74;Dels=0.00;FS=45.065;HaplotypeScore=8.1898;MLEAC=1;MLEAF=0.500;MQ=25.08;MQ0=5;MQRankSum=0.082;QD=0.95;ReadPosRankSum=-2.842;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,19:74:99:100,0,580
chrVII	1084329	.	G	T	82.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.7203;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=0.817;QD=1.52;ReadPosRankSum=3.789;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,20:54:99:112,0,442
chrVII	1084330	.	A	G	78.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.5090;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=-0.208;QD=1.47;ReadPosRankSum=3.962;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,22:53:99:108,0,406
chrVII	1084334	.	A	G	174.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.5090;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=0.622;QD=3.41;ReadPosRankSum=4.641;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,21:51:99:204,0,369
chrVIII	355	.	T	C	80.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.657;DP=58;Dels=0.00;FS=66.611;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=15.69;MQ0=0;MQRankSum=3.380;QD=1.39;ReadPosRankSum=3.574;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:53,5:58:12:113,12,0
chrVIII	1495	.	G	A	380.07	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;DP=898;Dels=0.00;FS=299.291;HaplotypeScore=6.1367;MLEAC=1;MLEAF=0.500;MQ=7.01;MQ0=252;MQRankSum=7.637;QD=0.42;ReadPosRankSum=-7.524;SB=-4.508e+01	GT:AD:DP:GQ:PL	0/1:873,25:898:15:410,0,15
chrVIII	1508	.	A	T	486.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483;DP=939;Dels=0.00;FS=461.431;HaplotypeScore=43.8128;MLEAC=1;MLEAF=0.500;MQ=7.58;MQ0=268;MQRankSum=9.070;QD=0.52;ReadPosRankSum=-6.250;SB=-2.501e+00	GT:AD:DP:GQ:PL	0/1:903,36:939:99:516,0,164
chrVIII	1552	.	C	T	528.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.622;DP=626;Dels=0.00;FS=290.573;HaplotypeScore=102.3794;MLEAC=1;MLEAF=0.500;MQ=8.74;MQ0=294;MQRankSum=7.458;QD=0.84;ReadPosRankSum=7.862;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:570,33:626:99:558,0,291
chrVIII	1567	.	C	T	685.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.511;DP=428;Dels=0.00;FS=185.101;HaplotypeScore=59.2761;MLEAC=1;MLEAF=0.500;MQ=10.24;MQ0=268;MQRankSum=3.716;QD=1.60;ReadPosRankSum=3.323;SB=-5.833e-03	GT:AD:DP:GQ:PL	0/1:368,41:428:99:715,0,172
chrVIII	1569	.	G	A	50.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;DP=372;Dels=0.00;FS=18.788;HaplotypeScore=28.2439;MLEAC=1;MLEAF=0.500;MQ=10.95;MQ0=253;MQRankSum=5.275;QD=0.13;ReadPosRankSum=1.099;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:97,269:372:80:80,0,828
chrVIII	1576	.	G	A	625.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;DP=437;Dels=0.00;FS=239.595;HaplotypeScore=26.5377;MLEAC=1;MLEAF=0.500;MQ=10.26;MQ0=257;MQRankSum=5.403;QD=1.43;ReadPosRankSum=-0.505;SB=-6.302e-03	GT:AD:DP:GQ:PL	0/1:392,45:437:99:655,0,237
chrVIII	1585	.	G	A	264.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;DP=403;Dels=0.00;FS=150.345;HaplotypeScore=13.1440;MLEAC=1;MLEAF=0.500;MQ=9.81;MQ0=230;MQRankSum=4.134;QD=0.66;ReadPosRankSum=-2.671;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:381,21:403:99:294,0,294
chrVIII	1595	.	T	C	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700;DP=361;Dels=0.00;FS=62.205;HaplotypeScore=17.2191;MLEAC=1;MLEAF=0.500;MQ=9.65;MQ0=204;MQRankSum=2.624;QD=0.05;ReadPosRankSum=-3.797;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:351,7:361:48:48,0,347
chrVIII	1672	.	A	G	16.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;DP=50;Dels=0.00;FS=2.667;HaplotypeScore=13.6120;MLEAC=1;MLEAF=0.500;MQ=12.50;MQ0=33;MQRankSum=2.887;QD=0.32;ReadPosRankSum=1.529;SB=-1.140e-01	GT:AD:DP:GQ:PL	0/1:33,17:50:13:46,0,13
chrVIII	1686	.	A	C	39.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=20.4674;MLEAC=1;MLEAF=0.500;MQ=17.10;MQ0=12;MQRankSum=-0.702;QD=1.18;ReadPosRankSum=-0.702;SB=-4.301e+01	GT:AD:DP:GQ:PL	0/1:17,16:33:40:69,0,40
chrVIII	1693	.	G	A	36.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=8.1952;MLEAC=1;MLEAF=0.500;MQ=18.26;MQ0=9;MQRankSum=-2.074;QD=0.90;ReadPosRankSum=-1.098;SB=-4.301e+01	GT:AD:DP:GQ:PL	0/1:17,21:40:61:66,0,61
chrVIII	1717	.	G	A	73.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;DP=67;Dels=0.00;FS=22.989;HaplotypeScore=40.9594;MLEAC=1;MLEAF=0.500;MQ=15.53;MQ0=17;MQRankSum=1.661;QD=1.09;ReadPosRankSum=2.043;SB=-6.521e-03	GT:AD:DP:GQ:PL	0/1:39,11:67:60:103,0,60
chrVIII	1718	.	C	T	58.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;DP=67;Dels=0.00;FS=16.122;HaplotypeScore=40.9594;MLEAC=1;MLEAF=0.500;MQ=15.53;MQ0=17;MQRankSum=0.781;QD=0.87;ReadPosRankSum=1.981;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:51,16:67:88:88,0,154
chrVIII	1722	.	A	C	166.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;DP=72;Dels=0.00;FS=49.532;HaplotypeScore=41.0661;MLEAC=1;MLEAF=0.500;MQ=14.99;MQ0=21;MQRankSum=2.355;QD=2.31;ReadPosRankSum=3.251;SB=-6.563e-03	GT:AD:DP:GQ:PL	0/1:45,27:72:47:196,0,47
chrVIII	1732	.	T	A	166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DP=75;Dels=0.00;FS=46.522;HaplotypeScore=8.0652;MLEAC=1;MLEAF=0.500;MQ=14.40;MQ0=25;MQRankSum=2.340;QD=2.21;ReadPosRankSum=1.932;SB=-6.574e-03	GT:AD:DP:GQ:PL	0/1:49,26:75:46:196,0,46
chrVIII	1733	.	T	G	166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.952;DP=76;Dels=0.00;FS=46.522;HaplotypeScore=7.8805;MLEAC=1;MLEAF=0.500;MQ=14.30;MQ0=26;MQRankSum=2.495;QD=2.18;ReadPosRankSum=1.602;SB=-6.547e-03	GT:AD:DP:GQ:PL	0/1:50,26:76:49:196,0,49
chrVIII	1748	.	T	C	43.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;DP=85;Dels=0.00;FS=16.871;HaplotypeScore=23.7402;MLEAC=1;MLEAF=0.500;MQ=11.29;MQ0=37;MQRankSum=1.251;QD=0.51;ReadPosRankSum=-1.300;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,16:85:73:73,0,124
chrVIII	1753	.	G	A,C	101.91	SnpCluster;filter	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.337;DP=93;Dels=0.00;FS=15.836;HaplotypeScore=13.8947;MLEAC=1,1;MLEAF=0.500,0.500;MQ=10.20;MQ0=49;MQRankSum=4.041;QD=1.10;ReadPosRankSum=-2.749;SB=26.11	GT:AD:DP:GQ:PL	1/2:68,19,4:93:31:159,31,35,106,0,122
chrVIII	1758	.	A	C	157.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.250;DP=101;Dels=0.00;FS=52.587;HaplotypeScore=26.6901;MLEAC=2;MLEAF=1.00;MQ=9.18;MQ0=61;MQRankSum=3.846;QD=1.55;ReadPosRankSum=-2.058;SB=-8.028e-04	GT:AD:DP:GQ:PL	1/1:78,19:101:3:187,3,0
chrVIII	1760	.	T	G	45.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;DP=102;Dels=0.00;FS=18.014;HaplotypeScore=42.6727;MLEAC=1;MLEAF=0.500;MQ=9.14;MQ0=62;MQRankSum=2.656;QD=0.44;ReadPosRankSum=-2.235;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,10:102:75:75,0,105
chrVIII	1768	.	T	A	92.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.892;DP=109;Dels=0.00;FS=38.205;HaplotypeScore=14.4162;MLEAC=1;MLEAF=0.500;MQ=9.61;MQ0=66;MQRankSum=2.586;QD=0.84;ReadPosRankSum=-1.975;SB=-6.628e-03	GT:AD:DP:GQ:PL	0/1:94,15:109:43:122,0,43
chrVIII	1769	.	T	G	92.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;DP=111;Dels=0.00;FS=33.325;HaplotypeScore=10.5226;MLEAC=1;MLEAF=0.500;MQ=9.52;MQ0=68;MQRankSum=2.557;QD=0.83;ReadPosRankSum=-1.496;SB=-6.606e-03	GT:AD:DP:GQ:PL	0/1:98,13:111:44:122,0,44
chrVIII	1780	.	C	A	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DP=112;Dels=0.00;FS=15.546;HaplotypeScore=3.7089;MLEAC=1;MLEAF=0.500;MQ=8.76;MQ0=75;MQRankSum=1.803;QD=0.28;ReadPosRankSum=-1.260;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:104,8:112:61:61,0,199
chrVIII	1801	.	G	A	256	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=78;Dels=0.00;FS=26.881;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=9.10;MQ0=56;MQRankSum=3.022;QD=3.28;ReadPosRankSum=2.681;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:53,25:78:39:289,39,0
chrVIII	1804	.	G	T	191.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;DP=72;Dels=0.00;FS=11.809;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.59;MQ0=54;MQRankSum=2.100;QD=2.65;ReadPosRankSum=2.100;SB=-4.306e+01	GT:AD:DP:GQ:PL	1/1:56,12:72:29:224,29,0
chrVIII	1805	.	G	T	213	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.327;DP=69;Dels=0.00;FS=7.533;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.77;MQ0=52;MQRankSum=1.531;QD=3.09;ReadPosRankSum=1.531;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:53,16:69:33:246,33,0
chrVIII	1837	.	G	A	230	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=21;Dels=0.00;FS=6.690;HaplotypeScore=2.6779;MLEAC=2;MLEAF=1.00;MQ=15.51;MQ0=7;MQRankSum=-1.736;QD=10.95;ReadPosRankSum=1.488;SB=-4.600e+01	GT:AD:DP:GQ:PL	1/1:8,13:21:36:263,36,0
chrVIII	1846	.	A	G	234	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=21;Dels=0.00;FS=6.690;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=15.51;MQ0=7;MQRankSum=-1.488;QD=11.14;ReadPosRankSum=1.240;SB=-5.000e+01	GT:AD:DP:GQ:PL	1/1:1,20:21:36:267,36,0
chrVIII	5165	.	C	G	90.27	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;DP=11;Dels=0.00;FS=18.195;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=31.87;MQ0=0;MQRankSum=1.932;QD=8.21;ReadPosRankSum=1.749;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:6,5:11:9:120,0,9
chrVIII	5176	.	T	C	83.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=28;Dels=0.00;FS=24.823;HaplotypeScore=18.8016;MLEAC=1;MLEAF=0.500;MQ=30.46;MQ0=0;MQRankSum=2.812;QD=2.96;ReadPosRankSum=3.820;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,7:28:99:113,0,275
chrVIII	5199	.	A	G	41.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DP=53;Dels=0.00;FS=10.482;HaplotypeScore=2.6779;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=19;MQRankSum=0.222;QD=0.77;ReadPosRankSum=-2.082;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,24:53:71:71,0,504
chrVIII	5225	.	A	G	395.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;DP=81;Dels=0.00;FS=1.424;HaplotypeScore=14.2742;MLEAC=1;MLEAF=0.500;MQ=18.47;MQ0=36;MQRankSum=2.175;QD=4.88;ReadPosRankSum=3.924;SB=-9.497e+01	GT:AD:DP:GQ:PL	0/1:57,24:81:92:425,0,92
chrVIII	5232	.	C	T	576	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.563;DP=79;Dels=0.00;FS=7.270;HaplotypeScore=12.8660;MLEAC=2;MLEAF=1.00;MQ=17.40;MQ0=36;MQRankSum=0.311;QD=7.29;ReadPosRankSum=-0.738;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:33,45:79:63:609,63,0
chrVIII	5292	.	C	A	178.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;DP=90;Dels=0.00;FS=2.728;HaplotypeScore=28.7552;MLEAC=1;MLEAF=0.500;MQ=14.28;MQ0=31;MQRankSum=1.449;QD=1.98;ReadPosRankSum=-0.261;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:61,29:90:99:208,0,389
chrVIII	5293	.	G	T	283.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;DP=89;Dels=0.00;FS=7.214;HaplotypeScore=28.7552;MLEAC=1;MLEAF=0.500;MQ=14.36;MQ0=30;MQRankSum=-2.191;QD=3.18;ReadPosRankSum=1.504;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:41,47:89:99:313,0,287
chrVIII	5331	.	C	A	175.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=30.4727;MLEAC=1;MLEAF=0.500;MQ=15.41;MQ0=26;MQRankSum=2.096;QD=2.16;ReadPosRankSum=0.184;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,15:81:99:205,0,325
chrVIII	5379	.	T	A	173.03	filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=13.9684;MLEAC=2;MLEAF=1.00;MQ=15.64;MQ0=28;QD=2.47;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,65:70:24:206,24,0
chrVIII	5385	.	T	A	77.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=13.2444;MLEAC=1;MLEAF=0.500;MQ=15.57;MQ0=30;MQRankSum=1.737;QD=1.13;ReadPosRankSum=0.090;SB=0.962	GT:AD:DP:GQ:PL	0/1:30,35:68:29:107,0,29
chrVIII	5390	.	G	A	57.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=12.2866;MLEAC=1;MLEAF=0.500;MQ=14.85;MQ0=34;MQRankSum=-1.318;QD=0.79;ReadPosRankSum=-0.075;SB=-6.528e-03	GT:AD:DP:GQ:PL	0/1:9,63:72:54:87,0,54
chrVIII	5477	.	C	A	206.04	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.8429;MLEAC=1;MLEAF=0.500;MQ=20.05;MQ0=9;MQRankSum=2.548;QD=6.44;ReadPosRankSum=1.981;SB=0.224	GT:AD:DP:GQ:PL	0/1:12,14:32:18:236,0,18
chrVIII	5478	.	C	T	282	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=32;Dels=0.00;FS=24.823;HaplotypeScore=3.8429;MLEAC=2;MLEAF=1.00;MQ=20.69;MQ0=8;MQRankSum=2.286;QD=8.81;ReadPosRankSum=1.270;SB=0.125	GT:AD:DP:GQ:PL	1/1:8,23:32:33:315,33,0
chrVIII	5485	.	C	A	279	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.927;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=6.6547;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=1;MQRankSum=2.237;QD=11.63;ReadPosRankSum=1.800;SB=-1.060e-02	GT:AD:DP:GQ:PL	1/1:2,22:24:33:312,33,0
chrVIII	5489	.	G	A	243	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=1;QD=10.13;SB=-1.060e-02	GT:AD:DP:GQ:PL	1/1:0,24:24:33:276,33,0
chrVIII	5490	.	T	G	162.06	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.938;DP=24;Dels=0.00;FS=3.617;HaplotypeScore=3.7016;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=1;MQRankSum=2.884;QD=6.75;ReadPosRankSum=1.271;SB=-5.986e-02	GT:AD:DP:GQ:PL	0/1:11,13:24:16:192,0,16
chrVIII	5492	.	C	A	188.04	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.442;DP=24;Dels=0.00;FS=3.617;HaplotypeScore=6.5648;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=1;MQRankSum=3.318;QD=7.84;ReadPosRankSum=1.271;SB=-3.943e-02	GT:AD:DP:GQ:PL	0/1:11,13:24:18:218,0,18
chrVIII	5502	.	C	T	115.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=9.4332;MLEAC=1;MLEAF=0.500;MQ=21.96;MQ0=1;MQRankSum=3.318;QD=4.26;ReadPosRankSum=1.774;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:13,14:27:99:145,0,100
chrVIII	5504	.	C	G	109.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=6.5700;MLEAC=1;MLEAF=0.500;MQ=21.19;MQ0=1;MQRankSum=3.561;QD=3.76;ReadPosRankSum=1.861;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:15,14:29:99:139,0,101
chrVIII	5506	.	A	C	115.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=8.6083;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=1;MQRankSum=3.513;QD=3.59;ReadPosRankSum=2.163;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,14:32:99:145,0,101
chrVIII	5539	.	T	G	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.077;DP=51;Dels=0.00;FS=2.385;HaplotypeScore=8.5821;MLEAC=1;MLEAF=0.500;MQ=18.56;MQ0=1;MQRankSum=3.242;QD=0.43;ReadPosRankSum=-2.712;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:42,9:51:52:52,0,271
chrVIII	5556	.	C	T	297	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=0;QD=7.24;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:36:330,36,0
chrVIII	5600	.	T	C	334.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.301;DP=70;Dels=0.00;FS=8.345;HaplotypeScore=32.5355;MLEAC=1;MLEAF=0.500;MQ=16.72;MQ0=8;MQRankSum=0.164;QD=4.77;ReadPosRankSum=1.776;SB=-1.350e+02	GT:AD:DP:GQ:PL	0/1:33,37:70:60:364,0,60
chrVIII	5610	.	T	C	459.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;DP=77;Dels=0.00;FS=1.012;HaplotypeScore=26.2015;MLEAC=1;MLEAF=0.500;MQ=18.81;MQ0=10;MQRankSum=4.160;QD=5.96;ReadPosRankSum=0.870;SB=-1.980e+02	GT:AD:DP:GQ:PL	0/1:47,27:77:99:489,0,105
chrVIII	5642	.	T	C	570	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.042;DP=76;Dels=0.00;FS=4.087;HaplotypeScore=11.3387;MLEAC=2;MLEAF=1.00;MQ=17.75;MQ0=19;MQRankSum=-0.380;QD=7.50;ReadPosRankSum=1.648;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:11,40:76:49:603,49,0
chrVIII	5645	.	T	C	456.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;DP=80;Dels=0.00;FS=0.985;HaplotypeScore=17.2956;MLEAC=1;MLEAF=0.500;MQ=18.27;MQ0=19;MQRankSum=3.828;QD=5.70;ReadPosRankSum=0.977;SB=-2.020e+02	GT:AD:DP:GQ:PL	0/1:52,28:80:52:486,0,52
chrVIII	5686	.	G	A	407.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;DP=74;Dels=0.00;FS=3.896;HaplotypeScore=5.5488;MLEAC=1;MLEAF=0.500;MQ=22.31;MQ0=11;MQRankSum=-1.152;QD=5.50;ReadPosRankSum=6.150;SB=-1.630e+02	GT:AD:DP:GQ:PL	0/1:29,45:74:99:437,0,196
chrVIII	5689	.	T	C	136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.785;DP=68;Dels=0.00;FS=2.670;HaplotypeScore=5.5488;MLEAC=1;MLEAF=0.500;MQ=21.78;MQ0=11;MQRankSum=1.363;QD=2.00;ReadPosRankSum=-5.409;SB=-1.020e+02	GT:AD:DP:GQ:PL	0/1:49,19:68:99:166,0,512
chrVIII	5724	.	C	T	578	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=8;QD=12.84;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:63:611,63,0
chrVIII	5747	.	C	T	15.14	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=19.45;MQ0=0;MQRankSum=1.231;QD=0.89;ReadPosRankSum=-1.231;SB=-6.587e-03	GT:AD:DP:GQ:PL	0/1:3,12:17:45:45,0,45
chrVIII	5759	.	G	A	30.77	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=1;QD=7.69;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:1,3:4:6:62,6,0
chrVIII	5905	.	C	A	13.23	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=3.4424;MLEAC=1;MLEAF=0.500;MQ=20.01;MQ0=0;MQRankSum=1.557;QD=0.95;ReadPosRankSum=0.156;SB=-2.373e-02	GT:AD:DP:GQ:PL	0/1:11,3:14:21:43,0,21
chrVIII	5920	.	C	A	43.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;DP=23;Dels=0.00;FS=5.656;HaplotypeScore=5.1088;MLEAC=1;MLEAF=0.500;MQ=19.05;MQ0=0;MQRankSum=1.901;QD=1.87;ReadPosRankSum=-0.186;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,5:23:73:73,0,89
chrVIII	5926	.	G	C	30.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;DP=26;Dels=0.00;FS=16.443;HaplotypeScore=8.6011;MLEAC=1;MLEAF=0.500;MQ=19.38;MQ0=0;MQRankSum=0.659;QD=1.15;ReadPosRankSum=0.975;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:16,10:26:60:60,0,162
chrVIII	5930	.	G	T	31.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;DP=28;Dels=0.00;FS=8.501;HaplotypeScore=7.8111;MLEAC=1;MLEAF=0.500;MQ=19.22;MQ0=0;MQRankSum=2.659;QD=1.11;ReadPosRankSum=0.084;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,6:28:61:61,0,165
chrVIII	5941	.	C	T	22.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;DP=39;Dels=0.00;FS=10.646;HaplotypeScore=12.0161;MLEAC=1;MLEAF=0.500;MQ=18.28;MQ0=0;MQRankSum=1.861;QD=0.56;ReadPosRankSum=0.539;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,8:39:52:52,0,217
chrVIII	5942	.	G	A	25.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.229;DP=39;Dels=0.00;FS=22.166;HaplotypeScore=12.0161;MLEAC=1;MLEAF=0.500;MQ=18.28;MQ0=0;MQRankSum=-0.447;QD=0.64;ReadPosRankSum=0.678;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,15:39:55:55,0,218
chrVIII	5948	.	T	A	19.06	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DP=38;Dels=0.00;FS=8.059;HaplotypeScore=14.7683;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=0;MQRankSum=1.958;QD=0.50;ReadPosRankSum=1.356;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,7:38:49:49,0,258
chrVIII	5953	.	T	C	61.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;DP=41;Dels=0.00;FS=26.407;HaplotypeScore=8.0661;MLEAC=1;MLEAF=0.500;MQ=18.95;MQ0=0;MQRankSum=0.622;QD=1.49;ReadPosRankSum=-0.357;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,17:41:91:91,0,252
chrVIII	5962	.	A	G	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;DP=39;Dels=0.00;FS=11.004;HaplotypeScore=8.7479;MLEAC=1;MLEAF=0.500;MQ=19.04;MQ0=0;MQRankSum=2.417;QD=0.95;ReadPosRankSum=-0.083;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,9:39:67:67,0,282
chrVIII	5992	.	G	T	17.09	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;DP=32;Dels=0.00;FS=14.526;HaplotypeScore=11.6820;MLEAC=1;MLEAF=0.500;MQ=19.09;MQ0=0;MQRankSum=1.972;QD=0.53;ReadPosRankSum=-0.833;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,10:32:47:47,0,256
chrVIII	5998	.	T	G	185.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;DP=30;Dels=0.00;FS=16.332;HaplotypeScore=15.2565;MLEAC=1;MLEAF=0.500;MQ=19.40;MQ0=0;MQRankSum=-2.641;QD=6.17;ReadPosRankSum=0.323;SB=-1.279e+02	GT:AD:DP:GQ:PL	0/1:9,17:30:35:215,0,35
chrVIII	6036	.	G	A	12.99	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9916;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=1;MQRankSum=0.727;QD=2.60;ReadPosRankSum=-0.727;SB=1.30	GT:AD:DP:GQ:PL	1/1:2,3:5:6:44,6,0
chrVIII	6037	.	T	C	12.99	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=1;MQRankSum=0.727;QD=2.60;ReadPosRankSum=-0.727;SB=1.29	GT:AD:DP:GQ:PL	1/1:2,3:5:6:44,6,0
chrVIII	6038	.	A	G	12.99	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=1;QD=2.60;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:1,4:5:6:44,6,0
chrVIII	6053	.	T	C	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=3.14;SB=-1.508e+00	GT:AD:DP:GQ:PL	1/1:1,5:6:6:50,6,0
chrVIII	6497	.	C	A	30.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=0;MQRankSum=0.427;QD=0.91;ReadPosRankSum=1.582;SB=0.128	GT:AD:DP:GQ:PL	0/1:5,28:33:60:60,0,87
chrVIII	6504	.	A	G	22.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=0;MQRankSum=0.625;QD=0.71;ReadPosRankSum=2.575;SB=-2.189e-03	GT:AD:DP:GQ:PL	0/1:6,25:31:52:52,0,92
chrVIII	6505	.	A	C	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.7044;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=0;MQRankSum=1.525;QD=0.65;ReadPosRankSum=2.375;SB=2.117e-03	GT:AD:DP:GQ:PL	0/1:6,25:31:50:50,0,90
chrVIII	6506	.	T	A	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.6200;MLEAC=1;MLEAF=0.500;MQ=24.24;MQ0=0;MQRankSum=0.875;QD=0.65;ReadPosRankSum=2.375;SB=2.117e-03	GT:AD:DP:GQ:PL	0/1:6,25:31:50:50,0,90
chrVIII	6515	.	T	G	158.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.3254;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;MQRankSum=2.301;QD=4.79;ReadPosRankSum=1.471;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:2,31:33:21:191,21,0
chrVIII	6516	.	T	A	161.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.3254;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;MQRankSum=2.301;QD=4.88;ReadPosRankSum=1.547;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:2,31:33:21:194,21,0
chrVIII	6517	.	T	G	157.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.789;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=0;MQRankSum=1.032;QD=4.62;ReadPosRankSum=2.064;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:3,31:34:21:190,21,0
chrVIII	6529	.	T	G	186.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.278;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=0;MQRankSum=2.314;QD=5.17;ReadPosRankSum=-0.725;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:2,34:36:24:219,24,0
chrVIII	6531	.	A	C	190.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.070;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.4087;MLEAC=2;MLEAF=1.00;MQ=24.57;MQ0=0;MQRankSum=2.314;QD=5.00;ReadPosRankSum=-1.001;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:2,34:38:24:223,24,0
chrVIII	6538	.	T	C	51.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.3665;MLEAC=1;MLEAF=0.500;MQ=24.23;MQ0=0;MQRankSum=2.094;QD=1.34;ReadPosRankSum=-1.167;SB=3.421e-04	GT:AD:DP:GQ:PL	0/1:9,29:38:81:81,0,100
chrVIII	6592	.	A	G	94.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=1;QD=6.73;SB=-2.718e-01	GT:AD:DP:GQ:PL	1/1:0,14:14:15:127,15,0
chrVIII	6594	.	T	C	60.42	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=1;MQRankSum=1.203;QD=4.32;ReadPosRankSum=-0.668;SB=-3.260e+00	GT:AD:DP:GQ:PL	0/1:2,12:14:7:90,0,7
chrVIII	6599	.	A	G	58.42	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=1;MQRankSum=1.107;QD=4.87;ReadPosRankSum=0.158;SB=-2.789e+00	GT:AD:DP:GQ:PL	0/1:2,10:12:7:88,0,7
chrVIII	6600	.	G	A	42.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=1;QD=3.58;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:1,11:12:9:75,9,0
chrVIII	6602	.	A	G	57.42	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.8670;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=1;MQRankSum=1.423;QD=4.78;ReadPosRankSum=0.474;SB=-2.234e+00	GT:AD:DP:GQ:PL	0/1:2,10:12:7:87,0,7
chrVIII	6619	.	T	C	17.20	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=7.6025;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=1;MQRankSum=0.747;QD=1.91;ReadPosRankSum=0.747;SB=0.420	GT:AD:DP:GQ:PL	0/1:2,7:9:13:47,0,13
chrVIII	6624	.	T	C	15.25	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=5.6557;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=1;MQRankSum=0.747;QD=1.69;ReadPosRankSum=0.747;SB=0.420	GT:AD:DP:GQ:PL	0/1:2,7:9:13:45,0,13
chrVIII	6629	.	C	A	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.13;MQ0=1;QD=3.10;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:1,7:8:6:56,6,0
chrVIII	6772	.	C	T	161.06	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=0;QD=9.47;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:21:194,21,0
chrVIII	6773	.	G	A	165.06	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.56;MQ0=0;QD=9.71;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:21:198,21,0
chrVIII	6850	.	C	A	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=64;Dels=0.00;FS=3.748;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=26.00;MQ0=0;MQRankSum=-0.974;QD=19.92;ReadPosRankSum=1.083;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1308,138,0
chrVIII	6857	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=0;QD=19.35;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1194,135,0
chrVIII	6865	.	T	C	1098	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=0.491;QD=16.15;ReadPosRankSum=1.681;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1131,135,0
chrVIII	6913	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=17.3829;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;QD=14.07;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:72:99:1046,117,0
chrVIII	7057	.	A	G	187.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.40;MQ0=0;QD=10.39;SB=-5.504e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:24:220,24,0
chrVIII	7061	.	G	A	167.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=0.919;QD=9.83;ReadPosRankSum=1.327;SB=-6.007e+01	GT:AD:DP:GQ:PL	1/1:1,16:17:21:200,21,0
chrVIII	7062	.	C	T	167.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=0.919;QD=9.83;ReadPosRankSum=1.327;SB=-5.607e+01	GT:AD:DP:GQ:PL	1/1:1,16:17:21:200,21,0
chrVIII	7085	.	A	G	137.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=0;MQRankSum=1.041;QD=6.86;ReadPosRankSum=-0.347;SB=-1.671e+02	GT:AD:DP:GQ:PL	1/1:1,19:20:18:170,18,0
chrVIII	7087	.	T	C	139.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.520;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.8735;MLEAC=2;MLEAF=1.00;MQ=25.19;MQ0=0;MQRankSum=0.867;QD=6.96;ReadPosRankSum=-0.347;SB=-1.491e+02	GT:AD:DP:GQ:PL	1/1:1,19:20:18:172,18,0
chrVIII	7090	.	T	C	135.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=22;Dels=0.00;FS=2.817;HaplotypeScore=5.4087;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=0;MQRankSum=-0.861;QD=6.14;ReadPosRankSum=1.531;SB=-1.421e+02	GT:AD:DP:GQ:PL	1/1:3,19:22:18:168,18,0
chrVIII	7099	.	T	C	40.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DP=24;Dels=0.00;FS=2.706;HaplotypeScore=11.2912;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=0;MQRankSum=1.097;QD=1.71;ReadPosRankSum=-0.992;SB=-1.646e+02	GT:AD:DP:GQ:PL	1/1:2,22:24:9:73,9,0
chrVIII	7102	.	C	T	41.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.419;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=4.6487;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=1.261;QD=1.82;ReadPosRankSum=-1.734;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:1,21:23:9:74,9,0
chrVIII	7103	.	A	T	43.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=23;Dels=0.00;FS=2.793;HaplotypeScore=5.5441;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=0.709;QD=1.91;ReadPosRankSum=-1.364;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/1:2,21:23:9:76,9,0
chrVIII	7104	.	A	G	143.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.473;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=13.0063;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=1.103;QD=6.22;ReadPosRankSum=-1.734;SB=-1.951e+02	GT:AD:DP:GQ:PL	1/1:1,21:22:21:176,21,0
chrVIII	7107	.	T	G	166.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.5441;MLEAC=2;MLEAF=1.00;MQ=26.65;MQ0=0;MQRankSum=1.386;QD=5.54;ReadPosRankSum=-1.502;SB=-2.861e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:21:199,21,0
chrVIII	7113	.	G	T	290	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;MQRankSum=1.348;QD=8.06;ReadPosRankSum=-1.348;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:36:323,36,0
chrVIII	7118	.	C	G	324	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;MQRankSum=1.251;QD=9.00;ReadPosRankSum=-1.059;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:39:357,39,0
chrVIII	7119	.	C	G	304	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.770;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;MQRankSum=1.251;QD=8.44;ReadPosRankSum=-1.059;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:36:337,36,0
chrVIII	7128	.	T	C	359	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.473;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.35;MQ0=0;MQRankSum=1.559;QD=8.97;ReadPosRankSum=0.000;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:42:392,42,0
chrVIII	7131	.	A	G	398	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=9.71;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:48:431,48,0
chrVIII	7140	.	T	A	302	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.541;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;MQRankSum=-0.379;QD=7.95;ReadPosRankSum=2.761;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:3,35:38:42:335,42,0
chrVIII	7141	.	A	T	314	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=27.26;MQ0=0;MQRankSum=0.487;QD=8.26;ReadPosRankSum=2.761;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:3,35:38:42:347,42,0
chrVIII	7152	.	C	T	588	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.60;MQ0=0;QD=12.78;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:66:621,66,0
chrVIII	7155	.	C	T	493	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=12.02;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:60:526,60,0
chrVIII	7156	.	T	A	540	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=13.17;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:63:573,63,0
chrVIII	7157	.	G	C	540	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=0;QD=13.17;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:63:573,63,0
chrVIII	7164	.	C	A	671	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=13.16;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:72:704,72,0
chrVIII	7168	.	C	A	657	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=12.63;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:72:690,72,0
chrVIII	7176	.	C	T	635	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=10.95;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:75:668,75,0
chrVIII	7191	.	C	T	790	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=12.74;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:87:823,87,0
chrVIII	7205	.	T	C	494	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=11.23;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:527,57,0
chrVIII	7207	.	T	C	487	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=11.07;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:520,57,0
chrVIII	7208	.	A	G	471	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=10.70;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:504,57,0
chrVIII	7209	.	T	C	487	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=11.07;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:520,57,0
chrVIII	7214	.	A	G	489	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=11.11;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:522,57,0
chrVIII	7215	.	C	T	491	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=11.16;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:524,57,0
chrVIII	7217	.	A	G	467	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=10.61;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:500,57,0
chrVIII	7219	.	A	G	475	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=1;QD=10.80;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:57:508,57,0
chrVIII	7220	.	G	T	440	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=45;Dels=0.00;FS=3.212;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=1;MQRankSum=-1.575;QD=9.78;ReadPosRankSum=1.654;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:54:473,54,0
chrVIII	7227	.	A	G	477	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=7.95;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:57:510,57,0
chrVIII	7228	.	A	G	478	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.93;MQ0=1;QD=7.97;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:54:511,54,0
chrVIII	7237	.	G	A	490	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=1;QD=8.17;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:54:523,54,0
chrVIII	7255	.	G	T	516	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.56;MQ0=3;QD=7.70;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:60:549,60,0
chrVIII	7262	.	G	A	624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=76;Dels=0.00;FS=2.090;HaplotypeScore=7.6491;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=3;MQRankSum=2.121;QD=8.21;ReadPosRankSum=2.969;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:6,70:76:69:657,69,0
chrVIII	7354	.	T	C	953	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;DP=69;Dels=0.00;FS=6.179;HaplotypeScore=8.3943;MLEAC=2;MLEAF=1.00;MQ=40.82;MQ0=3;MQRankSum=1.715;QD=13.81;ReadPosRankSum=1.366;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:3,64:69:99:986,105,0
chrVIII	7411	.	C	T	776	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=1;QD=19.40;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:809,84,0
chrVIII	7426	.	G	C	765	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=1;QD=20.13;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:798,84,0
chrVIII	7504	.	T	A	1986	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=22.57;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2019,231,0
chrVIII	7576	.	A	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=37.14;MQ0=0;QD=18.60;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1391,144,0
chrVIII	7596	.	C	G	1456	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=18.67;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1489,156,0
chrVIII	7641	.	C	T	1752	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=0;QD=19.04;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1785,192,0
chrVIII	7656	.	T	A	1814	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=0;QD=20.38;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1847,201,0
chrVIII	7694	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;QD=18.13;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1592,174,0
chrVIII	7696	.	C	T	1441	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=18.01;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1474,165,0
chrVIII	7714	.	G	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=19.40;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1430,156,0
chrVIII	7727	.	A	C	1066	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=18.07;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1099,123,0
chrVIII	7742	.	C	A	1005	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=17.63;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1038,108,0
chrVIII	7747	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=8.625;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.16;MQ0=0;MQRankSum=-0.985;QD=19.47;ReadPosRankSum=1.664;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1026,108,0
chrVIII	7767	.	T	C	995	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.42;MQ0=0;QD=17.77;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1028,117,0
chrVIII	7823	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=20.43;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1361,153,0
chrVIII	7825	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=20.10;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1299,150,0
chrVIII	7835	.	A	C	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;MQRankSum=-0.096;QD=18.64;ReadPosRankSum=0.337;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1394,156,0
chrVIII	7900	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=22.05;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1334,144,0
chrVIII	7930	.	G	T	1029	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=0;QD=16.87;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1062,117,0
chrVIII	7938	.	A	C	821	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=34.3677;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=15.20;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:854,99,0
chrVIII	7939	.	G	A	860	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=34.3677;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=15.93;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:893,102,0
chrVIII	7959	.	A	G	521	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=26.22;MQ0=0;QD=9.65;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:69:554,69,0
chrVIII	7965	.	G	C	562	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;QD=9.69;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:72:595,72,0
chrVIII	7987	.	G	A	476	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=8.65;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:63:509,63,0
chrVIII	8016	.	T	G	480	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=10.43;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:63:513,63,0
chrVIII	8034	.	T	C	476	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=11.07;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:63:509,63,0
chrVIII	8042	.	G	A	489	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=0;QD=11.64;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:60:522,60,0
chrVIII	8066	.	A	T	627	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=13.63;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:75:660,75,0
chrVIII	8067	.	G	A	588	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=12.78;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:72:621,72,0
chrVIII	8084	.	T	C	646	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=12.19;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:81:679,81,0
chrVIII	8096	.	G	A	783	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=13.98;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:93:816,93,0
chrVIII	8105	.	A	G	806	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=0;QD=11.68;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:96:839,96,0
chrVIII	8144	.	C	T	1113	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;QD=11.24;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1146,126,0
chrVIII	8151	.	C	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.05;MQ0=0;QD=10.08;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1071,123,0
chrVIII	8165	.	T	C	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=140;Dels=0.00;FS=2.583;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;MQRankSum=-2.115;QD=11.29;ReadPosRankSum=2.950;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:3,137:140:99:1614,180,0
chrVIII	8183	.	G	T	1758	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=12.21;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:1791,195,0
chrVIII	8221	.	A	G	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=5.520;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;MQRankSum=-1.134;QD=12.24;ReadPosRankSum=1.707;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:1,138:139:99:1734,192,0
chrVIII	8233	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=12.06;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:1529,174,0
chrVIII	8258	.	C	T	638	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=7.97;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:78:671,78,0
chrVIII	8261	.	G	C	741	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=9.26;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:87:774,87,0
chrVIII	8267	.	T	C	765	SnpCluster	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;QD=10.07;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:90:798,90,0
chrVIII	8316	.	G	T	1067	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=13.17;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1100,117,0
chrVIII	8321	.	C	T	1145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=93;Dels=0.00;FS=3.664;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;MQRankSum=-0.726;QD=12.31;ReadPosRankSum=-0.279;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1178,126,0
chrVIII	8399	.	G	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=17.63;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1285,141,0
chrVIII	8417	.	G	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;QD=15.49;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1133,129,0
chrVIII	8434	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=14.52;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1340,150,0
chrVIII	8441	.	T	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=40.41;MQ0=0;QD=14.42;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1360,153,0
chrVIII	8480	.	T	A	2328	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=41.98;MQ0=0;QD=17.91;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2361,258,0
chrVIII	9010	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=18.69;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1435,150,0
chrVIII	9047	.	G	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.48;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1446,147,0
chrVIII	9077	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.84;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1121,114,0
chrVIII	9080	.	G	A	1096	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.68;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1129,120,0
chrVIII	9169	.	G	A	1248	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.69;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1281,132,0
chrVIII	9385	.	G	A	1957	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.30;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1990,204,0
chrVIII	9426	.	T	A	1916	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.9057;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.247;QD=22.54;ReadPosRankSum=1.691;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1949,201,0
chrVIII	9634	.	A	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.72;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1856,192,0
chrVIII	9704	.	C	T	2361	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4610;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.35;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2394,252,0
chrVIII	9770	.	A	C	1946	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.87;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1979,201,0
chrVIII	10013	.	T	C	2402	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.02;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2435,258,0
chrVIII	10046	.	A	T	1983	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.03;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2016,210,0
chrVIII	10217	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=59;Dels=0.00;FS=3.729;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=1.321;QD=21.61;ReadPosRankSum=0.558;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1308,135,0
chrVIII	10242	.	G	T	1619	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.81;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1652,171,0
chrVIII	10615	.	T	C	1350	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=11.1333;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=19.85;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1383,147,0
chrVIII	10670	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.11;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1466,156,0
chrVIII	10789	.	T	C	963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=9.208;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.267;QD=18.88;ReadPosRankSum=2.354;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:996,105,0
chrVIII	10795	.	C	T	1087	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.74;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1120,114,0
chrVIII	11276	.	T	A	2000	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.73;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2033,216,0
chrVIII	11308	.	G	A	2315	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.15;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2348,246,0
chrVIII	11520	.	T	A	3419.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=157;Dels=0.00;FS=5.231;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=1.961;QD=21.78;ReadPosRankSum=2.878;SB=-1.584e+03	GT:AD:DP:GQ:PL	1/1:3,154:157:99:3419,352,0
chrVIII	11599	.	A	G	3198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=128;Dels=0.00;FS=4.737;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;MQRankSum=-0.271;QD=24.98;ReadPosRankSum=1.651;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:1,127:128:99:3231,345,0
chrVIII	11625	.	C	G	2176	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=23.40;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2209,237,0
chrVIII	11689	.	G	A	1031	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.75;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1064,108,0
chrVIII	11812	.	T	C	3710.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.839;DP=199;Dels=0.02;FS=9.693;HaplotypeScore=24.3902;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.815;QD=18.64;ReadPosRankSum=3.398;SB=-1.559e+03	GT:AD:DP:GQ:PL	1/1:4,192:196:99:3710,393,0
chrVIII	11877	.	T	C	176.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;DP=133;Dels=0.00;FS=25.950;HaplotypeScore=117.2049;MLEAC=1;MLEAF=0.500;MQ=41.41;MQ0=0;MQRankSum=0.034;QD=1.32;ReadPosRankSum=3.491;SB=-1.138e+03	GT:AD:DP:GQ:PL	0/1:9,121:133:36:206,0,36
chrVIII	11931	.	T	C	740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=46;Dels=0.00;FS=14.333;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=3;MQRankSum=2.837;QD=16.09;ReadPosRankSum=2.694;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:3,43:46:84:773,84,0
chrVIII	12043	.	A	G	610.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;DP=62;Dels=0.00;FS=45.296;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=39.41;MQ0=1;MQRankSum=1.968;QD=9.84;ReadPosRankSum=0.576;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:9,52:62:78:640,0,78
chrVIII	12073	.	G	A	690.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.648;DP=82;Dels=0.00;FS=37.433;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=1;MQRankSum=1.744;QD=8.43;ReadPosRankSum=0.813;SB=-1.982e+00	GT:AD:DP:GQ:PL	1/1:7,75:82:9:723,9,0
chrVIII	12229	.	G	A	519.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.738;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.6744;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=7;MQRankSum=0.029;QD=13.67;ReadPosRankSum=-0.678;SB=-1.946e+01	GT:AD:DP:GQ:PL	1/1:9,29:38:12:552,12,0
chrVIII	12262	.	G	A	455	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=19.78;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:51:488,51,0
chrVIII	12276	.	G	A	264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.15;MQ0=0;MQRankSum=0.578;QD=14.67;ReadPosRankSum=1.542;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:1,17:18:30:297,30,0
chrVIII	12321	.	A	G	49.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.666;DP=9;Dels=0.00;FS=3.010;HaplotypeScore=3.7317;MLEAC=2;MLEAF=1.00;MQ=18.46;MQ0=0;MQRankSum=1.666;QD=5.55;ReadPosRankSum=-1.179;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,7:9:9:82,9,0
chrVIII	12341	.	G	A	56.97	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.92;MQ0=0;QD=4.38;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:89,9,0
chrVIII	12345	.	G	A	56.97	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.02;MQ0=0;QD=3.35;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,15:17:9:89,9,0
chrVIII	12397	.	C	T	148.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.076;DP=28;Dels=0.00;FS=64.925;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=0;MQRankSum=3.128;QD=5.29;ReadPosRankSum=3.026;SB=-4.053e-02	GT:AD:DP:GQ:PL	1/1:20,8:28:21:181,21,0
chrVIII	12400	.	G	T	158.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.92;MQ0=0;QD=5.65;SB=-1.000e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:21:191,21,0
chrVIII	12408	.	C	T	158.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.012;DP=40;Dels=0.00;FS=35.002;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.63;MQ0=0;MQRankSum=3.702;QD=3.95;ReadPosRankSum=4.176;SB=-4.053e-02	GT:AD:DP:GQ:PL	1/1:32,8:40:21:191,21,0
chrVIII	12409	.	A	G	151.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.234;DP=41;Dels=0.00;FS=35.002;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.44;MQ0=0;MQRankSum=3.702;QD=3.68;ReadPosRankSum=4.108;SB=-4.053e-02	GT:AD:DP:GQ:PL	1/1:33,8:41:21:184,21,0
chrVIII	12452	.	T	C	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=0;QD=0.43;SB=-7.877e+01	GT:AD:DP:GQ:PL	1/1:0,41:44:6:50,6,0
chrVIII	12458	.	G	A	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.93;MQ0=0;QD=0.47;SB=-8.477e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:6:51,6,0
chrVIII	12464	.	T	C	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.01;MQ0=0;QD=0.45;SB=-8.277e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:6:52,6,0
chrVIII	12505	.	A	G	193.03	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.888;DP=47;Dels=0.00;FS=7.649;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=3;MQRankSum=2.419;QD=4.11;ReadPosRankSum=3.293;SB=-2.204e+01	GT:AD:DP:GQ:PL	1/1:12,35:47:24:226,24,0
chrVIII	12511	.	T	A	133.42	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.324;DP=42;Dels=0.00;FS=5.099;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=3;MQRankSum=3.761;QD=3.18;ReadPosRankSum=3.886;SB=-3.430e+00	GT:AD:DP:GQ:PL	0/1:14,28:42:7:163,0,7
chrVIII	12512	.	T	C	112.42	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;DP=44;Dels=0.00;FS=5.401;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=23.54;MQ0=3;MQRankSum=3.880;QD=2.55;ReadPosRankSum=4.048;SB=-3.430e+00	GT:AD:DP:GQ:PL	0/1:16,28:44:7:142,0,7
chrVIII	12513	.	A	C	167.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=23.54;MQ0=3;QD=3.80;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:0,44:44:21:200,21,0
chrVIII	12520	.	T	C	128.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;DP=46;Dels=0.00;FS=5.525;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=3;MQRankSum=4.013;QD=2.78;ReadPosRankSum=2.535;SB=-2.938e+00	GT:AD:DP:GQ:PL	0/1:18,28:46:25:158,0,25
chrVIII	12522	.	A	G	127.42	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.22;MQ0=3;MQRankSum=4.585;QD=2.77;ReadPosRankSum=2.776;SB=-3.430e+00	GT:AD:DP:GQ:PL	0/1:19,27:46:7:157,0,7
chrVIII	12528	.	G	A	113.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;DP=41;Dels=0.00;FS=2.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=3;MQRankSum=4.629;QD=2.76;ReadPosRankSum=1.762;SB=0.528	GT:AD:DP:GQ:PL	0/1:18,23:41:43:143,0,43
chrVIII	12529	.	G	T	121.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DP=41;Dels=0.00;FS=2.931;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=3;MQRankSum=4.480;QD=2.95;ReadPosRankSum=1.523;SB=1.75	GT:AD:DP:GQ:PL	0/1:18,23:41:45:151,0,45
chrVIII	12533	.	G	A	117.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DP=47;Dels=0.00;FS=2.675;HaplotypeScore=26.6128;MLEAC=1;MLEAF=0.500;MQ=23.67;MQ0=3;MQRankSum=4.902;QD=2.49;ReadPosRankSum=-1.684;SB=-2.042e+00	GT:AD:DP:GQ:PL	0/1:18,29:47:45:147,0,45
chrVIII	12546	.	T	C	83.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.371;DP=44;Dels=0.00;FS=2.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=3;MQRankSum=4.561;QD=1.89;ReadPosRankSum=-3.722;SB=-2.042e+00	GT:AD:DP:GQ:PL	0/1:18,26:44:48:113,0,48
chrVIII	12548	.	C	T	95.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233;DP=44;Dels=0.00;FS=2.803;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.26;MQ0=3;MQRankSum=4.777;QD=2.16;ReadPosRankSum=-4.074;SB=-3.006e+00	GT:AD:DP:GQ:PL	0/1:18,26:44:29:125,0,29
chrVIII	12557	.	A	G	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=16.3582;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=3;MQRankSum=4.617;QD=0.87;ReadPosRankSum=-4.250;SB=0.631	GT:AD:DP:GQ:PL	0/1:18,20:38:53:63,0,53
chrVIII	12563	.	T	C	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.8519;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=3;MQRankSum=4.645;QD=1.03;ReadPosRankSum=-3.222;SB=0.062	GT:AD:DP:GQ:PL	0/1:18,16:34:54:65,0,54
chrVIII	12605	.	G	A	165.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.12;MQ0=1;QD=10.32;SB=-7.442e-02	GT:AD:DP:GQ:PL	1/1:0,16:16:21:198,21,0
chrVIII	12606	.	G	C	115.20	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.96;MQ0=1;MQRankSum=1.240;QD=7.68;ReadPosRankSum=1.488;SB=-3.995e+00	GT:AD:DP:GQ:PL	0/1:1,14:15:2:144,0,2
chrVIII	12608	.	A	G	116.20	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.96;MQ0=1;MQRankSum=1.240;QD=7.75;ReadPosRankSum=1.488;SB=-4.100e+00	GT:AD:DP:GQ:PL	0/1:2,13:15:2:145,0,2
chrVIII	12613	.	T	A	155.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.97;MQ0=0;QD=11.08;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:21:188,21,0
chrVIII	12616	.	T	A	158.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;MQRankSum=0.913;QD=8.32;ReadPosRankSum=2.178;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:2,17:19:21:191,21,0
chrVIII	12630	.	A	G	247	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=16.47;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:30:280,30,0
chrVIII	12669	.	C	G	386	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.54;MQ0=0;QD=16.78;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:48:419,48,0
chrVIII	12721	.	T	A	497	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=13.08;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:57:530,57,0
chrVIII	12722	.	T	G	495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=40;Dels=0.00;FS=6.591;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.62;MQ0=0;MQRankSum=-0.714;QD=12.37;ReadPosRankSum=2.327;SB=-1.550e+02	GT:AD:DP:GQ:PL	1/1:2,38:40:57:528,57,0
chrVIII	12758	.	A	G	657	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=12.40;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:78:690,78,0
chrVIII	12780	.	A	G	867	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=14.45;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:900,99,0
chrVIII	12931	.	G	A	524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.300;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=7.3153;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;MQRankSum=1.625;QD=16.37;ReadPosRankSum=1.408;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:57:557,57,0
chrVIII	12946	.	G	C	374	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.58;MQ0=0;QD=14.38;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:42:407,42,0
chrVIII	12972	.	T	C	414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-0.347;QD=11.83;ReadPosRankSum=1.634;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:48:447,48,0
chrVIII	13244	.	C	T	1396	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.52;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1429,144,0
chrVIII	13408	.	A	C	2090	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.093;DP=103;Dels=0.00;FS=5.077;HaplotypeScore=5.1438;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;MQRankSum=-1.160;QD=20.29;ReadPosRankSum=1.665;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2123,207,0
chrVIII	13429	.	G	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=21.17;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2531,270,0
chrVIII	13526	.	A	G	3081	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=23.17;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,130:133:99:3114,327,0
chrVIII	13561	.	G	A	3302.01	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=24.46;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3302,340,0
chrVIII	13589	.	A	G	2751	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=117;Dels=0.00;FS=10.571;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.032;QD=23.51;ReadPosRankSum=2.366;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:2,115:117:99:2784,294,0
chrVIII	13703	.	T	C	2543	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.8835;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.92;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2576,273,0
chrVIII	13851	.	G	A	3164	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=19.65;SB=-2.256e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3197,333,0
chrVIII	13855	.	C	T	3142	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=19.89;SB=-2.214e+03	GT:AD:DP:GQ:PL	1/1:0,157:158:99:3175,327,0
chrVIII	13872	.	G	C	2986	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=18.78;SB=-1.965e+03	GT:AD:DP:GQ:PL	1/1:0,158:159:99:3019,324,0
chrVIII	13934	.	A	G	2263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=6.849;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.059;QD=21.55;ReadPosRankSum=2.403;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:2,103:105:99:2296,249,0
chrVIII	14034	.	A	C	3178	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.89;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3211,330,0
chrVIII	14130	.	G	C	3027	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.93;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:3060,321,0
chrVIII	14146	.	C	T	2921	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8376;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.01;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2954,309,0
chrVIII	14262	.	T	A	1603	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1393;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.04;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1636,168,0
chrVIII	14308	.	A	G	1599	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=18.17;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1632,177,0
chrVIII	14338	.	G	A	2227	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.25;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2260,243,0
chrVIII	14381	.	T	C	2550	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.77;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,107:112:99:2583,276,0
chrVIII	14452	.	T	G	2393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.707;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=1.091;QD=21.95;ReadPosRankSum=1.668;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2426,252,0
chrVIII	14457	.	T	G	2411	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.72;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2444,267,0
chrVIII	14579	.	C	T	2969	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.20;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,126:128:99:3002,315,0
chrVIII	14584	.	G	C	2402	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.4855;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.02;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2435,267,0
chrVIII	14600	.	G	A	1931	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.76;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1964,213,0
chrVIII	14669	.	C	T	1995	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.17;SB=-1.292e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2028,207,0
chrVIII	14685	.	T	C	1881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.4365;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=1.119;QD=19.59;ReadPosRankSum=0.469;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1914,177,0
chrVIII	14729	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=17.96;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1955,201,0
chrVIII	14784	.	A	G	2278	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.09;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2311,249,0
chrVIII	14833	.	C	T	2816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.202;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=0.484;QD=24.92;ReadPosRankSum=1.451;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2849,294,0
chrVIII	14882	.	G	A	2404	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.47;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2437,249,0
chrVIII	14965	.	C	T	1525	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.55;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1558,159,0
chrVIII	15038	.	G	C	1665	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.06;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1698,177,0
chrVIII	15117	.	A	G	1392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=7.454;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.000;QD=22.10;ReadPosRankSum=1.431;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1425,150,0
chrVIII	15146	.	C	T	1228	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=21.54;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1261,129,0
chrVIII	15168	.	C	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=17.50;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1188,129,0
chrVIII	15239	.	A	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.8634;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.97;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1711,180,0
chrVIII	15293	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.98;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1616,174,0
chrVIII	15490	.	G	A	1789	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=62.11;MQ0=0;QD=22.36;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1822,192,0
chrVIII	15569	.	A	T	2092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.366;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.798;QD=23.24;ReadPosRankSum=1.693;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2125,219,0
chrVIII	15638	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.9845;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.87;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1316,138,0
chrVIII	15653	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.97;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1251,135,0
chrVIII	15755	.	T	C	1391	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.577;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.7158;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=1.262;QD=17.17;ReadPosRankSum=1.689;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1424,131,0
chrVIII	15928	.	T	C	1772	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.15;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1805,195,0
chrVIII	16099	.	G	T	1600	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=22.54;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1633,168,0
chrVIII	16157	.	C	T	1421	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.53;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1454,147,0
chrVIII	16161	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=22.13;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1516,153,0
chrVIII	16210	.	C	G	1288	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.77;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1321,138,0
chrVIII	16308	.	T	C	1045	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.42;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1078,114,0
chrVIII	16326	.	G	A	929	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=15.75;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:962,99,0
chrVIII	16353	.	T	C	794	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=38.7629;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=13.93;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:87:827,87,0
chrVIII	16403	.	G	A	1383	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.34;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1416,147,0
chrVIII	16671	.	A	G	1722	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=23.27;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1755,189,0
chrVIII	16733	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=20.09;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1520,162,0
chrVIII	16735	.	G	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=21.89;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1609,165,0
chrVIII	16774	.	C	T	1541	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=20.82;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1574,168,0
chrVIII	16886	.	G	C	1944	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.60;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1977,213,0
chrVIII	16906	.	A	C	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=1.192;QD=21.81;ReadPosRankSum=1.597;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1734,189,0
chrVIII	17120	.	A	C	1441	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.13;MQ0=0;QD=18.71;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1474,153,0
chrVIII	17127	.	T	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=64.4762;MLEAC=2;MLEAF=1.00;MQ=35.75;MQ0=0;QD=16.95;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1423,147,0
chrVIII	17132	.	T	G	1125	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=66.4510;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=14.42;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1158,126,0
chrVIII	17151	.	A	G	890	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=13.48;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:923,99,0
chrVIII	17157	.	A	G	864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;MQRankSum=0.142;QD=13.94;ReadPosRankSum=1.675;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:96:897,96,0
chrVIII	17359	.	A	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.53;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1768,186,0
chrVIII	17641	.	G	A	1074	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.06;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1107,114,0
chrVIII	17751	.	G	T	1150	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=1.672;QD=20.18;ReadPosRankSum=1.611;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1183,105,0
chrVIII	17937	.	A	G	926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.575;QD=21.05;ReadPosRankSum=1.654;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:959,102,0
chrVIII	18093	.	T	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.57;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1344,144,0
chrVIII	18107	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.38;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1293,138,0
chrVIII	18197	.	A	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.81;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1105,117,0
chrVIII	18198	.	A	T	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.135;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-1.124;QD=19.53;ReadPosRankSum=1.611;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1146,117,0
chrVIII	18210	.	G	A	977	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.09;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1010,102,0
chrVIII	18450	.	G	A	2021	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=24.06;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2054,210,0
chrVIII	18542	.	T	C	1804	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=-0.660;QD=21.22;ReadPosRankSum=1.691;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1837,198,0
chrVIII	18573	.	T	C	1505	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.90;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1538,162,0
chrVIII	18702	.	A	G	1718	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=83;Dels=0.00;FS=8.042;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=0.077;QD=20.70;ReadPosRankSum=2.357;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:2,78:83:99:1751,183,0
chrVIII	18744	.	A	G	1754	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=22.78;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1787,198,0
chrVIII	18917	.	G	A	4275.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=25.45;SB=-1.473e+03	GT:AD:DP:GQ:PL	1/1:0,168:168:99:4275,433,0
chrVIII	18957	.	T	C	3539.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.171;QD=24.75;ReadPosRankSum=1.708;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:1,141:143:99:3539,364,0
chrVIII	18989	.	A	G	2809	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.64;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2842,300,0
chrVIII	19035	.	G	A	2397	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=25.23;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2430,246,0
chrVIII	19094	.	C	T	1877	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.33;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1910,195,0
chrVIII	19101	.	A	G	1749	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=6.6079;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=20.34;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1782,183,0
chrVIII	19172	.	G	A	2075	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.15;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2108,219,0
chrVIII	19181	.	G	A	2290	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=18.93;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2323,243,0
chrVIII	19253	.	A	G	2812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.664;QD=21.14;ReadPosRankSum=1.706;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:1,132:133:99:2845,303,0
chrVIII	19355	.	A	G	1934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.315;QD=21.98;ReadPosRankSum=1.693;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1967,207,0
chrVIII	19808	.	G	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1570,165,0
chrVIII	19914	.	C	T	1901	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.35;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1934,201,0
chrVIII	20045	.	G	T	2179	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.01;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2212,231,0
chrVIII	20117	.	T	C	2184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.962;QD=22.06;ReadPosRankSum=1.697;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2217,237,0
chrVIII	20294	.	G	T	2029	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.92;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2062,219,0
chrVIII	20318	.	G	A	1740	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=18.32;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1773,195,0
chrVIII	20573	.	C	T	2564	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=21.91;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2597,276,0
chrVIII	20657	.	G	T	2266	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.1860;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.89;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2299,237,0
chrVIII	20795	.	C	T	1996	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=1.9497;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.37;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2029,210,0
chrVIII	20806	.	G	A	2019	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0711;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.79;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2052,213,0
chrVIII	20852	.	G	A	2166	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.63;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2199,225,0
chrVIII	20919	.	A	T	1865	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=99;Dels=0.00;FS=2.592;HaplotypeScore=3.9195;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-1.526;QD=18.84;ReadPosRankSum=2.846;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:3,95:99:99:1898,204,0
chrVIII	20921	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=6.2294;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.96;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1891,198,0
chrVIII	20993	.	C	T	2320	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.17;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2353,246,0
chrVIII	21004	.	G	A	2241	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.83;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2274,243,0
chrVIII	21033	.	A	T	2421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=108;Dels=0.00;FS=2.074;HaplotypeScore=8.6097;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.708;QD=22.42;ReadPosRankSum=2.953;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:4,104:108:99:2454,255,0
chrVIII	21160	.	C	T	2474	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=24.02;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2507,258,0
chrVIII	21296	.	T	C	2344	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3634;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=24.67;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2377,255,0
chrVIII	21541	.	A	C	1228	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=16.16;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1261,141,0
chrVIII	21552	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=16.41;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1362,144,0
chrVIII	21579	.	G	A	1172	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=16.51;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1205,123,0
chrVIII	21580	.	C	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=16.43;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1216,123,0
chrVIII	21612	.	C	T	850	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=15.45;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:883,93,0
chrVIII	21696	.	C	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.88;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1302,132,0
chrVIII	21768	.	T	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.52;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1059,114,0
chrVIII	22121	.	C	T	1992	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2913;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.16;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2025,207,0
chrVIII	22159	.	T	G	2014	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.43;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2047,216,0
chrVIII	22160	.	G	C	2000	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=21.28;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2033,216,0
chrVIII	22203	.	C	T	1741	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.92;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1774,183,0
chrVIII	22253	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.067;QD=21.69;ReadPosRankSum=1.687;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1725,186,0
chrVIII	22430	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.12;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1197,123,0
chrVIII	22464	.	C	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.76;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1590,165,0
chrVIII	22661	.	G	C	1242	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.03;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:62:99:1275,135,0
chrVIII	22684	.	T	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.05;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1176,132,0
chrVIII	22766	.	T	C	1007	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.98;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1040,114,0
chrVIII	22804	.	G	A	593	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=13.79;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:63:626,63,0
chrVIII	22813	.	T	C	636	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.654;QD=14.13;ReadPosRankSum=1.655;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:72:669,72,0
chrVIII	22833	.	G	A	691	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=12.56;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:78:724,78,0
chrVIII	22834	.	T	G	678	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;MQRankSum=-1.361;QD=12.11;ReadPosRankSum=1.670;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:78:711,78,0
chrVIII	23105	.	T	C	1200	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;MQRankSum=0.999;QD=23.08;ReadPosRankSum=1.666;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1233,132,0
chrVIII	23604	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.4848;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.52;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1589,162,0
chrVIII	23611	.	T	C	1483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=3.058;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=1.203;QD=17.87;ReadPosRankSum=2.391;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1516,165,0
chrVIII	23641	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=18.88;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1600,174,0
chrVIII	23734	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.0092;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.07;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1371,141,0
chrVIII	23964	.	C	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.88;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1476,150,0
chrVIII	24674	.	C	T	1851	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1884,195,0
chrVIII	24712	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.3082;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.91;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1683,177,0
chrVIII	24799	.	A	G	1759	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.54;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1792,192,0
chrVIII	24817	.	T	C	1702	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.76;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1735,183,0
chrVIII	25004	.	C	T	2100	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.83;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2133,222,0
chrVIII	25276	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.93;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1700,174,0
chrVIII	25318	.	C	T	1920	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.57;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1953,201,0
chrVIII	25348	.	A	G	1786	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.52;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1819,195,0
chrVIII	25432	.	G	A	1978	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.00;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2011,216,0
chrVIII	25522	.	G	T	2791	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=23.45;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2824,291,0
chrVIII	25552	.	C	A	2256	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=22.12;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2289,234,0
chrVIII	25581	.	T	C	1362	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.66;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1395,147,0
chrVIII	25673	.	T	A	795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=66;Dels=0.00;FS=21.331;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=0.921;QD=12.05;ReadPosRankSum=2.157;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:5,61:66:87:828,87,0
chrVIII	25834	.	G	A	1945	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.61;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1978,201,0
chrVIII	25892	.	C	T	1393	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=17.20;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1426,147,0
chrVIII	25898	.	C	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=17.74;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1381,138,0
chrVIII	25911	.	T	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=17.59;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1229,132,0
chrVIII	25945	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.24;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1341,138,0
chrVIII	26177	.	C	T	1074	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=20.26;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1107,117,0
chrVIII	26183	.	G	A	926	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=16.84;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:959,105,0
chrVIII	26184	.	T	C	913	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.23;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:946,102,0
chrVIII	26753	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.07;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1711,174,0
chrVIII	26783	.	T	C	1203	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.51;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1236,132,0
chrVIII	26825	.	C	A	1103	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.05;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1136,117,0
chrVIII	27080	.	A	G	1795	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.17;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1828,201,0
chrVIII	27293	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.397;QD=18.39;ReadPosRankSum=1.676;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,61:64:99:1210,129,0
chrVIII	27858	.	G	C	2592	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.54;SB=-1.466e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2625,279,0
chrVIII	27895	.	A	C	2898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.503;QD=21.15;ReadPosRankSum=1.579;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:1,135:137:99:2931,306,0
chrVIII	27988	.	A	C	3563.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.99;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:3563,378,0
chrVIII	28030	.	C	T	2341	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=24.39;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2374,249,0
chrVIII	28064	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=19.20;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1627,168,0
chrVIII	28073	.	C	T	1361	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=17.45;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1394,147,0
chrVIII	28335	.	A	G	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=0.742;QD=19.89;ReadPosRankSum=1.691;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1704,180,0
chrVIII	28356	.	T	C	1726	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.93;MQ0=0;QD=18.76;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1759,186,0
chrVIII	28362	.	G	T	1771	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.04;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1804,189,0
chrVIII	28416	.	C	T	2184	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=19.50;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2217,249,0
chrVIII	28452	.	T	C	2425	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=117;Dels=0.00;FS=3.569;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.119;QD=20.73;ReadPosRankSum=1.702;SB=-1.411e+03	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2458,261,0
chrVIII	28477	.	T	C	2331	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=-1.126;QD=19.26;ReadPosRankSum=1.703;SB=-1.593e+03	GT:AD:DP:GQ:PL	1/1:1,119:121:99:2364,246,0
chrVIII	28691	.	C	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.77;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1768,186,0
chrVIII	28758	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.0231;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.64;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1581,162,0
chrVIII	28917	.	A	G	1785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.564;QD=20.06;ReadPosRankSum=1.576;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1818,198,0
chrVIII	29141	.	T	C	1705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.855;QD=22.73;ReadPosRankSum=1.686;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1738,177,0
chrVIII	29709	.	T	A	1613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.198;QD=23.04;ReadPosRankSum=1.683;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1646,171,0
chrVIII	29863	.	G	A	809	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.73;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:842,87,0
chrVIII	30017	.	T	C	1724	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1757,192,0
chrVIII	30051	.	C	T	2014	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2047,210,0
chrVIII	30386	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.62;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1435,144,0
chrVIII	30556	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.23;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1487,153,0
chrVIII	30659	.	T	C	1251	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=5.082;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.896;QD=21.57;ReadPosRankSum=1.673;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1284,135,0
chrVIII	30979	.	C	T	856	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.21;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:889,99,0
chrVIII	31011	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.14;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1162,120,0
chrVIII	31041	.	G	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1322;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.25;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1591,168,0
chrVIII	31175	.	A	C	2285	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.05;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2318,249,0
chrVIII	31191	.	A	G	2111	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.22;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2144,228,0
chrVIII	31196	.	T	G	1824	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.73;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1857,195,0
chrVIII	31221	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.92;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1351,141,0
chrVIII	31447	.	T	C	2495	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.10;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2528,264,0
chrVIII	31482	.	A	G	2234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.6441;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.040;QD=24.02;ReadPosRankSum=2.396;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:2,90:93:99:2267,237,0
chrVIII	31566	.	A	G	1724	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.4053;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.10;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1757,192,0
chrVIII	31709	.	T	C	2048	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.01;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2081,225,0
chrVIII	31980	.	A	G	3006	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.44;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3039,324,0
chrVIII	32029	.	G	A	2424	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.5290;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.45;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2457,264,0
chrVIII	32064	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.68;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2013,216,0
chrVIII	32088	.	A	C	1637	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.39;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1670,177,0
chrVIII	32115	.	A	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.53;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1821,195,0
chrVIII	32175	.	A	G	2244	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=20.59;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2277,240,0
chrVIII	32190	.	G	A	2505	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.37;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2538,270,0
chrVIII	32578	.	C	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.50;SB=-1.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1359,147,0
chrVIII	32614	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.03;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1597,165,0
chrVIII	32625	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.71;SB=-9.101e+01	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1596,165,0
chrVIII	32783	.	T	G	869	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,50:50:96:902,96,0
chrVIII	32801	.	T	G	752	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.35;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:46:78:785,78,0
chrVIII	32836	.	G	T	444	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=12.69;SB=-6.536e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:57:477,57,0
chrVIII	32859	.	G	A	346	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=23.07;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:39:379,39,0
chrVIII	33105	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3459;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.69;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1638,171,0
chrVIII	33167	.	G	A	1737	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.12;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1770,183,0
chrVIII	33337	.	G	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1114,117,0
chrVIII	33397	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1087,114,0
chrVIII	33844	.	G	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.65;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1267,135,0
chrVIII	34071	.	C	T	1496	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.07;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1529,165,0
chrVIII	34347	.	A	G	1184	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.53;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1217,129,0
chrVIII	34368	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.52;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1159,123,0
chrVIII	34469	.	T	G	1771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.245;DP=101;Dels=0.00;FS=24.369;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-1.330;QD=17.53;ReadPosRankSum=4.299;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:7,94:101:99:1804,186,0
chrVIII	34480	.	C	T	1885	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.66;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1918,201,0
chrVIII	34565	.	G	C	2633	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=24.61;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2666,285,0
chrVIII	34710	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.51;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1541,165,0
chrVIII	35149	.	C	T	2628	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.53;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2661,285,0
chrVIII	35271	.	T	G	1313	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.75;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1346,141,0
chrVIII	35378	.	A	G	625	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=5;QD=18.94;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:72:658,72,0
chrVIII	35627	.	C	T	2204	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=25.63;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2237,234,0
chrVIII	35762	.	G	A	928	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.66;MQ0=5;QD=17.19;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:961,102,0
chrVIII	35854	.	C	A	525	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=1;QD=15.91;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:57:558,57,0
chrVIII	35975	.	A	G	615	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=15.77;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:69:648,69,0
chrVIII	36028	.	C	T	991	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;QD=18.35;SB=-6.001e+01	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1024,105,0
chrVIII	36040	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.13;MQ0=0;QD=19.47;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1026,108,0
chrVIII	36042	.	T	G	968	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8401;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=18.62;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1001,105,0
chrVIII	36052	.	A	G	919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=39.62;MQ0=0;MQRankSum=0.439;QD=19.15;ReadPosRankSum=2.348;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:2,46:48:99:952,102,0
chrVIII	36073	.	C	T	692	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=19.77;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:75:725,75,0
chrVIII	36128	.	T	C	240	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.7183;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=12.63;SB=-5.902e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:30:273,30,0
chrVIII	36306	.	C	T	1015	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.30;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1048,111,0
chrVIII	36501	.	C	G	850	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=22.97;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:93:883,93,0
chrVIII	37675	.	A	G	2067	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.31;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2100,231,0
chrVIII	37789	.	G	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.83;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1583,168,0
chrVIII	37876	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=21.69;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1920,204,0
chrVIII	37897	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=17.16;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1457,162,0
chrVIII	37900	.	G	A	1347	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=16.63;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1380,150,0
chrVIII	37931	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=99;Dels=0.00;FS=5.855;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.847;QD=17.06;ReadPosRankSum=2.929;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:3,96:99:99:1722,183,0
chrVIII	37969	.	G	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.68;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1658,171,0
chrVIII	38056	.	A	G	996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=5.898;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-0.049;QD=14.23;ReadPosRankSum=0.940;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1029,111,0
chrVIII	38083	.	T	C	946	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=13.71;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:979,102,0
chrVIII	38092	.	G	A	875	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=12.68;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:93:908,93,0
chrVIII	38116	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=12.92;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:976,105,0
chrVIII	38190	.	C	T	1668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.214;QD=22.54;ReadPosRankSum=0.498;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1701,174,0
chrVIII	38317	.	G	A	1603	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=23.23;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1636,174,0
chrVIII	38427	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.16;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1451,153,0
chrVIII	38619	.	T	C	915	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=44.9094;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=14.76;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:948,102,0
chrVIII	38887	.	T	C	2420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.396;QD=23.50;ReadPosRankSum=1.698;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2453,261,0
chrVIII	38923	.	T	C	2058	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.50;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2091,222,0
chrVIII	39238	.	G	C	2454	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.31;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2487,264,0
chrVIII	39327	.	A	G	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.678;QD=18.22;ReadPosRankSum=1.678;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1199,126,0
chrVIII	39521	.	C	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=62.3041;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.72;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1306,141,0
chrVIII	39534	.	A	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.312;DP=73;Dels=0.01;FS=10.696;HaplotypeScore=262.7334;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=1.284;QD=0.16;ReadPosRankSum=-3.254;SB=1.24	GT:AD:DP:GQ:PL	1/1:68,4:72:6:43,6,0
chrVIII	39721	.	G	A	759	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.46;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:792,84,0
chrVIII	39746	.	C	T	445	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=19.8902;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=14.83;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:48:478,48,0
chrVIII	39974	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.70;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1130,114,0
chrVIII	40215	.	A	G	965	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=45;Dels=0.00;FS=3.103;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.986;QD=21.44;ReadPosRankSum=2.338;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:2,42:45:99:998,105,0
chrVIII	40287	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1054,117,0
chrVIII	40729	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1423,144,0
chrVIII	40899	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1273,135,0
chrVIII	40973	.	C	G	890	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.35;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:99:923,99,0
chrVIII	41118	.	T	C	1593	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.96;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1626,174,0
chrVIII	41245	.	T	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1393,147,0
chrVIII	41712	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.46;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:99:1299,135,0
chrVIII	41918	.	G	T	2048	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.76;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2081,219,0
chrVIII	42147	.	G	A	2802	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9004;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.55;SB=-1.494e+03	GT:AD:DP:GQ:PL	1/1:0,128:130:99:2835,297,0
chrVIII	42255	.	G	A	2450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.588;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.6022;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-1.206;QD=21.49;ReadPosRankSum=1.237;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2483,267,0
chrVIII	42258	.	A	G	2488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.01;FS=3.050;HaplotypeScore=10.6333;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=-0.640;QD=22.02;ReadPosRankSum=1.701;SB=-1.510e+03	GT:AD:DP:GQ:PL	1/1:1,110:112:99:2521,261,0
chrVIII	42306	.	G	A	2136	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.15;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2169,222,0
chrVIII	42501	.	C	T	3593.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.95;SB=-1.861e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3593,370,0
chrVIII	42537	.	G	A	3384.01	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.88;SB=-1.829e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3384,354,0
chrVIII	42616	.	G	A	2129	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=23.14;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2162,231,0
chrVIII	42646	.	G	A	1764	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.60;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1797,183,0
chrVIII	42655	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=86;Dels=0.00;FS=3.628;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;MQRankSum=0.856;QD=17.73;ReadPosRankSum=1.649;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:1,82:86:99:1558,165,0
chrVIII	42709	.	C	T	2209	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.08;SB=-1.499e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2242,234,0
chrVIII	42946	.	T	C	1853	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.60;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1886,198,0
chrVIII	43928	.	G	T	1988	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.24;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2021,207,0
chrVIII	44731	.	T	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.03;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1223,132,0
chrVIII	44760	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=17.59;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1423,156,0
chrVIII	44776	.	C	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.55;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1591,165,0
chrVIII	44997	.	A	C	2192	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:2225,231,0
chrVIII	45156	.	T	C	1824	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=25.69;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1857,198,0
chrVIII	45250	.	A	G	1812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.549;QD=22.10;ReadPosRankSum=0.718;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1845,201,0
chrVIII	45793	.	C	A	2919	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.8745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.95;SB=-1.558e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2952,303,0
chrVIII	46055	.	A	G	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.397;QD=22.05;ReadPosRankSum=1.690;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1863,198,0
chrVIII	46220	.	A	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.01;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1784,183,0
chrVIII	46274	.	C	T	1572	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.56;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1605,165,0
chrVIII	46337	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.00;FS=3.053;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.263;QD=22.95;ReadPosRankSum=2.248;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:2,59:62:99:1456,159,0
chrVIII	46646	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.36;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1509,156,0
chrVIII	47072	.	A	G	1828	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1861,195,0
chrVIII	47797	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.80;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1537,162,0
chrVIII	47927	.	C	G	1010	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=24.63;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1043,114,0
chrVIII	48088	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=7.6187;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=14.67;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1295,135,0
chrVIII	48187	.	G	A	3395.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=13.7076;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.97;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,169:169:99:3395,372,0
chrVIII	48217	.	A	C	1764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.971;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=1.8305;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-2.876;QD=14.00;ReadPosRankSum=0.788;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:7,119:126:99:1797,195,0
chrVIII	48220	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.047;DP=121;Dels=0.00;FS=2.281;HaplotypeScore=2.8278;MLEAC=2;MLEAF=1.00;MQ=39.63;MQ0=0;MQRankSum=-2.925;QD=12.36;ReadPosRankSum=1.316;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:7,114:121:99:1529,171,0
chrVIII	48235	.	A	G	941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.435;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=101.9118;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;MQRankSum=-3.901;QD=8.79;ReadPosRankSum=2.028;SB=-4.612e+02	GT:AD:DP:GQ:PL	1/1:10,97:107:86:974,86,0
chrVIII	48240	.	C	G	750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.664;DP=106;Dels=0.00;FS=8.188;HaplotypeScore=191.6046;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;MQRankSum=-2.314;QD=7.08;ReadPosRankSum=1.334;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:8,98:106:63:783,63,0
chrVIII	48299	.	T	C	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;MQRankSum=-0.232;QD=14.16;ReadPosRankSum=2.307;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1010,108,0
chrVIII	48365	.	T	G	1240	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5246;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.38;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1273,138,0
chrVIII	48551	.	A	G	3667.01	PASS	AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=21.07;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,174:174:99:3667,382,0
chrVIII	48651	.	T	C	2061	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.90;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2094,219,0
chrVIII	48939	.	T	C	919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=3.104;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.627;QD=19.55;ReadPosRankSum=1.585;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:952,99,0
chrVIII	48948	.	C	T	1121	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.02;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1154,123,0
chrVIII	49098	.	A	G	1847	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.48;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1880,204,0
chrVIII	49196	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.70;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1471,159,0
chrVIII	49378	.	T	A	119.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DP=107;Dels=0.00;FS=3.940;HaplotypeScore=7.4248;MLEAC=1;MLEAF=0.500;MQ=40.88;MQ0=0;MQRankSum=-1.904;QD=1.11;ReadPosRankSum=-0.377;SB=-3.630e+02	GT:AD:DP:GQ:PL	0/1:54,53:107:99:149,0,618
chrVIII	49395	.	G	C	196.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.537;DP=104;Dels=0.01;FS=7.195;HaplotypeScore=11.6871;MLEAC=1;MLEAF=0.500;MQ=40.85;MQ0=0;MQRankSum=-3.118;QD=1.88;ReadPosRankSum=-2.869;SB=-1.000e+02	GT:AD:DP:GQ:PL	0/1:64,38:103:99:226,0,358
chrVIII	49398	.	C	T	88.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;DP=103;Dels=0.01;FS=22.397;HaplotypeScore=12.2980;MLEAC=1;MLEAF=0.500;MQ=43.11;MQ0=0;MQRankSum=-2.325;QD=0.85;ReadPosRankSum=-2.082;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,33:102:99:118,0,435
chrVIII	49399	.	G	A	51.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008;DP=101;Dels=0.00;FS=15.167;HaplotypeScore=11.5093;MLEAC=1;MLEAF=0.500;MQ=42.71;MQ0=0;MQRankSum=-3.359;QD=0.51;ReadPosRankSum=-1.242;SB=-2.101e+01	GT:AD:DP:GQ:PL	0/1:72,29:101:81:81,0,418
chrVIII	49400	.	T	C	53.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DP=101;Dels=0.00;FS=15.167;HaplotypeScore=10.5199;MLEAC=1;MLEAF=0.500;MQ=42.71;MQ0=0;MQRankSum=-3.697;QD=0.52;ReadPosRankSum=-1.588;SB=-1.501e+01	GT:AD:DP:GQ:PL	0/1:72,29:101:83:83,0,452
chrVIII	49405	.	G	A	51.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;DP=101;Dels=0.00;FS=15.257;HaplotypeScore=11.1509;MLEAC=1;MLEAF=0.500;MQ=42.45;MQ0=0;MQRankSum=-3.165;QD=0.51;ReadPosRankSum=-2.605;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:74,27:101:81:81,0,518
chrVIII	49406	.	T	C	45.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;DP=103;Dels=0.00;FS=14.893;HaplotypeScore=20.9503;MLEAC=1;MLEAF=0.500;MQ=42.86;MQ0=0;MQRankSum=-4.066;QD=0.44;ReadPosRankSum=-2.822;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:76,27:103:75:75,0,598
chrVIII	49420	.	T	C	783.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.518;DP=102;Dels=0.00;FS=18.143;HaplotypeScore=19.4431;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=0;MQRankSum=4.212;QD=7.68;ReadPosRankSum=4.985;SB=-7.908e+02	GT:AD:DP:GQ:PL	0/1:19,83:102:0:812,0,0
chrVIII	49600	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=78;Dels=0.00;FS=6.669;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=1.073;QD=18.47;ReadPosRankSum=2.386;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1474,156,0
chrVIII	49626	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4939;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=19.41;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1547,168,0
chrVIII	49718	.	A	G	1928	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.47;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1961,207,0
chrVIII	49817	.	A	C	1931	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.45;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1964,210,0
chrVIII	49887	.	T	G	1628	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.85;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1661,180,0
chrVIII	49899	.	T	C	1551	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=19.63;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1584,174,0
chrVIII	49977	.	G	A	1658	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=16.1504;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.26;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1691,174,0
chrVIII	50022	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.10;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1504,165,0
chrVIII	50050	.	A	G	1785	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=18.59;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,93:96:99:1818,198,0
chrVIII	50268	.	C	T	1864	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.19;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1897,195,0
chrVIII	50321	.	G	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=24.81;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1894,198,0
chrVIII	50351	.	T	C	1597	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.88;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1630,174,0
chrVIII	50566	.	C	G	1876	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.17;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1909,201,0
chrVIII	50683	.	G	A	2649	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.65;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2682,291,0
chrVIII	50752	.	T	C	1728	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;MQRankSum=-0.650;QD=21.60;ReadPosRankSum=1.689;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1761,186,0
chrVIII	50759	.	C	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.26;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1649,174,0
chrVIII	50841	.	T	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.23;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1137,120,0
chrVIII	50980	.	C	T	1953	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=141;Dels=0.01;FS=4.066;HaplotypeScore=24.0854;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;MQRankSum=-0.243;QD=13.85;ReadPosRankSum=-1.195;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:14,126:140:99:1986,210,0
chrVIII	51053	.	C	A	2480	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0612;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=21.75;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2513,261,0
chrVIII	51089	.	G	A	2311	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=13.4510;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.58;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2344,249,0
chrVIII	51217	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.14;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1722,180,0
chrVIII	51309	.	T	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.46;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1854,201,0
chrVIII	51314	.	C	A	1910	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.99;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1943,201,0
chrVIII	51344	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=20.26;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1694,183,0
chrVIII	51378	.	A	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.57;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1537,159,0
chrVIII	51408	.	C	A	1063	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=14.56;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1096,120,0
chrVIII	51422	.	G	C	932	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=15.53;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:965,105,0
chrVIII	51441	.	T	C	934	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.5733;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=11.12;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:967,102,0
chrVIII	51686	.	G	A	890	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=19.35;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:923,93,0
chrVIII	51773	.	T	C	1074	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=18.52;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1107,117,0
chrVIII	51856	.	G	T	1014	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.04;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1047,111,0
chrVIII	51891	.	T	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.98;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1462,165,0
chrVIII	51937	.	C	G	1557	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.33;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1590,165,0
chrVIII	52183	.	G	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.70;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1894,195,0
chrVIII	52373	.	T	C	1992	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.42;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2025,213,0
chrVIII	52419	.	G	A	2070	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.91;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2103,225,0
chrVIII	52666	.	G	A	2099	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=19.99;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2132,228,0
chrVIII	52712	.	C	T	2052	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.0311;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.37;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2085,216,0
chrVIII	52925	.	A	G	1754	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.472;QD=22.78;ReadPosRankSum=1.687;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1787,186,0
chrVIII	52980	.	T	C	1512	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=49.15;MQ0=0;QD=20.16;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1545,162,0
chrVIII	52993	.	G	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.65;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1304,135,0
chrVIII	52999	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=19.26;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1343,138,0
chrVIII	53006	.	T	A	1297	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=19.07;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1330,144,0
chrVIII	53097	.	G	T	3115	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.90;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3148,327,0
chrVIII	53214	.	T	C	3459.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=9.6649;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.251;QD=24.88;ReadPosRankSum=1.707;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,137:139:99:3459,369,0
chrVIII	53336	.	T	C	1443	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=0.577;QD=23.66;ReadPosRankSum=1.675;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1476,156,0
chrVIII	53380	.	C	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.09;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1690,177,0
chrVIII	53483	.	G	A	2143	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.43;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2176,225,0
chrVIII	53579	.	T	C	1901	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.20;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1934,207,0
chrVIII	53843	.	T	C	1162	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.35;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1195,129,0
chrVIII	53882	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.601;QD=23.06;ReadPosRankSum=1.025;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1163,120,0
chrVIII	54035	.	G	A	1059	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.76;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1092,114,0
chrVIII	54138	.	G	T	508	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.94;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:57:541,57,0
chrVIII	54245	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.18;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1198,132,0
chrVIII	54264	.	G	A	1387	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6114;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.74;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1420,147,0
chrVIII	54302	.	C	T	1384	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.46;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1417,147,0
chrVIII	55333	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=17.57;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1579,171,0
chrVIII	55348	.	A	G	1377	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=14.81;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1410,153,0
chrVIII	55489	.	G	A	1742	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9768;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.14;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1775,204,0
chrVIII	55637	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=17.77;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1419,150,0
chrVIII	55714	.	A	G	1017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.163;QD=19.19;ReadPosRankSum=1.667;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1050,111,0
chrVIII	56081	.	T	C	1005	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=21.85;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1038,114,0
chrVIII	56225	.	T	C	989	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=15.22;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1022,114,0
chrVIII	56235	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=14.42;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1028,114,0
chrVIII	56250	.	C	T	1138	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=15.81;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1171,123,0
chrVIII	56364	.	T	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=18.27;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1239,135,0
chrVIII	56423	.	C	T	425.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;DP=66;Dels=0.00;FS=2.125;HaplotypeScore=8.2717;MLEAC=1;MLEAF=0.500;MQ=33.53;MQ0=0;MQRankSum=-1.264;QD=6.44;ReadPosRankSum=5.461;SB=-3.620e+02	GT:AD:DP:GQ:PL	0/1:26,40:66:22:455,0,22
chrVIII	56538	.	T	A	2076	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=6.661;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.067;QD=22.57;ReadPosRankSum=2.396;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2109,222,0
chrVIII	56604	.	G	A	2992	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=26.25;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,112:114:99:3025,315,0
chrVIII	57772	.	T	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.23;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1583,171,0
chrVIII	58390	.	A	G	3029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.9511;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.505;QD=24.83;ReadPosRankSum=1.675;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,121:122:99:3062,324,0
chrVIII	58676	.	A	G	1655	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.24;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1688,177,0
chrVIII	58677	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=2.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.087;QD=17.06;ReadPosRankSum=2.276;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:2,97:99:99:1722,180,0
chrVIII	58754	.	A	G	2285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=1.466;QD=19.53;ReadPosRankSum=1.643;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2318,240,0
chrVIII	58857	.	C	T	1031	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=15.86;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1064,114,0
chrVIII	59022	.	T	C	2297	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.88;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2330,240,0
chrVIII	59929	.	C	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.05;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1316,135,0
chrVIII	59936	.	G	C	1144	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=17.87;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1177,126,0
chrVIII	62587	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=13.22;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1395,144,0
chrVIII	64748	.	A	G	1898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=3.550;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.877;QD=24.33;ReadPosRankSum=1.687;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1931,210,0
chrVIII	65200	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.87;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1640,180,0
chrVIII	65380	.	A	G	1501	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.56;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1534,159,0
chrVIII	65566	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.45;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1685,180,0
chrVIII	89155	.	T	C	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500;DP=102;Dels=0.00;FS=15.829;HaplotypeScore=2.5721;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=36;MQRankSum=-3.716;QD=0.47;ReadPosRankSum=2.153;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,25:102:78:78,0,1246
chrVIII	89477	.	T	A	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.53;MQ0=33;MQRankSum=-1.196;QD=0.38;ReadPosRankSum=0.784;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:42,11:53:50:50,0,247
chrVIII	116213	.	G	A	2398	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.28;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2431,261,0
chrVIII	116310	.	C	T	2536	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=23.92;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2569,264,0
chrVIII	117504	.	G	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=19.06;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,60:63:99:1234,135,0
chrVIII	117534	.	A	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=16.39;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1557,165,0
chrVIII	117556	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;QD=15.90;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1559,168,0
chrVIII	117572	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.02;FS=0.000;HaplotypeScore=19.3282;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=13.45;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1378,141,0
chrVIII	117586	.	A	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=13.20;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1406,153,0
chrVIII	117605	.	G	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=11.58;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1203,129,0
chrVIII	117608	.	A	G	1174	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=12.23;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1207,126,0
chrVIII	118068	.	A	G	2054	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.94;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2087,228,0
chrVIII	118187	.	T	C	1829	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.32;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1862,198,0
chrVIII	121738	.	A	T	833	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.9706;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=16.02;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:96:866,96,0
chrVIII	122024	.	G	C	1305	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6981;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.39;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1338,141,0
chrVIII	122099	.	G	A	1898	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9658;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.87;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1931,201,0
chrVIII	122453	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.85;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1427,153,0
chrVIII	122655	.	G	A	1052	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.92;SB=-2.330e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1085,111,0
chrVIII	123177	.	G	A	1168	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.24;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1201,132,0
chrVIII	123801	.	C	A	757	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=17.20;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:84:790,84,0
chrVIII	123926	.	C	T	850	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.00;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:90:883,90,0
chrVIII	123929	.	A	G	816	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.65;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:849,90,0
chrVIII	123960	.	A	G	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.753;DP=71;Dels=0.00;FS=8.865;HaplotypeScore=12.5749;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=1;MQRankSum=1.376;QD=0.20;ReadPosRankSum=0.814;SB=1.24	GT:AD:DP:GQ:PL	1/1:54,17:71:6:45,6,0
chrVIII	124092	.	T	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=25.28;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1575,165,0
chrVIII	124744	.	G	A	1998	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=25.95;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2031,207,0
chrVIII	125040	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=21.12;ReadPosRankSum=1.682;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1490,162,0
chrVIII	125140	.	T	C	1475	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.654;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.020;QD=20.21;ReadPosRankSum=1.685;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1508,165,0
chrVIII	125771	.	C	T	1739	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2969;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.01;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1772,189,0
chrVIII	125937	.	T	C	978	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.73;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1011,108,0
chrVIII	125980	.	C	T	1046	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.35;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1079,117,0
chrVIII	126255	.	T	C	1150	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.079;QD=21.70;ReadPosRankSum=1.667;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1183,123,0
chrVIII	126572	.	T	C	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.266;QD=24.56;ReadPosRankSum=1.688;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1973,210,0
chrVIII	126715	.	G	A	1814	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=20.16;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1847,189,0
chrVIII	126792	.	C	T	2422	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.02;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.22;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2455,255,0
chrVIII	126873	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.62;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1621,174,0
chrVIII	127010	.	A	T	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.0280;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=0.762;QD=20.45;ReadPosRankSum=1.594;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1567,162,0
chrVIII	127040	.	A	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.75;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1686,174,0
chrVIII	127673	.	G	A	1929	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=27.56;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1962,198,0
chrVIII	127727	.	C	G	957	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=25.18;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:990,108,0
chrVIII	127758	.	C	T	863	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=23.97;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:93:896,93,0
chrVIII	127766	.	G	C	930	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=22.68;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:963,105,0
chrVIII	127853	.	A	G	1343	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.16;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1376,144,0
chrVIII	127914	.	G	A	1617	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.78;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1650,171,0
chrVIII	128112	.	G	A	1326	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.39;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1359,141,0
chrVIII	128119	.	C	T	1209	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.21;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1242,129,0
chrVIII	128376	.	A	C	1762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.943;QD=22.30;ReadPosRankSum=1.688;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1795,192,0
chrVIII	128736	.	G	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.26;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1901,198,0
chrVIII	129195	.	A	T	2929	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=25.69;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2962,306,0
chrVIII	129223	.	A	T	2018	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.4292;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.38;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2051,219,0
chrVIII	129445	.	A	G	3284.01	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.1430;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.07;SB=-1.499e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3284,345,0
chrVIII	130043	.	C	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.86;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1432,150,0
chrVIII	130265	.	C	T	1118	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.70;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1151,123,0
chrVIII	130533	.	G	A	1280	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=17.30;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1313,141,0
chrVIII	130538	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=16.15;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1228,129,0
chrVIII	130619	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.04;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1254,132,0
chrVIII	130652	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.10;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1359,141,0
chrVIII	131072	.	T	C	1963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.242;QD=21.11;ReadPosRankSum=1.658;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1996,207,0
chrVIII	131216	.	C	T	896	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.92;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:929,96,0
chrVIII	131324	.	T	C	1611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=5.464;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.966;QD=16.96;ReadPosRankSum=1.623;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1644,180,0
chrVIII	131505	.	T	A	1582	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.7967;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.010;QD=21.38;ReadPosRankSum=1.684;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1615,174,0
chrVIII	131549	.	G	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=52.6154;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.86;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1368,144,0
chrVIII	131685	.	A	G	855	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.43;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:888,93,0
chrVIII	131716	.	T	C	1395	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.51;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1428,147,0
chrVIII	131900	.	T	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=23.63;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1829,189,0
chrVIII	131994	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7294;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.95;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1387,153,0
chrVIII	132095	.	C	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.33;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1253,129,0
chrVIII	132165	.	T	C	1628	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.00;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1661,171,0
chrVIII	132728	.	A	C	1403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.4977;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.142;QD=23.00;ReadPosRankSum=1.278;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1436,153,0
chrVIII	132840	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.04;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1510,162,0
chrVIII	132907	.	G	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=22.26;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1970,201,0
chrVIII	132926	.	G	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=20.22;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1772,183,0
chrVIII	132947	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=20.94;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1394,144,0
chrVIII	132971	.	G	A	763	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.61;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:84:796,84,0
chrVIII	132987	.	G	A	432	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=15.43;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:48:465,48,0
chrVIII	133140	.	G	A	288	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=0;QD=7.20;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:33:321,33,0
chrVIII	133235	.	T	C	1066	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=26.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1099,120,0
chrVIII	133485	.	C	A	2355	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.7384;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=20.30;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2388,255,0
chrVIII	133487	.	C	G	2306	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.01;FS=0.000;HaplotypeScore=3.7384;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=19.88;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2339,246,0
chrVIII	133760	.	A	C	2157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.027;DP=113;Dels=0.00;FS=9.506;HaplotypeScore=103.8523;MLEAC=2;MLEAF=1.00;MQ=42.45;MQ0=0;MQRankSum=-1.473;QD=19.09;ReadPosRankSum=2.902;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:3,110:113:99:2190,249,0
chrVIII	133952	.	A	T	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=1;MQRankSum=-0.313;QD=20.95;ReadPosRankSum=1.607;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1793,192,0
chrVIII	133963	.	T	C	1675	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=1;QD=19.71;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1708,183,0
chrVIII	133967	.	A	C	1634	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=1;QD=19.45;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1667,180,0
chrVIII	134157	.	T	C	2352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=-0.551;QD=18.23;ReadPosRankSum=1.705;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2385,258,0
chrVIII	134172	.	C	T	1834	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;QD=16.09;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1867,195,0
chrVIII	134180	.	G	A	1637	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=15.89;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1670,174,0
chrVIII	134208	.	G	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.83;MQ0=0;QD=10.88;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1175,132,0
chrVIII	134209	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;MQRankSum=-0.346;QD=10.90;ReadPosRankSum=1.468;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,104:106:99:1188,132,0
chrVIII	134240	.	A	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=12.29;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1250,129,0
chrVIII	134264	.	T	G	130.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=227.9616;MLEAC=1;MLEAF=0.500;MQ=40.24;MQ0=0;MQRankSum=-2.752;QD=1.49;ReadPosRankSum=3.991;SB=-6.900e+02	GT:AD:DP:GQ:PL	0/1:11,76:87:99:160,0,101
chrVIII	134320	.	C	T	2004	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.09;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2037,210,0
chrVIII	134509	.	T	C	3012	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=20.92;SB=-1.847e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:3045,321,0
chrVIII	134524	.	G	A	2965	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=20.45;SB=-1.929e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:2998,309,0
chrVIII	134907	.	G	T	1846	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.61;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1879,201,0
chrVIII	135000	.	A	G	1577	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.89;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1610,168,0
chrVIII	135150	.	A	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.02;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1299,138,0
chrVIII	135273	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1529,156,0
chrVIII	136628	.	T	G	1592	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=71;Dels=0.00;FS=3.266;HaplotypeScore=8.1768;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.633;QD=22.42;ReadPosRankSum=1.683;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1625,171,0
chrVIII	136744	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.07;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1177,120,0
chrVIII	137028	.	A	G	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.643;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.370;QD=21.01;ReadPosRankSum=1.681;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1441,159,0
chrVIII	137643	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=16.84;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1111,114,0
chrVIII	137662	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=17.31;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1141,117,0
chrVIII	137688	.	A	G	863	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=13.92;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:96:896,96,0
chrVIII	137850	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.63;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1250,135,0
chrVIII	137880	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.704;QD=19.97;ReadPosRankSum=1.678;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1311,138,0
chrVIII	137997	.	G	A	938	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.84;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:99:971,99,0
chrVIII	138375	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.97;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1270,132,0
chrVIII	138502	.	T	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.62;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1474,162,0
chrVIII	138587	.	T	C	1180	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.70;MQ0=0;QD=25.65;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1213,126,0
chrVIII	138671	.	T	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.80;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1232,132,0
chrVIII	138717	.	T	C	1362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.444;QD=22.70;ReadPosRankSum=1.617;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1395,153,0
chrVIII	142155	.	G	A	2341	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.0012;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.19;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2374,252,0
chrVIII	142191	.	C	T	2242	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.68;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2275,234,0
chrVIII	142299	.	T	C	1475	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.2139;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.885;QD=16.39;ReadPosRankSum=1.270;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1508,162,0
chrVIII	142302	.	A	G	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.2139;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.405;QD=15.28;ReadPosRankSum=1.548;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1469,156,0
chrVIII	142335	.	T	C	1364	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=14.83;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,89:92:99:1397,147,0
chrVIII	142800	.	G	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=23.17;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1284,138,0
chrVIII	142863	.	A	G	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.174;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.155;QD=22.28;ReadPosRankSum=1.668;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1236,129,0
chrVIII	143214	.	A	T	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.561;HaplotypeScore=5.7274;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.082;QD=21.70;ReadPosRankSum=1.650;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1856,189,0
chrVIII	143824	.	A	G	1560	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.94;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1593,171,0
chrVIII	143930	.	C	T	1954	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=21.71;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1987,201,0
chrVIII	144253	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=49;Dels=0.00;FS=2.829;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.677;QD=21.57;ReadPosRankSum=2.244;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:2,46:49:99:1090,114,0
chrVIII	144280	.	G	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=25.19;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1393,144,0
chrVIII	144393	.	A	G	2047	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.450;QD=23.53;ReadPosRankSum=1.692;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:1,85:87:99:2080,222,0
chrVIII	144688	.	T	C	1674	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.03;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1707,177,0
chrVIII	144730	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.42;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1378,144,0
chrVIII	144796	.	C	G	1280	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.65;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1313,141,0
chrVIII	144910	.	C	T	1043	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.68;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1076,114,0
chrVIII	145045	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.59;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1519,162,0
chrVIII	145315	.	G	C	1115	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.23;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1148,123,0
chrVIII	145363	.	C	T	1000	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1033,108,0
chrVIII	145441	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.44;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1250,135,0
chrVIII	145684	.	C	T	1690	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=11.1147;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.53;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1723,180,0
chrVIII	145768	.	A	G	2109	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2142,228,0
chrVIII	146174	.	C	G	5475.01	PASS	AC=2;AF=1.00;AN=2;DP=224;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=24.44;SB=-1.935e+03	GT:AD:DP:GQ:PL	1/1:0,222:224:99:5475,600,0
chrVIII	146218	.	T	C	4253.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=25.02;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,169:170:99:4253,459,0
chrVIII	146323	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=19.00;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1325,141,0
chrVIII	146331	.	T	G	1027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;MQRankSum=-0.984;QD=16.56;ReadPosRankSum=2.756;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:3,59:62:71:1060,71,0
chrVIII	146334	.	T	G	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.345;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;MQRankSum=-1.646;QD=16.02;ReadPosRankSum=2.054;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:4,57:61:64:1010,64,0
chrVIII	146671	.	A	T	34.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=15;Dels=0.00;FS=34.776;HaplotypeScore=13.8704;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=1;MQRankSum=1.468;QD=2.27;ReadPosRankSum=-3.165;SB=-2.982e+00	GT:AD:DP:GQ:PL	0/1:7,8:15:64:64,0,108
chrVIII	146672	.	G	A	11.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=14.8638;MLEAC=1;MLEAF=0.500;MQ=32.80;MQ0=1;MQRankSum=-1.895;QD=0.28;ReadPosRankSum=2.598;SB=-4.007e+00	GT:AD:DP:GQ:PL	0/1:35,3:40:41:41,0,205
chrVIII	146677	.	A	G	221.02	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;DP=48;Dels=0.00;FS=2.658;HaplotypeScore=16.4411;MLEAC=1;MLEAF=0.500;MQ=37.76;MQ0=1;MQRankSum=-1.433;QD=4.60;ReadPosRankSum=0.614;SB=-4.560e+02	GT:AD:DP:GQ:PL	0/1:4,42:48:23:251,0,23
chrVIII	146719	.	A	T	2884	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.8315;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=18.97;SB=-1.853e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:2917,303,0
chrVIII	146800	.	A	G	3964.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.125;QD=22.40;ReadPosRankSum=1.673;SB=-2.133e+03	GT:AD:DP:GQ:PL	1/1:1,176:177:99:3964,420,0
chrVIII	146822	.	C	A	3032	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.69;SB=-1.830e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3065,324,0
chrVIII	146839	.	C	G	3175	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=7.4250;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.22;SB=-1.584e+03	GT:AD:DP:GQ:PL	1/1:0,152:157:99:3208,351,0
chrVIII	146940	.	T	A	2372	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;QD=22.17;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2405,255,0
chrVIII	146947	.	G	A	2128	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=20.86;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2161,234,0
chrVIII	146980	.	C	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=20.48;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2531,264,0
chrVIII	147004	.	C	G	2429	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=20.07;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2462,261,0
chrVIII	147047	.	C	T	3820.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.18;SB=-1.838e+03	GT:AD:DP:GQ:PL	1/1:0,155:158:99:3820,391,0
chrVIII	147161	.	C	A	2850	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5457;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=23.36;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2883,303,0
chrVIII	147327	.	A	G	3111	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=1.344;QD=23.22;ReadPosRankSum=1.706;SB=-1.749e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:3144,330,0
chrVIII	147459	.	C	T	2185	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.30;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2218,234,0
chrVIII	147504	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.642;QD=22.65;ReadPosRankSum=0.652;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1777,192,0
chrVIII	147540	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.18;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1365,141,0
chrVIII	147558	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=18.77;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1197,126,0
chrVIII	147573	.	A	C	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.422;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.051;QD=20.04;ReadPosRankSum=0.152;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1496,133,0
chrVIII	147667	.	G	C	1512	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.18;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1545,159,0
chrVIII	147741	.	A	G	1032	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=14.33;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1065,114,0
chrVIII	147742	.	C	T	1103	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=15.32;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1136,117,0
chrVIII	147745	.	C	T	992	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=13.78;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1025,114,0
chrVIII	147843	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=24.17;SB=-9.201e+01	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1435,156,0
chrVIII	148168	.	G	A	1747	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=74.6763;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.57;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1780,192,0
chrVIII	148221	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.49;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1529,159,0
chrVIII	148275	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.56;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1351,147,0
chrVIII	148297	.	T	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=16.75;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1289,132,0
chrVIII	148317	.	C	G	979	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=11.80;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1012,105,0
chrVIII	148334	.	T	A	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;MQRankSum=0.051;QD=12.90;ReadPosRankSum=1.664;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1362,147,0
chrVIII	148409	.	T	G	2530	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=23.43;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2563,273,0
chrVIII	148418	.	C	T	2283	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;QD=20.94;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2316,240,0
chrVIII	148490	.	A	G	2619	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=24.03;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2652,279,0
chrVIII	148542	.	A	G	1166	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.76;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1199,129,0
chrVIII	148734	.	G	A	3640.01	PASS	AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=4.9794;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.57;SB=-1.759e+03	GT:AD:DP:GQ:PL	1/1:0,177:177:99:3640,390,0
chrVIII	148745	.	C	A	3097	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.82;SB=-1.643e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3130,324,0
chrVIII	148762	.	C	T	2411	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.61;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2444,264,0
chrVIII	148863	.	G	A	1626	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1659,171,0
chrVIII	148943	.	T	G	1972	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7530;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=19.52;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2005,216,0
chrVIII	148956	.	A	G	1938	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.98;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1971,210,0
chrVIII	148990	.	G	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.26;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1512,156,0
chrVIII	149040	.	C	G	883	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=8.0307;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=18.40;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:96:916,96,0
chrVIII	149077	.	C	T	746	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.16;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:78:779,78,0
chrVIII	149162	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.84;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1387,144,0
chrVIII	149249	.	A	T	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.164;DP=73;Dels=0.01;FS=9.182;HaplotypeScore=55.4139;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=1.442;QD=17.81;ReadPosRankSum=2.242;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1333,165,0
chrVIII	149250	.	T	A	1207	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=73;Dels=0.01;FS=8.957;HaplotypeScore=55.4139;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=1.765;QD=16.53;ReadPosRankSum=2.244;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1240,156,0
chrVIII	149305	.	G	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.99;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1616,168,0
chrVIII	149347	.	C	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.8631;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.53;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1388,147,0
chrVIII	149376	.	C	A	654	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=16.77;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:687,69,0
chrVIII	149385	.	C	T	697	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.21;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:730,75,0
chrVIII	149390	.	C	G	761	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=15.85;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:794,87,0
chrVIII	149430	.	G	A	1009	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=18.69;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1042,108,0
chrVIII	149512	.	G	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.15;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1535,162,0
chrVIII	150845	.	G	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=60.9501;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.89;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1600,165,0
chrVIII	152094	.	A	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.91;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1339,141,0
chrVIII	152121	.	G	A	1002	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.32;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1035,114,0
chrVIII	152274	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.60;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1570,165,0
chrVIII	152397	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1533,159,0
chrVIII	152946	.	G	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.66;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1116,117,0
chrVIII	153195	.	A	G	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.110;QD=21.15;ReadPosRankSum=1.688;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1704,183,0
chrVIII	153282	.	G	A	978	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1011,111,0
chrVIII	153420	.	G	A	1753	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.69;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1786,183,0
chrVIII	153651	.	G	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.74;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1316,135,0
chrVIII	153731	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=24.36;ReadPosRankSum=2.365;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1446,153,0
chrVIII	154047	.	G	A	2767	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.85;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2800,294,0
chrVIII	154076	.	C	T	2712	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=24.43;SB=-1.473e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2745,282,0
chrVIII	154167	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.04;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1485,156,0
chrVIII	154225	.	T	C	794	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=16.89;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:827,87,0
chrVIII	154229	.	C	T	799	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.58;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:832,90,0
chrVIII	154554	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.91;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1111,114,0
chrVIII	154571	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.89;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1370,141,0
chrVIII	154608	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.8235;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.62;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1446,150,0
chrVIII	154677	.	T	A	2178	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.33;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2211,231,0
chrVIII	154746	.	G	A	1918	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.56;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1951,201,0
chrVIII	154926	.	G	A	2155	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.68;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2188,228,0
chrVIII	155175	.	T	C	1849	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.41;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1882,201,0
chrVIII	155186	.	A	G	1849	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=22.83;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1882,195,0
chrVIII	155572	.	C	T	1131	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.85;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1164,123,0
chrVIII	155587	.	G	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.21;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1367,141,0
chrVIII	155735	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.52;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1410,144,0
chrVIII	156089	.	C	T	1284	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.75;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1317,138,0
chrVIII	156096	.	A	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.83;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1322,138,0
chrVIII	156307	.	T	C	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=3.582;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.973;QD=23.32;ReadPosRankSum=1.685;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1759,186,0
chrVIII	156420	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.71;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1532,168,0
chrVIII	156477	.	A	G	1523	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=4.011;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.051;QD=22.07;ReadPosRankSum=1.630;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1556,168,0
chrVIII	156690	.	A	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.38;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1337,141,0
chrVIII	156698	.	T	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.54;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1261,132,0
chrVIII	156724	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.63;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1271,132,0
chrVIII	156866	.	C	T	2060	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2093,225,0
chrVIII	157495	.	T	A	946	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=78;Dels=0.00;FS=3.050;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-0.773;QD=12.13;ReadPosRankSum=1.694;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:979,117,0
chrVIII	157497	.	A	T	1060	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=77;Dels=0.03;FS=7.089;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=0.617;QD=13.77;ReadPosRankSum=2.383;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1093,132,0
chrVIII	157678	.	G	A	2375	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.5089;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=26.69;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2408,243,0
chrVIII	157828	.	A	G	1740	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.00;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1773,192,0
chrVIII	159238	.	T	G	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.681;QD=18.53;ReadPosRankSum=1.630;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1293,144,0
chrVIII	161791	.	G	T	74.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.4871;MLEAC=1;MLEAF=0.500;MQ=56.85;MQ0=0;MQRankSum=-1.027;QD=4.93;ReadPosRankSum=-2.067;SB=-6.516e-03	GT:AD:DP:GQ:PL	0/1:7,8:15:58:104,0,58
chrVIII	162108	.	A	G	1748	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.13;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1781,195,0
chrVIII	164870	.	T	C	2448	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.55;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2481,258,0
chrVIII	164881	.	C	A	2521	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=5.8381;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.03;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,146:148:99:2554,264,0
chrVIII	165142	.	G	A	1219	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.2903;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=22.16;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1252,129,0
chrVIII	165278	.	C	T	2020	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.34;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2053,207,0
chrVIII	165719	.	G	A	983	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.86;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:99:1016,105,0
chrVIII	165835	.	G	A	1689	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6838;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.82;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1722,186,0
chrVIII	165867	.	T	G	1871	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=25.28;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1904,201,0
chrVIII	166195	.	A	G	2092	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.13;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2125,222,0
chrVIII	166209	.	C	T	2013	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.19;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2046,207,0
chrVIII	166541	.	G	A	1494	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.97;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1527,165,0
chrVIII	166604	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.97;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1191,126,0
chrVIII	166793	.	A	G	1807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.694;QD=20.53;ReadPosRankSum=2.337;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:2,85:88:99:1840,195,0
chrVIII	166937	.	G	A	859	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.09;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:892,93,0
chrVIII	166940	.	T	C	861	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=18.72;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:894,93,0
chrVIII	167064	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.83;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1125,120,0
chrVIII	167156	.	A	G	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.539;QD=21.10;ReadPosRankSum=1.694;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1953,204,0
chrVIII	167277	.	T	C	1116	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.74;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1149,120,0
chrVIII	167557	.	T	A	633	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=28.0287;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.78;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:69:666,69,0
chrVIII	167575	.	G	T	593	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.77;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:66:626,66,0
chrVIII	167593	.	T	C	551	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.68;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:60:584,60,0
chrVIII	167647	.	C	T	329	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=14.95;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:45:362,45,0
chrVIII	167656	.	T	C	617	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.362;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.867;QD=22.04;ReadPosRankSum=1.609;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:1,27:28:66:650,66,0
chrVIII	167785	.	T	C	633	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:69:666,69,0
chrVIII	168804	.	G	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.45;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1526,159,0
chrVIII	169388	.	A	G	1086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.274;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.645;QD=21.29;ReadPosRankSum=1.664;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1119,117,0
chrVIII	169493	.	G	A	1589	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.7849;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.37;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1622,168,0
chrVIII	169574	.	T	C	1932	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.1921;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.000;QD=23.85;ReadPosRankSum=1.689;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1965,210,0
chrVIII	169868	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.96;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1570,168,0
chrVIII	170595	.	C	T	731	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.61;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:764,78,0
chrVIII	171171	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.53;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1537,165,0
chrVIII	171273	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.50;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1263,129,0
chrVIII	171279	.	C	T	1202	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.08;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1235,132,0
chrVIII	171537	.	A	C	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.557;QD=20.82;ReadPosRankSum=1.547;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1199,126,0
chrVIII	171564	.	G	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.83;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1190,123,0
chrVIII	171761	.	G	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.04;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1642,174,0
chrVIII	172443	.	G	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.25;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1511,159,0
chrVIII	172560	.	G	T	1344	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.4398;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.40;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1377,144,0
chrVIII	172608	.	G	A	1150	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.54;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1183,126,0
chrVIII	172701	.	C	T	1728	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.140;QD=22.74;ReadPosRankSum=0.000;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1761,162,0
chrVIII	172837	.	C	G	1009	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.40;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1042,114,0
chrVIII	172909	.	C	T	1128	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.89;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1161,120,0
chrVIII	173207	.	A	G	1086	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=22.62;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1119,120,0
chrVIII	173271	.	A	G	801	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=22.25;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,35:36:90:834,90,0
chrVIII	173295	.	G	A	743	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.64;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,35:36:78:776,78,0
chrVIII	173412	.	G	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.51;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1234,126,0
chrVIII	173562	.	G	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7264;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.95;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1646,183,0
chrVIII	173637	.	G	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.57;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1586,162,0
chrVIII	173923	.	T	G	3292.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.2147;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.114;QD=24.03;ReadPosRankSum=1.631;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:1,136:137:99:3292,363,0
chrVIII	174093	.	T	C	1523	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.31;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1556,168,0
chrVIII	174120	.	A	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=16.98;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1425,150,0
chrVIII	174165	.	A	C	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.147;QD=19.99;ReadPosRankSum=1.635;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1452,156,0
chrVIII	175012	.	C	T	2115	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.1861;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.50;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2148,222,0
chrVIII	175141	.	T	C	2119	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.62;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2152,234,0
chrVIII	175263	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=6.284;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.223;QD=15.10;ReadPosRankSum=1.681;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:1,67:70:99:1090,114,0
chrVIII	175480	.	C	T	3628.01	PASS	AC=2;AF=1.00;AN=2;DP=176;Dels=0.01;FS=0.000;HaplotypeScore=30.4674;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.61;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:3628,387,0
chrVIII	175661	.	T	C	1342	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.14;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1375,150,0
chrVIII	175731	.	A	C	838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.499;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=0.184;QD=17.83;ReadPosRankSum=1.585;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:93:871,93,0
chrVIII	175734	.	A	C	877	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.49;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:910,96,0
chrVIII	176426	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.95;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1604,168,0
chrVIII	176679	.	T	C	954	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.71;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:987,108,0
chrVIII	176826	.	T	C	642	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.8196;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=12.84;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:72:675,72,0
chrVIII	177049	.	A	G	762	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.05;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:795,84,0
chrVIII	177113	.	C	T	704	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.33;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:78:737,78,0
chrVIII	177333	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.23;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1535,162,0
chrVIII	177610	.	T	C	1181	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=-0.278;QD=13.73;ReadPosRankSum=1.689;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:1,81:86:99:1214,132,0
chrVIII	177619	.	A	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1113;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=15.82;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1441,153,0
chrVIII	177793	.	C	G	2896	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.77;SB=-1.651e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2929,303,0
chrVIII	177867	.	A	G	2011	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=16.6895;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.45;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2044,222,0
chrVIII	178041	.	G	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.01;FS=0.000;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.24;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:1948,201,0
chrVIII	178104	.	C	T	3289.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;DP=157;Dels=0.00;FS=3.358;HaplotypeScore=6.9344;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;MQRankSum=-0.155;QD=20.95;ReadPosRankSum=-0.022;SB=-1.974e+03	GT:AD:DP:GQ:PL	1/1:1,156:157:99:3289,325,0
chrVIII	178121	.	G	A	3073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.2028;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;MQRankSum=0.540;QD=19.95;ReadPosRankSum=1.530;SB=-1.929e+03	GT:AD:DP:GQ:PL	1/1:1,153:154:99:3106,321,0
chrVIII	178125	.	A	G	2762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.106;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9191;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=1.024;QD=18.29;ReadPosRankSum=1.778;SB=-1.658e+03	GT:AD:DP:GQ:PL	1/1:2,148:151:99:2795,297,0
chrVIII	178134	.	C	T	2610	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2867;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=18.38;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2643,285,0
chrVIII	178196	.	C	A	1619	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=23.13;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1652,171,0
chrVIII	178230	.	A	G	1285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=0.760;QD=22.54;ReadPosRankSum=1.611;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1318,144,0
chrVIII	178242	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=21.53;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1260,135,0
chrVIII	178458	.	A	G	1408	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=18.05;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1441,147,0
chrVIII	178619	.	G	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1220;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=16.47;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1219,126,0
chrVIII	178632	.	A	G	1125	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.420;QD=17.05;ReadPosRankSum=1.627;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1158,126,0
chrVIII	178659	.	A	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=16.22;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1201,126,0
chrVIII	178672	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=80;Dels=0.00;FS=3.031;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;MQRankSum=-0.952;QD=15.82;ReadPosRankSum=2.231;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:2,77:80:99:1299,141,0
chrVIII	178799	.	T	C	1577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.008;QD=23.19;ReadPosRankSum=1.629;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1610,171,0
chrVIII	178843	.	C	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.14;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1768,183,0
chrVIII	178873	.	T	A	1545	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.14;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1578,159,0
chrVIII	178909	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1288,135,0
chrVIII	179026	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=23.22;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1380,144,0
chrVIII	179071	.	T	A	1189	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.82;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1222,126,0
chrVIII	179085	.	A	G	1041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.522;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.962;QD=19.28;ReadPosRankSum=1.604;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1074,114,0
chrVIII	179142	.	T	C	848	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=16.63;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:881,93,0
chrVIII	179241	.	C	T	992	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=18.37;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1025,108,0
chrVIII	179265	.	C	T	995	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.63;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1028,105,0
chrVIII	179402	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.030;QD=20.51;ReadPosRankSum=1.672;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1202,129,0
chrVIII	179572	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.80;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1247,132,0
chrVIII	179748	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.28;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1430,147,0
chrVIII	179923	.	C	T	1181	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.62;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1214,126,0
chrVIII	180100	.	G	A	675	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.76;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:75:708,75,0
chrVIII	180223	.	T	A	2318	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=27.27;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2351,240,0
chrVIII	180918	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.126;HaplotypeScore=6.7907;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.228;QD=21.63;ReadPosRankSum=1.687;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1677,183,0
chrVIII	181049	.	G	A	2294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.178;DP=107;Dels=0.00;FS=3.859;HaplotypeScore=10.5297;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.700;QD=21.44;ReadPosRankSum=1.149;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2327,240,0
chrVIII	181082	.	A	G	2424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;DP=113;Dels=0.00;FS=3.771;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-0.093;QD=21.45;ReadPosRankSum=-0.866;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2457,248,0
chrVIII	181124	.	T	G	2556	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3861;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=22.82;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2589,273,0
chrVIII	181132	.	A	G	2327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.117;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.610;QD=20.96;ReadPosRankSum=2.405;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:2,109:111:99:2360,252,0
chrVIII	181265	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.32;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1685,183,0
chrVIII	181842	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.99;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1364,144,0
chrVIII	182092	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.13;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1364,147,0
chrVIII	182852	.	T	C	1066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=48;Dels=0.00;FS=3.711;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.143;QD=22.21;ReadPosRankSum=1.659;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:1099,114,0
chrVIII	183402	.	G	A	2335	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.82;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2368,255,0
chrVIII	183482	.	A	G	1995	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.75;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2028,213,0
chrVIII	183721	.	T	C	2177	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=21.77;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2210,237,0
chrVIII	183728	.	G	A	2254	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=22.32;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2287,237,0
chrVIII	183741	.	C	T	2558	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=21.14;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2591,264,0
chrVIII	183744	.	C	T	2364	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.61;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2397,261,0
chrVIII	183845	.	T	C	2456	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.95;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2489,261,0
chrVIII	183913	.	C	G	1147	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.64;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1180,123,0
chrVIII	183923	.	T	C	1044	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.31;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1077,117,0
chrVIII	184025	.	T	C	1696	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=13.7507;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.444;QD=23.23;ReadPosRankSum=1.684;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1729,183,0
chrVIII	184065	.	A	G	2072	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=22.52;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2105,222,0
chrVIII	184104	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.83;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1461,165,0
chrVIII	184171	.	A	G	1520	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.807;DP=68;Dels=0.00;FS=6.172;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.583;QD=22.35;ReadPosRankSum=2.897;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:3,65:68:99:1553,162,0
chrVIII	184258	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.459;QD=21.84;ReadPosRankSum=1.687;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1693,180,0
chrVIII	184281	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=22.93;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2051,213,0
chrVIII	184323	.	A	G	1972	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.20;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2005,210,0
chrVIII	184350	.	A	G	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.544;QD=22.56;ReadPosRankSum=1.683;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1635,177,0
chrVIII	184572	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.96;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1605,171,0
chrVIII	184766	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.14;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1617,165,0
chrVIII	184847	.	A	G	971	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.42;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1004,108,0
chrVIII	184872	.	A	G	1076	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.93;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1109,120,0
chrVIII	185022	.	G	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.58;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1433,159,0
chrVIII	185064	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.90;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1539,168,0
chrVIII	185403	.	C	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.70;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1471,153,0
chrVIII	185480	.	G	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.84;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1567,162,0
chrVIII	185547	.	C	T	1620	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.76;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1653,171,0
chrVIII	185766	.	C	T	1280	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.98;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1313,150,0
chrVIII	186657	.	C	T	1659	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.73;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1692,174,0
chrVIII	186876	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=19.80;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1102,114,0
chrVIII	186921	.	G	A	878	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.41;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:911,96,0
chrVIII	187320	.	A	C	1077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=3.819;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.405;QD=20.32;ReadPosRankSum=1.667;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1110,117,0
chrVIII	187527	.	T	A	1491	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.42;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1524,156,0
chrVIII	187908	.	G	A	952	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=16.41;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:985,111,0
chrVIII	188673	.	C	A	2509	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.63;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2542,264,0
chrVIII	188821	.	C	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=23.19;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1471,153,0
chrVIII	188841	.	A	G	1190	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.19;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1223,132,0
chrVIII	188853	.	G	A	1352	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=21.12;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1385,144,0
chrVIII	189054	.	T	C	2133	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=60.45;MQ0=0;QD=17.77;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2166,231,0
chrVIII	189143	.	A	G	1460	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=18.96;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1493,156,0
chrVIII	189221	.	C	G	993	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.74;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1026,111,0
chrVIII	189356	.	G	A	2092	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.51;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2125,225,0
chrVIII	189608	.	A	G	881	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.27;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:914,102,0
chrVIII	190024	.	C	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1744,180,0
chrVIII	190064	.	T	C	1332	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1365,147,0
chrVIII	190671	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.63;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1136,123,0
chrVIII	190872	.	A	T	971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.075;QD=16.18;ReadPosRankSum=1.673;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1004,102,0
chrVIII	191072	.	T	C	1749	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.96;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1782,195,0
chrVIII	191248	.	A	G	864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=7.586;HaplotypeScore=6.0546;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.341;QD=21.60;ReadPosRankSum=2.327;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:2,38:40:99:897,99,0
chrVIII	191348	.	A	T	1194	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.95;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1227,129,0
chrVIII	191643	.	C	A	1427	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.30;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1460,150,0
chrVIII	191691	.	C	T	1383	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.64;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1416,150,0
chrVIII	192124	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.6999;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.90;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1287,138,0
chrVIII	192892	.	C	T	428	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=35.13;MQ0=3;QD=10.19;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:48:461,48,0
chrVIII	192904	.	A	T	261	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.03;MQ0=3;QD=6.37;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:30:294,30,0
chrVIII	192928	.	A	G	611	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=3;QD=11.75;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:69:644,69,0
chrVIII	192973	.	G	A	1634	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=1;QD=21.50;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1667,177,0
chrVIII	193075	.	G	A	604	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.36;MQ0=3;QD=10.60;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:66:637,66,0
chrVIII	193114	.	T	C	393	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.4693;MLEAC=2;MLEAF=1.00;MQ=22.00;MQ0=0;QD=7.71;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:45:426,45,0
chrVIII	193183	.	T	G	1318	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=37.96;MQ0=4;QD=17.81;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1351,141,0
chrVIII	193245	.	C	T	1766	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=3;QD=20.30;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1799,189,0
chrVIII	193626	.	G	C	1645	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8482;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=21.36;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1678,177,0
chrVIII	193633	.	A	G	1720	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5687;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.05;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1753,186,0
chrVIII	194308	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.749;DP=98;Dels=0.00;FS=4.940;HaplotypeScore=13.6358;MLEAC=2;MLEAF=1.00;MQ=43.81;MQ0=1;MQRankSum=3.239;QD=15.01;ReadPosRankSum=0.699;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:5,93:98:99:1504,117,0
chrVIII	194338	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.822;DP=85;Dels=0.00;FS=4.820;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=1;MQRankSum=1.767;QD=15.07;ReadPosRankSum=0.220;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:7,77:85:73:1314,73,0
chrVIII	196135	.	C	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8200;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=18.63;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1486,159,0
chrVIII	196160	.	G	A	1741	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.367;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.1980;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=-0.419;QD=17.95;ReadPosRankSum=-1.112;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1774,173,0
chrVIII	196468	.	A	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.75;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1577,168,0
chrVIII	196532	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.01;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1634,171,0
chrVIII	196732	.	T	C	1247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.300;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.950;QD=19.79;ReadPosRankSum=1.676;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1280,138,0
chrVIII	196831	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.28;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1370,147,0
chrVIII	197974	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1362,138,0
chrVIII	198244	.	T	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.40;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1265,129,0
chrVIII	198394	.	G	C	1779	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.6344;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.10;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1812,198,0
chrVIII	198549	.	T	C	1155	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.58;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1188,129,0
chrVIII	198648	.	A	G	2150	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.63;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2183,228,0
chrVIII	199410	.	C	T	1425	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.27;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1458,147,0
chrVIII	202737	.	A	C	1713	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.9158;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.25;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1746,186,0
chrVIII	204054	.	C	T	1858	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.22;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1891,198,0
chrVIII	204151	.	A	G	2258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=96;Dels=0.00;FS=10.815;HaplotypeScore=4.0958;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.885;QD=23.52;ReadPosRankSum=2.398;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:2,94:96:99:2291,249,0
chrVIII	204219	.	G	A	3107	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=14.0664;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.71;SB=-1.662e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3140,339,0
chrVIII	204693	.	A	T	2047	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=3.056;HaplotypeScore=8.9808;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.694;QD=23.26;ReadPosRankSum=2.252;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:2080,213,0
chrVIII	204882	.	C	T	2332	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.79;SB=-1.485e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2365,240,0
chrVIII	205191	.	A	C	1231	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.3285;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.99;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1264,135,0
chrVIII	205278	.	A	T	1762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.243;QD=19.15;ReadPosRankSum=1.582;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1795,189,0
chrVIII	205476	.	C	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.57;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1284,138,0
chrVIII	205941	.	A	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.37;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1251,138,0
chrVIII	206460	.	G	A	1512	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.39;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1545,159,0
chrVIII	207052	.	T	A	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.111;DP=111;Dels=0.00;FS=6.306;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.440;QD=18.20;ReadPosRankSum=2.247;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:2,109:111:99:2053,222,0
chrVIII	207624	.	C	T	2789	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=14.3974;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.45;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2822,297,0
chrVIII	207734	.	C	T	1460	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.55;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1493,153,0
chrVIII	208566	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=21.60;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1783,183,0
chrVIII	208592	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.29;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1711,186,0
chrVIII	209078	.	A	C	691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=64;Dels=0.00;FS=6.179;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=1.525;QD=10.80;ReadPosRankSum=2.604;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:87:724,87,0
chrVIII	209079	.	C	T	701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.541;DP=64;Dels=0.00;FS=6.179;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=1.334;QD=10.95;ReadPosRankSum=2.414;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:84:734,84,0
chrVIII	209095	.	C	A	938	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=14.00;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:971,99,0
chrVIII	209176	.	C	T	1098	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.93;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1131,120,0
chrVIII	209243	.	C	T	1789	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8631;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.80;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1822,192,0
chrVIII	210500	.	A	G	526	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:60:559,60,0
chrVIII	210710	.	A	T	807	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.69;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:840,87,0
chrVIII	211042	.	C	T	1398	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.47;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1431,147,0
chrVIII	211729	.	C	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.70;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1858,192,0
chrVIII	212293	.	C	T	3187	filter	AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.99;MQ0=33;QD=18.64;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,169:169:99:3220,336,0
chrVIII	212499	.	C	T	2403	filter	AC=2;AF=1.00;AN=2;DP=238;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=23.28;MQ0=110;QD=10.10;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,233:238:99:2436,264,0
chrVIII	212509	.	G	A	1924	filter	AC=2;AF=1.00;AN=2;DP=227;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.61;MQ0=121;QD=8.48;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,222:227:99:1957,201,0
chrVIII	212536	.	C	T	766	filter	AC=2;AF=1.00;AN=2;DP=185;Dels=0.01;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.32;MQ0=137;QD=4.14;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,182:184:90:799,90,0
chrVIII	212556	.	C	T	800	filter	AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.67;MQ0=153;QD=4.15;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,193:193:87:833,87,0
chrVIII	214291	.	C	T	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.32;MQ0=30;QD=0.79;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:6:58,6,0
chrVIII	215821	.	T	C	77.51	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.74;MQ0=27;QD=2.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:12:110,12,0
chrVIII	215912	.	T	C	725	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.61;MQ0=17;MQRankSum=0.387;QD=15.76;ReadPosRankSum=2.281;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,44:46:81:758,81,0
chrVIII	216123	.	C	T	1060	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=19;QD=16.83;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1093,114,0
chrVIII	216235	.	C	T	1466	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=1;QD=24.43;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1499,165,0
chrVIII	216338	.	C	G	2418	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=25.45;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2451,258,0
chrVIII	216563	.	T	C	2122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.709;QD=23.84;ReadPosRankSum=1.693;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:2155,228,0
chrVIII	216707	.	T	C	1989	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.56;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2022,213,0
chrVIII	216814	.	T	C	2614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=4.421;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.266;QD=21.78;ReadPosRankSum=1.674;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2647,291,0
chrVIII	217047	.	C	T	996	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:99:1029,105,0
chrVIII	217505	.	A	G	2145	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.67;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2178,237,0
chrVIII	217526	.	C	A	1813	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=19.71;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1846,192,0
chrVIII	217536	.	A	G	1687	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=16.87;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:1720,180,0
chrVIII	217604	.	G	A	2110	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.2677;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.75;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2143,222,0
chrVIII	218189	.	T	C	2645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=3.797;HaplotypeScore=147.1546;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;MQRankSum=-0.733;QD=16.23;ReadPosRankSum=1.690;SB=-1.782e+03	GT:AD:DP:GQ:PL	1/1:1,162:163:99:2678,291,0
chrVIII	218539	.	T	C	2259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=4.771;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.238;QD=22.15;ReadPosRankSum=1.698;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2292,237,0
chrVIII	219235	.	T	C	723	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:756,81,0
chrVIII	219407	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.431;HaplotypeScore=7.3641;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.652;QD=20.56;ReadPosRankSum=1.652;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1801,198,0
chrVIII	219461	.	C	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=20.29;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1088,111,0
chrVIII	219861	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.31;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1069,114,0
chrVIII	219876	.	C	T	873	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=17.12;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:96:906,96,0
chrVIII	219879	.	G	A	943	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=16.26;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:976,99,0
chrVIII	219926	.	T	C	1055	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.51;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1088,117,0
chrVIII	219934	.	T	C	1079	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=2.971;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=0.152;QD=14.78;ReadPosRankSum=2.382;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1112,114,0
chrVIII	219973	.	A	T	1585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=89;Dels=0.00;FS=3.534;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.142;QD=17.81;ReadPosRankSum=1.614;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1618,168,0
chrVIII	220140	.	T	C	1523	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.624;QD=20.04;ReadPosRankSum=1.547;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1556,162,0
chrVIII	220151	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.04;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1556,165,0
chrVIII	220155	.	T	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=20.59;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1536,162,0
chrVIII	221114	.	C	T	2285	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=26.26;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2318,237,0
chrVIII	221591	.	A	G	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.214;QD=23.30;ReadPosRankSum=1.685;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1734,192,0
chrVIII	221844	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.79;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1197,123,0
chrVIII	221939	.	G	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=16.94;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1219,129,0
chrVIII	222117	.	G	C	1577	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.71;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1610,165,0
chrVIII	222260	.	T	C	2418	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.93;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2451,261,0
chrVIII	222295	.	T	C	1638	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.82;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1671,180,0
chrVIII	222996	.	T	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.79;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1536,168,0
chrVIII	223354	.	C	T	1925	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.13;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1958,207,0
chrVIII	223429	.	C	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.64;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1787,189,0
chrVIII	223791	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=3.750;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.690;QD=21.23;ReadPosRankSum=1.649;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1816,189,0
chrVIII	223914	.	G	A	2384	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.37;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2417,246,0
chrVIII	224264	.	G	T	1436	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1469,159,0
chrVIII	224422	.	C	T	1760	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.56;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1793,186,0
chrVIII	224489	.	A	G	1759	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.10;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1792,189,0
chrVIII	224759	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.1034;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.96;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1437,153,0
chrVIII	225175	.	A	G	1469	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.6808;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.99;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1502,159,0
chrVIII	225467	.	G	C	2342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=4.508;HaplotypeScore=9.3333;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.696;QD=24.14;ReadPosRankSum=0.505;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:1,95:97:99:2375,252,0
chrVIII	225748	.	A	G	1753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.905;QD=19.70;ReadPosRankSum=1.614;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1786,192,0
chrVIII	225911	.	G	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.7652;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.46;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1986,210,0
chrVIII	226158	.	C	T	1313	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.8245;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=19.60;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1346,144,0
chrVIII	226482	.	G	A	1544	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.38;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1577,171,0
chrVIII	226659	.	G	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.26;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1953,207,0
chrVIII	226755	.	G	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.7728;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.44;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1940,201,0
chrVIII	226824	.	G	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7439;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.05;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,83:88:99:1621,168,0
chrVIII	227009	.	C	T	2322	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.22;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2355,255,0
chrVIII	227158	.	A	T	2284	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.58;SB=-1.562e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2317,234,0
chrVIII	227179	.	A	G	1953	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=18.96;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1986,210,0
chrVIII	227216	.	T	C	1319	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.9546;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;MQRankSum=0.591;QD=15.34;ReadPosRankSum=1.691;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1352,144,0
chrVIII	227218	.	G	A	1323	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1152;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=15.75;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1356,141,0
chrVIII	227221	.	G	A	1360	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.058;HaplotypeScore=7.9039;MLEAC=2;MLEAF=1.00;MQ=39.54;MQ0=0;MQRankSum=0.495;QD=16.19;ReadPosRankSum=0.165;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1393,144,0
chrVIII	227226	.	G	C	1259	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=4.006;HaplotypeScore=8.8157;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-0.563;QD=14.99;ReadPosRankSum=0.605;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1292,135,0
chrVIII	227567	.	T	C	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.369;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.457;QD=22.70;ReadPosRankSum=1.677;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1463,153,0
chrVIII	227951	.	A	C	771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.575;QD=16.76;ReadPosRankSum=1.654;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:87:804,87,0
chrVIII	228114	.	C	T	2316	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.49;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,99:103:99:2349,243,0
chrVIII	229059	.	G	C	1133	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1166,126,0
chrVIII	229142	.	T	C	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=60;Dels=0.00;FS=6.255;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-0.325;QD=19.27;ReadPosRankSum=2.277;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:2,55:60:99:1189,126,0
chrVIII	230092	.	C	G	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;DP=63;Dels=0.00;FS=12.927;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=2.792;QD=23.71;ReadPosRankSum=0.629;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:3,60:63:99:1527,112,0
chrVIII	231475	.	A	T	1496	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.00;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1529,156,0
chrVIII	235381	.	C	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2439;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.92;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1187,123,0
chrVIII	235729	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=55;Dels=0.00;FS=6.946;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.551;QD=19.55;ReadPosRankSum=2.226;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:1108,120,0
chrVIII	237138	.	T	C	188.03	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=14.46;SB=-3.878e-02	GT:AD:DP:GQ:PL	1/1:0,13:13:24:221,24,0
chrVIII	237146	.	G	A	165.06	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=11.79;SB=-7.062e-02	GT:AD:DP:GQ:PL	1/1:0,14:14:21:198,21,0
chrVIII	237219	.	A	C	573	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.22;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,26:27:66:606,66,0
chrVIII	237318	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.47;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1134,117,0
chrVIII	237528	.	T	A	693	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=23.90;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:75:726,75,0
chrVIII	237556	.	T	C	727	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.77;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:760,81,0
chrVIII	237729	.	A	T	1181	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=30.5793;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=17.63;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1214,129,0
chrVIII	237787	.	C	G	472	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=13.49;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:57:505,57,0
chrVIII	237816	.	T	A	619	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.979;DP=46;Dels=0.00;FS=6.214;HaplotypeScore=6.2279;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=0.756;QD=13.46;ReadPosRankSum=1.602;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:3,43:46:69:652,69,0
chrVIII	239033	.	G	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.18;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1562,162,0
chrVIII	242062	.	C	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=6.5742;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.14;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1671,171,0
chrVIII	242346	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.15;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1654,171,0
chrVIII	249226	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8007;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.02;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1354,144,0
chrVIII	249527	.	A	G	1835	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.38;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1868,198,0
chrVIII	250404	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.94;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1108,117,0
chrVIII	250559	.	G	A	1595	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=15.9419;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.55;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1628,171,0
chrVIII	250612	.	A	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.54;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1407,147,0
chrVIII	250766	.	G	T	1441	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.17;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1474,153,0
chrVIII	250913	.	A	T	962	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.47;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:995,102,0
chrVIII	250961	.	T	C	1059	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.26;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1092,117,0
chrVIII	251694	.	A	G	1014	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.88;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1047,114,0
chrVIII	251796	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.61;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1151,123,0
chrVIII	252153	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.26;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1162,123,0
chrVIII	252238	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.37;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1144,120,0
chrVIII	252321	.	C	T	2362	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.16;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2395,258,0
chrVIII	252398	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1412,156,0
chrVIII	252902	.	C	G	1612	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=17.91;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1645,183,0
chrVIII	252956	.	C	G	478	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=125.6127;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=5.56;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:57:511,57,0
chrVIII	252968	.	C	G	766	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=9.01;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:90:799,90,0
chrVIII	253019	.	C	T	965	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=11.77;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:998,105,0
chrVIII	253029	.	G	A	971	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=11.99;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1004,111,0
chrVIII	253088	.	G	A	917	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.5373;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=15.03;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:950,99,0
chrVIII	253175	.	T	C	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=5.244;HaplotypeScore=7.4522;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.482;QD=18.42;ReadPosRankSum=1.625;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1820,192,0
chrVIII	253492	.	A	C	1553	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.57;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1586,171,0
chrVIII	253629	.	T	A	2607	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=24.83;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2640,273,0
chrVIII	253745	.	T	A	1598	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.03;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1631,177,0
chrVIII	253858	.	T	C	2670	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;DP=112;Dels=0.00;FS=3.037;HaplotypeScore=5.8987;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-0.143;QD=23.84;ReadPosRankSum=2.406;SB=-1.423e+03	GT:AD:DP:GQ:PL	1/1:2,110:112:99:2703,294,0
chrVIII	253949	.	T	C	3180	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=23.73;SB=-1.748e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:3213,348,0
chrVIII	253999	.	T	C	1988	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.61;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2021,213,0
chrVIII	254007	.	T	C	2049	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=21.12;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2082,219,0
chrVIII	254117	.	C	T	2449	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.6706;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.75;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2482,264,0
chrVIII	254158	.	A	T	2985	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=2.992;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.334;QD=21.17;ReadPosRankSum=2.310;SB=-1.713e+03	GT:AD:DP:GQ:PL	1/1:2,139:141:99:3018,312,0
chrVIII	254195	.	C	T	3414.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.46;SB=-1.895e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3414,354,0
chrVIII	254246	.	A	C	3011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=136;Dels=0.00;FS=6.862;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.040;QD=22.14;ReadPosRankSum=2.377;SB=-1.629e+03	GT:AD:DP:GQ:PL	1/1:2,134:136:99:3044,324,0
chrVIII	254330	.	T	C	2040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.420;HaplotypeScore=5.5184;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.438;QD=24.58;ReadPosRankSum=1.690;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2073,216,0
chrVIII	254816	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.53;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1691,186,0
chrVIII	255011	.	A	G	1217	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.3963;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=1.613;QD=20.98;ReadPosRankSum=1.015;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1250,138,0
chrVIII	255290	.	T	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1044,114,0
chrVIII	255648	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.411;HaplotypeScore=7.6777;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.408;QD=20.16;ReadPosRankSum=1.579;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1404,156,0
chrVIII	256009	.	T	A	2826	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.25;SB=-1.550e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2859,297,0
chrVIII	256019	.	A	G	2769	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.7559;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.07;SB=-1.775e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2802,294,0
chrVIII	256385	.	T	G	2072	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.52;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,89:92:99:2105,219,0
chrVIII	256927	.	C	T	1115	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.70;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1148,120,0
chrVIII	256971	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.78;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1002,108,0
chrVIII	257268	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1008,108,0
chrVIII	257295	.	T	C	1140	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=49;Dels=0.02;FS=5.582;HaplotypeScore=3.5333;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.438;QD=23.27;ReadPosRankSum=1.659;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:1173,120,0
chrVIII	257670	.	G	A	1570	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.51;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1603,168,0
chrVIII	257823	.	G	A	1852	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.03;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1885,195,0
chrVIII	258019	.	C	T	1776	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.00;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1809,186,0
chrVIII	258412	.	A	G	1694	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.41;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1727,183,0
chrVIII	258421	.	A	G	1820	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.36;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1853,198,0
chrVIII	258469	.	T	C	1332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=95;Dels=0.00;FS=2.680;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.144;QD=14.02;ReadPosRankSum=2.345;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:2,92:95:99:1365,144,0
chrVIII	258472	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=12.82;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1238,135,0
chrVIII	258556	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.97;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1483,162,0
chrVIII	258587	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.00;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1309,138,0
chrVIII	258754	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7889;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.538;QD=19.67;ReadPosRankSum=1.653;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:1,87:90:99:1803,195,0
chrVIII	259012	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.92;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1202,126,0
chrVIII	259045	.	A	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.24;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1036,111,0
chrVIII	260343	.	T	C	1233	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.71;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1266,138,0
chrVIII	263629	.	G	A	2210	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.56;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2243,231,0
chrVIII	264180	.	G	C	1934	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.5851;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.34;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1967,210,0
chrVIII	266124	.	A	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.61;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1229,132,0
chrVIII	269282	.	T	C	2926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.6586;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.715;QD=23.04;ReadPosRankSum=1.677;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:1,125:127:99:2959,309,0
chrVIII	273164	.	A	C	1604	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8500;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.63;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1637,177,0
chrVIII	273178	.	A	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.61;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1600,165,0
chrVIII	273222	.	G	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.29;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1615,162,0
chrVIII	280747	.	C	T	2125	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.0791;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.14;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2158,228,0
chrVIII	283126	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.07;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1444,150,0
chrVIII	287468	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.67;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1597,171,0
chrVIII	287687	.	G	A	1451	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.44;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1484,156,0
chrVIII	287708	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.36;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1665,177,0
chrVIII	288095	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.10;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1315,135,0
chrVIII	288305	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.661;QD=22.71;ReadPosRankSum=2.365;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1350,144,0
chrVIII	288390	.	T	C	1844	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.49;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1877,198,0
chrVIII	288884	.	T	G	2025	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.55;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2058,213,0
chrVIII	292994	.	T	C	1088	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.53;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1121,120,0
chrVIII	297072	.	A	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.91;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1194,123,0
chrVIII	315828	.	A	C	4243.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=173;Dels=0.00;FS=3.967;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.551;QD=24.53;ReadPosRankSum=1.672;SB=-1.862e+03	GT:AD:DP:GQ:PL	1/1:1,171:173:99:4243,439,0
chrVIII	315879	.	T	C	2808	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,121:126:99:2841,303,0
chrVIII	317296	.	A	G	1519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.400;QD=16.69;ReadPosRankSum=1.694;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1552,162,0
chrVIII	317992	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.50;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1495,156,0
chrVIII	318497	.	G	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.09;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1535,156,0
chrVIII	319558	.	G	A	1484	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.53;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1517,159,0
chrVIII	325925	.	G	A	2447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=117;Dels=0.00;FS=3.832;HaplotypeScore=8.2777;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=0.986;QD=20.91;ReadPosRankSum=0.538;SB=-1.355e+03	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2480,264,0
chrVIII	325975	.	T	C	3529.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=147;Dels=0.00;FS=2.894;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.129;QD=24.01;ReadPosRankSum=2.416;SB=-1.695e+03	GT:AD:DP:GQ:PL	1/1:2,145:147:99:3529,369,0
chrVIII	328055	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.89;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1495,159,0
chrVIII	328228	.	C	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.63;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1312,135,0
chrVIII	328271	.	C	A	1878	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.36;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1911,210,0
chrVIII	329295	.	T	C	1750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.550;QD=23.03;ReadPosRankSum=1.641;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1783,189,0
chrVIII	329634	.	T	C	1501	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.28;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1534,162,0
chrVIII	329687	.	C	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.28;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1276,132,0
chrVIII	330629	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4485;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.68;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1454,156,0
chrVIII	334860	.	A	T	2349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.755;DP=111;Dels=0.00;FS=9.515;HaplotypeScore=6.3460;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=0.736;QD=21.16;ReadPosRankSum=2.900;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:3,108:111:99:2382,246,0
chrVIII	336067	.	C	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.49;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1645,174,0
chrVIII	336408	.	T	C	1299	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.668;QD=24.06;ReadPosRankSum=1.668;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1332,141,0
chrVIII	337147	.	C	A	1642	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.13;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1675,183,0
chrVIII	337281	.	C	T	1625	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.67;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1658,168,0
chrVIII	337323	.	G	A	1957	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.5355;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.82;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1990,201,0
chrVIII	337365	.	T	A	1787	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.5996;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.27;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1820,186,0
chrVIII	337794	.	T	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.3828;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.87;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1586,162,0
chrVIII	337824	.	A	G	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.680;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.627;QD=18.33;ReadPosRankSum=3.658;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:5,68:73:99:1371,147,0
chrVIII	337892	.	T	C	1035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.227;QD=21.56;ReadPosRankSum=1.660;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1068,111,0
chrVIII	339120	.	G	A	3883.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.9457;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.42;SB=-1.936e+03	GT:AD:DP:GQ:PL	1/1:0,158:159:99:3883,406,0
chrVIII	339213	.	A	G	1831	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.41;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1864,204,0
chrVIII	339361	.	C	T	2215	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=12.0975;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.17;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2248,231,0
chrVIII	339601	.	A	C	2117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=99;Dels=0.00;FS=3.635;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=0.732;QD=21.38;ReadPosRankSum=1.696;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:1,96:99:99:2150,231,0
chrVIII	339642	.	C	T	2599	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.52;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2632,279,0
chrVIII	339915	.	C	T	784	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.42;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:84:817,84,0
chrVIII	340031	.	T	A	1077	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.58;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1110,114,0
chrVIII	340175	.	C	T	947	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:99:980,102,0
chrVIII	340247	.	C	T	484	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.47;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:54:517,54,0
chrVIII	340712	.	T	C	965	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.93;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:998,105,0
chrVIII	341253	.	A	G	2175	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=4.864;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.076;QD=22.89;ReadPosRankSum=1.696;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2208,243,0
chrVIII	341299	.	T	C	1459	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.72;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1492,162,0
chrVIII	341482	.	T	C	639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.771;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;MQRankSum=-0.152;QD=11.21;ReadPosRankSum=1.672;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:75:672,75,0
chrVIII	341488	.	G	A	735	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=11.67;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:81:768,81,0
chrVIII	341676	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.8796;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.79;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1613,171,0
chrVIII	341747	.	G	A	1532	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.28;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1565,162,0
chrVIII	341776	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5845;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=17.14;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1387,147,0
chrVIII	341799	.	A	T	876	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=12.17;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:93:909,93,0
chrVIII	341814	.	G	A	757	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=10.81;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:84:790,84,0
chrVIII	341877	.	C	T	713	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.2093;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=14.26;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:81:746,81,0
chrVIII	341892	.	T	C	1086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-1.060;QD=16.21;ReadPosRankSum=1.681;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1119,117,0
chrVIII	342157	.	G	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.0484;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.42;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1654,177,0
chrVIII	342286	.	C	G	2357	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.23;SB=-1.324e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2390,255,0
chrVIII	342521	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.86;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1165,126,0
chrVIII	342575	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.05;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1329,138,0
chrVIII	342609	.	A	G	1563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=2.716;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.524;QD=21.41;ReadPosRankSum=2.382;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1596,168,0
chrVIII	342723	.	G	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.74;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1609,168,0
chrVIII	342729	.	C	T	1501	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.44;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1534,159,0
chrVIII	343035	.	A	C	1658	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.2863;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.51;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1691,183,0
chrVIII	343333	.	T	G	1125	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1158,123,0
chrVIII	343392	.	G	C	825	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.55;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:858,90,0
chrVIII	344070	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.80;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1196,129,0
chrVIII	344834	.	C	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.88;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1195,123,0
chrVIII	344900	.	C	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.3869;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.33;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1194,129,0
chrVIII	344942	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.97;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1285,132,0
chrVIII	345071	.	C	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.50;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1601,168,0
chrVIII	345359	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7286;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-0.495;QD=21.01;ReadPosRankSum=1.683;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1504,143,0
chrVIII	345371	.	C	T	1540	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.74;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1573,168,0
chrVIII	345425	.	T	C	1517	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.06;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1550,162,0
chrVIII	345440	.	G	A	1325	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=15.96;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1358,147,0
chrVIII	345623	.	G	A	852	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=15.78;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:96:885,96,0
chrVIII	346185	.	G	C	1448	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.99;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1481,159,0
chrVIII	346315	.	G	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.43;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1136,123,0
chrVIII	346538	.	C	A	2500	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.81;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2533,258,0
chrVIII	346877	.	T	G	2624	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.22;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2657,282,0
chrVIII	347320	.	A	T	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.949;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.866;QD=21.94;ReadPosRankSum=1.636;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1613,168,0
chrVIII	347353	.	C	T	1763	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.32;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1796,189,0
chrVIII	347674	.	A	G	2018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.315;QD=24.31;ReadPosRankSum=1.690;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2051,216,0
chrVIII	348037	.	G	C	1606	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.33;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1639,177,0
chrVIII	348041	.	A	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.89;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1600,162,0
chrVIII	348142	.	G	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=19.90;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1287,135,0
chrVIII	348154	.	C	A	1003	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=16.72;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1036,114,0
chrVIII	348178	.	T	C	788	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=15.45;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:90:821,90,0
chrVIII	348194	.	G	T	623	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=12.22;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:72:656,72,0
chrVIII	348326	.	A	C	1802	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.52;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1835,189,0
chrVIII	348442	.	T	A	1244	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.85;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1277,138,0
chrVIII	348455	.	C	A	1091	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=19.48;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1124,117,0
chrVIII	348461	.	G	A	1002	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=19.27;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1035,108,0
chrVIII	348462	.	T	C	951	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=-1.275;QD=17.94;ReadPosRankSum=1.667;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:89:984,89,0
chrVIII	348569	.	A	G	984	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=21.87;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1017,108,0
chrVIII	348572	.	G	A	1043	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=20.06;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1076,114,0
chrVIII	348634	.	G	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.55;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1477,153,0
chrVIII	348790	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.920;QD=20.94;ReadPosRankSum=1.678;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1373,150,0
chrVIII	348802	.	A	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=21.17;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1261,135,0
chrVIII	348868	.	C	T	1361	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.31;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1394,144,0
chrVIII	348883	.	T	C	1513	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5984;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.73;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1546,159,0
chrVIII	348973	.	A	C	1469	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.59;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1502,162,0
chrVIII	348982	.	A	G	1547	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.83;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1580,165,0
chrVIII	349120	.	G	A	1123	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1156,120,0
chrVIII	349353	.	G	A	1905	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.17;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1938,198,0
chrVIII	349419	.	T	C	1537	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.29;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1570,165,0
chrVIII	349489	.	G	A	1238	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.11;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1271,135,0
chrVIII	349648	.	T	G	1667	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.23;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1700,183,0
chrVIII	349745	.	C	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.95;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1877,198,0
chrVIII	349748	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.56;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1801,189,0
chrVIII	349882	.	G	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4476;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.55;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1611,165,0
chrVIII	349912	.	A	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.12;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1421,150,0
chrVIII	350566	.	T	C	1105	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.55;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1138,123,0
chrVIII	350971	.	T	C	1498	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.10;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1531,162,0
chrVIII	351086	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.773;QD=21.22;ReadPosRankSum=1.679;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1412,150,0
chrVIII	351568	.	C	T	2119	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9773;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=23.03;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2152,222,0
chrVIII	351601	.	T	C	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=9.126;HaplotypeScore=7.9199;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.833;QD=19.03;ReadPosRankSum=2.401;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:1974,219,0
chrVIII	351610	.	T	C	2000	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.4527;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.69;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2033,216,0
chrVIII	351767	.	C	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.92;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1706,174,0
chrVIII	351784	.	G	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.80;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1368,141,0
chrVIII	351889	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.3137;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.36;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1438,150,0
chrVIII	352207	.	C	T	2416	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=24.16;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2449,258,0
chrVIII	352280	.	A	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=24.00;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1569,168,0
chrVIII	352327	.	A	C	1325	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.54;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1358,144,0
chrVIII	352450	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=7.0514;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.124;QD=19.35;ReadPosRankSum=1.691;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1697,183,0
chrVIII	352507	.	G	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=13.74;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,101:108:99:1517,159,0
chrVIII	352512	.	A	G	1333	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.635;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;MQRankSum=-1.661;QD=13.74;ReadPosRankSum=1.696;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1366,147,0
chrVIII	352521	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=82.7528;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=12.92;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1286,132,0
chrVIII	352529	.	T	C	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.300;DP=92;Dels=0.00;FS=4.684;HaplotypeScore=2.4820;MLEAC=2;MLEAF=1.00;MQ=30.31;MQ0=0;MQRankSum=0.462;QD=0.16;ReadPosRankSum=-3.753;SB=-4.276e+01	GT:AD:DP:GQ:PL	1/1:86,5:92:6:46,6,0
chrVIII	352555	.	C	A	960	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.20;MQ0=0;QD=12.97;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:993,105,0
chrVIII	352685	.	C	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.49;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1674,174,0
chrVIII	353157	.	A	G	2043	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.76;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2076,222,0
chrVIII	353534	.	A	T	2429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=102;Dels=0.00;FS=3.565;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.316;QD=23.81;ReadPosRankSum=1.697;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2462,252,0
chrVIII	353651	.	C	T	2319	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.42;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2352,243,0
chrVIII	353709	.	T	C	2275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=97;Dels=0.00;FS=4.462;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.222;QD=23.45;ReadPosRankSum=1.696;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,94:97:99:2308,240,0
chrVIII	354035	.	T	G	2458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.054;QD=26.72;ReadPosRankSum=1.694;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2491,261,0
chrVIII	354125	.	T	C	1764	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.62;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1797,189,0
chrVIII	354485	.	C	T	3329.01	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.12;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,136:138:99:3329,351,0
chrVIII	354573	.	T	C	1907	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.98;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1940,198,0
chrVIII	354672	.	T	G	1630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.319;QD=21.45;ReadPosRankSum=1.687;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1663,177,0
chrVIII	354747	.	C	T	2604	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.25;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2637,273,0
chrVIII	355238	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=17.98;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1741,177,0
chrVIII	356286	.	C	T	2107	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=8.1946;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.86;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,97:100:99:2140,225,0
chrVIII	357662	.	T	A	732	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=14.35;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:81:765,81,0
chrVIII	357700	.	G	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.88;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1171,126,0
chrVIII	357943	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=24.19;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1436,150,0
chrVIII	358013	.	A	G	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.1108;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.552;QD=21.01;ReadPosRankSum=1.642;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1672,177,0
chrVIII	359491	.	C	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1623;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.24;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1605,168,0
chrVIII	359637	.	A	T	3487.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=141;Dels=0.00;FS=6.178;HaplotypeScore=8.6698;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-0.518;QD=24.73;ReadPosRankSum=2.379;SB=-1.848e+03	GT:AD:DP:GQ:PL	1/1:2,139:141:99:3487,358,0
chrVIII	360543	.	G	A	1892	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.50;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1925,198,0
chrVIII	361205	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.72;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1396,147,0
chrVIII	361212	.	C	T	860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.466;QD=15.36;ReadPosRankSum=0.800;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,51:56:99:893,99,0
chrVIII	361272	.	G	T	764	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=16.26;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:797,84,0
chrVIII	361818	.	C	T	1248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9864;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.553;QD=21.15;ReadPosRankSum=0.000;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1281,135,0
chrVIII	361910	.	A	T	515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.738;DP=47;Dels=0.04;FS=2.163;HaplotypeScore=12.6405;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.416;QD=10.96;ReadPosRankSum=-1.216;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:4,41:45:57:548,57,0
chrVIII	361968	.	T	G	1171	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=54;Dels=0.00;FS=2.642;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.151;QD=21.69;ReadPosRankSum=2.757;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:3,51:54:99:1204,126,0
chrVIII	365358	.	A	G	2704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.909;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.141;QD=21.63;ReadPosRankSum=1.704;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:1,122:125:99:2737,306,0
chrVIII	370997	.	C	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.21;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2006,207,0
chrVIII	372172	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.09;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1513,156,0
chrVIII	372393	.	A	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.53;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1768,183,0
chrVIII	372705	.	C	A	2359	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.83;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2392,246,0
chrVIII	374064	.	G	A	715	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=15.89;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:748,78,0
chrVIII	374065	.	C	T	705	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=15.67;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:738,78,0
chrVIII	374648	.	A	T	2590	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.90;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2623,273,0
chrVIII	374985	.	A	G	2997	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.88;SB=-1.550e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3030,318,0
chrVIII	374992	.	T	A	3120	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.66;SB=-2.157e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3153,324,0
chrVIII	375175	.	G	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1344,138,0
chrVIII	375520	.	A	G	727	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.055;QD=15.47;ReadPosRankSum=1.657;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:90:760,90,0
chrVIII	375742	.	A	G	1005	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.38;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1038,111,0
chrVIII	376014	.	T	C	988	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.3222;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.58;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1021,111,0
chrVIII	377086	.	G	C	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=3.010;HaplotypeScore=3.7386;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=0.787;QD=21.27;ReadPosRankSum=1.575;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:969,102,0
chrVIII	378303	.	C	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1615,168,0
chrVIII	378420	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.485;QD=18.02;ReadPosRankSum=1.608;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1547,165,0
chrVIII	379205	.	C	T	2095	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.77;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2128,219,0
chrVIII	379248	.	T	C	2380	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.80;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2413,255,0
chrVIII	380512	.	T	C	3594.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.540;QD=24.79;ReadPosRankSum=1.708;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:1,143:145:99:3594,379,0
chrVIII	380673	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=1.423;QD=18.09;ReadPosRankSum=-1.361;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1046,111,0
chrVIII	380685	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.50;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1291,138,0
chrVIII	381183	.	G	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=13.85;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1404,147,0
chrVIII	381497	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=16.92;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1251,132,0
chrVIII	381507	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=16.51;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1288,141,0
chrVIII	381514	.	C	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=15.48;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1194,129,0
chrVIII	381521	.	T	A	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.18;MQ0=0;MQRankSum=-0.990;QD=16.65;ReadPosRankSum=1.683;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1215,126,0
chrVIII	381527	.	T	A	1238	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=16.51;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1271,129,0
chrVIII	381677	.	G	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.88;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1171,123,0
chrVIII	381772	.	A	T	896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=5.798;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.182;QD=23.58;ReadPosRankSum=1.550;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:96:929,96,0
chrVIII	381790	.	T	C	767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.809;QD=25.57;ReadPosRankSum=1.617;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:84:800,84,0
chrVIII	384071	.	T	C	1672	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.71;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1705,186,0
chrVIII	384223	.	T	C	2534	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=25.09;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2567,270,0
chrVIII	384483	.	A	G	2175	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=8.2871;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.91;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2208,237,0
chrVIII	384609	.	G	T	25.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=43;Dels=0.00;FS=39.484;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.701;QD=0.58;ReadPosRankSum=-3.848;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,13:43:55:55,0,380
chrVIII	390561	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=71;Dels=0.00;FS=5.898;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.495;QD=18.56;ReadPosRankSum=1.534;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1351,144,0
chrVIII	390900	.	C	T	786	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:87:819,87,0
chrVIII	392524	.	C	T	2535	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;QD=20.61;SB=-1.389e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2568,270,0
chrVIII	392676	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.388;QD=23.76;ReadPosRankSum=1.681;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1649,171,0
chrVIII	393259	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=85;Dels=0.00;FS=3.561;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.701;QD=19.26;ReadPosRankSum=1.650;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1670,165,0
chrVIII	393267	.	C	T	1634	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=19.93;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1667,171,0
chrVIII	393364	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.29;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1415,153,0
chrVIII	393382	.	G	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.89;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1412,153,0
chrVIII	393466	.	A	T	2146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.435;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.2162;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.534;QD=20.25;ReadPosRankSum=-0.742;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2179,228,0
chrVIII	393530	.	A	G	2143	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.81;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,99:103:99:2176,231,0
chrVIII	393725	.	A	G	1709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.434;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-0.564;QD=19.87;ReadPosRankSum=1.611;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1742,189,0
chrVIII	393734	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.832;QD=19.13;ReadPosRankSum=1.687;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1506,162,0
chrVIII	393783	.	G	A	1730	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.65;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,96:98:99:1763,183,0
chrVIII	394221	.	C	T	1535	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1568,165,0
chrVIII	394728	.	A	G	2164	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.54;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2197,231,0
chrVIII	394959	.	G	A	1783	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.46;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1816,186,0
chrVIII	395184	.	A	G	2395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=108;Dels=0.00;FS=7.778;HaplotypeScore=5.9267;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-0.288;QD=22.18;ReadPosRankSum=2.381;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:3,105:108:99:2428,255,0
chrVIII	395417	.	T	C	2096	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.35;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2129,219,0
chrVIII	395596	.	A	C	3704.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;DP=169;Dels=0.00;FS=12.373;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-1.042;QD=21.92;ReadPosRankSum=2.959;SB=-1.672e+03	GT:AD:DP:GQ:PL	1/1:3,166:169:99:3704,399,0
chrVIII	395607	.	G	A	3617.01	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.40;SB=-1.779e+03	GT:AD:DP:GQ:PL	1/1:0,169:169:99:3617,378,0
chrVIII	395667	.	A	G	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=103;Dels=0.00;FS=5.998;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-1.187;QD=17.44;ReadPosRankSum=2.932;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:3,100:103:99:1829,195,0
chrVIII	395713	.	C	T	1494	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=14.0320;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.67;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1527,159,0
chrVIII	396036	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.91;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1432,147,0
chrVIII	396060	.	T	C	1636	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.25;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1669,174,0
chrVIII	396423	.	C	T	2051	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.54;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:2084,219,0
chrVIII	396997	.	A	G	766	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=0.024;QD=15.02;ReadPosRankSum=0.704;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:84:799,84,0
chrVIII	397001	.	A	G	744	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=15.18;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:84:777,84,0
chrVIII	397005	.	G	T	757	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=14.56;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:790,84,0
chrVIII	397656	.	G	A	1530	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.96;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1563,162,0
chrVIII	397999	.	T	C	1785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.544;QD=19.19;ReadPosRankSum=1.694;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:1,91:93:99:1818,195,0
chrVIII	398985	.	G	A	1863	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.19;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1896,195,0
chrVIII	399012	.	C	T	2001	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2034,210,0
chrVIII	399104	.	C	T	2939	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=14.6860;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.55;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2972,312,0
chrVIII	401172	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.52;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1962,204,0
chrVIII	401325	.	A	G	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.760;QD=23.62;ReadPosRankSum=1.690;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1970,207,0
chrVIII	401408	.	C	T	3033	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.51;SB=-1.519e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3066,330,0
chrVIII	401862	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8406;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.81;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1301,132,0
chrVIII	402306	.	C	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1453,150,0
chrVIII	402413	.	T	C	1126	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.08;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1159,123,0
chrVIII	402457	.	G	A	912	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=17.54;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:96:945,96,0
chrVIII	402478	.	T	C	716	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;MQRankSum=-1.299;QD=14.92;ReadPosRankSum=1.660;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:78:749,78,0
chrVIII	402502	.	T	C	643	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;QD=10.37;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:72:676,72,0
chrVIII	402503	.	A	T	657	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=10.43;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:72:690,72,0
chrVIII	402520	.	G	T	763	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=42.26;MQ0=0;QD=10.45;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:81:796,81,0
chrVIII	402653	.	T	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3998;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.60;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1615,174,0
chrVIII	403585	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;DP=53;Dels=0.00;FS=11.822;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.096;QD=22.08;ReadPosRankSum=2.868;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:3,50:53:99:1203,126,0
chrVIII	404390	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.89;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1828,198,0
chrVIII	404429	.	T	C	1603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.117;QD=21.66;ReadPosRankSum=2.317;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1636,171,0
chrVIII	404513	.	G	T	1481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=80;Dels=0.00;FS=3.178;HaplotypeScore=6.7416;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.601;QD=18.51;ReadPosRankSum=1.688;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1514,159,0
chrVIII	404756	.	G	A	2374	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.05;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2407,252,0
chrVIII	405630	.	T	C	1344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.485;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.553;QD=23.17;ReadPosRankSum=1.673;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1377,144,0
chrVIII	405888	.	C	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.46;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1721,177,0
chrVIII	406060	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-1.480e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1903,198,0
chrVIII	406734	.	C	T	2223	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.92;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2256,234,0
chrVIII	409404	.	C	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1155,123,0
chrVIII	410489	.	T	C	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=77;Dels=0.00;FS=7.059;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.114;QD=22.99;ReadPosRankSum=2.385;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1803,198,0
chrVIII	410581	.	A	C	1880	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.42;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1913,198,0
chrVIII	410727	.	C	T	1757	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.17;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1790,186,0
chrVIII	410969	.	T	C	1215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.078;QD=18.13;ReadPosRankSum=1.681;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1248,135,0
chrVIII	410978	.	C	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.06;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1291,135,0
chrVIII	411038	.	C	T	1267	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.36;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1300,141,0
chrVIII	411047	.	C	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.36;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1373,150,0
chrVIII	411085	.	T	C	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.854;QD=19.15;ReadPosRankSum=1.683;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1393,153,0
chrVIII	411130	.	G	A	1642	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1675,174,0
chrVIII	411427	.	C	T	2151	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=24.44;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2184,225,0
chrVIII	412076	.	C	T	2291	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.03;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2324,237,0
chrVIII	412571	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.17;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1701,183,0
chrVIII	412638	.	A	C	1745	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.58;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1778,195,0
chrVIII	412707	.	C	T	2131	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.53;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,96:99:99:2164,222,0
chrVIII	412717	.	T	C	2159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=3.329;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=1.067;QD=21.81;ReadPosRankSum=1.662;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2192,228,0
chrVIII	412880	.	A	C	2176	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.7138;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.18;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2209,234,0
chrVIII	413951	.	A	G	1320	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.70;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1353,144,0
chrVIII	414262	.	C	T	2186	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0958;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=24.02;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2219,228,0
chrVIII	414572	.	G	A	2438	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.67;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2471,255,0
chrVIII	414999	.	G	A	1628	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.8081;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.61;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1661,177,0
chrVIII	415234	.	G	T	955	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.73;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:988,102,0
chrVIII	415310	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.71;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1317,141,0
chrVIII	415374	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.23;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1478,153,0
chrVIII	415815	.	A	G	1092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.513;QD=19.85;ReadPosRankSum=1.668;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1125,117,0
chrVIII	415986	.	G	C	1523	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.56;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1556,162,0
chrVIII	416592	.	T	C	2568	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.05;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2601,282,0
chrVIII	416601	.	G	C	2511	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.28;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2544,273,0
chrVIII	416784	.	T	C	1234	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.90;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1267,138,0
chrVIII	416796	.	A	G	1131	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.17;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1164,129,0
chrVIII	417054	.	G	A	1367	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.98;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1400,156,0
chrVIII	417114	.	A	G	794	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.564;QD=19.37;ReadPosRankSum=1.648;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:87:827,87,0
chrVIII	417310	.	G	A	2063	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0450;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2096,228,0
chrVIII	417518	.	G	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=25.12;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1917,195,0
chrVIII	417602	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.86;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1716,186,0
chrVIII	418197	.	C	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.43;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1177,123,0
chrVIII	418253	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.37;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1174,129,0
chrVIII	418718	.	A	G	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.703;QD=19.28;ReadPosRankSum=2.830;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:99:1286,135,0
chrVIII	418913	.	C	T	1582	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4760;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.28;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1615,174,0
chrVIII	419187	.	T	G	1775	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.05;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1808,192,0
chrVIII	419449	.	G	A	1350	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.29;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1383,144,0
chrVIII	419566	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.02;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:56:99:1154,120,0
chrVIII	419617	.	G	A	1410	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.74;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1443,153,0
chrVIII	419882	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.75;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1229,129,0
chrVIII	420220	.	A	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.1435;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=22.28;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1392,153,0
chrVIII	420248	.	A	T	2308	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=25.93;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2341,243,0
chrVIII	420455	.	T	G	2072	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3992;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.52;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2105,231,0
chrVIII	420530	.	G	A	1410	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=22.03;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1443,147,0
chrVIII	420572	.	T	G	60.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;DP=72;Dels=0.00;FS=11.462;HaplotypeScore=2.6141;MLEAC=1;MLEAF=0.500;MQ=46.93;MQ0=0;MQRankSum=-0.908;QD=0.83;ReadPosRankSum=0.421;SB=-5.690e+02	GT:AD:DP:GQ:PL	0/1:5,67:72:90:90,0,96
chrVIII	420781	.	A	G	2266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=114;Dels=0.00;FS=5.368;HaplotypeScore=10.3800;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.649;QD=19.88;ReadPosRankSum=2.937;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:3,110:114:99:2299,249,0
chrVIII	420823	.	A	G	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.163;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.313;QD=18.38;ReadPosRankSum=2.763;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:3,78:82:99:1540,145,0
chrVIII	420865	.	G	T	1572	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.68;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1605,165,0
chrVIII	420997	.	C	T	699	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=15.89;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:75:732,75,0
chrVIII	421000	.	T	C	627	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=14.25;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:72:660,72,0
chrVIII	421276	.	G	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.76;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1590,165,0
chrVIII	421312	.	A	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.56;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1091,120,0
chrVIII	421321	.	C	T	1037	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.19;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1070,114,0
chrVIII	421330	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=18.13;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:976,105,0
chrVIII	421368	.	C	G	1283	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=21.75;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1316,141,0
chrVIII	421474	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.84;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1501,153,0
chrVIII	421507	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.52;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1274,135,0
chrVIII	421663	.	C	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.83;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1595,168,0
chrVIII	421693	.	A	G	1798	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.66;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1831,195,0
chrVIII	421756	.	A	G	2179	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.68;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2212,234,0
chrVIII	422239	.	T	C	1022	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.93;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1055,117,0
chrVIII	422434	.	A	G	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=60;Dels=0.00;FS=8.696;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.565;QD=21.37;ReadPosRankSum=2.367;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:2,57:60:99:1315,138,0
chrVIII	422538	.	G	A	599	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.11;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:72:632,72,0
chrVIII	422992	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=19.19;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1357,150,0
chrVIII	423037	.	C	G	1217	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=50.2833;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;QD=17.90;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1250,132,0
chrVIII	423389	.	T	C	595	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=16.53;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:66:628,66,0
chrVIII	423426	.	G	A	871	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.42;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:96:904,96,0
chrVIII	423870	.	T	C	1956	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.74;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1989,219,0
chrVIII	424109	.	G	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.7343;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=21.41;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1703,177,0
chrVIII	424123	.	G	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4653;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=19.44;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1569,162,0
chrVIII	424149	.	T	C	1087	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=16.47;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:1,63:66:99:1120,120,0
chrVIII	424239	.	C	T	1656	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.00;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1689,177,0
chrVIII	424278	.	T	C	1973	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.45;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2006,207,0
chrVIII	424326	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=15.87;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1239,135,0
chrVIII	425219	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=17.17;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1218,126,0
chrVIII	425300	.	G	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=16.67;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:1950,204,0
chrVIII	425301	.	C	T	1925	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=16.45;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:0,114:117:99:1958,207,0
chrVIII	425420	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=13.633;HaplotypeScore=2.2772;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.095;QD=22.19;ReadPosRankSum=2.906;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1697,180,0
chrVIII	425426	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.64;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1591,168,0
chrVIII	426018	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.0735;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.92;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1225,132,0
chrVIII	426069	.	T	A	1548	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.50;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1581,162,0
chrVIII	426306	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.18;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1741,180,0
chrVIII	426308	.	G	C	1725	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.84;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1758,189,0
chrVIII	426350	.	G	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=16.79;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1309,141,0
chrVIII	428194	.	T	C	1971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.6291;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.289;QD=22.66;ReadPosRankSum=1.692;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:2004,210,0
chrVIII	428738	.	G	A	2177	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.46;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2210,231,0
chrVIII	430781	.	T	C	2605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=3.036;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.783;QD=22.08;ReadPosRankSum=2.387;SB=-1.560e+03	GT:AD:DP:GQ:PL	1/1:2,116:118:99:2638,276,0
chrVIII	434699	.	A	G	794	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=16.89;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:90:827,90,0
chrVIII	435482	.	A	G	2123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=96;Dels=0.00;FS=6.154;HaplotypeScore=4.1486;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.147;QD=22.11;ReadPosRankSum=2.927;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:3,93:96:99:2156,228,0
chrVIII	435713	.	C	T	1918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=3.222;HaplotypeScore=4.3716;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.608;QD=22.56;ReadPosRankSum=1.114;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1951,201,0
chrVIII	435764	.	G	A	1672	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.305;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.685;QD=22.90;ReadPosRankSum=0.261;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1705,174,0
chrVIII	436001	.	C	T	2309	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.80;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2342,243,0
chrVIII	436061	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.43;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1446,159,0
chrVIII	436433	.	A	G	1148	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.96;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1181,132,0
chrVIII	436457	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.32;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1216,126,0
chrVIII	436613	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.705;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.039;QD=21.15;ReadPosRankSum=1.679;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1408,150,0
chrVIII	436654	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.688;QD=19.41;ReadPosRankSum=1.688;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1547,168,0
chrVIII	436695	.	G	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.05;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1466,153,0
chrVIII	436810	.	T	C	501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=6.651;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.328;QD=13.54;ReadPosRankSum=1.639;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:57:534,57,0
chrVIII	436829	.	T	C	527	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=4.4444;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=15.06;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:63:560,63,0
chrVIII	436939	.	G	T	508	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.14;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:57:541,57,0
chrVIII	437014	.	G	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.75;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1159,120,0
chrVIII	437680	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.11;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1720,180,0
chrVIII	437704	.	G	A	1267	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.04;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1300,135,0
chrVIII	437974	.	A	G	1342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.299;QD=18.38;ReadPosRankSum=1.684;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1375,141,0
chrVIII	438040	.	A	G	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.131;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.299;QD=19.69;ReadPosRankSum=2.371;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1254,132,0
chrVIII	438265	.	A	G	1619	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.13;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1652,186,0
chrVIII	438307	.	G	A	1777	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.08;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1810,192,0
chrVIII	439062	.	C	T	1702	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.56;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1735,177,0
chrVIII	439232	.	A	G	1141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.571;QD=19.34;ReadPosRankSum=2.367;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1174,123,0
chrVIII	440234	.	A	G	2611	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.7187;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=25.60;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2644,276,0
chrVIII	440297	.	C	T	2716	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.47;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2749,285,0
chrVIII	440682	.	C	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=12.1236;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.81;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1519,159,0
chrVIII	441789	.	A	T	2132	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1214;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.08;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2165,225,0
chrVIII	441833	.	A	G	1694	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.29;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1727,183,0
chrVIII	442149	.	T	C	1237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=51.2535;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.245;QD=19.33;ReadPosRankSum=1.570;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1270,135,0
chrVIII	443494	.	T	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8230;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.91;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1980,210,0
chrVIII	444367	.	A	G	965	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.44;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:998,105,0
chrVIII	445169	.	T	C	2052	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=25.02;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2085,222,0
chrVIII	447896	.	G	T	2015	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.39;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2048,210,0
chrVIII	448924	.	T	G	3059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=132;Dels=0.00;FS=7.119;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.098;QD=23.17;ReadPosRankSum=2.337;SB=-1.587e+03	GT:AD:DP:GQ:PL	1/1:2,129:132:99:3092,330,0
chrVIII	448997	.	G	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.07;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1953,201,0
chrVIII	449277	.	A	G	2298	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.21;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2331,252,0
chrVIII	449402	.	T	G	1498	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.16;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1531,168,0
chrVIII	449897	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.50;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1242,129,0
chrVIII	449939	.	A	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.67;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1284,135,0
chrVIII	449957	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.490;HaplotypeScore=3.5176;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.525;QD=16.96;ReadPosRankSum=1.525;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1169,123,0
chrVIII	450131	.	G	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.34;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1463,156,0
chrVIII	450218	.	A	C	1526	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.12;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1559,165,0
chrVIII	450239	.	G	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.66;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1488,156,0
chrVIII	450254	.	T	C	1484	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.53;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1517,162,0
chrVIII	450359	.	G	A	2718	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.65;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2751,282,0
chrVIII	450572	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.12;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1235,129,0
chrVIII	450770	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.02;FS=4.500;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.782;QD=21.57;ReadPosRankSum=1.676;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1392,150,0
chrVIII	451172	.	G	A	2178	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1952;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=1;QD=17.56;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2211,237,0
chrVIII	451458	.	C	T	2497	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6178;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.66;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2530,261,0
chrVIII	452436	.	T	C	2420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=1;MQRankSum=-0.344;QD=21.61;ReadPosRankSum=2.405;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:3,109:112:99:2453,264,0
chrVIII	452866	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.75;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1693,183,0
chrVIII	452903	.	C	T	2477	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.6571;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.99;SB=-1.497e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2510,258,0
chrVIII	452923	.	C	A	2744	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.27;SB=-1.525e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2777,285,0
chrVIII	452955	.	A	G	3342.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=10.0802;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.54;SB=-1.467e+03	GT:AD:DP:GQ:PL	1/1:0,168:171:99:3342,357,0
chrVIII	453105	.	T	C	1998	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.45;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2031,216,0
chrVIII	453147	.	T	A	1888	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.21;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1921,204,0
chrVIII	453234	.	T	G	2605	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.0375;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.26;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2638,294,0
chrVIII	453261	.	A	G	2533	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.5190;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.62;SB=-1.374e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2566,270,0
chrVIII	453457	.	T	A	1016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=-0.550;QD=11.81;ReadPosRankSum=1.691;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1049,111,0
chrVIII	453472	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6939;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=14.47;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1234,132,0
chrVIII	453526	.	A	C	1752	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=16.53;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:1785,189,0
chrVIII	453608	.	A	T	2075	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.15;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2108,216,0
chrVIII	453668	.	C	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.02;FS=0.000;HaplotypeScore=27.9753;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.43;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1637,168,0
chrVIII	453696	.	C	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.02;FS=0.000;HaplotypeScore=26.1123;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=16.86;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1500,159,0
chrVIII	453724	.	A	G	1665	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5929;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=21.62;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1698,177,0
chrVIII	453738	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=4.175;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.459;QD=21.04;ReadPosRankSum=1.630;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1485,156,0
chrVIII	453771	.	A	G	1325	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.49;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1358,147,0
chrVIII	453814	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.666;QD=21.29;ReadPosRankSum=1.688;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1694,157,0
chrVIII	453871	.	A	T	1428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.706;DP=84;Dels=0.00;FS=18.355;HaplotypeScore=2.9359;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.081;QD=17.00;ReadPosRankSum=4.127;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:7,77:84:99:1461,159,0
chrVIII	453874	.	T	C	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=-1.590;QD=18.05;ReadPosRankSum=1.685;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,72:76:99:1405,150,0
chrVIII	453886	.	T	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=17.63;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1408,150,0
chrVIII	453975	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.010;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.633;QD=22.21;ReadPosRankSum=1.584;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1588,168,0
chrVIII	454160	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=76;Dels=0.00;FS=9.208;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-0.720;QD=18.12;ReadPosRankSum=2.828;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1410,147,0
chrVIII	454162	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.12;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1483,156,0
chrVIII	454385	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=59;Dels=0.00;FS=6.247;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=-0.356;QD=21.49;ReadPosRankSum=1.906;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1301,138,0
chrVIII	454572	.	G	A	1384	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.69;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1417,147,0
chrVIII	454645	.	T	A	914	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.29;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:947,99,0
chrVIII	454715	.	G	A	668	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.55;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:72:701,72,0
chrVIII	454748	.	G	A	821	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=21.61;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:854,90,0
chrVIII	454768	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.55;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1069,120,0
chrVIII	454807	.	G	A	1380	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.90;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1413,144,0
chrVIII	454825	.	C	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=24.62;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1264,129,0
chrVIII	454986	.	G	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.43;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1558,162,0
chrVIII	455012	.	A	G	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=10.092;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.627;QD=22.87;ReadPosRankSum=2.375;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1565,165,0
chrVIII	455209	.	G	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.50;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1114,114,0
chrVIII	455215	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.26;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1057,111,0
chrVIII	455293	.	G	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.40;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1741,177,0
chrVIII	455477	.	G	A	1247	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.98;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1280,138,0
chrVIII	455675	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.16;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1472,156,0
chrVIII	455744	.	C	T	1197	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.02;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1230,126,0
chrVIII	455862	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.255;DP=61;Dels=0.00;FS=5.876;HaplotypeScore=18.7360;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.644;QD=18.23;ReadPosRankSum=0.204;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:3,57:61:97:1145,97,0
chrVIII	456019	.	G	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=42.1707;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.43;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1218,126,0
chrVIII	456052	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=20.91;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1727,183,0
chrVIII	456239	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.93;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1853,186,0
chrVIII	456303	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.86;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1410,153,0
chrVIII	456328	.	G	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.67;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1461,153,0
chrVIII	456435	.	C	T	2109	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.68;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2142,219,0
chrVIII	456499	.	C	T	3672.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.0677;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=24.48;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:0,149:150:99:3672,390,0
chrVIII	456866	.	C	G	1550	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=19.87;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1583,168,0
chrVIII	456888	.	C	T	1341	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=18.62;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1374,138,0
chrVIII	456889	.	C	T	1305	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=18.12;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1338,138,0
chrVIII	456899	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=74;Dels=0.00;FS=14.103;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;MQRankSum=-1.117;QD=16.54;ReadPosRankSum=2.383;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1257,138,0
chrVIII	456941	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.02;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1334,141,0
chrVIII	457019	.	G	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.22;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1233,129,0
chrVIII	457249	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=20.75;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1216,126,0
chrVIII	457253	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.49;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1135,120,0
chrVIII	457364	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.86;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1089,117,0
chrVIII	457544	.	T	C	1130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=3.582;HaplotypeScore=6.1802;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-1.685;QD=15.27;ReadPosRankSum=1.637;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1163,123,0
chrVIII	457546	.	A	G	1151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;DP=74;Dels=0.00;FS=10.569;HaplotypeScore=6.1802;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;MQRankSum=-1.292;QD=15.55;ReadPosRankSum=2.876;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1184,126,0
chrVIII	457565	.	G	A	985	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=13.68;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,68:72:99:1018,108,0
chrVIII	457580	.	C	T	1076	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=13.97;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1109,117,0
chrVIII	457673	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.69;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1549,165,0
chrVIII	457736	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.720;QD=19.51;ReadPosRankSum=1.679;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1301,141,0
chrVIII	458084	.	T	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.18;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1364,141,0
chrVIII	458130	.	T	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=8.2146;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.33;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1910,204,0
chrVIII	458277	.	T	C	1186	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.96;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1219,132,0
chrVIII	458295	.	G	A	1041	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.15;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1074,111,0
chrVIII	458341	.	C	G	978	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.73;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:99:1011,111,0
chrVIII	458489	.	G	T	1883	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=23.25;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1916,204,0
chrVIII	458616	.	T	C	1575	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.87;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1608,171,0
chrVIII	458670	.	C	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.38;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1997,207,0
chrVIII	458773	.	C	G	824	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=14.21;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:93:857,93,0
chrVIII	458785	.	T	C	930	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=59;Dels=0.00;FS=12.058;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.086;QD=15.76;ReadPosRankSum=2.881;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:3,56:59:99:963,105,0
chrVIII	458896	.	T	C	1528	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=6.1101;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.84;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1561,165,0
chrVIII	458916	.	G	A	1735	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.49;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1768,186,0
chrVIII	458966	.	G	A	2098	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=21.63;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2131,216,0
chrVIII	458970	.	G	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.10;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:1924,204,0
chrVIII	459010	.	C	T	2530	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.19;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,110:114:99:2563,264,0
chrVIII	459529	.	G	A	1882	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.0708;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.82;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1915,195,0
chrVIII	459589	.	G	A	2000	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.10;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2033,213,0
chrVIII	459787	.	C	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.15;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1683,177,0
chrVIII	459905	.	C	G	1200	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.35;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1233,129,0
chrVIII	460285	.	T	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.42;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1433,153,0
chrVIII	460606	.	T	C	1910	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.01;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1943,210,0
chrVIII	463432	.	A	G	1086	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.39;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1119,117,0
chrVIII	463786	.	G	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=26.00;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1567,162,0
chrVIII	464525	.	G	A	2116	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.6006;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.59;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2149,225,0
chrVIII	464855	.	G	A	1034	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.83;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1067,114,0
chrVIII	465579	.	T	C	290	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=13.18;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:36:323,36,0
chrVIII	465638	.	T	C	294	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=11.31;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:36:327,36,0
chrVIII	465684	.	G	A	452	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.07;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:51:485,51,0
chrVIII	465708	.	T	A	547	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.23;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:60:580,60,0
chrVIII	465742	.	C	T	796	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.51;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:93:829,93,0
chrVIII	465769	.	C	T	490	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.4553;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=16.90;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:1,28:29:60:523,60,0
chrVIII	465841	.	T	C	938	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.2218;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.564;QD=22.88;ReadPosRankSum=0.465;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,40:41:99:971,108,0
chrVIII	465996	.	C	T	2332	filter	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=23.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2365,255,0
chrVIII	466004	.	C	A	2401	filter	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=23.31;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2434,264,0
chrVIII	466032	.	T	C	1436	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.48;MQ0=0;QD=19.41;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1469,171,0
chrVIII	466045	.	C	T	1021	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=18.56;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1054,123,0
chrVIII	466048	.	C	T	972	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=18.69;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1005,117,0
chrVIII	466143	.	A	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.74;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1567,165,0
chrVIII	466240	.	T	G	3166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=153;Dels=0.00;FS=5.315;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=1.211;QD=20.69;ReadPosRankSum=1.709;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:1,152:153:99:3199,336,0
chrVIII	466269	.	T	A	3270.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=173;Dels=0.00;FS=9.850;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;MQRankSum=-1.456;QD=18.90;ReadPosRankSum=2.407;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:2,171:173:99:3270,342,0
chrVIII	466305	.	A	T	2059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.660;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=16.3901;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=-1.789;QD=12.95;ReadPosRankSum=1.968;SB=-1.501e+03	GT:AD:DP:GQ:PL	1/1:3,156:159:99:2092,231,0
chrVIII	466324	.	A	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=13.59;SB=-1.609e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:1854,216,0
chrVIII	466334	.	A	G	1437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=0;MQRankSum=-1.548;QD=12.72;ReadPosRankSum=1.671;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:1470,168,0
chrVIII	466339	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=30.99;MQ0=0;QD=11.80;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1307,150,0
chrVIII	466361	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=3.009;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.03;MQ0=0;MQRankSum=-2.073;QD=13.74;ReadPosRankSum=2.400;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:2,96:98:99:1380,165,0
chrVIII	466379	.	G	C	1117	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=14.70;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1150,138,0
chrVIII	466381	.	A	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=14.49;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1134,135,0
chrVIII	466403	.	T	C	1228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.862;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;MQRankSum=-1.115;QD=16.82;ReadPosRankSum=1.685;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1261,147,0
chrVIII	466472	.	T	G	1002	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=52.4821;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=15.42;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1035,108,0
chrVIII	466475	.	A	G	973	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=53.5675;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=14.97;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1006,108,0
chrVIII	466485	.	A	C	976	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=58.3565;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=13.75;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1009,114,0
chrVIII	466650	.	C	A	1823	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=19.19;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1856,201,0
chrVIII	466657	.	G	A	1622	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=17.44;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1655,180,0
chrVIII	466663	.	G	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=15.41;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1420,162,0
chrVIII	466717	.	C	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=32.17;MQ0=2;QD=13.40;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1360,159,0
chrVIII	466727	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=2;QD=13.11;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,112:115:99:1541,165,0
chrVIII	466785	.	C	T	2727	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=2;QD=19.48;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,139:140:99:2760,294,0
chrVIII	466818	.	G	A	3284.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;MQRankSum=1.230;QD=22.49;ReadPosRankSum=1.660;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,145:146:99:3284,348,0
chrVIII	466868	.	C	T	3284.01	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=20.92;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,156:157:99:3284,345,0
chrVIII	466878	.	C	T	3203	PASS	AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=7.4820;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.30;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,165:166:99:3236,345,0
chrVIII	466929	.	G	A	2276	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=16.49;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2309,249,0
chrVIII	466959	.	T	C	1995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=71.4676;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=0.577;QD=17.50;ReadPosRankSum=1.611;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2028,222,0
chrVIII	466968	.	A	G	1789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=101;Dels=0.00;FS=7.274;HaplotypeScore=70.8241;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;MQRankSum=0.938;QD=17.71;ReadPosRankSum=2.230;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:2,99:101:99:1822,189,0
chrVIII	467353	.	G	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=23.31;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1175,117,0
chrVIII	468037	.	T	C	3561.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=147;Dels=0.00;FS=3.255;HaplotypeScore=11.3128;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.522;QD=24.22;ReadPosRankSum=1.708;SB=-1.906e+03	GT:AD:DP:GQ:PL	1/1:1,145:147:99:3561,378,0
chrVIII	468936	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1316,138,0
chrVIII	469661	.	A	G	679	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:75:712,75,0
chrVIII	472755	.	T	C	916	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.11;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:949,102,0
chrVIII	473884	.	A	G	2394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.518;QD=24.68;ReadPosRankSum=1.696;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2427,258,0
chrVIII	474210	.	T	C	856	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.40;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:889,93,0
chrVIII	480361	.	A	G	1816	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1849,198,0
chrVIII	482776	.	A	G	2281	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.7905;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.28;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2314,246,0
chrVIII	482896	.	C	G	1820	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.16;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1853,195,0
chrVIII	483007	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.148;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.054;QD=20.92;ReadPosRankSum=1.678;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1372,144,0
chrVIII	483130	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.32;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1280,135,0
chrVIII	483190	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.69;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1229,126,0
chrVIII	483220	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=17.91;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1358,150,0
chrVIII	483295	.	A	G	1282	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1315,138,0
chrVIII	483396	.	A	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.95;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1128,117,0
chrVIII	483796	.	T	C	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.854;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.713;QD=20.22;ReadPosRankSum=1.681;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1428,150,0
chrVIII	483978	.	A	G	2215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.253;QD=23.56;ReadPosRankSum=1.695;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2248,240,0
chrVIII	485700	.	G	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4796;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1940,201,0
chrVIII	487128	.	C	T	2592	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.3253;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.336;QD=19.64;ReadPosRankSum=-1.034;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,129:132:99:2625,255,0
chrVIII	487135	.	T	C	2423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=120;Dels=0.00;FS=10.719;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.486;QD=20.19;ReadPosRankSum=2.367;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:2,117:120:99:2456,264,0
chrVIII	487308	.	A	G	2451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.045;QD=20.77;ReadPosRankSum=1.702;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,115:118:99:2484,258,0
chrVIII	491020	.	A	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.11;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1327,147,0
chrVIII	491330	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1675,177,0
chrVIII	493485	.	C	T	1936	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.51;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1969,204,0
chrVIII	493985	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1155,120,0
chrVIII	494251	.	C	T	2581	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.25;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2614,270,0
chrVIII	494980	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.97;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1571,174,0
chrVIII	496069	.	G	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.18;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1608,168,0
chrVIII	497200	.	G	C	1198	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=10.6115;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.62;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1231,132,0
chrVIII	497870	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.6956;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.089;QD=19.22;ReadPosRankSum=0.133;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1571,165,0
chrVIII	498208	.	G	A	913	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=15.74;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:946,99,0
chrVIII	500211	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5054;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.33;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1811,192,0
chrVIII	500294	.	G	A	3552.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.79;SB=-1.603e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3552,375,0
chrVIII	500907	.	T	C	2096	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2129,222,0
chrVIII	500941	.	C	T	2248	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.94;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2281,234,0
chrVIII	501189	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.506;QD=19.32;ReadPosRankSum=1.572;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1289,135,0
chrVIII	501390	.	A	G	2072	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.713;QD=23.82;ReadPosRankSum=1.691;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:1,84:87:99:2105,222,0
chrVIII	501500	.	T	A	2015	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.51;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2048,207,0
chrVIII	501912	.	A	G	2930	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=122;Dels=0.00;FS=4.881;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.155;QD=24.02;ReadPosRankSum=1.588;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:1,119:122:99:2963,306,0
chrVIII	505427	.	T	G	1471	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1030;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.29;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1504,159,0
chrVIII	505605	.	C	G	5106.01	PASS	AC=2;AF=1.00;AN=2;DP=218;Dels=0.00;FS=0.000;HaplotypeScore=11.6299;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.42;SB=-2.132e+03	GT:AD:DP:GQ:PL	1/1:0,217:218:99:5106,535,0
chrVIII	506142	.	A	G	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.968;QD=20.52;ReadPosRankSum=1.681;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1449,153,0
chrVIII	506159	.	T	C	1232	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.25;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1265,132,0
chrVIII	506267	.	T	C	2161	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.397;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;MQRankSum=-1.400;QD=22.75;ReadPosRankSum=1.658;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:1,93:95:99:2194,231,0
chrVIII	506279	.	T	A	2054	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.18;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2087,216,0
chrVIII	506861	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1145,120,0
chrVIII	506933	.	A	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.75;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1098,117,0
chrVIII	507015	.	C	T	1464	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.01;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1497,153,0
chrVIII	510388	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.79;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1574,168,0
chrVIII	510784	.	C	T	1084	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.68;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1117,120,0
chrVIII	511078	.	C	T	1199	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.80;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1232,126,0
chrVIII	511546	.	C	A	761	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=16.54;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:81:794,81,0
chrVIII	513025	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=5.185;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.525;QD=21.16;ReadPosRankSum=1.680;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1451,159,0
chrVIII	513034	.	T	C	1523	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.78;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1556,168,0
chrVIII	513937	.	T	C	1955	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.75;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1988,216,0
chrVIII	514601	.	A	T	949	filter	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=12.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:982,108,0
chrVIII	514870	.	A	G	399	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:45:432,45,0
chrVIII	515149	.	T	A	1078	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=25.07;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1111,117,0
chrVIII	515573	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.49;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1495,159,0
chrVIII	515723	.	T	C	1566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.635;QD=26.10;ReadPosRankSum=1.675;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1599,168,0
chrVIII	516779	.	G	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=24.56;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1531,156,0
chrVIII	516811	.	G	A	1616	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.44;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1649,174,0
chrVIII	517278	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=4.363;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.268;QD=18.80;ReadPosRankSum=1.683;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1368,147,0
chrVIII	517336	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.48;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1139,117,0
chrVIII	518179	.	C	T	1073	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1106,114,0
chrVIII	518458	.	G	A	1630	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1663,174,0
chrVIII	518911	.	T	C	1071	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.91;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1104,117,0
chrVIII	518945	.	A	G	951	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.64;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:984,105,0
chrVIII	519006	.	G	A	766	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.2109;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=14.73;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:799,84,0
chrVIII	519013	.	G	A	731	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6954;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=13.05;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:81:764,81,0
chrVIII	519077	.	T	A	497	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;MQRankSum=-1.027;QD=9.20;ReadPosRankSum=1.668;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:57:530,57,0
chrVIII	519078	.	G	A	511	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=41.38;MQ0=0;QD=8.96;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,54:57:57:544,57,0
chrVIII	519079	.	G	A	525	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=9.05;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:57:558,57,0
chrVIII	519269	.	T	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.24;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1567,162,0
chrVIII	519377	.	T	A	1220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=61;Dels=0.00;FS=3.072;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;MQRankSum=0.182;QD=20.00;ReadPosRankSum=2.369;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1253,135,0
chrVIII	519381	.	C	G	1205	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=19.75;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1238,135,0
chrVIII	519391	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=47.74;MQ0=0;QD=20.75;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1299,135,0
chrVIII	520123	.	C	G	1291	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.82;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1324,138,0
chrVIII	521047	.	G	A	1975	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.15;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2008,207,0
chrVIII	521191	.	T	C	1745	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.29;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:1,81:86:99:1778,189,0
chrVIII	522950	.	C	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.21;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1330,141,0
chrVIII	523239	.	C	T	1924	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0538;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.04;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1957,207,0
chrVIII	523454	.	G	A	1431	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.36;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1464,150,0
chrVIII	523631	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.77;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1887,195,0
chrVIII	523679	.	C	T	2459	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.56;SB=-1.421e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2492,255,0
chrVIII	523907	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.29;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1547,162,0
chrVIII	524061	.	T	C	2094	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.35;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2127,225,0
chrVIII	525838	.	G	A	165.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.450;DP=85;Dels=0.00;FS=8.391;HaplotypeScore=10.2529;MLEAC=1;MLEAF=0.500;MQ=52.60;MQ0=0;MQRankSum=-5.840;QD=1.94;ReadPosRankSum=-1.627;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:68,16:85:99:195,0,1167
chrVIII	525877	.	T	C	503.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;DP=97;Dels=0.00;FS=16.437;HaplotypeScore=11.6490;MLEAC=1;MLEAF=0.500;MQ=49.21;MQ0=0;MQRankSum=-7.738;QD=5.19;ReadPosRankSum=3.552;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:68,29:97:99:533,0,1226
chrVIII	525907	.	G	A	397.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.595;DP=94;Dels=0.00;FS=26.365;HaplotypeScore=5.7650;MLEAC=1;MLEAF=0.500;MQ=49.26;MQ0=1;MQRankSum=-6.783;QD=4.22;ReadPosRankSum=0.452;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,24:94:99:427,0,1141
chrVIII	526552	.	G	C	624	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.53;MQ0=8;QD=11.35;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:75:657,75,0
chrVIII	527776	.	T	C	204.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DP=84;Dels=0.00;FS=5.037;HaplotypeScore=8.0735;MLEAC=1;MLEAF=0.500;MQ=47.09;MQ0=0;MQRankSum=-5.407;QD=2.43;ReadPosRankSum=0.510;SB=-3.501e+01	GT:AD:DP:GQ:PL	0/1:61,21:84:99:234,0,1120
chrVIII	527797	.	T	G	157.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;DP=98;Dels=0.00;FS=0.975;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=47.33;MQ0=1;MQRankSum=-4.623;QD=1.60;ReadPosRankSum=3.429;SB=-3.001e+01	GT:AD:DP:GQ:PL	0/1:78,20:98:99:187,0,1406
chrVIII	528045	.	G	A	480.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;DP=137;Dels=0.00;FS=5.002;HaplotypeScore=11.5852;MLEAC=1;MLEAF=0.500;MQ=45.62;MQ0=10;MQRankSum=-4.551;QD=3.50;ReadPosRankSum=-2.437;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:85,51:137:99:510,0,1581
chrVIII	528155	.	A	G	300.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=1.096;HaplotypeScore=8.1276;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=18;MQRankSum=-0.168;QD=4.11;ReadPosRankSum=2.416;SB=-2.733e+02	GT:AD:DP:GQ:PL	1/1:19,53:73:15:333,15,0
chrVIII	528226	.	A	G	883	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=18;MQRankSum=-1.794;QD=10.77;ReadPosRankSum=2.373;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:916,99,0
chrVIII	528435	.	T	A	1959	filter	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=10;QD=14.95;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:1992,213,0
chrVIII	529465	.	G	T	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.07;MQ0=6;QD=1.17;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,17:17:6:51,6,0
chrVIII	529534	.	T	A	103.13	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.72;MQ0=7;QD=2.71;SB=-7.359e-02	GT:AD:DP:GQ:PL	1/1:0,38:38:18:136,18,0
chrVIII	529535	.	T	C	103.13	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.72;MQ0=7;QD=2.71;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:0,38:38:18:136,18,0
chrVIII	529566	.	G	A	102.13	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.81;MQ0=3;QD=2.22;SB=-1.131e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:18:135,18,0
chrVIII	529576	.	G	T	120.13	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=3;QD=2.61;SB=-1.171e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:18:153,18,0
chrVIII	529669	.	C	T	42.97	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.01;MQ0=0;QD=2.53;SB=-9.813e-01	GT:AD:DP:GQ:PL	1/1:0,17:17:9:75,9,0
chrVIII	529671	.	T	C	65.51	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.01;MQ0=0;QD=3.85;SB=-5.224e-01	GT:AD:DP:GQ:PL	1/1:0,16:17:12:98,12,0
chrVIII	540650	.	C	G	154.06	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.04;MQ0=25;QD=4.16;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:21:187,21,0
chrVIII	541131	.	G	A	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.81;MQ0=15;QD=0.91;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:6:53,6,0
chrVIII	550385	.	A	G	56.97	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.69;MQ0=20;QD=2.28;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:9:89,9,0
chrVIII	550651	.	T	A	57.97	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.03;MQ0=51;QD=1.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:9:90,9,0
chrVIII	550671	.	G	A	56.97	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.23;MQ0=48;QD=1.10;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:52:9:89,9,0
chrVIII	551055	.	C	T	81.51	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.28;MQ0=31;QD=2.15;SB=-4.542e-01	GT:AD:DP:GQ:PL	1/1:0,38:38:12:114,12,0
chrVIII	551067	.	T	C	52.97	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.46;MQ0=30;QD=1.43;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:2,33:37:9:85,9,0
chrVIII	551423	.	A	C	417	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=47;Dels=0.00;FS=3.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.07;MQ0=23;MQRankSum=-1.734;QD=8.87;ReadPosRankSum=1.589;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:48:450,48,0
chrVIII	551439	.	A	T	380	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.05;MQ0=20;QD=9.27;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:42:413,42,0
chrVIII	551453	.	G	A	280	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=20.61;MQ0=19;QD=7.00;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:33:313,33,0
chrVIII	551514	.	A	G	269	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.74;MQ0=15;QD=8.68;SB=-1.379e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:33:302,33,0
chrVIII	551523	.	T	C	266	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.23;MQ0=17;QD=8.06;SB=-1.379e+02	GT:AD:DP:GQ:PL	1/1:1,31:33:33:299,33,0
chrVIII	551560	.	A	T	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.14;MQ0=36;QD=0.57;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:6:54,6,0
chrVIII	551664	.	C	T	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.62;MQ0=63;QD=0.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,67:67:6:57,6,0
chrVIII	551696	.	C	T	143.13	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=12.02;MQ0=51;QD=2.43;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:18:176,18,0
chrVIII	551828	.	A	G	96.26	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.35;MQ0=34;QD=2.19;SB=-2.776e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:15:129,15,0
chrVIII	551842	.	A	C	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.55;MQ0=40;QD=0.37;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,46:46:6:48,6,0
chrVIII	552003	.	C	T	77.51	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.46;MQ0=47;QD=1.41;SB=-4.542e-01	GT:AD:DP:GQ:PL	1/1:0,54:55:12:110,12,0
chrVIII	552173	.	A	G	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=7.88;MQ0=35;MQRankSum=0.742;QD=0.45;ReadPosRankSum=0.742;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:2,40:42:6:50,6,0
chrVIII	553052	.	G	A	129.13	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.07;MQ0=22;QD=4.17;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,30:31:18:162,18,0
chrVIII	553158	.	C	A	1425	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.67;MQ0=1;QD=25.91;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1458,150,0
chrVIII	553366	.	G	A	475	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=14;QD=14.39;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:51:508,51,0
chrVIII	553543	.	T	A	5515.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=11.6177;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=1.295;QD=24.84;ReadPosRankSum=1.701;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:1,221:222:99:5515,574,0
chrVIII	553563	.	A	T	4574.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=8.645;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=1.070;QD=24.99;ReadPosRankSum=1.694;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,182:183:99:4574,481,0
chrVIII	553593	.	G	A	2764	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=23.83;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2797,291,0
chrVIII	553606	.	A	T	1716	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=20.67;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1749,177,0
chrVIII	553644	.	A	G	685	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.28;MQ0=0;QD=18.03;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:718,78,0
chrVIII	553671	.	G	A	749	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.56;MQ0=0;QD=20.24;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:782,81,0
chrVIII	553722	.	C	T	532	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=17.73;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:57:565,57,0
chrVIII	553739	.	G	C	875	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=19.02;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:908,99,0
chrVIII	553759	.	A	G	1170	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.15;MQ0=0;QD=19.83;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1203,126,0
chrVIII	553823	.	G	A	3396.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.23;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,159:160:99:3396,357,0
chrVIII	553912	.	G	C	1836	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.86;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1869,192,0
chrVIII	553928	.	G	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;QD=19.03;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1441,153,0
chrVIII	553968	.	T	C	619	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;QD=17.19;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:69:652,69,0
chrVIII	553982	.	T	C	580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;MQRankSum=0.866;QD=16.11;ReadPosRankSum=1.636;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:66:613,66,0
chrVIII	554022	.	G	C	473	SnpCluster	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=15.77;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:54:506,54,0
chrVIII	554028	.	C	T	395	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;QD=12.74;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:48:428,48,0
chrVIII	554031	.	C	A	429	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=13.00;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:51:462,51,0
chrVIII	554038	.	T	G	375	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.16;MQ0=0;QD=11.36;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:45:408,45,0
chrVIII	554063	.	A	G	229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.36;MQ0=0;MQRankSum=1.609;QD=8.18;ReadPosRankSum=1.609;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:1,27:28:30:262,30,0
chrVIII	554104	.	T	C	137.13	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=5.71;SB=-2.631e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:18:170,18,0
chrVIII	554135	.	G	A	195.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.01;MQ0=0;QD=9.29;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:24:228,24,0
chrVIII	554142	.	G	A	198.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=9.90;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:24:231,24,0
chrVIII	554143	.	T	A	194.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.91;MQ0=0;QD=9.70;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:24:227,24,0
chrVIII	554162	.	C	T	232.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=0;QD=9.28;SB=-1.250e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:27:265,27,0
chrVIII	554170	.	T	C	180.03	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=3.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;MQRankSum=-1.467;QD=6.92;ReadPosRankSum=1.600;SB=-1.200e+02	GT:AD:DP:GQ:PL	1/1:1,25:26:24:213,24,0
chrVIII	554171	.	C	T	145.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=3.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;MQRankSum=-1.467;QD=5.58;ReadPosRankSum=1.600;SB=-9.407e+01	GT:AD:DP:GQ:PL	1/1:1,25:26:21:178,21,0
chrVIII	554202	.	A	G	461	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.14;MQ0=0;QD=14.41;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:51:494,51,0
chrVIII	554280	.	C	T	1249	filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=4;QD=18.92;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1282,135,0
chrVIII	554298	.	T	A	1267	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=39.58;MQ0=4;MQRankSum=-1.215;QD=17.36;ReadPosRankSum=1.629;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1300,138,0
chrVIII	554340	.	A	T	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=82;Dels=0.00;FS=6.424;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=2;MQRankSum=1.031;QD=21.98;ReadPosRankSum=1.688;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1835,192,0
chrVIII	554360	.	T	A	1497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=0.662;QD=21.70;ReadPosRankSum=2.343;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1530,156,0
chrVIII	554362	.	A	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=47.26;MQ0=0;QD=22.21;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1521,159,0
chrVIII	554434	.	T	C	270	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.31;MQ0=1;QD=13.50;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:33:303,33,0
chrVIII	554443	.	C	T	244	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.34;MQ0=1;QD=13.56;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:30:277,30,0
chrVIII	554454	.	C	A	164.06	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=1;QD=10.94;SB=-8.094e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:21:197,21,0
chrVIII	554467	.	A	T	92.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.49;MQ0=0;QD=7.69;SB=-5.414e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:15:125,15,0
chrVIII	554470	.	G	C	98.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=7.56;SB=-5.520e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:15:131,15,0
chrVIII	554476	.	A	G	121.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.94;MQ0=0;QD=7.57;SB=-2.812e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:18:154,18,0
chrVIII	554602	.	T	C	1597	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=79;Dels=0.00;FS=5.575;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=6;MQRankSum=-1.071;QD=20.22;ReadPosRankSum=2.818;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:3,74:79:99:1630,177,0
chrVIII	554805	.	C	T	746	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.26;MQ0=9;QD=17.35;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:779,81,0
chrVIII	554827	.	T	C	472	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=10;QD=13.11;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:57:505,57,0
chrVIII	554852	.	A	G	185.03	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.73;MQ0=10;QD=7.40;SB=-5.604e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:24:218,24,0
chrVIII	554853	.	C	A	165.06	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.83;MQ0=9;QD=7.18;SB=-5.607e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:21:198,21,0
chrVIII	554984	.	T	C	1148	filter	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=6;QD=16.88;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1181,126,0
chrVIII	555208	.	G	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0933;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=3;QD=24.08;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1454,153,0
chrVIII	555254	.	G	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=1;QD=24.94;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1604,168,0
chrVIII	555327	.	G	A	1032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.556;DP=56;Dels=0.00;FS=4.455;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.56;MQ0=2;MQRankSum=-0.490;QD=18.43;ReadPosRankSum=-0.163;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:89:1065,89,0
chrVIII	555360	.	C	T	524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.201;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=3;MQRankSum=1.652;QD=11.39;ReadPosRankSum=-0.201;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:60:557,60,0
chrVIII	555421	.	T	C	920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.686;DP=58;Dels=0.00;FS=2.915;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=3;MQRankSum=2.271;QD=15.86;ReadPosRankSum=1.776;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:953,102,0
chrVIII	555454	.	T	C	1134	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=64;Dels=0.00;FS=3.332;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=37.25;MQ0=7;MQRankSum=-1.547;QD=17.72;ReadPosRankSum=1.609;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1167,126,0
chrVIII	555571	.	T	C	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=3.033;HaplotypeScore=7.1452;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;MQRankSum=1.973;QD=17.44;ReadPosRankSum=2.397;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:2,91:94:99:1672,177,0
chrVIII	555736	.	C	T	560	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=1;QD=9.03;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:63:593,63,0
chrVIII	555742	.	A	G	528	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.93;MQ0=1;QD=8.38;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:60:561,60,0
chrVIII	555748	.	C	G	450	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=26.90;MQ0=0;MQRankSum=0.000;QD=7.26;ReadPosRankSum=1.509;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:54:483,54,0
chrVIII	555751	.	C	T	476	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=7.80;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:54:509,54,0
chrVIII	555754	.	T	A	507	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=27.21;MQ0=0;QD=8.31;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:57:540,57,0
chrVIII	555848	.	A	G	2511	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=24.14;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2544,267,0
chrVIII	555856	.	A	G	2329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=112;Dels=0.00;FS=10.943;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;MQRankSum=-0.353;QD=20.79;ReadPosRankSum=2.404;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:2,106:112:99:2362,252,0
chrVIII	555862	.	T	G	2504	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.4739;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=22.76;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2537,270,0
chrVIII	555971	.	T	A	646	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=10.42;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:72:679,72,0
chrVIII	555991	.	C	A	261	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.28;MQ0=0;QD=5.67;SB=-1.759e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:33:294,33,0
chrVIII	555993	.	G	A	254	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.12;MQ0=0;QD=5.64;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:33:287,33,0
chrVIII	556005	.	T	A	298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=6.532;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=0;MQRankSum=-1.424;QD=6.62;ReadPosRankSum=1.578;SB=-1.540e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:36:331,36,0
chrVIII	556025	.	C	T	771	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=16.40;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:804,84,0
chrVIII	556053	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=17.79;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1741,189,0
chrVIII	556135	.	T	A	4483.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DP=270;Dels=0.00;FS=89.875;HaplotypeScore=86.7120;MLEAC=1;MLEAF=0.500;MQ=36.17;MQ0=2;MQRankSum=1.561;QD=16.60;ReadPosRankSum=-3.114;SB=-2.161e+03	GT:AD:DP:GQ:PL	0/1:52,218:270:99:4483,0,497
chrVIII	556148	.	C	T	475.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=9.088;DP=258;Dels=0.00;FS=56.182;HaplotypeScore=40.7274;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=3;MQRankSum=-1.392;QD=1.84;ReadPosRankSum=3.724;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:212,43:258:99:505,0,4158
chrVIII	556149	.	G	A	453.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.111;DP=254;Dels=0.00;FS=55.916;HaplotypeScore=35.2840;MLEAC=1;MLEAF=0.500;MQ=34.70;MQ0=3;MQRankSum=-0.227;QD=1.78;ReadPosRankSum=1.502;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:204,50:254:99:483,0,4040
chrVIII	556162	.	T	A	410.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.601;DP=253;Dels=0.00;FS=56.708;HaplotypeScore=21.2703;MLEAC=1;MLEAF=0.500;MQ=33.13;MQ0=6;MQRankSum=-0.683;QD=1.62;ReadPosRankSum=-0.531;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:211,42:253:99:440,0,4173
chrVIII	556178	.	A	G,T	4424.01	filter	AC=1,1;AF=0.500,0.500;AN=2;DP=219;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.29;MQ0=4;QD=20.20;SB=-1.543e+03	GT:AD:DP:GQ:PL	1/2:0,49,170:219:99:4424,3554,3441,869,0,417
chrVIII	556180	.	A	G	3416.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.299;DP=213;Dels=0.00;FS=33.381;HaplotypeScore=13.3880;MLEAC=1;MLEAF=0.500;MQ=31.36;MQ0=4;MQRankSum=2.818;QD=16.04;ReadPosRankSum=4.604;SB=-1.423e+03	GT:AD:DP:GQ:PL	0/1:45,168:213:99:3416,0,138
chrVIII	556212	.	T	C	1630	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.473;DP=89;Dels=0.00;FS=8.098;HaplotypeScore=6.9482;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=7;MQRankSum=4.351;QD=18.31;ReadPosRankSum=-3.870;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:16,72:89:99:1663,151,0
chrVIII	556225	.	A	T	825.46	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;DP=75;Dels=0.00;FS=12.314;HaplotypeScore=5.5868;MLEAC=1;MLEAF=0.500;MQ=25.60;MQ0=9;MQRankSum=4.472;QD=11.01;ReadPosRankSum=-0.117;SB=-2.573e+02	GT:AD:DP:GQ:PL	0/1:21,53:75:1:854,0,1
chrVIII	556241	.	T	C	649.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;DP=73;Dels=0.00;FS=77.331;HaplotypeScore=7.4849;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=8;MQRankSum=6.104;QD=8.89;ReadPosRankSum=1.735;SB=-4.100e+01	GT:AD:DP:GQ:PL	0/1:37,36:73:99:679,0,152
chrVIII	556252	.	A	G	418.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.005;DP=64;Dels=0.00;FS=98.116;HaplotypeScore=15.1731;MLEAC=1;MLEAF=0.500;MQ=22.09;MQ0=7;MQRankSum=5.422;QD=6.53;ReadPosRankSum=3.022;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:39,24:64:99:448,0,313
chrVIII	556256	.	T	G	438.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.203;DP=64;Dels=0.00;FS=98.839;HaplotypeScore=35.1332;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=5;MQRankSum=5.378;QD=6.84;ReadPosRankSum=1.575;SB=-6.517e-03	GT:AD:DP:GQ:PL	0/1:36,28:64:99:468,0,308
chrVIII	556262	.	C	T	104.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;DP=57;Dels=0.00;FS=12.014;HaplotypeScore=45.6921;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=4;MQRankSum=-3.801;QD=1.82;ReadPosRankSum=4.689;SB=-3.601e+01	GT:AD:DP:GQ:PL	0/1:40,17:57:99:134,0,649
chrVIII	556263	.	G	A	645.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.988;DP=52;Dels=0.00;FS=50.324;HaplotypeScore=42.0816;MLEAC=1;MLEAF=0.500;MQ=22.87;MQ0=4;MQRankSum=2.012;QD=12.40;ReadPosRankSum=3.964;SB=-1.040e+02	GT:AD:DP:GQ:PL	0/1:14,38:52:49:675,0,49
chrVIII	556264	.	G	A	640.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;DP=52;Dels=0.00;FS=30.719;HaplotypeScore=45.9802;MLEAC=1;MLEAF=0.500;MQ=22.87;MQ0=4;MQRankSum=1.895;QD=12.31;ReadPosRankSum=2.919;SB=-1.950e+02	GT:AD:DP:GQ:PL	0/1:9,43:52:52:670,0,52
chrVIII	556269	.	T	C	341.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480;DP=55;Dels=0.00;FS=47.703;HaplotypeScore=68.7082;MLEAC=1;MLEAF=0.500;MQ=22.75;MQ0=3;MQRankSum=4.731;QD=6.20;ReadPosRankSum=-2.956;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:29,26:55:99:371,0,341
chrVIII	556272	.	G	A	17.09	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.225;DP=56;Dels=0.00;FS=31.507;HaplotypeScore=68.7082;MLEAC=1;MLEAF=0.500;MQ=22.79;MQ0=2;MQRankSum=-1.911;QD=0.31;ReadPosRankSum=-0.207;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,8:56:47:47,0,698
chrVIII	556273	.	C	A,G	796.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=24.3684;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.79;MQ0=2;QD=14.21;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/2:0,29,27:56:99:856,437,377,419,0,365
chrVIII	556274	.	C	T	372.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;DP=57;Dels=0.00;FS=85.697;HaplotypeScore=49.4845;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=3;MQRankSum=4.443;QD=6.53;ReadPosRankSum=-2.694;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,23:57:99:402,0,365
chrVIII	556275	.	C	T	370.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.134;DP=57;Dels=0.00;FS=76.206;HaplotypeScore=41.8162;MLEAC=1;MLEAF=0.500;MQ=22.59;MQ0=3;MQRankSum=4.419;QD=6.49;ReadPosRankSum=-2.667;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,23:57:99:400,0,357
chrVIII	556288	.	A	G	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;DP=86;Dels=0.00;FS=38.360;HaplotypeScore=10.6405;MLEAC=1;MLEAF=0.500;MQ=21.94;MQ0=5;MQRankSum=-1.592;QD=0.19;ReadPosRankSum=3.027;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,10:86:46:46,0,847
chrVIII	556311	.	G	C	778.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;DP=97;Dels=0.00;FS=55.382;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=6;MQRankSum=2.728;QD=8.02;ReadPosRankSum=1.333;SB=-6.401e+01	GT:AD:DP:GQ:PL	0/1:34,62:97:99:808,0,299
chrVIII	556344	.	G	A	335.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.001;DP=113;Dels=0.00;FS=28.087;HaplotypeScore=3.3555;MLEAC=1;MLEAF=0.500;MQ=25.13;MQ0=4;MQRankSum=3.401;QD=2.96;ReadPosRankSum=-0.207;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,28:113:99:365,0,1067
chrVIII	556365	.	T	G	13.22	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.6722;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=1;MQRankSum=1.244;QD=0.10;ReadPosRankSum=2.414;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:100,35:135:43:43,0,1621
chrVIII	556369	.	G	A	2163	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.977;DP=131;Dels=0.00;FS=7.197;HaplotypeScore=10.6511;MLEAC=2;MLEAF=1.00;MQ=27.62;MQ0=1;MQRankSum=2.185;QD=16.51;ReadPosRankSum=2.412;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:2,129:131:99:2196,240,0
chrVIII	556370	.	G	A	1807	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=130;Dels=0.00;FS=109.378;HaplotypeScore=10.6076;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=1;MQRankSum=-0.345;QD=13.90;ReadPosRankSum=1.090;SB=-1.200e-02	GT:AD:DP:GQ:PL	1/1:9,120:130:32:1840,32,0
chrVIII	556377	.	G	T	319.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;DP=146;Dels=0.00;FS=16.554;HaplotypeScore=25.8911;MLEAC=1;MLEAF=0.500;MQ=27.98;MQ0=0;MQRankSum=0.270;QD=2.18;ReadPosRankSum=2.397;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:111,35:146:99:349,0,1716
chrVIII	556380	.	T	C	298.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.426;DP=140;Dels=0.00;FS=11.591;HaplotypeScore=25.8911;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=0;MQRankSum=0.654;QD=2.13;ReadPosRankSum=2.256;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:106,33:140:99:328,0,1784
chrVIII	556384	.	C	T	2740	SnpCluster	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=15.4843;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=19.57;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2773,291,0
chrVIII	556387	.	A	G	2048.76	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;DP=145;Dels=0.00;FS=136.759;HaplotypeScore=44.3062;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=1;MQRankSum=0.368;QD=14.13;ReadPosRankSum=-1.202;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:15,128:145:6:2080,6,0
chrVIII	556396	.	T	A	1340.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;DP=138;Dels=0.00;FS=121.395;HaplotypeScore=143.0835;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=2;MQRankSum=-0.634;QD=9.71;ReadPosRankSum=1.464;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:23,88:138:99:1370,0,281
chrVIII	556397	.	T	A	1768.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;DP=138;Dels=0.00;FS=135.629;HaplotypeScore=143.0835;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=2;MQRankSum=1.644;QD=12.81;ReadPosRankSum=1.289;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:23,115:138:99:1798,0,208
chrVIII	556399	.	G	A	176.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.407;DP=139;Dels=0.00;FS=11.455;HaplotypeScore=130.2322;MLEAC=1;MLEAF=0.500;MQ=28.41;MQ0=2;MQRankSum=-0.495;QD=1.27;ReadPosRankSum=1.101;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:112,27:139:99:206,0,1730
chrVIII	556420	.	T	G	1625.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;DP=124;Dels=0.00;FS=119.710;HaplotypeScore=66.9085;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=3;MQRankSum=0.338;QD=13.10;ReadPosRankSum=-1.501;SB=-7.102e+01	GT:AD:DP:GQ:PL	0/1:11,113:124:50:1655,0,50
chrVIII	556481	.	C	G	459.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;DP=64;Dels=0.00;FS=9.647;HaplotypeScore=48.2401;MLEAC=1;MLEAF=0.500;MQ=25.91;MQ0=2;MQRankSum=0.402;QD=7.17;ReadPosRankSum=2.484;SB=-1.401e+01	GT:AD:DP:GQ:PL	0/1:23,41:64:92:489,0,92
chrVIII	556492	.	T	G	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.4675;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=0;MQRankSum=-0.766;QD=0.59;ReadPosRankSum=-1.655;SB=1.24	GT:AD:DP:GQ:PL	1/1:33,9:42:6:56,6,0
chrVIII	556494	.	A	G	29.77	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=11.8465;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=0;MQRankSum=-0.920;QD=0.71;ReadPosRankSum=-1.962;SB=1.24	GT:AD:DP:GQ:PL	1/1:33,9:42:6:61,6,0
chrVIII	556504	.	A	G	489	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.665;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=13.6718;MLEAC=2;MLEAF=1.00;MQ=25.31;MQ0=0;MQRankSum=3.611;QD=8.58;ReadPosRankSum=0.109;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:7,50:57:36:522,36,0
chrVIII	556546	.	A	G	121.02	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;DP=46;Dels=0.00;FS=12.771;HaplotypeScore=16.4871;MLEAC=1;MLEAF=0.500;MQ=22.46;MQ0=4;MQRankSum=2.417;QD=2.63;ReadPosRankSum=0.340;SB=-5.586e+01	GT:AD:DP:GQ:PL	0/1:12,30:46:21:151,0,21
chrVIII	556547	.	G	A	125.03	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;DP=45;Dels=0.00;FS=5.400;HaplotypeScore=14.5895;MLEAC=1;MLEAF=0.500;MQ=22.56;MQ0=4;MQRankSum=3.899;QD=2.78;ReadPosRankSum=-0.486;SB=-4.997e+01	GT:AD:DP:GQ:PL	0/1:15,30:45:20:155,0,20
chrVIII	556555	.	G	A	271	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.028;DP=49;Dels=0.00;FS=16.734;HaplotypeScore=45.8944;MLEAC=2;MLEAF=1.00;MQ=22.91;MQ0=4;MQRankSum=-0.193;QD=5.53;ReadPosRankSum=-0.578;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:2,47:49:36:304,36,0
chrVIII	556562	.	C	T	178.01	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=6.7035;MLEAC=2;MLEAF=1.00;MQ=22.25;MQ0=4;QD=3.96;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:27:211,27,0
chrVIII	556575	.	T	C	58.42	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;DP=44;Dels=0.00;FS=30.154;HaplotypeScore=16.5248;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=13;MQRankSum=1.324;QD=1.33;ReadPosRankSum=-1.403;SB=-3.123e+01	GT:AD:DP:GQ:PL	0/1:27,17:44:7:88,0,7
chrVIII	556598	.	A	T	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470;DP=35;Dels=0.00;FS=4.545;HaplotypeScore=4.9107;MLEAC=1;MLEAF=0.500;MQ=16.76;MQ0=13;MQRankSum=1.880;QD=0.38;ReadPosRankSum=-3.133;SB=-1.401e+01	GT:AD:DP:GQ:PL	0/1:28,7:35:43:43,0,101
chrVIII	556623	.	A	G	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DP=35;Dels=0.00;FS=7.463;HaplotypeScore=8.9942;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=10;MQRankSum=-2.968;QD=0.52;ReadPosRankSum=1.470;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,10:35:48:48,0,189
chrVIII	556633	.	G	A	90.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=20.5909;MLEAC=1;MLEAF=0.500;MQ=20.34;MQ0=7;MQRankSum=3.051;QD=2.57;ReadPosRankSum=-1.372;SB=-1.201e+01	GT:AD:DP:GQ:PL	0/1:29,6:35:99:120,0,190
chrVIII	556662	.	A	G	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=14.5435;MLEAC=1;MLEAF=0.500;MQ=20.46;MQ0=4;MQRankSum=1.774;QD=0.26;ReadPosRankSum=0.000;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,4:40:40:40,0,305
chrVIII	556667	.	A	G	38.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;DP=42;Dels=0.00;FS=2.409;HaplotypeScore=19.3750;MLEAC=1;MLEAF=0.500;MQ=19.79;MQ0=6;MQRankSum=-3.804;QD=0.90;ReadPosRankSum=-2.308;SB=-2.401e+01	GT:AD:DP:GQ:PL	0/1:20,20:42:68:68,0,240
chrVIII	556767	.	G	A	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DP=26;Dels=0.00;FS=12.693;HaplotypeScore=5.7256;MLEAC=1;MLEAF=0.500;MQ=20.21;MQ0=2;MQRankSum=2.477;QD=0.44;ReadPosRankSum=-0.953;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:19,7:26:41:41,0,71
chrVIII	556769	.	G	A	38.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;DP=24;Dels=0.00;FS=7.140;HaplotypeScore=4.7309;MLEAC=1;MLEAF=0.500;MQ=20.95;MQ0=2;MQRankSum=2.764;QD=1.58;ReadPosRankSum=-1.058;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:16,8:24:39:68,0,39
chrVIII	556785	.	G	A	54.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.489;DP=18;Dels=0.00;FS=6.021;HaplotypeScore=7.4465;MLEAC=2;MLEAF=1.00;MQ=22.55;MQ0=1;MQRankSum=2.489;QD=3.05;ReadPosRankSum=2.293;SB=3.22	GT:AD:DP:GQ:PL	1/1:8,10:18:9:87,9,0
chrVIII	556808	.	G	A	80.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.7867;MLEAC=2;MLEAF=1.00;MQ=27.63;MQ0=0;MQRankSum=-0.751;QD=8.95;ReadPosRankSum=0.751;SB=-2.618e+01	GT:AD:DP:GQ:PL	1/1:1,8:9:12:113,12,0
chrVIII	556813	.	A	G	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;DP=10;Dels=0.00;FS=3.522;HaplotypeScore=11.3409;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=0;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.729;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:6,4:10:44:44,0,45
chrVIII	556892	.	T	G	12.35	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=20.7928;MLEAC=1;MLEAF=0.500;MQ=23.63;MQ0=13;MQRankSum=0.375;QD=0.29;ReadPosRankSum=-0.648;SB=-1.609e+01	GT:AD:DP:GQ:PL	0/1:36,4:41:14:42,0,14
chrVIII	556931	.	G	T	136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;DP=45;Dels=0.02;FS=21.656;HaplotypeScore=41.0413;MLEAC=1;MLEAF=0.500;MQ=25.47;MQ0=11;MQRankSum=2.307;QD=3.02;ReadPosRankSum=1.559;SB=-3.601e+01	GT:AD:DP:GQ:PL	0/1:21,21:44:53:166,0,53
chrVIII	556984	.	T	G	32.14	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;DP=27;Dels=0.04;FS=27.868;HaplotypeScore=33.0614;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=6;MQRankSum=0.584;QD=1.19;ReadPosRankSum=1.434;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,4:26:12:62,0,12
chrVIII	557342	.	T	C	114.26	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=22.33;MQ0=3;QD=5.71;SB=-2.556e-01	GT:AD:DP:GQ:PL	1/1:1,19:20:15:147,15,0
chrVIII	560292	.	T	A	159.06	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.11;MQ0=41;QD=2.21;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:28,44:72:21:192,21,0
chrVIII	560634	.	T	C	47.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DP=415;Dels=0.00;FS=19.411;HaplotypeScore=3.1412;MLEAC=1;MLEAF=0.500;MQ=11.51;MQ0=247;MQRankSum=1.551;QD=0.11;ReadPosRankSum=2.019;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:386,28:415:77:77,0,1319
chrVIII	561073	.	A	G	15.17	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=1;MLEAF=0.500;MQ=8.05;MQ0=47;MQRankSum=2.150;QD=0.23;ReadPosRankSum=-0.850;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:60,5:66:19:45,0,19
chrX	15965	.	T	C	378.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;DP=90;Dels=0.00;FS=1.255;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=15.97;MQ0=42;MQRankSum=-1.090;QD=4.20;ReadPosRankSum=-0.245;SB=-2.000e+02	GT:AD:DP:GQ:PL	0/1:38,50:90:99:408,0,270
chrX	16311	.	G	A	82.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.23;MQ0=63;MQRankSum=-1.244;QD=0.89;ReadPosRankSum=-2.025;SB=-7.889e-03	GT:AD:DP:GQ:PL	0/1:61,31:92:32:112,0,32
chrX	16325	.	G	A	113.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.471;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.48;MQ0=57;MQRankSum=-1.857;QD=1.10;ReadPosRankSum=0.542;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,39:103:99:143,0,145
chrX	16333	.	C	T	137.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=12.81;MQ0=58;MQRankSum=-1.425;QD=1.27;ReadPosRankSum=1.142;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,42:108:99:167,0,141
chrX	18544	.	T	C	89.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.68;MQ0=46;MQRankSum=-0.065;QD=1.48;ReadPosRankSum=-0.839;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,25:60:99:119,0,182
chrX	18553	.	A	T	123.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=14.88;MQ0=50;MQRankSum=-0.263;QD=1.86;ReadPosRankSum=-1.523;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,29:66:99:153,0,169
chrX	18791	.	G	C	438.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;DP=82;Dels=0.00;FS=2.944;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=43;MQRankSum=-0.235;QD=5.34;ReadPosRankSum=-0.172;SB=-1.930e+02	GT:AD:DP:GQ:PL	0/1:36,43:82:99:468,0,194
chrX	20312	.	T	A	78.51	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=1;QD=13.09;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:12:111,12,0
chrX	20336	.	C	T	78.51	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=1;QD=13.09;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,6:6:12:111,12,0
chrX	21113	.	G	A	257	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.19;MQ0=0;QD=18.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,14:14:33:290,33,0
chrX	21125	.	A	G	159.06	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=17.67;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,9:9:21:192,21,0
chrX	21131	.	C	T	133.13	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=22.19;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:18:166,18,0
chrX	24461	.	C	A	361	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=19.00;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:42:394,42,0
chrX	24473	.	A	G	559	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;QD=20.70;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:63:592,63,0
chrX	24488	.	A	C,T	692.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=1,1;MLEAF=0.500,0.500;MQ=32.38;MQ0=0;QD=16.48;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/2:0,19,23:42:99:752,434,395,318,0,267
chrX	24532	.	G	A	2718	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=24.05;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2751,291,0
chrX	24640	.	T	C	1843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=92;Dels=0.00;FS=3.908;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;MQRankSum=-1.199;QD=20.03;ReadPosRankSum=1.694;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1876,207,0
chrX	24647	.	T	A	1908	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=21.93;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1941,207,0
chrX	24710	.	G	A	183.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=12.20;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:27:216,27,0
chrX	24716	.	C	T	160.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=16.00;SB=-8.797e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:24:193,24,0
chrX	24719	.	C	T	162.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.90;MQ0=0;QD=16.20;SB=-8.597e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:24:195,24,0
chrX	24737	.	C	T	40.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.66;MQ0=0;QD=10.24;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,4:4:9:73,9,0
chrX	24803	.	A	G	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.97;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:0,7:7:6:52,6,0
chrX	24821	.	A	T	285	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=16.76;SB=-9.201e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:36:318,36,0
chrX	24839	.	A	C	476	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=0;QD=19.83;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:60:509,60,0
chrX	24857	.	T	G	610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=0.683;QD=18.48;ReadPosRankSum=1.103;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:75:643,75,0
chrX	24873	.	A	G	719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=7.404;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;MQRankSum=0.630;QD=16.34;ReadPosRankSum=-0.394;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:71:752,71,0
chrX	24887	.	C	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=18.40;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1045,114,0
chrX	24908	.	G	A	827	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=0;QD=17.60;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:93:860,93,0
chrX	24926	.	T	C	703	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.74;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:78:736,78,0
chrX	24935	.	G	A	602	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.33;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:66:635,66,0
chrX	24938	.	G	A	596	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.11;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:66:629,66,0
chrX	24941	.	A	G	218.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.179;QD=5.74;ReadPosRankSum=-0.149;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:15,23:38:99:248,0,190
chrX	24944	.	A	C	496	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.17;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:60:529,60,0
chrX	24947	.	A	T	560	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.47;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:63:593,63,0
chrX	24968	.	G	A	485	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;QD=15.16;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:57:518,57,0
chrX	24971	.	A	G	430	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=0;MQRankSum=-0.108;QD=13.44;ReadPosRankSum=1.625;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:1,31:32:51:463,51,0
chrX	24974	.	A	G	423	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.06;MQ0=0;MQRankSum=-0.615;QD=13.65;ReadPosRankSum=1.621;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:1,30:31:51:456,51,0
chrX	24983	.	C	T	366	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;QD=10.46;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:42:399,42,0
chrX	24986	.	G	C	329	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=0;QD=9.68;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:42:362,42,0
chrX	24996	.	T	G	320	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=9.41;SB=-7.201e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:39:353,39,0
chrX	25025	.	A	T	331	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.27;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:39:364,39,0
chrX	25027	.	G	T	359	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=8.97;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:42:392,42,0
chrX	25040	.	A	T	93.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;DP=37;Dels=0.00;FS=22.330;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=27.14;MQ0=0;MQRankSum=0.329;QD=2.51;ReadPosRankSum=1.713;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,13:37:99:123,0,132
chrX	25055	.	C	T	159.06	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.56;MQ0=0;QD=4.68;SB=-4.381e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:21:192,21,0
chrX	25070	.	C	A	96.26	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.66;MQ0=0;QD=3.32;SB=-2.263e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:15:129,15,0
chrX	25079	.	A	G	101.26	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=3.89;SB=-1.593e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:15:134,15,0
chrX	25082	.	T	G	96.26	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;QD=3.44;SB=-1.583e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:15:129,15,0
chrX	25091	.	G	A	181.03	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=5.49;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:24:214,24,0
chrX	25099	.	G	A	248	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=7.09;SB=-1.240e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:30:281,30,0
chrX	25103	.	G	A	249	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=7.78;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:30:282,30,0
chrX	25106	.	T	C	230	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=7.19;SB=-9.602e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:30:263,30,0
chrX	25127	.	G	A	198.03	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=5.35;SB=-2.804e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:24:231,24,0
chrX	25133	.	T	C	187.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=0.127;QD=4.56;ReadPosRankSum=1.648;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:1,40:41:24:220,24,0
chrX	25145	.	A	G	194.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=4.73;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,41:41:24:227,24,0
chrX	25151	.	T	C	197.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=4.69;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,42:42:24:230,24,0
chrX	25154	.	G	A	263	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.78;MQ0=0;QD=5.98;SB=-1.520e-02	GT:AD:DP:GQ:PL	1/1:0,44:44:30:296,30,0
chrX	25160	.	G	A	286	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=6.36;SB=-8.701e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:36:319,36,0
chrX	25165	.	T	C	215.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=5.24;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,41:41:27:248,27,0
chrX	25166	.	T	A	226.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=5.51;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,41:41:27:259,27,0
chrX	25169	.	G	A	233.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=1.568;QD=5.55;ReadPosRankSum=1.650;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:1,41:42:27:266,27,0
chrX	25170	.	T	C	207.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=4.93;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,42:42:27:240,27,0
chrX	25175	.	A	G	199.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=4.33;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,46:46:27:232,27,0
chrX	25190	.	C	T	142.13	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.23;MQ0=0;QD=2.84;SB=-4.314e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:18:175,18,0
chrX	25208	.	A	G	201.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=3.59;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:27:234,27,0
chrX	25211	.	T	A	199.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.126;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;MQRankSum=0.628;QD=3.21;ReadPosRankSum=2.369;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:27:232,27,0
chrX	25214	.	T	C	244	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.96;MQ0=0;QD=3.75;SB=-1.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:33:277,33,0
chrX	25223	.	T	C	333	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=5.29;SB=-1.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:42:366,42,0
chrX	25232	.	G	A	319	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=5.23;SB=-1.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:42:352,42,0
chrX	25238	.	A	G	337	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=5.71;SB=-1.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:42:370,42,0
chrX	25239	.	A	T	364	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=0;QD=6.17;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:45:397,45,0
chrX	25241	.	T	G	49.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.319;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=-1.252;QD=0.80;ReadPosRankSum=0.888;SB=-4.101e+01	GT:AD:DP:GQ:PL	0/1:40,21:61:79:79,0,214
chrX	25243	.	T	G	339	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.72;MQ0=0;QD=5.56;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:45:372,45,0
chrX	25250	.	G	C	294	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=4.90;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:39:327,39,0
chrX	25259	.	C	T	354	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=5.71;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:45:387,45,0
chrX	25262	.	G	A	341	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=5.50;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:42:374,42,0
chrX	25264	.	T	C	345	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=27.90;MQ0=0;QD=5.56;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:45:378,45,0
chrX	25298	.	C	T	476	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.32;MQ0=0;QD=8.35;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:1,56:57:57:509,57,0
chrX	25304	.	A	G	424	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=8.48;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:51:457,51,0
chrX	25306	.	C	T	460	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=9.39;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:54:493,54,0
chrX	25310	.	C	A	430	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=8.78;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:48:463,48,0
chrX	25313	.	G	A	442	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.82;MQ0=0;QD=8.50;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,52:52:51:475,51,0
chrX	25319	.	G	A	352	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=6.07;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,58:58:42:385,42,0
chrX	25322	.	G	T	364	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.97;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,61:61:42:397,42,0
chrX	25326	.	T	C	399	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.76;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:48:432,48,0
chrX	25340	.	A	G	413	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.00;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:48:446,48,0
chrX	25346	.	A	G	412	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=6.75;SB=-7.101e+01	GT:AD:DP:GQ:PL	1/1:0,61:61:51:445,51,0
chrX	25349	.	G	A	493	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;QD=8.36;SB=-1.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:54:526,54,0
chrX	25352	.	A	T	473	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=7.75;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:54:506,54,0
chrX	25358	.	C	T	497	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=8.28;SB=-1.250e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:57:530,57,0
chrX	25550	.	A	G	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;DP=86;Dels=0.00;FS=9.287;HaplotypeScore=11.4522;MLEAC=1;MLEAF=0.500;MQ=44.17;MQ0=0;MQRankSum=-3.355;QD=0.13;ReadPosRankSum=-0.505;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,12:86:41:41,0,1234
chrX	25562	.	A	G	38.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;DP=80;Dels=0.00;FS=13.370;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=42.02;MQ0=0;MQRankSum=-4.450;QD=0.48;ReadPosRankSum=0.123;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,15:80:68:68,0,1200
chrX	25563	.	A	G	1534	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=18.94;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1567,168,0
chrX	25569	.	A	T	90.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.337;DP=84;Dels=0.00;FS=16.610;HaplotypeScore=8.0560;MLEAC=1;MLEAF=0.500;MQ=40.69;MQ0=0;MQRankSum=-2.779;QD=1.07;ReadPosRankSum=-0.868;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:63,21:84:99:120,0,1148
chrX	25622	.	A	G	1268.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.113;DP=139;Dels=0.00;FS=3.083;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=40.43;MQ0=0;MQRankSum=2.950;QD=9.12;ReadPosRankSum=-0.978;SB=-7.200e+02	GT:AD:DP:GQ:PL	0/1:63,73:139:99:1298,0,1074
chrX	25674	.	T	A	808.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;DP=130;Dels=0.00;FS=3.375;HaplotypeScore=11.2879;MLEAC=1;MLEAF=0.500;MQ=44.32;MQ0=0;MQRankSum=-5.736;QD=6.22;ReadPosRankSum=0.744;SB=-3.370e+02	GT:AD:DP:GQ:PL	0/1:79,51:130:99:838,0,1493
chrX	25720	.	C	T	2576	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=23.00;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2609,279,0
chrX	25877	.	G	T	2343	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.90;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:1,104:107:99:2376,252,0
chrX	26027	.	A	G	377.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=51.51;MQ0=0;MQRankSum=-8.204;QD=3.37;ReadPosRankSum=-1.160;SB=-1.950e+02	GT:AD:DP:GQ:PL	0/1:75,37:112:99:407,0,1323
chrX	26030	.	A	G	273.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.608;DP=111;Dels=0.00;FS=0.852;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=51.86;MQ0=0;MQRankSum=-7.981;QD=2.46;ReadPosRankSum=-1.006;SB=-1.350e+02	GT:AD:DP:GQ:PL	0/1:76,35:111:99:303,0,1432
chrX	26039	.	G	A	184.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;DP=110;Dels=0.00;FS=1.024;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=52.46;MQ0=0;MQRankSum=-7.863;QD=1.67;ReadPosRankSum=-0.815;SB=-7.201e+01	GT:AD:DP:GQ:PL	0/1:80,30:110:99:214,0,1487
chrX	26051	.	T	C	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;DP=108;Dels=0.00;FS=4.516;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=53.99;MQ0=0;MQRankSum=-7.219;QD=0.44;ReadPosRankSum=-0.428;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,23:108:78:78,0,1667
chrX	26108	.	C	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.16;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1740,201,0
chrX	26191	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.49;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1495,159,0
chrX	26202	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=6.368;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.666;QD=18.50;ReadPosRankSum=1.679;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1254,144,0
chrX	26272	.	T	C	1089	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=61;Dels=0.00;FS=3.941;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.517;QD=17.85;ReadPosRankSum=1.672;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,56:61:99:1122,123,0
chrX	26368	.	G	A	1233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.346;DP=73;Dels=0.00;FS=33.207;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=4.631;QD=16.89;ReadPosRankSum=3.427;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:13,60:73:99:1266,135,0
chrX	26481	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=4.437;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.485;QD=23.04;ReadPosRankSum=1.663;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1185,129,0
chrX	26556	.	G	A	634	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=20.45;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:72:667,72,0
chrX	26567	.	G	T	620	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=18.79;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:69:653,69,0
chrX	26602	.	C	T	789	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=21.32;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:87:822,87,0
chrX	26631	.	C	T	547	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.65;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:63:580,63,0
chrX	26666	.	G	T	593	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=16.03;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:69:626,69,0
chrX	26695	.	A	G	668	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=16.70;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:78:701,78,0
chrX	26910	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=25.00;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1408,162,0
chrX	26946	.	T	C	901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=47.92;MQ0=0;MQRankSum=-0.332;QD=19.17;ReadPosRankSum=1.659;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:934,108,0
chrX	26958	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1357;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=18.37;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1025,114,0
chrX	26988	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.957;DP=90;Dels=0.00;FS=24.028;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;MQRankSum=4.749;QD=14.61;ReadPosRankSum=2.072;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:29,61:90:99:1348,150,0
chrX	27126	.	C	T	1200.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.725;DP=170;Dels=0.00;FS=41.134;HaplotypeScore=5.9702;MLEAC=1;MLEAF=0.500;MQ=55.57;MQ0=0;MQRankSum=-0.717;QD=7.06;ReadPosRankSum=0.374;SB=-3.070e+02	GT:AD:DP:GQ:PL	0/1:98,72:170:99:1230,0,1675
chrX	27163	.	C	T	1888.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;DP=195;Dels=0.00;FS=50.408;HaplotypeScore=19.8123;MLEAC=1;MLEAF=0.500;MQ=55.65;MQ0=0;MQRankSum=4.064;QD=9.68;ReadPosRankSum=0.340;SB=-8.610e+02	GT:AD:DP:GQ:PL	0/1:67,126:195:99:1918,0,1151
chrX	27203	.	C	T	1551.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.093;DP=190;Dels=0.00;FS=35.195;HaplotypeScore=12.3734;MLEAC=1;MLEAF=0.500;MQ=53.61;MQ0=0;MQRankSum=0.172;QD=8.16;ReadPosRankSum=0.194;SB=-1.012e+03	GT:AD:DP:GQ:PL	0/1:80,107:190:99:1581,0,1503
chrX	27210	.	C	T	3950.01	PASS	AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=18.3376;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.65;SB=-1.756e+03	GT:AD:DP:GQ:PL	1/1:0,200:201:99:3950,432,0
chrX	27301	.	G	A	1242.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.413;DP=147;Dels=0.00;FS=13.237;HaplotypeScore=8.4652;MLEAC=1;MLEAF=0.500;MQ=52.05;MQ0=0;MQRankSum=2.510;QD=8.45;ReadPosRankSum=-0.333;SB=-8.510e+02	GT:AD:DP:GQ:PL	0/1:66,81:147:99:1272,0,1138
chrX	27318	.	C	T	935.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DP=136;Dels=0.00;FS=10.881;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=0;MQRankSum=-0.849;QD=6.88;ReadPosRankSum=-0.324;SB=-5.090e+02	GT:AD:DP:GQ:PL	0/1:72,64:136:99:965,0,1172
chrX	27330	.	G	A	2618	SnpCluster	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=16.78;SB=-1.738e+03	GT:AD:DP:GQ:PL	1/1:0,153:156:99:2651,294,0
chrX	27332	.	T	C	1034.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;DP=168;Dels=0.00;FS=29.132;HaplotypeScore=7.1851;MLEAC=1;MLEAF=0.500;MQ=48.15;MQ0=0;MQRankSum=2.504;QD=6.15;ReadPosRankSum=1.713;SB=-5.430e+02	GT:AD:DP:GQ:PL	0/1:88,80:168:99:1064,0,1116
chrX	27339	.	T	C	1019.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;DP=188;Dels=0.00;FS=7.237;HaplotypeScore=8.7624;MLEAC=1;MLEAF=0.500;MQ=48.08;MQ0=0;MQRankSum=3.117;QD=5.42;ReadPosRankSum=0.972;SB=-7.230e+02	GT:AD:DP:GQ:PL	0/1:96,92:188:99:1049,0,1416
chrX	27345	.	C	G	1336.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.386;DP=187;Dels=0.00;FS=6.194;HaplotypeScore=5.0261;MLEAC=1;MLEAF=0.500;MQ=47.85;MQ0=0;MQRankSum=-2.383;QD=7.14;ReadPosRankSum=-0.387;SB=-8.880e+02	GT:AD:DP:GQ:PL	0/1:93,93:187:99:1366,0,1063
chrX	27429	.	A	T	1900.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.000;DP=209;Dels=0.00;FS=25.583;HaplotypeScore=14.1414;MLEAC=1;MLEAF=0.500;MQ=56.60;MQ0=0;MQRankSum=0.486;QD=9.09;ReadPosRankSum=0.738;SB=-1.103e+03	GT:AD:DP:GQ:PL	0/1:103,106:209:99:1930,0,1919
chrX	27507	.	A	T	1706.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.977;DP=186;Dels=0.00;FS=0.537;HaplotypeScore=13.5923;MLEAC=1;MLEAF=0.500;MQ=58.37;MQ0=0;MQRankSum=1.713;QD=9.17;ReadPosRankSum=-0.109;SB=-8.500e+02	GT:AD:DP:GQ:PL	0/1:93,93:186:99:1736,0,1399
chrX	27510	.	T	C	1385.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;DP=184;Dels=0.00;FS=0.544;HaplotypeScore=15.2393;MLEAC=1;MLEAF=0.500;MQ=58.35;MQ0=0;MQRankSum=0.385;QD=7.53;ReadPosRankSum=0.579;SB=-7.970e+02	GT:AD:DP:GQ:PL	0/1:95,89:184:99:1415,0,1741
chrX	27636	.	T	C	1227.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;DP=163;Dels=0.00;FS=1.996;HaplotypeScore=20.5819;MLEAC=1;MLEAF=0.500;MQ=56.93;MQ0=0;MQRankSum=1.176;QD=7.53;ReadPosRankSum=0.962;SB=-6.310e+02	GT:AD:DP:GQ:PL	0/1:76,85:163:99:1257,0,1071
chrX	27780	.	T	C	3628.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=198;Dels=0.00;FS=9.237;HaplotypeScore=14.2819;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.520;QD=18.32;ReadPosRankSum=2.349;SB=-1.674e+03	GT:AD:DP:GQ:PL	1/1:2,194:198:99:3628,408,0
chrX	27840	.	G	A	1126.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.962;DP=156;Dels=0.00;FS=2.027;HaplotypeScore=6.8878;MLEAC=1;MLEAF=0.500;MQ=55.50;MQ0=0;MQRankSum=-0.088;QD=7.22;ReadPosRankSum=-0.231;SB=-7.840e+02	GT:AD:DP:GQ:PL	0/1:78,77:156:99:1156,0,1043
chrX	27843	.	A	G	1009.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390;DP=160;Dels=0.00;FS=3.745;HaplotypeScore=10.0425;MLEAC=1;MLEAF=0.500;MQ=55.46;MQ0=0;MQRankSum=-1.541;QD=6.31;ReadPosRankSum=0.696;SB=-7.350e+02	GT:AD:DP:GQ:PL	0/1:82,77:160:99:1039,0,1219
chrX	27906	.	C	A	1652.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.960;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=13.5978;MLEAC=1;MLEAF=0.500;MQ=54.61;MQ0=0;MQRankSum=2.392;QD=9.95;ReadPosRankSum=-0.405;SB=-1.008e+03	GT:AD:DP:GQ:PL	0/1:61,105:166:99:1682,0,1014
chrX	27942	.	C	T	3711.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.1117;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=22.63;SB=-2.069e+03	GT:AD:DP:GQ:PL	1/1:0,163:164:99:3711,390,0
chrX	28011	.	T	C	1142.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;DP=136;Dels=0.00;FS=2.167;HaplotypeScore=13.4300;MLEAC=1;MLEAF=0.500;MQ=54.51;MQ0=0;MQRankSum=-1.499;QD=8.40;ReadPosRankSum=-1.499;SB=-6.050e+02	GT:AD:DP:GQ:PL	0/1:65,70:136:99:1172,0,1162
chrX	28032	.	T	C	1148.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700;DP=143;Dels=0.00;FS=9.046;HaplotypeScore=11.8302;MLEAC=1;MLEAF=0.500;MQ=55.49;MQ0=0;MQRankSum=3.607;QD=8.03;ReadPosRankSum=0.299;SB=-6.430e+02	GT:AD:DP:GQ:PL	0/1:72,69:143:99:1178,0,1371
chrX	28144	.	A	G	815.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;DP=115;Dels=0.00;FS=3.480;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=52.72;MQ0=0;MQRankSum=2.502;QD=7.09;ReadPosRankSum=0.821;SB=-5.900e+02	GT:AD:DP:GQ:PL	0/1:54,61:115:99:845,0,914
chrX	28147	.	G	C	1885	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=17.78;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:1918,216,0
chrX	28161	.	A	G	722.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;DP=111;Dels=0.00;FS=0.753;HaplotypeScore=4.0879;MLEAC=1;MLEAF=0.500;MQ=52.68;MQ0=0;MQRankSum=-1.652;QD=6.50;ReadPosRankSum=-0.301;SB=-2.900e+02	GT:AD:DP:GQ:PL	0/1:63,48:111:99:752,0,873
chrX	28178	.	C	T	2182	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.81;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2215,234,0
chrX	28257	.	A	C	1060.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.855;DP=139;Dels=0.00;FS=9.454;HaplotypeScore=10.3973;MLEAC=1;MLEAF=0.500;MQ=49.58;MQ0=0;MQRankSum=-1.584;QD=7.63;ReadPosRankSum=0.997;SB=-4.330e+02	GT:AD:DP:GQ:PL	0/1:69,69:139:99:1090,0,1077
chrX	28302	.	G	C	1113.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;DP=131;Dels=0.00;FS=5.901;HaplotypeScore=159.4857;MLEAC=1;MLEAF=0.500;MQ=47.51;MQ0=0;MQRankSum=3.414;QD=8.50;ReadPosRankSum=0.345;SB=-4.250e+02	GT:AD:DP:GQ:PL	0/1:57,71:131:99:1143,0,786
chrX	28314	.	G	A	759.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.411;DP=134;Dels=0.00;FS=7.238;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=47.61;MQ0=0;MQRankSum=-3.873;QD=5.66;ReadPosRankSum=0.137;SB=-4.520e+02	GT:AD:DP:GQ:PL	0/1:76,58:134:99:789,0,1196
chrX	28329	.	C	T	1011.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.693;DP=127;Dels=0.00;FS=9.102;HaplotypeScore=60.3700;MLEAC=1;MLEAF=0.500;MQ=47.34;MQ0=0;MQRankSum=4.262;QD=7.96;ReadPosRankSum=1.366;SB=-2.850e+02	GT:AD:DP:GQ:PL	0/1:60,65:127:99:1041,0,697
chrX	28380	.	C	T	2196	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=17.85;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2229,234,0
chrX	28401	.	G	A	2260	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.37;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2293,240,0
chrX	28422	.	T	C	2474	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=3.443;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;MQRankSum=0.518;QD=18.06;ReadPosRankSum=1.707;SB=-1.485e+03	GT:AD:DP:GQ:PL	1/1:1,136:137:99:2507,270,0
chrX	28461	.	A	G	481.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;DP=120;Dels=0.00;FS=12.931;HaplotypeScore=7.2989;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=0;MQRankSum=-0.532;QD=4.01;ReadPosRankSum=-0.858;SB=-1.800e+02	GT:AD:DP:GQ:PL	0/1:81,39:120:99:511,0,1516
chrX	28530	.	G	A	395.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;DP=86;Dels=0.00;FS=12.073;HaplotypeScore=15.9765;MLEAC=1;MLEAF=0.500;MQ=53.33;MQ0=0;MQRankSum=-4.169;QD=4.59;ReadPosRankSum=0.903;SB=-1.350e+02	GT:AD:DP:GQ:PL	0/1:59,27:86:99:425,0,1071
chrX	28548	.	C	T	413.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.339;DP=81;Dels=0.00;FS=44.056;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=49.99;MQ0=0;MQRankSum=-6.614;QD=5.10;ReadPosRankSum=-0.081;SB=-1.901e+01	GT:AD:DP:GQ:PL	0/1:53,27:81:99:443,0,1092
chrX	28569	.	G	A	486.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.700;DP=92;Dels=0.00;FS=45.379;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=50.00;MQ0=0;MQRankSum=-7.226;QD=5.28;ReadPosRankSum=-0.408;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,31:92:99:516,0,1132
chrX	28578	.	C	T	363.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.604;DP=102;Dels=0.00;FS=65.883;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=-7.450;QD=3.56;ReadPosRankSum=1.010;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,28:102:99:393,0,1432
chrX	28581	.	C	T	361.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;DP=102;Dels=0.00;FS=58.091;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=51.23;MQ0=0;MQRankSum=-6.922;QD=3.54;ReadPosRankSum=-0.466;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,30:102:99:391,0,1429
chrX	28593	.	T	C	202.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.693;DP=102;Dels=0.00;FS=76.600;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-6.993;QD=1.98;ReadPosRankSum=-3.419;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:77,24:102:99:232,0,1682
chrX	28596	.	G	A	175.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;DP=98;Dels=0.00;FS=74.154;HaplotypeScore=4.8621;MLEAC=1;MLEAF=0.500;MQ=53.29;MQ0=0;MQRankSum=-6.569;QD=1.79;ReadPosRankSum=-4.653;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,22:98:99:205,0,1499
chrX	28599	.	C	T	141.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DP=95;Dels=0.00;FS=72.115;HaplotypeScore=2.5508;MLEAC=1;MLEAF=0.500;MQ=53.06;MQ0=0;MQRankSum=-6.826;QD=1.48;ReadPosRankSum=-5.764;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,21:95:99:171,0,1534
chrX	28600	.	G	A	175.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.698;DP=93;Dels=0.00;FS=71.515;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-6.574;QD=1.88;ReadPosRankSum=-5.876;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,21:93:99:205,0,1502
chrX	28602	.	T	C	118.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.124;DP=93;Dels=0.00;FS=69.545;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=52.62;MQ0=0;MQRankSum=-6.832;QD=1.27;ReadPosRankSum=-6.418;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,21:93:99:148,0,1613
chrX	28606	.	A	G	157.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;DP=94;Dels=0.00;FS=65.019;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=52.71;MQ0=0;MQRankSum=-6.308;QD=1.67;ReadPosRankSum=-6.547;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,21:94:99:187,0,1625
chrX	28769	.	G	T	1884	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.98;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1917,207,0
chrX	28795	.	G	A	1945	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.01;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1978,207,0
chrX	28824	.	A	G	1743	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.00;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1776,198,0
chrX	28919	.	T	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6512;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.71;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1511,171,0
chrX	29088	.	A	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.89;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2024,210,0
chrX	29145	.	C	A	2025	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=21.09;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2058,231,0
chrX	29241	.	G	A	2651	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=22.85;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2684,285,0
chrX	29255	.	A	T	2288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=100;Dels=0.00;FS=17.937;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.606;QD=22.88;ReadPosRankSum=2.930;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:3,97:100:99:2321,246,0
chrX	29300	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.76;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1614,177,0
chrX	29329	.	G	A	1805	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=17.19;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:1838,201,0
chrX	29423	.	T	C	1805	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.75;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1838,201,0
chrX	29443	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=460.0579;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=21.35;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1741,195,0
chrX	29515	.	G	A	1709	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.64;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1742,183,0
chrX	29538	.	C	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.89;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1450,159,0
chrX	29540	.	G	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.87;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1427,159,0
chrX	29610	.	C	G	2441	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.86;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2474,276,0
chrX	29671	.	G	T	2557	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=23.46;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2590,279,0
chrX	29791	.	A	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=18.44;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1121,117,0
chrX	29815	.	G	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=20.58;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1124,120,0
chrX	29943	.	T	C	1127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=61;Dels=0.00;FS=10.150;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;MQRankSum=-0.391;QD=18.48;ReadPosRankSum=2.286;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:2,58:61:99:1160,126,0
chrX	29944	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=18.53;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1145,123,0
chrX	29957	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=20.54;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1286,135,0
chrX	30160	.	G	T	904	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=18.08;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:937,105,0
chrX	30164	.	T	G	920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=52;Dels=0.00;FS=3.082;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=-0.995;QD=17.69;ReadPosRankSum=2.305;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:2,49:52:99:953,108,0
chrX	30203	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.02;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1134,123,0
chrX	30252	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=4.929;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-1.299;QD=20.41;ReadPosRankSum=1.670;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1176,135,0
chrX	30273	.	T	C	864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;MQRankSum=-0.217;QD=18.00;ReadPosRankSum=1.660;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:897,105,0
chrX	30288	.	G	T	900	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.00;MQ0=0;QD=17.65;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:933,105,0
chrX	30291	.	C	T	954	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.87;MQ0=0;QD=18.00;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:987,111,0
chrX	30332	.	A	G	1016	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=18.47;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1049,117,0
chrX	30485	.	G	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.29;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1374,150,0
chrX	30542	.	C	T	1280	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.98;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1313,141,0
chrX	30579	.	T	G	989	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.50;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1022,114,0
chrX	30656	.	C	T	958	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.45;MQ0=0;QD=18.08;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:991,111,0
chrX	30667	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=16.30;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:913,108,0
chrX	30675	.	T	A	835	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=16.70;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:868,99,0
chrX	30689	.	G	A	750	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=13.89;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:783,87,0
chrX	30715	.	T	A	723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=3.786;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-0.031;QD=13.15;ReadPosRankSum=1.669;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:81:756,81,0
chrX	30890	.	A	T	514	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=13.18;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:57:547,57,0
chrX	30925	.	A	G	485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.559;QD=12.12;ReadPosRankSum=1.646;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:57:518,57,0
chrX	30991	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.30;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1365,150,0
chrX	31017	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.96;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1458,159,0
chrX	31151	.	C	T	2053	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.56;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2086,219,0
chrX	31175	.	T	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.81;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1719,183,0
chrX	31370	.	C	T	2268	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.25;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2301,255,0
chrX	31505	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.49;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1301,144,0
chrX	31756	.	A	G	1894	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.97;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1927,210,0
chrX	31807	.	G	A	1638	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.9126;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.84;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1671,177,0
chrX	31877	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=21.51;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1345,141,0
chrX	31887	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=20.42;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1238,135,0
chrX	31900	.	A	G	917	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;QD=16.09;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:950,105,0
chrX	31907	.	A	G	828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=55;Dels=0.00;FS=3.068;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=1.076;QD=15.05;ReadPosRankSum=2.359;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:2,52:55:96:861,96,0
chrX	31961	.	C	T	719	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=13.31;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:81:752,81,0
chrX	31966	.	T	C	723	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=12.91;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:756,84,0
chrX	31975	.	T	C	769	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=13.26;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:87:802,87,0
chrX	32004	.	G	A	682	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3051;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=11.37;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:81:715,81,0
chrX	32051	.	T	C	927	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=17.17;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:960,108,0
chrX	32072	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.64;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1056,120,0
chrX	32105	.	G	A	1038	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=14.03;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1071,117,0
chrX	32111	.	C	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=13.82;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1125,126,0
chrX	32787	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.215;QD=21.85;ReadPosRankSum=1.681;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1519,165,0
chrX	32964	.	A	G	1947	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.74;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1980,216,0
chrX	33178	.	A	G	679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.181;QD=15.43;ReadPosRankSum=1.654;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:81:712,81,0
chrX	33295	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.15;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1464,165,0
chrX	33480	.	T	C	1891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.877;QD=24.56;ReadPosRankSum=1.687;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1924,207,0
chrX	33525	.	C	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.54;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1408,156,0
chrX	33710	.	A	T	2967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-1.195;QD=23.00;ReadPosRankSum=1.705;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:3000,321,0
chrX	33800	.	A	G	2085	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.42;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2118,228,0
chrX	33847	.	T	G	1683	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.05;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1716,183,0
chrX	34012	.	A	G	931	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=16.93;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:964,108,0
chrX	34093	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.23;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1456,153,0
chrX	34147	.	A	G	1646	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6781;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.51;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1679,186,0
chrX	34438	.	G	A	1010	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.04;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1043,114,0
chrX	34465	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.43;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1194,129,0
chrX	34681	.	G	A	2306	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.39;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2339,258,0
chrX	34837	.	T	C	1337	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.28;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1370,150,0
chrX	34918	.	G	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.66;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1624,168,0
chrX	34935	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.07;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1666,189,0
chrX	35035	.	A	T	2550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=116;Dels=0.00;FS=3.795;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.467;QD=21.98;ReadPosRankSum=1.672;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2583,282,0
chrX	35563	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.97;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1480,162,0
chrX	35623	.	A	C	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;MQRankSum=-1.070;QD=17.13;ReadPosRankSum=1.681;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1198,132,0
chrX	35632	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=17.86;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1176,129,0
chrX	35651	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.105;QD=17.17;ReadPosRankSum=1.365;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1166,123,0
chrX	35680	.	A	G	999	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=15.61;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1032,114,0
chrX	35704	.	T	C	1073	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=16.51;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1106,126,0
chrX	35752	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.374;QD=19.07;ReadPosRankSum=1.493;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1177,126,0
chrX	35812	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.89;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1601,165,0
chrX	35830	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.77;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1597,177,0
chrX	35923	.	C	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.0271;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.33;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1641,180,0
chrX	36034	.	A	G	1096	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=16.86;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1129,126,0
chrX	36050	.	G	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.24;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1121,117,0
chrX	36127	.	G	A	612	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=13.30;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:69:645,69,0
chrX	36139	.	A	C	613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.341;QD=14.60;ReadPosRankSum=2.265;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:2,38:42:69:646,69,0
chrX	36217	.	C	T	1264	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.32;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1297,144,0
chrX	36357	.	A	G	776	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.0307;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=16.87;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:809,93,0
chrX	36391	.	G	A	221.01	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=24.8722;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=4.33;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:27:254,27,0
chrX	36583	.	A	G	2139	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.39;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2172,240,0
chrX	36794	.	C	T	2606	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.05;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2639,279,0
chrX	36818	.	C	G	2565	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=16.55;SB=-1.573e+03	GT:AD:DP:GQ:PL	1/1:0,152:155:99:2598,288,0
chrX	36820	.	G	A	2465	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.4053;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=16.22;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:2498,276,0
chrX	37127	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.8322;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.61;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1442,159,0
chrX	48799	.	G	A	2052	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.32;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2085,222,0
chrX	53842	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.012;QD=24.32;ReadPosRankSum=1.687;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1906,207,0
chrX	54825	.	G	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.41;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1531,162,0
chrX	54948	.	G	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.19;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1123,120,0
chrX	54960	.	A	G	1124	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.21;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1157,129,0
chrX	54990	.	G	A	1050	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.59;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1083,114,0
chrX	55276	.	A	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.63;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1753,183,0
chrX	55335	.	C	T	2049	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.52;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2082,219,0
chrX	55616	.	C	T	1084	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.77;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1117,117,0
chrX	55739	.	A	G	1918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=3.424;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.662;QD=19.37;ReadPosRankSum=1.697;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1951,222,0
chrX	56022	.	G	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.37;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1583,168,0
chrX	56320	.	G	A	589	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=14.02;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:42:66:622,66,0
chrX	56611	.	T	C	759	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:87:792,87,0
chrX	56789	.	A	G	1193	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.69;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1226,141,0
chrX	56999	.	G	A	1168	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.84;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1201,129,0
chrX	57032	.	T	C	1378	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.52;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1411,156,0
chrX	57144	.	T	C	944	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.98;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:977,105,0
chrX	57448	.	T	C	1042	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=2.982;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.607;QD=17.66;ReadPosRankSum=2.367;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1075,117,0
chrX	57612	.	T	C	1244	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.82;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1277,138,0
chrX	57734	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.81;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1331,150,0
chrX	57849	.	T	A	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.653;QD=22.15;ReadPosRankSum=1.619;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1384,147,0
chrX	57860	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.80;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1241,141,0
chrX	58040	.	A	G	659	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=15.33;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:78:692,78,0
chrX	58129	.	C	T	730	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=16.98;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:763,84,0
chrX	58196	.	A	G	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-1.118;QD=18.48;ReadPosRankSum=0.447;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1179,132,0
chrX	58202	.	C	A	1200	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=19.35;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1233,132,0
chrX	58387	.	T	C	1048	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.83;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1081,120,0
chrX	58487	.	G	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.49;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1172,138,0
chrX	58706	.	T	C	911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=4.416;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.479;QD=19.38;ReadPosRankSum=1.659;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:944,105,0
chrX	58993	.	A	G	953	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=8.857;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.996;QD=19.45;ReadPosRankSum=2.350;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:99:986,108,0
chrX	59006	.	T	A	919	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.15;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:952,99,0
chrX	59187	.	T	C	1597	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.18;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1630,183,0
chrX	59202	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.83;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1322,147,0
chrX	59955	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=5.119;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=1.066;QD=15.62;ReadPosRankSum=1.599;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1251,141,0
chrX	59991	.	C	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=16.36;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1391,150,0
chrX	60255	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.20;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1920,213,0
chrX	60279	.	A	G	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=4.658;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=0.501;QD=19.15;ReadPosRankSum=1.687;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1527,174,0
chrX	60281	.	C	T	1398	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=16.84;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1431,162,0
chrX	60675	.	T	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=19.3521;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.81;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1350,144,0
chrX	60842	.	T	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.38;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1052,111,0
chrX	60979	.	T	A	2038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.047;QD=23.70;ReadPosRankSum=0.765;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2071,204,0
chrX	61449	.	A	G	1581	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.60;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1614,174,0
chrX	61680	.	C	T	1352	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.80;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1385,144,0
chrX	61713	.	G	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.61;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1322,141,0
chrX	61761	.	G	A	745	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.01;MQ0=0;QD=15.85;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:778,87,0
chrX	61785	.	A	G	543	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;QD=13.92;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:63:576,63,0
chrX	61788	.	C	G	537	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=13.42;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:63:570,63,0
chrX	61803	.	C	T	481	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=12.33;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:57:514,57,0
chrX	61814	.	G	A	498	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.71;MQ0=0;QD=13.11;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:57:531,57,0
chrX	61827	.	C	T	497	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=13.08;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:57:530,57,0
chrX	61926	.	T	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.18;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1346,144,0
chrX	62016	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=21.94;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1196,129,0
chrX	62046	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=18.27;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1239,135,0
chrX	62065	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=18.10;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1354,150,0
chrX	62571	.	A	G	1501	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.07;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1534,174,0
chrX	62857	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=3.040;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.132;QD=17.83;ReadPosRankSum=2.393;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1566,174,0
chrX	63405	.	T	C	2535	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.5849;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.78;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2568,279,0
chrX	63597	.	C	T	3632.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.8480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.503;QD=23.43;ReadPosRankSum=0.503;SB=-1.972e+03	GT:AD:DP:GQ:PL	1/1:1,154:155:99:3632,384,0
chrX	64093	.	A	C	1618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.686;QD=21.57;ReadPosRankSum=1.547;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1651,183,0
chrX	64368	.	A	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.42;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1197,129,0
chrX	64516	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.834;QD=17.93;ReadPosRankSum=1.668;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1037,114,0
chrX	65469	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1366,144,0
chrX	65790	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=6.273;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.058;QD=21.07;ReadPosRankSum=2.394;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1887,207,0
chrX	65971	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.89;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2101,228,0
chrX	66392	.	A	T	2150	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=0.921;QD=21.72;ReadPosRankSum=1.695;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2183,231,0
chrX	66411	.	A	G	2182	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.73;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2215,243,0
chrX	66591	.	C	T	1077	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.44;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1110,117,0
chrX	67353	.	G	A	1474	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.68;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1507,159,0
chrX	67457	.	A	G	1408	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.71;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1441,156,0
chrX	67631	.	C	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.53;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1993,216,0
chrX	67660	.	T	C	1936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=2.689;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.266;QD=22.00;ReadPosRankSum=2.394;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1969,216,0
chrX	67686	.	G	A	2303	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.36;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2336,246,0
chrX	67836	.	A	T	2170	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=26.14;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2203,234,0
chrX	68090	.	T	C	2896	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.28;SB=-1.611e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2929,315,0
chrX	69580	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.38;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1488,162,0
chrX	69760	.	G	A	1149	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.47;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1182,132,0
chrX	69814	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.77;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1056,120,0
chrX	70682	.	A	G	1167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=4.232;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.098;QD=22.02;ReadPosRankSum=1.667;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1200,132,0
chrX	71064	.	A	G	1190	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.51;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1223,132,0
chrX	71090	.	A	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=25.57;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1516,159,0
chrX	71179	.	G	A	1259	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.98;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1292,138,0
chrX	71182	.	G	A	1238	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.76;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1271,141,0
chrX	71273	.	G	A	836	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=42.6951;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;MQRankSum=0.767;QD=13.70;ReadPosRankSum=1.619;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:93:869,93,0
chrX	71395	.	G	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.45;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1234,129,0
chrX	71410	.	A	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.18;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1304,144,0
chrX	71449	.	G	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.05;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1422,156,0
chrX	71623	.	C	A	1490	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.61;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1523,159,0
chrX	71637	.	G	A	1719	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.22;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1752,186,0
chrX	71711	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.76;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1199,129,0
chrX	71728	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.96;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1102,114,0
chrX	71767	.	T	C	893	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.892;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.389;QD=18.22;ReadPosRankSum=1.662;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:926,99,0
chrX	71803	.	G	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.57;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,55:58:99:1052,111,0
chrX	73345	.	T	C	876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.222;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.568;QD=20.86;ReadPosRankSum=1.568;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:909,99,0
chrX	73368	.	G	A	840	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.11;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,36:38:90:873,90,0
chrX	73391	.	T	C	998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=47;Dels=0.00;FS=3.310;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.270;QD=21.23;ReadPosRankSum=1.655;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,44:47:99:1031,114,0
chrX	73745	.	G	A	2214	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.88;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2247,237,0
chrX	74038	.	G	A	2255	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.78;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2288,240,0
chrX	74077	.	T	C	2898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=141;Dels=0.00;FS=7.257;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;MQRankSum=-1.378;QD=20.55;ReadPosRankSum=2.415;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:2,138:141:99:2931,324,0
chrX	74509	.	T	G	1706	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=15.80;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1739,198,0
chrX	74530	.	G	A	2132	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=17.19;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2165,228,0
chrX	74857	.	T	G	3060	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.029;QD=23.91;ReadPosRankSum=2.313;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:2,125:128:99:3093,348,0
chrX	74905	.	G	A	2325	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.55;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2358,246,0
chrX	75066	.	G	A	2104	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.83;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2137,231,0
chrX	75075	.	G	A	2097	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.76;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2130,225,0
chrX	75337	.	A	T	1898	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=21.57;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1931,204,0
chrX	75340	.	C	T	1835	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.85;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1868,195,0
chrX	75366	.	C	G	2457	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.94;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2490,279,0
chrX	75431	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=20.91;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1852,204,0
chrX	75451	.	C	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=15.04;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1206,132,0
chrX	75467	.	A	G	960	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=15.24;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:993,111,0
chrX	75492	.	C	G	707	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=12.19;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:84:740,84,0
chrX	75559	.	T	G	1730	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.01;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1763,192,0
chrX	75669	.	C	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.80;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1777,189,0
chrX	75672	.	G	A	1648	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.86;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1681,180,0
chrX	75699	.	G	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=16.48;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1121,129,0
chrX	75718	.	C	T	681	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=11.95;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:78:714,78,0
chrX	76073	.	A	G	1810	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.766;DP=89;Dels=0.01;FS=22.204;HaplotypeScore=21.0436;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=1.399;QD=20.34;ReadPosRankSum=4.064;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:6,82:88:99:1843,198,0
chrX	76115	.	G	A	1763	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1796,189,0
chrX	76206	.	G	A	2164	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.61;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2197,237,0
chrX	76486	.	A	G	1370	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.224;QD=18.27;ReadPosRankSum=1.686;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1403,156,0
chrX	76676	.	T	C	415	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.124;QD=14.82;ReadPosRankSum=1.609;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:1,27:28:51:448,51,0
chrX	76677	.	T	C	431	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.494;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.418;QD=14.86;ReadPosRankSum=1.494;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:1,28:29:51:464,51,0
chrX	76744	.	C	G	735	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=16.70;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:81:768,81,0
chrX	76747	.	A	G	661	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.69;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:81:694,81,0
chrX	76767	.	A	G	674	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=14.04;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:48:78:707,78,0
chrX	77140	.	T	G	2505	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.59;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2538,276,0
chrX	77184	.	A	G	1503	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=1.592;QD=15.18;ReadPosRankSum=1.697;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1536,174,0
chrX	77203	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.9385;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=15.09;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1361,150,0
chrX	77355	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.7947;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.57;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1474,159,0
chrX	78090	.	G	A	1036	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=16.19;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1069,117,0
chrX	78123	.	A	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.6991;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=16.88;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,95:98:99:1687,186,0
chrX	78150	.	G	T	1493	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.16;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1526,168,0
chrX	78207	.	C	T	1053	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=14.42;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1086,117,0
chrX	78215	.	T	G	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5022;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=0.866;QD=17.69;ReadPosRankSum=1.172;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,67:70:99:1271,114,0
chrX	78258	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.80;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1340,141,0
chrX	78406	.	G	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.97;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1329,147,0
chrX	78882	.	A	G	1096	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.90;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1129,126,0
chrX	79092	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.38;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1393,153,0
chrX	79391	.	A	G	1108	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.91;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1141,123,0
chrX	79812	.	G	A	1263	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.70;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1296,135,0
chrX	80055	.	T	A	981	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.52;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1014,108,0
chrX	80077	.	T	G	1049	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.73;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1082,120,0
chrX	80088	.	T	G	1098	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=18.61;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1131,123,0
chrX	80094	.	A	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.14;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1085,114,0
chrX	80208	.	A	G	1581	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.08;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1614,180,0
chrX	80313	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.58;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1371,153,0
chrX	80433	.	C	T	1154	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.75;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1187,126,0
chrX	80439	.	T	C	1089	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9761;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.02;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1122,126,0
chrX	80604	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.19;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1559,168,0
chrX	80664	.	G	A	1267	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.23;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1300,138,0
chrX	80742	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.39;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1552,162,0
chrX	80859	.	T	C	1750	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.34;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1783,195,0
chrX	81028	.	A	G	1194	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.59;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1227,138,0
chrX	81162	.	T	C	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.892;QD=20.50;ReadPosRankSum=1.680;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1386,156,0
chrX	81383	.	C	T	1292	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.46;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1325,141,0
chrX	81387	.	C	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.60;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1265,135,0
chrX	82254	.	C	A	1374	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.82;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1407,150,0
chrX	83621	.	G	A	1609	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.66;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1642,174,0
chrX	83690	.	T	A	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=80;Dels=0.00;FS=4.063;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.811;QD=16.92;ReadPosRankSum=1.513;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1387,153,0
chrX	83747	.	A	T	2093	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.36;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2126,228,0
chrX	83804	.	C	T	3001	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.59;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3034,318,0
chrX	83886	.	A	G	67.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DP=155;Dels=0.01;FS=0.000;HaplotypeScore=147.3063;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=-0.813;QD=0.44;ReadPosRankSum=3.200;SB=-2.626e+01	GT:AD:DP:GQ:PL	1/1:6,10:154:12:100,12,0
chrX	83937	.	T	A	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=118;Dels=0.03;FS=0.000;HaplotypeScore=23.1510;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.702;QD=15.35;ReadPosRankSum=1.641;SB=-1.458e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:1844,192,0
chrX	85219	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.90;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:928,105,0
chrX	85459	.	A	G	1561	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.82;MQ0=0;QD=23.65;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1594,183,0
chrX	86085	.	C	T	1429	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.43;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1462,153,0
chrX	86328	.	A	T	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=94;Dels=0.00;FS=4.724;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.619;QD=22.73;ReadPosRankSum=0.188;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2170,228,0
chrX	86351	.	G	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.32;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1551,162,0
chrX	86417	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.56;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1423,150,0
chrX	86567	.	G	A	2164	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.08;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2197,237,0
chrX	86690	.	C	T	2138	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.76;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2171,234,0
chrX	86865	.	C	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.94;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:49:99:1108,117,0
chrX	87115	.	G	A	1880	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.25;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1913,210,0
chrX	87124	.	T	C	2046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.719;DP=106;Dels=0.00;FS=2.576;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.107;QD=19.30;ReadPosRankSum=2.874;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:3,101:106:99:2079,228,0
chrX	87216	.	C	A	2997	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.98;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3030,321,0
chrX	87469	.	A	G	2410	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.98;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2443,270,0
chrX	87516	.	T	G	3984.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;DP=190;Dels=0.00;FS=5.033;HaplotypeScore=11.8106;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.161;QD=20.97;ReadPosRankSum=1.714;SB=-1.567e+03	GT:AD:DP:GQ:PL	1/1:1,187:190:99:3984,441,0
chrX	87878	.	T	C	1923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.554;QD=19.62;ReadPosRankSum=1.696;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:1956,213,0
chrX	88033	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.8486;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.41;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1767,195,0
chrX	88546	.	T	C	915	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:948,105,0
chrX	88714	.	T	C	3367.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=23.38;SB=-1.835e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3367,384,0
chrX	89050	.	G	A	2436	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.20;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2469,258,0
chrX	89089	.	C	A	2177	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7316;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.92;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2210,231,0
chrX	89346	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.89;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1193,129,0
chrX	89645	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=59;Dels=0.00;FS=6.558;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.733;QD=19.56;ReadPosRankSum=2.367;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1187,132,0
chrX	89714	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.79;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1471,156,0
chrX	89753	.	C	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1479,162,0
chrX	89888	.	T	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.34;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1550,165,0
chrX	89907	.	T	G	1247	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.11;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1280,141,0
chrX	89948	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.34;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1225,138,0
chrX	90035	.	G	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.34;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1356,150,0
chrX	90197	.	G	C	1521	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.14;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1554,171,0
chrX	90308	.	C	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=19.86;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1582,174,0
chrX	90410	.	G	C	1372	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.49;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1405,153,0
chrX	90432	.	T	A	830	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=16.94;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:863,93,0
chrX	90441	.	C	T	701	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=15.58;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:734,78,0
chrX	90473	.	C	T	623	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=14.83;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:72:656,72,0
chrX	90680	.	T	G	1904	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.79;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:1937,207,0
chrX	90682	.	G	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.38;SB=-1.410e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1858,195,0
chrX	90815	.	C	T	2047	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4398;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=23.26;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2080,222,0
chrX	90875	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.64;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1844,189,0
chrX	90959	.	C	T	1800	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=20.69;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1833,192,0
chrX	91114	.	A	G	2450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=123;Dels=0.00;FS=2.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-0.385;QD=19.92;ReadPosRankSum=2.894;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:3,120:123:99:2483,276,0
chrX	91152	.	C	T	1745	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=16.16;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1778,195,0
chrX	91153	.	G	A	1740	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=16.26;SB=-1.398e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1773,195,0
chrX	91264	.	A	G	3043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.074;QD=21.74;ReadPosRankSum=1.658;SB=-1.368e+03	GT:AD:DP:GQ:PL	1/1:1,139:140:99:3076,336,0
chrX	91321	.	G	A	3758.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=22.11;SB=-2.222e+03	GT:AD:DP:GQ:PL	1/1:0,169:170:99:3758,391,0
chrX	91326	.	G	C	3614.01	PASS	AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=3.2842;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.77;SB=-2.162e+03	GT:AD:DP:GQ:PL	1/1:0,174:174:99:3614,393,0
chrX	91365	.	A	C	2699	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.76;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2732,303,0
chrX	91730	.	G	A	2072	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.67;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2105,222,0
chrX	91817	.	A	T	1610	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=8.9501;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.68;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1643,174,0
chrX	91899	.	A	G	2010	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=26.10;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2043,222,0
chrX	92268	.	T	A	1395	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.1755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.88;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1428,153,0
chrX	92401	.	T	C	844	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=3.112;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.087;QD=19.63;ReadPosRankSum=2.336;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:2,41:43:96:877,96,0
chrX	92451	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=0.687;QD=21.63;ReadPosRankSum=1.677;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1396,150,0
chrX	92479	.	G	A	1923	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.13;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1956,207,0
chrX	92512	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.53;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1791,198,0
chrX	92630	.	G	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.95;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1590,174,0
chrX	92872	.	A	T	1913	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.35;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1946,219,0
chrX	92922	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.513;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.513;QD=17.05;ReadPosRankSum=1.601;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1380,153,0
chrX	93007	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.38;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1555,165,0
chrX	93102	.	C	T	2258	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.97;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2291,249,0
chrX	93121	.	G	T	2242	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3609;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.33;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2275,243,0
chrX	93388	.	C	T	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.395;QD=22.72;ReadPosRankSum=0.152;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1328,147,0
chrX	93569	.	G	A	2472	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.32;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,102:106:99:2505,261,0
chrX	93656	.	A	G	1672	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=5.740;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.178;QD=22.29;ReadPosRankSum=1.686;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1705,189,0
chrX	94327	.	A	G	1762	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.80;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,96:99:99:1795,204,0
chrX	94776	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.48;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2312,252,0
chrX	96194	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.12;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:65:99:1601,168,0
chrX	96721	.	C	T	895	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=14.21;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:928,102,0
chrX	96742	.	G	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=15.64;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1175,123,0
chrX	96768	.	T	C	815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=7.924;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.615;QD=13.15;ReadPosRankSum=1.676;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:93:848,93,0
chrX	96890	.	G	T	1969	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=24.01;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2002,210,0
chrX	96902	.	A	G	1894	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=22.02;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1927,222,0
chrX	96931	.	T	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.49;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1050,117,0
chrX	97014	.	C	A	965	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=15.56;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:998,111,0
chrX	97020	.	G	T	933	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=13.93;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:966,105,0
chrX	97036	.	G	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=14.43;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1130,117,0
chrX	97063	.	C	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=14.58;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1272,132,0
chrX	97085	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=13.52;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1115,126,0
chrX	97211	.	C	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.35;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1661,186,0
chrX	97221	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.898;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-1.683;QD=21.29;ReadPosRankSum=1.683;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1523,168,0
chrX	97478	.	G	A	1249	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.03;FS=0.000;HaplotypeScore=18.0606;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=18.92;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1282,144,0
chrX	98069	.	C	T	1364	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.998;DP=72;Dels=0.00;FS=2.824;HaplotypeScore=6.1340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.017;QD=18.94;ReadPosRankSum=2.381;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1397,134,0
chrX	98106	.	C	T	1856	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.40;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1889,201,0
chrX	98504	.	A	C	1973	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.79;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2006,222,0
chrX	99116	.	G	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.48;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1427,156,0
chrX	99372	.	T	C	600	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=14.63;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:69:633,69,0
chrX	99941	.	A	G	2453	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.71;SB=-1.420e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2486,276,0
chrX	99962	.	G	A	2585	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.2019;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=21.02;SB=-1.441e+03	GT:AD:DP:GQ:PL	1/1:0,121:123:99:2618,279,0
chrX	100064	.	A	G	2152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.833;QD=20.69;ReadPosRankSum=1.699;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2185,234,0
chrX	100283	.	C	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=15.4030;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.82;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1907,201,0
chrX	100640	.	C	T	1241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.824;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.0558;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.164;QD=18.80;ReadPosRankSum=-0.369;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,63:66:99:1274,118,0
chrX	100886	.	C	T	1666	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.09;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1699,180,0
chrX	101073	.	T	C	700	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=13.73;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:84:733,84,0
chrX	101089	.	A	T	764	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=14.69;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:797,84,0
chrX	101179	.	C	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=21.71;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1314,138,0
chrX	101201	.	G	A	962	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.24;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:995,105,0
chrX	101279	.	G	A	897	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.69;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:930,99,0
chrX	101347	.	C	T	646	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.58;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:72:679,72,0
chrX	101383	.	C	A	663	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=15.07;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:696,81,0
chrX	101475	.	G	A	866	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.3640;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=16.98;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:899,96,0
chrX	101483	.	A	T	923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.786;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-0.598;QD=16.78;ReadPosRankSum=1.669;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:956,102,0
chrX	101508	.	C	G	789	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.17;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:93:822,93,0
chrX	101530	.	A	G	864	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=15.16;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:897,99,0
chrX	101545	.	A	G	974	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=15.97;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1007,111,0
chrX	101646	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.10;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1078,117,0
chrX	101787	.	G	A	2189	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.11;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2222,243,0
chrX	101827	.	C	T	2272	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.04;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2305,249,0
chrX	101845	.	A	G	1624	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.65;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1657,186,0
chrX	101870	.	G	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.4001;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.11;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1483,165,0
chrX	102058	.	G	T	2580	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.68;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2613,282,0
chrX	102081	.	T	C	2963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=145;Dels=0.00;FS=7.420;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.331;QD=20.43;ReadPosRankSum=2.348;SB=-1.509e+03	GT:AD:DP:GQ:PL	1/1:2,143:145:99:2996,330,0
chrX	102326	.	G	A	1996	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.7279;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.48;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2029,219,0
chrX	102341	.	T	C	2032	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.64;SB=-1.409e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2065,225,0
chrX	102363	.	C	T	1630	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.30;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1663,174,0
chrX	102407	.	A	G	1682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=2.969;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-2.206;QD=18.48;ReadPosRankSum=2.396;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1715,189,0
chrX	102455	.	A	G	1412	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=2.846;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.049;QD=18.83;ReadPosRankSum=2.384;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1445,159,0
chrX	102489	.	T	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.71;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1196,132,0
chrX	102557	.	C	T	1008	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.45;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1041,111,0
chrX	102662	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.506;QD=18.75;ReadPosRankSum=1.679;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1252,138,0
chrX	102761	.	T	G	1166	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.82;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1199,129,0
chrX	103478	.	T	C	1869	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9429;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.24;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1902,204,0
chrX	103601	.	A	G	1115	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.27;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1148,126,0
chrX	103652	.	G	T	1302	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.00;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1335,147,0
chrX	104030	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.37;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1227,129,0
chrX	104033	.	A	G	1081	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.16;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1114,126,0
chrX	104669	.	G	A	1854	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.89;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1887,198,0
chrX	105490	.	G	A	2114	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2897;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.75;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2147,225,0
chrX	105643	.	C	T	1356	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.10;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1389,153,0
chrX	105664	.	G	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.69;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1360,144,0
chrX	105718	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.03;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1852,195,0
chrX	105829	.	G	A	2529	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.2195;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.58;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2562,282,0
chrX	106245	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.7006;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.650;QD=21.55;ReadPosRankSum=1.568;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:938,105,0
chrX	106326	.	G	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.62;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1114,120,0
chrX	106729	.	A	G	2133	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.70;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2166,246,0
chrX	106893	.	T	C	3030	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.13;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3063,333,0
chrX	106919	.	T	G	2332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8180;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.518;QD=24.04;ReadPosRankSum=1.696;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2365,258,0
chrX	107092	.	A	G	2610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.6265;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.237;QD=18.78;ReadPosRankSum=1.682;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:1,138:139:99:2643,297,0
chrX	107239	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1758,186,0
chrX	107485	.	C	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.64;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1595,168,0
chrX	107994	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.87;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1431,159,0
chrX	108067	.	G	A	1096	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=17.97;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1129,123,0
chrX	108091	.	A	G	837	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.10;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:96:870,96,0
chrX	108123	.	T	G	1086	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=16.97;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1119,120,0
chrX	108143	.	A	G	1050	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.472;QD=15.91;ReadPosRankSum=1.680;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1083,120,0
chrX	108151	.	A	G	1099	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=16.40;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1132,123,0
chrX	108247	.	C	T	1783	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.81;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1816,192,0
chrX	108259	.	C	T	1721	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.78;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1754,183,0
chrX	108616	.	C	T	1623	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.93;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1656,174,0
chrX	108688	.	A	G	1734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-1.352;QD=20.64;ReadPosRankSum=0.845;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,81:84:99:1767,195,0
chrX	108712	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.33;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1664,180,0
chrX	108722	.	C	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.20;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1744,186,0
chrX	108784	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=18.15;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1394,153,0
chrX	108954	.	G	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.88;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1226,132,0
chrX	110224	.	C	T	997	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.405;QD=21.21;ReadPosRankSum=1.659;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:95:1030,95,0
chrX	110925	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.95;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1311,141,0
chrX	111089	.	T	G	895	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=16.89;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:928,105,0
chrX	111628	.	A	G	1988	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.09;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2021,231,0
chrX	111968	.	G	A	2036	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.96;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2069,216,0
chrX	112239	.	A	G	1730	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.35;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1763,195,0
chrX	112473	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.10;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1504,165,0
chrX	112715	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.42;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1961,210,0
chrX	112791	.	T	C	1664	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.35;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1697,189,0
chrX	112938	.	T	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=13.23;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1250,132,0
chrX	112947	.	G	A	1059	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=11.39;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1092,120,0
chrX	112965	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=0.339;QD=13.99;ReadPosRankSum=1.657;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1320,147,0
chrX	112991	.	T	C	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.032;QD=15.65;ReadPosRankSum=1.695;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:1,94:98:99:1567,168,0
chrX	113505	.	G	A	589	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=14.37;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:69:622,69,0
chrX	113865	.	G	C	1005	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;QD=22.33;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1038,114,0
chrX	113871	.	C	G	904	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=18.45;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:937,102,0
chrX	113876	.	G	A	910	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=17.84;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:943,102,0
chrX	113899	.	T	C	862	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=17.96;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:895,99,0
chrX	113977	.	T	C	1337	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.22;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1370,150,0
chrX	113986	.	T	C	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.0883;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.212;QD=19.69;ReadPosRankSum=2.373;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1293,141,0
chrX	114211	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.69;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1116,120,0
chrX	114214	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.81;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1103,123,0
chrX	114298	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=-0.841;QD=18.27;ReadPosRankSum=1.584;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1312,144,0
chrX	114582	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.20;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1365,147,0
chrX	114631	.	C	T	1422	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.88;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1455,153,0
chrX	114825	.	T	C	811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.030;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.1118;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;MQRankSum=-0.152;QD=13.75;ReadPosRankSum=0.881;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,56:59:73:844,73,0
chrX	114831	.	T	G	832	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.31;MQ0=0;QD=14.34;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:96:865,96,0
chrX	114874	.	T	C	646	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=11.75;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:75:679,75,0
chrX	114907	.	T	C	101.26	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=1.88;SB=-6.003e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:15:134,15,0
chrX	115225	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=22.20;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1720,183,0
chrX	115252	.	G	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=20.98;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1795,189,0
chrX	115680	.	G	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.33;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1436,159,0
chrX	115717	.	C	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.77;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1476,153,0
chrX	115900	.	T	C	2926	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.00;SB=-1.567e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2959,321,0
chrX	115913	.	C	T	2842	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.9810;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.53;SB=-1.420e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2875,303,0
chrX	116143	.	T	C	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=3.274;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=0.387;QD=22.14;ReadPosRankSum=1.651;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1915,210,0
chrX	116288	.	C	T	1702	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.10;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1735,183,0
chrX	116526	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=4.357;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.694;QD=19.29;ReadPosRankSum=1.694;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1769,195,0
chrX	116888	.	A	G	2069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.458;QD=19.89;ReadPosRankSum=1.698;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:2,100:104:99:2102,231,0
chrX	116986	.	C	T	2040	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.42;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2073,213,0
chrX	117040	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.23;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1278,135,0
chrX	117184	.	G	C	2290	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2323,252,0
chrX	117715	.	C	T	774	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:807,84,0
chrX	117792	.	G	A	850	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.48;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:883,93,0
chrX	118010	.	G	A	1214	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.78;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1247,132,0
chrX	118430	.	T	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.88;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1718,186,0
chrX	118772	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.23;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1455,159,0
chrX	118832	.	G	A	1688	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.10;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1721,180,0
chrX	118865	.	T	C	1867	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.6686;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.71;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1900,204,0
chrX	118892	.	T	C	1817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=10.859;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.516;QD=19.33;ReadPosRankSum=2.211;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1850,201,0
chrX	118904	.	G	T	1809	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=16.60;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1842,201,0
chrX	118943	.	G	A	2266	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.88;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2299,249,0
chrX	119064	.	G	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1676,177,0
chrX	119720	.	A	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.60;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1353,150,0
chrX	120106	.	A	T	2319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.625;DP=105;Dels=0.00;FS=11.816;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.818;QD=22.09;ReadPosRankSum=2.818;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:3,102:105:99:2352,255,0
chrX	120196	.	G	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.27;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1452,156,0
chrX	120352	.	A	G	1910	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.11;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1943,213,0
chrX	120394	.	T	C	2478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=128;Dels=0.00;FS=6.265;HaplotypeScore=11.6804;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=-0.900;QD=19.36;ReadPosRankSum=2.411;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:2,125:128:99:2511,279,0
chrX	120754	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;QD=13.36;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1142,120,0
chrX	120770	.	A	G	983	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=12.60;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1016,111,0
chrX	120772	.	C	T	980	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=12.41;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1013,108,0
chrX	120814	.	T	C	210.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908;DP=120;Dels=0.00;FS=10.650;HaplotypeScore=7.8321;MLEAC=1;MLEAF=0.500;MQ=42.60;MQ0=0;MQRankSum=0.506;QD=1.75;ReadPosRankSum=0.769;SB=-3.240e+02	GT:AD:DP:GQ:PL	0/1:82,36:120:99:240,0,1063
chrX	120829	.	T	C	170.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110;DP=117;Dels=0.00;FS=8.105;HaplotypeScore=6.0809;MLEAC=1;MLEAF=0.500;MQ=44.03;MQ0=0;MQRankSum=-2.577;QD=1.45;ReadPosRankSum=2.703;SB=-2.680e+02	GT:AD:DP:GQ:PL	0/1:79,37:117:99:200,0,1019
chrX	120868	.	C	T	571.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;DP=83;Dels=0.00;FS=2.930;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=42.49;MQ0=0;MQRankSum=-1.208;QD=6.88;ReadPosRankSum=1.746;SB=-4.720e+02	GT:AD:DP:GQ:PL	0/1:34,49:83:99:601,0,374
chrX	120874	.	C	T	1206	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=14.36;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1239,132,0
chrX	120877	.	T	C	1050	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=13.29;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1083,120,0
chrX	120887	.	A	G	876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=75;Dels=0.00;FS=3.030;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;MQRankSum=1.098;QD=11.68;ReadPosRankSum=2.382;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:2,71:75:99:909,102,0
chrX	120895	.	T	C	323.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DP=60;Dels=0.00;FS=2.177;HaplotypeScore=3.3130;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=0;MQRankSum=0.660;QD=5.38;ReadPosRankSum=2.269;SB=-3.130e+02	GT:AD:DP:GQ:PL	0/1:29,31:60:99:353,0,233
chrX	121264	.	C	T	1379	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.0003;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.89;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1412,150,0
chrX	121384	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=16.99;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1222,141,0
chrX	121516	.	T	C	986	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=15.41;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1019,111,0
chrX	121522	.	C	T	919	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=13.72;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:952,105,0
chrX	122064	.	C	G	1397	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1430,159,0
chrX	123314	.	C	G	588	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.82;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:621,72,0
chrX	123378	.	A	G	663	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=16.57;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:75:696,75,0
chrX	123380	.	C	T	607	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=14.45;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:72:640,72,0
chrX	123421	.	A	G	993	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=18.05;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1026,114,0
chrX	123440	.	G	T	774	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=14.07;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:87:807,87,0
chrX	123477	.	A	G	847	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=14.60;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:96:880,96,0
chrX	123508	.	C	T	474	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=11.02;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:57:507,57,0
chrX	123510	.	G	A	499	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=31.8948;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.17;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:57:532,57,0
chrX	123517	.	G	C	482	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=34.7943;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.76;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:57:515,57,0
chrX	123546	.	C	T	607	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=29.9618;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=15.56;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:640,69,0
chrX	123564	.	A	C	571	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=13.60;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:66:604,66,0
chrX	123590	.	G	A	897	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.31;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:930,99,0
chrX	123734	.	G	T	2103	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.37;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2136,228,0
chrX	123777	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.392;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=37.5043;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=1.392;QD=18.24;ReadPosRankSum=-1.108;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:4,62:66:99:1237,135,0
chrX	123832	.	A	G	737	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=20.47;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:770,81,0
chrX	123919	.	G	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.03;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1438,150,0
chrX	124064	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.90;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1684,186,0
chrX	124136	.	C	T	836	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.510;DP=61;Dels=0.00;FS=2.176;HaplotypeScore=10.9812;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=1.051;QD=13.70;ReadPosRankSum=2.374;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:3,57:61:96:869,96,0
chrX	124142	.	T	C	858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0936;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=1.075;QD=13.84;ReadPosRankSum=2.354;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:5,54:62:99:891,102,0
chrX	124157	.	C	T	941	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=17.11;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:974,105,0
chrX	124187	.	G	A	821	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7503;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=14.66;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:90:854,90,0
chrX	124553	.	T	C	1738	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.49;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1771,198,0
chrX	124612	.	A	C	1249	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.71;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1282,138,0
chrX	124691	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.27;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1458,159,0
chrX	124724	.	A	G	1350	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=2.932;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.430;QD=20.45;ReadPosRankSum=2.301;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1383,150,0
chrX	124862	.	A	T	1594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;MQRankSum=-0.736;QD=21.84;ReadPosRankSum=1.637;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1627,174,0
chrX	124877	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.26;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1573,168,0
chrX	124924	.	A	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=16.51;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1486,168,0
chrX	124929	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.716;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=0.346;QD=17.24;ReadPosRankSum=1.689;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1412,156,0
chrX	125021	.	A	G	1483	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.19;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1516,171,0
chrX	125051	.	T	C	1342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=0.390;QD=16.77;ReadPosRankSum=1.602;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1375,153,0
chrX	125052	.	T	C	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;MQRankSum=-0.276;QD=15.94;ReadPosRankSum=2.320;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1260,135,0
chrX	125138	.	T	C	1938	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.07;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1971,222,0
chrX	125166	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.79;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1362,153,0
chrX	125244	.	T	C	989	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.48;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1022,111,0
chrX	125246	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.15;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1115,126,0
chrX	125297	.	T	C	1625	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=4.117;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-0.260;QD=20.31;ReadPosRankSum=1.689;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1658,183,0
chrX	125340	.	C	T	2170	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.37;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2203,234,0
chrX	126146	.	T	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1711,180,0
chrX	126270	.	T	C	777	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=16.53;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:810,90,0
chrX	126287	.	G	A	545	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=12.67;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:66:578,66,0
chrX	126767	.	G	T	510	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=14.17;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:60:543,60,0
chrX	126843	.	A	G	908	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.62;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:941,102,0
chrX	126877	.	G	A	1215	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.59;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1248,138,0
chrX	127054	.	T	C	828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=4.232;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=1.013;QD=15.62;ReadPosRankSum=1.667;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:96:861,96,0
chrX	127081	.	C	T	903	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=19.21;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:936,99,0
chrX	127165	.	T	C	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-1.072;QD=18.84;ReadPosRankSum=1.622;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1220,132,0
chrX	127326	.	A	G	1520	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.660;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.433;QD=21.11;ReadPosRankSum=1.684;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1553,171,0
chrX	127567	.	A	C	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=3.188;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.300;QD=22.40;ReadPosRankSum=0.624;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1713,192,0
chrX	127680	.	A	G	1540	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.39;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1573,174,0
chrX	127798	.	T	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.27;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1614,171,0
chrX	127843	.	G	A	1966	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.06;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1999,216,0
chrX	127981	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.66;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1571,168,0
chrX	128403	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.50;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1468,159,0
chrX	128489	.	T	C	1833	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.6478;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.63;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1866,204,0
chrX	128560	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.22;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1273,132,0
chrX	128573	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4458;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=17.65;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1357,144,0
chrX	128805	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.649;QD=20.59;ReadPosRankSum=1.690;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1742,189,0
chrX	129738	.	T	C	2183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.698;QD=21.40;ReadPosRankSum=1.630;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2216,246,0
chrX	130174	.	G	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.03;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1137,120,0
chrX	130653	.	C	A	1785	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=22.04;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1818,204,0
chrX	130774	.	T	A	2909	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2122;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.65;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2942,312,0
chrX	131168	.	C	T	2188	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=24.04;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2221,237,0
chrX	131236	.	T	C	1879	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=17.90;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1912,207,0
chrX	131240	.	C	T	2138	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.7214;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.92;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2171,234,0
chrX	132405	.	C	T	1223	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.41;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1256,138,0
chrX	133192	.	G	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.77;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1965,207,0
chrX	133354	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7349;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.315;QD=19.52;ReadPosRankSum=1.627;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1321,147,0
chrX	133964	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.74;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1541,165,0
chrX	134085	.	C	T	654	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=13.08;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:75:687,75,0
chrX	134512	.	G	A	920	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.40;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:953,102,0
chrX	135037	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=71;Dels=0.00;FS=5.994;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.129;QD=16.85;ReadPosRankSum=2.844;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:3,68:71:99:1229,141,0
chrX	135166	.	A	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.03;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1673,189,0
chrX	135448	.	T	C	1342	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1375,150,0
chrX	135579	.	T	C	2099	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.7296;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.20;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2132,243,0
chrX	135754	.	C	T	1696	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.43;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1729,186,0
chrX	135793	.	T	G	1670	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.521;QD=21.69;ReadPosRankSum=1.906;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1703,192,0
chrX	135996	.	A	G	1577	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.47;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1610,174,0
chrX	136071	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.542;QD=18.34;ReadPosRankSum=1.685;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1372,156,0
chrX	136195	.	G	A	1834	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.82;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1867,198,0
chrX	136506	.	C	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.5587;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.82;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1328,141,0
chrX	136605	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;DP=70;Dels=0.00;FS=5.384;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.029;QD=17.51;ReadPosRankSum=2.900;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1259,138,0
chrX	136623	.	A	C	992	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=14.81;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1025,117,0
chrX	136648	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=74;Dels=0.00;FS=3.133;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.444;QD=16.96;ReadPosRankSum=-0.529;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1288,144,0
chrX	137767	.	G	A	1784	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.20;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1817,198,0
chrX	137840	.	C	T	2698	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.26;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2731,297,0
chrX	138236	.	C	G	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-1.237;QD=19.45;ReadPosRankSum=1.017;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:99:1297,144,0
chrX	138244	.	C	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.53;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1347,153,0
chrX	138281	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.98;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1115,126,0
chrX	138413	.	C	T	1895	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.40;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1928,204,0
chrX	138713	.	A	G	1989	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=94;Dels=0.00;FS=2.972;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.516;QD=21.16;ReadPosRankSum=2.344;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:2,91:94:99:2022,216,0
chrX	138971	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=3.233;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.169;QD=18.06;ReadPosRankSum=1.646;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1496,165,0
chrX	139013	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.59;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1130,123,0
chrX	139034	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.6406;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.28;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1209,135,0
chrX	139088	.	A	G	1211	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=16.59;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1244,135,0
chrX	139142	.	T	C	992	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9111;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.144;QD=13.59;ReadPosRankSum=-0.626;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:95:1025,95,0
chrX	139214	.	G	A	896	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.91;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:96:929,96,0
chrX	139438	.	C	T	844	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.64;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:877,93,0
chrX	139468	.	A	T	996	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.64;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1029,108,0
chrX	139505	.	A	G	474	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=17.56;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:57:507,57,0
chrX	139506	.	A	G	487	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.39;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,27:28:57:520,57,0
chrX	139563	.	C	T	334	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.56;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:39:367,39,0
chrX	139713	.	T	C	647	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.04;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=23.11;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:75:680,75,0
chrX	139819	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.3836;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.87;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1225,138,0
chrX	140069	.	T	C	747	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=20.75;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:780,84,0
chrX	140107	.	A	G	642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;MQRankSum=-0.165;QD=15.29;ReadPosRankSum=1.568;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:75:675,75,0
chrX	140117	.	A	G	689	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.88;MQ0=0;QD=15.66;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:722,81,0
chrX	140129	.	C	T	609	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=13.84;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:72:642,72,0
chrX	140130	.	G	A	637	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=14.48;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:72:670,72,0
chrX	140133	.	T	G	651	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=14.80;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:72:684,72,0
chrX	140135	.	T	C	708	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=12.509;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;MQRankSum=-2.299;QD=14.45;ReadPosRankSum=2.350;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:81:741,81,0
chrX	140161	.	G	C	866	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.24;MQ0=0;QD=15.46;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:899,96,0
chrX	140231	.	G	A	961	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.88;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:994,105,0
chrX	140364	.	T	C	1186	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=10.6931;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.937;QD=19.13;ReadPosRankSum=1.675;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1219,135,0
chrX	140417	.	G	A	922	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.82;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:955,105,0
chrX	140649	.	T	A	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.412;QD=21.67;ReadPosRankSum=1.679;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1485,159,0
chrX	140738	.	A	G	1850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=5.283;HaplotypeScore=6.7105;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.091;QD=22.84;ReadPosRankSum=1.689;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1883,210,0
chrX	140782	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.51;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1474,165,0
chrX	140874	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2973;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.299;QD=21.00;ReadPosRankSum=1.609;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1209,135,0
chrX	141376	.	T	C	2008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=4.500;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.354;QD=20.92;ReadPosRankSum=1.695;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,92:96:99:2041,222,0
chrX	141409	.	G	A	1905	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.32;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:1938,213,0
chrX	141647	.	C	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.85;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1937,216,0
chrX	141656	.	G	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=19.67;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1764,195,0
chrX	141658	.	T	C	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=90;Dels=0.00;FS=2.845;HaplotypeScore=4.2110;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-1.683;QD=17.94;ReadPosRankSum=2.313;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1648,180,0
chrX	141743	.	A	G	2128	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.711;QD=22.40;ReadPosRankSum=1.659;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2161,237,0
chrX	141800	.	C	T	3093	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.5715;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.48;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:3126,342,0
chrX	141883	.	A	T	3778.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=172;Dels=0.00;FS=3.112;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=-0.544;QD=21.97;ReadPosRankSum=1.672;SB=-1.976e+03	GT:AD:DP:GQ:PL	1/1:1,171:172:99:3778,405,0
chrX	141900	.	C	T	3220.05	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=22.06;SB=-1.732e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3253,342,0
chrX	141924	.	G	A	2316	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.53;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2349,249,0
chrX	142022	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8327;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=18.89;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1374,147,0
chrX	142168	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.68;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1708,189,0
chrX	142186	.	G	A	1999	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.49;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2032,216,0
chrX	142222	.	G	A	2016	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=19.96;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2049,219,0
chrX	142256	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=19.80;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1716,183,0
chrX	142259	.	G	C	1554	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.76;MQ0=0;QD=18.72;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1587,183,0
chrX	142307	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=16.91;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1318,150,0
chrX	142640	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.74;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1533,162,0
chrX	142749	.	T	A	1997	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-0.081;QD=23.22;ReadPosRankSum=1.692;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2030,216,0
chrX	143026	.	T	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.93;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1268,135,0
chrX	143033	.	G	C	1168	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.47;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:60:99:1201,132,0
chrX	143163	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.65;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1604,171,0
chrX	143166	.	G	A	1600	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.39;SB=-1.460e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1633,174,0
chrX	143550	.	T	G	1667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=3.069;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=0.254;QD=21.93;ReadPosRankSum=1.640;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1700,186,0
chrX	143678	.	A	T	1621	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.52;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1654,177,0
chrX	144098	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0958;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.10;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1246,144,0
chrX	144131	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7525;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=13.98;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:928,102,0
chrX	144137	.	G	A	1050	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=14.79;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1083,114,0
chrX	144218	.	C	T	2068	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.10;SB=-1.198e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2101,231,0
chrX	144320	.	T	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.84;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1471,159,0
chrX	144344	.	T	C	1219	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.05;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1252,138,0
chrX	144368	.	G	A	1200	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.00;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1233,132,0
chrX	144558	.	A	G	1817	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.42;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1850,198,0
chrX	144890	.	C	T	3225.28	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.07;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3258,342,0
chrX	144958	.	G	T	2190	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=25.1725;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.55;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2223,237,0
chrX	145291	.	A	G	1593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=2.731;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.829;QD=23.78;ReadPosRankSum=2.376;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1626,183,0
chrX	145341	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.21;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1221,129,0
chrX	145726	.	C	T	1042	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.30;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1075,114,0
chrX	145771	.	A	G	1009	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.04;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,50:53:99:1042,114,0
chrX	145879	.	A	G	792	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.86;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:825,93,0
chrX	146059	.	C	G	1346	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=20.39;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1379,153,0
chrX	146072	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=20.09;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1399,147,0
chrX	146083	.	C	T	1666	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;QD=21.09;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1699,180,0
chrX	146367	.	G	A	1506	SnpCluster	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=17.51;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1539,162,0
chrX	146369	.	G	A	1467	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=17.26;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1500,165,0
chrX	146376	.	T	C	1441	SnpCluster	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=15.49;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1474,162,0
chrX	146388	.	C	T	775	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;QD=8.33;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:90:808,90,0
chrX	146394	.	A	G	766	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=8.80;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:90:799,90,0
chrX	146412	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=41.89;MQ0=0;MQRankSum=-1.732;QD=10.47;ReadPosRankSum=1.697;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1070,120,0
chrX	146535	.	G	A	2508	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.80;SB=-1.338e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2541,267,0
chrX	146580	.	C	T	2140	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2527;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.98;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2173,234,0
chrX	146598	.	T	A	1771	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.60;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1804,186,0
chrX	146738	.	G	A	986	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.4765;MLEAC=2;MLEAF=1.00;MQ=43.39;MQ0=0;QD=15.90;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1019,111,0
chrX	146741	.	C	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;QD=16.21;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1103,117,0
chrX	146864	.	A	T	2917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;DP=130;Dels=0.00;FS=6.620;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=0.893;QD=22.44;ReadPosRankSum=2.354;SB=-1.633e+03	GT:AD:DP:GQ:PL	1/1:2,128:130:99:2950,309,0
chrX	147014	.	G	T	1023	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.31;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1056,111,0
chrX	147143	.	C	T	2506	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.71;SB=-1.544e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2539,270,0
chrX	147612	.	T	C	2233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.606;QD=18.45;ReadPosRankSum=1.703;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:1,119:121:99:2266,249,0
chrX	147613	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.043;QD=18.45;ReadPosRankSum=1.703;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2265,252,0
chrX	149011	.	T	C	1775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=84;Dels=0.00;FS=3.340;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.887;QD=21.13;ReadPosRankSum=1.690;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:2,81:84:99:1808,198,0
chrX	149085	.	A	G	1903	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.68;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1936,216,0
chrX	149101	.	A	G	1953	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.00;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1986,219,0
chrX	149152	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.81;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1625,174,0
chrX	149212	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=10.4430;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.00;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1233,132,0
chrX	149320	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.866;QD=20.10;ReadPosRankSum=0.914;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1480,162,0
chrX	149401	.	G	A	1746	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.40;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1779,198,0
chrX	149570	.	A	G	891	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.18;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:924,99,0
chrX	149680	.	C	T	1681	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.8420;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.55;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1714,177,0
chrX	149821	.	T	C	1987	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.237;QD=23.65;ReadPosRankSum=1.691;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:2020,222,0
chrX	149864	.	A	G	1742	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.51;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1775,195,0
chrX	150181	.	G	A	1590	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.39;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1623,171,0
chrX	150264	.	G	A	699	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=12.71;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:81:732,81,0
chrX	150265	.	G	A	738	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.68;MQ0=0;QD=13.92;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:81:771,81,0
chrX	150482	.	A	G	895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=48;Dels=0.00;FS=6.307;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.290;QD=18.65;ReadPosRankSum=2.345;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:928,102,0
chrX	150563	.	A	G	1090	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.19;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1123,126,0
chrX	150688	.	C	A	743	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.55;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:776,84,0
chrX	150695	.	T	C	739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=5.607;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.087;QD=18.02;ReadPosRankSum=1.646;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:87:772,87,0
chrX	150706	.	G	A	791	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.83;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:87:824,87,0
chrX	150764	.	A	C	796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;MQRankSum=-0.654;QD=17.69;ReadPosRankSum=1.655;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:93:829,93,0
chrX	150818	.	A	G	588	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.80;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:69:621,69,0
chrX	150829	.	C	T	582	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.63;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:66:615,66,0
chrX	150921	.	T	C	1047	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.94;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1080,117,0
chrX	151221	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=22.28;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1838,204,0
chrX	151359	.	A	G	2143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=2.608;HaplotypeScore=6.4071;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.298;QD=22.32;ReadPosRankSum=2.398;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:2,93:96:99:2176,237,0
chrX	151494	.	G	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.29;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1259,132,0
chrX	151609	.	C	T	2662	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.18;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2695,288,0
chrX	151845	.	C	T	2765	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.43;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2798,297,0
chrX	152136	.	C	T	2118	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1342;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.29;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2151,228,0
chrX	152244	.	T	C	1859	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=15.62;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,118:119:99:1892,204,0
chrX	152412	.	C	G	1268	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.47;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1301,141,0
chrX	152475	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.78;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1754,189,0
chrX	152577	.	A	T	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.579;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.881;QD=21.47;ReadPosRankSum=1.672;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1257,135,0
chrX	153250	.	G	A	771	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:804,87,0
chrX	153377	.	A	C	2346	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8864;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=23.46;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,97:100:99:2379,267,0
chrX	153819	.	A	G	458.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.935;DP=64;Dels=0.00;FS=150.579;HaplotypeScore=10.4445;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=0;MQRankSum=6.416;QD=7.16;ReadPosRankSum=-1.400;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:27,37:64:99:488,0,537
chrX	154467	.	A	G	1324	filter	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=43;QD=13.94;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1357,147,0
chrX	154746	.	C	T	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=106;Dels=0.00;FS=2.033;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;MQRankSum=0.075;QD=18.27;ReadPosRankSum=-0.879;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:4,102:106:99:1970,207,0
chrX	154973	.	A	G	1006	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.29;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1039,117,0
chrX	154996	.	G	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.43;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1320,138,0
chrX	155095	.	G	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.1563;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.08;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1674,186,0
chrX	155741	.	T	A	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=81;Dels=0.00;FS=4.393;HaplotypeScore=8.1499;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=0.967;QD=16.88;ReadPosRankSum=1.642;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1400,147,0
chrX	155930	.	A	G	2495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;DP=112;Dels=0.00;FS=6.300;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=0.366;QD=22.28;ReadPosRankSum=2.405;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:2,109:112:99:2528,273,0
chrX	155973	.	C	T	2361	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=22.07;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2394,255,0
chrX	155988	.	T	G	1887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=2.737;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-0.684;QD=19.06;ReadPosRankSum=2.400;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:1920,216,0
chrX	155999	.	G	A	2095	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=21.38;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2128,225,0
chrX	156185	.	G	A	1560	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.80;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1593,168,0
chrX	156356	.	T	G	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8756;MLEAC=2;MLEAF=1.00;MQ=47.24;MQ0=0;MQRankSum=-0.022;QD=16.29;ReadPosRankSum=1.327;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1287,141,0
chrX	156360	.	A	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.76;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1347,147,0
chrX	156375	.	T	C	1766	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.66;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1799,198,0
chrX	156493	.	A	T	1438	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=7.038;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;MQRankSum=-1.199;QD=15.80;ReadPosRankSum=1.694;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1471,156,0
chrX	156505	.	T	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=13.44;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1229,135,0
chrX	156530	.	T	C	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.313;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.1988;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-0.027;QD=13.75;ReadPosRankSum=3.767;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:5,113:118:99:1655,183,0
chrX	156863	.	T	A	3040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=0.638;QD=22.69;ReadPosRankSum=1.654;SB=-1.626e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:3073,327,0
chrX	157299	.	T	C	4009.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.187;QD=22.52;ReadPosRankSum=1.713;SB=-1.771e+03	GT:AD:DP:GQ:PL	1/1:1,177:178:99:4009,435,0
chrX	157487	.	A	G	1702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.692;QD=19.79;ReadPosRankSum=1.692;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1735,195,0
chrX	157619	.	A	T	2709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.535;QD=21.85;ReadPosRankSum=1.704;SB=-1.471e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2742,306,0
chrX	158168	.	G	A	2050	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.04;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2083,222,0
chrX	158866	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.043;QD=16.67;ReadPosRankSum=2.363;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1450,162,0
chrX	159076	.	G	A	741	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=19.50;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:774,84,0
chrX	159097	.	G	A	508	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=15.87;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:60:541,60,0
chrX	159120	.	A	G	576	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=17.45;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:609,72,0
chrX	159124	.	T	C	572	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=16.82;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:605,66,0
chrX	159135	.	G	A	553	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.28;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,31:32:63:586,63,0
chrX	159201	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=4.698;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-1.732;QD=21.03;ReadPosRankSum=1.674;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1274,141,0
chrX	159419	.	A	T	260.33	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=5.312;DP=56;Dels=0.00;FS=38.984;HaplotypeScore=40.1789;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;MQRankSum=2.727;QD=4.65;ReadPosRankSum=5.130;SB=-2.233e+02	GT:AD:DP:GQ:PL	1/1:17,39:56:14:293,14,0
chrX	159420	.	C	T	276	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=40.1789;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;MQRankSum=1.604;QD=4.93;ReadPosRankSum=2.088;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:2,40:56:33:309,33,0
chrX	159429	.	C	A	49.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.800;DP=85;Dels=0.02;FS=135.728;HaplotypeScore=50.1407;MLEAC=1;MLEAF=0.500;MQ=32.47;MQ0=0;MQRankSum=-1.448;QD=0.58;ReadPosRankSum=-3.500;SB=1.11	GT:AD:DP:GQ:PL	0/1:44,39:83:79:79,0,156
chrX	159754	.	T	C	631	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=18.03;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,31:35:75:664,75,0
chrX	159830	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.85;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1409,156,0
chrX	161596	.	A	G	2353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.114;QD=18.24;ReadPosRankSum=1.705;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2386,270,0
chrX	162192	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=19.51;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1750,198,0
chrX	162208	.	G	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=17.26;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1586,180,0
chrX	162223	.	A	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=16.66;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1449,150,0
chrX	162228	.	C	G	1385	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=16.69;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1418,153,0
chrX	162327	.	A	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.14;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1555,171,0
chrX	162424	.	G	A	1707	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.07;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1740,192,0
chrX	162437	.	G	A	1859	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.36;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1892,198,0
chrX	162522	.	C	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.49;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1701,180,0
chrX	162765	.	C	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.48;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1377,147,0
chrX	162768	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.65;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1286,135,0
chrX	162822	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.65;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1480,168,0
chrX	162832	.	A	C	1551	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.25;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1584,177,0
chrX	162922	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.51;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1224,129,0
chrX	162937	.	C	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.63;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1449,153,0
chrX	163370	.	C	T	2582	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.05;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2615,273,0
chrX	163417	.	G	A	2236	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=21.71;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2269,243,0
chrX	163422	.	T	C	2066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.840;QD=19.87;ReadPosRankSum=1.664;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:1,100:104:99:2099,231,0
chrX	163446	.	A	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=17.88;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1660,183,0
chrX	163467	.	G	C	1496	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1588;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.24;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1529,171,0
chrX	163507	.	T	C	1889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=102;Dels=0.00;FS=10.867;HaplotypeScore=11.9683;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.414;QD=18.52;ReadPosRankSum=2.889;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:3,97:102:99:1922,210,0
chrX	163656	.	C	G	1080	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1113,126,0
chrX	163830	.	A	C	2364	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=12.7243;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.41;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2397,264,0
chrX	163958	.	C	T	2463	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.60;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,104:109:99:2496,267,0
chrX	163993	.	A	G	2351	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.05;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,99:102:99:2384,261,0
chrX	164155	.	C	T	2426	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.86;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2459,261,0
chrX	164308	.	C	T	3711.01	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=10.8616;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.79;SB=-1.607e+03	GT:AD:DP:GQ:PL	1/1:0,155:156:99:3711,388,0
chrX	164955	.	C	G	1499	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.72;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1532,168,0
chrX	165369	.	C	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1729,192,0
chrX	165565	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.31;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1468,162,0
chrX	166221	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.12;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1792,189,0
chrX	166362	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.54;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1381,147,0
chrX	166575	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.577;QD=17.65;ReadPosRankSum=1.688;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1410,159,0
chrX	166814	.	C	T	1266	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.78;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1299,144,0
chrX	166911	.	C	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.97;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1857,204,0
chrX	167196	.	G	A	1509	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.56;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1542,165,0
chrX	167199	.	A	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.39;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1481,159,0
chrX	167286	.	C	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.91;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2005,210,0
chrX	167289	.	C	T	1947	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.40;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1980,210,0
chrX	167364	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=17.44;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1882,201,0
chrX	167370	.	G	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.92;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:1877,201,0
chrX	167814	.	C	T	2171	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.15;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2204,231,0
chrX	167955	.	C	T	1793	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.14;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1826,201,0
chrX	167997	.	C	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.66;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1748,183,0
chrX	168672	.	G	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.78;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1710,192,0
chrX	168888	.	T	C	2305	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.95;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2338,252,0
chrX	169122	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.22;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1359,153,0
chrX	169569	.	G	A	1655	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.99;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1688,186,0
chrX	170079	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1192,129,0
chrX	170556	.	T	A	1683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.012;QD=21.58;ReadPosRankSum=1.687;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1716,186,0
chrX	170649	.	C	A	2084	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.23;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2117,231,0
chrX	171357	.	A	G	904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.193;QD=19.65;ReadPosRankSum=1.655;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:937,102,0
chrX	171764	.	T	C	885	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.83;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:918,102,0
chrX	172240	.	A	G	1043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.393;QD=20.45;ReadPosRankSum=1.597;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1076,117,0
chrX	172657	.	A	T	841	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.52;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:874,93,0
chrX	172660	.	A	G	888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.645;QD=17.41;ReadPosRankSum=1.597;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:921,105,0
chrX	173226	.	G	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=15.73;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1323,150,0
chrX	173342	.	G	A	946	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=10.7126;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=15.51;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:979,102,0
chrX	173354	.	A	G	876	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=2;MLEAF=1.00;MQ=41.01;MQ0=0;QD=13.48;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:909,99,0
chrX	173360	.	G	A	905	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=14.14;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:938,99,0
chrX	173397	.	G	A	794	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=11.85;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:90:827,90,0
chrX	173399	.	C	T	893	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.33;MQ0=0;QD=13.53;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:926,99,0
chrX	173420	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=14.15;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1151,126,0
chrX	173459	.	T	C	1642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;MQRankSum=-1.732;QD=16.10;ReadPosRankSum=1.698;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1675,183,0
chrX	173479	.	T	A	2527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.264;QD=19.59;ReadPosRankSum=2.411;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:2,127:129:99:2560,267,0
chrX	173581	.	A	T	4200.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=187;Dels=0.00;FS=5.658;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.337;QD=22.46;ReadPosRankSum=1.694;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:1,186:187:99:4200,447,0
chrX	173746	.	T	C	1788	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=3.877;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=-0.544;QD=17.03;ReadPosRankSum=1.699;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:1,104:105:99:1821,201,0
chrX	173769	.	T	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=19.07;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2531,264,0
chrX	173883	.	A	G	2123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=1.052;QD=18.96;ReadPosRankSum=1.485;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2156,234,0
chrX	174178	.	C	T	2189	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.79;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2222,237,0
chrX	174297	.	G	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=17.00;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1257,132,0
chrX	174303	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=17.00;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1274,138,0
chrX	174512	.	C	T	2481	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.63;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,102:105:99:2514,261,0
chrX	175309	.	C	T	2206	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.24;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2239,234,0
chrX	175519	.	T	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.33;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1249,135,0
chrX	175555	.	T	A	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=3.245;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.942;QD=22.19;ReadPosRankSum=1.672;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1320,141,0
chrX	175633	.	C	G	1539	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.32;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1572,171,0
chrX	175695	.	C	T	1083	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=15.25;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1116,120,0
chrX	175828	.	T	C	1336	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.04;FS=0.000;HaplotypeScore=9.9203;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.09;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1369,153,0
chrX	176039	.	G	C	1043	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.86;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1076,117,0
chrX	176123	.	T	G	804	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=4.075;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.226;QD=17.48;ReadPosRankSum=1.657;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:90:837,90,0
chrX	176153	.	G	A	990	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=17.37;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1023,111,0
chrX	176225	.	T	G	723	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=15.72;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:756,84,0
chrX	176228	.	T	C	771	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.13;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:804,87,0
chrX	176572	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.80;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1260,141,0
chrX	176615	.	C	A	1178	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.81;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1211,126,0
chrX	176636	.	G	A	1200	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.00;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1233,132,0
chrX	176674	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.80;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1198,132,0
chrX	177124	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5752;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.99;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1792,195,0
chrX	177205	.	T	C	1936	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.78;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1969,219,0
chrX	177327	.	T	C	1735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=7.874;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.406;QD=22.83;ReadPosRankSum=2.385;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1768,195,0
chrX	177532	.	G	A	2078	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.87;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2111,228,0
chrX	177584	.	C	T	952	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.26;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:985,108,0
chrX	177594	.	A	C	757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=0.515;QD=20.46;ReadPosRankSum=1.639;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:87:790,87,0
chrX	177798	.	C	T	878	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:911,102,0
chrX	178010	.	G	T	2597	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=27.34;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2630,273,0
chrX	178616	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1541,162,0
chrX	179084	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.57;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1297,144,0
chrX	179602	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.54;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1368,150,0
chrX	180185	.	T	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=20.03;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1916,219,0
chrX	180249	.	C	T	1301	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.33;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1334,141,0
chrX	180417	.	A	G	1953	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.25;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1986,213,0
chrX	180800	.	C	G	2585	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.4637;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=21.91;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2618,294,0
chrX	181205	.	G	A	2159	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=11.6858;MLEAC=2;MLEAF=1.00;MQ=60.42;MQ0=0;QD=17.70;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2192,231,0
chrX	181523	.	G	C	1127	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7139;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.78;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1160,132,0
chrX	181907	.	T	G	1299	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.1130;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.65;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,56:60:99:1332,141,0
chrX	181957	.	G	A	988	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=16.75;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1021,108,0
chrX	181967	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=16.72;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1103,123,0
chrX	182825	.	G	A	1866	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4040;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.64;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1899,201,0
chrX	183174	.	C	T	1201	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=16.68;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1234,129,0
chrX	183192	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.203;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.628;QD=18.23;ReadPosRankSum=1.682;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1291,144,0
chrX	183383	.	G	T	2374	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.19;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2407,255,0
chrX	183608	.	T	C	2023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.5137;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.434;QD=21.75;ReadPosRankSum=1.695;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2056,225,0
chrX	183624	.	A	G	2110	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.53;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2143,234,0
chrX	183648	.	G	C	2013	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.74;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2046,228,0
chrX	183738	.	C	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.20;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1473,165,0
chrX	183827	.	T	C	1348	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=17.97;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1381,153,0
chrX	183834	.	C	T	1281	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.08;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1314,138,0
chrX	184128	.	C	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.33;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1142,120,0
chrX	184212	.	A	G	697	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=14.22;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:730,81,0
chrX	184236	.	C	T	333.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=23.8450;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;MQRankSum=0.675;QD=9.52;ReadPosRankSum=2.168;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:2,33:35:19:366,19,0
chrX	184244	.	G	C	155.06	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=3.88;SB=-3.081e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:21:188,21,0
chrX	184249	.	T	C	451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=0.083;QD=10.74;ReadPosRankSum=1.155;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:54:484,54,0
chrX	184421	.	G	T	1687	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.76;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1720,180,0
chrX	184438	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=65;Dels=0.00;FS=6.960;HaplotypeScore=4.8647;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=0.637;QD=20.17;ReadPosRankSum=2.296;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:2,62:65:99:1344,144,0
chrX	184439	.	A	G	1299	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2874;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.30;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1332,144,0
chrX	184592	.	C	T	845	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.84;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:93:878,93,0
chrX	184824	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.98;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1271,138,0
chrX	184846	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.525;QD=17.34;ReadPosRankSum=0.945;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1195,111,0
chrX	184848	.	T	C	1084	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5633;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.94;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1117,123,0
chrX	185090	.	T	C	1726	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.31;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1759,195,0
chrX	185246	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8286;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.48;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1364,147,0
chrX	185641	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.34;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1329,147,0
chrX	185699	.	G	A	1040	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.39;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1073,120,0
chrX	186425	.	C	T	1386	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.69;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1419,156,0
chrX	187652	.	G	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1316,144,0
chrX	188325	.	G	A	1703	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.33;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1736,183,0
chrX	188535	.	T	G	1257	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=18.76;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1290,138,0
chrX	188547	.	A	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.41;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1060,120,0
chrX	188919	.	T	A	962	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.86;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:995,105,0
chrX	188961	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.87;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1062,114,0
chrX	189030	.	C	T	867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.7530;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.181;QD=18.85;ReadPosRankSum=-1.496;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:99:900,99,0
chrX	189051	.	C	T	850	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=16.67;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:883,96,0
chrX	189105	.	G	A	826	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=14.24;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:93:859,93,0
chrX	189441	.	T	C	579	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.55;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:66:612,66,0
chrX	189631	.	G	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.27;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1229,129,0
chrX	189655	.	A	T	1679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=6.329;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-0.925;QD=23.00;ReadPosRankSum=1.685;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1712,183,0
chrX	189701	.	C	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.95;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1590,168,0
chrX	191229	.	A	G	1594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.217;QD=21.54;ReadPosRankSum=1.639;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1627,174,0
chrX	191341	.	T	C	732	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=5.582;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=1.143;QD=15.57;ReadPosRankSum=1.659;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:84:765,84,0
chrX	191353	.	T	C	684	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=16.68;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:78:717,78,0
chrX	191458	.	A	T	1257	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.95;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1290,138,0
chrX	191621	.	A	T	908	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.53;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:941,102,0
chrX	192186	.	G	C	984	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.08;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1017,114,0
chrX	192229	.	C	A	852	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.75;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:885,99,0
chrX	192474	.	C	T	2729	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.9429;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.01;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2762,300,0
chrX	193855	.	A	G	1456	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=25.54;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1489,165,0
chrX	194790	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.52;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1902,198,0
chrX	195198	.	A	C	861	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.25;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:894,102,0
chrX	195664	.	G	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.44;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1219,132,0
chrX	196517	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.77;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1472,159,0
chrX	196595	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.71;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1923,204,0
chrX	197008	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.65;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1566,168,0
chrX	197018	.	G	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.32;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1540,165,0
chrX	197418	.	A	G	497	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.12;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:57:530,57,0
chrX	197455	.	C	T	1026	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=18.32;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1059,120,0
chrX	197543	.	C	A	143.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;DP=49;Dels=0.00;FS=52.521;HaplotypeScore=19.6337;MLEAC=1;MLEAF=0.500;MQ=24.65;MQ0=1;MQRankSum=3.488;QD=2.92;ReadPosRankSum=4.179;SB=-6.513e-03	GT:AD:DP:GQ:PL	0/1:36,12:49:64:173,0,64
chrX	197625	.	T	C	208.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.70;MQ0=46;MQRankSum=-1.653;QD=3.41;ReadPosRankSum=0.551;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,15:61:67:238,0,67
chrX	197934	.	G	A	51.97	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.95;MQ0=30;QD=1.53;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:0,33:34:9:84,9,0
chrX	198669	.	G	A	325	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.64;MQ0=27;QD=6.77;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:9,39:48:42:358,42,0
chrX	198773	.	T	C	156.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.30;MQ0=19;MQRankSum=0.496;QD=4.73;ReadPosRankSum=1.240;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:11,22:33:21:189,21,0
chrX	198840	.	G	A	38.97	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.49;MQ0=14;QD=2.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:9:71,9,0
chrX	199170	.	A	C	378	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=8;MQRankSum=-0.964;QD=14.54;ReadPosRankSum=1.542;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:1,21:26:48:411,48,0
chrX	199389	.	G	A	1188	filter	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.64;MQ0=11;QD=14.67;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1221,135,0
chrX	200118	.	A	C	2656	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.605;DP=129;Dels=0.00;FS=23.512;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=5;MQRankSum=-0.070;QD=20.59;ReadPosRankSum=3.772;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:5,123:129:99:2689,303,0
chrX	200219	.	A	G	890	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=9;QD=17.80;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:923,102,0
chrX	200277	.	G	T	757	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=18.46;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:90:790,90,0
chrX	200499	.	G	A	2840	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=22.54;SB=-1.479e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2873,300,0
chrX	200530	.	G	C	1999	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=2;QD=19.41;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2032,225,0
chrX	200888	.	T	C	1619	filter	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=5;QD=16.69;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:2,95:97:99:1652,189,0
chrX	201045	.	T	C	541	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.01;MQ0=4;MQRankSum=1.500;QD=14.24;ReadPosRankSum=2.306;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:2,36:38:69:574,69,0
chrX	201150	.	A	T	118.13	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.37;MQ0=9;QD=3.28;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:1,35:36:18:151,18,0
chrX	201153	.	A	T	90.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.467;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.50;MQ0=9;MQRankSum=-1.733;QD=2.58;ReadPosRankSum=1.600;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:1,34:35:15:123,15,0
chrX	201162	.	T	C	298	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=41;Dels=0.00;FS=12.175;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.11;MQ0=8;MQRankSum=0.053;QD=7.27;ReadPosRankSum=1.523;SB=-7.607e-03	GT:AD:DP:GQ:PL	1/1:2,39:41:36:331,36,0
chrX	201282	.	C	T	583	filter	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=24;QD=7.99;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:7,66:73:72:616,72,0
chrX	201370	.	A	G	382	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.63;MQ0=9;QD=6.47;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:51:415,51,0
chrX	201443	.	T	A	61.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.302;DP=27;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.69;MQ0=11;MQRankSum=-0.217;QD=2.28;ReadPosRankSum=-1.519;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:6,21:27:12:94,12,0
chrX	201446	.	C	T	39.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DP=25;Dels=0.00;FS=4.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.96;MQ0=12;MQRankSum=1.203;QD=1.60;ReadPosRankSum=-0.935;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:6,19:25:9:72,9,0
chrX	201451	.	A	G	40.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.470;DP=26;Dels=0.00;FS=4.150;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.75;MQ0=13;MQRankSum=-0.935;QD=1.58;ReadPosRankSum=-0.935;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:9,17:26:9:73,9,0
chrX	201612	.	C	T	895	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;DP=83;Dels=0.00;FS=3.358;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=15.49;MQ0=31;MQRankSum=-1.266;QD=10.78;ReadPosRankSum=-0.800;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:12,71:83:99:928,114,0
chrX	201706	.	G	A	645	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=8;QD=16.12;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:678,78,0
chrX	201718	.	C	A	436	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.22;MQ0=9;QD=13.62;SB=-9.901e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:57:469,57,0
chrX	202260	.	C	T	109.26	filter	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.30;MQ0=87;QD=1.17;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:41,52:93:15:142,15,0
chrX	202401	.	C	T	951	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.51;MQ0=4;QD=23.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:99:984,105,0
chrX	202764	.	C	T	1652	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=103;Dels=0.00;FS=3.869;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=22.34;MQ0=24;MQRankSum=0.666;QD=16.04;ReadPosRankSum=-0.444;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:13,90:103:99:1685,182,0
chrX	204142	.	A	C	67.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.075;DP=106;Dels=0.00;FS=247.945;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.49;MQ0=7;MQRankSum=7.783;QD=0.64;ReadPosRankSum=3.261;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:36,69:106:12:100,12,0
chrX	204144	.	A	G	65.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.619;DP=110;Dels=0.00;FS=264.843;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=8;MQRankSum=8.074;QD=0.60;ReadPosRankSum=2.860;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:40,70:110:12:98,12,0
chrX	204181	.	C	T	188.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.277;DP=107;Dels=0.00;FS=263.126;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=18.17;MQ0=15;MQRankSum=8.258;QD=1.76;ReadPosRankSum=-2.370;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:61,46:107:24:221,24,0
chrX	204184	.	A	G	161.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.433;DP=107;Dels=0.00;FS=263.126;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=17.95;MQ0=16;MQRankSum=8.212;QD=1.51;ReadPosRankSum=-2.465;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:62,45:107:21:194,21,0
chrX	204279	.	T	A	379	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.666;DP=65;Dels=0.00;FS=10.170;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=13;MQRankSum=1.666;QD=5.83;ReadPosRankSum=-1.399;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:14,51:65:48:412,48,0
chrX	204292	.	T	G	510	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.193;DP=65;Dels=0.00;FS=4.912;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=8;MQRankSum=0.065;QD=7.85;ReadPosRankSum=0.629;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:9,56:65:63:543,63,0
chrX	204309	.	T	A	713	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=4;MQRankSum=-1.842;QD=10.19;ReadPosRankSum=2.787;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:9,61:70:81:746,81,0
chrX	204339	.	C	G	1915	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=20.82;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1948,207,0
chrX	204641	.	A	G	1887	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=22.20;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1920,210,0
chrX	206537	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1502,168,0
chrX	206703	.	T	C	1630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.702;DP=79;Dels=0.00;FS=6.051;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.779;QD=20.63;ReadPosRankSum=2.910;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:3,75:79:99:1663,183,0
chrX	206790	.	C	T	1962	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.44;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1995,216,0
chrX	206922	.	C	T	1897	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.0540;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.97;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,90:95:99:1930,204,0
chrX	207161	.	G	A	2463	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.05;SB=-1.395e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2496,276,0
chrX	207695	.	T	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.61;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1759,189,0
chrX	208377	.	G	A	1034	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.10;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1067,111,0
chrX	208398	.	T	C	1109	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.46;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1142,129,0
chrX	208641	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.58;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1414,159,0
chrX	209220	.	T	C	1749	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1782,198,0
chrX	209321	.	T	A	2428	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.83;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2461,255,0
chrX	209759	.	G	A	1879	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.98;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1912,204,0
chrX	209763	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=-0.850;QD=16.82;ReadPosRankSum=1.699;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1816,207,0
chrX	209814	.	C	T	2777	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=18.27;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:2810,297,0
chrX	209866	.	A	G	3105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=-0.458;QD=20.29;ReadPosRankSum=2.417;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:2,151:153:99:3138,348,0
chrX	209880	.	A	T	3029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.101;DP=141;Dels=0.00;FS=7.474;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.403;QD=21.48;ReadPosRankSum=4.132;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:6,135:141:99:3062,324,0
chrX	209951	.	C	T	2340	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.72;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2373,249,0
chrX	210420	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.69;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1864,198,0
chrX	210462	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=16.70;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1386,156,0
chrX	210582	.	T	A	1213	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.210;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.015;QD=20.91;ReadPosRankSum=1.673;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1246,132,0
chrX	210603	.	G	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=17.75;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1187,129,0
chrX	210727	.	G	C	945	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.50;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:978,105,0
chrX	210759	.	G	C	1172	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.90;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1205,135,0
chrX	210834	.	A	G	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=71;Dels=0.00;FS=7.928;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.841;QD=19.38;ReadPosRankSum=2.379;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:2,67:71:99:1409,156,0
chrX	210923	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.70;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1482,165,0
chrX	210936	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.82;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1532,165,0
chrX	211104	.	A	G	2221	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=21.77;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2254,246,0
chrX	211107	.	G	T	2232	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.46;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2265,246,0
chrX	211226	.	A	T	2729	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.37;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2762,303,0
chrX	211287	.	T	C	2190	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.209;QD=18.72;ReadPosRankSum=-0.388;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2223,252,0
chrX	211319	.	T	C	1575	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=16.24;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1608,171,0
chrX	211322	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=16.32;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1600,171,0
chrX	211343	.	T	C	753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;MQRankSum=-1.498;QD=10.18;ReadPosRankSum=1.639;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:90:786,90,0
chrX	211345	.	G	A	738	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=10.11;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:84:771,84,0
chrX	211421	.	C	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=18.35;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1611,168,0
chrX	211498	.	T	C	2508	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.73;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2541,276,0
chrX	211638	.	A	T	2456	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.5242;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.97;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2489,267,0
chrX	211764	.	C	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.7911;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.53;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1939,207,0
chrX	211845	.	C	A	2240	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.65;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2273,252,0
chrX	211863	.	C	T	2408	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=21.31;SB=-1.518e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2441,258,0
chrX	211924	.	T	A	1823	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.02;FS=0.000;HaplotypeScore=6.7431;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=16.88;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1856,195,0
chrX	211937	.	A	G	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=100;Dels=0.00;FS=8.551;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=-0.968;QD=18.82;ReadPosRankSum=3.368;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:4,95:100:99:1915,210,0
chrX	212108	.	A	G	1692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.417;QD=19.23;ReadPosRankSum=1.653;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1725,189,0
chrX	212471	.	C	T	2306	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.96;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2339,258,0
chrX	212671	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.29;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1364,144,0
chrX	213175	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.54;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1491,162,0
chrX	213509	.	C	A	2396	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.04;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2429,258,0
chrX	213641	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1543,162,0
chrX	213827	.	C	T	3475.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=14.4468;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.64;SB=-1.901e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3475,366,0
chrX	213944	.	C	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.20;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1178,129,0
chrX	214033	.	C	T	1934	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.49;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1967,210,0
chrX	214163	.	A	G	1954	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.14;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1987,222,0
chrX	214698	.	A	G	1681	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=3.327;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.952;QD=23.35;ReadPosRankSum=1.683;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1714,189,0
chrX	214997	.	G	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.90;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1068,114,0
chrX	215069	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.96;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1614,168,0
chrX	215224	.	A	G	2153	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.43;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2186,234,0
chrX	215249	.	T	C	1829	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=3.324;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.886;QD=20.78;ReadPosRankSum=1.692;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1862,204,0
chrX	215426	.	A	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=24.31;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1613,180,0
chrX	215480	.	G	A	1290	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.25;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1323,147,0
chrX	215481	.	G	A	1362	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.33;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1395,144,0
chrX	215482	.	T	C	1322	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.03;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1355,147,0
chrX	215637	.	A	G	1966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3345;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.737;QD=20.91;ReadPosRankSum=1.658;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1999,219,0
chrX	215951	.	G	A	2557	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.59;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2590,267,0
chrX	215960	.	C	T	2665	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.58;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2698,285,0
chrX	216038	.	C	T	2082	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.02;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2115,228,0
chrX	216132	.	A	C	4324.01	PASS	AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=8.5845;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.02;SB=-2.156e+03	GT:AD:DP:GQ:PL	1/1:0,179:180:99:4324,477,0
chrX	216313	.	G	A	2469	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.75;SB=-1.466e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2502,264,0
chrX	216422	.	G	A	2516	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.69;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2549,267,0
chrX	216509	.	A	G	2724	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.11;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2757,300,0
chrX	217028	.	C	T	1953	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=17.59;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:1986,219,0
chrX	217367	.	T	C	1273	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=66;Dels=0.00;FS=9.678;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.842;QD=19.29;ReadPosRankSum=2.375;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1306,144,0
chrX	217550	.	G	A	3907.01	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=7.7008;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=23.40;SB=-1.804e+03	GT:AD:DP:GQ:PL	1/1:0,165:167:99:3907,412,0
chrX	218068	.	A	G	1659	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.27;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1692,189,0
chrX	218107	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.67;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1200,132,0
chrX	218143	.	A	G	1208	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;MQRankSum=-0.841;QD=17.26;ReadPosRankSum=1.683;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1241,135,0
chrX	218146	.	T	C	1165	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=16.88;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1198,132,0
chrX	218152	.	C	T	1277	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=17.49;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1310,138,0
chrX	218206	.	T	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.19;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1343,150,0
chrX	218293	.	C	T	1640	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=19.29;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1673,186,0
chrX	218308	.	G	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=19.20;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,77:81:99:1588,171,0
chrX	218340	.	G	A	1092	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.50;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1125,120,0
chrX	218503	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.5219;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.382;QD=19.58;ReadPosRankSum=1.674;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1188,126,0
chrX	218719	.	G	A	1246	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.47;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1279,135,0
chrX	218728	.	G	A	1046	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=16.09;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1079,114,0
chrX	218964	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.677;QD=15.50;ReadPosRankSum=1.677;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1025,114,0
chrX	219051	.	T	C	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=61;Dels=0.00;FS=10.682;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=0.034;QD=16.46;ReadPosRankSum=2.883;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:3,57:61:99:1037,114,0
chrX	219066	.	T	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.51;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1477,159,0
chrX	219267	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1487,159,0
chrX	219324	.	T	C	786	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.65;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:93:819,93,0
chrX	219354	.	A	C	1055	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.10;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1088,123,0
chrX	219419	.	C	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.16;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1159,123,0
chrX	219452	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.01;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1307,138,0
chrX	219542	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.270;QD=18.68;ReadPosRankSum=1.127;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1322,144,0
chrX	219727	.	T	C	1863	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.17;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1896,204,0
chrX	219735	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.84;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1691,189,0
chrX	219914	.	G	A	2389	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.92;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2422,285,0
chrX	219997	.	T	C	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=9.150;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.609;QD=15.28;ReadPosRankSum=1.685;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1179,132,0
chrX	220326	.	C	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.70;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1068,114,0
chrX	220333	.	G	C	934	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.30;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:967,108,0
chrX	220447	.	A	G	901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.051;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=-0.926;QD=13.25;ReadPosRankSum=2.377;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:934,99,0
chrX	220448	.	A	G	878	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-1.733;QD=13.30;ReadPosRankSum=3.319;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:4,62:66:99:911,99,0
chrX	220459	.	C	A	961	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=0;QD=15.02;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:994,105,0
chrX	220469	.	A	T	767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;MQRankSum=0.619;QD=13.70;ReadPosRankSum=1.670;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:87:800,87,0
chrX	220502	.	T	C	649	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.4091;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=13.81;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:75:682,75,0
chrX	220527	.	T	A	603	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.45;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:66:636,66,0
chrX	220622	.	G	C	953	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.33;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:986,108,0
chrX	220746	.	C	T	932	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.18;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:965,105,0
chrX	220756	.	T	A	1001	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.85;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1034,114,0
chrX	220988	.	T	A	1457	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.43;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1490,156,0
chrX	221323	.	C	T	3411.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.85;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:3411,363,0
chrX	221432	.	G	C	1607	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.9331;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.60;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1640,183,0
chrX	221727	.	G	A	1663	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.78;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1696,180,0
chrX	222067	.	T	G	867	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.64;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:99:900,99,0
chrX	222202	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.91;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1428,150,0
chrX	222376	.	T	C	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.660;QD=22.29;ReadPosRankSum=1.650;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:969,105,0
chrX	222574	.	C	T	2069	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.34;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2102,222,0
chrX	222634	.	A	G	1491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=65;Dels=0.00;FS=7.728;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.969;QD=22.94;ReadPosRankSum=2.298;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1524,168,0
chrX	223295	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=14.85;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1102,120,0
chrX	223465	.	C	T	3893.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.88;SB=-1.949e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3893,409,0
chrX	223491	.	C	T	3164	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.28;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:3197,345,0
chrX	223746	.	C	T	2346	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.34;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2379,252,0
chrX	225165	.	G	A	1394	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=9.0449;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.34;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1427,159,0
chrX	225521	.	A	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.36;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1175,129,0
chrX	225601	.	A	G	1982	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=89;Dels=0.00;FS=2.966;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.260;QD=22.27;ReadPosRankSum=2.394;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:2,87:89:99:2015,219,0
chrX	225792	.	A	G	1378	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.20;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1411,159,0
chrX	225914	.	T	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.66;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1289,141,0
chrX	226023	.	G	A	2676	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=12.0204;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.25;SB=-1.712e+03	GT:AD:DP:GQ:PL	1/1:0,136:139:99:2709,285,0
chrX	226353	.	T	C	2014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.546;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.479;QD=21.43;ReadPosRankSum=1.695;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2047,228,0
chrX	226665	.	C	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6921;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.07;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1330,147,0
chrX	226843	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1497,165,0
chrX	226899	.	A	G	1355	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.21;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1388,156,0
chrX	227070	.	A	G	902	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.624;QD=18.04;ReadPosRankSum=1.663;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:935,102,0
chrX	227303	.	A	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.21;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1292,135,0
chrX	227829	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.39;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1320,147,0
chrX	227961	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.67;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1680,177,0
chrX	228044	.	A	T	1606	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.70;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1639,177,0
chrX	228198	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.48;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1606,174,0
chrX	228732	.	A	G	764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.042;QD=18.63;ReadPosRankSum=1.648;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:90:797,90,0
chrX	228740	.	T	C	799	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.49;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:832,90,0
chrX	228756	.	A	G	789	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.53;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:822,90,0
chrX	228793	.	A	T	1026	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.10;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1059,117,0
chrX	228805	.	G	T	1021	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=17.60;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1054,114,0
chrX	228996	.	T	A	1512	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.213;QD=24.79;ReadPosRankSum=1.617;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1545,159,0
chrX	229175	.	C	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.55;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1606,171,0
chrX	229271	.	A	G	2182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=99;Dels=0.00;FS=9.113;HaplotypeScore=5.9248;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.783;QD=22.04;ReadPosRankSum=2.301;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:2215,252,0
chrX	229547	.	C	T	2951	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.70;SB=-1.461e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2984,315,0
chrX	229650	.	G	A	2659	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.53;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2692,279,0
chrX	230069	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.12;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1421,156,0
chrX	230256	.	T	G	1515	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=19.68;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1548,171,0
chrX	230257	.	C	T	1489	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=19.85;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1522,162,0
chrX	230372	.	C	T	1709	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.35;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1742,183,0
chrX	230438	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=70;Dels=0.00;FS=6.748;HaplotypeScore=7.3742;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.341;QD=21.03;ReadPosRankSum=2.379;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:2,67:70:99:1505,165,0
chrX	230464	.	G	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.18;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1433,159,0
chrX	230470	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=18.87;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1486,162,0
chrX	230603	.	T	A	2226	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6098;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.04;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2259,237,0
chrX	230666	.	C	T	1974	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.23;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2007,213,0
chrX	230768	.	G	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.02;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1314,141,0
chrX	230867	.	T	C	2040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=101;Dels=0.00;FS=7.895;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-0.012;QD=20.20;ReadPosRankSum=2.377;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:2,99:101:99:2073,231,0
chrX	231314	.	A	G	2069	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.55;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2102,234,0
chrX	231417	.	T	G	1609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=4.461;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.304;QD=19.62;ReadPosRankSum=1.647;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1642,183,0
chrX	231525	.	C	T	1496	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7734;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.68;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1529,174,0
chrX	231610	.	C	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.60;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1437,150,0
chrX	231816	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.48;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1395,147,0
chrX	232272	.	T	C	963	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.26;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:996,111,0
chrX	232348	.	T	C	864	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.57;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:897,96,0
chrX	232467	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.00;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1229,132,0
chrX	232656	.	A	G	729	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.57;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:762,84,0
chrX	232663	.	G	A	806	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=16.12;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:96:839,96,0
chrX	233083	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.51;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1403,147,0
chrX	233256	.	C	T	1290	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1323,138,0
chrX	233289	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3155;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1660,180,0
chrX	233446	.	C	T	1716	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.00;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1749,186,0
chrX	233472	.	G	A	1300	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.67;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1333,150,0
chrX	233503	.	C	T	1495	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.73;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1528,159,0
chrX	233551	.	C	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.20;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1121,120,0
chrX	233724	.	C	G	1310	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1343,153,0
chrX	233808	.	T	C	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=3.222;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.495;QD=21.29;ReadPosRankSum=1.691;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,83:86:99:1864,204,0
chrX	233923	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=21.55;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1089,114,0
chrX	233924	.	A	C	1003	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.06;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1036,114,0
chrX	234309	.	G	A	1511	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.90;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1544,165,0
chrX	234413	.	T	C	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.850;QD=22.85;ReadPosRankSum=1.669;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1290,141,0
chrX	234627	.	G	T	2147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.615;QD=23.09;ReadPosRankSum=-0.503;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2180,211,0
chrX	234824	.	G	A	2222	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.67;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2255,252,0
chrX	235091	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.48;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1569,165,0
chrX	235232	.	G	A	2062	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=16.63;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2095,228,0
chrX	235235	.	A	G	2056	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.88;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2089,228,0
chrX	235355	.	T	C	2119	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.77;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2152,237,0
chrX	235362	.	G	T	2034	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.76;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2067,222,0
chrX	235475	.	T	C	1103	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=58;Dels=0.00;FS=7.412;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.064;QD=19.02;ReadPosRankSum=2.195;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1136,126,0
chrX	235604	.	A	C	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=12.1373;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.523;QD=16.30;ReadPosRankSum=1.690;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1386,153,0
chrX	235988	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=0.433;QD=22.90;ReadPosRankSum=1.684;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1682,180,0
chrX	236081	.	A	G	1167	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.13;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1200,132,0
chrX	236421	.	T	C	1897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=5.740;HaplotypeScore=76.6140;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-0.346;QD=21.08;ReadPosRankSum=1.232;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1930,213,0
chrX	236901	.	T	A	765	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=14.43;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:798,84,0
chrX	236905	.	A	G	724	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=13.66;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:757,84,0
chrX	236912	.	A	G	895	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=14.67;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:928,102,0
chrX	237017	.	A	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;QD=18.58;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1594,180,0
chrX	237020	.	G	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=15.78;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1406,153,0
chrX	237032	.	G	C	1034	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=14.77;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1067,117,0
chrX	237035	.	T	G	995	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=14.42;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1028,114,0
chrX	237161	.	C	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.84;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1660,180,0
chrX	237366	.	G	A	883	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=16.98;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:916,102,0
chrX	237399	.	C	G	851	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=14.42;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:884,102,0
chrX	237403	.	G	A	910	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=15.42;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:943,105,0
chrX	237670	.	A	G	1887	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3356;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.94;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1920,207,0
chrX	237691	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.37;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1683,177,0
chrX	237740	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=17.89;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1017,114,0
chrX	237784	.	G	A	860	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.30;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:893,96,0
chrX	237787	.	C	T	877	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.93;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:910,96,0
chrX	238262	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.35;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1186,129,0
chrX	238334	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.21;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1221,132,0
chrX	238356	.	G	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=23.13;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1467,162,0
chrX	238393	.	T	C	1688	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.725;DP=77;Dels=0.00;FS=5.573;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.039;QD=21.92;ReadPosRankSum=2.909;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1721,189,0
chrX	238463	.	T	C	1982	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.02;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2015,222,0
chrX	238660	.	G	C	1339	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.60;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1372,150,0
chrX	238732	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.031;QD=20.67;ReadPosRankSum=1.608;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1769,198,0
chrX	238738	.	A	G	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.571;QD=19.36;ReadPosRankSum=1.652;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:1,85:88:99:1737,192,0
chrX	238867	.	T	C	1348	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.82;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1381,153,0
chrX	238933	.	T	C	1545	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.0644;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.46;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1578,171,0
chrX	238948	.	A	G	1437	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3995;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.66;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1470,165,0
chrX	238968	.	A	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=18.17;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1341,147,0
chrX	239145	.	C	T	2146	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.46;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2179,234,0
chrX	239361	.	C	T	2208	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.30;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2241,243,0
chrX	239387	.	C	G	2081	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.38;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2114,231,0
chrX	239807	.	T	C	1739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.215;QD=19.76;ReadPosRankSum=1.653;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1772,195,0
chrX	239917	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.4890;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.36;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1229,129,0
chrX	239955	.	C	T	833	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.37;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:96:866,96,0
chrX	239959	.	T	C	840	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.09;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:96:873,96,0
chrX	240040	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.45;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1025,111,0
chrX	240082	.	C	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.75;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1257,138,0
chrX	240199	.	A	G	1474	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.00;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1507,171,0
chrX	240364	.	T	G	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=2.658;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.461;QD=20.39;ReadPosRankSum=2.376;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1399,159,0
chrX	240400	.	A	C	1492	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.62;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1525,168,0
chrX	240695	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.87;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1722,186,0
chrX	240712	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.66;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1920,213,0
chrX	240782	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.70;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1432,156,0
chrX	240847	.	T	C	1823	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.79;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1856,207,0
chrX	241109	.	A	G	2087	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.74;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2120,234,0
chrX	241420	.	A	G	2637	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.54;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2670,291,0
chrX	242557	.	A	C	2308	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.77;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2341,264,0
chrX	243161	.	T	C	1121	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.56;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1154,126,0
chrX	243197	.	A	G	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.565;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.455;QD=22.45;ReadPosRankSum=1.594;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1739,192,0
chrX	243812	.	C	A	2602	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.23;SB=-1.371e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2635,279,0
chrX	243876	.	G	A	2255	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.358e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2288,240,0
chrX	243992	.	A	G	1819	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.92;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1852,198,0
chrX	244497	.	T	C	2335	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1694;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.14;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2368,261,0
chrX	244538	.	A	G	2458	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.15;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2491,267,0
chrX	244608	.	G	A	1755	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=14.75;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:1788,195,0
chrX	244609	.	G	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=15.94;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:1882,201,0
chrX	244637	.	T	C	2316	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=132;Dels=0.00;FS=4.452;HaplotypeScore=7.9737;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-0.674;QD=17.55;ReadPosRankSum=1.706;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:1,130:132:99:2349,252,0
chrX	244726	.	A	G	1850	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.33;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1883,207,0
chrX	245387	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=25.44;SB=-2.050e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1305,138,0
chrX	245427	.	G	A	745	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.91;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:90:778,90,0
chrX	245436	.	T	C	602	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.76;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,28:29:69:635,69,0
chrX	245516	.	C	A	1126	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.46;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1159,123,0
chrX	247938	.	T	G	1030	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.39;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1063,120,0
chrX	248169	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=6.021;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.070;QD=22.29;ReadPosRankSum=1.681;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1549,168,0
chrX	248312	.	G	A	714	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=14.57;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:78:747,78,0
chrX	248329	.	C	T	852	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=15.78;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:96:885,96,0
chrX	248378	.	G	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.35;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1233,135,0
chrX	248878	.	C	A	2115	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.99;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2148,228,0
chrX	248957	.	G	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.9385;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.17;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1910,201,0
chrX	249343	.	G	A	793	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.62;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:826,90,0
chrX	249923	.	T	C	1109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.824;QD=18.18;ReadPosRankSum=1.505;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1142,123,0
chrX	250151	.	T	C	1008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.062;QD=18.00;ReadPosRankSum=1.670;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1041,117,0
chrX	250174	.	G	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.97;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1190,126,0
chrX	250241	.	A	G	1739	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.6561;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=22.29;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1772,192,0
chrX	250517	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.144;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.522;QD=19.73;ReadPosRankSum=1.680;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1335,147,0
chrX	250585	.	G	A	1963	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.57;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,87:91:99:1996,210,0
chrX	251864	.	C	A	2258	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4442;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.36;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2291,243,0
chrX	252564	.	T	C	1729	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.12;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1762,201,0
chrX	252640	.	G	C	1694	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.89;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1727,189,0
chrX	253940	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2355;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.53;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1439,159,0
chrX	254075	.	A	G	1918	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.08;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1951,213,0
chrX	254247	.	T	C	1012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=3.819;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.360;QD=19.09;ReadPosRankSum=1.667;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1045,114,0
chrX	254957	.	T	C	947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=3.565;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-1.247;QD=18.57;ReadPosRankSum=1.663;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:980,111,0
chrX	255209	.	T	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1467,153,0
chrX	255640	.	A	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.71;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1392,147,0
chrX	256371	.	G	A	3295.01	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.96;SB=-1.631e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3295,354,0
chrX	256964	.	A	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.88;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1703,189,0
chrX	257035	.	G	A	2294	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.95;SB=-1.398e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2327,246,0
chrX	257445	.	G	T	1427	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.82;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1460,153,0
chrX	258025	.	T	C	1981	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.53;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2014,222,0
chrX	258142	.	G	A	2052	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=19.0524;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.36;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2085,222,0
chrX	258292	.	G	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.72;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1883,201,0
chrX	259182	.	C	T	1289	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.44;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1322,141,0
chrX	259345	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3644;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.42;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:991,111,0
chrX	259357	.	G	A	987	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.35;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1020,108,0
chrX	260031	.	A	G	812	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.56;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:93:845,93,0
chrX	260203	.	G	T	1760	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.47;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1793,192,0
chrX	260294	.	T	C	1041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-0.577;QD=14.87;ReadPosRankSum=1.632;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1074,117,0
chrX	260320	.	T	C	744	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=14.59;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:87:777,87,0
chrX	260357	.	G	C	824	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.73;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:857,93,0
chrX	260627	.	A	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.17;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1962,210,0
chrX	260920	.	C	T	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=69;Dels=0.00;FS=4.901;HaplotypeScore=6.0917;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.630;QD=20.96;ReadPosRankSum=1.630;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1479,165,0
chrX	261296	.	C	A	1252	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1285,138,0
chrX	261413	.	A	G	819	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=3.869;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.377;QD=21.00;ReadPosRankSum=0.400;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:93:852,93,0
chrX	261474	.	C	G	737	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.92;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:770,84,0
chrX	261812	.	A	G	610	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.06;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:72:643,72,0
chrX	261829	.	G	A	825	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=19.19;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:858,90,0
chrX	261902	.	C	T	1793	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.14;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1826,201,0
chrX	262115	.	A	G	1352	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.92;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1385,150,0
chrX	262236	.	G	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.25;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1620,180,0
chrX	262403	.	A	T	2071	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.27;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2104,225,0
chrX	262565	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.506;QD=19.65;ReadPosRankSum=1.679;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1310,147,0
chrX	262898	.	A	G	1195	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=20.96;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1228,135,0
chrX	262995	.	G	A	1285	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.62;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1318,147,0
chrX	263201	.	A	G	1733	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.5474;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.94;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1766,192,0
chrX	263508	.	C	T	2247	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.93;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2280,243,0
chrX	263540	.	C	A	1990	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.63;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2023,225,0
chrX	263687	.	G	A	2471	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.76;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2504,267,0
chrX	263723	.	G	T	1910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=3.488;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.144;QD=19.49;ReadPosRankSum=0.505;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:1943,210,0
chrX	264194	.	T	C	1733	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.15;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1766,195,0
chrX	264272	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.79;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1711,183,0
chrX	264413	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.58;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1482,165,0
chrX	264752	.	G	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.92;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1775,198,0
chrX	264790	.	A	G	1834	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.37;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1867,204,0
chrX	264838	.	G	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.06;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1710,183,0
chrX	264860	.	G	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.56;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1518,159,0
chrX	265316	.	G	A	2620	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.95;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,146:146:99:2653,282,0
chrX	265321	.	C	T	2267	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=15.74;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,142:144:99:2300,267,0
chrX	265353	.	A	G	3355.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.168;QD=19.97;ReadPosRankSum=2.406;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:2,166:168:99:3355,369,0
chrX	265414	.	C	A	3314.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.66;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,151:153:99:3314,348,0
chrX	265456	.	A	T	2470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0885;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-2.147;QD=18.71;ReadPosRankSum=2.374;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:2,130:132:99:2503,264,0
chrX	265464	.	G	A	2247	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.42;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2280,249,0
chrX	265530	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.697;DP=90;Dels=0.00;FS=5.294;HaplotypeScore=14.4722;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.281;QD=20.87;ReadPosRankSum=2.877;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:3,87:90:99:1911,188,0
chrX	265783	.	A	G	993	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.10;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1026,111,0
chrX	266229	.	A	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=23.45;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1182,126,0
chrX	266253	.	G	A	1127	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.67;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1160,126,0
chrX	266273	.	C	T	1117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622;DP=63;Dels=0.00;FS=4.376;HaplotypeScore=2.7778;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=1.072;QD=17.73;ReadPosRankSum=1.512;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1150,129,0
chrX	266570	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.489;QD=23.95;ReadPosRankSum=1.672;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1398,153,0
chrX	266741	.	T	A	574	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.26;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:66:607,66,0
chrX	267241	.	T	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.10;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1835,201,0
chrX	267355	.	A	C	1213	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.46;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1246,138,0
chrX	267452	.	C	T	1267	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1300,138,0
chrX	267890	.	G	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.10;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1858,204,0
chrX	267977	.	A	G	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=0.801;QD=21.93;ReadPosRankSum=1.577;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1502,165,0
chrX	268004	.	C	T	1385	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.98;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1418,150,0
chrX	269314	.	T	C	2489	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.26;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2522,276,0
chrX	269458	.	G	T	1596	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.13;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1629,180,0
chrX	269512	.	G	A	1708	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.47;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1741,186,0
chrX	269747	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.07;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1217,135,0
chrX	269832	.	T	C	2888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=140;Dels=0.00;FS=4.740;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.559;QD=20.63;ReadPosRankSum=1.707;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,139:140:99:2921,312,0
chrX	269989	.	G	A	1263	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.83;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1296,138,0
chrX	270131	.	A	G	2053	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.56;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2086,231,0
chrX	270317	.	C	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.22;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1359,156,0
chrX	272191	.	T	C	1830	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.79;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1863,204,0
chrX	272847	.	T	C	1385	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.98;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1418,156,0
chrX	273652	.	T	C	1977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=4.001;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.160;QD=19.19;ReadPosRankSum=1.665;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2010,216,0
chrX	273813	.	A	G	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.020;QD=22.07;ReadPosRankSum=1.692;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1953,216,0
chrX	273972	.	C	T	2220	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.5018;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.89;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2253,243,0
chrX	274173	.	A	G	2445	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.97;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2478,282,0
chrX	274203	.	T	C	1922	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.88;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1955,216,0
chrX	275124	.	A	G	1990	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.14;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:2023,228,0
chrX	275495	.	C	T	1632	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.4639;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.19;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1665,174,0
chrX	275537	.	T	C	1279	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=16.83;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1312,144,0
chrX	275542	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.63;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1430,150,0
chrX	275588	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=16.93;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1320,141,0
chrX	275597	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=69;Dels=0.00;FS=3.882;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=0.315;QD=16.87;ReadPosRankSum=1.680;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,65:69:99:1197,135,0
chrX	275752	.	A	C	1875	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.60;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1908,210,0
chrX	276524	.	T	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.96;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1171,132,0
chrX	276539	.	A	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.54;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1261,144,0
chrX	276704	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=3.748;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.029;QD=20.17;ReadPosRankSum=1.678;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1324,144,0
chrX	277044	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.69;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1553,165,0
chrX	277400	.	T	G	847	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:880,99,0
chrX	277465	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1141,129,0
chrX	277623	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=21.13;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1174,129,0
chrX	277760	.	C	T	1409	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.6830;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.02;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1442,150,0
chrX	278226	.	A	T	1226	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.43;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1259,132,0
chrX	279703	.	G	A	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.059;QD=24.87;ReadPosRankSum=1.684;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1824,201,0
chrX	280534	.	T	C	574	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.72;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:607,69,0
chrX	280929	.	C	T	716	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=18.36;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:749,81,0
chrX	281003	.	T	C	2330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=3.513;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.917;QD=19.58;ReadPosRankSum=1.674;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2363,258,0
chrX	281006	.	C	A	2552	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.09;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2585,270,0
chrX	281056	.	T	C	3284.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=161;Dels=0.00;FS=3.029;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.750;QD=20.40;ReadPosRankSum=2.419;SB=-1.974e+03	GT:AD:DP:GQ:PL	1/1:2,157:161:99:3284,360,0
chrX	282738	.	A	G	775	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.90;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:808,90,0
chrX	283605	.	C	G	1941	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.31;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1974,225,0
chrX	284309	.	C	T	672	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=14.93;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:705,75,0
chrX	284564	.	T	C	831	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.31;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:864,93,0
chrX	287737	.	C	T	1557	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.33;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1590,171,0
chrX	287781	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.10;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1408,159,0
chrX	288142	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.77;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1338,147,0
chrX	288319	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.11;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1194,135,0
chrX	288609	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.03;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1346,144,0
chrX	288768	.	G	A	1689	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.19;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1722,183,0
chrX	290561	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.16;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1651,174,0
chrX	290883	.	G	A	1605	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.93;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1638,174,0
chrX	290969	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=2.999;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;MQRankSum=-1.278;QD=17.74;ReadPosRankSum=2.270;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1488,165,0
chrX	290972	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=17.06;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1432,156,0
chrX	291073	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.05;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1347,153,0
chrX	291165	.	T	C	663	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.073;QD=15.79;ReadPosRankSum=1.650;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:78:696,78,0
chrX	291251	.	T	A	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=1.107;QD=18.71;ReadPosRankSum=1.684;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1380,147,0
chrX	291269	.	G	A	1300	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=19.40;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1333,141,0
chrX	291405	.	G	A	1859	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=10.2552;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=21.37;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1892,210,0
chrX	291438	.	A	G	1350	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.57;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1383,153,0
chrX	291807	.	A	G	1449	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.32;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1482,171,0
chrX	291846	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=19.29;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1441,162,0
chrX	291863	.	T	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.50;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1203,129,0
chrX	291927	.	G	A	1204	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.42;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1237,138,0
chrX	291961	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.59;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1569,165,0
chrX	292117	.	A	G	1874	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-0.744;QD=20.15;ReadPosRankSum=2.396;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:2,89:93:99:1907,210,0
chrX	292170	.	A	T	1576	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=19.95;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1609,171,0
chrX	292273	.	G	T	864	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=18.78;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:897,99,0
chrX	292310	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.06;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1056,117,0
chrX	292331	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=58;Dels=0.00;FS=4.058;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.062;QD=19.07;ReadPosRankSum=1.670;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1139,129,0
chrX	292376	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.80;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1221,138,0
chrX	292518	.	A	T	1183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=59;Dels=0.00;FS=4.135;HaplotypeScore=6.8927;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;MQRankSum=-0.091;QD=20.05;ReadPosRankSum=1.672;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1216,129,0
chrX	292540	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.68;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1155,123,0
chrX	292551	.	T	A	1014	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.48;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1047,120,0
chrX	292616	.	T	C	704	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.60;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:84:737,84,0
chrX	292672	.	A	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=19.47;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1065,117,0
chrX	292848	.	T	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=21.40;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1360,144,0
chrX	292851	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=4.281;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=1.319;QD=18.48;ReadPosRankSum=1.577;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1271,144,0
chrX	292930	.	T	C	1540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;MQRankSum=0.464;QD=21.39;ReadPosRankSum=1.635;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1573,174,0
chrX	292958	.	T	C	1455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=3.041;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;MQRankSum=-0.505;QD=21.72;ReadPosRankSum=2.301;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:99:1488,168,0
chrX	293070	.	G	A	753	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.28;MQ0=0;QD=17.11;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:786,87,0
chrX	293080	.	G	A	616	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.93;MQ0=0;QD=14.67;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:69:649,69,0
chrX	293099	.	C	A	96.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=4.430;DP=73;Dels=0.00;FS=2.621;HaplotypeScore=44.4045;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;MQRankSum=1.604;QD=1.32;ReadPosRankSum=1.918;SB=-4.013e+02	GT:AD:DP:GQ:PL	1/1:15,58:73:15:129,15,0
chrX	293102	.	C	A	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.071;DP=78;Dels=0.00;FS=5.797;HaplotypeScore=48.3693;MLEAC=1;MLEAF=0.500;MQ=28.63;MQ0=0;MQRankSum=-0.608;QD=0.50;ReadPosRankSum=-2.501;SB=-8.601e+01	GT:AD:DP:GQ:PL	0/1:39,22:78:40:69,0,40
chrX	293105	.	C	T	53.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=81;Dels=0.00;FS=3.141;HaplotypeScore=48.3693;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=0;MQRankSum=0.307;QD=0.65;ReadPosRankSum=-2.225;SB=-2.420e+02	GT:AD:DP:GQ:PL	0/1:41,40:81:37:83,0,37
chrX	293117	.	T	C	44.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=23.4441;MLEAC=1;MLEAF=0.500;MQ=30.17;MQ0=0;MQRankSum=0.484;QD=0.50;ReadPosRankSum=-0.616;SB=-1.450e+02	GT:AD:DP:GQ:PL	0/1:61,26:88:74:74,0,103
chrX	293118	.	A	T	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.407;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=23.4441;MLEAC=1;MLEAF=0.500;MQ=30.17;MQ0=0;MQRankSum=-1.596;QD=0.26;ReadPosRankSum=0.123;SB=-1.760e+02	GT:AD:DP:GQ:PL	0/1:62,26:88:53:53,0,116
chrX	293119	.	G	A	36.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.097;DP=89;Dels=0.00;FS=4.983;HaplotypeScore=23.4441;MLEAC=1;MLEAF=0.500;MQ=30.15;MQ0=0;MQRankSum=-0.567;QD=0.40;ReadPosRankSum=2.010;SB=-8.001e+01	GT:AD:DP:GQ:PL	0/1:66,23:89:66:66,0,150
chrX	293121	.	G	A	67.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;DP=91;Dels=0.00;FS=0.886;HaplotypeScore=23.4441;MLEAC=1;MLEAF=0.500;MQ=30.86;MQ0=0;MQRankSum=0.086;QD=0.74;ReadPosRankSum=0.518;SB=-1.710e+02	GT:AD:DP:GQ:PL	0/1:62,29:91:97:97,0,110
chrX	293133	.	G	A	127.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;DP=90;Dels=0.00;FS=0.941;HaplotypeScore=23.6563;MLEAC=1;MLEAF=0.500;MQ=32.54;MQ0=0;MQRankSum=1.200;QD=1.42;ReadPosRankSum=4.856;SB=-1.898e+02	GT:AD:DP:GQ:PL	0/1:32,34:90:27:156,0,27
chrX	293142	.	C	A	61.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.240;DP=97;Dels=0.00;FS=1.734;HaplotypeScore=24.4449;MLEAC=1;MLEAF=0.500;MQ=32.92;MQ0=0;MQRankSum=-0.700;QD=0.63;ReadPosRankSum=-7.007;SB=-4.170e+02	GT:AD:DP:GQ:PL	0/1:43,53:97:91:91,0,239
chrX	293271	.	T	C	787	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=16.40;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:820,93,0
chrX	293436	.	G	A	682	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=19.49;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:715,78,0
chrX	293442	.	G	T	687	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=20.21;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:720,78,0
chrX	293475	.	T	C	275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=18.9318;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=0.578;QD=11.46;ReadPosRankSum=1.589;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:1,23:24:36:308,36,0
chrX	293490	.	A	T	157.06	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=7.85;SB=-5.107e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:21:190,21,0
chrX	293499	.	A	G	199.01	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=6.63;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:27:232,27,0
chrX	293502	.	T	C	278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.90;MQ0=0;MQRankSum=-1.631;QD=8.18;ReadPosRankSum=1.631;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:36:311,36,0
chrX	293517	.	T	C	524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;MQRankSum=-1.732;QD=11.39;ReadPosRankSum=1.582;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:63:557,63,0
chrX	293541	.	A	G	444	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;QD=10.57;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:477,54,0
chrX	293664	.	T	C	1011	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.44;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1044,117,0
chrX	293700	.	G	A	750	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.05;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:783,84,0
chrX	293718	.	T	C	677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=1.237;QD=13.82;ReadPosRankSum=1.520;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:78:710,78,0
chrX	293940	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.42;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1175,129,0
chrX	293985	.	C	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.84;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1182,126,0
chrX	294039	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.777;QD=20.40;ReadPosRankSum=1.673;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1216,135,0
chrX	294093	.	C	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.80;MQ0=0;QD=22.51;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1091,114,0
chrX	294232	.	G	A	648	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=20.90;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:72:681,72,0
chrX	294234	.	G	A	543	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=19.39;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:63:576,63,0
chrX	294333	.	T	A	570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.4540;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-2.075;QD=16.76;ReadPosRankSum=0.566;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:2,31:34:63:603,63,0
chrX	294344	.	T	C	435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=31;Dels=0.00;FS=3.452;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.727;QD=14.03;ReadPosRankSum=1.621;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:51:468,51,0
chrX	294416	.	A	G	599	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=15.76;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:632,69,0
chrX	294429	.	T	C	611	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=16.08;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:644,72,0
chrX	294473	.	G	A	53.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=47;Dels=0.00;FS=4.201;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.904;QD=1.15;ReadPosRankSum=5.863;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:23,24:47:9:86,9,0
chrX	294494	.	C	T	100.26	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;QD=2.95;SB=-3.613e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:15:133,15,0
chrX	294549	.	T	G	926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=59;Dels=0.00;FS=5.431;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=-0.558;QD=15.69;ReadPosRankSum=3.302;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:4,55:59:99:959,111,0
chrX	294578	.	A	T	1256	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=21.29;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1289,141,0
chrX	294584	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=19.02;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1212,132,0
chrX	294608	.	A	G	1319	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=19.40;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1352,159,0
chrX	294792	.	C	T	943	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=19.65;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:976,108,0
chrX	294826	.	G	A	793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;MQRankSum=0.282;QD=18.44;ReadPosRankSum=1.652;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:93:826,93,0
chrX	294827	.	A	G	787	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=17.89;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:820,93,0
chrX	294920	.	T	G	12.99	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=62.8657;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;MQRankSum=0.129;QD=0.19;ReadPosRankSum=1.163;SB=-7.268e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:6:44,6,0
chrX	294947	.	G	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=15.77;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1610,171,0
chrX	294972	.	T	A	1566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=100;Dels=0.01;FS=3.147;HaplotypeScore=14.9447;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=-0.804;QD=15.66;ReadPosRankSum=1.696;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1599,168,0
chrX	295057	.	T	A	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=91;Dels=0.00;FS=7.653;HaplotypeScore=11.8027;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.068;QD=21.29;ReadPosRankSum=2.369;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1970,207,0
chrX	295148	.	C	T	1478	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=16.3780;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.19;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1511,159,0
chrX	295154	.	C	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.76;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1600,168,0
chrX	295184	.	C	T	1386	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.38;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1419,150,0
chrX	295294	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=-1.137;QD=18.12;ReadPosRankSum=1.570;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1193,135,0
chrX	295430	.	G	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.90;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1476,156,0
chrX	295604	.	T	C	1848	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.76;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1881,204,0
chrX	295652	.	A	G	1540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=74;Dels=0.00;FS=10.749;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.521;QD=20.81;ReadPosRankSum=2.850;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1573,168,0
chrX	295979	.	G	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=16.88;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1046,111,0
chrX	296106	.	A	T	1082	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.990;QD=18.98;ReadPosRankSum=1.670;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1115,120,0
chrX	296872	.	T	A	1444	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=10.9352;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.540;QD=20.06;ReadPosRankSum=0.481;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1477,156,0
chrX	297043	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.56;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1054,114,0
chrX	297050	.	T	G	920	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.73;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:953,108,0
chrX	297116	.	G	T	919	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=17.67;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:952,102,0
chrX	297296	.	T	A	965	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.30;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:998,108,0
chrX	297618	.	A	G	1217	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.98;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1250,135,0
chrX	297650	.	T	C	1206	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.33;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1239,138,0
chrX	297688	.	C	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.10;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1489,156,0
chrX	297732	.	T	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.28;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1120,123,0
chrX	297800	.	G	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.32;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1199,126,0
chrX	297848	.	A	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.43;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1222,135,0
chrX	297976	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.08;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1395,147,0
chrX	298390	.	C	A	980	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.78;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1013,108,0
chrX	298682	.	T	G	1153	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.321;QD=19.54;ReadPosRankSum=1.615;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1186,135,0
chrX	298833	.	G	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.84;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1909,213,0
chrX	298890	.	T	C	1973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=93;Dels=0.00;FS=6.463;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=-0.764;QD=21.22;ReadPosRankSum=1.658;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2006,219,0
chrX	298915	.	C	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.21;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1857,207,0
chrX	299141	.	T	C	2108	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=25.10;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2141,237,0
chrX	299346	.	G	A	1681	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.36;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1714,180,0
chrX	299490	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=5.891;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.105;QD=19.93;ReadPosRankSum=1.680;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1368,147,0
chrX	299496	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.336;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.099;QD=19.68;ReadPosRankSum=-0.346;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1430,150,0
chrX	299551	.	C	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4468;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=17.32;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1072,111,0
chrX	299577	.	G	A	1076	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.21;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1109,120,0
chrX	299757	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.71;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1234,135,0
chrX	299820	.	T	C	1145	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.02;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1178,129,0
chrX	299874	.	C	T	878	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.42;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:911,96,0
chrX	299961	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.40;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1198,135,0
chrX	300176	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.8446;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.86;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1738,186,0
chrX	300626	.	C	T	3724.01	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.87;SB=-1.545e+03	GT:AD:DP:GQ:PL	1/1:0,156:156:99:3724,382,0
chrX	300732	.	A	T	2581	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.12;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2614,276,0
chrX	300806	.	G	T	1778	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.95;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1811,192,0
chrX	300843	.	T	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.25;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1916,204,0
chrX	300846	.	T	C	2007	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.07;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2040,222,0
chrX	301020	.	T	C	3090	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.23;SB=-1.724e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3123,348,0
chrX	301035	.	G	T	2730	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.02;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2763,291,0
chrX	301233	.	T	C	1809	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.04;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1842,207,0
chrX	301479	.	T	C	1308	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=18.69;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1341,150,0
chrX	301512	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.97;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1187,132,0
chrX	301515	.	T	C	1135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;DP=68;Dels=0.00;FS=6.901;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-1.361;QD=16.69;ReadPosRankSum=2.377;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1168,129,0
chrX	301759	.	T	C	1670	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.182;QD=21.97;ReadPosRankSum=1.687;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1703,183,0
chrX	301867	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.172;QD=19.79;ReadPosRankSum=1.681;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1379,150,0
chrX	301913	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=9.6420;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.28;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1331,141,0
chrX	302097	.	A	G	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=96;Dels=0.00;FS=4.337;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.091;QD=18.96;ReadPosRankSum=1.696;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,94:96:99:1853,210,0
chrX	302979	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.470;QD=23.23;ReadPosRankSum=1.627;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1566,171,0
chrX	303071	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.29;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1736,195,0
chrX	303269	.	A	G	1202	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1235,135,0
chrX	303316	.	C	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.59;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1614,168,0
chrX	303606	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1757,189,0
chrX	304221	.	A	C	2199	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.94;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2232,246,0
chrX	304743	.	C	T	1872	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1905,204,0
chrX	304829	.	G	C	1877	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.55;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1910,210,0
chrX	305479	.	A	C	1255	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.192;QD=19.92;ReadPosRankSum=1.677;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1288,141,0
chrX	305731	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.06;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1234,138,0
chrX	305977	.	G	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.42;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1939,207,0
chrX	306140	.	G	C	901	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.00;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:934,102,0
chrX	306152	.	G	A	975	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=16.25;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1008,108,0
chrX	306157	.	A	G	917	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=15.03;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:950,105,0
chrX	306366	.	G	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1135,120,0
chrX	306605	.	A	G	1880	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=3.375;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=1.175;QD=21.61;ReadPosRankSum=1.653;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1913,207,0
chrX	306632	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.42;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1468,156,0
chrX	306746	.	T	A	984	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.50;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1017,108,0
chrX	307360	.	C	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.59;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1669,180,0
chrX	308830	.	T	C	866	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.62;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:899,99,0
chrX	309191	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=19.68;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1017,111,0
chrX	309504	.	C	A	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.247;QD=24.30;ReadPosRankSum=1.188;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1734,183,0
chrX	309745	.	T	C	2004	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=25.05;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2037,222,0
chrX	310704	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.962;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.182;QD=17.76;ReadPosRankSum=0.907;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1152,129,0
chrX	311177	.	G	C	1833	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.71;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1866,213,0
chrX	311534	.	G	A	1698	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.49;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1731,183,0
chrX	311627	.	A	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.83;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1064,117,0
chrX	311770	.	A	G	2122	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.9211;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.57;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2155,243,0
chrX	311840	.	G	A	1639	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.41;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1672,177,0
chrX	311915	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.55;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1451,159,0
chrX	312403	.	T	C	2137	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2170,237,0
chrX	312482	.	T	G	1963	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.66;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1996,216,0
chrX	312913	.	G	C	1713	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.47;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1746,192,0
chrX	312921	.	A	G	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.201;QD=18.86;ReadPosRankSum=1.652;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1655,186,0
chrX	313574	.	G	A	1806	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.43;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1839,213,0
chrX	313808	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.60;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1428,150,0
chrX	313947	.	T	C	2887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=147;Dels=0.00;FS=6.933;HaplotypeScore=8.1354;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;MQRankSum=-1.069;QD=19.64;ReadPosRankSum=0.194;SB=-1.671e+03	GT:AD:DP:GQ:PL	1/1:2,144:147:99:2920,318,0
chrX	313973	.	G	A	2572	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=19.78;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2605,285,0
chrX	314024	.	T	C	1393	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=16.01;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1426,162,0
chrX	314406	.	C	G	1594	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.92;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1627,180,0
chrX	314438	.	A	G	1697	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.45;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1730,192,0
chrX	314471	.	G	A	1836	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.40;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1869,204,0
chrX	314551	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.54;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1408,150,0
chrX	314948	.	A	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.7828;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.69;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1622,177,0
chrX	315237	.	T	C	2080	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.493;QD=23.91;ReadPosRankSum=1.692;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2113,231,0
chrX	315785	.	A	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.80;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1401,150,0
chrX	317223	.	T	G	3171	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=6.4630;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.17;SB=-1.790e+03	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3204,351,0
chrX	317989	.	C	T	2398	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.2701;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.06;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2431,255,0
chrX	318225	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=17.42;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1322,144,0
chrX	318240	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=16.30;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1337,147,0
chrX	318543	.	C	T	2071	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=24.36;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2104,222,0
chrX	318573	.	G	A	2006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=6.938;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.949;QD=23.33;ReadPosRankSum=1.031;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:2039,216,0
chrX	318721	.	T	A	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.643;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=0.388;QD=16.40;ReadPosRankSum=1.370;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1132,120,0
chrX	318723	.	C	T	1073	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.26;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1106,117,0
chrX	318780	.	A	C	2001	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.9325;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.62;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2034,222,0
chrX	318863	.	C	A	2444	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.71;SB=-1.521e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2477,276,0
chrX	318879	.	A	G	2086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.648;QD=18.14;ReadPosRankSum=1.702;SB=-1.407e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2119,231,0
chrX	318887	.	T	C	2030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-1.672;QD=17.65;ReadPosRankSum=1.702;SB=-1.495e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2063,231,0
chrX	318923	.	T	C	1501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=100;Dels=0.00;FS=3.235;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.437;QD=15.01;ReadPosRankSum=1.627;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:1,98:100:99:1534,165,0
chrX	319398	.	T	C	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=12.0081;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.107;QD=20.83;ReadPosRankSum=1.561;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1741,192,0
chrX	319580	.	G	A	2051	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.05;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2084,219,0
chrX	319771	.	G	A	1993	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=16.61;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2026,213,0
chrX	319781	.	G	T	1990	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=15.08;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2023,222,0
chrX	319840	.	G	A	2423	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=97.8591;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.36;SB=-1.627e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2456,261,0
chrX	319942	.	C	T	2214	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.4469;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.13;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2247,237,0
chrX	319952	.	T	C	1842	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;MQRankSum=-1.131;QD=17.88;ReadPosRankSum=1.697;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,97:103:99:1875,201,0
chrX	319958	.	T	C	1663	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.56;MQ0=0;QD=16.80;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1696,186,0
chrX	319963	.	G	A	1740	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=17.06;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1773,186,0
chrX	320192	.	T	C	2052	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3259;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.15;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2085,231,0
chrX	320259	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.40;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2139,225,0
chrX	320639	.	T	C	1698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=3.415;HaplotypeScore=7.4225;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.192;QD=18.66;ReadPosRankSum=1.694;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1731,192,0
chrX	320686	.	A	G	2221	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.1416;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.01;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,108:111:99:2254,243,0
chrX	320812	.	G	A	2142	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.31;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2175,228,0
chrX	320873	.	G	C	1770	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.07;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1803,198,0
chrX	320888	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.95;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1835,198,0
chrX	321044	.	G	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.79;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1458,162,0
chrX	321141	.	A	T	1515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.293;QD=21.04;ReadPosRankSum=1.586;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1548,162,0
chrX	321279	.	A	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.65;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1072,117,0
chrX	321374	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.33;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1029,114,0
chrX	321383	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.19;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1127,120,0
chrX	321428	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.05;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1134,129,0
chrX	321551	.	C	T	996	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1029,108,0
chrX	321659	.	T	C	1030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=44;Dels=0.00;FS=2.675;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.816;QD=23.41;ReadPosRankSum=2.840;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:3,41:44:99:1063,117,0
chrX	321725	.	A	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.51;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1406,153,0
chrX	321751	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.39;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1600,168,0
chrX	321923	.	C	T	2133	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.97;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2166,231,0
chrX	322216	.	G	A	2329	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=22.18;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2362,246,0
chrX	322237	.	G	A	2079	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.56;SB=-1.414e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2112,228,0
chrX	322290	.	T	C	2106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=0.966;QD=18.64;ReadPosRankSum=1.671;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2139,237,0
chrX	322508	.	G	A	1394	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0017;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.81;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1427,150,0
chrX	322533	.	A	G	1144	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=0.540;QD=18.75;ReadPosRankSum=1.675;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1177,129,0
chrX	322586	.	T	G	1577	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.00;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1610,180,0
chrX	322636	.	T	C	1784	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.49;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1817,198,0
chrX	322729	.	A	G	698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.111;DP=93;Dels=0.01;FS=6.571;HaplotypeScore=12.0173;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;MQRankSum=0.941;QD=7.51;ReadPosRankSum=3.439;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:6,86:92:93:731,93,0
chrX	322730	.	G	A	709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=95;Dels=0.01;FS=4.244;HaplotypeScore=13.5946;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=0.069;QD=7.46;ReadPosRankSum=3.221;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:5,87:94:93:742,93,0
chrX	322763	.	C	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=16.67;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1283,138,0
chrX	322821	.	C	A	970	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.32;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1003,108,0
chrX	322824	.	A	T	911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=4.536;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-1.283;QD=16.56;ReadPosRankSum=1.668;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:944,102,0
chrX	323463	.	C	T	821	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.10;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:854,93,0
chrX	323601	.	C	G	1592	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.95;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1625,180,0
chrX	323637	.	G	A	1867	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.65;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1900,210,0
chrX	323703	.	T	C	1686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.061;QD=19.60;ReadPosRankSum=1.691;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1719,186,0
chrX	323802	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.8746;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.11;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1139,123,0
chrX	323895	.	T	C	1625	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.251;QD=22.57;ReadPosRankSum=1.684;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1658,180,0
chrX	324264	.	T	C	759	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.81;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:792,90,0
chrX	324297	.	A	G	904	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=15.59;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:937,105,0
chrX	324432	.	A	C	928	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.58;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:961,105,0
chrX	324627	.	T	C	1243	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.02;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1276,141,0
chrX	324792	.	G	A	3160	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.88;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:3193,339,0
chrX	324913	.	T	C	2483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.5509;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.020;QD=22.99;ReadPosRankSum=1.635;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2516,279,0
chrX	324924	.	T	C	2224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.364;QD=23.17;ReadPosRankSum=1.695;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,93:96:99:2257,252,0
chrX	325332	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.53;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1541,168,0
chrX	325369	.	A	C	1551	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.41;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1584,171,0
chrX	325435	.	G	A	2959	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.25;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2992,318,0
chrX	325483	.	T	C	2973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=139;Dels=0.00;FS=2.494;HaplotypeScore=13.2182;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.699;QD=21.39;ReadPosRankSum=2.861;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:3,134:139:99:3006,339,0
chrX	325739	.	A	T	2254	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.68;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2287,243,0
chrX	325803	.	C	T	3607.01	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.97;SB=-1.994e+03	GT:AD:DP:GQ:PL	1/1:0,156:157:99:3607,387,0
chrX	326008	.	G	A	2121	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.5776;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.61;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2154,240,0
chrX	327501	.	C	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.57;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1683,180,0
chrX	327718	.	T	C	1017	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=17.84;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1050,117,0
chrX	327809	.	C	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=16.94;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1168,126,0
chrX	327851	.	A	G	913	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.30;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:946,102,0
chrX	327946	.	C	G	913	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=9.8770;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=21.23;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:946,108,0
chrX	327986	.	G	C	903	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.81;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:99:936,105,0
chrX	328057	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1400,147,0
chrX	328162	.	C	T	782	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:87:815,87,0
chrX	328274	.	G	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=16.44;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1052,117,0
chrX	328451	.	A	G	727	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-1.631;QD=21.38;ReadPosRankSum=1.631;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:87:760,87,0
chrX	328524	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.41;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:843,87,0
chrX	328877	.	G	T	871	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.53;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:904,96,0
chrX	329090	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.53;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1791,201,0
chrX	329308	.	T	C	1004	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=18.94;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1037,117,0
chrX	329323	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.88;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1166,123,0
chrX	329633	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.11;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1581,174,0
chrX	329730	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.56;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1441,162,0
chrX	329858	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.64;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:66:99:1197,132,0
chrX	329967	.	G	A	2037	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.15;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2070,216,0
chrX	330001	.	T	C	2093	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2126,228,0
chrX	330191	.	A	G	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.02;FS=3.602;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-0.598;QD=21.02;ReadPosRankSum=1.606;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1210,138,0
chrX	330212	.	A	G	989	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.60;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1022,117,0
chrX	330287	.	A	G	2546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=104;Dels=0.00;FS=2.973;HaplotypeScore=7.5631;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.651;QD=24.48;ReadPosRankSum=2.260;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:2,102:104:99:2579,282,0
chrX	330470	.	C	G	1239	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.12;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1272,141,0
chrX	331030	.	C	G	931	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=14.32;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:964,108,0
chrX	331031	.	T	A	983	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.30;MQ0=0;QD=15.36;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1016,108,0
chrX	331044	.	T	G	812	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=12.89;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:93:845,93,0
chrX	331050	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=12.66;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:93:843,93,0
chrX	331064	.	G	A	805	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6712;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=12.20;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:90:838,90,0
chrX	331109	.	A	C	1671	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.59;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1704,189,0
chrX	331412	.	G	A	2264	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.58;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2297,258,0
chrX	331639	.	C	T	2879	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.49;SB=-1.516e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2912,315,0
chrX	331811	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.44;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1604,180,0
chrX	331934	.	C	T	4002.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.40;SB=-2.235e+03	GT:AD:DP:GQ:PL	1/1:0,171:171:99:4002,429,0
chrX	332541	.	G	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.32;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1171,123,0
chrX	332595	.	A	C	631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-1.410;QD=14.67;ReadPosRankSum=1.652;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:75:664,75,0
chrX	332597	.	G	A	713	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.20;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:746,78,0
chrX	332621	.	A	G	974	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=15.46;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1007,111,0
chrX	332665	.	A	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4347;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.75;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:1909,210,0
chrX	333075	.	A	G	2142	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=17.0798;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.162;QD=15.75;ReadPosRankSum=2.947;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:3,129:136:99:2175,237,0
chrX	333136	.	C	T	2489	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=13.1973;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.60;SB=-1.576e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2522,267,0
chrX	333412	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.52;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1033,114,0
chrX	334125	.	C	T	2116	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.5308;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.37;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2149,228,0
chrX	334204	.	A	G	1476	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.09;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1509,168,0
chrX	334264	.	C	T	1794	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=23.00;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1827,198,0
chrX	334291	.	T	C	1635	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0081;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.09;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1668,186,0
chrX	334681	.	A	G	1519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.783;QD=20.53;ReadPosRankSum=1.542;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1552,168,0
chrX	334858	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.88;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1203,126,0
chrX	335053	.	C	G	904	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.52;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:937,102,0
chrX	335788	.	C	A	2480	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.9606;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.95;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2513,270,0
chrX	336383	.	G	A	2130	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.30;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2163,231,0
chrX	336512	.	C	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.04;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1911,201,0
chrX	336551	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.86;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1725,189,0
chrX	336583	.	C	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=19.30;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1249,135,0
chrX	336725	.	G	A	2167	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.57;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2200,231,0
chrX	336755	.	G	A	2016	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.16;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,97:100:99:2049,213,0
chrX	336944	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=18.61;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1317,150,0
chrX	337050	.	T	A	1885	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.18;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1918,201,0
chrX	337087	.	C	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.69;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1703,183,0
chrX	337106	.	T	C	1760	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.00;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1793,195,0
chrX	337133	.	A	G	2004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.650;QD=20.66;ReadPosRankSum=1.660;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:1,95:97:99:2037,219,0
chrX	337222	.	A	C	1032	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.24;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1065,120,0
chrX	337263	.	A	C	1114	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.73;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1147,126,0
chrX	337345	.	A	C	1146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.5413;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.204;QD=16.37;ReadPosRankSum=1.681;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,67:70:99:1179,129,0
chrX	337436	.	A	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.16;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1384,156,0
chrX	337468	.	G	A	963	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.26;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:996,108,0
chrX	337551	.	T	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.68;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1269,138,0
chrX	337579	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=20.77;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1217,129,0
chrX	337727	.	A	T	1652	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.40;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1685,177,0
chrX	337751	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.03;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1395,150,0
chrX	338993	.	T	C	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=-0.095;QD=19.80;ReadPosRankSum=1.694;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1835,207,0
chrX	339013	.	A	C	1888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-0.589;QD=18.51;ReadPosRankSum=1.697;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:1,99:102:99:1921,213,0
chrX	339050	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=104;Dels=0.00;FS=2.973;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=1.479;QD=17.45;ReadPosRankSum=2.355;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:2,102:104:99:1848,204,0
chrX	339319	.	T	C	3021	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=148;Dels=0.00;FS=3.255;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=1.542;QD=20.41;ReadPosRankSum=1.708;SB=-1.767e+03	GT:AD:DP:GQ:PL	1/1:1,146:148:99:3054,345,0
chrX	339346	.	G	A	3275.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=22.43;SB=-1.613e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3275,357,0
chrX	339379	.	C	G	2968	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=49.57;MQ0=0;QD=20.90;SB=-1.888e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:3001,327,0
chrX	339423	.	T	G	1819	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.230;DP=126;Dels=0.00;FS=3.043;HaplotypeScore=9.8204;MLEAC=2;MLEAF=1.00;MQ=37.67;MQ0=0;MQRankSum=-0.830;QD=14.44;ReadPosRankSum=2.410;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:2,121:126:99:1852,207,0
chrX	339426	.	C	T	1822	SnpCluster	AC=2;AF=1.00;AN=2;DP=121;Dels=0.02;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=15.06;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:1855,210,0
chrX	339429	.	T	C	1837	SnpCluster	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=15.84;SB=-1.487e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:1870,210,0
chrX	339446	.	T	A	1504	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=14.19;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1537,168,0
chrX	339451	.	G	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=15.74;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1591,168,0
chrX	339493	.	C	T	1386	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=18.00;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1419,150,0
chrX	339504	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=16.43;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1249,132,0
chrX	339591	.	A	G	1925	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.38;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1958,213,0
chrX	339657	.	C	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.97;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1750,183,0
chrX	339669	.	C	G	1576	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.7591;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.51;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1609,183,0
chrX	339795	.	T	C	2431	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=22.30;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2464,273,0
chrX	340014	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.15;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1527,168,0
chrX	340089	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.58;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1457,162,0
chrX	340095	.	C	T	1543	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.74;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1576,168,0
chrX	340134	.	A	G	1901	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=17.13;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:1934,210,0
chrX	340255	.	A	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.54;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1110,120,0
chrX	340449	.	C	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=23.75;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1244,132,0
chrX	340737	.	G	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.83;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1158,120,0
chrX	340776	.	A	G	1023	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.67;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1056,114,0
chrX	341057	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-0.206;QD=20.44;ReadPosRankSum=1.615;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1239,135,0
chrX	341086	.	G	A	1348	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.74;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1381,153,0
chrX	341290	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.9863;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.21;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1162,120,0
chrX	341296	.	G	A	946	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=16.03;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:979,108,0
chrX	341422	.	C	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.35;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1501,165,0
chrX	341423	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.65;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1581,168,0
chrX	341586	.	T	C	1089	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.17;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1122,126,0
chrX	341797	.	G	A	2080	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.452;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.695;QD=22.37;ReadPosRankSum=0.466;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2113,225,0
chrX	341843	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=1.637;QD=20.77;ReadPosRankSum=1.637;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1549,171,0
chrX	342290	.	T	C	620	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.22;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:653,72,0
chrX	342457	.	C	G	996	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.19;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1029,114,0
chrX	342479	.	T	C	795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.421;QD=21.49;ReadPosRankSum=1.545;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:90:828,90,0
chrX	342505	.	T	C	822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.953;QD=20.55;ReadPosRankSum=1.646;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:93:855,93,0
chrX	342558	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.79;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:961,105,0
chrX	342578	.	A	G	1073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=6.721;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.332;QD=22.83;ReadPosRankSum=1.659;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1106,123,0
chrX	342851	.	C	T	1336	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.27;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1369,147,0
chrX	342956	.	A	T	1698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.652;QD=22.05;ReadPosRankSum=1.687;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1731,186,0
chrX	343412	.	A	G	2421	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.21;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,106:109:99:2454,276,0
chrX	343445	.	A	G	2586	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.29;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,112:116:99:2619,285,0
chrX	343823	.	T	C	2004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.303;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.490;QD=21.55;ReadPosRankSum=1.694;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:1,91:93:99:2037,231,0
chrX	343856	.	C	T	1625	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.38;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1658,186,0
chrX	343871	.	A	G	1481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-1.030;QD=20.01;ReadPosRankSum=1.685;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1514,168,0
chrX	343920	.	T	C	1247	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=17.81;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1280,141,0
chrX	344363	.	C	T	2204	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.61;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2237,234,0
chrX	344460	.	C	T	1722	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.36;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1755,192,0
chrX	344732	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=5.1414;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.254;QD=17.68;ReadPosRankSum=1.653;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1571,171,0
chrX	344747	.	A	C	1645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7753;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=0.666;QD=18.08;ReadPosRankSum=1.656;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1678,183,0
chrX	345034	.	A	G	2154	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.67;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2187,234,0
chrX	345062	.	A	T	2008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.405;HaplotypeScore=7.3618;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.640;QD=21.83;ReadPosRankSum=1.694;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2041,219,0
chrX	345146	.	C	G	1284	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.45;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1317,147,0
chrX	345328	.	C	T	1875	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.6222;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.83;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1908,204,0
chrX	345365	.	C	T	2642	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.59;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2675,279,0
chrX	345831	.	T	A	2530	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.4397;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.19;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2563,285,0
chrX	346421	.	A	G	1945	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.522;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=1.347;QD=21.37;ReadPosRankSum=1.694;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1978,225,0
chrX	346488	.	T	C	2096	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=22.78;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2129,240,0
chrX	346495	.	G	A	1936	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.25;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1969,219,0
chrX	346587	.	A	C	1790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=79;Dels=0.00;FS=4.297;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.355;QD=22.66;ReadPosRankSum=1.688;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1823,198,0
chrX	346643	.	C	T	2490	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=25.67;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2523,267,0
chrX	346735	.	C	T	2537	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.16;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2570,270,0
chrX	346858	.	T	C	1856	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.84;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1889,207,0
chrX	347216	.	T	C	536	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=12.18;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,43:44:63:569,63,0
chrX	347601	.	G	A	933	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,37:38:99:966,102,0
chrX	347852	.	G	A	1168	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=15.78;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1201,135,0
chrX	347951	.	T	A	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=3.237;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.558;QD=21.34;ReadPosRankSum=1.674;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1292,135,0
chrX	348200	.	G	A	2015	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.90;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2048,216,0
chrX	348292	.	A	G	1666	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.80;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1699,186,0
chrX	348584	.	A	G	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-0.060;QD=18.86;ReadPosRankSum=1.613;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1127,126,0
chrX	348652	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.48;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1676,183,0
chrX	348689	.	C	T	2289	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.1479;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.56;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2322,243,0
chrX	348750	.	C	T	2663	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.58;SB=-1.395e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:99:2696,285,0
chrX	348753	.	C	A	2635	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=18.96;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2668,282,0
chrX	348770	.	T	C	2455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=0.512;QD=18.60;ReadPosRankSum=2.412;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:2,130:132:99:2488,273,0
chrX	348957	.	C	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.42;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1115,120,0
chrX	348976	.	A	G	931	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.93;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:964,105,0
chrX	348978	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=18.68;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1098,114,0
chrX	349384	.	C	T	1066	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.77;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1099,117,0
chrX	349396	.	T	A	929	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=16.30;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:962,108,0
chrX	349640	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.15;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1408,159,0
chrX	354413	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7206;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.20;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1790,192,0
chrX	354679	.	C	A	370	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=14.2474;MLEAC=2;MLEAF=1.00;MQ=29.37;MQ0=1;QD=12.33;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:48:403,48,0
chrX	354692	.	T	C	180.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=28;Dels=0.00;FS=19.713;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=0;MQRankSum=-1.411;QD=6.43;ReadPosRankSum=2.748;SB=-4.093e-02	GT:AD:DP:GQ:PL	1/1:3,25:28:24:213,24,0
chrX	354706	.	T	C	262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.144;DP=36;Dels=0.00;FS=23.860;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;MQRankSum=3.332;QD=7.28;ReadPosRankSum=-0.361;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:6,30:36:33:295,33,0
chrX	355110	.	G	A	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.033;DP=28;Dels=0.00;FS=25.660;HaplotypeScore=5.8809;MLEAC=2;MLEAF=1.00;MQ=15.30;MQ0=5;MQRankSum=3.841;QD=0.81;ReadPosRankSum=-2.872;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:20,8:28:6:54,6,0
chrX	355125	.	C	T	27.77	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;DP=23;Dels=0.00;FS=25.660;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=0;MQRankSum=3.841;QD=1.21;ReadPosRankSum=0.549;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:15,8:23:6:59,6,0
chrX	355127	.	A	G	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DP=23;Dels=0.00;FS=25.660;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=0;MQRankSum=3.841;QD=0.95;ReadPosRankSum=0.936;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:15,8:23:6:53,6,0
chrX	355129	.	C	T	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.388;DP=23;Dels=0.00;FS=25.660;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=16.88;MQ0=0;MQRankSum=3.841;QD=0.99;ReadPosRankSum=1.581;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:15,8:23:6:54,6,0
chrX	355137	.	A	C	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.580;DP=22;Dels=0.00;FS=22.583;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=17.22;MQ0=0;MQRankSum=3.720;QD=0.99;ReadPosRankSum=1.809;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:14,8:22:6:53,6,0
chrX	355146	.	A	G	18.82	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.445;DP=19;Dels=0.00;FS=18.921;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=18.42;MQ0=0;MQRankSum=3.592;QD=0.99;ReadPosRankSum=1.610;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:11,8:19:6:50,6,0
chrX	355147	.	G	A	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.421;DP=18;Dels=0.00;FS=23.955;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=18.87;MQ0=0;MQRankSum=3.510;QD=1.43;ReadPosRankSum=1.200;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:10,8:18:6:57,6,0
chrX	355152	.	T	C	21.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.165;DP=18;Dels=0.00;FS=20.434;HaplotypeScore=2.6603;MLEAC=2;MLEAF=1.00;MQ=18.87;MQ0=0;MQRankSum=3.416;QD=1.21;ReadPosRankSum=0.818;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:10,8:18:6:53,6,0
chrX	357352	.	A	G	1321	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.10;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1354,153,0
chrX	358755	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.59;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1350,144,0
chrX	359277	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.81;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1557,165,0
chrX	359542	.	A	G	1029	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.8412;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.42;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1062,114,0
chrX	359696	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.70;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1396,159,0
chrX	360152	.	T	G	826	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.77;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:859,96,0
chrX	360186	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.238;QD=16.98;ReadPosRankSum=1.650;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,41:43:84:763,84,0
chrX	360273	.	C	T	711	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.22;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:744,78,0
chrX	361340	.	G	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.40;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1197,132,0
chrX	361485	.	T	C	1207	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.57;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1240,138,0
chrX	361646	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=12.7849;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.28;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1744,192,0
chrX	362316	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.54;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1450,165,0
chrX	362838	.	C	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.56;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1413,159,0
chrX	362886	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=5.185;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.525;QD=16.02;ReadPosRankSum=1.680;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1090,120,0
chrX	363087	.	G	A	1119	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=15.12;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1152,129,0
chrX	363726	.	C	T	1017	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.76;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1050,108,0
chrX	364028	.	T	C	1752	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.18;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1785,198,0
chrX	364186	.	A	G	1807	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.51;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1840,201,0
chrX	364708	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.87;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1564,165,0
chrX	365188	.	G	A	2105	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.1986;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.26;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2138,225,0
chrX	365554	.	A	G	1932	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.129;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.174;QD=21.00;ReadPosRankSum=2.396;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1965,222,0
chrX	366494	.	T	G	1018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=8.988;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=0.911;QD=16.69;ReadPosRankSum=2.369;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1051,117,0
chrX	366669	.	T	C	917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=4.455;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.098;QD=17.30;ReadPosRankSum=1.667;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:950,105,0
chrX	366740	.	C	T	939	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.41;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:972,108,0
chrX	367017	.	T	C	1139	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=16.75;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1172,129,0
chrX	367140	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=2;QD=17.53;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1155,132,0
chrX	367233	.	A	G	209.01	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.57;MQ0=0;QD=6.74;SB=-7.699e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:27:242,27,0
chrX	367284	.	C	T	331	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=1;QD=7.88;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:39:364,39,0
chrX	367326	.	A	T	769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=1;MQRankSum=1.061;QD=11.83;ReadPosRankSum=2.064;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:84:802,84,0
chrX	367332	.	T	C	802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7949;MLEAC=2;MLEAF=1.00;MQ=43.48;MQ0=0;MQRankSum=0.997;QD=12.15;ReadPosRankSum=0.840;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:93:835,93,0
chrX	367339	.	T	C	840	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9137;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=13.33;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:93:873,93,0
chrX	367399	.	A	G	603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.965;DP=51;Dels=0.00;FS=3.055;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-1.043;QD=11.82;ReadPosRankSum=0.849;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:69:636,69,0
chrX	367417	.	G	A	673	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=16.41;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:706,81,0
chrX	367594	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=18.54;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1127,117,0
chrX	367856	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.05;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1428,150,0
chrX	368244	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.37;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1738,192,0
chrX	369535	.	C	A	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=3.699;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.270;QD=20.76;ReadPosRankSum=-0.208;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1611,171,0
chrX	369900	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5167;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.70;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1565,174,0
chrX	370407	.	T	C	1497	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.79;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1530,168,0
chrX	370550	.	G	T	1809	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.06;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1842,201,0
chrX	371571	.	T	A	1274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=3.704;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.256;QD=20.55;ReadPosRankSum=1.619;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1307,138,0
chrX	372444	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.16;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1620,171,0
chrX	372476	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.026;QD=20.10;ReadPosRankSum=1.681;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1380,153,0
chrX	372585	.	T	C	835	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.86;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:96:868,96,0
chrX	372699	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.17;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1203,132,0
chrX	373143	.	A	G	1098	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1131,129,0
chrX	373251	.	T	C	1682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.287;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.610;QD=22.73;ReadPosRankSum=3.311;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:4,70:74:99:1715,186,0
chrX	373527	.	A	G	2178	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=3.226;HaplotypeScore=6.7644;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.824;QD=21.15;ReadPosRankSum=1.665;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2211,243,0
chrX	374244	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.95;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1901,201,0
chrX	374320	.	C	T	1115	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.65;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1148,126,0
chrX	374836	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=85;Dels=0.00;FS=2.678;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.787;QD=18.44;ReadPosRankSum=2.391;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:2,81:85:99:1600,180,0
chrX	375392	.	C	T	1064	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1097,117,0
chrX	375484	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.66;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1116,123,0
chrX	375517	.	T	C	1350	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.43;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1383,150,0
chrX	375981	.	T	C	1911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.208;QD=25.14;ReadPosRankSum=1.640;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1944,216,0
chrX	376071	.	C	T	1672	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.96;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1705,177,0
chrX	376244	.	C	T	1761	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.79;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1794,192,0
chrX	378869	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=17.71;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1414,159,0
chrX	378873	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.73;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1438,153,0
chrX	379089	.	T	C	982	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.2746;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=15.84;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1015,111,0
chrX	380048	.	C	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.78;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1101,117,0
chrX	380097	.	T	C	986	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.00;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:58:99:1019,114,0
chrX	380353	.	C	T	1749	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4707;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.14;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1782,195,0
chrX	380369	.	G	A	1394	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.81;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1427,150,0
chrX	380706	.	T	C	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.944;DP=129;Dels=0.00;FS=12.472;HaplotypeScore=11.4805;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=-0.480;QD=16.57;ReadPosRankSum=2.944;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:3,123:129:99:2170,237,0
chrX	381023	.	A	G	1243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.148;QD=17.51;ReadPosRankSum=1.683;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1276,144,0
chrX	381644	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.71;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1623,183,0
chrX	381650	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.27;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1632,174,0
chrX	382039	.	A	G	854	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.42;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:887,102,0
chrX	382497	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.12;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1180,120,0
chrX	382499	.	C	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.30;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1114,117,0
chrX	382565	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.75;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1514,168,0
chrX	382880	.	A	G	1428	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.83;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1461,156,0
chrX	383417	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.522;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.770;QD=20.44;ReadPosRankSum=1.668;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1137,132,0
chrX	384052	.	T	C	1558	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1591,171,0
chrX	384523	.	A	C	1133	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.38;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1166,123,0
chrX	384853	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.65;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1783,195,0
chrX	384940	.	G	T	881	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.74;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:914,96,0
chrX	384973	.	C	T	1242	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.79;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1275,138,0
chrX	385072	.	A	G	2274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=-1.589;QD=22.08;ReadPosRankSum=2.402;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:2,101:103:99:2307,249,0
chrX	385186	.	T	A	2591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=124;Dels=0.00;FS=3.197;HaplotypeScore=12.3441;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.179;QD=20.90;ReadPosRankSum=1.703;SB=-1.523e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2624,279,0
chrX	385354	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.66;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1358,147,0
chrX	385373	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.58;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1457,159,0
chrX	385498	.	G	A	2683	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.93;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2716,291,0
chrX	385636	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.4597;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.47;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1606,174,0
chrX	385665	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=22.20;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1454,153,0
chrX	385903	.	A	T	2318	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.70;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2351,249,0
chrX	385921	.	A	T	2224	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.86;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2257,243,0
chrX	385990	.	G	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.53;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1552,165,0
chrX	385991	.	C	T	1535	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.74;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1568,165,0
chrX	386167	.	A	G	1281	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.237;QD=20.33;ReadPosRankSum=1.677;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1314,147,0
chrX	386286	.	A	C	834	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=17.02;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:96:867,96,0
chrX	386296	.	A	T	631	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.05;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:69:664,69,0
chrX	387990	.	G	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.81;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1294,144,0
chrX	388199	.	C	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1055,111,0
chrX	388820	.	A	C	1104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.299;QD=19.03;ReadPosRankSum=1.673;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1137,126,0
chrX	388825	.	T	C	1161	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.68;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1194,129,0
chrX	388844	.	C	T	1197	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.00;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1230,135,0
chrX	389003	.	A	C	936	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.40;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:969,108,0
chrX	389099	.	G	C	644	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=17.41;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,34:37:75:677,75,0
chrX	389114	.	A	G	649	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=17.54;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:75:682,75,0
chrX	389243	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.98;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1286,135,0
chrX	389413	.	C	T	784	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.76;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:87:817,87,0
chrX	389732	.	T	C	815	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.52;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:848,96,0
chrX	389780	.	C	T	818	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.97;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:90:851,90,0
chrX	390043	.	A	G	892	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=15.65;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:925,111,0
chrX	390044	.	G	A	891	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.91;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:924,111,0
chrX	390902	.	G	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.31;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1589,171,0
chrX	391247	.	A	G	1972	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.061;QD=23.20;ReadPosRankSum=1.691;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2005,219,0
chrX	391361	.	C	G	1223	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.46;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1256,138,0
chrX	391657	.	T	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=18.94;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1226,138,0
chrX	391693	.	T	C	1072	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.14;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1105,123,0
chrX	391817	.	A	G	2463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=112;Dels=0.00;FS=4.286;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.480;QD=21.99;ReadPosRankSum=1.669;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:1,109:112:99:2496,276,0
chrX	392321	.	C	T	2095	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=15.4086;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.54;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2128,225,0
chrX	392346	.	G	A	2462	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.01;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2495,267,0
chrX	392787	.	A	G	1370	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.45;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1403,156,0
chrX	393288	.	T	C	651	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.47;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:684,78,0
chrX	393423	.	T	C	545	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=12.39;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:66:578,66,0
chrX	393501	.	C	T	450	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=15.52;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:54:483,54,0
chrX	393564	.	G	C	456	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=13.03;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:54:489,54,0
chrX	393871	.	C	T	822	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:96:855,96,0
chrX	393918	.	T	C	2106	filter	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1490;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2139,231,0
chrX	394236	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.287;QD=19.35;ReadPosRankSum=1.683;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1407,156,0
chrX	394341	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.11;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1595,174,0
chrX	394692	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=17.83;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1156,120,0
chrX	394713	.	T	C	1165	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.79;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1198,129,0
chrX	394930	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.08;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1478,162,0
chrX	395092	.	G	C	755	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.4101;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.98;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:87:788,87,0
chrX	395232	.	G	A	1091	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5134;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.05;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1124,120,0
chrX	395307	.	T	C	1898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.856;QD=21.33;ReadPosRankSum=1.692;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1931,210,0
chrX	395352	.	C	A	2171	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.93;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2204,249,0
chrX	395395	.	G	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=24.21;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2067,222,0
chrX	395409	.	C	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.99;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1849,198,0
chrX	395469	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.61;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1254,135,0
chrX	395805	.	G	A	1622	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1092;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.17;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1655,177,0
chrX	396819	.	A	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.67;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1645,174,0
chrX	397072	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.23;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2078,234,0
chrX	397093	.	T	C	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=2.941;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.367;QD=22.05;ReadPosRankSum=2.391;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1885,207,0
chrX	397310	.	A	G	2144	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.44;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2177,240,0
chrX	397474	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.97;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1291,144,0
chrX	398915	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.75;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1557,162,0
chrX	398997	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=23.44;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1322,144,0
chrX	399030	.	T	C	1174	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.74;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1207,132,0
chrX	399357	.	A	G	950	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.39;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:983,108,0
chrX	399363	.	C	T	896	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=16.91;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:929,102,0
chrX	399390	.	C	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.70;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1077,114,0
chrX	399573	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.73;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1505,162,0
chrX	399624	.	C	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.31;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1952,204,0
chrX	399972	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.26;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1535,174,0
chrX	400122	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.291;DP=91;Dels=0.00;FS=3.059;HaplotypeScore=8.8164;MLEAC=2;MLEAF=1.00;MQ=42.91;MQ0=0;MQRankSum=0.512;QD=13.60;ReadPosRankSum=0.651;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:2,88:91:99:1271,141,0
chrX	400151	.	T	C	728	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=10.40;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:84:761,84,0
chrX	400159	.	A	G	520	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5238;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=8.39;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:63:553,63,0
chrX	400168	.	A	G	342	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;MQRankSum=-1.733;QD=8.34;ReadPosRankSum=1.648;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:42:375,42,0
chrX	400169	.	T	C	306.27	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950;DP=40;Dels=0.00;FS=4.575;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.488;QD=7.66;ReadPosRankSum=-5.417;SB=-1.093e+02	GT:AD:DP:GQ:PL	0/1:21,19:40:9:336,0,9
chrX	400172	.	A	G	421	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.52;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:48:454,48,0
chrX	400178	.	C	T	250.11	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;DP=38;Dels=0.00;FS=2.835;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.793;QD=6.58;ReadPosRankSum=-5.255;SB=-1.071e+02	GT:AD:DP:GQ:PL	0/1:21,17:38:13:280,0,13
chrX	400267	.	A	G	100.26	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=6.8730;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=5.90;SB=-1.843e+02	GT:AD:DP:GQ:PL	1/1:0,16:17:15:133,15,0
chrX	400268	.	C	T	102.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.123;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=6.8730;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;MQRankSum=-1.735;QD=6.02;ReadPosRankSum=1.123;SB=-1.985e+02	GT:AD:DP:GQ:PL	1/1:1,16:17:15:135,15,0
chrX	400282	.	G	A	106.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;MQRankSum=-0.743;QD=5.06;ReadPosRankSum=1.569;SB=-1.973e+02	GT:AD:DP:GQ:PL	1/1:1,20:21:15:139,15,0
chrX	400285	.	A	G	137.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=5.96;SB=-2.111e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:18:170,18,0
chrX	400289	.	A	G	157.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=6.54;SB=-2.241e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:21:190,21,0
chrX	400294	.	G	A	188.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=6.96;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:24:221,24,0
chrX	400303	.	A	G	178.03	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=5.74;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:24:211,24,0
chrX	400308	.	A	T	218.01	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.34;MQ0=0;QD=7.03;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:27:251,27,0
chrX	400335	.	G	A	391	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=11.17;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:45:424,45,0
chrX	400388	.	C	G	601	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=11.78;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:69:634,69,0
chrX	400497	.	G	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=16.80;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1276,144,0
chrX	400808	.	T	C	1198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.237;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.499;QD=20.31;ReadPosRankSum=1.674;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1231,135,0
chrX	401350	.	T	C	1635	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.58;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1668,183,0
chrX	401648	.	A	G	1278	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.07;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1311,141,0
chrX	401894	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.480;QD=22.87;ReadPosRankSum=1.669;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1291,141,0
chrX	402396	.	T	C	2644	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.99;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2677,288,0
chrX	402661	.	C	T	5508.01	PASS	AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=11.9968;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.95;SB=-2.664e+03	GT:AD:DP:GQ:PL	1/1:0,229:230:99:5508,580,0
chrX	402983	.	T	C	2332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=113;Dels=0.00;FS=4.196;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.690;QD=20.64;ReadPosRankSum=1.609;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2365,270,0
chrX	403189	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9807;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.86;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1454,156,0
chrX	403403	.	T	C	613	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=16.13;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:646,69,0
chrX	403967	.	G	A	2040	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.61;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,96:99:99:2073,225,0
chrX	404560	.	A	T	1599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.546;QD=21.90;ReadPosRankSum=1.685;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1632,171,0
chrX	404625	.	C	G	1212	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.64;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1245,135,0
chrX	404816	.	T	C	846	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.14;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:879,96,0
chrX	404951	.	A	G	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=4.288;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.102;QD=21.04;ReadPosRankSum=1.664;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1127,129,0
chrX	405244	.	A	G	803	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.69;MQ0=0;QD=17.84;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:836,93,0
chrX	405306	.	G	A	800	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=16.33;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:833,87,0
chrX	405389	.	T	C	1223	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.11;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1256,138,0
chrX	405572	.	G	C	677	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.84;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:710,81,0
chrX	405884	.	C	T	1946	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.95;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1979,213,0
chrX	405995	.	A	G	1342	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:59:99:1375,147,0
chrX	406607	.	C	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.02;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.55;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1053,111,0
chrX	406673	.	A	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.27;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1184,129,0
chrX	406781	.	G	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.71;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1314,144,0
chrX	406848	.	T	C	1260	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.33;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1293,138,0
chrX	407030	.	C	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.31;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1781,195,0
chrX	407535	.	G	A	2622	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.6221;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.22;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2655,279,0
chrX	408145	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.088;QD=24.78;ReadPosRankSum=1.674;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1495,168,0
chrX	408211	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.70;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1205,129,0
chrX	408967	.	A	G	1936	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.20;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1969,213,0
chrX	409479	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.637;QD=21.63;ReadPosRankSum=0.736;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1720,183,0
chrX	409825	.	T	C	1517	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.228;QD=19.70;ReadPosRankSum=1.687;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1550,168,0
chrX	410082	.	A	G	1298	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=23.18;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1331,147,0
chrX	410110	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=21.35;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1186,126,0
chrX	410131	.	A	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.02;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1354,147,0
chrX	410140	.	G	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.76;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1365,153,0
chrX	410189	.	G	A	2016	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.16;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2049,216,0
chrX	410365	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=20.43;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1259,138,0
chrX	410366	.	T	C	1157	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=18.97;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1190,135,0
chrX	410379	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=-0.544;QD=17.09;ReadPosRankSum=1.683;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1229,138,0
chrX	410405	.	C	T	880	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=14.67;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:913,99,0
chrX	410528	.	T	C	2268	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.14;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2301,255,0
chrX	410951	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8677;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.58;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1462,156,0
chrX	411303	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.13;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1235,129,0
chrX	411342	.	T	C	1050	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.394;QD=23.86;ReadPosRankSum=1.654;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1083,120,0
chrX	411771	.	C	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.71;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1645,177,0
chrX	412419	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.6485;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.06;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1444,153,0
chrX	412734	.	T	C	1917	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.03;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1950,216,0
chrX	412914	.	T	C	971	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=17.34;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,53:56:99:1004,108,0
chrX	412968	.	T	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.99;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1594,177,0
chrX	413049	.	T	G	2001	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.382;QD=22.48;ReadPosRankSum=1.654;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2034,222,0
chrX	414104	.	C	T	2217	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=3.8422;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.62;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2250,237,0
chrX	414125	.	G	A	2482	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.77;SB=-1.495e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2515,267,0
chrX	414544	.	T	C	1551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=84;Dels=0.00;FS=3.697;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.845;QD=18.46;ReadPosRankSum=1.605;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:1,81:84:99:1584,174,0
chrX	414830	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.72;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1549,171,0
chrX	414832	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.40;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1597,171,0
chrX	415838	.	G	A	2344	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.56;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2377,255,0
chrX	415991	.	C	T	2351	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=1;QD=24.49;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2384,255,0
chrX	416446	.	A	G	3079	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0256;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.66;SB=-1.744e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3112,342,0
chrX	416799	.	A	T	3428.01	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=24.84;SB=-1.789e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3428,360,0
chrX	417025	.	G	A	2379	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7950;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.03;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2412,267,0
chrX	417327	.	C	T	2074	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.57;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2107,219,0
chrX	417877	.	T	C	1823	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.23;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1856,207,0
chrX	418378	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.412;QD=20.31;ReadPosRankSum=1.679;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1353,147,0
chrX	418708	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.31;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1333,147,0
chrX	419062	.	A	G	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.824;DP=63;Dels=0.00;FS=9.904;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.533;QD=20.87;ReadPosRankSum=2.727;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:3,60:63:99:1348,150,0
chrX	419079	.	A	G	1205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.513;QD=22.31;ReadPosRankSum=1.668;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1238,132,0
chrX	419227	.	T	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.08;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1468,156,0
chrX	419362	.	G	A	2093	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.80;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2126,225,0
chrX	419397	.	G	A	1744	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.76;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1777,189,0
chrX	419759	.	C	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=9.6173;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.23;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1637,174,0
chrX	419761	.	G	C	1526	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.15;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1559,174,0
chrX	419940	.	A	T	1489	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.63;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1522,162,0
chrX	421902	.	T	C	2835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.866;DP=120;Dels=0.00;FS=5.265;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-2.084;QD=23.62;ReadPosRankSum=1.950;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:3,117:120:99:2868,287,0
chrX	421930	.	G	A	3012	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.90;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3045,315,0
chrX	421977	.	C	A	2366	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.0836;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=21.12;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2399,267,0
chrX	421994	.	G	A	2169	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.27;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2202,240,0
chrX	422023	.	A	G	2188	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.88;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2221,243,0
chrX	422126	.	G	A	2395	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.25;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2428,255,0
chrX	422219	.	T	C	2428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.610;DP=125;Dels=0.00;FS=18.702;HaplotypeScore=4.5034;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.006;QD=19.42;ReadPosRankSum=3.471;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:5,120:125:99:2461,243,0
chrX	422533	.	T	C	2537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=8.581;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.297;QD=21.14;ReadPosRankSum=2.347;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:2,118:120:99:2570,288,0
chrX	422597	.	G	A	3200	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.07;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:3233,351,0
chrX	422897	.	T	G	2154	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.54;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2187,237,0
chrX	423270	.	T	C	2231	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.25;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2264,249,0
chrX	423483	.	A	G	2687	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.02;SB=-1.414e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2720,306,0
chrX	423584	.	C	T	2248	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.42;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2281,243,0
chrX	423783	.	T	C	1912	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.90;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1945,216,0
chrX	424695	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=7.478;HaplotypeScore=5.8544;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.444;QD=19.89;ReadPosRankSum=2.384;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1525,165,0
chrX	424721	.	G	T	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.509;QD=20.35;ReadPosRankSum=0.503;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1315,138,0
chrX	424833	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.284;QD=19.61;ReadPosRankSum=1.691;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:1,85:88:99:1759,192,0
chrX	425092	.	T	A	1491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.107;QD=20.15;ReadPosRankSum=1.540;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1524,168,0
chrX	426287	.	C	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=21.36;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1614,174,0
chrX	426431	.	C	T	1128	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.14;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1161,126,0
chrX	428088	.	G	A	2218	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.64;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2251,237,0
chrX	428464	.	C	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.71;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1466,162,0
chrX	430214	.	C	T	2203	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.6614;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.44;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2236,237,0
chrX	436111	.	G	A	712	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:78:745,78,0
chrX	436479	.	G	A	385	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=16.74;SB=-6.792e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:45:418,45,0
chrX	437297	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.40;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1025,114,0
chrX	437758	.	C	G	1070	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=17.54;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1103,126,0
chrX	438505	.	G	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1185,129,0
chrX	438761	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5821;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.689;QD=20.89;ReadPosRankSum=1.518;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1725,183,0
chrX	438853	.	G	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.57;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1082,117,0
chrX	439624	.	C	T	1983	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.79;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2016,213,0
chrX	439651	.	G	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.34;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1760,186,0
chrX	440240	.	A	G	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.983;QD=20.52;ReadPosRankSum=1.685;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1572,168,0
chrX	440601	.	G	T	2141	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.27;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2174,240,0
chrX	440709	.	C	G	2007	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=24.48;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2040,219,0
chrX	440946	.	C	A	4106.01	PASS	AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.07;SB=-2.204e+03	GT:AD:DP:GQ:PL	1/1:0,178:178:99:4106,450,0
chrX	443746	.	G	A	2217	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.86;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2250,234,0
chrX	447373	.	G	A	1721	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.25;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1754,189,0
chrX	447433	.	G	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.21;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1543,165,0
chrX	447484	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1577,174,0
chrX	447638	.	G	A	1364	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=5.4869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.65;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1397,147,0
chrX	447807	.	T	A	2021	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.35;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2054,216,0
chrX	448029	.	C	T	1265	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2770;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.07;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1298,147,0
chrX	448328	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.76;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1376,147,0
chrX	448448	.	T	C	1371	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.2215;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.42;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1404,153,0
chrX	448869	.	T	C	14.20	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DP=35;Dels=0.00;FS=2.200;HaplotypeScore=29.3290;MLEAC=1;MLEAF=0.500;MQ=50.01;MQ0=0;MQRankSum=-1.915;QD=0.41;ReadPosRankSum=0.383;SB=-3.377e-02	GT:AD:DP:GQ:PL	0/1:32,3:35:19:44,0,19
chrX	448881	.	C	T	387	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=11.38;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:45:420,45,0
chrX	448916	.	G	T	631	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=14.67;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:664,72,0
chrX	448922	.	T	C	664	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=15.44;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:697,75,0
chrX	448936	.	T	C	777	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.27;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:810,90,0
chrX	449033	.	G	A	1110	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.12;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1143,120,0
chrX	449050	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.27;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1258,135,0
chrX	449256	.	T	C	1203	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=23.59;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1236,132,0
chrX	449403	.	G	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.94;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1845,195,0
chrX	449553	.	G	A	2601	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.22;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2634,279,0
chrX	449718	.	G	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.24;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1350,144,0
chrX	449762	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.23;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1222,138,0
chrX	449874	.	A	T	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.680;QD=18.77;ReadPosRankSum=1.688;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1535,159,0
chrX	450069	.	A	G	1575	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.18;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1608,183,0
chrX	450154	.	C	T	1867	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.8644;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=23.05;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1900,204,0
chrX	450386	.	C	A	2000	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2033,213,0
chrX	450608	.	G	A	2265	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.1970;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.41;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2298,249,0
chrX	450644	.	G	A	3101	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.32;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3134,336,0
chrX	450783	.	G	T	1311	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.57;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1344,144,0
chrX	450888	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.599;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.610;QD=23.35;ReadPosRankSum=1.683;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1691,186,0
chrX	451028	.	T	C	1639	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.49;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1672,180,0
chrX	451295	.	T	C	1583	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.29;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1616,180,0
chrX	451382	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.18;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1725,183,0
chrX	451436	.	T	C	1063	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.33;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1096,120,0
chrX	451760	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.297;QD=21.41;ReadPosRankSum=1.633;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1532,165,0
chrX	452016	.	C	T	3108	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.19;SB=-1.750e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:3141,330,0
chrX	452144	.	G	A	1319	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.94;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1352,144,0
chrX	452579	.	C	T	1846	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.3816;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.22;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1879,207,0
chrX	452823	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.59;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1717,189,0
chrX	452919	.	T	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.15;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1199,129,0
chrX	452924	.	T	C	1169	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.01;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1202,132,0
chrX	452975	.	C	T	1004	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8359;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=15.45;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1037,111,0
chrX	453145	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.879;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4432;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.531;QD=20.32;ReadPosRankSum=0.979;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1435,156,0
chrX	454999	.	G	A	1417	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1450,153,0
chrX	455246	.	A	C	1879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.459;QD=19.57;ReadPosRankSum=1.271;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:2,93:96:99:1912,210,0
chrX	455260	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.827;DP=99;Dels=0.00;FS=9.301;HaplotypeScore=7.6381;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.521;QD=19.31;ReadPosRankSum=2.664;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:3,96:99:99:1945,204,0
chrX	455334	.	C	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.91;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1545,165,0
chrX	455390	.	A	T	1940	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.56;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1973,210,0
chrX	455495	.	T	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.06;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1754,192,0
chrX	456997	.	T	A	1634	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.78;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1667,186,0
chrX	457744	.	C	T	345	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=13.80;SB=-7.612e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:39:378,39,0
chrX	458382	.	C	T	2192	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.8102;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.07;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2225,240,0
chrX	458564	.	T	C	1857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=93;Dels=0.00;FS=4.075;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.113;QD=19.97;ReadPosRankSum=1.694;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:1890,207,0
chrX	458980	.	T	C	3484.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.19;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3484,375,0
chrX	459216	.	G	C	2870	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.91;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,125:131:99:2903,327,0
chrX	459433	.	T	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.55;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1406,156,0
chrX	459734	.	A	G	2149	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.4337;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.875;QD=21.71;ReadPosRankSum=1.696;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:1,97:99:99:2182,240,0
chrX	459776	.	T	C	1389	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.356;QD=18.77;ReadPosRankSum=1.495;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1422,162,0
chrX	459804	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.377;QD=18.67;ReadPosRankSum=1.682;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1321,144,0
chrX	460047	.	A	G	1966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.2914;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.069;QD=22.34;ReadPosRankSum=2.828;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1999,216,0
chrX	460583	.	A	G	1986	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2019,216,0
chrX	460723	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.54;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1127,126,0
chrX	460780	.	T	C	1084	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.58;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1117,123,0
chrX	460801	.	G	A	1120	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.36;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1153,126,0
chrX	460988	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.08;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1468,159,0
chrX	461497	.	G	A	1364	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.49;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1397,156,0
chrX	461507	.	G	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=16.95;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1321,144,0
chrX	461695	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.755;DP=106;Dels=0.01;FS=0.000;HaplotypeScore=46.5458;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=2.265;QD=13.54;ReadPosRankSum=-0.598;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:3,102:105:99:1468,168,0
chrX	461863	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=24.26;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1537,162,0
chrX	462490	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.59;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1351,144,0
chrX	462583	.	T	C	1412	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=3.366;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;MQRankSum=-1.343;QD=15.87;ReadPosRankSum=1.654;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1445,156,0
chrX	462586	.	G	C	1351	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=14.68;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1384,156,0
chrX	462605	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;MQRankSum=-0.563;QD=16.35;ReadPosRankSum=1.690;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1390,153,0
chrX	462634	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=15.27;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1239,138,0
chrX	462687	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=16.52;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1454,162,0
chrX	462689	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=16.35;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1439,162,0
chrX	462713	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=14.10;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,102:104:99:1499,159,0
chrX	462835	.	G	T	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=0.46;SB=-6.008e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:6:56,6,0
chrX	462930	.	G	A	1103	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=22.98;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1136,120,0
chrX	463005	.	C	T	1026	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.2986;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.65;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1059,117,0
chrX	463222	.	C	T	1117	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.82;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1150,120,0
chrX	464543	.	C	G	552	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.00;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:63:585,63,0
chrX	465795	.	G	A	1900	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.10;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1933,204,0
chrX	465816	.	T	G	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.603;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.698;QD=16.74;ReadPosRankSum=1.664;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,100:103:99:1757,192,0
chrX	466454	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1156,123,0
chrX	467010	.	C	G	557	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=13.92;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,38:40:66:590,66,0
chrX	467107	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9377;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=16.78;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1560,162,0
chrX	467162	.	A	G	1316	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.087;QD=16.45;ReadPosRankSum=1.689;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1349,144,0
chrX	467199	.	A	G	1557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=9.810;HaplotypeScore=5.6205;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.284;QD=22.90;ReadPosRankSum=1.681;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1590,180,0
chrX	467355	.	G	A	821	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:854,90,0
chrX	467559	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.25;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1511,171,0
chrX	467589	.	C	T	1723	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.93;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1756,186,0
chrX	467640	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=3.745;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.192;QD=17.29;ReadPosRankSum=1.655;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1606,177,0
chrX	467886	.	T	C	1708	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.09;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1741,195,0
chrX	468087	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.38;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1358,144,0
chrX	468120	.	C	T	694	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=14.16;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:727,81,0
chrX	468122	.	A	G	752	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=15.35;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:785,87,0
chrX	468315	.	A	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=9.4396;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.64;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1065,120,0
chrX	468855	.	C	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.30;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1452,153,0
chrX	468923	.	G	A	1665	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.9884;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.59;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1698,189,0
chrX	468966	.	G	A	1808	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.90;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1841,192,0
chrX	469442	.	G	A	1005	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.33;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1038,111,0
chrX	469453	.	C	T	842	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=16.19;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:875,93,0
chrX	469520	.	T	C	925	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=15.42;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:958,105,0
chrX	469702	.	A	G	1784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121;DP=98;Dels=0.00;FS=2.530;HaplotypeScore=15.6694;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.132;QD=18.20;ReadPosRankSum=0.835;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:3,91:98:99:1817,207,0
chrX	470299	.	G	A	1125	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.46;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1158,120,0
chrX	470664	.	T	C	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=13.3664;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.202;QD=19.76;ReadPosRankSum=1.691;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1732,189,0
chrX	470737	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.83;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1580,171,0
chrX	470777	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.00;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1439,165,0
chrX	471093	.	G	A	1559	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.56;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1592,171,0
chrX	471486	.	T	A	1324	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.6358;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.06;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1357,147,0
chrX	471532	.	C	T	1208	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.69;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1241,129,0
chrX	471770	.	T	C	427	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.57;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:51:460,51,0
chrX	472011	.	A	G	1148	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-1.135;QD=19.79;ReadPosRankSum=1.673;SB=-1.850e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1181,129,0
chrX	472034	.	C	T	992	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=19.08;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1025,105,0
chrX	472246	.	C	T	817	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=24.76;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:90:850,90,0
chrX	472296	.	C	T	912	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.10;MQ0=0;QD=21.21;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:945,99,0
chrX	472462	.	C	T	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DP=40;Dels=0.00;FS=4.855;HaplotypeScore=13.0843;MLEAC=1;MLEAF=0.500;MQ=27.85;MQ0=1;MQRankSum=-1.987;QD=0.88;ReadPosRankSum=3.527;SB=-5.007e+00	GT:AD:DP:GQ:PL	0/1:30,9:40:65:65,0,449
chrX	484073	.	A	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=23.12;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1952,213,0
chrX	484353	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.73;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1292,138,0
chrX	484372	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.98;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1684,186,0
chrX	484466	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1448,162,0
chrX	484576	.	C	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.97;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1395,147,0
chrX	484754	.	T	A	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=3.021;HaplotypeScore=12.4218;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=1.217;QD=21.73;ReadPosRankSum=2.357;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1793,189,0
chrX	485198	.	G	T	1697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=79;Dels=0.00;FS=4.601;HaplotypeScore=6.6648;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.547;QD=21.48;ReadPosRankSum=1.455;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1730,183,0
chrX	486442	.	A	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1545,165,0
chrX	487923	.	G	A	2051	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.05;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2084,219,0
chrX	487992	.	A	G	1967	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.7676;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.71;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2000,216,0
chrX	488230	.	T	C	1392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=75;Dels=0.00;FS=10.926;HaplotypeScore=9.0884;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.689;QD=18.56;ReadPosRankSum=2.906;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1425,162,0
chrX	489013	.	C	T	2356	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.65;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2389,252,0
chrX	489978	.	C	G	1944	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4570;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.60;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1977,219,0
chrX	490357	.	A	T	1696	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.74;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1729,195,0
chrX	490924	.	T	C	2177	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2378;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.41;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2210,240,0
chrX	491146	.	C	T	788	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.70;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:821,87,0
chrX	491749	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.87;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1203,126,0
chrX	491821	.	G	C	2495	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.79;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2528,279,0
chrX	492413	.	C	T	1835	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=26.59;SB=-1.830e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1868,198,0
chrX	492486	.	A	C	1204	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.72;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1237,132,0
chrX	492861	.	G	A	881	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=17.98;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:914,99,0
chrX	493614	.	C	T	1597	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.24;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1630,183,0
chrX	494994	.	C	G	1918	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,91:95:99:1951,219,0
chrX	495112	.	T	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.47;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1665,177,0
chrX	495252	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=3.651;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.374;QD=23.58;ReadPosRankSum=1.664;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1259,138,0
chrX	495458	.	G	A	1639	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.85;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1672,177,0
chrX	496029	.	T	C	2141	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.78;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2174,234,0
chrX	497589	.	A	G	678	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.38;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:78:711,78,0
chrX	497995	.	A	G	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.056;QD=20.32;ReadPosRankSum=1.676;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1313,144,0
chrX	498149	.	A	G	1403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.215;QD=20.94;ReadPosRankSum=1.681;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1436,165,0
chrX	498452	.	G	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.82;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1303,138,0
chrX	498551	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.66;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1166,123,0
chrX	498791	.	G	A	1719	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.32;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1752,189,0
chrX	499118	.	G	A	1840	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.72;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1873,195,0
chrX	499154	.	T	C	2070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=90;Dels=0.00;FS=6.109;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.506;QD=23.00;ReadPosRankSum=2.922;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:3,87:90:99:2103,228,0
chrX	499382	.	G	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5198;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.24;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1939,204,0
chrX	500192	.	A	G	1438	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.57;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1471,159,0
chrX	500362	.	G	A	1785	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6706;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.18;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1818,189,0
chrX	500414	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.0881;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.89;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1746,189,0
chrX	500582	.	T	G	1151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=3.680;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.124;QD=20.55;ReadPosRankSum=1.670;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1184,129,0
chrX	500836	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.013;QD=21.25;ReadPosRankSum=1.667;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1159,132,0
chrX	501153	.	C	A	1219	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=19.98;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1252,129,0
chrX	501169	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.17;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1007,111,0
chrX	501283	.	C	T	851	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.79;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:884,93,0
chrX	501427	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.93;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1239,132,0
chrX	501448	.	A	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.59;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1134,129,0
chrX	501565	.	G	A	1007	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.42;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1040,111,0
chrX	501706	.	T	A	1619	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.13;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1652,177,0
chrX	501961	.	C	T	951	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.61;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:984,102,0
chrX	502139	.	G	C	2260	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.79;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2293,246,0
chrX	502163	.	G	A	1768	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.83;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1801,192,0
chrX	502192	.	G	A	1369	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.75;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1402,147,0
chrX	502260	.	G	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.52;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1367,147,0
chrX	502294	.	A	G	1212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.937;QD=19.87;ReadPosRankSum=1.448;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1245,138,0
chrX	502465	.	C	T	1952	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.72;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1985,213,0
chrX	502471	.	C	T	2067	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.07;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2100,222,0
chrX	502687	.	C	T	2281	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.32;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2314,243,0
chrX	502696	.	G	A	2210	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.26;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,117:121:99:2243,249,0
chrX	502798	.	T	C	2760	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.62;SB=-1.566e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2793,303,0
chrX	502945	.	C	T	2602	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4473;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.32;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2635,279,0
chrX	503332	.	C	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.48;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1455,159,0
chrX	503640	.	G	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3644;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.38;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1337,150,0
chrX	503779	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.74;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1526,165,0
chrX	503880	.	G	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.97;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1171,129,0
chrX	503940	.	C	T	1326	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.42;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1359,150,0
chrX	504074	.	G	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.45;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1453,153,0
chrX	504158	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.143;QD=20.19;ReadPosRankSum=1.659;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:1002,111,0
chrX	504644	.	T	C	1677	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1710,183,0
chrX	504709	.	T	C	1823	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.23;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1856,204,0
chrX	505150	.	G	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.84;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1917,213,0
chrX	505156	.	G	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=20.52;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1859,192,0
chrX	505283	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.83;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1765,189,0
chrX	505297	.	A	T	1752	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=2.685;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.257;QD=19.25;ReadPosRankSum=2.314;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1785,186,0
chrX	505396	.	C	T	2284	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.15;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2317,258,0
chrX	505473	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.73;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2006,225,0
chrX	505510	.	G	A	2211	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=21.89;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2244,240,0
chrX	505537	.	G	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.44;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1893,195,0
chrX	505548	.	C	T	1821	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=20.23;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1854,195,0
chrX	505598	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.66;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1488,165,0
chrX	505992	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.31;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1684,177,0
chrX	506424	.	G	A	3276.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.59;SB=-1.852e+03	GT:AD:DP:GQ:PL	1/1:0,143:145:99:3276,348,0
chrX	506512	.	G	C	2196	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.91;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2229,246,0
chrX	506526	.	G	C	1974	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=20.56;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2007,219,0
chrX	506574	.	T	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=20.49;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1611,177,0
chrX	506707	.	G	A	2973	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.52;SB=-1.632e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3006,330,0
chrX	506903	.	T	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=18.77;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1347,150,0
chrX	506909	.	G	A	1277	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=17.99;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1310,141,0
chrX	506929	.	C	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.52;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1589,174,0
chrX	507303	.	G	T	2037	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.79;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2070,216,0
chrX	507335	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.37;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1912,210,0
chrX	507430	.	C	A	1150	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.30;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1183,123,0
chrX	507569	.	C	T	2927	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.5015;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.84;SB=-1.523e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2960,312,0
chrX	507730	.	A	G	1146	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=18.79;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1179,129,0
chrX	507744	.	T	C	981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.433;QD=17.21;ReadPosRankSum=1.670;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1014,111,0
chrX	508366	.	C	G	2827	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8669;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.58;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2860,315,0
chrX	508514	.	T	A	1363	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.75;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1396,147,0
chrX	508525	.	G	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.03;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=16.96;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1356,144,0
chrX	508529	.	A	C	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.225;DP=79;Dels=0.00;FS=15.756;HaplotypeScore=7.0208;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.654;QD=15.67;ReadPosRankSum=3.271;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:4,74:79:99:1271,141,0
chrX	508627	.	T	C	968	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.60;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,52:55:99:1001,111,0
chrX	508682	.	T	C	1801	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.76;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1834,198,0
chrX	508859	.	C	T	1147	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.24;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1180,126,0
chrX	509110	.	G	A	1352	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.78;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1385,162,0
chrX	509235	.	C	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.6521;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.57;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1082,117,0
chrX	509746	.	C	T	2129	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.72;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2162,225,0
chrX	510183	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.67;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1680,180,0
chrX	510201	.	A	T	1595	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.967;QD=20.71;ReadPosRankSum=1.597;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1628,174,0
chrX	510323	.	G	A	1417	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.24;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1450,153,0
chrX	510389	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.32;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1638,174,0
chrX	510440	.	C	T	1899	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.44;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1932,207,0
chrX	510548	.	G	A	1760	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.51;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1793,186,0
chrX	510597	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.466;QD=19.86;ReadPosRankSum=1.679;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1324,147,0
chrX	510695	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.97;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1631,177,0
chrX	510812	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.16;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1784,189,0
chrX	510871	.	G	A	1933	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.29;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1966,210,0
chrX	510914	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.09;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1657,183,0
chrX	511245	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.67;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1333,144,0
chrX	511262	.	C	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.43;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1194,132,0
chrX	511432	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1382;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.81;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1407,147,0
chrX	511654	.	T	C	1871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.987;QD=23.68;ReadPosRankSum=1.688;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1904,204,0
chrX	511908	.	G	A	993	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=16.02;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1026,114,0
chrX	511909	.	A	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=15.92;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1036,114,0
chrX	511944	.	G	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=16.37;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1686,177,0
chrX	511949	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.25;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1968,207,0
chrX	513764	.	A	G	1826	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.4061;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.196;QD=21.74;ReadPosRankSum=1.691;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1859,207,0
chrX	513807	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.49;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1540,168,0
chrX	513858	.	T	C	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.281;QD=21.93;ReadPosRankSum=1.685;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1656,180,0
chrX	513874	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.54;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1697,183,0
chrX	514236	.	A	G	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.504;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.074;QD=20.62;ReadPosRankSum=0.680;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1662,168,0
chrX	514320	.	A	G	2095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=13.8914;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.686;QD=21.82;ReadPosRankSum=1.696;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2128,228,0
chrX	514465	.	G	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.06;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1377,147,0
chrX	514783	.	A	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.75;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1327,141,0
chrX	514837	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.448;QD=19.38;ReadPosRankSum=1.619;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1215,132,0
chrX	514978	.	T	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.00;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1229,135,0
chrX	515263	.	C	T	1752	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.7642;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.91;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1785,189,0
chrX	515338	.	T	C	1632	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.47;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1665,180,0
chrX	515351	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4065;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.59;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1660,186,0
chrX	515450	.	C	T	2274	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.20;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,96:98:99:2307,243,0
chrX	515495	.	C	T	2109	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1070;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.24;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2142,222,0
chrX	516190	.	C	T	1150	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.25;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1183,132,0
chrX	516370	.	T	G	3937.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7884;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.15;SB=-1.654e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3937,423,0
chrX	516436	.	G	A	2638	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.14;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2671,282,0
chrX	516605	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=17.60;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1529,165,0
chrX	516609	.	C	G	1455	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=16.72;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1488,168,0
chrX	516694	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=0.548;QD=17.85;ReadPosRankSum=1.688;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1443,156,0
chrX	516695	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=18.00;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1437,156,0
chrX	516707	.	C	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.87;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1302,138,0
chrX	516831	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.48;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1487,156,0
chrX	516847	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=74;Dels=0.00;FS=6.570;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.817;QD=18.97;ReadPosRankSum=2.383;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1437,159,0
chrX	517094	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=19.90;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1008,111,0
chrX	517244	.	G	C	2318	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.73;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2351,261,0
chrX	517494	.	T	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.73;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1887,210,0
chrX	517501	.	C	T	2064	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.04;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2097,216,0
chrX	517771	.	A	C	2221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.474;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=1.400;QD=23.38;ReadPosRankSum=0.295;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,93:95:99:2254,230,0
chrX	517900	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.46;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1399,150,0
chrX	517926	.	G	C	1257	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.27;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1290,141,0
chrX	518283	.	A	T	825	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=24.26;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:90:858,90,0
chrX	518442	.	G	C	69.51	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=5.79;SB=-1.295e+02	GT:AD:DP:GQ:PL	1/1:0,12:12:12:102,12,0
chrX	518451	.	C	T	65.51	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=4.68;SB=-4.451e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:12:98,12,0
chrX	518465	.	A	G	239	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=11.95;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:33:272,33,0
chrX	518469	.	C	T	303	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=11.65;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:42:336,42,0
chrX	518494	.	G	C	556	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;QD=15.44;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:589,66,0
chrX	518528	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=20.07;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1438,156,0
chrX	518612	.	G	A	843	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=16.53;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:876,96,0
chrX	518647	.	G	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.67;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1189,129,0
chrX	518721	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.50;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1002,108,0
chrX	519310	.	A	T	675	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=12.27;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:75:708,75,0
chrX	519377	.	G	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.03;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1829,192,0
chrX	519454	.	C	T	2083	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.93;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2116,222,0
chrX	519608	.	G	A	3223.06	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.6682;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=24.60;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3256,363,0
chrX	519671	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=16.07;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:981,108,0
chrX	519683	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.22;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1272,141,0
chrX	519770	.	C	T	2496	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.29;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2529,270,0
chrX	520202	.	T	C	1089	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.15;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1122,123,0
chrX	520244	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.78;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1342,150,0
chrX	521093	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1169,123,0
chrX	521645	.	T	G	2130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=95;Dels=0.00;FS=2.604;HaplotypeScore=10.2072;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.923;QD=22.42;ReadPosRankSum=2.880;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:3,89:95:99:2163,240,0
chrX	522038	.	G	A	2770	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.16;SB=-1.610e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2803,294,0
chrX	522284	.	T	C	1966	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4376;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.69;SB=-1.198e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1999,225,0
chrX	522481	.	C	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.95;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,87:93:99:1702,186,0
chrX	522608	.	T	C	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.791;HaplotypeScore=13.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.513;QD=18.60;ReadPosRankSum=1.601;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1521,174,0
chrX	523867	.	T	G	1670	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.97;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1703,183,0
chrX	524113	.	T	G	1274	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.60;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1307,144,0
chrX	524341	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.22;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1263,135,0
chrX	524370	.	T	C	759	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=16.15;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:90:792,90,0
chrX	524404	.	G	A	732	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.85;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:765,81,0
chrX	524412	.	C	T	754	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=16.04;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:787,87,0
chrX	524468	.	T	G	955	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.70;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:988,105,0
chrX	524506	.	T	C	1046	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.35;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1079,114,0
chrX	524618	.	G	A	930	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.67;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:963,102,0
chrX	525745	.	C	A	247	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=17.8107;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=6.86;SB=-8.202e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:30:280,30,0
chrX	526234	.	C	G	3646.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.68;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,152:154:99:3646,399,0
chrX	526730	.	T	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.75;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1064,114,0
chrX	527538	.	A	G	618	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.61;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:72:651,72,0
chrX	528102	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.846;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.370;QD=18.42;ReadPosRankSum=-1.732;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1617,157,0
chrX	528639	.	A	T	2828	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.9798;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.37;SB=-1.629e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2861,300,0
chrX	528849	.	G	A	2801	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.41;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2834,297,0
chrX	528913	.	A	G	2446	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.84;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2479,270,0
chrX	529045	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.56;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1319,144,0
chrX	529184	.	G	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=21.88;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1324,138,0
chrX	529296	.	A	T	1487	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=16.16;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1520,162,0
chrX	529307	.	G	A	1349	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=16.45;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1382,147,0
chrX	529308	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=16.99;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1409,147,0
chrX	529362	.	G	A	1017	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=13.04;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1050,114,0
chrX	529374	.	A	G	998	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4872;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=14.46;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1031,111,0
chrX	529383	.	A	G	974	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;MQRankSum=-0.323;QD=16.23;ReadPosRankSum=1.615;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1007,111,0
chrX	529442	.	T	C	951	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.23;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:984,108,0
chrX	529470	.	T	C	874	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=1.053;QD=17.14;ReadPosRankSum=1.664;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:907,99,0
chrX	529486	.	A	G	772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-0.064;QD=14.30;ReadPosRankSum=1.668;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:87:805,87,0
chrX	529522	.	A	T	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=35.9251;MLEAC=2;MLEAF=1.00;MQ=34.33;MQ0=0;QD=0.53;SB=-6.208e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:6:57,6,0
chrX	529549	.	T	C	548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=2.7648;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=0;MQRankSum=-1.630;QD=8.06;ReadPosRankSum=1.681;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:66:581,66,0
chrX	529553	.	C	T	702	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.47;MQ0=0;QD=9.75;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:78:735,78,0
chrX	529640	.	C	T	1753	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.38;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1786,195,0
chrX	529795	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=22.15;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1251,132,0
chrX	529812	.	A	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=22.25;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1457,159,0
chrX	530079	.	T	C	868	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.70;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:901,99,0
chrX	530523	.	G	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.35;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1506,159,0
chrX	530814	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1720,180,0
chrX	531033	.	A	G	1966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.832;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.732;QD=22.60;ReadPosRankSum=1.692;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1999,225,0
chrX	531048	.	C	T	1853	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1867;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.82;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1886,201,0
chrX	531409	.	C	A	3915.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=10.1111;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=25.26;SB=-1.846e+03	GT:AD:DP:GQ:PL	1/1:0,152:155:99:3915,412,0
chrX	531521	.	G	A	3427.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.31;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:3427,357,0
chrX	531568	.	C	T	2737	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=24.88;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2770,297,0
chrX	531599	.	T	G	2521	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.394;QD=24.96;ReadPosRankSum=1.698;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2554,273,0
chrX	531713	.	T	C	3163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.6761;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=1.684;QD=21.97;ReadPosRankSum=1.708;SB=-1.749e+03	GT:AD:DP:GQ:PL	1/1:1,143:144:99:3196,357,0
chrX	531747	.	T	G	2690	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=19.08;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:2723,303,0
chrX	531751	.	T	C	2575	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=20.12;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2608,279,0
chrX	531791	.	A	G	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=-1.676;QD=14.31;ReadPosRankSum=2.393;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1264,147,0
chrX	531794	.	T	C	1282	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.79;MQ0=0;QD=15.26;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1315,150,0
chrX	531807	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=13.84;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1362,150,0
chrX	531814	.	T	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.24;MQ0=0;QD=13.08;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1171,126,0
chrX	531946	.	C	T	2640	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=38.24;MQ0=0;QD=16.71;SB=-1.534e+03	GT:AD:DP:GQ:PL	1/1:0,154:158:99:2673,297,0
chrX	531953	.	G	A	2892	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=17.32;SB=-1.562e+03	GT:AD:DP:GQ:PL	1/1:0,167:167:99:2925,315,0
chrX	531961	.	G	A	2384	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.72;MQ0=0;QD=14.72;SB=-1.809e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:2417,261,0
chrX	531967	.	G	A	2405	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=16.25;SB=-2.002e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:2438,261,0
chrX	531989	.	C	T	2331	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=15.86;SB=-1.881e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:2364,255,0
chrX	532000	.	C	A	1603	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.92;MQ0=0;QD=13.25;SB=-1.540e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:1636,174,0
chrX	532003	.	G	A	1618	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.26;MQ0=0;QD=13.48;SB=-1.515e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:1651,174,0
chrX	532388	.	A	G	1198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;MQRankSum=1.263;QD=19.64;ReadPosRankSum=1.674;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1231,135,0
chrX	532916	.	T	A	1770	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.03;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1803,195,0
chrX	533243	.	C	T	1669	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.18;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1702,180,0
chrX	533424	.	A	C	1876	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.62;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1909,210,0
chrX	533786	.	T	C	1696	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=8.042;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.508;QD=21.20;ReadPosRankSum=2.327;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1729,189,0
chrX	534756	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.48;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1241,135,0
chrX	535430	.	T	C	2457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=107;Dels=0.00;FS=7.014;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.231;QD=22.96;ReadPosRankSum=2.335;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2490,270,0
chrX	535873	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.55;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1533,168,0
chrX	536259	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.02;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1395,153,0
chrX	536352	.	A	G	1560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.5227;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.185;QD=20.26;ReadPosRankSum=1.687;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1593,174,0
chrX	537007	.	G	A	2572	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.17;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2605,288,0
chrX	537207	.	A	G	2519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.577;QD=22.29;ReadPosRankSum=1.701;SB=-1.370e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2552,279,0
chrX	537324	.	G	C	2108	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.43;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2141,234,0
chrX	537704	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=93;Dels=0.00;FS=7.297;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.710;QD=20.03;ReadPosRankSum=2.369;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:2,90:93:99:1896,207,0
chrX	537808	.	C	T	1260	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=2;QD=17.26;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1293,138,0
chrX	537810	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=2;QD=18.74;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1401,147,0
chrX	538006	.	G	A	3425.01	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=20.76;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:0,164:165:99:3425,378,0
chrX	538044	.	T	C	2307	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=23.07;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2340,267,0
chrX	538049	.	C	T	2130	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=22.66;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2163,228,0
chrX	538084	.	A	G	1053	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;QD=20.65;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1086,117,0
chrX	538523	.	T	C	1561	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.597;HaplotypeScore=79.1239;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;MQRankSum=0.100;QD=17.94;ReadPosRankSum=1.692;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1594,180,0
chrX	538701	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=21.65;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1960,210,0
chrX	538944	.	T	C	1862	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.91;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1895,207,0
chrX	539053	.	A	G	2265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=4.508;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.000;QD=23.59;ReadPosRankSum=1.624;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2298,246,0
chrX	539146	.	A	G	1788	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-0.590;QD=18.82;ReadPosRankSum=2.266;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:2,92:95:99:1821,204,0
chrX	539198	.	C	T	2835	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0753;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=21.64;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2868,312,0
chrX	539272	.	A	G	2876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;DP=141;Dels=0.00;FS=3.004;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;MQRankSum=-0.026;QD=20.40;ReadPosRankSum=2.328;SB=-1.711e+03	GT:AD:DP:GQ:PL	1/1:2,139:141:99:2909,327,0
chrX	539275	.	G	A	2813	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=20.53;SB=-1.745e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2846,300,0
chrX	539286	.	G	A	2425	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=18.95;SB=-1.623e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2458,267,0
chrX	539337	.	T	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=17.42;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1514,162,0
chrX	539524	.	T	G	756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=36.96;MQ0=0;MQRankSum=-1.565;QD=12.19;ReadPosRankSum=1.285;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:87:789,87,0
chrX	539608	.	A	T	2035	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.57;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2068,231,0
chrX	539652	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=74;Dels=0.01;FS=9.779;HaplotypeScore=6.8596;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.736;QD=21.32;ReadPosRankSum=2.848;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1611,177,0
chrX	539678	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.95;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1350,150,0
chrX	539780	.	C	T	830	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.06;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:863,90,0
chrX	539960	.	C	A	2294	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.8120;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.94;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2327,246,0
chrX	540022	.	C	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.60;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1221,135,0
chrX	540077	.	T	C	1523	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.666;QD=23.43;ReadPosRankSum=1.679;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1556,171,0
chrX	540125	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.16;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1717,183,0
chrX	540433	.	A	G	1815	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=21.10;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1848,210,0
chrX	540570	.	T	C	2040	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=20.82;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,95:98:99:2073,222,0
chrX	540786	.	A	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=6;Dels=0.00;FS=3.979;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;MQRankSum=-1.537;QD=3.63;ReadPosRankSum=1.537;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,3:6:6:53,6,0
chrX	540788	.	C	T	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=11.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:55,6,0
chrX	540972	.	A	T	1624	filter	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=19.80;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1657,177,0
chrX	541095	.	T	C	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=10.90;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chrX	541163	.	G	A	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=12.89;SB=-2.776e+01	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chrX	541164	.	T	C	23.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=11.89;SB=-2.576e+01	GT:AD:DP:GQ:PL	1/1:0,2:2:6:55,6,0
chrX	541169	.	A	T	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=12.39;SB=-2.676e+01	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chrX	541170	.	G	A	26.77	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;QD=13.39;SB=-2.776e+01	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
chrX	541613	.	A	T	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=12.5388;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;MQRankSum=0.378;QD=16.72;ReadPosRankSum=2.394;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1538,165,0
chrX	541972	.	T	C	1050	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.42;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1083,117,0
chrX	542131	.	C	T	1962	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=94;Dels=0.00;FS=3.156;HaplotypeScore=8.2663;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.438;QD=20.87;ReadPosRankSum=1.618;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1995,213,0
chrX	542218	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.56;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1423,150,0
chrX	542293	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.25;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1428,156,0
chrX	543721	.	A	G	2647	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=1;QD=22.43;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2680,297,0
chrX	543776	.	T	C	2165	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.09;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2198,237,0
chrX	543800	.	G	C	2110	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.49;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2143,234,0
chrX	543878	.	T	G	2228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.327;DP=111;Dels=0.00;FS=9.131;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.236;QD=20.07;ReadPosRankSum=3.262;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:4,104:111:99:2261,246,0
chrX	544304	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.53;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1903,198,0
chrX	544322	.	C	G	1667	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.58;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1700,183,0
chrX	544484	.	C	T	1827	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.84;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1860,201,0
chrX	544523	.	T	C	1841	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.73;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1874,210,0
chrX	545038	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.993;QD=16.33;ReadPosRankSum=1.686;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1258,138,0
chrX	545209	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.123;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=-0.888;QD=21.81;ReadPosRankSum=1.688;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1734,186,0
chrX	545233	.	C	T	1962	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=20.87;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1995,213,0
chrX	545249	.	A	G	1889	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.08;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1922,213,0
chrX	545260	.	G	T	1769	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.62;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1802,192,0
chrX	546064	.	G	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.20;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1134,120,0
chrX	546078	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.540;QD=17.75;ReadPosRankSum=1.675;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1116,123,0
chrX	546103	.	T	C	1252	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.52;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1285,138,0
chrX	546527	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.52;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1712,186,0
chrX	546746	.	T	A	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.347;QD=20.86;ReadPosRankSum=1.684;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1535,165,0
chrX	547200	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.0286;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.00;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1591,168,0
chrX	547820	.	C	A	1703	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.83;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1736,183,0
chrX	547987	.	A	C	1604	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.1293;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.25;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1637,183,0
chrX	548463	.	G	A	2365	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=19.55;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2398,255,0
chrX	548476	.	C	T	2005	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=19.28;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2038,219,0
chrX	548585	.	A	G	2766	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.2347;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.31;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2799,303,0
chrX	548666	.	A	G	2519	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.01;FS=3.996;HaplotypeScore=8.2705;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=-0.785;QD=19.53;ReadPosRankSum=1.705;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:1,127:128:99:2552,282,0
chrX	548667	.	A	T	2637	SnpCluster	AC=2;AF=1.00;AN=2;DP=130;Dels=0.01;FS=0.000;HaplotypeScore=8.3140;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=20.28;SB=-1.470e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2670,279,0
chrX	548670	.	A	G	2503	SnpCluster	AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=9.1461;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=18.82;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2536,282,0
chrX	548711	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=15.53;SB=-1.381e+03	GT:AD:DP:GQ:PL	1/1:0,129:131:99:2068,225,0
chrX	548990	.	A	G	2168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;MQRankSum=0.339;QD=22.35;ReadPosRankSum=1.696;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2201,243,0
chrX	549037	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=18.45;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1232,132,0
chrX	549350	.	G	A	2010	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.10;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,96:100:99:2043,213,0
chrX	549370	.	T	C	1908	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.97;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1941,216,0
chrX	549542	.	T	C	854	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.33;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:887,99,0
chrX	549808	.	G	A	1169	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.27;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1202,129,0
chrX	550048	.	G	T	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=0.34;SB=-5.628e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:6:48,6,0
chrX	550227	.	G	C	757	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=16.82;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:790,87,0
chrX	550237	.	T	C	800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-0.115;QD=17.39;ReadPosRankSum=1.655;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:96:833,96,0
chrX	550314	.	G	T	929	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.53;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:962,105,0
chrX	550333	.	T	C	968	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.266;QD=18.62;ReadPosRankSum=1.666;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1001,111,0
chrX	550527	.	G	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.92;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1267,135,0
chrX	550587	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.60;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1621,171,0
chrX	550609	.	A	G	1280	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=18.29;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1313,144,0
chrX	550960	.	T	C	2224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.204;QD=21.80;ReadPosRankSum=1.698;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2257,252,0
chrX	551398	.	C	T	1904	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.3799;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.27;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,116:117:99:1937,213,0
chrX	551409	.	C	A	1927	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=17.21;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:1960,204,0
chrX	551422	.	C	T	1786	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=15.67;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1819,198,0
chrX	551577	.	C	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1198,129,0
chrX	551614	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=58;Dels=0.00;FS=3.602;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.480;QD=21.50;ReadPosRankSum=1.669;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,54:58:99:1280,141,0
chrX	551969	.	C	T	1954	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.54;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1987,210,0
chrX	552004	.	C	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.91;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2005,213,0
chrX	552130	.	G	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=22.16;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2005,216,0
chrX	552134	.	G	A	1792	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.59;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1825,189,0
chrX	552241	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.15;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1484,162,0
chrX	552441	.	T	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=16.63;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1347,150,0
chrX	552448	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.23;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1510,165,0
chrX	552529	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.40;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1359,153,0
chrX	552584	.	A	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.58;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1482,159,0
chrX	552593	.	T	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.77;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1347,147,0
chrX	552643	.	C	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.25;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1188,126,0
chrX	552697	.	A	G	1061	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.57;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1094,123,0
chrX	552709	.	G	A	1108	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.09;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1141,120,0
chrX	552808	.	T	C	760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=3.378;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.733;QD=20.54;ReadPosRankSum=1.545;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:87:793,87,0
chrX	552913	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.86;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1432,159,0
chrX	552966	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.137;QD=19.10;ReadPosRankSum=1.550;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1504,171,0
chrX	552967	.	G	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.61;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1543,171,0
chrX	553200	.	G	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=26.09;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1181,126,0
chrX	553379	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.52;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1798,198,0
chrX	553521	.	T	G	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=1.039;QD=22.12;ReadPosRankSum=1.689;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1803,201,0
chrX	553533	.	C	T	1889	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.49;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1922,207,0
chrX	553545	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=21.00;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1881,204,0
chrX	553604	.	T	C	825	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=13.31;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:93:858,93,0
chrX	553611	.	T	C	784	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=13.29;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:90:817,90,0
chrX	553617	.	G	A	748	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=13.36;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:81:781,81,0
chrX	553641	.	T	C	742	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=14.00;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:775,84,0
chrX	553782	.	C	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.18;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1770,189,0
chrX	553828	.	T	C	2797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.175;QD=21.52;ReadPosRankSum=1.678;SB=-1.442e+03	GT:AD:DP:GQ:PL	1/1:1,128:130:99:2830,306,0
chrX	553911	.	G	T	2993	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.85;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,128:131:99:3026,318,0
chrX	554517	.	A	T	1502	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.86;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1535,165,0
chrX	554825	.	C	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=22.57;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1997,219,0
chrX	554884	.	C	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.01;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1630,180,0
chrX	554895	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.24;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1649,183,0
chrX	554957	.	C	T	2308	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.07;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2341,246,0
chrX	554999	.	C	T	3090	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.55;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3123,345,0
chrX	555162	.	G	A	975	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.41;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1008,108,0
chrX	555166	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=8.7530;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.07;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1023,114,0
chrX	555458	.	G	A	3318.01	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.4302;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.87;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,137:139:99:3318,351,0
chrX	555723	.	T	C	4402.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=10.6994;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.840;QD=22.12;ReadPosRankSum=1.697;SB=-2.413e+03	GT:AD:DP:GQ:PL	1/1:1,197:199:99:4402,474,0
chrX	556345	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=16.38;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1163,126,0
chrX	556363	.	T	C	986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.824;QD=15.90;ReadPosRankSum=1.675;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1019,111,0
chrX	556483	.	C	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1316,147,0
chrX	556720	.	A	G	1846	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=4.205;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.206;QD=23.37;ReadPosRankSum=1.513;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1879,207,0
chrX	556864	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5121;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.10;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1536,165,0
chrX	557026	.	G	A	2273	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.85;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2306,243,0
chrX	557209	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9429;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.41;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1564,168,0
chrX	557221	.	C	T	1072	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=15.76;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1105,117,0
chrX	557329	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.558;QD=20.61;ReadPosRankSum=-1.204;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1249,110,0
chrX	557590	.	A	G	1887	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.44;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1920,207,0
chrX	557648	.	C	G	2166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.480;DP=98;Dels=0.00;FS=5.509;HaplotypeScore=9.7042;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.660;QD=22.10;ReadPosRankSum=1.335;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:1,95:98:99:2199,252,0
chrX	558226	.	T	C	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.209;HaplotypeScore=2.8787;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;MQRankSum=-1.370;QD=20.31;ReadPosRankSum=-1.474;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1394,153,0
chrX	558253	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.36;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1571,168,0
chrX	558314	.	T	C	1831	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.29;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1864,201,0
chrX	558558	.	A	G	951	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.29;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:984,108,0
chrX	558646	.	T	A	594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=46;Dels=0.02;FS=6.532;HaplotypeScore=7.5698;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.115;QD=12.91;ReadPosRankSum=1.578;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:69:627,69,0
chrX	558652	.	A	G	597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.7414;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=-0.394;QD=13.57;ReadPosRankSum=1.575;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:72:630,72,0
chrX	558676	.	T	C	920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=5.441;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.299;QD=16.43;ReadPosRankSum=1.670;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:953,105,0
chrX	558889	.	T	C	909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.249;QD=21.14;ReadPosRankSum=1.652;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:942,105,0
chrX	559033	.	T	C	383	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=18.24;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:48:416,48,0
chrX	559184	.	T	A	885	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:918,96,0
chrX	559553	.	C	T	870	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.77;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:96:903,96,0
chrX	559588	.	A	G	978	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.363;QD=22.23;ReadPosRankSum=1.652;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,42:44:99:1011,111,0
chrX	559763	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=80;Dels=0.00;FS=3.294;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=-0.943;QD=19.59;ReadPosRankSum=1.688;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1600,180,0
chrX	559813	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.53;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1700,183,0
chrX	559883	.	T	C	1234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.0693;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.062;QD=19.90;ReadPosRankSum=1.676;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1267,138,0
chrX	560037	.	T	C	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.2886;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.506;QD=22.09;ReadPosRankSum=1.626;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1469,159,0
chrX	560201	.	A	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.08;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1539,168,0
chrX	560210	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.06;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1333,150,0
chrX	560285	.	G	A	801	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.813;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-1.237;QD=16.35;ReadPosRankSum=-1.096;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:70:834,70,0
chrX	560603	.	T	G	1138	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.247;QD=23.22;ReadPosRankSum=1.662;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1171,126,0
chrX	561055	.	A	G	2115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.7941;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.577;QD=20.94;ReadPosRankSum=1.697;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:1,99:101:99:2148,237,0
chrX	561590	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.49;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1560,168,0
chrX	562463	.	T	C	1658	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.82;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1691,186,0
chrX	562628	.	T	C	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=3.701;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.968;QD=21.26;ReadPosRankSum=1.630;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1479,162,0
chrX	562685	.	A	G	958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-0.774;QD=19.96;ReadPosRankSum=1.659;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:99:991,111,0
chrX	562764	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.710;QD=20.79;ReadPosRankSum=1.505;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1301,141,0
chrX	562775	.	G	A	1347	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.72;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1380,147,0
chrX	562979	.	T	G	1857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.6869;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.265;QD=23.51;ReadPosRankSum=1.763;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1890,207,0
chrX	563075	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.371;QD=22.60;ReadPosRankSum=1.609;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1321,150,0
chrX	563141	.	T	C	1497	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.39;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1530,171,0
chrX	563498	.	T	C	1938	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.78;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1971,216,0
chrX	563508	.	T	C	1728	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=19.20;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1761,192,0
chrX	563528	.	G	A	2091	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.11;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2124,225,0
chrX	563993	.	G	A	2408	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.93;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2441,267,0
chrX	564092	.	T	C	1712	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=25.18;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1745,192,0
chrX	564269	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.24;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:70:99:1520,159,0
chrX	564290	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.223;QD=21.49;ReadPosRankSum=1.528;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1494,168,0
chrX	564333	.	T	G	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=80;Dels=0.00;FS=6.417;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-2.013;QD=20.61;ReadPosRankSum=2.388;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:2,77:80:99:1682,186,0
chrX	564368	.	A	C	1857	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.59;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1890,210,0
chrX	564566	.	G	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.51;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1609,171,0
chrX	564773	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.51;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1535,171,0
chrX	564818	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.01;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1421,153,0
chrX	565018	.	A	G	1613	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.91;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1646,180,0
chrX	565262	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.440;QD=21.80;ReadPosRankSum=1.615;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1319,147,0
chrX	565364	.	A	G	1117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;MQRankSum=1.132;QD=14.89;ReadPosRankSum=1.640;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1150,123,0
chrX	565373	.	T	C	1048	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.328;QD=14.16;ReadPosRankSum=1.685;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1081,120,0
chrX	565457	.	T	C	2277	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.77;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2310,252,0
chrX	565604	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.48;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1408,159,0
chrX	565667	.	A	C	1208	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=17.76;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1241,138,0
chrX	565712	.	G	A	1437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.267;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=-1.394;QD=16.91;ReadPosRankSum=-0.803;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,81:85:99:1470,144,0
chrX	565724	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.253;QD=18.38;ReadPosRankSum=-1.516;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:1,96:99:99:1853,175,0
chrX	566045	.	C	T	2127	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.06;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2160,237,0
chrX	566093	.	C	T	2947	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.02;SB=-1.512e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2980,315,0
chrX	566114	.	C	T	3029	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.12;SB=-1.789e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3062,324,0
chrX	566519	.	T	C	2269	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.25;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2302,261,0
chrX	566594	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.83;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1238,132,0
chrX	566600	.	G	C	985	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=16.15;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1018,114,0
chrX	566656	.	A	G	1150	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=17.69;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1183,129,0
chrX	567062	.	G	A	1350	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.35;MQ0=0;QD=21.77;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1383,144,0
chrX	567157	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.598;QD=21.48;ReadPosRankSum=2.359;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1773,174,0
chrX	567191	.	T	C	1771	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.00;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1804,198,0
chrX	567298	.	C	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.08;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1479,159,0
chrX	567375	.	C	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.48;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1323,138,0
chrX	567462	.	A	G	1440	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.15;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1473,159,0
chrX	567525	.	A	G	2027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;DP=96;Dels=0.00;FS=11.464;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.032;QD=21.11;ReadPosRankSum=2.926;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:3,92:96:99:2060,225,0
chrX	568363	.	G	A	1706	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.45;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1739,186,0
chrX	568539	.	A	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.77;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1622,180,0
chrX	568805	.	C	T	1789	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.45;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1822,192,0
chrX	568992	.	A	T	1991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.577;QD=21.41;ReadPosRankSum=1.583;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2024,213,0
chrX	569307	.	G	A	2292	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.2230;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.84;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2325,258,0
chrX	570422	.	T	C	1055	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=16.23;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1088,117,0
chrX	570512	.	G	A	1120	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.86;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1153,123,0
chrX	570648	.	C	G	992	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=16.26;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1025,114,0
chrX	570721	.	T	C	874	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.51;MQ0=0;QD=17.84;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:907,102,0
chrX	570822	.	A	G	646	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=17.00;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:679,78,0
chrX	571066	.	A	G	824	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.17;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:857,93,0
chrX	571276	.	T	C	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.683;QD=17.46;ReadPosRankSum=1.573;SB=-1.366e+03	GT:AD:DP:GQ:PL	1/1:1,108:110:99:1954,213,0
chrX	571299	.	T	C	1911	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=15.92;SB=-1.507e+03	GT:AD:DP:GQ:PL	1/1:0,118:120:99:1944,213,0
chrX	571314	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=3.617;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.859;QD=16.26;ReadPosRankSum=1.702;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:1903,207,0
chrX	571399	.	T	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.87;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1603,180,0
chrX	571651	.	G	A	1879	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0046;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.99;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1912,201,0
chrX	571854	.	T	C	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.866;QD=16.57;ReadPosRankSum=1.675;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1027,114,0
chrX	571909	.	G	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.55;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1692,177,0
chrX	572041	.	C	T	1007	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.89;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1040,111,0
chrX	572117	.	A	G	761	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=15.22;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:87:794,87,0
chrX	572675	.	A	G	2050	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.567;QD=18.81;ReadPosRankSum=1.700;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:1,106:109:99:2083,234,0
chrX	572786	.	G	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.11;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1717,189,0
chrX	572936	.	C	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.3295;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=16.89;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1114,120,0
chrX	573135	.	A	C	1857	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.93;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1890,210,0
chrX	574034	.	C	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2274;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.86;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1089,120,0
chrX	574073	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.48;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1719,180,0
chrX	574305	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.59;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1248,132,0
chrX	574529	.	G	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.41;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1625,168,0
chrX	574769	.	T	C	988	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.16;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1021,114,0
chrX	574799	.	T	C	1262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.395;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.556;QD=21.39;ReadPosRankSum=1.674;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1295,144,0
chrX	574857	.	A	C	1066	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.70;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1099,123,0
chrX	575093	.	T	C	649	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.54;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:75:682,75,0
chrX	575193	.	A	G	1364	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.19;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1397,159,0
chrX	576458	.	T	C	1812	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.07;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1845,204,0
chrX	576551	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.45;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1336,144,0
chrX	576835	.	C	A	537	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=30.5726;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=14.13;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:60:570,60,0
chrX	576879	.	A	C	487	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.39;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:57:520,57,0
chrX	576915	.	T	C	898	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:99:931,102,0
chrX	576959	.	A	G	1305	filter	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.19;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1338,147,0
chrX	576987	.	T	G	859	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=15.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,53:55:99:892,99,0
chrX	577019	.	A	C	540	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.00;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:63:573,63,0
chrX	577387	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.25;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1754,192,0
chrX	577393	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.73;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1710,189,0
chrX	577591	.	C	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.20;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1387,147,0
chrX	577732	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.0448;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.81;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:99:1379,147,0
chrX	578278	.	G	A	2168	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2201,231,0
chrX	578455	.	T	C	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.291;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.866;QD=17.32;ReadPosRankSum=1.624;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1159,126,0
chrX	579944	.	G	A	1851	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.51;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1884,198,0
chrX	580057	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.63;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1266,135,0
chrX	580104	.	T	C	708	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.7223;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=18.63;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:741,84,0
chrX	580110	.	T	C	613	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.51;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:75:646,75,0
chrX	580576	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.24;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1201,135,0
chrX	580583	.	T	G	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.937;QD=20.11;ReadPosRankSum=-0.483;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1260,121,0
chrX	580666	.	T	A	2241	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.5998;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.34;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2274,240,0
chrX	580738	.	A	G	1759	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=3.022;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.879;QD=21.45;ReadPosRankSum=2.390;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1792,198,0
chrX	580861	.	T	C	911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=3.263;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.163;QD=16.87;ReadPosRankSum=1.667;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:944,99,0
chrX	580864	.	C	T	815	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=14.82;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:848,96,0
chrX	580888	.	T	A	1000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.782;QD=16.13;ReadPosRankSum=1.062;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:95:1033,95,0
chrX	581521	.	T	A	566	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.17;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:63:599,63,0
chrX	582386	.	C	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8367;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1678,183,0
chrX	582558	.	G	A	2725	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.29;SB=-1.439e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2758,291,0
chrX	583337	.	C	G	1666	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.51;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1699,192,0
chrX	583869	.	G	A	1249	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.48;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1282,135,0
chrX	584019	.	T	C	1243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.173;QD=20.72;ReadPosRankSum=1.675;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1276,141,0
chrX	584125	.	G	A	1242	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.00;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1275,135,0
chrX	584131	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.60;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1145,129,0
chrX	584707	.	T	C	1025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=95;Dels=0.00;FS=10.413;HaplotypeScore=2.6511;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;MQRankSum=0.169;QD=10.79;ReadPosRankSum=1.802;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1058,120,0
chrX	584710	.	C	T	1045	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=10.89;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1078,117,0
chrX	584812	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.613;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=1.039;QD=15.91;ReadPosRankSum=1.519;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:98:1083,98,0
chrX	584830	.	T	C	887	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=15.56;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:920,102,0
chrX	586561	.	C	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.61;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1373,147,0
chrX	586827	.	A	G	1368	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=65;Dels=0.00;FS=2.990;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.901;QD=21.05;ReadPosRankSum=2.372;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:2,61:65:99:1401,156,0
chrX	587243	.	G	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.56;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1725,186,0
chrX	587401	.	T	C	2294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=113;Dels=0.00;FS=6.710;HaplotypeScore=9.3628;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.165;QD=20.30;ReadPosRankSum=2.362;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:2,110:113:99:2327,252,0
chrX	587592	.	A	G	1953	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.93;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1986,216,0
chrX	587671	.	G	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.04;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1696,177,0
chrX	587843	.	T	C	1580	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.52;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1613,177,0
chrX	588214	.	C	T	1995	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7880;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.93;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2028,216,0
chrX	588782	.	T	C	2353	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.77;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2386,261,0
chrX	588829	.	T	C	2531	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.34;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2564,279,0
chrX	588893	.	G	A	1950	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.20;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1983,207,0
chrX	589176	.	G	A	2414	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.55;SB=-1.399e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2447,270,0
chrX	589204	.	G	A	2138	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.99;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2171,228,0
chrX	591685	.	T	G	1829	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.3727;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.05;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1862,210,0
chrX	591944	.	A	G	2112	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.96;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2145,234,0
chrX	592549	.	A	T	2646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=123;Dels=0.00;FS=2.572;HaplotypeScore=11.4245;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.746;QD=21.51;ReadPosRankSum=2.927;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:3,120:123:99:2679,276,0
chrX	593074	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.77;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1816,195,0
chrX	593411	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.28;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1392,147,0
chrX	593947	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.832;QD=22.60;ReadPosRankSum=-1.102;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1773,198,0
chrX	595014	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.76;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1717,183,0
chrX	595101	.	T	G	1679	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.09;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1712,192,0
chrX	595640	.	G	C	1406	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.00;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1439,162,0
chrX	595994	.	T	C	2030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.491;DP=100;Dels=0.00;FS=7.918;HaplotypeScore=11.1348;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.807;QD=20.30;ReadPosRankSum=2.613;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:5,94:100:99:2063,225,0
chrX	597545	.	A	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.97;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1304,144,0
chrX	597723	.	G	A	1805	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.75;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1838,195,0
chrX	598202	.	T	C	1688	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.51;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1721,189,0
chrX	598472	.	A	C	1141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.115;QD=19.02;ReadPosRankSum=1.617;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1174,129,0
chrX	599340	.	C	T	2730	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.20;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2763,291,0
chrX	599394	.	T	C	2075	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.61;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2108,234,0
chrX	599916	.	A	C	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.347;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.491;QD=19.61;ReadPosRankSum=0.026;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1347,147,0
chrX	600173	.	T	C	1659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.732;QD=20.48;ReadPosRankSum=1.689;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1692,183,0
chrX	600241	.	C	T	1392	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1425,153,0
chrX	600288	.	A	T	1467	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.92;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1500,162,0
chrX	600396	.	A	C	1647	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3038;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.26;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1680,186,0
chrX	600487	.	C	T	2202	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.77;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,102:106:99:2235,243,0
chrX	600589	.	T	C	1756	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=19.51;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1789,195,0
chrX	600714	.	T	G	1922	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.12;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1955,216,0
chrX	600970	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.22;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1589,180,0
chrX	601429	.	G	A	1459	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.78;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1492,156,0
chrX	602469	.	C	T	1117	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.69;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1150,126,0
chrX	605806	.	T	C	2233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=106;Dels=0.00;FS=3.054;HaplotypeScore=9.0309;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.750;QD=21.07;ReadPosRankSum=2.401;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:2,100:106:99:2266,246,0
chrX	606584	.	G	A	1564	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.31;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1597,177,0
chrX	606777	.	C	G	659	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=102.1753;MLEAC=2;MLEAF=1.00;MQ=36.00;MQ0=0;QD=9.98;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:78:692,78,0
chrX	606787	.	T	A	251	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=5.02;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:36:284,36,0
chrX	606788	.	C	A	179.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=3.58;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:27:212,27,0
chrX	606789	.	C	A	180.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.75;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:27:213,27,0
chrX	606791	.	C	T	107.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.23;SB=-6.671e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:18:140,18,0
chrX	606792	.	T	C	106.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=-1.663;QD=2.12;ReadPosRankSum=1.594;SB=-6.211e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:18:139,18,0
chrX	607107	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=15.29;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1195,126,0
chrX	607623	.	T	C	1155	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.11;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1188,129,0
chrX	607960	.	C	T	1557	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.33;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1590,171,0
chrX	609366	.	A	G	1665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.784;QD=19.82;ReadPosRankSum=1.691;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1698,183,0
chrX	609455	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1826,192,0
chrX	609591	.	C	T	2398	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.62;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2431,258,0
chrX	609623	.	G	T	2261	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.6683;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.84;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2294,243,0
chrX	609704	.	C	T	3127	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.16;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:3160,336,0
chrX	610420	.	A	G	1918	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5874;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=22.05;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1951,216,0
chrX	610450	.	T	G	1849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=4.5884;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;MQRankSum=0.021;QD=22.28;ReadPosRankSum=1.690;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1882,213,0
chrX	610558	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=13.9534;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.433;QD=21.61;ReadPosRankSum=1.689;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,80:84:99:1848,204,0
chrX	610708	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.29;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,90:93:99:2013,213,0
chrX	610752	.	A	G	1837	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=17.83;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1870,207,0
chrX	610782	.	T	A	1466	SnpCluster	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.00;MQ0=0;QD=12.86;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1499,159,0
chrX	610787	.	A	G	1082	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;DP=111;Dels=0.00;FS=3.464;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.55;MQ0=0;MQRankSum=-1.607;QD=9.75;ReadPosRankSum=1.670;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:1115,126,0
chrX	610792	.	C	A	1074	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;QD=10.04;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1107,117,0
chrX	610803	.	A	T	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=106;Dels=0.00;FS=7.498;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=0;MQRankSum=0.313;QD=8.12;ReadPosRankSum=2.310;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:93:894,93,0
chrX	610814	.	C	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=10.32;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1168,129,0
chrX	610850	.	G	A	2446	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.4386;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=16.53;SB=-1.753e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:2479,267,0
chrX	610934	.	G	T	2215	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.37;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2248,243,0
chrX	611048	.	C	T	1937	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=45.32;MQ0=0;QD=20.18;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1970,216,0
chrX	611049	.	C	T	1957	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=20.18;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1990,222,0
chrX	611064	.	A	G	1925	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=17.19;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1958,219,0
chrX	611098	.	A	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=14.82;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1485,180,0
chrX	611194	.	C	T	1648	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9771;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.86;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1681,180,0
chrX	611302	.	T	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.51;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1539,165,0
chrX	611378	.	A	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.1079;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.63;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1374,150,0
chrX	611452	.	A	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.77;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1279,138,0
chrX	611484	.	G	A	1246	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.48;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1279,135,0
chrX	611557	.	T	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.74;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1133,123,0
chrX	611716	.	A	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=17.06;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1261,141,0
chrX	611743	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=12.12;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:954,108,0
chrX	611749	.	C	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=12.83;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1085,117,0
chrX	611816	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.03;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1620,171,0
chrX	611896	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.145;QD=22.92;ReadPosRankSum=1.674;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1385,150,0
chrX	611963	.	C	T	744	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=16.91;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:777,81,0
chrX	611965	.	G	A	716	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.95;MQ0=0;QD=16.65;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:749,81,0
chrX	611971	.	C	G	826	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=15.88;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:859,93,0
chrX	611998	.	T	C	740	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.6946;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=12.33;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:87:773,87,0
chrX	612007	.	T	C	715	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=11.92;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:84:748,84,0
chrX	612042	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-0.133;QD=14.65;ReadPosRankSum=1.643;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1176,132,0
chrX	612095	.	C	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=20.00;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1993,213,0
chrX	612103	.	A	G	1906	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=19.06;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1939,213,0
chrX	612134	.	G	A	2136	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.78;SB=-1.411e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2169,228,0
chrX	612210	.	A	C	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.577;QD=23.48;ReadPosRankSum=1.675;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1442,156,0
chrX	612457	.	T	C	1584	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.31;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1617,174,0
chrX	612558	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.92;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1351,141,0
chrX	612825	.	C	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.82;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1562,165,0
chrX	613234	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.75;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1482,156,0
chrX	613806	.	C	T	1570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.142;DP=89;Dels=0.00;FS=3.110;HaplotypeScore=8.6188;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=1.693;QD=17.64;ReadPosRankSum=0.827;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1603,153,0
chrX	614716	.	A	T	1544	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.579;QD=22.71;ReadPosRankSum=1.681;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1577,171,0
chrX	614787	.	A	G	1133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=56;Dels=0.00;FS=2.888;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-1.567;QD=20.23;ReadPosRankSum=2.362;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1166,126,0
chrX	615123	.	C	A	1016	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.17;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1049,117,0
chrX	615182	.	C	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.12;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1123,117,0
chrX	615201	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.88;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1186,132,0
chrX	615250	.	C	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.74;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1158,123,0
chrX	615265	.	A	G	907	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=18.90;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:940,102,0
chrX	615340	.	A	C	545	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.03;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:63:578,63,0
chrX	615560	.	A	C	1745	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.96;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1778,195,0
chrX	615792	.	A	G	1350	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-1.173;QD=21.43;ReadPosRankSum=1.676;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1383,153,0
chrX	616088	.	G	T	1209	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.82;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1242,132,0
chrX	616115	.	G	A	809	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.26;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:842,93,0
chrX	616465	.	C	T	1163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=56;Dels=0.00;FS=4.616;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.976;QD=20.77;ReadPosRankSum=0.724;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1196,132,0
chrX	616507	.	A	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.08;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1464,153,0
chrX	616641	.	C	T	2158	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.37;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2191,237,0
chrX	616666	.	C	T	1996	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.46;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2029,213,0
chrX	616822	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=17.94;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1414,150,0
chrX	617344	.	A	G	2211	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9722;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.89;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2244,249,0
chrX	617873	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.0524;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.69;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1295,141,0
chrX	618157	.	A	G	1691	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.6843;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.37;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1724,192,0
chrX	618202	.	T	A	1774	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.65;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1807,189,0
chrX	618528	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=72;Dels=0.00;FS=7.279;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=0.156;QD=20.39;ReadPosRankSum=2.381;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1501,162,0
chrX	618531	.	G	A	1425	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.52;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1458,159,0
chrX	619896	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.84;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1617,171,0
chrX	619975	.	C	T	2159	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.97;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2192,240,0
chrX	620054	.	T	C	1088	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=20.15;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1121,123,0
chrX	620064	.	T	C	1020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;MQRankSum=-0.173;QD=17.00;ReadPosRankSum=1.675;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1053,117,0
chrX	620157	.	A	G	1046	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.48;MQ0=0;QD=15.16;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1079,120,0
chrX	620255	.	T	A	1048	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.707;HaplotypeScore=4.4318;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=-0.192;QD=19.41;ReadPosRankSum=1.668;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1081,114,0
chrX	620256	.	G	A	1046	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.4318;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=19.02;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1079,114,0
chrX	620362	.	T	C	585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;MQRankSum=-0.460;QD=11.94;ReadPosRankSum=1.662;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:72:618,72,0
chrX	620371	.	T	C	688	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8406;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=13.23;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:721,81,0
chrX	620563	.	G	A	661	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.36;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:694,72,0
chrX	620736	.	T	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.135;DP=93;Dels=0.00;FS=4.637;HaplotypeScore=82.0141;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.181;QD=0.23;ReadPosRankSum=-3.698;SB=-6.776e+01	GT:AD:DP:GQ:PL	1/1:87,6:93:6:53,6,0
chrX	620966	.	C	G	1423	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.49;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1456,159,0
chrX	621005	.	G	A	1503	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=17.08;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1536,162,0
chrX	622163	.	A	G	2455	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.92;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2488,279,0
chrX	622192	.	G	A	2448	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=24.24;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2481,258,0
chrX	622386	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=19.66;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1409,150,0
chrX	622643	.	T	C	1892	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.79;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1925,210,0
chrX	622799	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.179;QD=15.88;ReadPosRankSum=1.673;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:954,105,0
chrX	622874	.	G	A	1528	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.9277;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.10;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1561,168,0
chrX	623027	.	A	T	1609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=89;Dels=0.00;FS=2.614;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.301;QD=18.08;ReadPosRankSum=2.278;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1642,174,0
chrX	623040	.	T	C	1412	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.83;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1445,156,0
chrX	623095	.	G	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.73;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1194,126,0
chrX	623184	.	C	G	812	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.65;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:845,96,0
chrX	623186	.	C	T	837	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=17.81;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:870,96,0
chrX	623311	.	C	T	743	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.05;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:776,81,0
chrX	623546	.	A	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.80;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1437,153,0
chrX	623827	.	G	A	1227	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.2674;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.31;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1260,135,0
chrX	623961	.	C	T	1132	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.96;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1165,123,0
chrX	624069	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.26;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1054,117,0
chrX	624405	.	T	C	657	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=16.02;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:690,75,0
chrX	624474	.	C	T	822	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=16.78;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:855,90,0
chrX	624591	.	T	G	2159	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.63;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2192,252,0
chrX	624670	.	A	G	2052	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=92;Dels=0.00;FS=11.099;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.031;QD=22.30;ReadPosRankSum=2.396;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2085,228,0
chrX	624789	.	T	G	628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=-0.866;QD=14.27;ReadPosRankSum=1.654;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:72:661,72,0
chrX	624801	.	A	G	731	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=15.55;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:764,87,0
chrX	625578	.	T	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.44;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1180,123,0
chrX	626304	.	T	C	1404	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=19.50;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1437,162,0
chrX	626305	.	A	G	1412	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=19.34;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1445,162,0
chrX	626313	.	G	A	1338	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.85;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1371,144,0
chrX	628048	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.05;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1759,183,0
chrX	628623	.	T	C	992	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=4.065;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.510;QD=19.45;ReadPosRankSum=1.664;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1025,111,0
chrX	628891	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1625,174,0
chrX	629495	.	G	A	2017	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.92;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2050,213,0
chrX	629879	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.15;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1539,168,0
chrX	630494	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.95;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1332,141,0
chrX	633240	.	A	C	1731	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.61;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1764,192,0
chrX	633350	.	T	C	2291	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.14;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2324,246,0
chrX	633390	.	C	T	3330.01	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.13;SB=-1.591e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3330,351,0
chrX	633743	.	T	C	1657	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4264;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.83;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1690,186,0
chrX	634085	.	T	C	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=2.845;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.738;QD=20.37;ReadPosRankSum=2.286;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1866,210,0
chrX	634423	.	G	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.6988;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.97;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1857,195,0
chrX	634484	.	G	C	1807	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.47;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1840,198,0
chrX	634657	.	G	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1363,150,0
chrX	634739	.	T	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.72;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1287,144,0
chrX	635444	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.70;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1367,144,0
chrX	635927	.	T	A	423	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.23;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:48:456,48,0
chrX	636083	.	T	A	985	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=24.02;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1018,108,0
chrX	636335	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.09;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1102,117,0
chrX	636347	.	C	T	1137	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.60;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1170,129,0
chrX	636485	.	T	C	1513	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.64;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1546,168,0
chrX	636542	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.55;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1140,129,0
chrX	636720	.	G	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.59;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1557,165,0
chrX	637056	.	T	C	777	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.27;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:810,90,0
chrX	637464	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.30;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1162,123,0
chrX	637557	.	C	T	1493	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.66;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1526,162,0
chrX	637574	.	C	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=18.45;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1546,165,0
chrX	637657	.	G	A	2971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.159;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=10.5201;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.678;QD=23.03;ReadPosRankSum=1.705;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:1,127:129:99:3004,318,0
chrX	637737	.	G	A	2803	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.59;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2836,300,0
chrX	637795	.	A	G	3157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=133;Dels=0.00;FS=6.053;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.524;QD=23.74;ReadPosRankSum=1.680;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,132:133:99:3190,363,0
chrX	637972	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=87;Dels=0.00;FS=11.349;HaplotypeScore=10.5772;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.314;QD=20.20;ReadPosRankSum=2.873;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:3,84:87:99:1790,195,0
chrX	638472	.	T	C	1076	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.30;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1109,123,0
chrX	638730	.	T	C	979	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.20;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1012,114,0
chrX	638901	.	A	G	863	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=14.88;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:896,99,0
chrX	639041	.	T	C	1664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.091;QD=21.89;ReadPosRankSum=1.687;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1697,189,0
chrX	639113	.	T	G	1047	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.04;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1080,120,0
chrX	639136	.	G	T	994	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.09;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1027,108,0
chrX	639270	.	T	C	756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=4.150;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;MQRankSum=1.532;QD=14.54;ReadPosRankSum=1.666;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:90:789,90,0
chrX	639288	.	C	T	962	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;QD=18.86;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:995,105,0
chrX	639321	.	A	G	455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.223;DP=40;Dels=0.00;FS=2.517;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.14;MQ0=0;MQRankSum=-0.609;QD=11.37;ReadPosRankSum=3.223;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:4,36:40:54:488,54,0
chrX	639332	.	A	G	480	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=14.12;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:57:513,57,0
chrX	639333	.	T	G	495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;MQRankSum=1.634;QD=14.14;ReadPosRankSum=-0.149;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:60:528,60,0
chrX	639365	.	A	C	833	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=16.02;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:96:866,96,0
chrX	639519	.	G	C	603	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.10;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:72:636,72,0
chrX	639561	.	A	G	342	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=9.50;SB=-1.240e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:45:375,45,0
chrX	639618	.	A	G	739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=-0.255;QD=10.71;ReadPosRankSum=1.630;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:87:772,87,0
chrX	639731	.	T	C	101.26	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.14;MQ0=0;QD=6.75;SB=-1.193e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:15:134,15,0
chrX	639986	.	G	C	286	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;QD=8.41;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:36:319,36,0
chrX	640049	.	T	C	449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=43.66;MQ0=0;MQRankSum=-0.456;QD=7.88;ReadPosRankSum=1.246;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:54:482,54,0
chrX	640236	.	A	G	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=7.553;HaplotypeScore=5.0038;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.311;QD=24.35;ReadPosRankSum=1.685;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1835,201,0
chrX	640392	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4685;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=22.76;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1968,210,0
chrX	640468	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.06;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2013,216,0
chrX	640502	.	G	C	1651	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.93;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1684,180,0
chrX	640718	.	A	G	2911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.853;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.7538;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.029;QD=21.09;ReadPosRankSum=1.707;SB=-1.646e+03	GT:AD:DP:GQ:PL	1/1:1,137:138:99:2944,301,0
chrX	640980	.	G	A	2153	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5415;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.32;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2186,234,0
chrX	641019	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.99;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1902,204,0
chrX	641050	.	A	G	1946	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.3110;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.89;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1979,225,0
chrX	641346	.	T	C	2611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=142;Dels=0.00;FS=3.033;HaplotypeScore=21.4875;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.147;QD=18.39;ReadPosRankSum=2.363;SB=-1.742e+03	GT:AD:DP:GQ:PL	1/1:2,140:142:99:2644,291,0
chrX	641571	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6128;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.69;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1491,162,0
chrX	641631	.	T	C	948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=3.372;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;MQRankSum=0.693;QD=18.96;ReadPosRankSum=1.594;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:981,108,0
chrX	641753	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=15.23;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2013,219,0
chrX	641754	.	T	C	1965	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.531;DP=131;Dels=0.00;FS=15.689;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=-0.654;QD=15.00;ReadPosRankSum=2.608;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:3,128:131:99:1998,219,0
chrX	641813	.	T	G	1350	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=15.17;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1383,153,0
chrX	641931	.	T	C	813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=4.288;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;MQRankSum=0.849;QD=15.94;ReadPosRankSum=-1.189;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:93:846,93,0
chrX	642317	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=20.53;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1162,129,0
chrX	642324	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=20.14;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1221,138,0
chrX	642340	.	T	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9662;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=16.49;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1171,129,0
chrX	642375	.	C	T	847	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=14.12;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:93:880,93,0
chrX	642510	.	T	C	932	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.18;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:965,105,0
chrX	643441	.	G	C	3350.01	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.30;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,165:165:99:3350,378,0
chrX	643548	.	C	T	2543	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.92;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2576,276,0
chrX	643787	.	A	G	1788	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1821,198,0
chrX	643859	.	A	G	2098	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=93;Dels=0.00;FS=7.174;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.675;QD=22.56;ReadPosRankSum=2.291;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2131,240,0
chrX	643946	.	C	A	2333	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1659;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.81;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2366,249,0
chrX	644548	.	T	G	3534.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=171;Dels=0.00;FS=3.522;HaplotypeScore=12.0149;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.631;QD=20.67;ReadPosRankSum=1.651;SB=-1.936e+03	GT:AD:DP:GQ:PL	1/1:1,170:171:99:3534,378,0
chrX	644706	.	A	T	2408	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.94;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2441,264,0
chrX	644952	.	A	C	2369	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=0.532;QD=23.23;ReadPosRankSum=1.698;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2402,264,0
chrX	645000	.	A	G	1898	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=20.63;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1931,213,0
chrX	645026	.	G	A	2054	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.96;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2087,222,0
chrX	645027	.	A	G	1942	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.82;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1975,219,0
chrX	645078	.	G	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.7499;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.06;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1939,207,0
chrX	645177	.	A	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.20;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1877,207,0
chrX	645361	.	A	T	2158	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.98;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2191,231,0
chrX	645479	.	G	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.21;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1611,177,0
chrX	645498	.	G	A	1706	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.05;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1739,183,0
chrX	645565	.	C	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.06;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1907,201,0
chrX	645617	.	T	C	2263	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.6511;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.82;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2296,261,0
chrX	645711	.	G	A	2026	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.2012;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.76;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2059,213,0
chrX	645972	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.76;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1791,189,0
chrX	646018	.	A	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.76;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1467,159,0
chrX	646100	.	C	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.7476;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.47;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1492,156,0
chrX	646155	.	C	T	2183	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1974;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.59;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2216,237,0
chrX	646268	.	G	A	1596	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.86;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1629,171,0
chrX	646356	.	G	A	1134	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.24;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1167,126,0
chrX	646377	.	G	A	964	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.42;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:997,108,0
chrX	646464	.	T	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.71;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1669,183,0
chrX	646496	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.94;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1235,138,0
chrX	646557	.	T	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=71.2922;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=21.27;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1692,174,0
chrX	646595	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=77.3207;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=17.37;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1440,165,0
chrX	646775	.	T	A	1004	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.59;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1037,111,0
chrX	646873	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.75;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1444,150,0
chrX	647136	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=53;Dels=0.00;FS=5.614;HaplotypeScore=5.7528;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.325;QD=21.85;ReadPosRankSum=1.664;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:1,50:53:99:1191,129,0
chrX	647196	.	C	T	843	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:876,96,0
chrX	647651	.	T	C	964	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.962;QD=21.42;ReadPosRankSum=1.578;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:997,111,0
chrX	647702	.	T	C	970	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.64;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1003,111,0
chrX	648002	.	C	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.92;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1195,126,0
chrX	648026	.	T	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.72;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1615,168,0
chrX	648251	.	C	A	1089	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.45;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1122,120,0
chrX	648431	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=74;Dels=0.00;FS=9.544;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=1.317;QD=17.47;ReadPosRankSum=2.383;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1326,144,0
chrX	648461	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.76;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1614,177,0
chrX	648638	.	T	C	864	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.09;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:897,102,0
chrX	648980	.	T	C	1522	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.331;QD=21.44;ReadPosRankSum=1.632;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1555,171,0
chrX	649204	.	A	T	1430	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=19.86;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1463,156,0
chrX	649217	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=12.5305;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-1.108;QD=14.98;ReadPosRankSum=2.231;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:2,77:81:99:1246,141,0
chrX	649459	.	G	T	2051	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.82;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2084,225,0
chrX	649474	.	T	C	1788	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=18.43;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1821,201,0
chrX	649481	.	A	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=17.73;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1611,174,0
chrX	649486	.	T	C	1500	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=16.48;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1533,168,0
chrX	649585	.	G	A	1665	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.36;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1698,180,0
chrX	649659	.	T	C	1646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.493;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-0.936;QD=18.92;ReadPosRankSum=-1.453;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1679,160,0
chrX	649660	.	T	C	1714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=3.955;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.538;QD=19.48;ReadPosRankSum=1.653;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1747,189,0
chrX	649976	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.05;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1654,180,0
chrX	650265	.	T	C	799	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;MQRankSum=0.108;QD=11.93;ReadPosRankSum=1.678;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:93:832,93,0
chrX	650270	.	T	C	782	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.65;MQ0=0;QD=11.50;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:90:815,90,0
chrX	650283	.	C	T	689	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=10.28;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:78:722,78,0
chrX	650297	.	C	T	789	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=11.60;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:87:822,87,0
chrX	650299	.	G	A	854	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=12.38;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:96:887,96,0
chrX	650350	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3617;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.31;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1193,129,0
chrX	650462	.	G	A	1919	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.6209;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.31;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1952,216,0
chrX	650585	.	A	G	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.150;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=0.844;QD=22.56;ReadPosRankSum=1.688;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1793,201,0
chrX	650625	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=21.70;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1270,132,0
chrX	650654	.	C	G	854	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=18.57;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:887,99,0
chrX	650707	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=71;Dels=0.00;FS=2.925;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=1.442;QD=20.37;ReadPosRankSum=2.381;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1479,162,0
chrX	650894	.	A	G	2095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.822;QD=21.16;ReadPosRankSum=1.592;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2128,234,0
chrX	650906	.	G	A	1653	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.45;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1686,189,0
chrX	651009	.	A	C	1651	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.8558;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.72;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1684,189,0
chrX	651084	.	T	C	1109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.388;QD=16.55;ReadPosRankSum=1.681;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1142,126,0
chrX	651089	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=15.01;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1069,120,0
chrX	651146	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=16.50;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1320,141,0
chrX	651274	.	C	T	2003	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.02;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2036,222,0
chrX	651374	.	G	T	2512	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.23;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2545,264,0
chrX	652362	.	T	C	1368	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.00;FS=3.070;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.264;QD=19.27;ReadPosRankSum=2.380;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1401,156,0
chrX	652783	.	C	T	3011	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.1269;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.09;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3044,327,0
chrX	652837	.	G	A	2061	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.54;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2094,222,0
chrX	653144	.	A	G	2299	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.09;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2332,258,0
chrX	653249	.	T	C	1719	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.66;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1752,189,0
chrX	653480	.	C	T	1237	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.62;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1270,138,0
chrX	653585	.	A	G	1288	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.2855;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.89;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1321,144,0
chrX	653755	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.69;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1553,171,0
chrX	654221	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.12;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1448,159,0
chrX	654313	.	T	A	1184	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=18.79;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1217,129,0
chrX	654472	.	A	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1622,183,0
chrX	654612	.	A	T	2702	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=19.72;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,136:137:99:2735,294,0
chrX	654625	.	C	T	2878	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=17.99;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,160:160:99:2911,315,0
chrX	654726	.	A	G	3460.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=4.460;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.592;QD=23.38;ReadPosRankSum=1.685;SB=-1.407e+03	GT:AD:DP:GQ:PL	1/1:1,147:148:99:3460,393,0
chrX	655074	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.77;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1647,180,0
chrX	655282	.	T	C	1954	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0789;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=24.42;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1987,222,0
chrX	655382	.	G	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.90;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1084,123,0
chrX	655475	.	C	T	915	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:948,102,0
chrX	655589	.	A	G	2296	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.51;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2329,258,0
chrX	655670	.	G	A	2046	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.09;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2079,231,0
chrX	655865	.	C	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.17;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1606,174,0
chrX	655986	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.364;QD=19.21;ReadPosRankSum=2.303;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1647,183,0
chrX	656454	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.58;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1241,135,0
chrX	656567	.	C	T	1706	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.7885;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.31;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1739,180,0
chrX	657034	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.00;FS=3.641;HaplotypeScore=4.0613;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.843;QD=20.24;ReadPosRankSum=1.685;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1551,174,0
chrX	657067	.	C	G	1716	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.1194;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.65;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1749,195,0
chrX	657109	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.48;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1494,156,0
chrX	657265	.	A	C	583	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=13.56;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:69:616,69,0
chrX	657406	.	C	T	1260	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.72;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1293,138,0
chrX	657541	.	A	G	806	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.15;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:96:839,96,0
chrX	657858	.	A	G	1991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.232;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.3709;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.617;QD=21.64;ReadPosRankSum=1.655;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,89:92:99:2024,225,0
chrX	657928	.	A	G	1902	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.8898;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.38;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1935,210,0
chrX	658012	.	T	C	1247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;DP=63;Dels=0.00;FS=3.774;HaplotypeScore=10.6481;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.621;QD=19.79;ReadPosRankSum=0.950;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1280,135,0
chrX	658094	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.46;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1557,165,0
chrX	658665	.	T	C	1755	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.05;FS=0.000;HaplotypeScore=23.2593;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=14.62;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1788,195,0
chrX	660402	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.64;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1290,147,0
chrX	660487	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.23;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1186,129,0
chrX	660546	.	C	T	1896	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.55;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1929,204,0
chrX	660750	.	T	C	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.008;QD=21.57;ReadPosRankSum=1.577;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1500,165,0
chrX	660786	.	G	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.61;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1367,141,0
chrX	661047	.	C	T	1499	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.97;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1532,162,0
chrX	661050	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=0.393;QD=18.19;ReadPosRankSum=1.501;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,74:77:99:1434,159,0
chrX	661171	.	T	C	1455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.569;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.687;QD=23.10;ReadPosRankSum=1.677;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1488,162,0
chrX	661503	.	A	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.94;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1196,135,0
chrX	662226	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.408;QD=19.28;ReadPosRankSum=1.630;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1344,150,0
chrX	662262	.	T	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.16;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1200,132,0
chrX	663009	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=20.09;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1138,129,0
chrX	663013	.	A	C	903	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.06;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:936,108,0
chrX	663082	.	A	G	589	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=13.39;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:69:622,69,0
chrX	663083	.	A	G	611	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=13.28;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:72:644,72,0
chrX	663098	.	A	G	899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=5.873;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=0.597;QD=15.50;ReadPosRankSum=1.673;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:932,102,0
chrX	663261	.	T	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=15.39;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1126,126,0
chrX	663511	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=5.509;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-0.325;QD=20.60;ReadPosRankSum=1.678;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1372,156,0
chrX	663534	.	A	T	1349	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.41;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1382,147,0
chrX	663564	.	A	G	833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=50;Dels=0.00;FS=6.205;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=1.226;QD=16.66;ReadPosRankSum=2.860;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:3,47:50:96:866,96,0
chrX	663590	.	A	C	816	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.55;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:849,96,0
chrX	663968	.	T	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=13.44;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1283,147,0
chrX	664030	.	G	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3906;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.95;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1965,219,0
chrX	664236	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.45;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1229,129,0
chrX	664330	.	T	C	2185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;MQRankSum=0.675;QD=18.52;ReadPosRankSum=1.703;SB=-1.400e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2218,249,0
chrX	664516	.	T	C	1670	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.65;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1703,192,0
chrX	664824	.	A	G	2636	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8661;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.43;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2669,288,0
chrX	665002	.	G	A	1112	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=19.51;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1145,120,0
chrX	665027	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.164;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=0.924;QD=18.21;ReadPosRankSum=1.675;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1144,123,0
chrX	665057	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=18.77;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1610,171,0
chrX	665076	.	C	T	1988	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.29;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2021,210,0
chrX	665130	.	C	T	2260	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=10.3696;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.00;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2293,240,0
chrX	665597	.	C	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.2971;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.92;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1492,159,0
chrX	665788	.	G	A	1003	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.91;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1036,108,0
chrX	666622	.	A	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.74;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1401,156,0
chrX	666742	.	T	G	1139	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.09;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1172,126,0
chrX	667049	.	C	T	801	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=15.71;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:87:834,87,0
chrX	667152	.	C	G	1476	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.92;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1509,171,0
chrX	667337	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.61;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1146,126,0
chrX	667389	.	A	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.73;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1306,141,0
chrX	667452	.	C	T	1810	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.46;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1843,195,0
chrX	667717	.	A	G	2071	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=3.261;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.382;QD=23.01;ReadPosRankSum=1.693;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2104,237,0
chrX	667898	.	A	G	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9957;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.404;QD=14.35;ReadPosRankSum=1.675;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:894,99,0
chrX	667942	.	T	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=16.92;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1234,141,0
chrX	668091	.	G	C	2209	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.04;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2242,240,0
chrX	668102	.	A	G	2165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=4.607;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.200;QD=20.62;ReadPosRankSum=1.699;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2198,246,0
chrX	668331	.	C	T	593	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=7.4622;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=14.46;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:626,66,0
chrX	668393	.	A	G	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=2.669;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.299;QD=16.52;ReadPosRankSum=2.286;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1272,141,0
chrX	668723	.	A	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.59;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1392,156,0
chrX	668873	.	G	A	1610	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.5250;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.63;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1643,177,0
chrX	669077	.	G	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.5176;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.03;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1215,129,0
chrX	669427	.	G	A	2479	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.66;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,117:120:99:2512,279,0
chrX	669743	.	A	C	2620	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.3017;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.39;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2653,291,0
chrX	670398	.	T	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.75;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1186,129,0
chrX	670831	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.97;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1395,147,0
chrX	670934	.	T	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.2445;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.97;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1711,189,0
chrX	671070	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.79;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1301,135,0
chrX	671129	.	T	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.78;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1384,144,0
chrX	671183	.	C	G	1552	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.52;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1585,171,0
chrX	671428	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.59;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1826,192,0
chrX	671903	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1605,177,0
chrX	672455	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.46;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1362,150,0
chrX	672536	.	A	G	1263	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.70;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1296,144,0
chrX	672583	.	A	G	1084	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-0.517;QD=19.02;ReadPosRankSum=1.672;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1117,126,0
chrX	672602	.	T	C	1158	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.97;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1191,129,0
chrX	672728	.	G	A	1779	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.52;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1812,192,0
chrX	672815	.	A	G	744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=-1.466;QD=14.31;ReadPosRankSum=1.666;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:84:777,84,0
chrX	673377	.	G	A	3305.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DP=143;Dels=0.00;FS=4.416;HaplotypeScore=8.0123;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=1.634;QD=23.11;ReadPosRankSum=1.708;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:1,141:143:99:3305,328,0
chrX	673554	.	C	T	2732	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=21.02;SB=-1.707e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2765,291,0
chrX	673593	.	G	T	2698	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.55;SB=-1.869e+03	GT:AD:DP:GQ:PL	1/1:0,136:138:99:2731,285,0
chrX	673602	.	G	A	3006	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.15;SB=-1.979e+03	GT:AD:DP:GQ:PL	1/1:0,155:156:99:3039,324,0
chrX	673637	.	G	A	3401.01	PASS	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=5.1694;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.43;SB=-1.633e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:3401,369,0
chrX	673855	.	G	T	3411.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.7570;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.89;SB=-1.684e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3411,360,0
chrX	673954	.	A	G	3079	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=5.7835;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.709;QD=20.53;ReadPosRankSum=1.709;SB=-1.721e+03	GT:AD:DP:GQ:PL	1/1:1,147:150:99:3112,336,0
chrX	674143	.	G	C	1812	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.83;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1845,204,0
chrX	674570	.	G	A	1187	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1220,132,0
chrX	675076	.	T	C	3116	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=138;Dels=0.00;FS=3.027;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.151;QD=22.58;ReadPosRankSum=2.414;SB=-1.737e+03	GT:AD:DP:GQ:PL	1/1:2,136:138:99:3149,333,0
chrX	675286	.	T	A	2038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.343;HaplotypeScore=10.1331;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=-0.091;QD=21.23;ReadPosRankSum=1.295;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2071,225,0
chrX	675709	.	G	A	1882	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=17.27;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1915,210,0
chrX	675734	.	T	C	2275	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.28;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2308,252,0
chrX	676123	.	C	T	3878.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.185;QD=25.68;ReadPosRankSum=-0.092;SB=-1.939e+03	GT:AD:DP:GQ:PL	1/1:1,149:151:99:3878,403,0
chrX	676487	.	C	T	3418.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.7056;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.94;SB=-1.924e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3418,363,0
chrX	676590	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.66;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1961,207,0
chrX	676668	.	C	T	2002	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2035,216,0
chrX	676954	.	T	A	2984	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.26;SB=-1.385e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3017,315,0
chrX	677009	.	T	C	2133	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.69;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2166,240,0
chrX	677087	.	A	G	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=2.868;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.055;QD=19.10;ReadPosRankSum=2.235;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1351,147,0
chrX	677297	.	C	T	3200	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.13;SB=-1.740e+03	GT:AD:DP:GQ:PL	1/1:0,156:159:99:3233,351,0
chrX	677369	.	T	C	2164	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.01;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2197,240,0
chrX	677385	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=63.7895;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=22.60;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1547,171,0
chrX	677705	.	T	C	1038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-1.636;QD=14.22;ReadPosRankSum=1.684;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1071,117,0
chrX	677706	.	T	C	1114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-0.831;QD=15.26;ReadPosRankSum=1.685;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1147,123,0
chrX	677717	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=0.096;QD=14.39;ReadPosRankSum=1.684;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1069,123,0
chrX	677952	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.525;QD=19.30;ReadPosRankSum=1.681;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1326,147,0
chrX	678445	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8864;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=20.59;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1680,177,0
chrX	678464	.	T	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=21.31;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1461,159,0
chrX	678652	.	T	C	1582	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.280;QD=17.20;ReadPosRankSum=0.678;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1615,177,0
chrX	680328	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=14.1303;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.27;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1767,198,0
chrX	680733	.	C	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.25;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1477,159,0
chrX	680856	.	C	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1195,126,0
chrX	680931	.	A	G	1871	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.68;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1904,207,0
chrX	681144	.	C	G	1789	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1822,198,0
chrX	681414	.	T	C	2148	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.60;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:2181,237,0
chrX	681476	.	C	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.86;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1999,219,0
chrX	681606	.	T	C	1817	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.38;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1850,198,0
chrX	681843	.	G	A	1196	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.15;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1229,132,0
chrX	682242	.	G	A	1579	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.57;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1612,171,0
chrX	682344	.	T	A	1529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-1.039;QD=19.86;ReadPosRankSum=1.640;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1562,165,0
chrX	682740	.	T	C	1718	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.03;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1751,192,0
chrX	682784	.	A	T	940	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=9.6659;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.09;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:973,105,0
chrX	683353	.	G	A	2678	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9057;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.60;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2711,291,0
chrX	683733	.	T	G	2069	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.78;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2102,234,0
chrX	683975	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=19.44;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1491,165,0
chrX	684046	.	T	G	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=121;Dels=0.02;FS=3.237;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=1;MQRankSum=-0.323;QD=18.15;ReadPosRankSum=1.703;SB=-1.474e+03	GT:AD:DP:GQ:PL	1/1:1,117:119:99:2229,240,0
chrX	684047	.	G	A	2340	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=1;QD=19.34;SB=-1.577e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2373,252,0
chrX	684244	.	G	A	2120	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.55;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2153,225,0
chrX	684510	.	G	A	2370	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.43;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2403,264,0
chrX	684758	.	G	C	2261	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.39;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2294,249,0
chrX	685154	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.45;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1581,168,0
chrX	685208	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=23.14;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1375,144,0
chrX	685862	.	T	C	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=4.459;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.629;QD=21.42;ReadPosRankSum=1.681;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1468,165,0
chrX	685982	.	T	C	1912	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1945,210,0
chrX	686228	.	C	G	1115	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.04;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1148,129,0
chrX	686433	.	C	A	1072	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=16.00;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1105,126,0
chrX	686736	.	A	G	2882	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=12.3487;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.00;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,128:131:99:2915,318,0
chrX	686894	.	A	C	1362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.541;QD=20.95;ReadPosRankSum=1.678;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1395,153,0
chrX	688208	.	T	C	947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=3.5355;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-1.732;QD=19.73;ReadPosRankSum=1.588;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:980,111,0
chrX	688286	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.10;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1257,141,0
chrX	688646	.	A	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.34;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1406,150,0
chrX	688920	.	A	G	1296	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.94;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1329,147,0
chrX	691054	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.42;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1451,156,0
chrX	691080	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.79;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1278,138,0
chrX	697486	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.74;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1532,171,0
chrX	697654	.	G	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.95;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1230,132,0
chrX	699021	.	T	C	1870	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5940;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.74;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1903,213,0
chrX	699851	.	G	A	2033	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.18;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2066,219,0
chrX	701028	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.067;QD=13.30;ReadPosRankSum=1.687;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1057,120,0
chrX	701313	.	A	G	1628	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.61;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1661,183,0
chrX	701781	.	T	C	200.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;DP=134;Dels=0.00;FS=10.162;HaplotypeScore=21.5973;MLEAC=1;MLEAF=0.500;MQ=57.36;MQ0=0;MQRankSum=1.510;QD=1.49;ReadPosRankSum=-7.026;SB=-5.007e+00	GT:AD:DP:GQ:PL	0/1:94,39:134:99:230,0,1488
chrX	701784	.	G	A	148.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.547;DP=130;Dels=0.00;FS=12.922;HaplotypeScore=20.6850;MLEAC=1;MLEAF=0.500;MQ=57.28;MQ0=0;MQRankSum=-1.444;QD=1.14;ReadPosRankSum=-6.221;SB=-2.007e+00	GT:AD:DP:GQ:PL	0/1:97,33:130:99:178,0,1075
chrX	701827	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=11.0628;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=1;QD=20.38;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1684,177,0
chrX	701912	.	G	A	3520.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.217;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.258;QD=20.83;ReadPosRankSum=0.660;SB=-2.139e+03	GT:AD:DP:GQ:PL	1/1:1,167:169:99:3520,353,0
chrX	702597	.	C	A	2017	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=2;QD=18.34;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2050,219,0
chrX	703116	.	A	T	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.530;DP=60;Dels=0.00;FS=2.416;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=1.952;QD=18.32;ReadPosRankSum=3.664;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:5,55:60:99:1132,117,0
chrX	703339	.	A	G	485	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:60:518,60,0
chrX	703598	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.47;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1651,177,0
chrX	703814	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.90;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1406,150,0
chrX	703858	.	G	A	1705	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.86;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1738,183,0
chrX	703893	.	C	T	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.577;QD=21.05;ReadPosRankSum=-1.409;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1633,174,0
chrX	704310	.	C	T	820	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=15.77;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:853,90,0
chrX	704425	.	G	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.78;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1319,144,0
chrX	704426	.	C	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=19.51;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1301,138,0
chrX	704535	.	G	A	639	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=14.52;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:72:672,72,0
chrX	704795	.	A	T	812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.780;QD=20.30;ReadPosRankSum=0.953;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:90:845,90,0
chrX	704982	.	C	T	616	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=14.67;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:72:649,72,0
chrX	704998	.	C	T	670	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=14.89;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:703,75,0
chrX	705300	.	C	T	940	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.18;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:973,102,0
chrX	705421	.	T	C	860	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.48;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:893,99,0
chrX	705450	.	C	T	801	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.08;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:87:834,87,0
chrX	705542	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.93;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1209,135,0
chrX	705581	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.09;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:990,105,0
chrX	705586	.	C	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=18.21;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1089,114,0
chrX	705848	.	G	C	930	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.67;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:963,108,0
chrX	705865	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.67;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1008,108,0
chrX	705917	.	A	G	799	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.883;QD=14.80;ReadPosRankSum=1.602;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:96:832,96,0
chrX	705920	.	T	C	908	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=17.13;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:941,102,0
chrX	706135	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1488;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.31;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1556,174,0
chrX	706199	.	C	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.82;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1402,150,0
chrX	706295	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=22.84;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1289,144,0
chrX	707018	.	G	A	1968	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.50;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2001,216,0
chrX	707043	.	C	A	1872	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.02;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1905,201,0
chrX	707089	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.52;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1249,132,0
chrX	707206	.	C	T	2116	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2149,228,0
chrX	707260	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1557,162,0
chrX	708229	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.84;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1495,156,0
chrX	708450	.	C	T	618	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=15.85;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:651,69,0
chrX	708894	.	C	T	717	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.90;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:81:750,81,0
chrX	708931	.	A	G	779	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.26;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:93:812,93,0
chrX	709369	.	C	T	2673	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8151;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.24;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2706,288,0
chrX	710013	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.50;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,64:68:99:1495,168,0
chrX	710097	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5927;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.248;QD=18.55;ReadPosRankSum=1.620;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1777,198,0
chrX	710469	.	G	A	3091	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=211.5648;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.60;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3124,333,0
chrX	714434	.	G	A	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;DP=82;Dels=0.00;FS=5.880;HaplotypeScore=12.4728;MLEAC=1;MLEAF=0.500;MQ=10.50;MQ0=19;MQRankSum=3.482;QD=0.16;ReadPosRankSum=-2.134;SB=-6.656e-03	GT:AD:DP:GQ:PL	0/1:63,19:82:42:43,0,42
chrX	714763	.	T	G	201.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.659;DP=76;Dels=0.00;FS=157.489;HaplotypeScore=5.3539;MLEAC=1;MLEAF=0.500;MQ=37.90;MQ0=0;MQRankSum=-2.721;QD=2.64;ReadPosRankSum=-4.100;SB=-3.000e+00	GT:AD:DP:GQ:PL	0/1:50,26:76:99:231,0,955
chrX	714787	.	A	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=37.36;MQ0=0;QD=22.78;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1491,162,0
chrX	715050	.	G	A	244.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;DP=123;Dels=0.00;FS=3.053;HaplotypeScore=1.9800;MLEAC=1;MLEAF=0.500;MQ=42.91;MQ0=0;MQRankSum=-4.470;QD=1.98;ReadPosRankSum=-2.548;SB=-2.160e+02	GT:AD:DP:GQ:PL	0/1:89,34:123:99:274,0,1415
chrX	715054	.	G	T	233.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;DP=119;Dels=0.00;FS=4.549;HaplotypeScore=2.7687;MLEAC=1;MLEAF=0.500;MQ=42.44;MQ0=0;MQRankSum=-6.086;QD=1.96;ReadPosRankSum=-1.184;SB=-2.080e+02	GT:AD:DP:GQ:PL	0/1:87,32:119:99:263,0,1366
chrX	715068	.	G	A	659.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DP=124;Dels=0.00;FS=13.650;HaplotypeScore=3.1346;MLEAC=1;MLEAF=0.500;MQ=41.87;MQ0=0;MQRankSum=-5.753;QD=5.31;ReadPosRankSum=-0.598;SB=-5.510e+02	GT:AD:DP:GQ:PL	0/1:60,64:124:99:689,0,972
chrX	715072	.	G	T	665.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;DP=118;Dels=0.00;FS=16.130;HaplotypeScore=21.7046;MLEAC=1;MLEAF=0.500;MQ=40.70;MQ0=0;MQRankSum=-6.001;QD=5.64;ReadPosRankSum=1.393;SB=-5.120e+02	GT:AD:DP:GQ:PL	0/1:56,62:118:99:695,0,869
chrX	715081	.	T	G	420.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.358;DP=113;Dels=0.00;FS=5.521;HaplotypeScore=22.7657;MLEAC=1;MLEAF=0.500;MQ=39.32;MQ0=0;MQRankSum=-2.017;QD=3.72;ReadPosRankSum=1.647;SB=-2.770e+02	GT:AD:DP:GQ:PL	0/1:68,44:113:99:450,0,1026
chrX	715087	.	A	G	452.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DP=108;Dels=0.00;FS=5.572;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=37.21;MQ0=0;MQRankSum=-1.420;QD=4.19;ReadPosRankSum=1.482;SB=-3.270e+02	GT:AD:DP:GQ:PL	0/1:62,46:108:99:482,0,843
chrX	715095	.	G	A	751.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;DP=109;Dels=0.00;FS=5.617;HaplotypeScore=3.2460;MLEAC=1;MLEAF=0.500;MQ=35.68;MQ0=3;MQRankSum=0.308;QD=6.89;ReadPosRankSum=-2.694;SB=-2.830e+02	GT:AD:DP:GQ:PL	0/1:51,58:109:99:781,0,505
chrX	715099	.	G	T	679.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.053;DP=104;Dels=0.00;FS=5.625;HaplotypeScore=19.9005;MLEAC=1;MLEAF=0.500;MQ=34.34;MQ0=4;MQRankSum=0.390;QD=6.53;ReadPosRankSum=-2.880;SB=-2.420e+02	GT:AD:DP:GQ:PL	0/1:52,52:104:99:709,0,504
chrX	715108	.	A	T	222.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;DP=94;Dels=0.00;FS=4.076;HaplotypeScore=37.7706;MLEAC=1;MLEAF=0.500;MQ=32.56;MQ0=4;MQRankSum=-1.136;QD=2.36;ReadPosRankSum=-2.242;SB=-5.501e+01	GT:AD:DP:GQ:PL	0/1:55,22:94:99:252,0,574
chrX	715114	.	G	A	119.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DP=87;Dels=0.00;FS=2.499;HaplotypeScore=45.5862;MLEAC=1;MLEAF=0.500;MQ=32.34;MQ0=4;MQRankSum=0.796;QD=1.37;ReadPosRankSum=-1.563;SB=-3.101e+01	GT:AD:DP:GQ:PL	0/1:70,17:87:99:149,0,706
chrX	715126	.	A	G	157.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;DP=52;Dels=0.00;FS=3.030;HaplotypeScore=7.9451;MLEAC=1;MLEAF=0.500;MQ=32.90;MQ0=5;MQRankSum=-0.381;QD=3.02;ReadPosRankSum=-3.102;SB=-4.501e+01	GT:AD:DP:GQ:PL	0/1:36,16:52:99:187,0,325
chrX	715129	.	C	A	67.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=50;Dels=0.00;FS=1.426;HaplotypeScore=7.9451;MLEAC=1;MLEAF=0.500;MQ=32.76;MQ0=5;MQRankSum=-0.012;QD=1.34;ReadPosRankSum=-3.806;SB=-4.601e+01	GT:AD:DP:GQ:PL	0/1:34,16:50:97:97,0,297
chrX	715567	.	G	C	815	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=16.63;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,44:49:93:848,93,0
chrX	715574	.	C	T	893	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=19.00;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:926,102,0
chrX	716647	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.65;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1901,207,0
chrX	718111	.	G	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.85;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1939,204,0
chrX	718404	.	G	A	2305	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=24.26;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2338,243,0
chrX	718433	.	G	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=19.88;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1882,204,0
chrX	718439	.	A	G	1809	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.24;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1842,201,0
chrX	718475	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.04;FS=0.000;HaplotypeScore=19.6021;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.49;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1765,189,0
chrX	718527	.	C	T	1793	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.60;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1826,195,0
chrX	718630	.	G	A	1885	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=20.49;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1918,219,0
chrX	718939	.	G	A	2355	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.4373;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.79;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2388,255,0
chrX	719114	.	C	T	2081	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.8177;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.58;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2114,231,0
chrX	719200	.	C	T	2700	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.2118;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=24.55;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2733,291,0
chrX	719596	.	T	G	3450.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=10.7431;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.70;SB=-1.749e+03	GT:AD:DP:GQ:PL	1/1:0,158:159:99:3450,378,0
chrX	719842	.	G	A	1903	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=7.5600;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.82;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1936,204,0
chrX	719975	.	A	G	1762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=6.173;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.807;QD=20.25;ReadPosRankSum=2.337;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1795,198,0
chrX	720040	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.07;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1139,129,0
chrX	720331	.	T	C	1707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.042;QD=20.82;ReadPosRankSum=1.690;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1740,186,0
chrX	721302	.	G	A	3730.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.22;SB=-1.433e+03	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3730,396,0
chrX	721361	.	A	T	3461.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=146;Dels=0.00;FS=3.259;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.722;QD=23.71;ReadPosRankSum=1.708;SB=-1.630e+03	GT:AD:DP:GQ:PL	1/1:1,145:146:99:3461,372,0
chrX	722324	.	A	G	1428	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.1306;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.55;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1461,159,0
chrX	722672	.	A	G	1079	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.62;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1112,120,0
chrX	722676	.	A	C	1098	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.30;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1131,123,0
chrX	722780	.	G	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2688;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.96;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1849,198,0
chrX	725020	.	A	G	1360	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.30;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1393,150,0
chrX	725068	.	T	C	1047	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.39;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1080,120,0
chrX	726314	.	C	T	1864	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.18;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1897,201,0
chrX	727023	.	G	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.7704;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.54;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1245,138,0
chrX	727128	.	T	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.82;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1181,126,0
chrX	727369	.	T	C	1711	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.44;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1744,192,0
chrX	727432	.	A	G	1453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.968;DP=68;Dels=0.00;FS=4.346;HaplotypeScore=4.3565;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.579;QD=21.37;ReadPosRankSum=-1.274;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1486,139,0
chrX	727905	.	A	T	1610	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.17;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1643,174,0
chrX	727911	.	A	G	1325	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.324;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.483;QD=15.41;ReadPosRankSum=1.692;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1358,150,0
chrX	727914	.	C	T	1200	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.81;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1233,138,0
chrX	727915	.	T	C	1211	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.95;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1244,144,0
chrX	728001	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.06;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2111,237,0
chrX	728166	.	T	A	2386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.0239;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=0.700;QD=22.51;ReadPosRankSum=1.699;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2419,242,0
chrX	728402	.	T	C	2377	SnpCluster	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=17.74;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,131:134:99:2410,270,0
chrX	728403	.	T	A	2494	SnpCluster	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=19.04;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2527,273,0
chrX	728404	.	G	A	2517	SnpCluster	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=18.92;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,131:133:99:2550,273,0
chrX	728412	.	G	A	2523	SnpCluster	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=18.15;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2556,270,0
chrX	728604	.	A	G	930	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;DP=74;Dels=0.00;FS=3.742;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=26.53;MQ0=11;MQRankSum=0.372;QD=12.57;ReadPosRankSum=-0.020;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:9,65:74:99:963,108,0
chrX	728612	.	G	T	1086	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;DP=80;Dels=0.00;FS=6.154;HaplotypeScore=3.3631;MLEAC=2;MLEAF=1.00;MQ=25.99;MQ0=14;MQRankSum=1.680;QD=13.57;ReadPosRankSum=-1.155;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:11,69:80:99:1119,120,0
chrX	728616	.	G	A	1070	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.353;DP=79;Dels=0.00;FS=6.601;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=26.08;MQ0=15;MQRankSum=1.678;QD=13.54;ReadPosRankSum=-0.758;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:12,67:79:99:1103,120,0
chrX	728718	.	A	G	176.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.687;DP=161;Dels=0.00;FS=48.667;HaplotypeScore=9.8380;MLEAC=1;MLEAF=0.500;MQ=31.81;MQ0=22;MQRankSum=-0.678;QD=1.09;ReadPosRankSum=0.833;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:135,25:161:99:206,0,1881
chrX	729142	.	T	C	1113	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=134;Dels=0.00;FS=6.364;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=22.08;MQ0=42;MQRankSum=-0.555;QD=8.31;ReadPosRankSum=2.396;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:2,131:134:99:1146,129,0
chrX	729273	.	A	G	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;DP=223;Dels=0.00;FS=115.991;HaplotypeScore=14.2397;MLEAC=1;MLEAF=0.500;MQ=13.12;MQ0=107;MQRankSum=0.963;QD=0.12;ReadPosRankSum=-0.104;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:131,90:223:57:57,0,1033
chrX	729432	.	A	G	168.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=3.6616;MLEAC=1;MLEAF=0.500;MQ=8.96;MQ0=121;MQRankSum=2.940;QD=1.04;ReadPosRankSum=0.152;SB=-6.515e-03	GT:AD:DP:GQ:PL	0/1:112,46:161:72:198,0,72
chrX	729438	.	T	C	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.271;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=1.8835;MLEAC=1;MLEAF=0.500;MQ=8.63;MQ0=128;MQRankSum=-2.676;QD=0.26;ReadPosRankSum=0.779;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,102:167:73:73,0,185
chrX	729486	.	A	C	79.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=8.38;MQ0=117;MQRankSum=2.336;QD=0.51;ReadPosRankSum=1.222;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:118,35:154:81:109,0,81
chrX	729494	.	G	A	47.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=8.42;MQ0=116;MQRankSum=-1.846;QD=0.31;ReadPosRankSum=1.777;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,97:150:77:77,0,100
chrX	729592	.	G	T	319.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=12.64;MQ0=129;MQRankSum=6.344;QD=1.56;ReadPosRankSum=2.380;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:134,69:204:99:349,0,136
chrX	729658	.	G	A	403	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.818;DP=322;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=6.97;MQ0=259;MQRankSum=-2.805;QD=1.25;ReadPosRankSum=2.889;SB=0.326	GT:AD:DP:GQ:PL	1/1:125,195:321:57:436,57,0
chrX	730660	.	T	A	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.26;MQ0=33;QD=0.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:6:53,6,0
chrX	730773	.	A	T	41.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=9;MQRankSum=0.747;QD=2.47;ReadPosRankSum=0.747;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:1,16:17:9:74,9,0
chrX	730795	.	T	C	603	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=9;MQRankSum=-0.839;QD=15.07;ReadPosRankSum=1.621;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:72:636,72,0
chrX	730848	.	G	A	1595	filter	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=14;QD=17.72;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1628,183,0
chrX	731182	.	T	C	538	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.60;MQ0=22;QD=9.78;SB=-6.523e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:63:571,63,0
chrX	743794	.	C	A	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;DP=37;Dels=0.00;FS=8.735;HaplotypeScore=8.2933;MLEAC=1;MLEAF=0.500;MQ=20.14;MQ0=11;MQRankSum=1.676;QD=0.73;ReadPosRankSum=1.098;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,13:37:57:57,0,126
chrX	744134	.	T	G	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DP=50;Dels=0.00;FS=6.117;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=10.53;MQ0=33;MQRankSum=0.793;QD=0.54;ReadPosRankSum=2.379;SB=-7.003e+00	GT:AD:DP:GQ:PL	0/1:44,5:50:57:57,0,120
chrX	744173	.	A	G	27.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=13.2288;MLEAC=1;MLEAF=0.500;MQ=16.33;MQ0=10;MQRankSum=-2.806;QD=0.59;ReadPosRankSum=-0.686;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:20,20:46:57:57,0,213
chrX	744175	.	G	A	24.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=13.2288;MLEAC=1;MLEAF=0.500;MQ=16.40;MQ0=9;MQRankSum=-2.770;QD=0.52;ReadPosRankSum=-0.132;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:21,20:46:54:54,0,233
chrX	744182	.	A	T	93.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=55;Dels=0.00;FS=1.664;HaplotypeScore=13.7505;MLEAC=1;MLEAF=0.500;MQ=15.74;MQ0=10;MQRankSum=-3.067;QD=1.69;ReadPosRankSum=-1.301;SB=-5.622e+01	GT:AD:DP:GQ:PL	0/1:25,30:55:99:123,0,246
chrX	744922	.	G	T	163.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;DP=294;Dels=0.01;FS=52.713;HaplotypeScore=42.4544;MLEAC=1;MLEAF=0.500;MQ=14.34;MQ0=158;MQRankSum=5.460;QD=0.55;ReadPosRankSum=-2.463;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:266,24:292:99:193,0,705
chrX	744923	.	G	A	97.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DP=293;Dels=0.01;FS=16.712;HaplotypeScore=40.8771;MLEAC=1;MLEAF=0.500;MQ=14.33;MQ0=160;MQRankSum=3.835;QD=0.33;ReadPosRankSum=-3.329;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:267,24:291:99:127,0,758
chrX	744928	.	A	G	180.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;DP=302;Dels=0.00;FS=57.391;HaplotypeScore=29.2209;MLEAC=1;MLEAF=0.500;MQ=15.37;MQ0=164;MQRankSum=4.528;QD=0.60;ReadPosRankSum=-1.480;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:272,27:302:99:210,0,875
chrX	744960	.	A	G	946.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.689;DP=352;Dels=0.00;FS=61.470;HaplotypeScore=13.6263;MLEAC=1;MLEAF=0.500;MQ=18.33;MQ0=154;MQRankSum=-0.193;QD=2.69;ReadPosRankSum=1.732;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:219,131:352:99:976,0,1138
chrX	744983	.	G	A	432.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;DP=376;Dels=0.00;FS=19.683;HaplotypeScore=18.1701;MLEAC=1;MLEAF=0.500;MQ=19.00;MQ0=151;MQRankSum=4.507;QD=1.15;ReadPosRankSum=-0.140;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:299,76:376:99:462,0,2081
chrX	744984	.	G	A	511.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.172;DP=379;Dels=0.00;FS=14.385;HaplotypeScore=14.7416;MLEAC=1;MLEAF=0.500;MQ=18.92;MQ0=154;MQRankSum=4.058;QD=1.35;ReadPosRankSum=-0.012;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:288,87:379:99:541,0,2165
chrX	744994	.	A	G	473.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.445;DP=435;Dels=0.00;FS=12.681;HaplotypeScore=30.0435;MLEAC=1;MLEAF=0.500;MQ=18.44;MQ0=182;MQRankSum=5.783;QD=1.09;ReadPosRankSum=-0.860;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:346,89:435:99:503,0,1914
chrX	745013	.	T	C	116.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;DP=449;Dels=0.00;FS=24.738;HaplotypeScore=35.8950;MLEAC=1;MLEAF=0.500;MQ=17.71;MQ0=174;MQRankSum=5.881;QD=0.26;ReadPosRankSum=0.645;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:381,63:449:99:146,0,2618
chrX	745017	.	C	T	152.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.955;DP=439;Dels=0.00;FS=33.128;HaplotypeScore=23.8388;MLEAC=1;MLEAF=0.500;MQ=17.43;MQ0=172;MQRankSum=4.994;QD=0.35;ReadPosRankSum=0.304;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:358,80:439:99:182,0,2354
chrX	745020	.	T	C	74.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.672;DP=424;Dels=0.00;FS=19.897;HaplotypeScore=28.1351;MLEAC=1;MLEAF=0.500;MQ=17.01;MQ0=170;MQRankSum=5.052;QD=0.17;ReadPosRankSum=1.562;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:373,50:424:99:104,0,2380
chrX	745031	.	T	C	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;DP=361;Dels=0.00;FS=15.405;HaplotypeScore=30.1010;MLEAC=1;MLEAF=0.500;MQ=15.89;MQ0=158;MQRankSum=-1.812;QD=0.12;ReadPosRankSum=-0.049;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:317,40:361:73:73,0,1820
chrX	745032	.	A	G	285.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DP=358;Dels=0.00;FS=15.071;HaplotypeScore=30.1010;MLEAC=1;MLEAF=0.500;MQ=15.71;MQ0=158;MQRankSum=-0.441;QD=0.80;ReadPosRankSum=-0.196;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:299,58:358:99:315,0,1288
chrX	745053	.	G	T	182.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.382;DP=361;Dels=0.00;FS=36.065;HaplotypeScore=38.5696;MLEAC=1;MLEAF=0.500;MQ=15.05;MQ0=174;MQRankSum=7.226;QD=0.50;ReadPosRankSum=-2.666;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:313,47:361:99:212,0,1386
chrX	745121	.	G	C	244.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.033;DP=353;Dels=0.00;FS=1.259;HaplotypeScore=74.4344;MLEAC=1;MLEAF=0.500;MQ=24.40;MQ0=117;MQRankSum=-6.231;QD=0.69;ReadPosRankSum=2.125;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:231,121:353:99:274,0,2080
chrX	745270	.	A	G	677.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.678;DP=308;Dels=0.00;FS=84.662;HaplotypeScore=14.6267;MLEAC=1;MLEAF=0.500;MQ=25.34;MQ0=65;MQRankSum=-1.660;QD=2.20;ReadPosRankSum=-2.995;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:233,75:308:99:707,0,2688
chrX	745275	.	C	A	744.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.514;DP=310;Dels=0.00;FS=93.457;HaplotypeScore=15.4765;MLEAC=1;MLEAF=0.500;MQ=25.89;MQ0=56;MQRankSum=-0.697;QD=2.40;ReadPosRankSum=-2.439;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:234,74:309:99:774,0,2892
chrX	745310	.	G	T	218.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;DP=373;Dels=0.00;FS=82.962;HaplotypeScore=318.7018;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=37;MQRankSum=2.137;QD=0.58;ReadPosRankSum=-7.321;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:331,42:373:99:248,0,2606
chrX	745384	.	A	T	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;DP=271;Dels=0.00;FS=1.539;HaplotypeScore=20.8684;MLEAC=1;MLEAF=0.500;MQ=14.85;MQ0=122;MQRankSum=2.088;QD=0.13;ReadPosRankSum=-0.212;SB=-4.198e+01	GT:AD:DP:GQ:PL	0/1:245,26:271:65:65,0,807
chrX	745438	.	G	C	745.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.934;DP=160;Dels=0.00;FS=5.484;HaplotypeScore=66.0801;MLEAC=1;MLEAF=0.500;MQ=24.41;MQ0=39;MQRankSum=4.110;QD=4.66;ReadPosRankSum=-0.604;SB=-1.600e+02	GT:AD:DP:GQ:PL	0/1:86,72:160:99:775,0,211
chrX	745495	.	G	A	83.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.282;DP=152;Dels=0.05;FS=0.000;HaplotypeScore=197.7424;MLEAC=1;MLEAF=0.500;MQ=36.10;MQ0=4;MQRankSum=-0.426;QD=0.55;ReadPosRankSum=-0.733;SB=-1.101e+01	GT:AD:DP:GQ:PL	0/1:122,23:145:99:113,0,1364
chrX	745504	.	A	G	226.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;DP=160;Dels=0.04;FS=0.980;HaplotypeScore=232.3368;MLEAC=1;MLEAF=0.500;MQ=35.58;MQ0=5;MQRankSum=-2.293;QD=1.41;ReadPosRankSum=-1.538;SB=-5.201e+01	GT:AD:DP:GQ:PL	0/1:112,41:153:99:256,0,1306
chrX	745529	.	G	A	287.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;DP=160;Dels=0.00;FS=3.548;HaplotypeScore=31.6442;MLEAC=1;MLEAF=0.500;MQ=34.03;MQ0=4;MQRankSum=-2.168;QD=1.79;ReadPosRankSum=1.376;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:118,42:160:99:317,0,1196
chrX	745571	.	G	A	607.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;DP=118;Dels=0.00;FS=4.183;HaplotypeScore=14.5748;MLEAC=1;MLEAF=0.500;MQ=29.29;MQ0=1;MQRankSum=-5.012;QD=5.14;ReadPosRankSum=2.838;SB=-1.200e+02	GT:AD:DP:GQ:PL	0/1:33,85:118:99:637,0,440
chrX	745593	.	C	G	215.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;DP=83;Dels=0.00;FS=5.870;HaplotypeScore=58.7760;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=-1.120;QD=2.59;ReadPosRankSum=0.048;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,21:83:99:245,0,350
chrX	745597	.	A	T	522.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;DP=76;Dels=0.04;FS=5.154;HaplotypeScore=112.0348;MLEAC=1;MLEAF=0.500;MQ=27.22;MQ0=0;MQRankSum=-0.854;QD=6.87;ReadPosRankSum=3.331;SB=-1.401e+01	GT:AD:DP:GQ:PL	0/1:31,42:73:99:552,0,299
chrX	745598	.	A	G	506.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;DP=73;Dels=0.04;FS=5.310;HaplotypeScore=124.8574;MLEAC=1;MLEAF=0.500;MQ=26.98;MQ0=0;MQRankSum=-1.552;QD=6.93;ReadPosRankSum=2.943;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:28,42:70:99:536,0,269
chrX	745602	.	A	G	119.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;DP=75;Dels=0.00;FS=5.545;HaplotypeScore=122.5046;MLEAC=1;MLEAF=0.500;MQ=27.03;MQ0=0;MQRankSum=-0.212;QD=1.59;ReadPosRankSum=0.517;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,29:75:99:149,0,614
chrX	745609	.	T	C	554	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=97.9966;MLEAC=2;MLEAF=1.00;MQ=26.70;MQ0=0;QD=8.27;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,45:67:66:587,66,0
chrX	745622	.	T	G	198.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.506;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=205.5116;MLEAC=1;MLEAF=0.500;MQ=27.07;MQ0=0;MQRankSum=2.042;QD=3.05;ReadPosRankSum=0.024;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,20:65:99:228,0,240
chrX	745651	.	A	T	53.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;DP=73;Dels=0.00;FS=8.445;HaplotypeScore=40.1709;MLEAC=1;MLEAF=0.500;MQ=28.13;MQ0=0;MQRankSum=-0.321;QD=0.73;ReadPosRankSum=0.884;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,29:73:83:83,0,352
chrX	745680	.	G	T	130.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.152;DP=132;Dels=0.01;FS=2.397;HaplotypeScore=154.6920;MLEAC=1;MLEAF=0.500;MQ=25.09;MQ0=10;MQRankSum=4.507;QD=0.98;ReadPosRankSum=1.664;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:96,35:131:99:160,0,259
chrX	745747	.	G	T	21.04	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=23.5417;MLEAC=1;MLEAF=0.500;MQ=22.85;MQ0=6;MQRankSum=2.711;QD=0.51;ReadPosRankSum=-0.495;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,6:41:51:51,0,312
chrXI	280	.	C	T	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;DP=104;Dels=0.00;FS=29.325;HaplotypeScore=55.2020;MLEAC=1;MLEAF=0.500;MQ=17.94;MQ0=11;MQRankSum=0.110;QD=0.13;ReadPosRankSum=3.060;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:93,11:104:43:43,0,509
chrXI	289	.	C	T	268.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=42.1574;MLEAC=1;MLEAF=0.500;MQ=16.44;MQ0=20;MQRankSum=4.135;QD=2.55;ReadPosRankSum=2.540;SB=-1.600e+02	GT:AD:DP:GQ:PL	0/1:65,31:105:99:298,0,114
chrXI	299	.	T	C	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DP=114;Dels=0.00;FS=2.119;HaplotypeScore=44.7716;MLEAC=1;MLEAF=0.500;MQ=15.77;MQ0=29;MQRankSum=-0.943;QD=0.14;ReadPosRankSum=-2.552;SB=-4.501e+01	GT:AD:DP:GQ:PL	0/1:91,23:114:46:46,0,508
chrXI	324	.	T	A	106.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;DP=119;Dels=0.00;FS=6.594;HaplotypeScore=12.8865;MLEAC=1;MLEAF=0.500;MQ=15.47;MQ0=35;MQRankSum=0.866;QD=0.89;ReadPosRankSum=0.946;SB=-8.201e+01	GT:AD:DP:GQ:PL	0/1:94,25:119:99:136,0,404
chrXI	347	.	A	G	158.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.4667;MLEAC=1;MLEAF=0.500;MQ=15.97;MQ0=35;MQRankSum=3.660;QD=1.36;ReadPosRankSum=0.241;SB=-4.101e+01	GT:AD:DP:GQ:PL	0/1:105,11:116:99:188,0,308
chrXI	363	.	C	T	231.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=17.8114;MLEAC=1;MLEAF=0.500;MQ=17.74;MQ0=33;MQRankSum=1.828;QD=2.60;ReadPosRankSum=3.431;SB=-1.260e+02	GT:AD:DP:GQ:PL	0/1:62,24:89:99:261,0,149
chrXI	437	.	G	T	65.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;DP=33;Dels=0.00;FS=2.560;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.20;MQ0=1;MQRankSum=2.335;QD=1.97;ReadPosRankSum=-2.180;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,5:33:95:95,0,256
chrXI	438	.	T	C	403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=22.84;MQ0=1;MQRankSum=0.029;QD=11.19;ReadPosRankSum=2.799;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:3,33:36:48:436,48,0
chrXI	498	.	T	A	1328	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.614;DP=95;Dels=0.00;FS=18.827;HaplotypeScore=58.5640;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=5;MQRankSum=5.871;QD=13.98;ReadPosRankSum=3.306;SB=3.00	GT:AD:DP:GQ:PL	1/1:43,52:95:99:1361,101,0
chrXI	581	.	A	C	476	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7552;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=0;QD=7.10;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:57:509,57,0
chrXI	595	.	A	G	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;DP=74;Dels=0.00;FS=62.192;HaplotypeScore=24.7910;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=0;MQRankSum=0.087;QD=0.47;ReadPosRankSum=-4.461;SB=-2.350e+02	GT:AD:DP:GQ:PL	0/1:39,35:74:65:65,0,440
chrXI	624	.	T	C	31.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.954;DP=113;Dels=0.00;FS=34.980;HaplotypeScore=18.1310;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=0;MQRankSum=4.495;QD=0.27;ReadPosRankSum=1.385;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,44:113:61:61,0,447
chrXI	633	.	C	T	245.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.765;DP=91;Dels=0.00;FS=19.475;HaplotypeScore=77.3754;MLEAC=1;MLEAF=0.500;MQ=25.95;MQ0=1;MQRankSum=3.241;QD=2.69;ReadPosRankSum=1.426;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:42,49:91:99:275,0,418
chrXI	634	.	A	T	233.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.139;DP=90;Dels=0.00;FS=26.846;HaplotypeScore=77.3754;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=1;MQRankSum=1.862;QD=2.59;ReadPosRankSum=1.516;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,46:90:99:263,0,390
chrXI	639	.	C	T	248.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.238;DP=90;Dels=0.00;FS=19.979;HaplotypeScore=84.2653;MLEAC=1;MLEAF=0.500;MQ=26.05;MQ0=1;MQRankSum=2.983;QD=2.76;ReadPosRankSum=0.844;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:37,53:90:99:278,0,284
chrXI	648	.	T	C	179.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.558;DP=102;Dels=0.00;FS=59.020;HaplotypeScore=115.9071;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=2;MQRankSum=4.985;QD=1.75;ReadPosRankSum=3.813;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,49:102:99:209,0,355
chrXI	649	.	T	C	301.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.121;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=59.8180;MLEAC=1;MLEAF=0.500;MQ=24.82;MQ0=2;MQRankSum=2.739;QD=2.98;ReadPosRankSum=2.739;SB=-1.630e+02	GT:AD:DP:GQ:PL	0/1:38,63:101:99:331,0,248
chrXI	656	.	C	A	348.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.151;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=25.7718;MLEAC=1;MLEAF=0.500;MQ=24.29;MQ0=4;MQRankSum=3.650;QD=3.25;ReadPosRankSum=2.367;SB=-2.180e+02	GT:AD:DP:GQ:PL	0/1:35,72:107:99:378,0,199
chrXI	667	.	G	A	459.14	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;DP=104;Dels=0.00;FS=2.474;HaplotypeScore=11.4771;MLEAC=1;MLEAF=0.500;MQ=23.30;MQ0=4;MQRankSum=-2.950;QD=4.41;ReadPosRankSum=2.364;SB=-4.652e+02	GT:AD:DP:GQ:PL	0/1:3,101:104:12:489,0,12
chrXI	673	.	A	G	438.22	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DP=105;Dels=0.00;FS=2.211;HaplotypeScore=10.5193;MLEAC=1;MLEAF=0.500;MQ=23.36;MQ0=4;MQRankSum=-2.857;QD=4.17;ReadPosRankSum=3.640;SB=-3.572e+02	GT:AD:DP:GQ:PL	0/1:5,100:105:10:468,0,10
chrXI	689	.	T	A,G	481.01	filter	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.697;DP=103;Dels=0.00;FS=11.139;HaplotypeScore=11.3998;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.06;MQ0=5;MQRankSum=0.389;QD=4.67;ReadPosRankSum=1.697;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/2:2,89,12:103:99:541,147,99,394,0,376
chrXI	704	.	T	C	666	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=15.7925;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=4;MQRankSum=0.660;QD=7.57;ReadPosRankSum=0.784;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:78:699,78,0
chrXI	712	.	A	T	149.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;DP=93;Dels=0.00;FS=42.494;HaplotypeScore=19.4968;MLEAC=1;MLEAF=0.500;MQ=21.77;MQ0=4;MQRankSum=3.635;QD=1.60;ReadPosRankSum=0.256;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:83,10:93:99:179,0,344
chrXI	724	.	T	G	480	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=54.3780;MLEAC=2;MLEAF=1.00;MQ=20.55;MQ0=3;QD=6.76;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:57:513,57,0
chrXI	749	.	T	C	396.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.287;DP=63;Dels=0.00;FS=67.899;HaplotypeScore=32.4949;MLEAC=2;MLEAF=1.00;MQ=21.87;MQ0=1;MQRankSum=2.024;QD=6.29;ReadPosRankSum=2.706;SB=-5.102e+01	GT:AD:DP:GQ:PL	1/1:19,44:63:29:429,29,0
chrXI	755	.	T	C	424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.979;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=22.56;MQ0=1;MQRankSum=0.115;QD=6.95;ReadPosRankSum=1.675;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:54:457,54,0
chrXI	778	.	C	T	560.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.130;DP=91;Dels=0.00;FS=164.410;HaplotypeScore=30.9250;MLEAC=1;MLEAF=0.500;MQ=25.72;MQ0=6;MQRankSum=0.674;QD=6.15;ReadPosRankSum=3.514;SB=-5.433e-03	GT:AD:DP:GQ:PL	0/1:41,50:91:60:590,0,60
chrXI	802	.	C	T	236.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.880;DP=125;Dels=0.00;FS=114.735;HaplotypeScore=9.0791;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=7;MQRankSum=1.859;QD=1.89;ReadPosRankSum=3.204;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,31:125:99:266,0,1292
chrXI	804	.	C	T	247.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.485;DP=126;Dels=0.00;FS=126.155;HaplotypeScore=6.5124;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=7;MQRankSum=0.854;QD=1.96;ReadPosRankSum=3.577;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:96,30:126:99:277,0,1329
chrXI	806	.	C	G	236.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;DP=125;Dels=0.00;FS=124.893;HaplotypeScore=3.3576;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=7;MQRankSum=1.276;QD=1.89;ReadPosRankSum=3.458;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:95,30:125:99:266,0,1372
chrXI	808	.	A	C	242.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.648;DP=128;Dels=0.00;FS=122.823;HaplotypeScore=33.0969;MLEAC=1;MLEAF=0.500;MQ=25.77;MQ0=7;MQRankSum=2.163;QD=1.89;ReadPosRankSum=3.259;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:98,30:128:99:272,0,1470
chrXI	817	.	C	G	206.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;DP=141;Dels=0.00;FS=137.159;HaplotypeScore=42.4589;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=7;MQRankSum=1.785;QD=1.46;ReadPosRankSum=1.257;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:111,30:141:99:236,0,1570
chrXI	818	.	T	A	1301.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DP=142;Dels=0.00;FS=74.965;HaplotypeScore=180.8758;MLEAC=1;MLEAF=0.500;MQ=25.78;MQ0=7;MQRankSum=-1.752;QD=9.16;ReadPosRankSum=1.805;SB=-5.710e+02	GT:AD:DP:GQ:PL	0/1:43,99:142:99:1331,0,531
chrXI	819	.	A	G	178.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554;DP=143;Dels=0.00;FS=137.159;HaplotypeScore=152.0277;MLEAC=1;MLEAF=0.500;MQ=25.80;MQ0=7;MQRankSum=2.298;QD=1.24;ReadPosRankSum=0.227;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:112,30:143:99:208,0,1685
chrXI	823	.	C	T	131.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.917;DP=168;Dels=0.00;FS=200.659;HaplotypeScore=87.1643;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=7;MQRankSum=0.862;QD=0.78;ReadPosRankSum=-5.428;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:116,52:168:99:161,0,1703
chrXI	830	.	A	G	145.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.436;DP=181;Dels=0.00;FS=221.366;HaplotypeScore=56.4918;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=7;MQRankSum=0.996;QD=0.80;ReadPosRankSum=-5.929;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:128,53:181:99:175,0,2085
chrXI	831	.	C	T	923.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.415;DP=183;Dels=0.00;FS=33.498;HaplotypeScore=60.3589;MLEAC=1;MLEAF=0.500;MQ=25.28;MQ0=7;MQRankSum=-0.915;QD=5.04;ReadPosRankSum=5.100;SB=-2.630e+02	GT:AD:DP:GQ:PL	0/1:103,79:183:99:953,0,1199
chrXI	837	.	T	C	173.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534;DP=193;Dels=0.00;FS=239.613;HaplotypeScore=62.4106;MLEAC=1;MLEAF=0.500;MQ=25.39;MQ0=7;MQRankSum=0.922;QD=0.90;ReadPosRankSum=-5.805;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:139,53:193:99:203,0,2192
chrXI	841	.	G	T	213.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.086;DP=198;Dels=0.00;FS=260.075;HaplotypeScore=59.3865;MLEAC=1;MLEAF=0.500;MQ=25.53;MQ0=7;MQRankSum=-0.412;QD=1.08;ReadPosRankSum=-6.506;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:139,59:198:99:243,0,2069
chrXI	882	.	T	C	1979.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;DP=130;Dels=0.00;FS=18.831;HaplotypeScore=8.7190;MLEAC=1;MLEAF=0.500;MQ=26.35;MQ0=0;MQRankSum=0.336;QD=15.22;ReadPosRankSum=1.849;SB=-4.460e+02	GT:AD:DP:GQ:PL	0/1:23,107:130:99:2009,0,189
chrXI	903	.	C	T	1555.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;DP=101;Dels=0.00;FS=14.509;HaplotypeScore=3.5456;MLEAC=1;MLEAF=0.500;MQ=26.87;MQ0=0;MQRankSum=1.753;QD=15.40;ReadPosRankSum=1.526;SB=-2.930e+02	GT:AD:DP:GQ:PL	0/1:23,78:101:99:1585,0,234
chrXI	911	.	A	T	1586.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;DP=100;Dels=0.00;FS=16.981;HaplotypeScore=8.1310;MLEAC=1;MLEAF=0.500;MQ=26.50;MQ0=1;MQRankSum=1.315;QD=15.86;ReadPosRankSum=-0.915;SB=-3.930e+02	GT:AD:DP:GQ:PL	0/1:23,77:100:99:1616,0,180
chrXI	986	.	C	T	4833.01	PASS	AC=2;AF=1.00;AN=2;DP=232;Dels=0.00;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=3;QD=20.83;SB=-1.782e+03	GT:AD:DP:GQ:PL	1/1:0,232:232:99:4833,519,0
chrXI	1021	.	T	A	1214.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.977;DP=188;Dels=0.00;FS=25.370;HaplotypeScore=10.3832;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=3;MQRankSum=4.288;QD=6.46;ReadPosRankSum=-2.342;SB=-9.701e+01	GT:AD:DP:GQ:PL	0/1:101,87:188:99:1244,0,1486
chrXI	1061	.	C	A	110.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=15.8171;MLEAC=1;MLEAF=0.500;MQ=23.40;MQ0=3;MQRankSum=1.309;QD=2.39;ReadPosRankSum=-2.190;SB=-5.501e+01	GT:AD:DP:GQ:PL	0/1:31,15:46:99:140,0,241
chrXI	1067	.	T	C	131.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=23;Dels=0.00;FS=9.108;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=20.24;MQ0=2;MQRankSum=0.066;QD=5.70;ReadPosRankSum=2.192;SB=-1.096e+02	GT:AD:DP:GQ:PL	1/1:2,19:23:18:164,18,0
chrXI	1117	.	A	G	53.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;DP=21;Dels=0.00;FS=14.819;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=7;MQRankSum=-0.156;QD=2.52;ReadPosRankSum=-0.934;SB=-2.987e+00	GT:AD:DP:GQ:PL	0/1:10,11:21:27:83,0,27
chrXI	1129	.	T	A	192.14	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;DP=30;Dels=0.00;FS=24.031;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=21.65;MQ0=7;MQRankSum=0.709;QD=6.40;ReadPosRankSum=-1.909;SB=-3.151e+00	GT:AD:DP:GQ:PL	0/1:8,22:30:12:222,0,12
chrXI	1136	.	G	T	203.27	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;DP=33;Dels=0.00;FS=25.119;HaplotypeScore=1.9628;MLEAC=1;MLEAF=0.500;MQ=22.42;MQ0=7;MQRankSum=0.914;QD=6.16;ReadPosRankSum=-0.433;SB=-3.282e+00	GT:AD:DP:GQ:PL	0/1:8,25:33:9:233,0,9
chrXI	1153	.	G	A	231.52	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DP=43;Dels=0.00;FS=28.235;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.95;MQ0=6;MQRankSum=1.108;QD=5.38;ReadPosRankSum=0.974;SB=-3.531e+00	GT:AD:DP:GQ:PL	0/1:8,35:43:6:261,0,6
chrXI	1167	.	T	C	373	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=43.2236;MLEAC=2;MLEAF=1.00;MQ=23.90;MQ0=4;QD=6.43;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:4,54:58:48:406,48,0
chrXI	1179	.	T	C	185.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=49.9033;MLEAC=2;MLEAF=1.00;MQ=24.86;MQ0=4;MQRankSum=-0.027;QD=2.76;ReadPosRankSum=-1.512;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:5,62:67:24:218,24,0
chrXI	1187	.	A	T	295.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.7857;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=4;MQRankSum=-1.728;QD=3.35;ReadPosRankSum=3.144;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:27,61:88:99:325,0,265
chrXI	1200	.	G	T	254.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.669;DP=110;Dels=0.00;FS=14.835;HaplotypeScore=7.9348;MLEAC=1;MLEAF=0.500;MQ=25.29;MQ0=4;MQRankSum=0.322;QD=2.31;ReadPosRankSum=2.266;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,60:110:99:284,0,559
chrXI	1203	.	G	C	515.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.501;DP=110;Dels=0.00;FS=8.156;HaplotypeScore=7.9348;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=3;MQRankSum=1.917;QD=4.68;ReadPosRankSum=0.609;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,43:110:99:545,0,316
chrXI	1212	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.9770;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=3;QD=10.69;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,127:127:99:1390,153,0
chrXI	1220	.	C	T	287.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.858;DP=128;Dels=0.00;FS=12.688;HaplotypeScore=4.3852;MLEAC=1;MLEAF=0.500;MQ=25.75;MQ0=3;MQRankSum=0.630;QD=2.24;ReadPosRankSum=-6.804;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,64:128:99:317,0,709
chrXI	1233	.	T	A	215.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.923;DP=125;Dels=0.00;FS=8.993;HaplotypeScore=3.4880;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=3;MQRankSum=1.513;QD=1.72;ReadPosRankSum=-9.483;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,55:125:99:245,0,915
chrXI	1272	.	G	A	803	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;DP=70;Dels=0.00;FS=58.578;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=4;MQRankSum=1.760;QD=11.47;ReadPosRankSum=1.384;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:6,64:70:67:836,67,0
chrXI	1284	.	T	C	525	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.96;MQ0=1;QD=10.71;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,49:49:63:558,63,0
chrXI	1299	.	G	A	635	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=1;QD=14.43;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:69:668,69,0
chrXI	1305	.	G	A	628	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=17.9409;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=1;QD=15.70;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:69:661,69,0
chrXI	1322	.	C	G	124.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.276;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=1;MQRankSum=-2.324;QD=3.10;ReadPosRankSum=0.967;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,16:40:99:154,0,233
chrXI	1323	.	G	C	121.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.09;MQ0=1;MQRankSum=-2.670;QD=3.03;ReadPosRankSum=0.967;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,16:40:99:151,0,270
chrXI	1347	.	C	A	566	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=16.65;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:63:599,63,0
chrXI	1348	.	A	C	512	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=0;QD=15.06;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:63:545,63,0
chrXI	1354	.	A	G	204.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.48;MQ0=0;MQRankSum=-0.528;QD=4.98;ReadPosRankSum=-0.392;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:15,26:41:99:234,0,229
chrXI	1360	.	T	C	168.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.588;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=0;MQRankSum=0.041;QD=3.91;ReadPosRankSum=0.636;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,15:43:99:198,0,250
chrXI	1366	.	T	C	555	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=13.54;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:63:588,63,0
chrXI	1379	.	G	A	313	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.79;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,29:29:36:346,36,0
chrXI	1381	.	T	C	296	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.26;MQ0=0;QD=10.21;SB=-8.700e-03	GT:AD:DP:GQ:PL	1/1:0,29:29:36:329,36,0
chrXI	1411	.	C	T	174.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=1.552;QD=9.16;ReadPosRankSum=1.552;SB=-7.494e-02	GT:AD:DP:GQ:PL	1/1:1,18:19:21:207,21,0
chrXI	1417	.	C	A	134.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.302;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=0;MQRankSum=1.519;QD=8.38;ReadPosRankSum=1.519;SB=-1.418e-01	GT:AD:DP:GQ:PL	1/1:1,15:16:18:167,18,0
chrXI	2326	.	A	G	346	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.99;MQ0=17;MQRankSum=-1.734;QD=9.11;ReadPosRankSum=1.569;SB=-1.190e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:45:379,45,0
chrXI	2610	.	T	G	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.339;DP=65;Dels=0.00;FS=138.282;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=20.32;MQ0=13;MQRankSum=5.622;QD=0.28;ReadPosRankSum=1.061;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:41,21:65:48:48,0,105
chrXI	2624	.	C	T	24.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;DP=51;Dels=0.00;FS=79.251;HaplotypeScore=5.2160;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=13;MQRankSum=4.438;QD=0.47;ReadPosRankSum=0.409;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:31,20:51:54:54,0,106
chrXI	2626	.	T	A	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;DP=51;Dels=0.00;FS=79.251;HaplotypeScore=4.2581;MLEAC=1;MLEAF=0.500;MQ=20.50;MQ0=13;MQRankSum=4.361;QD=0.45;ReadPosRankSum=0.167;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:31,20:51:53:53,0,80
chrXI	2639	.	C	T	30.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;DP=50;Dels=0.00;FS=73.781;HaplotypeScore=5.7953;MLEAC=1;MLEAF=0.500;MQ=20.66;MQ0=14;MQRankSum=4.218;QD=0.60;ReadPosRankSum=-0.271;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:29,21:50:60:60,0,85
chrXI	2653	.	T	C	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=38;Dels=0.00;FS=67.160;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.12;MQ0=12;MQRankSum=4.205;QD=0.27;ReadPosRankSum=1.385;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:24,14:38:40:40,0,64
chrXI	2662	.	T	C	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=36;Dels=0.00;FS=69.849;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=20.68;MQ0=10;MQRankSum=4.243;QD=0.39;ReadPosRankSum=2.032;SB=-3.015e+00	GT:AD:DP:GQ:PL	0/1:24,12:36:44:44,0,66
chrXI	2720	.	A	G	45.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.271;DP=12;Dels=0.00;FS=3.310;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=2;MQRankSum=1.271;QD=3.83;ReadPosRankSum=0.480;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:4,8:12:9:78,9,0
chrXI	2721	.	G	A	55.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.036;DP=12;Dels=0.00;FS=11.181;HaplotypeScore=3.8313;MLEAC=2;MLEAF=1.00;MQ=22.44;MQ0=2;MQRankSum=0.365;QD=4.66;ReadPosRankSum=2.383;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:8,4:12:9:88,9,0
chrXI	2734	.	C	T	196.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.02;MQ0=0;QD=16.34;SB=-8.191e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:24:229,24,0
chrXI	2739	.	A	C	85.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DP=20;Dels=0.00;FS=6.043;HaplotypeScore=12.9022;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=0;MQRankSum=0.951;QD=4.25;ReadPosRankSum=1.506;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:13,7:20:90:115,0,90
chrXI	2740	.	T	C	82.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;DP=20;Dels=0.00;FS=18.402;HaplotypeScore=12.9056;MLEAC=1;MLEAF=0.500;MQ=25.38;MQ0=0;MQRankSum=2.585;QD=4.10;ReadPosRankSum=-0.733;SB=-1.366e-03	GT:AD:DP:GQ:PL	0/1:8,12:20:88:112,0,88
chrXI	2750	.	A	T	61.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DP=25;Dels=0.00;FS=5.527;HaplotypeScore=26.2843;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=0;MQRankSum=1.367;QD=2.44;ReadPosRankSum=1.233;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,6:25:91:91,0,91
chrXI	2752	.	G	A	55.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;DP=26;Dels=0.00;FS=5.557;HaplotypeScore=20.3979;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=0;MQRankSum=0.347;QD=2.12;ReadPosRankSum=0.751;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:19,7:26:85:85,0,113
chrXI	2753	.	C	T	57.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;DP=26;Dels=0.00;FS=5.557;HaplotypeScore=20.3979;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=0;MQRankSum=-0.058;QD=2.19;ReadPosRankSum=0.636;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:19,7:26:87:87,0,110
chrXI	2811	.	T	C	56.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;DP=49;Dels=0.00;FS=12.025;HaplotypeScore=22.7507;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=1;MQRankSum=3.324;QD=1.14;ReadPosRankSum=-0.549;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:29,20:49:86:86,0,241
chrXI	2812	.	G	A	86.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;DP=48;Dels=0.00;FS=9.161;HaplotypeScore=23.5394;MLEAC=1;MLEAF=0.500;MQ=24.96;MQ0=1;MQRankSum=2.581;QD=1.79;ReadPosRankSum=-0.964;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,20:48:99:116,0,209
chrXI	2820	.	A	T	124.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;DP=51;Dels=0.00;FS=6.295;HaplotypeScore=34.4297;MLEAC=1;MLEAF=0.500;MQ=25.21;MQ0=1;MQRankSum=-3.628;QD=2.43;ReadPosRankSum=1.416;SB=-5.701e+01	GT:AD:DP:GQ:PL	0/1:25,26:51:99:154,0,129
chrXI	2823	.	C	T	91.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;DP=47;Dels=0.00;FS=5.994;HaplotypeScore=46.4390;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=1;MQRankSum=2.976;QD=1.94;ReadPosRankSum=0.839;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:27,19:47:99:121,0,177
chrXI	2825	.	T	G	81.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;DP=44;Dels=0.02;FS=5.857;HaplotypeScore=34.3695;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=1;MQRankSum=3.357;QD=1.84;ReadPosRankSum=0.589;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:26,17:43:99:111,0,189
chrXI	2826	.	G	T	84.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.562;DP=44;Dels=0.02;FS=5.857;HaplotypeScore=42.2100;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=1;MQRankSum=3.485;QD=1.91;ReadPosRankSum=0.615;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:26,17:43:99:114,0,163
chrXI	2840	.	A	G	187.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;DP=37;Dels=0.00;FS=11.957;HaplotypeScore=34.7704;MLEAC=1;MLEAF=0.500;MQ=26.88;MQ0=1;MQRankSum=1.059;QD=5.06;ReadPosRankSum=0.802;SB=-2.906e+01	GT:AD:DP:GQ:PL	0/1:22,15:37:16:217,0,16
chrXI	2849	.	C	A	204.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.364;DP=36;Dels=0.00;FS=6.698;HaplotypeScore=17.9661;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=1;MQRankSum=0.500;QD=5.67;ReadPosRankSum=2.191;SB=-5.922e+01	GT:AD:DP:GQ:PL	0/1:19,16:36:10:234,0,10
chrXI	2851	.	G	A	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;DP=31;Dels=0.00;FS=2.696;HaplotypeScore=6.2769;MLEAC=1;MLEAF=0.500;MQ=28.96;MQ0=0;MQRankSum=2.938;QD=0.37;ReadPosRankSum=0.283;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,9:31:41:41,0,267
chrXI	2865	.	A	T	240.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;DP=26;Dels=0.00;FS=5.798;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=32.64;MQ0=0;MQRankSum=-0.377;QD=9.23;ReadPosRankSum=4.096;SB=-1.151e+02	GT:AD:DP:GQ:PL	0/1:9,17:26:16:270,0,16
chrXI	2928	.	A	G	525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.34;MQ0=0;MQRankSum=1.467;QD=20.19;ReadPosRankSum=1.600;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:1,25:26:63:558,63,0
chrXI	2946	.	T	C	478	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;QD=23.90;SB=-6.545e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:54:511,54,0
chrXI	2960	.	C	T	446	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=23.47;SB=-6.571e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:51:479,51,0
chrXI	3028	.	G	A	547	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=21.88;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:66:580,66,0
chrXI	3030	.	C	A	476	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.48;MQ0=0;QD=19.04;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:60:509,60,0
chrXI	3042	.	T	G	534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;MQRankSum=-1.733;QD=19.78;ReadPosRankSum=1.605;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:1,26:27:66:567,66,0
chrXI	3047	.	C	T	586	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.70;MQ0=0;QD=20.93;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:72:619,72,0
chrXI	3107	.	T	G	734	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=23.68;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:84:767,84,0
chrXI	3136	.	T	C	812	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.88;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:93:845,93,0
chrXI	3207	.	C	T	1485	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=24.34;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1518,156,0
chrXI	3224	.	A	C	1361	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.95;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1394,156,0
chrXI	3263	.	A	G	813	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=20.85;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:93:846,93,0
chrXI	3277	.	T	C	704	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=19.56;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:81:737,81,0
chrXI	3299	.	T	C	518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.196;DP=36;Dels=0.00;FS=2.529;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=0.428;QD=14.39;ReadPosRankSum=3.196;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:4,32:36:63:551,63,0
chrXI	3391	.	C	T	561	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=11.94;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:63:594,63,0
chrXI	3393	.	G	A	559	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=11.65;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:63:592,63,0
chrXI	3599	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=21.45;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1213,129,0
chrXI	3638	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=6.329;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=1.353;QD=18.22;ReadPosRankSum=1.685;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1363,147,0
chrXI	3640	.	T	A	1380	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=19.44;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1413,147,0
chrXI	3696	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.05;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1712,189,0
chrXI	3898	.	A	G	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.311;QD=22.90;ReadPosRankSum=1.688;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1865,201,0
chrXI	3926	.	A	G	1906	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=91;Dels=0.00;FS=3.003;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-0.994;QD=20.95;ReadPosRankSum=2.338;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:2,86:91:99:1939,207,0
chrXI	3968	.	A	T	2693	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.0948;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-2.145;QD=22.26;ReadPosRankSum=1.677;SB=-1.425e+03	GT:AD:DP:GQ:PL	1/1:2,119:121:99:2726,297,0
chrXI	4436	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.65;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1437,159,0
chrXI	4534	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=20.89;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1161,120,0
chrXI	5078	.	A	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.03;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1375,147,0
chrXI	5087	.	T	G	1138	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.97;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1171,126,0
chrXI	5434	.	C	T	1327	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=17.69;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1360,144,0
chrXI	5655	.	T	A	3233.06	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=17.7900;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.93;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3265,339,0
chrXI	5928	.	G	A	2770	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.98;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,122:126:99:2803,294,0
chrXI	6055	.	T	C	1875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=-0.816;QD=21.55;ReadPosRankSum=1.692;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1908,207,0
chrXI	6097	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.81;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1698,177,0
chrXI	6138	.	G	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.76;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1337,144,0
chrXI	6167	.	G	A	1783	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.73;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1816,195,0
chrXI	6589	.	A	G	1050	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=55;Dels=0.00;FS=3.093;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.360;QD=19.09;ReadPosRankSum=1.667;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,52:55:99:1083,123,0
chrXI	6833	.	G	T	1839	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.7282;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.43;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1872,201,0
chrXI	7021	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.01;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1258,135,0
chrXI	7040	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.77;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1103,123,0
chrXI	7552	.	A	T	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-0.220;QD=21.68;ReadPosRankSum=1.683;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1572,168,0
chrXI	7556	.	A	G	1479	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.728;QD=21.43;ReadPosRankSum=1.682;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1512,165,0
chrXI	7571	.	T	A	1409	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=22.73;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1442,153,0
chrXI	7595	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=20.14;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1483,159,0
chrXI	7651	.	A	C	876	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=178.3248;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=13.07;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:909,102,0
chrXI	7664	.	A	T	87.26	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=55.4951;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=1.18;SB=-8.253e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:15:120,15,0
chrXI	7691	.	C	T	771	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=0;QD=11.17;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:84:804,84,0
chrXI	7704	.	A	G	849	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;QD=11.79;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:882,99,0
chrXI	7717	.	G	A	1063	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=14.17;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1096,120,0
chrXI	7726	.	C	T	1118	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=16.20;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1151,120,0
chrXI	7940	.	A	G	1835	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=22.65;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1868,213,0
chrXI	8044	.	G	A	1994	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=22.16;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2027,210,0
chrXI	8079	.	C	T	1908	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.74;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1941,207,0
chrXI	8174	.	G	C	1734	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.48;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1767,192,0
chrXI	8180	.	T	C	1584	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=18.64;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1617,174,0
chrXI	8204	.	C	G	1762	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=17.11;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1795,195,0
chrXI	8305	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.16;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1704,186,0
chrXI	8317	.	A	G	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.634;QD=15.83;ReadPosRankSum=1.690;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1331,144,0
chrXI	8368	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=15.10;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1135,123,0
chrXI	8566	.	A	T	2768	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0320;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.71;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2801,300,0
chrXI	8651	.	G	A	1839	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.43;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1872,204,0
chrXI	8716	.	T	G	1574	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-1.590;QD=21.56;ReadPosRankSum=1.637;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1607,174,0
chrXI	8828	.	A	G	1378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.680;QD=20.88;ReadPosRankSum=1.680;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1411,162,0
chrXI	8855	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.47;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1363,144,0
chrXI	8856	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.26;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1458,156,0
chrXI	8893	.	A	C	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=0.204;QD=18.68;ReadPosRankSum=1.698;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,101:103:99:1957,219,0
chrXI	8980	.	C	T	2455	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.73;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2488,264,0
chrXI	9055	.	T	C	2313	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.82;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2346,258,0
chrXI	9262	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.99;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1362,147,0
chrXI	9915	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.38;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1556,162,0
chrXI	10393	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.25;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1329,147,0
chrXI	10540	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.1388;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.69;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1490,165,0
chrXI	10550	.	C	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.68;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1546,162,0
chrXI	10762	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.37;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1800,195,0
chrXI	10969	.	T	C	2275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=127;Dels=0.00;FS=3.114;HaplotypeScore=6.0333;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.268;QD=17.91;ReadPosRankSum=1.705;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:1,126:127:99:2308,261,0
chrXI	11657	.	A	C	2361	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.49;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2394,264,0
chrXI	11792	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.68;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1702,189,0
chrXI	12060	.	C	T	1937	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.61;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1970,210,0
chrXI	12080	.	A	G	1364	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=5.039;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-1.008;QD=20.06;ReadPosRankSum=1.681;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1397,159,0
chrXI	12136	.	T	A	955	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.05;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:988,108,0
chrXI	12224	.	T	C	1617	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=23.43;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1650,183,0
chrXI	12256	.	G	A	1807	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=22.87;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1840,192,0
chrXI	12271	.	G	T	1635	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=18.37;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1668,183,0
chrXI	12322	.	C	T	1611	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.32;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1644,180,0
chrXI	12346	.	G	A	1428	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=17.41;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1461,162,0
chrXI	12369	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=3.076;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=-1.422;QD=17.82;ReadPosRankSum=1.681;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1245,141,0
chrXI	12437	.	C	T	1734	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=23.75;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1767,183,0
chrXI	12451	.	A	C	1669	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=21.96;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1702,186,0
chrXI	12460	.	G	A	1658	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=21.82;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1691,180,0
chrXI	12525	.	T	C	1592	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=20.95;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1625,183,0
chrXI	12560	.	G	A	1565	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.87;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1598,168,0
chrXI	12572	.	T	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=19.35;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1368,150,0
chrXI	12606	.	T	C	1077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.500;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-1.397;QD=17.37;ReadPosRankSum=1.676;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1110,123,0
chrXI	12620	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.381;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;MQRankSum=-0.828;QD=14.99;ReadPosRankSum=-1.582;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:94:1067,94,0
chrXI	12646	.	T	C	1014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=3.571;HaplotypeScore=4.4436;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=0.052;QD=15.13;ReadPosRankSum=1.680;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1047,114,0
chrXI	12708	.	G	A	1100	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=16.92;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1133,123,0
chrXI	12724	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;MQRankSum=0.153;QD=13.87;ReadPosRankSum=1.681;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:990,108,0
chrXI	12741	.	A	G	988	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=73;Dels=0.00;FS=7.241;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.03;MQ0=0;MQRankSum=0.118;QD=13.53;ReadPosRankSum=2.315;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1021,111,0
chrXI	12770	.	G	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=14.42;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1259,135,0
chrXI	12868	.	T	C	1670	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.88;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1703,189,0
chrXI	13003	.	G	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=21.35;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1506,168,0
chrXI	13039	.	C	G	1483	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.04;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1516,171,0
chrXI	13115	.	T	G	2768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;MQRankSum=-0.157;QD=22.88;ReadPosRankSum=1.703;SB=-1.595e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2801,309,0
chrXI	13223	.	C	T	2783	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1453;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.00;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2816,297,0
chrXI	13282	.	T	C	1938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.959;QD=18.82;ReadPosRankSum=1.698;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1971,222,0
chrXI	13310	.	G	A	1655	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.02;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1688,180,0
chrXI	13330	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=17.02;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1429,159,0
chrXI	13362	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.47;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1588,171,0
chrXI	13378	.	A	G	1753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.726;QD=18.65;ReadPosRankSum=1.695;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1786,198,0
chrXI	13443	.	T	C	2966	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.01;FS=0.000;HaplotypeScore=11.9239;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.30;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2999,333,0
chrXI	13542	.	A	C	2051	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.54;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2084,231,0
chrXI	13635	.	A	T	1721	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.06;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1754,183,0
chrXI	13670	.	G	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.86;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1618,171,0
chrXI	13712	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=17.94;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1594,168,0
chrXI	13729	.	T	G	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=3.522;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-0.346;QD=13.69;ReadPosRankSum=1.655;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,89:94:99:1320,144,0
chrXI	13813	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.85;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1654,180,0
chrXI	13945	.	C	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.71;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1835,192,0
chrXI	13973	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.2071;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.87;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1911,204,0
chrXI	14122	.	C	T	2543	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=21.92;SB=-1.368e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2576,282,0
chrXI	14280	.	G	C	2185	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.75;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2218,246,0
chrXI	14320	.	G	A	1671	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=23.21;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1704,183,0
chrXI	14350	.	A	G	1193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;MQRankSum=0.192;QD=18.94;ReadPosRankSum=1.677;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1226,138,0
chrXI	14360	.	A	G	1234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=0.171;QD=17.38;ReadPosRankSum=1.683;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1267,138,0
chrXI	14361	.	A	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=19.52;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1380,144,0
chrXI	14438	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=17.62;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1337,153,0
chrXI	14550	.	C	T	1988	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.95;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2021,216,0
chrXI	14569	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=22.09;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2065,219,0
chrXI	14625	.	G	A	1369	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=21.39;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1402,144,0
chrXI	14729	.	T	C	774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;MQRankSum=0.666;QD=19.85;ReadPosRankSum=1.644;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:87:807,87,0
chrXI	14819	.	G	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.89;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1178,123,0
chrXI	15132	.	A	G	715	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.86;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:81:748,81,0
chrXI	15715	.	G	A	835	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.42;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:90:868,90,0
chrXI	15842	.	A	G	1012	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1045,114,0
chrXI	15843	.	A	G	990	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.409;QD=18.00;ReadPosRankSum=1.669;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1023,114,0
chrXI	15848	.	A	G	1015	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.45;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1048,111,0
chrXI	16142	.	C	T	49.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.49;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:9:82,9,0
chrXI	16259	.	T	G	922	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.230;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-1.214;QD=16.46;ReadPosRankSum=2.362;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,54:56:99:955,102,0
chrXI	16263	.	T	A	863	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=14.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:896,99,0
chrXI	16303	.	T	C	2114	filter	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.1717;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.14;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2147,228,0
chrXI	16344	.	T	C	1606	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.94;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1639,183,0
chrXI	16345	.	T	C	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.330;QD=22.62;ReadPosRankSum=2.381;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1662,180,0
chrXI	16395	.	T	C	888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.584;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=1.536;QD=18.12;ReadPosRankSum=3.518;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:5,44:49:85:921,85,0
chrXI	16425	.	G	A	1401	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=24.58;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1434,150,0
chrXI	16603	.	G	T	2173	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9140;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;QD=19.23;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2206,237,0
chrXI	16671	.	T	C	2499	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=0.953;QD=20.82;ReadPosRankSum=1.646;SB=-1.525e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2532,276,0
chrXI	16738	.	T	C	2041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=7.159;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=0.072;QD=23.73;ReadPosRankSum=2.393;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:2074,225,0
chrXI	17061	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.81;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2063,225,0
chrXI	17217	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.04;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1596,168,0
chrXI	17570	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.15;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1748,183,0
chrXI	17599	.	G	T	1959	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.89;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1992,207,0
chrXI	17681	.	A	G	2027	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6553;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.68;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2060,231,0
chrXI	18001	.	G	T	1134	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.00;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1167,126,0
chrXI	18726	.	G	A	2219	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.88;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2252,240,0
chrXI	18848	.	A	G	2306	SnpCluster	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=18.60;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2339,261,0
chrXI	18850	.	G	C	2278	SnpCluster	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=18.37;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2311,258,0
chrXI	18852	.	A	T	2488	SnpCluster	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=20.06;SB=-1.674e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2521,261,0
chrXI	18863	.	T	A	2194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=-1.150;QD=17.41;ReadPosRankSum=1.704;SB=-1.629e+03	GT:AD:DP:GQ:PL	1/1:1,125:126:99:2227,234,0
chrXI	18921	.	G	A	1600	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=17.02;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1633,171,0
chrXI	19032	.	C	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.48;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1712,183,0
chrXI	19074	.	C	T	2025	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7194;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.54;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2058,219,0
chrXI	19206	.	T	C	2726	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=22.72;SB=-1.501e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2759,297,0
chrXI	19335	.	C	T	1879	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=21.11;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1912,213,0
chrXI	19367	.	G	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=22.74;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1625,171,0
chrXI	19443	.	C	T	2031	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.41;MQ0=0;QD=19.72;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2064,219,0
chrXI	19447	.	T	G	1899	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=17.58;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1932,216,0
chrXI	19491	.	C	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=15.81;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1567,162,0
chrXI	19503	.	A	G	1063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.895;QD=13.29;ReadPosRankSum=2.327;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1096,123,0
chrXI	19521	.	C	T	964	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=13.39;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:997,102,0
chrXI	19529	.	C	T	557	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=8.44;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:66:590,66,0
chrXI	19537	.	C	G	625	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=13.59;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:72:658,72,0
chrXI	19538	.	G	A	647	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=14.07;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:72:680,72,0
chrXI	19563	.	C	T	796	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;QD=13.96;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:87:829,87,0
chrXI	19629	.	C	T	798	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;QD=12.67;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:84:831,84,0
chrXI	19632	.	T	C	783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=9.031;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.108;QD=12.23;ReadPosRankSum=1.678;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:90:816,90,0
chrXI	19657	.	T	C	1369	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.55;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1402,153,0
chrXI	19921	.	A	G	883	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=18.79;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:916,102,0
chrXI	20275	.	C	T	908	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.18;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:941,102,0
chrXI	20395	.	C	G	1986	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.2204;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.31;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:2019,222,0
chrXI	20424	.	A	G	2167	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.46;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2200,243,0
chrXI	20462	.	T	G	1942	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=21.82;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1975,222,0
chrXI	20476	.	A	G	1920	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=22.07;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1953,213,0
chrXI	20594	.	C	T	1467	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=20.10;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1500,162,0
chrXI	20616	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=19.42;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1295,147,0
chrXI	20761	.	T	C	1958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=91;Dels=0.00;FS=3.046;HaplotypeScore=10.4756;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=-1.536;QD=21.52;ReadPosRankSum=2.284;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:2,87:91:99:1991,216,0
chrXI	20824	.	A	T	2630	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.8991;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=21.74;SB=-1.434e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2663,282,0
chrXI	20955	.	G	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.73;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1829,192,0
chrXI	21006	.	C	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.29;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1347,150,0
chrXI	21193	.	C	T	2235	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.32;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2268,240,0
chrXI	21194	.	A	G	2206	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.01;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.08;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2239,240,0
chrXI	21250	.	A	T	121.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=4.297;HaplotypeScore=51.5198;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-0.577;QD=1.55;ReadPosRankSum=1.599;SB=-7.441e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:18:154,18,0
chrXI	21328	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.7133;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.66;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1098,117,0
chrXI	21391	.	T	C	689	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.97;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:722,78,0
chrXI	21546	.	A	G	896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=-0.433;QD=16.00;ReadPosRankSum=1.609;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:929,102,0
chrXI	21568	.	T	C	881	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=15.73;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:914,102,0
chrXI	21855	.	C	T	1127	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.49;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1160,126,0
chrXI	21870	.	T	C	1000	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.86;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1033,114,0
chrXI	22075	.	G	T	345	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=4.5042;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=4.11;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:39:378,39,0
chrXI	22082	.	G	A	531	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0880;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=0;QD=5.31;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,97:100:60:564,60,0
chrXI	22088	.	C	T	772	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0191;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=7.96;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:84:805,84,0
chrXI	22120	.	T	G	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.6318;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;MQRankSum=-0.151;QD=14.60;ReadPosRankSum=1.318;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:1,91:94:99:1405,153,0
chrXI	22343	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.21;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1379,147,0
chrXI	22917	.	C	T	1462	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.76;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1495,159,0
chrXI	23064	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.22;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1345,147,0
chrXI	23463	.	T	C	1587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.287;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.406;QD=19.35;ReadPosRankSum=1.689;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1620,183,0
chrXI	24181	.	A	G	3876.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.713;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.369;QD=21.18;ReadPosRankSum=1.694;SB=-1.821e+03	GT:AD:DP:GQ:PL	1/1:1,182:183:99:3876,441,0
chrXI	24282	.	A	G	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=89;Dels=0.00;FS=6.088;HaplotypeScore=2.1968;MLEAC=2;MLEAF=1.00;MQ=44.22;MQ0=0;MQRankSum=-2.194;QD=18.24;ReadPosRankSum=2.853;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:3,86:89:99:1656,183,0
chrXI	24291	.	C	T	1469	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=16.89;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1502,165,0
chrXI	24307	.	G	A	1490	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=15.52;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1523,159,0
chrXI	24311	.	A	T	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.55;MQ0=0;MQRankSum=1.232;QD=14.08;ReadPosRankSum=1.661;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1399,147,0
chrXI	24330	.	A	C	745	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.737;DP=91;Dels=0.00;FS=9.189;HaplotypeScore=14.3901;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.380;QD=8.19;ReadPosRankSum=4.815;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:13,78:91:79:778,79,0
chrXI	24332	.	T	G	141.54	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.028;DP=91;Dels=0.00;FS=11.430;HaplotypeScore=14.3901;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.324;QD=1.56;ReadPosRankSum=5.296;SB=-8.105e+02	GT:AD:DP:GQ:PL	1/1:14,77:91:4:172,4,0
chrXI	24333	.	G	T	165.19	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=4.021;DP=91;Dels=0.00;FS=9.189;HaplotypeScore=14.3901;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.698;QD=1.82;ReadPosRankSum=5.212;SB=-8.632e+02	GT:AD:DP:GQ:PL	1/1:13,78:91:8:197,8,0
chrXI	24349	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.42;MQ0=0;QD=11.92;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1130,117,0
chrXI	24357	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;QD=12.60;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1167,126,0
chrXI	24373	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=98;Dels=0.00;FS=5.410;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=32.76;MQ0=0;MQRankSum=0.928;QD=11.10;ReadPosRankSum=2.928;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:3,95:98:99:1121,123,0
chrXI	24425	.	T	C	1391	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=81.4648;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=15.46;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1424,153,0
chrXI	24438	.	T	C	66.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.694;HaplotypeScore=92.5736;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;MQRankSum=-0.757;QD=0.65;ReadPosRankSum=1.698;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:12:99,12,0
chrXI	24444	.	G	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=93.2417;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=15.73;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1748,186,0
chrXI	24924	.	T	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.59;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1609,180,0
chrXI	25154	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=14.70;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1121,117,0
chrXI	25337	.	C	T	1061	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.65;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1094,117,0
chrXI	25349	.	A	G	925	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=6.946;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.337;QD=16.82;ReadPosRankSum=2.360;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:99:958,108,0
chrXI	25386	.	G	A	867	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=16.67;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:900,99,0
chrXI	25508	.	T	C	942	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=15.19;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:975,105,0
chrXI	25610	.	T	G	1146	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.46;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1179,132,0
chrXI	26043	.	T	C	2194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.530;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.521;QD=21.30;ReadPosRankSum=1.665;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2227,246,0
chrXI	26078	.	C	T	2510	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.82;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2543,273,0
chrXI	26422	.	A	G	2262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.421;QD=20.38;ReadPosRankSum=1.701;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2295,255,0
chrXI	26450	.	T	G	2136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=5.242;HaplotypeScore=7.4225;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.275;QD=19.78;ReadPosRankSum=1.635;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2169,240,0
chrXI	26672	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=22.16;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1540,171,0
chrXI	26709	.	C	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.92;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1414,150,0
chrXI	26730	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.55;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1174,132,0
chrXI	26749	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=15.90;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1194,138,0
chrXI	26810	.	A	T	739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=-0.313;QD=15.08;ReadPosRankSum=1.606;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:3,46:49:87:772,87,0
chrXI	27643	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.75;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1193,129,0
chrXI	28033	.	T	C	1850	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.02;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1883,210,0
chrXI	28267	.	T	C	783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=21.75;ReadPosRankSum=1.540;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:90:816,90,0
chrXI	28300	.	G	C	882	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.51;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:915,99,0
chrXI	28372	.	A	T	1730	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.10;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1763,189,0
chrXI	28396	.	C	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=19.26;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2017,213,0
chrXI	28399	.	G	A	1935	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.16;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1968,204,0
chrXI	28487	.	G	A	2381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.8709;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.699;QD=21.65;ReadPosRankSum=1.373;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:1,107:110:99:2414,239,0
chrXI	28551	.	A	G	2177	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.92;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2210,246,0
chrXI	29485	.	G	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.81;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1265,138,0
chrXI	29650	.	A	G	1021	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.56;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1054,117,0
chrXI	29680	.	G	A	1477	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.96;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1510,162,0
chrXI	29889	.	A	G	1063	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1096,123,0
chrXI	29986	.	A	G	948	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.35;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:981,105,0
chrXI	30016	.	A	G	676	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.22;MQ0=0;QD=13.80;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:78:709,78,0
chrXI	30025	.	C	T	691	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=13.29;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:75:724,75,0
chrXI	30028	.	C	T	695	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=12.64;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:78:728,78,0
chrXI	30052	.	C	T	941	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=14.48;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:974,102,0
chrXI	30359	.	A	G	1897	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.86;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1930,219,0
chrXI	30716	.	T	G	3188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.1902;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.449;QD=23.44;ReadPosRankSum=1.681;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:1,134:136:99:3221,351,0
chrXI	30923	.	A	C	1854	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4866;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.61;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1887,204,0
chrXI	31042	.	G	A	4179.01	PASS	AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=13.5018;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.48;SB=-1.813e+03	GT:AD:DP:GQ:PL	1/1:0,178:178:99:4179,447,0
chrXI	31094	.	G	A	1992	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.54;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2025,222,0
chrXI	31185	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=15.1058;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.19;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1204,132,0
chrXI	31220	.	G	T	1183	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.14;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1216,129,0
chrXI	31754	.	T	C	1623	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.87;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1656,180,0
chrXI	32054	.	C	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6930;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.10;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1904,201,0
chrXI	32204	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=17.54;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1471,165,0
chrXI	32212	.	G	A	1665	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=20.30;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1698,183,0
chrXI	32644	.	T	C	2357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.1824;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.973;QD=22.24;ReadPosRankSum=1.699;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2390,261,0
chrXI	32862	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.09;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1245,141,0
chrXI	32956	.	C	T	1292	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.72;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1325,141,0
chrXI	33219	.	C	G	1792	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.97;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1825,198,0
chrXI	33673	.	G	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.86;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1701,186,0
chrXI	33790	.	G	A	1272	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.19;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1305,138,0
chrXI	35385	.	A	C	1372	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.82;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1405,153,0
chrXI	37524	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-1.322;QD=17.55;ReadPosRankSum=1.094;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1367,132,0
chrXI	37530	.	G	A	1273	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=16.32;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1306,147,0
chrXI	37551	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=15.17;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1201,132,0
chrXI	37566	.	G	A	924	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=12.49;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:957,105,0
chrXI	37590	.	C	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.86;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1103,117,0
chrXI	37740	.	T	G	1466	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.21;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1499,165,0
chrXI	37956	.	G	A	1556	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=21.61;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1589,168,0
chrXI	37995	.	G	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=18.83;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1257,132,0
chrXI	37998	.	G	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=17.86;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1194,126,0
chrXI	38007	.	T	C	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.210;QD=17.77;ReadPosRankSum=1.627;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1206,135,0
chrXI	38034	.	G	A	1175	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=17.03;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1208,132,0
chrXI	38261	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.345;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=-0.385;QD=20.50;ReadPosRankSum=1.668;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1140,126,0
chrXI	38472	.	A	G	1602	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.81;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1635,180,0
chrXI	38813	.	G	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.35;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1702,183,0
chrXI	39127	.	G	C	2002	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.49;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2035,225,0
chrXI	39160	.	G	T	2242	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.20;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2275,243,0
chrXI	39184	.	C	G	2168	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.90;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2201,255,0
chrXI	39899	.	A	T	1033	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.25;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1066,114,0
chrXI	40023	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.96;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1504,159,0
chrXI	40080	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=21.06;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1023,114,0
chrXI	40092	.	G	T	978	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.73;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1011,108,0
chrXI	40103	.	T	C	920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=47;Dels=0.00;FS=2.898;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=1.104;QD=19.57;ReadPosRankSum=2.343;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:99:953,108,0
chrXI	40164	.	G	A	593	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=16.03;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:69:626,69,0
chrXI	40206	.	C	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.05;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,52:56:99:1044,114,0
chrXI	40356	.	A	T	1881	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.51;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1914,204,0
chrXI	40479	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.547;QD=20.32;ReadPosRankSum=1.687;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1577,177,0
chrXI	40860	.	T	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.57;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1207,129,0
chrXI	40941	.	A	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.37;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1144,129,0
chrXI	40977	.	C	T	1385	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=19.51;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1418,147,0
chrXI	40989	.	T	C	1072	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=15.76;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1105,123,0
chrXI	40998	.	C	G	1035	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=15.92;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1068,123,0
chrXI	41115	.	C	A	1040	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.22;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1073,117,0
chrXI	41369	.	G	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.16;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1673,177,0
chrXI	41442	.	C	T	1800	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6522;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.43;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1833,198,0
chrXI	41490	.	G	A	1898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.449;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-0.977;QD=24.33;ReadPosRankSum=-1.466;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1931,207,0
chrXI	41527	.	G	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.47;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1450,153,0
chrXI	41535	.	G	A	1402	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.32;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1435,153,0
chrXI	41601	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=18.93;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1680,177,0
chrXI	42021	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.793;QD=19.68;ReadPosRankSum=1.674;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1194,129,0
chrXI	42093	.	A	G	693	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:81:726,81,0
chrXI	42198	.	A	T	1714	filter	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.70;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1747,186,0
chrXI	42210	.	A	G	1528	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.22;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1561,171,0
chrXI	42269	.	T	A	519	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.97;SB=-6.527e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:60:552,60,0
chrXI	42424	.	T	C	1133	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.522;QD=23.60;ReadPosRankSum=2.348;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,46:48:99:1166,129,0
chrXI	42450	.	G	A	1097	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=24.93;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1130,114,0
chrXI	42555	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.32;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,36:40:99:886,102,0
chrXI	42588	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-0.953;QD=23.57;ReadPosRankSum=1.646;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:1,39:40:99:976,108,0
chrXI	42738	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.06;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:886,99,0
chrXI	42757	.	C	G	897	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.92;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:930,102,0
chrXI	42807	.	A	G	1222	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=16.51;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1255,144,0
chrXI	42834	.	A	G	1454	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=15.47;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1487,168,0
chrXI	42835	.	T	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=15.99;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1536,168,0
chrXI	43005	.	C	T	1840	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.29;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1873,201,0
chrXI	43195	.	C	T	1989	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.51;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2022,210,0
chrXI	43241	.	G	T	2365	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.31;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2398,264,0
chrXI	43368	.	G	A	1628	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.61;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1661,186,0
chrXI	43451	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.735;QD=19.41;ReadPosRankSum=1.680;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1314,150,0
chrXI	43498	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.924;QD=21.53;ReadPosRankSum=1.675;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1325,147,0
chrXI	43629	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.74;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1903,204,0
chrXI	43668	.	A	T	2125	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=16.2924;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.160;QD=20.63;ReadPosRankSum=1.631;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2158,234,0
chrXI	44246	.	T	C	1656	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.417;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.4704;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.899;QD=20.96;ReadPosRankSum=-1.644;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1689,186,0
chrXI	44293	.	C	T	1475	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.152;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=15.3224;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.663;QD=16.57;ReadPosRankSum=1.617;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1508,116,0
chrXI	44298	.	G	A	1616	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.9588;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.57;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1649,180,0
chrXI	44334	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.97;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1596,171,0
chrXI	44336	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.782;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=0.161;QD=17.79;ReadPosRankSum=1.692;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1563,171,0
chrXI	44440	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.67;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1733,183,0
chrXI	44573	.	A	G	1234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.363;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.316;QD=16.24;ReadPosRankSum=1.686;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1267,138,0
chrXI	45141	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.58;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1247,135,0
chrXI	45213	.	A	G	1167	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.52;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1200,135,0
chrXI	45217	.	G	T	1250	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.94;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1283,135,0
chrXI	45238	.	G	A	1271	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.97;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1304,135,0
chrXI	45375	.	T	C	2511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.219;QD=21.10;ReadPosRankSum=2.408;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:2,116:119:99:2544,279,0
chrXI	45525	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.221;QD=22.93;ReadPosRankSum=1.675;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1432,162,0
chrXI	45578	.	T	G	1618	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=23.79;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1651,180,0
chrXI	45765	.	A	G	2330	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.98;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2363,255,0
chrXI	46074	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=17.19;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1357,144,0
chrXI	46101	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4883;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.90;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1483,162,0
chrXI	46134	.	T	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.76;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:1702,189,0
chrXI	46275	.	C	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=21.65;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1700,180,0
chrXI	46282	.	C	T	1753	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=23.07;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1786,192,0
chrXI	46444	.	C	T	695	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.37;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,39:40:81:728,81,0
chrXI	46461	.	T	G	619	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=18.76;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,32:33:72:652,72,0
chrXI	46587	.	A	C	973	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.067;QD=18.71;ReadPosRankSum=1.599;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1006,117,0
chrXI	46608	.	C	T	963	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=17.51;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,54:55:99:996,111,0
chrXI	46631	.	T	G	809	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.59;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:90:842,90,0
chrXI	46715	.	A	T	52.97	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=5.89;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:85,9,0
chrXI	46718	.	G	A	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=2.52;SB=-1.740e+00	GT:AD:DP:GQ:PL	1/1:0,11:11:6:59,6,0
chrXI	46843	.	C	T	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=4.46;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,4:4:6:49,6,0
chrXI	46912	.	G	A	435	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=16.73;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:48:468,48,0
chrXI	46995	.	A	G	621	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.88;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:72:654,72,0
chrXI	47023	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=24.50;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1111,120,0
chrXI	47201	.	T	C	1312	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.43;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1345,147,0
chrXI	47225	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=23.05;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1301,135,0
chrXI	47231	.	A	C	1021	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.752;DP=54;Dels=0.00;FS=2.653;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;MQRankSum=-0.135;QD=18.91;ReadPosRankSum=1.405;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:3,50:53:99:1054,101,0
chrXI	47241	.	A	G	1067	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=20.52;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1100,123,0
chrXI	47357	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.58;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1824,198,0
chrXI	47435	.	A	T	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8990;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.577;QD=19.72;ReadPosRankSum=1.681;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1394,153,0
chrXI	47481	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.75;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1361,147,0
chrXI	47531	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.93;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1408,150,0
chrXI	47705	.	T	C	2328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.620;QD=21.16;ReadPosRankSum=1.700;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,108:110:99:2361,264,0
chrXI	47837	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.12;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1575,168,0
chrXI	48319	.	A	G	1624	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.09;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1657,180,0
chrXI	48391	.	G	T	980	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.00;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1013,105,0
chrXI	48477	.	A	G	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.162;QD=20.73;ReadPosRankSum=1.691;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1816,198,0
chrXI	48522	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=16.55;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1771,186,0
chrXI	48601	.	G	A	2127	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=11.8098;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.43;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,118:122:99:2160,246,0
chrXI	48808	.	C	T	1190	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.29;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1223,129,0
chrXI	49819	.	C	T	1144	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8957;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=-1.260;QD=17.33;ReadPosRankSum=1.627;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1177,123,0
chrXI	49843	.	C	T	1208	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.17;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1241,129,0
chrXI	50257	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1520,159,0
chrXI	50395	.	T	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1261,144,0
chrXI	50810	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.76;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2063,213,0
chrXI	51299	.	C	T	1936	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1726;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.78;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1969,204,0
chrXI	51331	.	A	G	2112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=101;Dels=0.00;FS=4.906;HaplotypeScore=17.8000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=3.187;QD=20.91;ReadPosRankSum=3.043;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:4,94:101:99:2145,231,0
chrXI	51512	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1542,168,0
chrXI	51558	.	C	T	2061	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.97;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2094,216,0
chrXI	52588	.	T	C	1788	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1821,201,0
chrXI	52628	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.08;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1718,180,0
chrXI	53112	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.56;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1187,132,0
chrXI	53379	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=15.70;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:57:99:928,105,0
chrXI	56302	.	C	T	2360	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2393,252,0
chrXI	56817	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.316;QD=21.35;ReadPosRankSum=1.686;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1634,180,0
chrXI	57957	.	G	C	2391	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.99;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2424,261,0
chrXI	58110	.	A	G	1046	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.3995;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.92;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1079,117,0
chrXI	58239	.	G	A	2308	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.98;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2341,252,0
chrXI	58428	.	A	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.83;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1533,168,0
chrXI	58464	.	A	G	1248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.444;QD=20.80;ReadPosRankSum=1.675;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1281,144,0
chrXI	58969	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.31;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1069,117,0
chrXI	59004	.	T	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=20.98;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1166,123,0
chrXI	59029	.	T	C	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=60;Dels=0.00;FS=6.006;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-1.018;QD=19.42;ReadPosRankSum=2.883;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:3,57:60:99:1198,129,0
chrXI	60173	.	G	A	2485	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.99;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2518,261,0
chrXI	62576	.	C	T	4645.01	PASS	AC=2;AF=1.00;AN=2;DP=208;Dels=0.00;FS=0.000;HaplotypeScore=15.9752;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.33;SB=-2.051e+03	GT:AD:DP:GQ:PL	1/1:0,208:208:99:4645,501,0
chrXI	62759	.	T	C	1756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=85;Dels=0.00;FS=6.620;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.638;QD=20.66;ReadPosRankSum=2.391;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:2,82:85:99:1789,192,0
chrXI	64345	.	T	G	2354	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.39;SB=-1.460e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2387,276,0
chrXI	66233	.	A	T	927	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=17.49;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:960,102,0
chrXI	66285	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.73;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1197,129,0
chrXI	66342	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.2200;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.78;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1299,141,0
chrXI	66546	.	A	G	723	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.66;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:756,84,0
chrXI	66663	.	A	G	1037	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.57;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1070,117,0
chrXI	66681	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.16;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1144,126,0
chrXI	66804	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.09;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1657,174,0
chrXI	67641	.	T	C	1103	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.43;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1136,132,0
chrXI	67691	.	A	C	446	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=15.38;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:54:479,54,0
chrXI	67844	.	G	A	226	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=14.13;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:30:259,30,0
chrXI	67862	.	C	G	279	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.26;MQ0=0;QD=16.41;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:36:312,36,0
chrXI	67872	.	C	G	303	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=18.94;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,16:16:36:336,36,0
chrXI	67884	.	A	G	203.01	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.35;MQ0=0;QD=13.53;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:27:236,27,0
chrXI	67934	.	T	C	329	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;QD=14.30;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:39:362,39,0
chrXI	67955	.	G	A	269	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=12.81;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,20:21:33:302,33,0
chrXI	67993	.	T	C	364	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=21.41;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:45:397,45,0
chrXI	67997	.	T	A	392	SnpCluster	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=24.50;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:45:425,45,0
chrXI	67998	.	C	T	383	SnpCluster	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=23.94;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:45:416,45,0
chrXI	68014	.	C	T	276	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;QD=23.00;SB=-8.498e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:33:309,33,0
chrXI	68117	.	G	A	51.97	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=1.79;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,26:28:9:84,9,0
chrXI	68137	.	T	A	510	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.76;MQ0=0;MQRankSum=-1.379;QD=10.20;ReadPosRankSum=1.662;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:2,48:50:60:543,60,0
chrXI	68162	.	A	G	673	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=11.22;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:81:706,81,0
chrXI	68168	.	A	T	730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=36.41;MQ0=0;MQRankSum=-0.892;QD=11.06;ReadPosRankSum=0.892;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:84:763,84,0
chrXI	68184	.	C	T	934	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=12.62;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:967,102,0
chrXI	68250	.	T	C	1350	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.3341;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.77;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1383,150,0
chrXI	68298	.	C	T	526	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=16.97;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:60:559,60,0
chrXI	68337	.	G	A	112.26	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.39;MQ0=0;QD=5.35;SB=-5.727e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:15:145,15,0
chrXI	68377	.	G	A	76.51	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=13.1755;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=2.73;SB=-1.045e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:12:109,12,0
chrXI	68447	.	A	G	570	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=30.7343;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=16.76;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:603,66,0
chrXI	68563	.	T	C	1541	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=18.79;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1574,177,0
chrXI	68580	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=82;Dels=0.00;FS=3.900;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=0.492;QD=17.35;ReadPosRankSum=0.449;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1456,144,0
chrXI	68691	.	A	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.22;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1347,147,0
chrXI	68753	.	T	G	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;DP=33;Dels=0.00;FS=20.720;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=50.96;MQ0=0;MQRankSum=1.195;QD=1.12;ReadPosRankSum=-2.735;SB=-6.506e-03	GT:AD:DP:GQ:PL	0/1:20,12:33:67:67,0,149
chrXI	68802	.	G	A	465	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=11.07;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:498,54,0
chrXI	68824	.	T	C	638	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=15.95;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,38:40:75:671,75,0
chrXI	68859	.	G	A	979	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.83;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1012,108,0
chrXI	68934	.	G	A	1505	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.20;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1538,165,0
chrXI	68969	.	T	C	1612	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.67;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1645,186,0
chrXI	68994	.	C	G	1237	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.74;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1270,147,0
chrXI	70228	.	T	C	960	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=16.00;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:993,111,0
chrXI	70579	.	A	C	658	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.93;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:75:691,75,0
chrXI	70692	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.34;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1271,132,0
chrXI	71068	.	T	C	1017	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.34;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1050,114,0
chrXI	72614	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.99;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1305,150,0
chrXI	73365	.	T	A	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=19.64;ReadPosRankSum=1.686;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1506,168,0
chrXI	73999	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.36;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2068,228,0
chrXI	74052	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3524;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=15.49;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1319,147,0
chrXI	74084	.	G	T	32.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;DP=46;Dels=0.00;FS=21.754;HaplotypeScore=36.0370;MLEAC=1;MLEAF=0.500;MQ=38.11;MQ0=0;MQRankSum=2.710;QD=0.70;ReadPosRankSum=-2.767;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,9:46:62:62,0,260
chrXI	74086	.	C	T	248	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=31.47;MQ0=0;MQRankSum=-0.047;QD=6.70;ReadPosRankSum=-1.264;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:30:281,30,0
chrXI	74090	.	G	C	244	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.97;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:30:277,30,0
chrXI	74091	.	C	T	256	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=3.136;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.248;QD=7.31;ReadPosRankSum=0.050;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:30:289,30,0
chrXI	74093	.	G	A	270	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.6927;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.71;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:33:303,33,0
chrXI	74103	.	C	A	307	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.83;MQ0=0;QD=8.77;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:36:340,36,0
chrXI	74157	.	T	C	735	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.85;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:768,87,0
chrXI	74163	.	C	T	789	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.24;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:822,93,0
chrXI	74223	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=4.111;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=1.422;QD=20.41;ReadPosRankSum=1.629;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1421,156,0
chrXI	74375	.	C	G	2395	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.48;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2428,264,0
chrXI	74502	.	A	C	1389	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=17.81;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1422,159,0
chrXI	74535	.	T	A	1497	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=16.27;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1530,165,0
chrXI	74537	.	T	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=15.38;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1448,159,0
chrXI	74561	.	G	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=16.27;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1660,174,0
chrXI	74599	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.162;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;MQRankSum=-0.451;QD=19.78;ReadPosRankSum=1.685;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1497,162,0
chrXI	74603	.	A	C	1414	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=19.11;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1447,156,0
chrXI	74756	.	C	T	2693	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=18.5125;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.07;SB=-1.361e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2726,285,0
chrXI	74810	.	A	G	2738	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.352;DP=135;Dels=0.00;FS=9.135;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.684;QD=20.28;ReadPosRankSum=3.392;SB=-1.546e+03	GT:AD:DP:GQ:PL	1/1:4,128:135:99:2771,309,0
chrXI	74922	.	G	A	59.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.780;DP=77;Dels=0.00;FS=1.262;HaplotypeScore=111.8346;MLEAC=1;MLEAF=0.500;MQ=53.36;MQ0=0;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-4.920;SB=-6.801e+01	GT:AD:DP:GQ:PL	0/1:61,16:77:89:89,0,109
chrXI	74941	.	G	A	1127	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.18;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1160,126,0
chrXI	75013	.	G	A	1915	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.28;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1948,216,0
chrXI	76124	.	A	G	1245	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.10;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1278,144,0
chrXI	76522	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1237,141,0
chrXI	76804	.	C	T	2502	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=17.6416;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.20;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,114:118:99:2535,270,0
chrXI	76914	.	T	C	2526	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3073;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.52;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2559,282,0
chrXI	77001	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=0.866;QD=18.62;ReadPosRankSum=1.646;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:1,79:82:99:1560,168,0
chrXI	77002	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.49;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1568,168,0
chrXI	77172	.	C	T	2510	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.61;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2543,273,0
chrXI	77212	.	A	T	2053	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.3319;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.74;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2086,228,0
chrXI	77517	.	A	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.55;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1304,144,0
chrXI	78125	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.34;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:99:1130,123,0
chrXI	78341	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.45;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1320,138,0
chrXI	78422	.	A	G	1444	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=65;Dels=0.00;FS=9.149;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.197;QD=22.22;ReadPosRankSum=2.374;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1477,162,0
chrXI	78581	.	A	G	579	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.09;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:66:612,66,0
chrXI	78639	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.80;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:990,111,0
chrXI	78708	.	A	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.88;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1166,126,0
chrXI	79142	.	T	G	865	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.260;QD=21.62;ReadPosRankSum=1.646;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:99:898,99,0
chrXI	79181	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.80;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1559,171,0
chrXI	79688	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.72;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1587,171,0
chrXI	79729	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.80;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1485,156,0
chrXI	80353	.	T	C	1448	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=25.86;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1481,162,0
chrXI	80751	.	C	A	2644	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.67;SB=-1.427e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2677,291,0
chrXI	80805	.	G	A	2697	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.47;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2730,297,0
chrXI	80848	.	T	C	2008	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.1869;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.25;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2041,225,0
chrXI	80854	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=16.72;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1722,195,0
chrXI	81244	.	T	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=16.11;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1161,129,0
chrXI	81400	.	A	C	832	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.98;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:96:865,96,0
chrXI	81406	.	T	C	781	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=16.27;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:814,93,0
chrXI	81518	.	T	C	811	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=20.79;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:90:844,90,0
chrXI	81532	.	T	C	1040	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.62;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1073,120,0
chrXI	81670	.	T	C	1605	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.40;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1638,180,0
chrXI	81688	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.48;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1719,183,0
chrXI	81709	.	T	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.24;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1137,123,0
chrXI	81718	.	A	G	927	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=14.48;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:960,108,0
chrXI	81758	.	A	G	794	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=6.705;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.968;QD=13.23;ReadPosRankSum=2.368;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:96:827,96,0
chrXI	81838	.	T	C	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9315;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.680;QD=20.48;ReadPosRankSum=0.525;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1405,153,0
chrXI	81865	.	T	C	1453	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.69;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1486,162,0
chrXI	81964	.	C	T	1625	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.06;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1658,186,0
chrXI	81976	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.29;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1636,180,0
chrXI	82000	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=18.87;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1580,168,0
chrXI	82057	.	A	G	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.148;QD=20.12;ReadPosRankSum=1.654;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1844,198,0
chrXI	82288	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.20;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1427,162,0
chrXI	82441	.	C	T	901	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=17.00;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:934,102,0
chrXI	82621	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.57;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1444,153,0
chrXI	82791	.	G	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.28;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1441,156,0
chrXI	83076	.	T	C	2390	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.93;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2423,279,0
chrXI	83549	.	A	G	1626	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.7212;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.07;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1659,183,0
chrXI	83733	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.142;DP=79;Dels=0.00;FS=20.747;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=41.23;MQ0=0;MQRankSum=-1.867;QD=16.57;ReadPosRankSum=3.343;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:4,75:79:99:1342,139,0
chrXI	83745	.	T	G	1005	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=16.75;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1038,123,0
chrXI	83746	.	G	A	1036	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=17.27;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1069,123,0
chrXI	83753	.	A	G	934	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.54;MQ0=0;QD=16.39;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:967,111,0
chrXI	83760	.	A	G	768	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=14.49;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:96:801,96,0
chrXI	83792	.	C	G	190.03	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.46;MQ0=0;QD=10.00;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:24:223,24,0
chrXI	83795	.	C	T	191.03	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.05;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=9.10;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:24:224,24,0
chrXI	83830	.	T	C	602	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;QD=15.44;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:635,69,0
chrXI	83853	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;QD=18.46;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1307,147,0
chrXI	83889	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.69;MQ0=0;QD=19.51;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1711,186,0
chrXI	83901	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=21.39;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1851,195,0
chrXI	84009	.	C	T	2375	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.0855;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=20.47;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2408,270,0
chrXI	84020	.	T	C	1685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.147;HaplotypeScore=3.7195;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;MQRankSum=-1.339;QD=17.37;ReadPosRankSum=1.696;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1718,201,0
chrXI	84029	.	C	A	1494	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=0;QD=16.60;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1527,180,0
chrXI	84057	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=16.14;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1340,156,0
chrXI	84078	.	T	C	792	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=14.94;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:825,96,0
chrXI	84086	.	G	T	776	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=17.64;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:809,90,0
chrXI	84139	.	A	G	372	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=11.27;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:45:405,45,0
chrXI	84151	.	C	T	337	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=10.53;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:39:370,39,0
chrXI	84163	.	C	T	356	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=10.47;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:42:389,42,0
chrXI	84166	.	G	T	398	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=11.37;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:45:431,45,0
chrXI	84171	.	C	G	355	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=9.86;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:42:388,42,0
chrXI	84180	.	G	C	365	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.10;MQ0=0;QD=10.43;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:45:398,45,0
chrXI	84187	.	T	C	436	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=11.18;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:51:469,51,0
chrXI	84259	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=20.16;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1283,141,0
chrXI	84308	.	A	T	675	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.22;MQ0=0;QD=9.51;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:81:708,81,0
chrXI	84319	.	T	C	839	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.11;MQ0=0;QD=12.34;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:872,99,0
chrXI	84335	.	C	T	956	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=12.75;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:989,105,0
chrXI	84350	.	G	A	1158	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=42.76;MQ0=0;QD=13.79;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1191,126,0
chrXI	84421	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.96;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:54:99:1219,129,0
chrXI	84589	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=21.79;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1580,165,0
chrXI	84611	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.28;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1395,153,0
chrXI	84689	.	G	A	1779	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=22.52;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1812,195,0
chrXI	85003	.	T	C	1731	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.41;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1764,195,0
chrXI	85027	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6800;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.273;QD=17.29;ReadPosRankSum=1.696;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:1,94:97:99:1710,189,0
chrXI	85423	.	T	A	2703	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=23.71;SB=-1.513e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2736,294,0
chrXI	85435	.	C	T	2555	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.2374;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.41;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2588,279,0
chrXI	85468	.	C	G	2062	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.48;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2095,237,0
chrXI	85522	.	C	T	2127	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.3776;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.32;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2160,228,0
chrXI	85567	.	T	C	2057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.224;QD=24.20;ReadPosRankSum=1.691;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2090,228,0
chrXI	85801	.	T	C	861	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.57;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:894,99,0
chrXI	85821	.	T	C	946	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=16.60;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:979,105,0
chrXI	85837	.	T	G	1074	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=17.32;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1107,123,0
chrXI	86206	.	C	T	2341	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.73;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2374,249,0
chrXI	86234	.	C	T	2608	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1007;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.60;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2641,279,0
chrXI	86327	.	T	C	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.582;QD=22.07;ReadPosRankSum=1.657;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1048,114,0
chrXI	86346	.	G	A	911	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.70;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:944,99,0
chrXI	86546	.	A	G	1668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=82;Dels=0.00;FS=5.901;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.494;QD=20.34;ReadPosRankSum=2.914;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:3,79:82:99:1701,192,0
chrXI	91751	.	T	C	1001	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.63;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1034,114,0
chrXI	92069	.	G	A	622	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=15.95;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:75:655,75,0
chrXI	92072	.	A	G	684	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=18.00;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:717,81,0
chrXI	92122	.	C	A	651	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.60;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:75:684,75,0
chrXI	92158	.	C	T	756	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.89;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:789,84,0
chrXI	92210	.	A	G	677	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=11.67;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:78:710,78,0
chrXI	92251	.	G	T	410	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=8.04;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:48:443,48,0
chrXI	92252	.	T	A	401	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=7.86;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:48:434,48,0
chrXI	92272	.	C	A	30.77	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=30.9856;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=0.64;SB=-3.058e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:6:62,6,0
chrXI	92284	.	A	G	261	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.02;FS=0.000;HaplotypeScore=14.8727;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=6.37;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:33:294,33,0
chrXI	92313	.	T	C	527	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.44;MQ0=0;QD=14.64;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:63:560,63,0
chrXI	92330	.	G	T	637	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=17.22;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:670,72,0
chrXI	92358	.	A	G	733	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=17.05;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:766,87,0
chrXI	92395	.	T	C	467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;MQRankSum=-1.083;QD=14.59;ReadPosRankSum=1.625;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:54:500,54,0
chrXI	92422	.	C	T	560	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=15.56;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:63:593,63,0
chrXI	92424	.	C	T	553	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.49;MQ0=0;QD=15.36;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:63:586,63,0
chrXI	92435	.	C	T	420	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.13;MQ0=0;QD=12.73;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:48:453,48,0
chrXI	92441	.	G	T	447	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=0;QD=14.42;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:51:480,51,0
chrXI	92449	.	A	T	353	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;QD=12.17;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:42:386,42,0
chrXI	92500	.	T	G	286	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=14.30;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:36:319,36,0
chrXI	92507	.	G	T	324	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=14.73;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:39:357,39,0
chrXI	92653	.	G	A	842	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=45.2344;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=15.04;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:875,99,0
chrXI	92948	.	A	T	1264	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.57;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1297,141,0
chrXI	93041	.	G	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.30;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1259,138,0
chrXI	93266	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=17.66;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1269,144,0
chrXI	93302	.	T	G	1808	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.44;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1841,198,0
chrXI	93349	.	G	T	1521	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.12;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1554,165,0
chrXI	93445	.	C	T	1033	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=15.65;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1066,117,0
chrXI	93468	.	C	G	919	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=15.84;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:952,108,0
chrXI	93510	.	A	T	1432	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=21.37;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1465,153,0
chrXI	93529	.	C	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.27;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1459,159,0
chrXI	93562	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.94;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1409,156,0
chrXI	93637	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.2006;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.21;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:66:99:1301,141,0
chrXI	93800	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.05;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1124,120,0
chrXI	93827	.	A	C	648	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=10.29;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:75:681,75,0
chrXI	93828	.	T	C	650	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;QD=10.32;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:75:683,75,0
chrXI	93852	.	A	G	314	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=6.04;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:39:347,39,0
chrXI	93854	.	C	T	313	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=6.02;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:39:346,39,0
chrXI	98452	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.25;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1341,141,0
chrXI	100670	.	T	C	1344	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1377,150,0
chrXI	106522	.	C	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1672,174,0
chrXI	110832	.	G	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.45;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1406,150,0
chrXI	112742	.	G	C	1291	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=19.27;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1324,150,0
chrXI	112744	.	G	A	1325	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.38;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1358,144,0
chrXI	113034	.	C	T	1993	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.65;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2026,219,0
chrXI	113078	.	C	A	1683	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.70;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1716,177,0
chrXI	113110	.	C	A	1407	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.00;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1440,159,0
chrXI	113142	.	A	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.67;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1548,165,0
chrXI	113529	.	T	G	2093	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.00;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2126,237,0
chrXI	113884	.	G	A	2172	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.35;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2205,243,0
chrXI	113998	.	C	T	2122	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.82;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,87:93:99:2155,231,0
chrXI	114199	.	A	G	2082	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.69;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2115,228,0
chrXI	114400	.	C	T	2616	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.57;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2649,282,0
chrXI	114904	.	C	T	711	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=25.39;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:81:744,81,0
chrXI	114933	.	A	G	769	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=22.62;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:87:802,87,0
chrXI	115238	.	C	T	1783	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.42;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1816,192,0
chrXI	115293	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.42;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1318,147,0
chrXI	115499	.	A	G	1984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.02;MQ0=0;MQRankSum=0.230;QD=23.90;ReadPosRankSum=1.690;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2017,231,0
chrXI	115557	.	G	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.04;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1620,174,0
chrXI	115612	.	C	G	1489	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.97;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:99:1522,165,0
chrXI	115636	.	T	C	1217	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=23.86;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1250,138,0
chrXI	115680	.	G	A	812	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.20;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:90:845,90,0
chrXI	115797	.	A	G	2084	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=103;Dels=0.00;FS=8.649;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.664;QD=20.23;ReadPosRankSum=2.401;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:2,100:103:99:2117,246,0
chrXI	115863	.	A	G	1402	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.91;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1435,162,0
chrXI	115888	.	C	G	1205	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.31;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1238,135,0
chrXI	115962	.	T	C	1878	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.59;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1911,207,0
chrXI	115995	.	G	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.86;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1894,198,0
chrXI	116424	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.44;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1102,117,0
chrXI	116504	.	G	A	1866	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.28;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,89:92:99:1899,201,0
chrXI	116583	.	T	C	2043	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.21;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2076,231,0
chrXI	116904	.	C	T	1775	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.88;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1808,198,0
chrXI	117198	.	A	G	2130	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.09;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2163,243,0
chrXI	117695	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.92;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1587,174,0
chrXI	119238	.	G	A	1544	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.59;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1577,165,0
chrXI	119264	.	T	A	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=3.554;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.427;QD=19.93;ReadPosRankSum=1.681;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1428,156,0
chrXI	119339	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1379,153,0
chrXI	119501	.	G	A	1277	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=18.51;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1310,147,0
chrXI	119539	.	C	T	1015	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=17.50;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1048,111,0
chrXI	120088	.	A	G	2017	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.30;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2050,222,0
chrXI	120175	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.66;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1414,153,0
chrXI	120563	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.85;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1322,144,0
chrXI	120740	.	A	G	1979	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.40;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2012,228,0
chrXI	123302	.	A	C	2588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.701;QD=22.12;ReadPosRankSum=1.638;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:1,110:117:99:2621,285,0
chrXI	123413	.	G	C	2320	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.75;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2353,255,0
chrXI	124802	.	A	T	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.735;QD=23.00;ReadPosRankSum=1.680;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1574,171,0
chrXI	125293	.	G	C	1804	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.9023;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.27;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1837,201,0
chrXI	125651	.	T	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.2120;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.59;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1717,180,0
chrXI	126748	.	A	G	2231	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.7431;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.99;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2264,246,0
chrXI	127156	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=0.279;QD=19.16;ReadPosRankSum=1.676;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1221,135,0
chrXI	127173	.	C	T	1121	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.38;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1154,120,0
chrXI	127196	.	G	A	696	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=14.50;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:78:729,78,0
chrXI	127431	.	C	T	1275	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.90;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1308,138,0
chrXI	127793	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.091;QD=19.53;ReadPosRankSum=1.641;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1517,171,0
chrXI	128095	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.8959;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.54;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1294,141,0
chrXI	128150	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.53;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1260,141,0
chrXI	128185	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.91;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1335,144,0
chrXI	128195	.	A	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=16.93;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1218,138,0
chrXI	128330	.	C	T	1302	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.59;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1335,144,0
chrXI	128646	.	C	T	1490	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.62;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1523,159,0
chrXI	135804	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.10;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1362,144,0
chrXI	135965	.	A	G	214.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.810;QD=14.27;ReadPosRankSum=1.504;SB=-2.602e+01	GT:AD:DP:GQ:PL	1/1:1,14:15:27:247,27,0
chrXI	140211	.	C	G	1723	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.01;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1756,195,0
chrXI	140833	.	T	G	1976	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.8210;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.675;QD=21.25;ReadPosRankSum=2.397;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2009,219,0
chrXI	141122	.	A	G	2355	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.43;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2388,264,0
chrXI	141184	.	G	A	4158.01	PASS	AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=9.7931;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.10;SB=-2.259e+03	GT:AD:DP:GQ:PL	1/1:0,179:180:99:4158,444,0
chrXI	141564	.	T	C	1691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=84;Dels=0.00;FS=9.648;HaplotypeScore=11.5830;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.922;QD=20.13;ReadPosRankSum=2.391;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1724,189,0
chrXI	141670	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=17.171;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.841;QD=24.03;ReadPosRankSum=2.379;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1691,180,0
chrXI	142268	.	A	T	973	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.46;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1006,111,0
chrXI	142379	.	A	G	67.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;DP=19;Dels=0.00;FS=9.863;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=37.71;MQ0=0;MQRankSum=0.124;QD=3.53;ReadPosRankSum=1.032;SB=-7.501e+01	GT:AD:DP:GQ:PL	0/1:8,11:19:97:97,0,139
chrXI	142382	.	A	T	188.03	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.189;DP=18;Dels=0.00;FS=7.186;HaplotypeScore=18.4216;MLEAC=2;MLEAF=1.00;MQ=31.53;MQ0=0;MQRankSum=1.323;QD=10.45;ReadPosRankSum=2.583;SB=-1.827e+01	GT:AD:DP:GQ:PL	1/1:3,14:18:24:221,24,0
chrXI	142388	.	T	A	132.17	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DP=11;Dels=0.00;FS=10.792;HaplotypeScore=10.2033;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.573;QD=12.02;ReadPosRankSum=2.054;SB=10.09	GT:AD:DP:GQ:PL	1/1:3,6:11:18:165,18,0
chrXI	142389	.	T	G	152.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.262;DP=11;Dels=0.00;FS=12.632;HaplotypeScore=10.2033;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.978;QD=13.82;ReadPosRankSum=1.377;SB=3.91	GT:AD:DP:GQ:PL	1/1:3,8:11:21:185,21,0
chrXI	142397	.	A	G	156.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=9.1466;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;MQRankSum=-0.764;QD=10.40;ReadPosRankSum=1.953;SB=-8.606e+01	GT:AD:DP:GQ:PL	1/1:2,13:15:21:189,21,0
chrXI	142409	.	A	G	127.13	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=6.69;SB=-1.351e+02	GT:AD:DP:GQ:PL	1/1:0,18:19:18:160,18,0
chrXI	142430	.	G	A	460	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=17.04;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:51:493,51,0
chrXI	142526	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.27;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1347,147,0
chrXI	143177	.	G	A	2544	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.02;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2577,276,0
chrXI	143668	.	C	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.95;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2030,216,0
chrXI	143713	.	C	T	2013	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.96;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:2046,213,0
chrXI	143731	.	A	T	1596	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.86;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1629,177,0
chrXI	143865	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=3.369;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.237;QD=19.34;ReadPosRankSum=1.677;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1271,138,0
chrXI	144069	.	A	G	1868	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=84;Dels=0.00;FS=10.728;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.134;QD=22.24;ReadPosRankSum=2.867;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:3,80:84:99:1901,210,0
chrXI	144571	.	T	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9768;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=17.19;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1391,153,0
chrXI	144700	.	C	T	748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.008;DP=71;Dels=0.00;FS=4.643;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;MQRankSum=0.957;QD=10.54;ReadPosRankSum=-1.629;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:84:781,84,0
chrXI	144718	.	T	C	302.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.165;DP=56;Dels=0.00;FS=19.391;HaplotypeScore=18.1072;MLEAC=1;MLEAF=0.500;MQ=41.16;MQ0=0;MQRankSum=1.709;QD=5.39;ReadPosRankSum=-3.605;SB=-1.410e+02	GT:AD:DP:GQ:PL	0/1:35,21:56:99:332,0,100
chrXI	144727	.	T	C	162.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.476;DP=60;Dels=0.02;FS=21.497;HaplotypeScore=25.7161;MLEAC=1;MLEAF=0.500;MQ=41.59;MQ0=0;MQRankSum=2.100;QD=2.70;ReadPosRankSum=3.004;SB=-1.445e+02	GT:AD:DP:GQ:PL	0/1:12,47:59:93:192,0,93
chrXI	144742	.	C	T	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;DP=59;Dels=0.00;FS=30.841;HaplotypeScore=8.3962;MLEAC=1;MLEAF=0.500;MQ=47.88;MQ0=0;MQRankSum=1.000;QD=0.78;ReadPosRankSum=-3.667;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:49,10:59:76:76,0,313
chrXI	144775	.	G	A	360.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.551;DP=111;Dels=0.00;FS=10.725;HaplotypeScore=16.1337;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=0;MQRankSum=0.631;QD=3.24;ReadPosRankSum=0.186;SB=-1.960e+02	GT:AD:DP:GQ:PL	0/1:79,32:111:99:390,0,958
chrXI	144829	.	G	A	18.07	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;DP=138;Dels=0.00;FS=1.876;HaplotypeScore=68.1913;MLEAC=1;MLEAF=0.500;MQ=50.38;MQ0=1;MQRankSum=2.180;QD=0.13;ReadPosRankSum=-1.316;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:115,23:138:48:48,0,1388
chrXI	144835	.	T	C	656.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.630;DP=135;Dels=0.01;FS=23.258;HaplotypeScore=97.4338;MLEAC=1;MLEAF=0.500;MQ=48.75;MQ0=1;MQRankSum=0.644;QD=4.86;ReadPosRankSum=1.677;SB=-6.260e+02	GT:AD:DP:GQ:PL	0/1:66,68:134:99:686,0,632
chrXI	144838	.	C	T	650.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;DP=129;Dels=0.00;FS=12.840;HaplotypeScore=121.4219;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=1;MQRankSum=0.568;QD=5.04;ReadPosRankSum=1.746;SB=-6.770e+02	GT:AD:DP:GQ:PL	0/1:62,67:129:99:680,0,450
chrXI	144862	.	T	C	104.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.887;DP=148;Dels=0.00;FS=11.622;HaplotypeScore=40.2872;MLEAC=1;MLEAF=0.500;MQ=40.27;MQ0=1;MQRankSum=-0.280;QD=0.70;ReadPosRankSum=-2.583;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:124,24:148:99:134,0,977
chrXI	144889	.	T	C	406.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.051;DP=136;Dels=0.00;FS=10.742;HaplotypeScore=6.5155;MLEAC=1;MLEAF=0.500;MQ=38.58;MQ0=0;MQRankSum=-0.755;QD=2.99;ReadPosRankSum=1.120;SB=-6.310e+02	GT:AD:DP:GQ:PL	0/1:69,67:136:99:436,0,483
chrXI	144916	.	C	T	1202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.460;DP=120;Dels=0.00;FS=15.867;HaplotypeScore=17.8959;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;MQRankSum=0.516;QD=10.02;ReadPosRankSum=2.579;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:15,105:120:93:1235,93,0
chrXI	144919	.	C	T	257.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.914;DP=116;Dels=0.00;FS=31.117;HaplotypeScore=36.7712;MLEAC=1;MLEAF=0.500;MQ=41.44;MQ0=0;MQRankSum=-3.412;QD=2.22;ReadPosRankSum=-2.520;SB=-1.520e+02	GT:AD:DP:GQ:PL	0/1:76,39:116:99:287,0,738
chrXI	144928	.	G	A	392.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;DP=103;Dels=0.00;FS=6.338;HaplotypeScore=27.2066;MLEAC=1;MLEAF=0.500;MQ=43.45;MQ0=0;MQRankSum=-6.577;QD=3.81;ReadPosRankSum=-6.958;SB=-5.130e+02	GT:AD:DP:GQ:PL	0/1:52,50:103:99:422,0,632
chrXI	144931	.	C	T	54.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=64;Dels=0.00;FS=24.149;HaplotypeScore=9.2851;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=0;MQRankSum=-3.376;QD=0.84;ReadPosRankSum=-2.191;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,11:64:84:84,0,700
chrXI	144932	.	A	G	44.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;DP=64;Dels=0.00;FS=32.186;HaplotypeScore=9.2851;MLEAC=1;MLEAF=0.500;MQ=51.11;MQ0=0;MQRankSum=-4.213;QD=0.69;ReadPosRankSum=-1.738;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:55,9:64:74:74,0,736
chrXI	144936	.	C	A	36.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;DP=65;Dels=0.00;FS=33.735;HaplotypeScore=10.0738;MLEAC=1;MLEAF=0.500;MQ=52.08;MQ0=0;MQRankSum=-4.056;QD=0.55;ReadPosRankSum=-2.190;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:54,9:65:66:66,0,808
chrXI	145622	.	C	T	2001	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6800;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.55;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2034,216,0
chrXI	145814	.	T	C	1975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.711;QD=25.32;ReadPosRankSum=1.643;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:2008,219,0
chrXI	145914	.	A	T	1798	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.97;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1831,189,0
chrXI	145993	.	G	C	1448	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.62;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1481,162,0
chrXI	146213	.	A	G	1542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.162;QD=20.29;ReadPosRankSum=1.640;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1575,171,0
chrXI	146407	.	A	G	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.004;HaplotypeScore=9.2648;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.472;QD=20.36;ReadPosRankSum=1.693;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,87:90:99:1865,210,0
chrXI	146436	.	T	C	1660	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.6564;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.53;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1693,192,0
chrXI	146502	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.02;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1398,153,0
chrXI	146595	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2018;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.47;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1450,159,0
chrXI	146650	.	A	G	1749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.120;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=0.823;QD=21.86;ReadPosRankSum=1.689;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1782,195,0
chrXI	146689	.	A	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=17.76;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1773,183,0
chrXI	146690	.	T	C	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=100;Dels=0.00;FS=2.477;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;MQRankSum=-1.299;QD=16.38;ReadPosRankSum=2.928;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:3,95:100:99:1671,183,0
chrXI	146730	.	G	A	1763	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=16.79;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1796,189,0
chrXI	146739	.	A	G	1558	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=111;Dels=0.00;FS=3.021;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;MQRankSum=-1.031;QD=14.04;ReadPosRankSum=2.361;SB=-1.402e+03	GT:AD:DP:GQ:PL	1/1:2,109:111:99:1591,174,0
chrXI	146743	.	A	T	1665	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.29;MQ0=0;MQRankSum=-1.315;QD=15.71;ReadPosRankSum=2.343;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:3,103:106:99:1698,177,0
chrXI	146747	.	T	C	1745	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.171;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-1.228;QD=15.86;ReadPosRankSum=1.701;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:1778,192,0
chrXI	146875	.	T	C	2022	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.7869;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.72;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2055,225,0
chrXI	147072	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=20.53;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1634,177,0
chrXI	147232	.	T	C	2097	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=3.740;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.518;QD=21.62;ReadPosRankSum=1.696;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2130,234,0
chrXI	147476	.	G	C	1422	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.31;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,66:70:99:1455,162,0
chrXI	148157	.	T	C	1676	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.321;QD=20.69;ReadPosRankSum=1.689;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1709,189,0
chrXI	148629	.	G	T	1079	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1112,117,0
chrXI	148801	.	T	C	1459	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.55;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1492,171,0
chrXI	148894	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;MQRankSum=0.796;QD=20.72;ReadPosRankSum=1.685;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1566,171,0
chrXI	149060	.	T	C	1172	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=18.60;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1205,132,0
chrXI	149154	.	G	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=21.28;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1565,177,0
chrXI	149497	.	G	T	52.97	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=32.06;MQ0=0;QD=1.56;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:9:85,9,0
chrXI	150466	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.421;QD=21.42;ReadPosRankSum=1.688;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1725,186,0
chrXI	150646	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.25;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1329,135,0
chrXI	150866	.	C	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1225,129,0
chrXI	151229	.	G	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.77;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1399,147,0
chrXI	151379	.	A	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=23.26;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1033,111,0
chrXI	151420	.	A	T	999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.410;DP=43;Dels=0.00;FS=5.921;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.410;QD=23.23;ReadPosRankSum=1.652;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:1032,108,0
chrXI	151546	.	A	G	1617	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.46;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,68:72:99:1650,180,0
chrXI	151866	.	G	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.77;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1383,144,0
chrXI	152140	.	G	A	1855	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.605;QD=22.62;ReadPosRankSum=0.718;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1888,204,0
chrXI	152290	.	G	A	1938	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.80;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1971,207,0
chrXI	152294	.	A	G	1824	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=21.98;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1857,198,0
chrXI	152351	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8429;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=19.44;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1491,159,0
chrXI	152571	.	T	G	3306.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=135;Dels=0.00;FS=3.522;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.988;QD=24.49;ReadPosRankSum=1.681;SB=-1.566e+03	GT:AD:DP:GQ:PL	1/1:1,134:135:99:3306,357,0
chrXI	152615	.	C	G	2643	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.65;SB=-1.635e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2676,288,0
chrXI	152632	.	C	T	2511	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.09;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2544,267,0
chrXI	152711	.	C	T	2207	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.52;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2240,237,0
chrXI	153726	.	C	A	1712	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=13.9312;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.14;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1745,189,0
chrXI	153799	.	C	T	2073	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.03;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2106,231,0
chrXI	154732	.	C	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1387,153,0
chrXI	154842	.	T	C	2209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=4.845;HaplotypeScore=7.6652;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.073;QD=18.41;ReadPosRankSum=1.703;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2242,243,0
chrXI	155185	.	A	T	1857	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.8470;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.34;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1890,201,0
chrXI	155453	.	C	T	2365	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.50;SB=-1.465e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2398,252,0
chrXI	155819	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.12;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1559,165,0
chrXI	156351	.	G	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.73;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1513,162,0
chrXI	156363	.	C	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.55;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1406,150,0
chrXI	156513	.	T	C	1169	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.16;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1202,132,0
chrXI	156730	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.491;DP=43;Dels=0.00;FS=4.030;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.927;QD=20.40;ReadPosRankSum=1.652;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:910,99,0
chrXI	157764	.	T	C	1045	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.77;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1078,123,0
chrXI	158139	.	T	G	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.681;QD=20.21;ReadPosRankSum=1.609;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1165,132,0
chrXI	162553	.	G	A	918	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.39;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:951,102,0
chrXI	162634	.	T	C	1972	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.042;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.7652;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.338;QD=21.67;ReadPosRankSum=2.125;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:2005,216,0
chrXI	162925	.	G	A	2454	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.11;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2487,264,0
chrXI	164020	.	G	T	1809	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.46;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1842,201,0
chrXI	166502	.	G	A	2815	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=15.9796;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=18.52;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,151:152:99:2848,303,0
chrXI	167261	.	A	G	785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.443;QD=18.26;ReadPosRankSum=1.652;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:90:818,90,0
chrXI	169186	.	T	C	1307	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.752;QD=24.66;ReadPosRankSum=1.667;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1340,147,0
chrXI	170526	.	G	A	1348	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=16.64;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1381,150,0
chrXI	170968	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.86;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1602,171,0
chrXI	171261	.	G	A	3600.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.5801;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.38;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3600,375,0
chrXI	171361	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.92;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1436,150,0
chrXI	171432	.	C	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=15.99;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1168,135,0
chrXI	171457	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8422;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.94;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1181,126,0
chrXI	171772	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.18;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1408,153,0
chrXI	172796	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1341,144,0
chrXI	173024	.	C	T	935	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:968,105,0
chrXI	173315	.	G	C	1076	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.64;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1109,126,0
chrXI	173411	.	G	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.98;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1250,135,0
chrXI	173558	.	T	C	1312	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.49;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1345,153,0
chrXI	174509	.	C	T	1794	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.86;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1827,201,0
chrXI	176335	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.24;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1399,150,0
chrXI	176487	.	C	T	2479	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.2541;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.94;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2512,264,0
chrXI	176572	.	G	A	1777	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.3148;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.32;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1810,192,0
chrXI	176582	.	G	A	1664	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.70;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1697,183,0
chrXI	176967	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.35;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1154,129,0
chrXI	177029	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7750;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.49;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1513,168,0
chrXI	177209	.	A	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.65;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1188,129,0
chrXI	177230	.	C	T	1209	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=21.59;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1242,129,0
chrXI	177254	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.13;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1140,126,0
chrXI	177426	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.30;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1454,159,0
chrXI	177482	.	G	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.64;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1388,147,0
chrXI	177512	.	A	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.29;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1433,156,0
chrXI	177551	.	C	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.75;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1402,156,0
chrXI	177557	.	A	G	1272	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.27;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1305,141,0
chrXI	177747	.	A	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.24;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1269,138,0
chrXI	177965	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.75;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1580,177,0
chrXI	178140	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.08;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1513,162,0
chrXI	178177	.	G	A	1875	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=24.35;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1908,204,0
chrXI	178223	.	A	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.65;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1440,165,0
chrXI	178243	.	G	A	1203	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.72;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,56:61:99:1236,135,0
chrXI	178268	.	C	A	985	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.10;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1018,111,0
chrXI	178383	.	G	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.20;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1199,129,0
chrXI	178399	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.97;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1191,129,0
chrXI	178417	.	T	A	1151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=1.020;QD=15.77;ReadPosRankSum=1.685;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1184,126,0
chrXI	178422	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=17.06;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1364,144,0
chrXI	178486	.	A	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=18.58;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1687,186,0
chrXI	179179	.	A	G	652	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.598;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=28.0287;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=0.487;QD=16.72;ReadPosRankSum=2.815;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,36:39:75:685,75,0
chrXI	179200	.	T	A	532	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=19.00;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:60:565,60,0
chrXI	179372	.	A	G	541	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.54;SB=-6.523e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:63:574,63,0
chrXI	179405	.	T	C	361	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=17.19;SB=-6.790e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:45:394,45,0
chrXI	179422	.	T	C	612	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=19.12;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:69:645,69,0
chrXI	179499	.	C	G	782	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=24.44;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:87:815,87,0
chrXI	179509	.	G	A	643	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=22.17;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:72:676,72,0
chrXI	179637	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1553,171,0
chrXI	179688	.	T	C	1670	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=-1.244;QD=23.19;ReadPosRankSum=1.683;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1703,186,0
chrXI	179723	.	C	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=21.39;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1466,153,0
chrXI	179732	.	T	C	1220	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=21.03;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1253,138,0
chrXI	179745	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.98;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1166,129,0
chrXI	179758	.	C	T	782	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=18.62;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:815,90,0
chrXI	179928	.	T	C	1452	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.36;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1485,165,0
chrXI	179949	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.44;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1433,150,0
chrXI	180074	.	G	A	1229	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.48;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1262,132,0
chrXI	180128	.	A	G	922	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.62;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:955,108,0
chrXI	180215	.	T	C	980	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.60;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1013,111,0
chrXI	180271	.	A	G	889	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=15.07;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:922,102,0
chrXI	182533	.	C	T	3412.01	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.19;SB=-1.471e+03	GT:AD:DP:GQ:PL	1/1:0,167:169:99:3412,381,0
chrXI	182907	.	C	T	2865	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6015;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-1.474e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2898,300,0
chrXI	183479	.	A	T	2324	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.13;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2357,261,0
chrXI	184295	.	G	A	638	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.79;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:69:671,69,0
chrXI	184809	.	C	T	2391	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=25.17;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2424,258,0
chrXI	185737	.	G	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5430;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=15.68;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1115,120,0
chrXI	185749	.	C	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.42;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1084,114,0
chrXI	186127	.	A	C	2776	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.53;SB=-1.405e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2809,309,0
chrXI	186668	.	A	G	2562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=131;Dels=0.00;FS=2.886;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=0.347;QD=19.56;ReadPosRankSum=2.393;SB=-1.337e+03	GT:AD:DP:GQ:PL	1/1:2,129:131:99:2595,282,0
chrXI	186787	.	T	A	2857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.012;DP=143;Dels=0.00;FS=15.255;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.448;QD=19.98;ReadPosRankSum=4.012;SB=-1.808e+03	GT:AD:DP:GQ:PL	1/1:6,137:143:99:2890,306,0
chrXI	186950	.	T	C	2013	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.14;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2046,225,0
chrXI	187207	.	G	A	1631	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.42;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1664,180,0
chrXI	187243	.	C	T	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.353;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.9542;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.024;QD=19.49;ReadPosRankSum=0.641;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1495,162,0
chrXI	187398	.	A	G	1968	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.252;DP=88;Dels=0.00;FS=3.061;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.609;QD=22.36;ReadPosRankSum=2.393;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:2001,222,0
chrXI	188443	.	G	A	1111	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.49;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1144,123,0
chrXI	188539	.	T	A	1171	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.7750;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=19.85;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1204,126,0
chrXI	188557	.	T	C	1175	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=67;Dels=0.00;FS=3.012;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;MQRankSum=1.403;QD=17.54;ReadPosRankSum=2.263;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:99:1208,132,0
chrXI	188706	.	G	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.34;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1294,144,0
chrXI	188740	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.67;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1115,123,0
chrXI	188875	.	T	A	2189	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.79;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2222,231,0
chrXI	188981	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.87;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1901,207,0
chrXI	188982	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.73;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1850,204,0
chrXI	189011	.	G	A	989	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=14.76;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1022,111,0
chrXI	189250	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=17.76;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1631,171,0
chrXI	189718	.	G	A	1221	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.22;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1254,138,0
chrXI	189929	.	C	T	1492	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.94;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1525,162,0
chrXI	190193	.	T	C	1427	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.39;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1460,162,0
chrXI	190366	.	G	A	2308	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.98;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2341,252,0
chrXI	194063	.	G	A	2038	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.79;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2071,216,0
chrXI	194175	.	C	G	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;DP=62;Dels=0.00;FS=67.482;HaplotypeScore=9.9932;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-0.195;QD=0.69;ReadPosRankSum=-3.864;SB=-6.485e-03	GT:AD:DP:GQ:PL	0/1:41,20:62:73:73,0,602
chrXI	194206	.	G	A	830	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.96;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:96:863,96,0
chrXI	194220	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.51;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1139,120,0
chrXI	194270	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.655;QD=18.73;ReadPosRankSum=1.685;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1419,153,0
chrXI	194297	.	G	A	1786	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.52;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1819,198,0
chrXI	194470	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=3.140;HaplotypeScore=7.3538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.611;QD=18.91;ReadPosRankSum=1.681;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1338,147,0
chrXI	194564	.	A	C	1962	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.5063;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.51;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,103:106:99:1995,219,0
chrXI	194575	.	C	T	2107	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.69;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2140,225,0
chrXI	194609	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.8749;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.86;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1962,210,0
chrXI	194709	.	C	T	1110	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.20;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1143,120,0
chrXI	195038	.	G	T	1315	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.92;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1348,144,0
chrXI	195050	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=44.4594;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.82;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1162,126,0
chrXI	195199	.	T	C	1612	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.49;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1645,186,0
chrXI	195226	.	A	C	2234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.979;DP=115;Dels=0.00;FS=6.291;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-1.316;QD=19.43;ReadPosRankSum=2.407;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:2,113:115:99:2267,246,0
chrXI	195269	.	G	A	3203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.974;QD=23.38;ReadPosRankSum=1.403;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:1,136:137:99:3236,348,0
chrXI	195729	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.475;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.431;QD=20.94;ReadPosRankSum=1.682;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1478,159,0
chrXI	195771	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.09;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1379,147,0
chrXI	195819	.	T	C	1511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-1.633;QD=21.28;ReadPosRankSum=1.683;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1544,168,0
chrXI	196002	.	G	A	962	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.47;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:995,111,0
chrXI	196171	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.20;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1498,165,0
chrXI	196264	.	T	C	1618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.451;DP=102;Dels=0.00;FS=15.100;HaplotypeScore=10.0016;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.654;QD=15.86;ReadPosRankSum=4.486;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:10,91:102:99:1651,183,0
chrXI	196346	.	T	A	2236	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.29;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2269,252,0
chrXI	196560	.	G	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=17.62;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1108,120,0
chrXI	196565	.	C	T	1146	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=20.84;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1179,123,0
chrXI	196712	.	T	C	2177	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.16;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2210,237,0
chrXI	196916	.	C	T	907	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=18.51;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:940,105,0
chrXI	196937	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.84;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1256,138,0
chrXI	197099	.	G	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.4565;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.41;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1666,177,0
chrXI	197297	.	A	G	1667	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.53;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1700,195,0
chrXI	197329	.	T	C	1650	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.62;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1683,189,0
chrXI	197500	.	A	G	1491	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2630;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.25;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1524,162,0
chrXI	198257	.	G	A	1034	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.15;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1067,120,0
chrXI	198833	.	C	T	1279	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1312,138,0
chrXI	201803	.	A	G	1916	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.97;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1949,216,0
chrXI	201819	.	A	T	1766	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.41;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1799,189,0
chrXI	201927	.	C	T	666	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.48;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:72:699,72,0
chrXI	201996	.	G	A	740	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.14;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:773,84,0
chrXI	202082	.	C	T	1958	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.78;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1991,207,0
chrXI	202106	.	A	G	1839	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.21;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1872,201,0
chrXI	202183	.	C	G	2319	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.51;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2352,252,0
chrXI	202339	.	A	G	914	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=21.76;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:947,102,0
chrXI	202432	.	C	T	2757	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.42;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2790,303,0
chrXI	202506	.	G	A	3303.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=22.62;SB=-1.504e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3303,345,0
chrXI	202593	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=22.06;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1202,129,0
chrXI	202594	.	T	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=22.74;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1238,129,0
chrXI	202631	.	G	C	499	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.83;MQ0=0;QD=17.82;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:60:532,60,0
chrXI	203086	.	G	C	610	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=13.56;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:72:643,72,0
chrXI	203125	.	T	A	62.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739;DP=60;Dels=0.00;FS=11.921;HaplotypeScore=51.3562;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;MQRankSum=0.083;QD=1.04;ReadPosRankSum=-4.037;SB=2.49	GT:AD:DP:GQ:PL	1/1:51,9:60:12:95,12,0
chrXI	203268	.	A	C	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;MQRankSum=1.495;QD=22.44;ReadPosRankSum=1.685;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1671,180,0
chrXI	203301	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=19.57;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1364,144,0
chrXI	203317	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=18.34;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1207,129,0
chrXI	203486	.	C	T	1907	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.67;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1940,213,0
chrXI	204122	.	C	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.22;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1272,138,0
chrXI	204194	.	A	T	2289	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=26.01;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2322,246,0
chrXI	204464	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.48;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1180,126,0
chrXI	204566	.	A	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6220;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=14.23;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1186,129,0
chrXI	204941	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.30;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1162,123,0
chrXI	204974	.	C	G	1049	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.41;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1082,117,0
chrXI	205059	.	A	C	1974	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.50;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2007,219,0
chrXI	205160	.	T	C	814	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.85;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:847,96,0
chrXI	205207	.	G	A	794	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.47;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:87:827,87,0
chrXI	205356	.	C	G	2853	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.38;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,115:117:99:2886,312,0
chrXI	205481	.	G	T	695	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.86;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:728,78,0
chrXI	205525	.	C	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.43;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1177,132,0
chrXI	206732	.	G	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.40;SB=-1.405e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2400,258,0
chrXI	207105	.	G	A	1562	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.77;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1595,174,0
chrXI	207429	.	C	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.91;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1810,189,0
chrXI	207449	.	C	T	1803	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.49;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1836,192,0
chrXI	208114	.	T	C	808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=43;Dels=0.00;FS=3.093;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=-0.952;QD=18.79;ReadPosRankSum=2.105;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:2,41:43:93:841,93,0
chrXI	208115	.	A	T	817	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.02;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.45;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:850,90,0
chrXI	208582	.	A	C	2345	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.0735;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.87;SB=-1.470e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2378,264,0
chrXI	208639	.	C	A	1976	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.16;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2009,213,0
chrXI	208745	.	A	G	1784	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.76;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1817,210,0
chrXI	209175	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2807;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.95;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1587,168,0
chrXI	209185	.	T	A	1424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=0.778;QD=20.06;ReadPosRankSum=0.628;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1457,153,0
chrXI	209311	.	T	C	1869	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.48;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1902,213,0
chrXI	209449	.	G	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=17.56;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1543,168,0
chrXI	209467	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.27;MQ0=0;QD=18.31;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1351,147,0
chrXI	209485	.	A	C	991	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.15;MQ0=0;QD=14.79;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1024,114,0
chrXI	209488	.	A	G	934	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=14.59;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:967,105,0
chrXI	209515	.	T	C	728	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=13.48;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:84:761,84,0
chrXI	209743	.	G	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.79;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1907,201,0
chrXI	210091	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=24.75;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1592,171,0
chrXI	210725	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.977;DP=73;Dels=0.00;FS=8.421;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.963;QD=16.49;ReadPosRankSum=2.349;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1237,138,0
chrXI	210799	.	C	T	2674	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.10;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2707,303,0
chrXI	211081	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.94;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1083,120,0
chrXI	212912	.	C	T	1733	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.13;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1766,189,0
chrXI	213000	.	T	G	1388	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=79;Dels=0.00;FS=2.943;HaplotypeScore=6.0442;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.304;QD=17.57;ReadPosRankSum=2.194;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:2,75:79:99:1421,159,0
chrXI	213004	.	C	T	1375	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=17.19;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1408,156,0
chrXI	213281	.	T	C	1383	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=75.4442;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=16.87;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1416,159,0
chrXI	213298	.	A	T	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.150;QD=16.30;ReadPosRankSum=1.647;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1353,147,0
chrXI	213304	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=15.90;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1321,138,0
chrXI	213389	.	T	G	1560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=81;Dels=0.00;FS=3.349;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.390;QD=19.26;ReadPosRankSum=1.689;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1593,174,0
chrXI	213451	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;DP=78;Dels=0.00;FS=3.183;HaplotypeScore=7.3808;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.202;QD=18.65;ReadPosRankSum=1.687;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1488,165,0
chrXI	213543	.	A	G	989	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;DP=47;Dels=0.00;FS=2.772;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=-0.606;QD=21.04;ReadPosRankSum=2.345;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:99:1022,114,0
chrXI	213580	.	C	G	908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.9136;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;MQRankSum=0.962;QD=14.41;ReadPosRankSum=1.347;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:941,108,0
chrXI	213597	.	T	G	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=7.930;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-0.050;QD=13.53;ReadPosRankSum=2.383;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1048,117,0
chrXI	213630	.	C	T	1937	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5525;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=18.27;SB=-1.292e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1970,204,0
chrXI	213680	.	G	A	2448	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=24.48;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2481,270,0
chrXI	213714	.	A	G	1971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=4.719;HaplotypeScore=3.8385;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.313;QD=23.46;ReadPosRankSum=1.690;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:2004,219,0
chrXI	214537	.	A	G	2093	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.00;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2126,231,0
chrXI	215200	.	T	C	1682	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.27;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1715,195,0
chrXI	215535	.	A	G	1728	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=83;Dels=0.00;FS=9.685;HaplotypeScore=8.4402;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.012;QD=20.82;ReadPosRankSum=2.867;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:3,80:83:99:1761,198,0
chrXI	215651	.	A	G	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=3.066;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.680;QD=23.76;ReadPosRankSum=2.327;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1934,210,0
chrXI	215962	.	A	G	1591	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.17;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1624,177,0
chrXI	215965	.	T	C	1572	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.41;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1605,177,0
chrXI	216007	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9003;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.05;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1557,165,0
chrXI	216046	.	G	A	1927	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3905;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.18;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1960,204,0
chrXI	216378	.	C	T	1909	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.73;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1942,207,0
chrXI	216646	.	T	C	743	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.12;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:776,87,0
chrXI	216709	.	A	C	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.449;QD=19.07;ReadPosRankSum=2.392;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:2,83:86:99:1673,183,0
chrXI	216973	.	A	G	993	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.57;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1026,111,0
chrXI	217370	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.499;DP=76;Dels=0.00;FS=7.622;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.147;QD=19.92;ReadPosRankSum=3.709;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:5,71:76:99:1547,171,0
chrXI	217430	.	T	G	44.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.805;DP=70;Dels=0.00;FS=64.362;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=57.38;MQ0=0;MQRankSum=2.475;QD=0.63;ReadPosRankSum=-2.351;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:40,30:70:74:74,0,466
chrXI	217457	.	A	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.53;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1430,156,0
chrXI	217796	.	G	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.51;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1568,171,0
chrXI	217814	.	A	G	1454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.205;DP=78;Dels=0.00;FS=12.861;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=1.869;QD=18.64;ReadPosRankSum=3.319;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:4,74:78:99:1487,162,0
chrXI	218976	.	A	G	1872	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.70;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1905,213,0
chrXI	219042	.	T	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.56;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1729,186,0
chrXI	219454	.	G	C	2771	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.35;SB=-1.436e+03	GT:AD:DP:GQ:PL	1/1:0,119:124:99:2804,306,0
chrXI	220323	.	C	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.79;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1893,210,0
chrXI	220329	.	C	T	1931	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.91;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1964,210,0
chrXI	220380	.	T	C	1570	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.05;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1603,180,0
chrXI	220647	.	A	G	1951	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.658;DP=94;Dels=0.00;FS=3.153;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.211;QD=20.76;ReadPosRankSum=0.652;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1984,201,0
chrXI	220701	.	T	C	2110	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=22.69;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2143,243,0
chrXI	220785	.	A	T	877	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=16.87;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:910,99,0
chrXI	220788	.	T	C	966	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=18.58;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:999,114,0
chrXI	220819	.	C	A	839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=9.031;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.516;QD=17.48;ReadPosRankSum=1.227;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:93:872,93,0
chrXI	220881	.	G	A	1491	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.15;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1524,162,0
chrXI	220933	.	G	A	1854	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.37;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1887,195,0
chrXI	221472	.	A	C	2045	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.5875;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.66;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2078,228,0
chrXI	221479	.	T	C	2091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.313;QD=19.91;ReadPosRankSum=1.666;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2124,237,0
chrXI	221817	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=19.17;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2065,216,0
chrXI	221820	.	G	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=18.62;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1970,210,0
chrXI	222033	.	A	G	888	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.73;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:99:921,105,0
chrXI	223233	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.7924;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.674;QD=23.97;ReadPosRankSum=-0.029;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1447,159,0
chrXI	223330	.	T	C	1773	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.89;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1806,198,0
chrXI	232838	.	T	C	1081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.724;QD=19.65;ReadPosRankSum=1.669;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1114,120,0
chrXI	232839	.	C	T	1084	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=3.2524;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.433;QD=19.36;ReadPosRankSum=1.547;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1117,120,0
chrXI	233135	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.2783;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.63;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1427,156,0
chrXI	233252	.	T	G	1427	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.39;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1460,165,0
chrXI	233535	.	G	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.06;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1924,207,0
chrXI	234252	.	G	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.5605;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.82;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1209,132,0
chrXI	234299	.	G	A	873	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.79;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:906,99,0
chrXI	234378	.	C	T	2212	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.04;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2245,237,0
chrXI	234641	.	A	G	1902	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.424;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=1.260;QD=21.61;ReadPosRankSum=1.653;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1935,213,0
chrXI	245907	.	T	C	609	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=14.85;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:642,75,0
chrXI	246336	.	G	A	1692	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.14;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1725,183,0
chrXI	247710	.	G	A	1177	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.30;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1210,132,0
chrXI	247900	.	A	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.06;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1128,120,0
chrXI	247965	.	T	C	692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.294;DP=49;Dels=0.00;FS=9.645;HaplotypeScore=5.0427;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=-0.370;QD=14.12;ReadPosRankSum=2.398;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:4,42:49:87:725,87,0
chrXI	248030	.	G	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.28;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1726,183,0
chrXI	248050	.	A	T	1741	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.61;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1774,189,0
chrXI	248307	.	G	C	348	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=6.57;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:42:381,42,0
chrXI	248310	.	C	A	393	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=7.42;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:45:426,45,0
chrXI	248487	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.34;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1387,153,0
chrXI	248663	.	G	A	922	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.76;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:955,105,0
chrXI	248727	.	A	G	1385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.155;QD=20.98;ReadPosRankSum=1.627;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1418,159,0
chrXI	249447	.	T	A	1027	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.75;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1060,117,0
chrXI	249567	.	T	C	932	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.02;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:965,105,0
chrXI	249660	.	A	G	1868	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.808;DP=90;Dels=0.00;FS=5.700;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.398;QD=20.76;ReadPosRankSum=2.921;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:3,87:90:99:1901,207,0
chrXI	249723	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.94;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1326,147,0
chrXI	249846	.	C	T	702	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=16.71;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:81:735,81,0
chrXI	249855	.	T	C	623	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=16.39;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:656,72,0
chrXI	249882	.	A	G	724	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=16.09;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:81:757,81,0
chrXI	249915	.	T	C	675	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=12.98;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:78:708,78,0
chrXI	249924	.	C	T	769	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=14.79;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:802,84,0
chrXI	249960	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=1.392;QD=17.67;ReadPosRankSum=0.540;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1111,126,0
chrXI	250113	.	G	A	980	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.60;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1013,111,0
chrXI	250134	.	G	A	849	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.87;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:96:882,96,0
chrXI	250305	.	T	C	2002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.590;QD=22.00;ReadPosRankSum=1.694;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2035,222,0
chrXI	250932	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.43;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1323,150,0
chrXI	251727	.	G	C	1247	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.78;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,57:60:99:1280,147,0
chrXI	251749	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.51;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1161,123,0
chrXI	252174	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.5503;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=18.05;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1405,153,0
chrXI	252204	.	C	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.9994;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.41;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,102:106:99:2090,231,0
chrXI	252966	.	C	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.04;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1642,174,0
chrXI	254074	.	C	T	1425	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.59;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1458,153,0
chrXI	254086	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.69;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1378,144,0
chrXI	254358	.	C	T	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=87;Dels=0.00;FS=4.139;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.023;QD=18.03;ReadPosRankSum=0.480;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,82:87:99:1602,180,0
chrXI	254951	.	G	C	1891	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.06;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1924,210,0
chrXI	254966	.	A	G	1841	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.16;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1874,207,0
chrXI	255050	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.68;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1802,198,0
chrXI	255077	.	G	A	1892	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.65;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1925,201,0
chrXI	255436	.	C	T	1671	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.0580;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.43;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1704,183,0
chrXI	256511	.	C	T	2211	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.7431;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=1;QD=23.03;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2244,237,0
chrXI	256593	.	C	A	2057	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.03;FS=0.000;HaplotypeScore=32.5661;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.58;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2090,228,0
chrXI	256701	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.752;QD=21.59;ReadPosRankSum=1.667;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:99:1199,132,0
chrXI	256761	.	A	G	958	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.78;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:991,111,0
chrXI	257878	.	T	A	1935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.630;QD=21.99;ReadPosRankSum=1.693;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1968,210,0
chrXI	257993	.	G	T	2016	SnpCluster	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.17;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2049,219,0
chrXI	258001	.	T	A	1946	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=22.11;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1979,207,0
chrXI	258002	.	C	A	1985	SnpCluster	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.30;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2018,213,0
chrXI	258576	.	T	C	1736	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.17;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1769,195,0
chrXI	258604	.	A	T	1846	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.3910;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.64;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1879,201,0
chrXI	258873	.	A	G	1938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.139;QD=19.00;ReadPosRankSum=1.697;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:1,99:102:99:1971,216,0
chrXI	259465	.	T	C	1865	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.28;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1898,216,0
chrXI	259753	.	A	G	1519	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.50;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1552,171,0
chrXI	259792	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.71;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1242,129,0
chrXI	259862	.	C	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.28;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1128,123,0
chrXI	260037	.	G	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=16.94;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1422,156,0
chrXI	260106	.	A	G	1871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=4.244;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=-1.471;QD=20.12;ReadPosRankSum=1.695;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1904,210,0
chrXI	260129	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.40;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1563,174,0
chrXI	260152	.	C	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=19.07;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1177,126,0
chrXI	260236	.	G	A	650	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=15.85;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:72:683,72,0
chrXI	260245	.	A	C	608	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=15.59;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:641,72,0
chrXI	260286	.	A	G	940	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.08;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:973,105,0
chrXI	261608	.	T	C	1220	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.68;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1253,138,0
chrXI	261680	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.33;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1062,117,0
chrXI	261697	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.28;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1203,123,0
chrXI	262136	.	C	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.64;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1414,150,0
chrXI	262447	.	T	C	1657	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.52;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1690,186,0
chrXI	262474	.	T	C	1159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=3.485;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.836;QD=19.64;ReadPosRankSum=1.673;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1192,129,0
chrXI	262597	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=3.522;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.622;QD=22.84;ReadPosRankSum=1.677;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1495,168,0
chrXI	262636	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.51;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1676,183,0
chrXI	263047	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.05;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1444,150,0
chrXI	263187	.	C	T	1429	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1462,153,0
chrXI	263834	.	G	A	1579	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.93;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1612,168,0
chrXI	263873	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.23;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1519,168,0
chrXI	263921	.	T	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3597;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.68;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1336,144,0
chrXI	263970	.	C	T	2134	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.56;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2167,231,0
chrXI	264078	.	A	G	2358	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=112;Dels=0.00;FS=12.358;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.009;QD=21.05;ReadPosRankSum=2.937;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:3,109:112:99:2391,264,0
chrXI	264216	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.2574;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.385;QD=18.91;ReadPosRankSum=1.668;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1073,117,0
chrXI	264387	.	G	A	2902	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.8540;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.88;SB=-1.695e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2935,312,0
chrXI	264567	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.84;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:971,102,0
chrXI	264611	.	T	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=4.210;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.597;QD=19.25;ReadPosRankSum=1.673;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1169,129,0
chrXI	264824	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.97;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1495,165,0
chrXI	264974	.	C	T	967	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.57;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1000,108,0
chrXI	265051	.	C	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.54;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1519,168,0
chrXI	265175	.	T	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.17;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1607,174,0
chrXI	265253	.	A	G	1100	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.64;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1133,123,0
chrXI	265290	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1242,135,0
chrXI	265405	.	G	C	1349	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1382,156,0
chrXI	265522	.	G	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.90;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1187,126,0
chrXI	265685	.	T	C	1243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.426;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.392;QD=20.38;ReadPosRankSum=-0.824;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1276,147,0
chrXI	265911	.	C	T	634	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=15.46;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:667,75,0
chrXI	265955	.	G	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1209,129,0
chrXI	266175	.	G	A	877	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.88;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:910,105,0
chrXI	266211	.	A	G	1220	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.96;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1253,138,0
chrXI	266376	.	G	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.57;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1123,123,0
chrXI	266462	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.27;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1224,138,0
chrXI	266523	.	A	G	1331	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.00;FS=3.070;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.194;QD=18.75;ReadPosRankSum=2.274;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1364,147,0
chrXI	266528	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.445;QD=18.99;ReadPosRankSum=1.683;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1362,150,0
chrXI	266610	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.42;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1297,141,0
chrXI	266664	.	G	A	1709	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1742,180,0
chrXI	266730	.	A	T	1646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=5.304;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.199;QD=21.10;ReadPosRankSum=1.599;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1679,183,0
chrXI	266841	.	G	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3170;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.80;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1842,201,0
chrXI	267171	.	C	T	2141	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.0805;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.64;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2174,228,0
chrXI	267180	.	A	G	2033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=110;Dels=0.00;FS=5.484;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-0.194;QD=18.48;ReadPosRankSum=2.862;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:3,106:110:99:2066,225,0
chrXI	267501	.	T	C	2035	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.02;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,104:107:99:2068,225,0
chrXI	267504	.	T	C	1896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=106;Dels=0.00;FS=5.880;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.760;QD=17.89;ReadPosRankSum=2.933;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:3,102:106:99:1929,213,0
chrXI	267528	.	C	T	1769	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.02;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1802,195,0
chrXI	267597	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.97;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1571,174,0
chrXI	267639	.	T	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.21;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1772,192,0
chrXI	267702	.	A	T	1651	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=3.434;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=-1.128;QD=18.98;ReadPosRankSum=1.692;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1684,180,0
chrXI	267712	.	C	T	1625	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=18.90;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1658,174,0
chrXI	267738	.	A	G	1434	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.07;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1467,162,0
chrXI	267822	.	G	A	2027	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5696;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.85;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2060,216,0
chrXI	268601	.	A	G	948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.269;QD=21.07;ReadPosRankSum=1.655;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:981,105,0
chrXI	268802	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=17.92;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1341,141,0
chrXI	269100	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.605;QD=23.18;ReadPosRankSum=1.690;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1957,213,0
chrXI	269184	.	A	T	3121	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.47;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3154,339,0
chrXI	269383	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.162;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.400;QD=18.12;ReadPosRankSum=1.685;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1356,153,0
chrXI	269480	.	A	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=16.18;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1214,132,0
chrXI	269500	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.19;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1374,147,0
chrXI	269524	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.85;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1448,150,0
chrXI	269563	.	T	C	2412	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.27;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2445,261,0
chrXI	269826	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.17;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1134,123,0
chrXI	270096	.	T	C	1517	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.98;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1550,174,0
chrXI	270178	.	G	C	775	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=15.50;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:87:808,87,0
chrXI	270231	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.99;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1324,150,0
chrXI	270342	.	G	A	1849	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.4665;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=19.26;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1882,207,0
chrXI	270852	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=74;Dels=0.01;FS=3.030;HaplotypeScore=13.4599;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=0.659;QD=22.92;ReadPosRankSum=2.382;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1729,189,0
chrXI	270883	.	T	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.93;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1700,189,0
chrXI	270966	.	C	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.5374;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=19.11;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1485,159,0
chrXI	270990	.	T	C	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.804;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=0.304;QD=21.27;ReadPosRankSum=2.386;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1671,180,0
chrXI	271016	.	G	A	1618	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.74;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1651,174,0
chrXI	271028	.	G	A	1177	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=15.69;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1210,132,0
chrXI	271048	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=16.67;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1133,126,0
chrXI	271129	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.88;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1726,186,0
chrXI	271156	.	T	G	1768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.309;QD=19.64;ReadPosRankSum=1.617;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1801,198,0
chrXI	271321	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=15.46;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1378,150,0
chrXI	271323	.	T	A	1269	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;MQRankSum=-1.320;QD=15.11;ReadPosRankSum=1.691;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1302,135,0
chrXI	271532	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.60;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2111,225,0
chrXI	271548	.	A	C	1472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;MQRankSum=0.787;QD=16.54;ReadPosRankSum=1.575;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1505,168,0
chrXI	271663	.	G	A	2437	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.9222;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=18.60;SB=-1.442e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2470,255,0
chrXI	271696	.	G	A	2290	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.41;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2323,249,0
chrXI	271718	.	A	G	2530	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=130;Dels=0.00;FS=3.038;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=1.811;QD=19.46;ReadPosRankSum=2.392;SB=-1.587e+03	GT:AD:DP:GQ:PL	1/1:2,125:130:99:2563,282,0
chrXI	272205	.	C	T	1889	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.47;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1922,201,0
chrXI	272320	.	C	T	2105	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.92;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,85:88:99:2138,225,0
chrXI	272494	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.07;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1311,141,0
chrXI	272511	.	G	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.37;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1137,120,0
chrXI	272578	.	A	T	1116	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.135;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.8429;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=1.673;QD=18.92;ReadPosRankSum=0.239;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1149,123,0
chrXI	272811	.	T	C	1663	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7174;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.32;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1696,180,0
chrXI	272960	.	G	C	1501	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.74;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1534,168,0
chrXI	273068	.	C	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.15;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1260,132,0
chrXI	273176	.	C	T	1676	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.35;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1709,180,0
chrXI	273206	.	A	G	1479	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;MQRankSum=0.522;QD=23.11;ReadPosRankSum=1.677;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1512,168,0
chrXI	273237	.	A	G	1656	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.35;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1689,183,0
chrXI	273297	.	T	C	2873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=133;Dels=0.00;FS=5.798;HaplotypeScore=10.5232;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;MQRankSum=0.114;QD=21.60;ReadPosRankSum=2.947;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:3,130:133:99:2906,324,0
chrXI	273558	.	T	A	2543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.047;QD=22.31;ReadPosRankSum=1.701;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2576,285,0
chrXI	273860	.	A	G	2249	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.02;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2282,249,0
chrXI	273882	.	A	G	2228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=-0.294;QD=20.82;ReadPosRankSum=1.699;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2261,246,0
chrXI	274112	.	C	T	1498	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.03;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1531,168,0
chrXI	274155	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=-0.445;QD=23.73;ReadPosRankSum=1.534;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1694,177,0
chrXI	274224	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.527;QD=18.70;ReadPosRankSum=1.682;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1323,150,0
chrXI	274263	.	C	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=15.75;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1088,117,0
chrXI	274276	.	T	C	1116	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=14.88;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1149,123,0
chrXI	274314	.	G	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.3349;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=18.31;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1608,171,0
chrXI	274403	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=13.4828;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.20;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1467,156,0
chrXI	274476	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.73;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1920,201,0
chrXI	274746	.	T	C	2347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.252;QD=23.01;ReadPosRankSum=1.698;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2380,264,0
chrXI	274968	.	T	C	1328	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.08;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1361,150,0
chrXI	275016	.	A	G	1581	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.53;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1614,177,0
chrXI	275312	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.64;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1113,114,0
chrXI	275326	.	A	G	902	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.19;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:935,102,0
chrXI	275360	.	A	C	787	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.74;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:90:820,90,0
chrXI	277055	.	G	T	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.267;DP=196;Dels=0.01;FS=301.276;HaplotypeScore=21.0910;MLEAC=1;MLEAF=0.500;MQ=53.16;MQ0=0;MQRankSum=-3.339;QD=0.13;ReadPosRankSum=-5.355;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:129,66:195:56:56,0,1237
chrXI	277663	.	G	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.00;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1353,153,0
chrXI	277694	.	G	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=23.15;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1121,117,0
chrXI	277754	.	T	C	973	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=17.69;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1006,111,0
chrXI	277761	.	G	A	1027	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=18.67;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1060,111,0
chrXI	277809	.	A	G	624	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=10.40;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:72:657,72,0
chrXI	277810	.	C	T	626	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=10.61;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:69:659,69,0
chrXI	278102	.	A	G	614	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;QD=19.19;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:72:647,72,0
chrXI	278119	.	C	A	614	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=17.06;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:647,72,0
chrXI	278143	.	T	G	691	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.18;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:724,81,0
chrXI	278179	.	C	T	1167	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3829;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=18.23;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1200,129,0
chrXI	278223	.	T	A	1636	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.381;DP=116;Dels=0.00;FS=17.048;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;MQRankSum=-1.877;QD=14.10;ReadPosRankSum=4.299;SB=-1.337e+03	GT:AD:DP:GQ:PL	1/1:8,108:116:99:1669,180,0
chrXI	278251	.	A	G	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=4.685;HaplotypeScore=121.6159;MLEAC=2;MLEAF=1.00;MQ=44.53;MQ0=0;MQRankSum=1.039;QD=0.11;ReadPosRankSum=1.386;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:1,149:150:6:47,6,0
chrXI	278388	.	C	T	1951	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=22.69;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1984,213,0
chrXI	278406	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.82;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1648,177,0
chrXI	278449	.	G	T	1314	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.90;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1347,147,0
chrXI	278756	.	A	C	2053	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=119;Dels=0.00;FS=15.242;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;MQRankSum=-1.954;QD=17.25;ReadPosRankSum=2.367;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:2,117:119:99:2086,231,0
chrXI	278761	.	C	A	1920	SnpCluster	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;QD=17.78;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1953,210,0
chrXI	278762	.	T	C	1782	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.60;MQ0=0;QD=17.30;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1815,210,0
chrXI	278767	.	T	C	1641	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.370;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;MQRankSum=-1.784;QD=16.09;ReadPosRankSum=3.319;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:4,98:102:99:1674,183,0
chrXI	278776	.	G	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=15.99;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1536,171,0
chrXI	278902	.	T	A	615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=38;Dels=0.00;FS=11.066;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.948;QD=16.18;ReadPosRankSum=2.321;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:2,36:38:69:648,69,0
chrXI	278924	.	A	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.36;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1153,126,0
chrXI	279017	.	T	A	3122	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.30;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:3155,336,0
chrXI	279067	.	G	T	2842	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=23.11;SB=-1.485e+03	GT:AD:DP:GQ:PL	1/1:0,121:123:99:2875,312,0
chrXI	279099	.	G	A	2716	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=20.89;SB=-1.613e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2749,291,0
chrXI	279188	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5905;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.42;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1490,165,0
chrXI	279367	.	A	G	2332	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2365,258,0
chrXI	279830	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.67;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1832,207,0
chrXI	279884	.	C	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.17;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1471,156,0
chrXI	280580	.	G	A	823	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.07;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:856,90,0
chrXI	280749	.	T	C	470	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=16.79;SB=-1.580e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:57:503,57,0
chrXI	281006	.	G	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.23;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1608,174,0
chrXI	281139	.	C	T	1105	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.02;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1138,120,0
chrXI	281172	.	A	G	1223	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.96;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1256,135,0
chrXI	281307	.	C	T	1096	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.08;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1129,117,0
chrXI	282240	.	A	G	813	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.07;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:846,96,0
chrXI	282383	.	G	T	1306	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.73;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1339,141,0
chrXI	282489	.	A	T	2036	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.83;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2069,219,0
chrXI	282515	.	C	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.69;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1564,162,0
chrXI	282982	.	T	C	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.596;QD=23.56;ReadPosRankSum=2.355;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1871,204,0
chrXI	283085	.	C	T	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.391;DP=73;Dels=0.00;FS=4.199;HaplotypeScore=5.2488;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;MQRankSum=0.952;QD=20.45;ReadPosRankSum=1.439;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1526,159,0
chrXI	283094	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.531;DP=69;Dels=0.00;FS=4.239;HaplotypeScore=5.2168;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.929;QD=18.68;ReadPosRankSum=0.577;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1322,144,0
chrXI	283164	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.12;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1836,192,0
chrXI	283495	.	C	T	2090	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.00;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2123,219,0
chrXI	283710	.	C	G	1656	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.44;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1689,186,0
chrXI	283762	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=88;Dels=0.00;FS=5.651;HaplotypeScore=12.3867;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.640;QD=21.44;ReadPosRankSum=1.989;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1920,207,0
chrXI	283904	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.95;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1185,129,0
chrXI	284248	.	T	C	1582	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.157;QD=23.97;ReadPosRankSum=1.627;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1615,180,0
chrXI	284656	.	A	C	1260	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.66;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1293,141,0
chrXI	284714	.	T	C	1596	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.47;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1629,180,0
chrXI	284721	.	A	C	1370	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.04;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1403,153,0
chrXI	284914	.	C	T	957	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.36;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:990,108,0
chrXI	285242	.	A	G	780	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:813,90,0
chrXI	285383	.	C	T	1532	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.43;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1565,165,0
chrXI	286522	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.00;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1283,138,0
chrXI	286581	.	G	A	1383	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=24.70;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1416,147,0
chrXI	286932	.	A	C	2031	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.32;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:2064,225,0
chrXI	287048	.	A	T	2635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=116;Dels=0.00;FS=3.326;HaplotypeScore=5.6981;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.064;QD=22.72;ReadPosRankSum=1.003;SB=-1.389e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2668,273,0
chrXI	287276	.	C	G	1202	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=16.69;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1235,141,0
chrXI	287278	.	T	A	1422	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=18.71;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1455,150,0
chrXI	287380	.	C	T	2976	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.81;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,121:125:99:3009,315,0
chrXI	287715	.	C	T	2039	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.9015;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.37;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2072,231,0
chrXI	288159	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.99;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1665,174,0
chrXI	288252	.	G	A	2150	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.50;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2183,228,0
chrXI	288285	.	T	C	1746	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.29;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1779,192,0
chrXI	288425	.	T	G	1945	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.43;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1978,213,0
chrXI	288501	.	C	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.17;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1303,138,0
chrXI	288683	.	C	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.17;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1546,168,0
chrXI	288741	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.90;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1684,174,0
chrXI	288812	.	A	C	1619	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=23.46;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1652,180,0
chrXI	288830	.	T	C	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=73;Dels=0.00;FS=3.058;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.079;QD=21.52;ReadPosRankSum=2.381;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1604,174,0
chrXI	288886	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.54;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1701,186,0
chrXI	288934	.	C	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.44;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,82:85:99:1770,198,0
chrXI	289501	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1102;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.027;QD=21.27;ReadPosRankSum=1.677;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1373,150,0
chrXI	289718	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.9254;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.56;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1965,207,0
chrXI	289859	.	G	C	1013	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.47;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1046,114,0
chrXI	289966	.	T	C	1081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=-0.257;QD=20.02;ReadPosRankSum=1.668;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1114,123,0
chrXI	290110	.	G	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.2961;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.94;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1349,141,0
chrXI	290335	.	T	A	1220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.294;QD=23.02;ReadPosRankSum=1.667;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1253,132,0
chrXI	290656	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.595;QD=20.72;ReadPosRankSum=1.577;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1442,162,0
chrXI	291164	.	A	G	2585	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.3201;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.35;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2618,288,0
chrXI	291274	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=70;Dels=0.00;FS=4.111;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=-0.440;QD=18.24;ReadPosRankSum=1.629;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,66:70:99:1310,150,0
chrXI	291275	.	A	G	1285	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.90;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1318,150,0
chrXI	291288	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=19.21;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1243,135,0
chrXI	291378	.	C	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=21.43;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2090,225,0
chrXI	291388	.	T	G	1997	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;MQRankSum=-0.469;QD=18.49;ReadPosRankSum=1.700;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2030,222,0
chrXI	291391	.	C	T	1987	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=0;QD=18.40;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2020,222,0
chrXI	291599	.	T	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.77;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1339,144,0
chrXI	291796	.	C	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.41;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1584,168,0
chrXI	292055	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.72;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1101,114,0
chrXI	297280	.	G	A	1530	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1563,168,0
chrXI	297401	.	C	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.1931;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.35;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1909,204,0
chrXI	297476	.	G	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9022;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.11;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1669,177,0
chrXI	297512	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.51;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1883,204,0
chrXI	297561	.	G	A	1950	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.21;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1983,219,0
chrXI	300640	.	A	G	2961	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.50;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2994,324,0
chrXI	301521	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.3726;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.33;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,59:63:99:1377,150,0
chrXI	302097	.	T	C	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.325;QD=22.41;ReadPosRankSum=1.691;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1938,216,0
chrXI	302470	.	G	T	2768	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.22;MQ0=0;QD=21.80;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2801,297,0
chrXI	302490	.	T	A	3233.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.311;DP=151;Dels=0.00;FS=7.133;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;MQRankSum=0.381;QD=21.41;ReadPosRankSum=4.436;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:7,144:151:99:3269,354,0
chrXI	302979	.	A	G	2332	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.4052;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=1;QD=22.00;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2365,261,0
chrXI	308560	.	A	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.97;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1373,150,0
chrXI	308754	.	T	G	2348	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.25;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2381,258,0
chrXI	309009	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.03;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.76;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1357,144,0
chrXI	309090	.	T	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.8720;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.39;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1764,189,0
chrXI	309188	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.633;DP=59;Dels=0.00;FS=6.239;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.246;QD=19.73;ReadPosRankSum=2.809;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:3,55:59:99:1197,132,0
chrXI	309294	.	G	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.83;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1692,177,0
chrXI	309751	.	T	G	1503	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.59;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1536,168,0
chrXI	310152	.	C	T	2090	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=22.23;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2123,222,0
chrXI	310373	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.85;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1235,135,0
chrXI	310423	.	T	A	1174	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.341;QD=18.94;ReadPosRankSum=1.453;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1207,126,0
chrXI	310507	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=17.46;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1273,147,0
chrXI	310580	.	A	G	632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.346;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=43.14;MQ0=0;MQRankSum=-0.560;QD=9.29;ReadPosRankSum=1.579;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:75:665,75,0
chrXI	310692	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.67;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1680,177,0
chrXI	310702	.	C	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.86;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1582,168,0
chrXI	310798	.	C	A	1036	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=21.58;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1069,114,0
chrXI	310861	.	A	G	703	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=21.30;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:81:736,81,0
chrXI	311030	.	T	C	1187	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.15;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1220,132,0
chrXI	311077	.	G	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.0340;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.35;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1498,159,0
chrXI	311174	.	T	G	258.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.349;DP=65;Dels=0.00;FS=3.361;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=32.71;MQ0=0;MQRankSum=-0.783;QD=3.97;ReadPosRankSum=-6.902;SB=-2.590e+02	GT:AD:DP:GQ:PL	0/1:35,30:65:55:288,0,55
chrXI	311278	.	T	C	677	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=13.27;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:81:710,81,0
chrXI	311288	.	A	G	457	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=40.26;MQ0=0;QD=9.93;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:54:490,54,0
chrXI	311294	.	A	C	299	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=3.823;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;MQRankSum=-1.733;QD=7.29;ReadPosRankSum=1.648;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:36:332,36,0
chrXI	311302	.	C	G	156.06	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.60;MQ0=0;QD=4.46;SB=-3.671e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:21:189,21,0
chrXI	311306	.	A	G	207.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=3.716;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;MQRankSum=1.213;QD=5.18;ReadPosRankSum=1.646;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:27:240,27,0
chrXI	311331	.	T	C	380	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.39;MQ0=0;MQRankSum=-1.053;QD=7.45;ReadPosRankSum=1.664;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:45:413,45,0
chrXI	311338	.	C	T	427	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=8.54;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:48:460,48,0
chrXI	311410	.	A	T	888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=1.333;QD=16.75;ReadPosRankSum=1.399;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:921,99,0
chrXI	311431	.	A	T	845	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=18.78;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:878,96,0
chrXI	311462	.	A	G	844	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.85;MQ0=0;QD=17.58;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:877,99,0
chrXI	311476	.	C	G	725	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.90;MQ0=0;QD=13.94;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:90:758,90,0
chrXI	311502	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=17.81;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1155,129,0
chrXI	311526	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=17.63;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1232,138,0
chrXI	311590	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.38;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1380,147,0
chrXI	311668	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=19.14;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1488,162,0
chrXI	311735	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=16.91;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1386,156,0
chrXI	311744	.	T	G	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;MQRankSum=-0.274;QD=17.08;ReadPosRankSum=1.687;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1348,144,0
chrXI	311803	.	C	T	1056	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=16.00;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1089,117,0
chrXI	311820	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.65;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1145,126,0
chrXI	311850	.	T	A	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.137;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=0.247;QD=18.60;ReadPosRankSum=1.683;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1335,147,0
chrXI	311897	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=15.67;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1067,120,0
chrXI	311898	.	A	G	986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=0.240;QD=15.17;ReadPosRankSum=1.679;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1019,114,0
chrXI	311975	.	G	A	1729	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=90;Dels=0.00;FS=3.680;HaplotypeScore=14.3957;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.330;QD=19.21;ReadPosRankSum=0.907;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:1,85:90:99:1762,195,0
chrXI	312014	.	G	C	1559	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=16.24;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1592,174,0
chrXI	312016	.	C	T	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=0.885;QD=16.71;ReadPosRankSum=1.437;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1604,171,0
chrXI	312273	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.95;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1569,165,0
chrXI	312289	.	C	T	1945	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.05;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1978,213,0
chrXI	312353	.	T	C	2440	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.8483;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.40;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2473,267,0
chrXI	312511	.	T	C	992	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.08;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1025,114,0
chrXI	312545	.	T	G	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=-0.777;QD=17.53;ReadPosRankSum=1.673;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1067,117,0
chrXI	312553	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.83;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1156,132,0
chrXI	312734	.	A	C	1270	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=3.399;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.544;QD=18.14;ReadPosRankSum=0.445;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1303,144,0
chrXI	313024	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=22.46;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1156,132,0
chrXI	313063	.	C	T	792	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=18.42;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:825,87,0
chrXI	313073	.	A	C	1012	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.09;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1045,114,0
chrXI	313195	.	G	A	1895	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=46.73;MQ0=0;QD=19.54;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1928,207,0
chrXI	313226	.	A	G	1853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=8.403;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;MQRankSum=-0.931;QD=21.55;ReadPosRankSum=2.393;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1886,213,0
chrXI	313299	.	T	C	827	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;QD=17.60;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:96:860,96,0
chrXI	313318	.	G	A	902	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.79;MQ0=0;QD=20.04;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:935,99,0
chrXI	313345	.	G	T	632	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=20.39;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:665,69,0
chrXI	313349	.	T	C	613	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=20.43;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:646,69,0
chrXI	313365	.	C	T	488	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=18.77;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:57:521,57,0
chrXI	313367	.	G	A	513	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=19.73;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:57:546,57,0
chrXI	313486	.	G	A	1089	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=18.46;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1122,117,0
chrXI	313488	.	T	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=17.39;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1059,117,0
chrXI	313507	.	T	C	863	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=18.36;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:96:896,96,0
chrXI	313513	.	T	G	911	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=18.98;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:99:944,105,0
chrXI	313523	.	T	A	823	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=0;QD=18.29;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:90:856,90,0
chrXI	313544	.	A	C	682	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=18.94;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:78:715,78,0
chrXI	313602	.	G	A	485	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.14;MQ0=0;QD=14.26;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:54:518,54,0
chrXI	313757	.	C	T	406	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=20.30;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:48:439,48,0
chrXI	313761	.	C	T	450	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.29;MQ0=0;QD=20.45;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:51:483,51,0
chrXI	313827	.	C	T	415	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=0;QD=19.76;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,20:21:48:448,48,0
chrXI	313858	.	T	C	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=7.93;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,3:3:6:55,6,0
chrXI	313924	.	G	A	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=0;QD=3.14;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:6:50,6,0
chrXI	313985	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.258;DP=48;Dels=0.00;FS=23.544;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.30;MQ0=0;MQRankSum=3.632;QD=23.65;ReadPosRankSum=3.632;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:6,42:48:99:1168,120,0
chrXI	313997	.	T	C	1194	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=24.37;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1227,135,0
chrXI	314119	.	G	C	1035	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.73;MQ0=0;QD=24.07;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1068,117,0
chrXI	314126	.	G	A	863	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=23.32;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:896,99,0
chrXI	314131	.	T	C	751	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=25.03;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:87:784,87,0
chrXI	314163	.	A	G	433	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=20.62;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:51:466,51,0
chrXI	314524	.	A	C	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=4.46;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,4:4:6:49,6,0
chrXI	314694	.	A	G	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;DP=83;Dels=0.00;FS=1.904;HaplotypeScore=6.9998;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;MQRankSum=0.398;QD=19.02;ReadPosRankSum=3.197;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:4,78:83:99:1612,174,0
chrXI	314713	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.14;MQ0=0;QD=20.73;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1733,186,0
chrXI	314752	.	T	C	1319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=3.052;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=-0.665;QD=20.29;ReadPosRankSum=2.374;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1352,153,0
chrXI	314787	.	C	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=21.77;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1622,177,0
chrXI	314820	.	T	C	1673	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=-0.356;QD=22.31;ReadPosRankSum=1.685;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,72:75:99:1706,186,0
chrXI	314862	.	C	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=26.14;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1863,198,0
chrXI	314906	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=25.04;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1811,195,0
chrXI	315068	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=73;Dels=0.03;FS=6.143;HaplotypeScore=9.8325;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-1.386;QD=18.33;ReadPosRankSum=2.844;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:3,68:71:99:1371,147,0
chrXI	315069	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=73;Dels=0.04;FS=3.074;HaplotypeScore=9.8325;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;MQRankSum=-0.123;QD=17.82;ReadPosRankSum=2.309;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1334,147,0
chrXI	315107	.	G	C	1091	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=18.81;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1124,123,0
chrXI	315617	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=23.96;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1710,186,0
chrXI	315654	.	G	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.55;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1477,162,0
chrXI	315726	.	A	G	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.929;QD=20.86;ReadPosRankSum=1.690;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1764,189,0
chrXI	315777	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.05;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1675,183,0
chrXI	315805	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=23.16;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1955,204,0
chrXI	315840	.	G	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=18.22;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1363,144,0
chrXI	315844	.	T	C	1163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.537;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;MQRankSum=0.891;QD=16.61;ReadPosRankSum=1.683;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1196,138,0
chrXI	315867	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=17.05;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1124,123,0
chrXI	315893	.	G	T	741	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=13.47;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:87:774,87,0
chrXI	315895	.	C	T	775	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=13.84;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:87:808,87,0
chrXI	315903	.	C	T	697	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;MQRankSum=-0.762;QD=13.94;ReadPosRankSum=1.386;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:84:730,84,0
chrXI	315904	.	T	A	734	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=14.39;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:767,87,0
chrXI	315915	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=16.57;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:961,105,0
chrXI	316142	.	T	C	1512	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=22.57;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1545,168,0
chrXI	316198	.	C	T	779	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.15;MQ0=0;QD=19.47;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:90:812,90,0
chrXI	316238	.	A	T	807	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=95.4317;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=15.52;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:840,90,0
chrXI	316245	.	T	C	12.99	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.529;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;MQRankSum=-0.021;QD=0.22;ReadPosRankSum=-1.654;SB=-3.676e+01	GT:AD:DP:GQ:PL	1/1:57,2:59:6:44,6,0
chrXI	316255	.	C	T	976	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=15.25;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1009,105,0
chrXI	316332	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.697;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=1;MQRankSum=-0.169;QD=14.45;ReadPosRankSum=1.690;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1232,135,0
chrXI	316346	.	A	G	1543	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=1;QD=16.96;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1576,174,0
chrXI	316362	.	C	A	1431	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=1;QD=17.45;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1464,153,0
chrXI	316511	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.57;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1188,126,0
chrXI	316643	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=19.48;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1221,126,0
chrXI	316707	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=19.17;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1241,138,0
chrXI	316845	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.48;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1008,111,0
chrXI	317019	.	A	G	1177	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.5808;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=20.65;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1210,135,0
chrXI	317142	.	G	C	1339	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.03;FS=0.000;HaplotypeScore=29.3373;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.39;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1372,150,0
chrXI	317375	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.210;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.418;QD=21.81;ReadPosRankSum=1.673;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1298,144,0
chrXI	317549	.	C	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.23;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1678,177,0
chrXI	317712	.	C	G	1282	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.81;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1315,144,0
chrXI	318219	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.9855;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.01;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1882,201,0
chrXI	318267	.	G	A	2091	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.76;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2124,222,0
chrXI	318777	.	C	T	1313	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.31;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1346,147,0
chrXI	318849	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1169,126,0
chrXI	318978	.	C	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.55;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1563,168,0
chrXI	319011	.	G	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2593;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.30;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1373,156,0
chrXI	319054	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.14;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1494,156,0
chrXI	319143	.	T	C	1108	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.3421;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.52;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1141,126,0
chrXI	320400	.	A	G	2258	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.34;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2291,246,0
chrXI	320565	.	G	A	1674	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.60;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1707,192,0
chrXI	321333	.	A	G	1240	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=1.180;QD=17.71;ReadPosRankSum=1.682;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1273,141,0
chrXI	321566	.	A	G	2376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=4.206;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.545;QD=22.00;ReadPosRankSum=1.700;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2409,258,0
chrXI	321631	.	T	C	1638	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=23.40;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1671,186,0
chrXI	321688	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.72;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1504,162,0
chrXI	321711	.	C	T	1339	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=18.86;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1372,153,0
chrXI	321714	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.04;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1385,156,0
chrXI	322024	.	C	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.35;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1600,174,0
chrXI	322047	.	A	C	1378	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2701;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.41;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1411,159,0
chrXI	322127	.	C	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=17.31;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1158,129,0
chrXI	322176	.	T	C	904	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.34;MQ0=0;QD=18.08;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:937,102,0
chrXI	322301	.	C	T	852	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.42;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:96:885,96,0
chrXI	322974	.	C	G	783	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=16.31;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:816,93,0
chrXI	322989	.	T	A	705	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=2.6711;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=15.67;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:738,78,0
chrXI	323019	.	A	T	797	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=19.92;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:830,90,0
chrXI	323187	.	G	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=15.73;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:1858,195,0
chrXI	323380	.	C	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.64;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1746,189,0
chrXI	323565	.	C	T	1973	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.17;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2006,219,0
chrXI	323761	.	G	A	1876	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3297;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.60;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1909,207,0
chrXI	323867	.	A	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.55;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1972,207,0
chrXI	324167	.	C	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.98;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1077,117,0
chrXI	324286	.	T	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.33;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1425,156,0
chrXI	324419	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1500,156,0
chrXI	324474	.	C	T	1540	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.69;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1573,165,0
chrXI	324673	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.60;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1372,153,0
chrXI	324920	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.32;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1521,171,0
chrXI	325126	.	A	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=24.52;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1357,141,0
chrXI	325158	.	C	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.29;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1433,159,0
chrXI	325756	.	G	T	1076	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=22.42;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1109,114,0
chrXI	325809	.	A	G	736	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.74;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:84:769,84,0
chrXI	326130	.	A	G	514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=26;Dels=0.00;FS=2.679;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=2.247;QD=19.77;ReadPosRankSum=2.729;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:3,23:26:60:547,60,0
chrXI	326243	.	T	C	704	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=18.53;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:737,78,0
chrXI	326248	.	A	T	620	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.90;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:75:653,75,0
chrXI	326668	.	C	G	2337	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.5558;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.05;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2370,261,0
chrXI	326734	.	C	T	1829	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.27;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1862,192,0
chrXI	326759	.	T	G	1660	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1345;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.346;QD=17.29;ReadPosRankSum=1.258;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:1693,186,0
chrXI	327038	.	G	A	2511	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=14.7912;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.92;SB=-1.400e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2544,276,0
chrXI	327663	.	G	A	1852	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.05;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1885,210,0
chrXI	327893	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.25;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1903,204,0
chrXI	327998	.	A	G	3058	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=25.48;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3091,327,0
chrXI	328028	.	C	G	2760	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.91;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:0,130:132:99:2793,306,0
chrXI	328041	.	T	C	2393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=133;Dels=0.00;FS=2.913;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=0.305;QD=17.99;ReadPosRankSum=2.339;SB=-1.482e+03	GT:AD:DP:GQ:PL	1/1:2,131:133:99:2426,264,0
chrXI	328057	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=18.17;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2013,219,0
chrXI	328102	.	C	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6712;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=15.68;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1695,183,0
chrXI	328199	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.86;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1410,147,0
chrXI	328292	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=15.85;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1000,111,0
chrXI	328373	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=15.42;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1452,159,0
chrXI	328613	.	T	C	881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.226;QD=19.15;ReadPosRankSum=1.657;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:914,99,0
chrXI	328619	.	A	T	918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.104;DP=51;Dels=0.00;FS=7.659;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-0.718;QD=18.00;ReadPosRankSum=2.302;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:951,102,0
chrXI	328709	.	G	C	952	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.04;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:985,108,0
chrXI	328853	.	A	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.49;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1278,135,0
chrXI	329222	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.687;QD=19.45;ReadPosRankSum=1.677;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1278,141,0
chrXI	329569	.	A	C	2075	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.4594;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.76;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2108,231,0
chrXI	329573	.	T	C	2077	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.4643;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.41;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2110,237,0
chrXI	329624	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=16.78;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1677,186,0
chrXI	329774	.	T	C	3498.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.73;SB=-1.724e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3498,384,0
chrXI	329799	.	T	A	2861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=141;Dels=0.00;FS=7.176;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=-0.985;QD=20.29;ReadPosRankSum=2.397;SB=-1.748e+03	GT:AD:DP:GQ:PL	1/1:2,139:141:99:2894,300,0
chrXI	329812	.	A	T	2653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=141;Dels=0.00;FS=9.219;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;MQRankSum=-0.664;QD=18.82;ReadPosRankSum=2.907;SB=-1.861e+03	GT:AD:DP:GQ:PL	1/1:3,138:141:99:2686,282,0
chrXI	329896	.	A	C	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=9.168;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.447;QD=18.36;ReadPosRankSum=2.396;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1704,189,0
chrXI	329897	.	T	C	1600	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=18.60;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1633,180,0
chrXI	329955	.	G	A	1691	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.58;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1724,183,0
chrXI	330019	.	G	T	2785	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.87;SB=-1.411e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2818,294,0
chrXI	330549	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.16;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1162,129,0
chrXI	330610	.	C	A	1902	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.37;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1935,201,0
chrXI	330692	.	G	A	1532	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=16.9275;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=13.68;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,106:112:99:1565,177,0
chrXI	331388	.	A	G	2483	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.42;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2516,285,0
chrXI	331675	.	A	G	2400	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2433,264,0
chrXI	332101	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.10;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1801,195,0
chrXI	332454	.	A	G	2183	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.98;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2216,243,0
chrXI	332476	.	G	A	2146	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.68;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2179,228,0
chrXI	332863	.	A	C	1892	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.79;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1925,210,0
chrXI	332964	.	G	A	1665	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.81;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1698,180,0
chrXI	333057	.	C	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7485;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.29;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1482,156,0
chrXI	333073	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.710;DP=61;Dels=0.00;FS=3.704;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=1.448;QD=20.72;ReadPosRankSum=1.675;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1297,141,0
chrXI	333079	.	A	G	1313	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.18;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1346,147,0
chrXI	333397	.	G	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.88;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1674,183,0
chrXI	333556	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.34;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1335,144,0
chrXI	333577	.	T	C	1150	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.54;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1183,129,0
chrXI	333609	.	C	T	2099	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.99;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2132,231,0
chrXI	333757	.	A	G	2367	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.6195;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.33;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2400,267,0
chrXI	333833	.	G	C	2149	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5363;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.47;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2182,243,0
chrXI	333876	.	T	C	2346	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.34;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2379,264,0
chrXI	333999	.	C	T	2641	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.7257;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.97;SB=-1.548e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2674,282,0
chrXI	334135	.	C	A	2705	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.4522;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.52;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2738,294,0
chrXI	334433	.	A	T	2305	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.76;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2338,249,0
chrXI	334655	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.65;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2068,225,0
chrXI	334735	.	C	T	1671	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.13;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1704,186,0
chrXI	334980	.	T	C	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=11.875;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.787;QD=22.55;ReadPosRankSum=1.687;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1769,189,0
chrXI	334995	.	G	A	2026	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.02;SB=-1.520e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2059,216,0
chrXI	335143	.	C	G	291	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=20.3809;MLEAC=2;MLEAF=1.00;MQ=44.85;MQ0=0;QD=8.82;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,32:33:39:324,39,0
chrXI	335281	.	A	G	1490	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.43;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1523,174,0
chrXI	335312	.	G	A	2095	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.24;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2128,225,0
chrXI	335383	.	C	T	1013	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=25.32;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1046,114,0
chrXI	335408	.	T	G	443	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.26;SB=-1.830e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:54:476,54,0
chrXI	335429	.	C	T	361	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.41;SB=-2.570e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:42:394,42,0
chrXI	335465	.	G	C	509	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=16.42;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:60:542,60,0
chrXI	335606	.	A	G	1426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=77;Dels=0.00;FS=2.825;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.347;QD=18.52;ReadPosRankSum=2.320;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1459,159,0
chrXI	336012	.	C	T	1856	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.20;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1889,198,0
chrXI	336059	.	T	C	2043	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.51;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2076,228,0
chrXI	336133	.	C	T	2989	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=24.91;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3022,318,0
chrXI	336232	.	G	A	2202	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=24.74;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2235,237,0
chrXI	336526	.	C	T	2393	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=18.13;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2426,261,0
chrXI	336540	.	G	A	2272	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.76;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2305,240,0
chrXI	336698	.	G	A	2541	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8456;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.83;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2574,270,0
chrXI	337206	.	A	G	2074	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=20.95;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,93:99:99:2107,228,0
chrXI	337365	.	T	G	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=2.981;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=1.562;QD=20.09;ReadPosRankSum=1.990;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1540,168,0
chrXI	337387	.	T	A	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=83;Dels=0.00;FS=9.331;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.293;QD=19.30;ReadPosRankSum=2.389;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1635,174,0
chrXI	337504	.	G	T	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=71;Dels=0.00;FS=13.473;HaplotypeScore=133.1267;MLEAC=1;MLEAF=0.500;MQ=42.91;MQ0=0;MQRankSum=-1.880;QD=0.52;ReadPosRankSum=-3.767;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:59,12:71:67:67,0,779
chrXI	337522	.	G	T	29.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DP=65;Dels=0.00;FS=29.775;HaplotypeScore=179.1958;MLEAC=1;MLEAF=0.500;MQ=35.42;MQ0=0;MQRankSum=3.847;QD=0.45;ReadPosRankSum=-4.624;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,12:65:59:59,0,218
chrXI	337530	.	T	C	288.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.121;DP=61;Dels=0.00;FS=8.066;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;MQRankSum=-2.778;QD=4.72;ReadPosRankSum=2.570;SB=-2.812e+02	GT:AD:DP:GQ:PL	1/1:5,56:61:17:321,17,0
chrXI	337549	.	G	T	330.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.91;MQ0=0;MQRankSum=-2.413;QD=5.00;ReadPosRankSum=1.702;SB=-4.412e+02	GT:AD:DP:GQ:PL	0/1:2,64:66:2:359,0,2
chrXI	337554	.	C	T	328.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=-2.033;QD=5.14;ReadPosRankSum=2.001;SB=-4.258e+02	GT:AD:DP:GQ:PL	0/1:3,61:64:4:358,0,4
chrXI	337581	.	C	T	45.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=310.4786;MLEAC=2;MLEAF=1.00;MQ=38.68;MQ0=0;MQRankSum=1.112;QD=0.69;ReadPosRankSum=0.801;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:9:78,9,0
chrXI	337585	.	G	T	82.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DP=67;Dels=0.00;FS=10.280;HaplotypeScore=63.2599;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=0;MQRankSum=-2.639;QD=1.23;ReadPosRankSum=-0.454;SB=-4.845e+02	GT:AD:DP:GQ:PL	1/1:8,59:67:12:115,12,0
chrXI	337772	.	T	C	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=69;Dels=0.00;FS=2.811;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.805;QD=21.04;ReadPosRankSum=2.379;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1485,162,0
chrXI	337833	.	A	C	1223	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.99;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1256,138,0
chrXI	337857	.	T	C	985	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.42;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1018,111,0
chrXI	337917	.	G	A	1228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.0876;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;MQRankSum=0.088;QD=20.81;ReadPosRankSum=1.674;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1261,132,0
chrXI	337945	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.71;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1400,153,0
chrXI	337995	.	C	T	1810	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.21;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1843,195,0
chrXI	338056	.	C	T	2185	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.42;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2218,234,0
chrXI	338730	.	A	T	2599	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.48;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2632,279,0
chrXI	338893	.	G	A	2215	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;QD=17.04;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2248,237,0
chrXI	339113	.	T	C	4538.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=195;Dels=0.00;FS=7.269;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-0.662;QD=23.27;ReadPosRankSum=2.424;SB=-2.263e+03	GT:AD:DP:GQ:PL	1/1:2,190:195:99:4538,487,0
chrXI	339180	.	C	T	3010	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=22.6614;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=19.29;SB=-1.469e+03	GT:AD:DP:GQ:PL	1/1:0,156:156:99:3043,324,0
chrXI	339266	.	T	C	1020	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=17.29;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1053,117,0
chrXI	339536	.	A	G	1397	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.5760;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1430,159,0
chrXI	340007	.	T	C	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.084;QD=21.32;ReadPosRankSum=1.698;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2229,243,0
chrXI	340064	.	A	G	2137	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.25;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2170,237,0
chrXI	340070	.	A	G	2032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=2.976;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-0.221;QD=17.22;ReadPosRankSum=2.260;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:2,115:118:99:2065,231,0
chrXI	340124	.	C	T	1774	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=18.29;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1807,192,0
chrXI	340155	.	T	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.07;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1887,207,0
chrXI	340231	.	G	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3674;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=16.16;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1229,135,0
chrXI	340235	.	A	G	1042	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=68;Dels=0.00;FS=2.742;HaplotypeScore=5.6335;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.940;QD=15.32;ReadPosRankSum=2.229;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:2,65:68:98:1075,98,0
chrXI	340285	.	G	C	914	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.3089;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=16.04;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:947,108,0
chrXI	340583	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.43;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1565,174,0
chrXI	340770	.	T	A	542	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=12.32;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:66:575,66,0
chrXI	340783	.	C	T	666	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=16.65;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:75:699,75,0
chrXI	340811	.	T	C	745	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=17.33;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:778,84,0
chrXI	340901	.	C	T	1076	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1109,120,0
chrXI	341413	.	C	T	1315	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.29;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1348,147,0
chrXI	341641	.	G	A	2142	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.34;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2175,228,0
chrXI	341753	.	A	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.90;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1706,180,0
chrXI	341778	.	A	T	1318	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.61;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1351,141,0
chrXI	342298	.	G	A	868	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=13.35;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:901,102,0
chrXI	342308	.	G	C	936	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=14.86;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:969,108,0
chrXI	342445	.	A	G	772	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.55;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:805,87,0
chrXI	342490	.	C	T	922	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.08;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:955,99,0
chrXI	342529	.	C	T	958	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.55;SB=-9.501e+01	GT:AD:DP:GQ:PL	1/1:0,48:49:99:991,102,0
chrXI	342780	.	A	G	714	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.87;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:84:747,84,0
chrXI	342813	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.93;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1001,105,0
chrXI	342972	.	A	G	765	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.68;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:93:798,93,0
chrXI	343095	.	A	C	791	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=17.58;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:824,93,0
chrXI	343212	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.10;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1700,180,0
chrXI	343231	.	C	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.84;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1246,135,0
chrXI	343371	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.58;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1464,165,0
chrXI	343477	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.21;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1543,165,0
chrXI	343519	.	T	C	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=0.688;QD=18.09;ReadPosRankSum=1.685;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1372,150,0
chrXI	343522	.	T	C	1385	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.31;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1418,153,0
chrXI	343772	.	C	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.00;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1453,159,0
chrXI	343793	.	C	T	1146	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.36;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1179,132,0
chrXI	343824	.	A	G	1002	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.3157;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=15.90;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1035,117,0
chrXI	343926	.	T	C	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-0.605;QD=18.37;ReadPosRankSum=1.649;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1558,168,0
chrXI	343932	.	G	A	1488	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.60;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1521,165,0
chrXI	343968	.	T	C	1435	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=16.69;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1468,159,0
chrXI	344089	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6939;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=17.33;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1506,168,0
chrXI	344106	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0536;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.16;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1431,159,0
chrXI	344217	.	G	A	1022	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=18.25;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1055,114,0
chrXI	344242	.	G	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=19.09;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1255,132,0
chrXI	344249	.	C	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4184;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=18.84;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1314,141,0
chrXI	344412	.	A	G	1283	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=9.2386;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=17.11;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1316,147,0
chrXI	344465	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=0.560;QD=20.71;ReadPosRankSum=1.681;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1441,156,0
chrXI	344684	.	C	T	872	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=15.57;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:905,96,0
chrXI	344692	.	C	T	778	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=14.15;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:811,93,0
chrXI	344734	.	G	C	1215	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=17.11;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:99:1248,138,0
chrXI	345147	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.11;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1237,132,0
chrXI	345623	.	T	C	1893	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.264;QD=20.14;ReadPosRankSum=1.694;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1926,213,0
chrXI	347287	.	T	G	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.685;DP=74;Dels=0.00;FS=3.507;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.732;QD=22.15;ReadPosRankSum=-1.685;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1672,160,0
chrXI	347878	.	A	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1251,135,0
chrXI	348083	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.53;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1374,144,0
chrXI	348351	.	C	T	2023	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.7885;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.52;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2056,222,0
chrXI	348711	.	C	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.22;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1226,129,0
chrXI	348900	.	G	A	2197	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=22.42;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2230,234,0
chrXI	349155	.	T	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.95;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1343,150,0
chrXI	349221	.	C	T	37.11	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=85.4597;MLEAC=1;MLEAF=0.500;MQ=61.32;MQ0=0;MQRankSum=0.642;QD=0.39;ReadPosRankSum=0.214;SB=-1.198e+03	GT:AD:DP:GQ:PL	0/1:1,90:95:13:67,0,13
chrXI	349225	.	G	C	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=88;Dels=0.00;FS=2.100;HaplotypeScore=79.9389;MLEAC=2;MLEAF=1.00;MQ=61.17;MQ0=0;MQRankSum=3.335;QD=0.17;ReadPosRankSum=3.015;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:4,84:88:6:46,6,0
chrXI	349347	.	G	A	2694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.356;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.3821;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.678;QD=20.88;ReadPosRankSum=1.383;SB=-1.494e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2727,282,0
chrXI	349504	.	A	G	2100	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=4.633;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.987;QD=22.58;ReadPosRankSum=1.695;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2133,243,0
chrXI	349875	.	C	T	2924	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=22.49;SB=-1.489e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:2957,306,0
chrXI	350071	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.181;QD=20.28;ReadPosRankSum=1.681;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1392,153,0
chrXI	350428	.	A	G	797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.320;QD=18.98;ReadPosRankSum=1.650;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:93:830,93,0
chrXI	350464	.	A	T	1136	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.25;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1169,123,0
chrXI	350473	.	A	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=17.95;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1110,120,0
chrXI	350485	.	T	C	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=0.412;QD=16.60;ReadPosRankSum=2.293;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1079,114,0
chrXI	350635	.	T	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.85;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1284,141,0
chrXI	350701	.	T	G	1331	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.18;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1364,150,0
chrXI	350761	.	C	A	1171	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.85;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1204,132,0
chrXI	350873	.	G	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=24.28;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1708,180,0
chrXI	351078	.	T	A	981	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=14.64;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1014,111,0
chrXI	351271	.	T	A	1774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.0677;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.365;QD=22.46;ReadPosRankSum=1.641;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1807,195,0
chrXI	351443	.	C	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.92;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1729,186,0
chrXI	351518	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.729;QD=17.47;ReadPosRankSum=1.641;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1361,156,0
chrXI	351536	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5523;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=16.94;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1371,147,0
chrXI	351752	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=3.065;HaplotypeScore=8.2946;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.122;QD=18.87;ReadPosRankSum=2.381;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1392,159,0
chrXI	351791	.	C	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.28;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1637,174,0
chrXI	352079	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.9375;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.05;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1762,186,0
chrXI	352346	.	T	A	2109	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.5144;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2142,231,0
chrXI	353672	.	A	G	933	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.269;QD=20.73;ReadPosRankSum=1.655;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:966,108,0
chrXI	353705	.	G	A	854	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:96:887,96,0
chrXI	353786	.	G	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.09;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1064,117,0
chrXI	354224	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.62;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1474,156,0
chrXI	355187	.	A	G	104.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.075;DP=75;Dels=0.00;FS=1.362;HaplotypeScore=63.1357;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.213;QD=1.39;ReadPosRankSum=-4.356;SB=2.87	GT:AD:DP:GQ:PL	1/1:65,10:75:18:137,18,0
chrXI	355400	.	T	G	1146	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=15.49;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1179,129,0
chrXI	355411	.	C	T	1072	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.31;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1105,120,0
chrXI	355412	.	G	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.07;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1088,120,0
chrXI	355474	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=16.77;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1140,126,0
chrXI	355535	.	C	G	739	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.60;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,36:42:84:772,84,0
chrXI	355543	.	A	G	758	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.49;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:791,90,0
chrXI	355752	.	C	G	2298	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=22.53;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2331,267,0
chrXI	355989	.	G	A	775	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=17.61;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:808,84,0
chrXI	356064	.	G	C	1339	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=20.29;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1372,150,0
chrXI	356086	.	A	G	1501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.28;MQ0=0;MQRankSum=-0.748;QD=18.53;ReadPosRankSum=1.647;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1534,174,0
chrXI	356125	.	T	G	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=8.206;HaplotypeScore=1.8583;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;MQRankSum=0.121;QD=14.85;ReadPosRankSum=1.047;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1310,144,0
chrXI	356171	.	G	A	1085	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.22;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1118,117,0
chrXI	356199	.	A	G	986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=52;Dels=0.00;FS=6.156;HaplotypeScore=4.8576;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.140;QD=18.96;ReadPosRankSum=2.862;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:3,48:52:99:1019,108,0
chrXI	356276	.	C	T	873	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.30;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:906,96,0
chrXI	356335	.	T	G	934	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=16.68;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:967,108,0
chrXI	356343	.	T	C	899	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=16.65;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:932,102,0
chrXI	356359	.	T	C	764	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=16.26;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:797,87,0
chrXI	356360	.	G	C	793	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=16.87;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:826,90,0
chrXI	356516	.	T	A	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.889;DP=57;Dels=0.00;FS=2.861;HaplotypeScore=6.7226;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=0.239;QD=21.25;ReadPosRankSum=0.499;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1244,138,0
chrXI	356876	.	A	G	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=86;Dels=0.00;FS=8.258;HaplotypeScore=8.7367;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=1.488;QD=18.60;ReadPosRankSum=2.360;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:2,81:86:99:1633,189,0
chrXI	357017	.	A	G	3388.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=6.3866;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=22.14;SB=-1.896e+03	GT:AD:DP:GQ:PL	1/1:0,151:153:99:3388,381,0
chrXI	357380	.	T	C	2600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=4.157;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.608;QD=23.01;ReadPosRankSum=1.701;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2633,288,0
chrXI	357712	.	C	T	2283	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=13.2407;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.34;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2316,243,0
chrXI	357746	.	G	A	2205	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.46;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2238,240,0
chrXI	357892	.	C	T	2091	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.91;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2124,228,0
chrXI	357925	.	A	T	2015	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.37;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2048,222,0
chrXI	357937	.	G	C	2031	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.46;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2064,234,0
chrXI	358041	.	C	T	1827	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.01;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1860,195,0
chrXI	358522	.	G	A	705	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.20;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:78:738,78,0
chrXI	358714	.	G	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.14;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1329,141,0
chrXI	358834	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.89;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1651,174,0
chrXI	359134	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=17.82;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1387,156,0
chrXI	359142	.	T	C	1391	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.30;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1424,162,0
chrXI	359311	.	C	A	2651	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.451e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2684,282,0
chrXI	359850	.	T	C	1628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.967;QD=21.14;ReadPosRankSum=1.597;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1661,180,0
chrXI	359854	.	G	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=22.03;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1641,177,0
chrXI	359874	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.347;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-0.905;QD=20.40;ReadPosRankSum=1.681;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1400,156,0
chrXI	360238	.	G	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.4451;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.81;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1420,159,0
chrXI	360304	.	G	A	1966	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.98;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1999,210,0
chrXI	360394	.	G	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.40;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1916,204,0
chrXI	360713	.	G	C	1760	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.95;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1793,195,0
chrXI	360927	.	C	T	2116	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=22.51;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2149,225,0
chrXI	360932	.	C	T	1967	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.28;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2000,210,0
chrXI	360940	.	C	T	1879	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.99;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1912,201,0
chrXI	360975	.	G	A	1901	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.4536;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.89;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1934,201,0
chrXI	361015	.	T	A	2059	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.13;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2092,231,0
chrXI	361052	.	G	A	2169	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.07;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2202,228,0
chrXI	361298	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=17.45;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1202,135,0
chrXI	361385	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=16.02;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1331,144,0
chrXI	361475	.	T	C	1760	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.33;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1793,195,0
chrXI	361482	.	T	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.31;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1754,192,0
chrXI	361682	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=20.72;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1235,129,0
chrXI	361703	.	G	A	1410	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.14;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1443,153,0
chrXI	361774	.	G	T	1696	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=21.20;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1729,186,0
chrXI	361800	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;MQRankSum=0.048;QD=19.64;ReadPosRankSum=1.684;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1447,165,0
chrXI	361807	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=20.18;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1466,165,0
chrXI	361812	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=20.37;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1500,165,0
chrXI	361861	.	T	G	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=1.342;QD=18.81;ReadPosRankSum=1.689;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1538,174,0
chrXI	361878	.	A	C	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=-0.041;QD=20.71;ReadPosRankSum=1.650;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1773,189,0
chrXI	361973	.	T	C	2427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=108;Dels=0.00;FS=2.552;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=0.935;QD=22.47;ReadPosRankSum=2.860;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:3,105:108:99:2460,273,0
chrXI	362017	.	A	C	2054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.195;DP=88;Dels=0.00;FS=3.206;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-0.751;QD=23.34;ReadPosRankSum=2.110;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:2,85:88:99:2087,210,0
chrXI	362101	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;MQRankSum=-0.433;QD=20.12;ReadPosRankSum=1.636;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1482,168,0
chrXI	362114	.	T	C	1372	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=18.54;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1405,156,0
chrXI	362157	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=15.32;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1029,117,0
chrXI	362170	.	G	T	835	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=14.40;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:868,99,0
chrXI	362171	.	A	G	819	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.22;MQ0=0;QD=14.37;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:852,99,0
chrXI	362186	.	T	C	1043	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=14.49;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1076,123,0
chrXI	362231	.	T	C	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=82;Dels=0.00;FS=7.252;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;MQRankSum=0.508;QD=16.50;ReadPosRankSum=2.388;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:2,78:82:99:1386,156,0
chrXI	362247	.	C	T	1590	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=18.49;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1623,177,0
chrXI	362299	.	G	A	1797	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=22.46;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1830,195,0
chrXI	362322	.	A	G	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=2.791;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=0.490;QD=20.81;ReadPosRankSum=2.338;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1864,204,0
chrXI	362657	.	A	G	1515	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.75;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1548,171,0
chrXI	362665	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=20.25;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1390,150,0
chrXI	363236	.	A	G	973	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.08;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1006,114,0
chrXI	363317	.	G	A	1972	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.6224;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.15;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2005,216,0
chrXI	363372	.	T	C	2289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.663;QD=22.66;ReadPosRankSum=1.697;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,99:101:99:2322,255,0
chrXI	363449	.	T	C	1653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.027;DP=89;Dels=0.00;FS=11.067;HaplotypeScore=6.5891;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=3.109;QD=18.57;ReadPosRankSum=3.679;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:5,84:89:99:1686,189,0
chrXI	363791	.	A	G	2757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.602;HaplotypeScore=4.5447;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.291;QD=25.06;ReadPosRankSum=1.638;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2790,309,0
chrXI	363953	.	T	C	1894	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.5162;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.57;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1927,219,0
chrXI	364133	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=18.77;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1403,150,0
chrXI	364194	.	C	T	1008	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=14.82;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1041,114,0
chrXI	364367	.	G	A	596	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=5.6209;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.62;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:629,69,0
chrXI	364384	.	T	C	564	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.62;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:63:597,63,0
chrXI	364488	.	G	A	646	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.19;SB=-1.520e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:81:679,81,0
chrXI	364489	.	G	A	678	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.87;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:75:711,75,0
chrXI	364568	.	T	C	637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.09;MQ0=0;MQRankSum=-1.039;QD=14.16;ReadPosRankSum=1.655;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:78:670,78,0
chrXI	364596	.	T	A	720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;MQRankSum=0.217;QD=15.00;ReadPosRankSum=1.660;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:84:753,84,0
chrXI	364605	.	C	T	636	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;QD=11.78;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:75:669,75,0
chrXI	364621	.	G	A	671	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=13.98;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:75:704,75,0
chrXI	364623	.	C	T	652	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=13.58;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:75:685,75,0
chrXI	364711	.	A	T	699	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.92;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:732,81,0
chrXI	364928	.	G	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=23.27;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1685,180,0
chrXI	364951	.	T	G	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;MQRankSum=0.171;QD=19.90;ReadPosRankSum=1.683;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1446,159,0
chrXI	364965	.	A	G	1427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.789;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=0.026;QD=21.30;ReadPosRankSum=1.681;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1460,159,0
chrXI	365043	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.82;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1364,147,0
chrXI	365138	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.45;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1359,150,0
chrXI	365167	.	C	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=18.94;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1378,156,0
chrXI	365209	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.55;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1332,141,0
chrXI	365224	.	T	C	1105	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.11;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1138,123,0
chrXI	365364	.	A	C	1587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=7.478;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=0.641;QD=20.88;ReadPosRankSum=2.384;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:2,73:76:99:1620,180,0
chrXI	365381	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.213;DP=74;Dels=0.00;FS=2.577;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-0.355;QD=18.74;ReadPosRankSum=1.200;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:2,71:74:99:1420,146,0
chrXI	365425	.	G	A	1069	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=16.45;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1102,123,0
chrXI	365453	.	C	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=16.84;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1060,120,0
chrXI	365664	.	A	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.27;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1266,132,0
chrXI	365859	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.95;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1387,147,0
chrXI	365937	.	G	A	1721	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.99;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1754,189,0
chrXI	366086	.	C	T	983	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.40;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1016,108,0
chrXI	366156	.	A	G	1090	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.03;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1123,123,0
chrXI	366174	.	G	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=15.77;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1058,114,0
chrXI	366213	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=17.74;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,65:68:99:1239,132,0
chrXI	366486	.	T	C	2113	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=13.4076;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.72;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2146,243,0
chrXI	366579	.	C	T	755	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=12.18;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:84:788,84,0
chrXI	366581	.	T	C	743	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=3.729;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-0.382;QD=12.38;ReadPosRankSum=1.674;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:84:776,84,0
chrXI	366681	.	A	C	1426	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.81;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1459,162,0
chrXI	366732	.	A	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=15.42;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1128,123,0
chrXI	366804	.	T	C	1630	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.88;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1663,186,0
chrXI	366808	.	T	C	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=3.384;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.325;QD=18.66;ReadPosRankSum=1.691;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1656,180,0
chrXI	366840	.	C	T	1894	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=17.22;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1927,210,0
chrXI	366860	.	C	T	2193	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.54;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2226,240,0
chrXI	366957	.	C	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.15;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1471,156,0
chrXI	366981	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.35;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1295,138,0
chrXI	367128	.	A	T	2183	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.73;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2216,231,0
chrXI	367251	.	A	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=22.49;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1877,204,0
chrXI	367533	.	C	T	845	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.24;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:878,93,0
chrXI	367626	.	T	C	1717	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.97;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1750,201,0
chrXI	367701	.	A	G	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2627;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.562;QD=20.16;ReadPosRankSum=1.685;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1525,171,0
chrXI	367753	.	A	G	856	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=8.334;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=-1.260;QD=15.85;ReadPosRankSum=2.359;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:889,99,0
chrXI	367768	.	C	G	836	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.16;MQ0=0;QD=15.48;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:93:869,93,0
chrXI	367787	.	T	C	708	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.781;QD=13.88;ReadPosRankSum=1.597;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:81:741,81,0
chrXI	367788	.	C	T	689	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=13.78;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:81:722,81,0
chrXI	367790	.	G	A	734	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=14.68;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:81:767,81,0
chrXI	367833	.	A	T	927	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.07;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:960,102,0
chrXI	367941	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.92;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1395,153,0
chrXI	367950	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.94;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1309,144,0
chrXI	368071	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=25.16;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1719,180,0
chrXI	368145	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=19.92;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1069,114,0
chrXI	368193	.	A	G	827	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=15.31;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:96:860,96,0
chrXI	368205	.	G	C	1085	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=16.69;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1118,129,0
chrXI	368244	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=15.84;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,66:70:99:1142,117,0
chrXI	368278	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=6.439;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.871;QD=19.08;ReadPosRankSum=2.351;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1464,159,0
chrXI	368313	.	T	C	1819	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.03;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1852,207,0
chrXI	368359	.	T	C	1798	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.76;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1831,207,0
chrXI	368525	.	G	A	1060	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.78;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1093,114,0
chrXI	368904	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.76;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1600,171,0
chrXI	368997	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.704;QD=18.18;ReadPosRankSum=1.624;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1215,135,0
chrXI	369378	.	G	A	1132	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.56;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1165,123,0
chrXI	369423	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.48;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1364,147,0
chrXI	369447	.	G	A	1437	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.66;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1470,153,0
chrXI	369689	.	A	T	927	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=13.63;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:960,99,0
chrXI	369878	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.4362;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.52;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2150,231,0
chrXI	370412	.	T	C	1032	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.8333;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.11;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1065,120,0
chrXI	370478	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.57;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1297,144,0
chrXI	370565	.	A	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.30;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1058,117,0
chrXI	370652	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.71;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1361,147,0
chrXI	370874	.	A	G	1594	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1627,183,0
chrXI	371345	.	G	A	1348	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.9859;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.42;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1381,156,0
chrXI	371456	.	A	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=74.0901;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=14.48;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1264,138,0
chrXI	371522	.	G	A	3378.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.4781;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.14;SB=-1.943e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3378,349,0
chrXI	371603	.	C	T	2386	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2419,258,0
chrXI	371802	.	C	T	2185	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=22.07;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2218,231,0
chrXI	371814	.	A	C	2023	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.86;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2056,234,0
chrXI	372140	.	T	G	1425	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=17.17;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1458,159,0
chrXI	372141	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=17.67;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1482,159,0
chrXI	372256	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.1308;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.253;QD=20.88;ReadPosRankSum=1.679;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1390,153,0
chrXI	372332	.	T	C	1405	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.66;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1438,159,0
chrXI	372443	.	C	T	2048	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.88;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2081,222,0
chrXI	372458	.	A	G	2096	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.59;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2129,231,0
chrXI	372830	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.18;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2051,216,0
chrXI	374056	.	A	G	2094	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.04;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2127,237,0
chrXI	374207	.	C	A	3969.01	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=11.0383;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=23.49;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:0,166:169:99:3969,412,0
chrXI	374280	.	A	G	2057	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.59;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2090,228,0
chrXI	374295	.	G	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.88;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1535,174,0
chrXI	374387	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.16;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1087,114,0
chrXI	374399	.	A	G	1044	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=16.84;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1077,123,0
chrXI	374531	.	A	G	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.732;QD=21.51;ReadPosRankSum=1.688;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1732,198,0
chrXI	374745	.	T	C	1579	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.8055;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=23.22;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1612,177,0
chrXI	382567	.	T	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=11.39;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chrXI	382614	.	T	A	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chrXI	383052	.	G	A	1609	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.74;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1642,180,0
chrXI	383133	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.356;DP=79;Dels=0.00;FS=3.049;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.921;QD=17.57;ReadPosRankSum=2.388;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1421,159,0
chrXI	383136	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.35;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1404,159,0
chrXI	383250	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.02;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1269,138,0
chrXI	383295	.	G	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.7492;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.24;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1547,174,0
chrXI	383334	.	T	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3748;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.64;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1468,165,0
chrXI	383487	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.12;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1180,129,0
chrXI	383538	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.53;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1303,144,0
chrXI	383652	.	G	A	1196	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=18.69;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1229,132,0
chrXI	383706	.	T	C	1491	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.64;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1524,168,0
chrXI	384068	.	A	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.02;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1214,138,0
chrXI	384120	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.13;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1744,189,0
chrXI	384196	.	C	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.64;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2213,231,0
chrXI	384219	.	G	C	1758	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=16.90;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,98:104:99:1791,201,0
chrXI	384228	.	C	T	1739	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.76;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1772,183,0
chrXI	384453	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.56;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1680,183,0
chrXI	384558	.	G	A	836	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=16.72;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:90:869,90,0
chrXI	384573	.	T	C	715	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=14.59;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:84:748,84,0
chrXI	384618	.	C	A	615	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=16.62;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:69:648,69,0
chrXI	384893	.	C	T	358	PASS	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.37;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:42:391,42,0
chrXI	385019	.	A	G	273	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.75;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,12:12:33:306,33,0
chrXI	385037	.	C	T	223.01	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.78;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,9:9:27:256,27,0
chrXI	385341	.	C	T	702	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=16.33;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:78:735,78,0
chrXI	385346	.	C	T	640	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=15.24;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:72:673,72,0
chrXI	385392	.	A	T	891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.418;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5654;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=0.538;QD=15.36;ReadPosRankSum=1.673;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:924,99,0
chrXI	385419	.	C	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.97;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1228,132,0
chrXI	385432	.	T	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=19.62;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1289,147,0
chrXI	385436	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=20.12;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1321,147,0
chrXI	385473	.	G	A	1160	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=19.66;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1193,129,0
chrXI	385548	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=64;Dels=0.00;FS=3.540;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;MQRankSum=-0.142;QD=19.67;ReadPosRankSum=1.619;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,60:64:99:1292,144,0
chrXI	385609	.	T	G	619	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=11.68;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:75:652,75,0
chrXI	385688	.	G	A	1025	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=21.81;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1058,111,0
chrXI	385892	.	A	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.67;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1834,201,0
chrXI	385928	.	A	C	1823	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.64;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1856,204,0
chrXI	386039	.	T	A	1068	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.270;QD=23.73;ReadPosRankSum=1.655;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1101,117,0
chrXI	386072	.	C	G	871	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.24;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:904,99,0
chrXI	386153	.	A	C	1082	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.64;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1115,120,0
chrXI	386207	.	C	T	1865	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.74;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1898,198,0
chrXI	386520	.	A	C	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.617;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;MQRankSum=1.682;QD=18.16;ReadPosRankSum=1.632;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1286,147,0
chrXI	386669	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=18.10;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1535,174,0
chrXI	387042	.	A	G	998	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.395;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;MQRankSum=-0.617;QD=16.92;ReadPosRankSum=1.674;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1031,117,0
chrXI	387050	.	C	T	881	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.44;MQ0=0;QD=15.73;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:914,99,0
chrXI	387052	.	A	G	866	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=3.332;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.87;MQ0=0;MQRankSum=-1.237;QD=15.19;ReadPosRankSum=1.670;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:899,99,0
chrXI	387069	.	A	G	813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=0.704;QD=12.51;ReadPosRankSum=1.678;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:96:846,96,0
chrXI	387089	.	C	A	960	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=5.3436;MLEAC=2;MLEAF=1.00;MQ=48.37;MQ0=0;QD=12.97;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:993,105,0
chrXI	387148	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=11.2653;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=14.26;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1331,144,0
chrXI	387173	.	T	C	199.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.851;DP=72;Dels=0.00;FS=2.628;HaplotypeScore=41.6372;MLEAC=1;MLEAF=0.500;MQ=56.65;MQ0=0;MQRankSum=-0.580;QD=2.76;ReadPosRankSum=-1.217;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:47,25:72:99:229,0,148
chrXI	387632	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.15;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1185,129,0
chrXI	388001	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7273;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.01;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1684,177,0
chrXI	388314	.	A	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.25;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1568,171,0
chrXI	388522	.	C	T	2759	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.1310;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-1.462e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2792,291,0
chrXI	388737	.	A	G	2042	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=23.20;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2075,222,0
chrXI	388947	.	G	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.7210;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=19.96;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1570,165,0
chrXI	389051	.	A	T	2471	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=21.12;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2504,267,0
chrXI	389074	.	A	G	1752	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.46;MQ0=0;MQRankSum=-2.176;QD=17.70;ReadPosRankSum=2.151;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:2,97:99:99:1785,198,0
chrXI	389081	.	G	A	1300	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=14.94;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1333,144,0
chrXI	389086	.	T	A	1149	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.15;MQ0=0;QD=15.12;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1182,126,0
chrXI	389093	.	T	A	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.122;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;MQRankSum=1.173;QD=13.89;ReadPosRankSum=1.676;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:93:894,93,0
chrXI	389135	.	G	A	374	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=6.56;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,52:57:42:407,42,0
chrXI	389148	.	A	G	344.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.916;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=34.32;MQ0=0;MQRankSum=1.701;QD=3.34;ReadPosRankSum=4.037;SB=-5.700e+02	GT:AD:DP:GQ:PL	0/1:42,61:103:99:374,0,219
chrXI	389150	.	A	T	181.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;DP=109;Dels=0.00;FS=1.570;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=34.27;MQ0=0;MQRankSum=-1.037;QD=1.66;ReadPosRankSum=-5.404;SB=-3.400e+02	GT:AD:DP:GQ:PL	0/1:67,42:109:99:211,0,481
chrXI	389222	.	A	G	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=6.322;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;MQRankSum=0.983;QD=22.45;ReadPosRankSum=2.383;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1717,186,0
chrXI	389298	.	G	A	1851	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=24.36;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1884,195,0
chrXI	389917	.	A	G	1916	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.25;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1949,213,0
chrXI	389926	.	A	G	2105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=1.303;QD=18.63;ReadPosRankSum=1.609;SB=-1.504e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2138,231,0
chrXI	389996	.	C	T	2737	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.6919;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.55;SB=-1.562e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2770,291,0
chrXI	390146	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.33;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1526,168,0
chrXI	390540	.	C	T	1950	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.94;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1983,207,0
chrXI	390583	.	T	C	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=4.437;HaplotypeScore=11.4107;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=1.247;QD=20.95;ReadPosRankSum=1.628;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:1,99:102:99:2170,234,0
chrXI	391017	.	C	T	2107	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.15;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2140,234,0
chrXI	391146	.	G	A	2466	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.26;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2499,264,0
chrXI	391848	.	C	T	2714	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.62;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2747,294,0
chrXI	391885	.	T	C	2766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=15.0284;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-1.130;QD=20.34;ReadPosRankSum=0.732;SB=-1.479e+03	GT:AD:DP:GQ:PL	1/1:2,134:136:99:2799,312,0
chrXI	391941	.	A	G	2921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=4.191;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.825;QD=23.00;ReadPosRankSum=1.677;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:1,125:127:99:2954,327,0
chrXI	392142	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1451;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.20;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1710,189,0
chrXI	392532	.	G	T	2243	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.38;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2276,246,0
chrXI	392694	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5584;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.04;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1331,144,0
chrXI	393129	.	G	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=17.24;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1533,168,0
chrXI	393245	.	G	A	2072	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.55;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2105,234,0
chrXI	393718	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.47;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1887,207,0
chrXI	393770	.	G	A	2109	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.92;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2142,222,0
chrXI	393789	.	G	A	1983	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.10;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2016,213,0
chrXI	394215	.	T	C	1342	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.00;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1375,156,0
chrXI	394329	.	G	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9477;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.93;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1604,183,0
chrXI	394627	.	G	A	2371	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=7.0656;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.80;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2404,249,0
chrXI	394878	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.651;QD=22.11;ReadPosRankSum=1.691;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:1957,213,0
chrXI	394920	.	T	C	2215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.099;QD=23.82;ReadPosRankSum=1.695;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2248,243,0
chrXI	395025	.	A	C	2269	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.1416;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.73;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2302,252,0
chrXI	395041	.	G	A	2315	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.9115;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.29;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2348,243,0
chrXI	395260	.	C	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=17.70;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1608,177,0
chrXI	395283	.	G	A	1597	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=17.17;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1630,171,0
chrXI	395287	.	T	C	1509	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=15.40;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1542,168,0
chrXI	395389	.	C	T	2349	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=14.5917;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=20.79;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2382,255,0
chrXI	395440	.	C	T	1892	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0960;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.13;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1925,210,0
chrXI	395566	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=0.702;QD=17.01;ReadPosRankSum=1.685;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1292,141,0
chrXI	395584	.	G	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=15.93;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1212,129,0
chrXI	395872	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.55;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1499,165,0
chrXI	396028	.	T	A	1453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.127;QD=23.06;ReadPosRankSum=1.567;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1486,156,0
chrXI	396469	.	G	T	2338	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.8570;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.51;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2371,255,0
chrXI	396726	.	C	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.19;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1722,189,0
chrXI	396781	.	G	A	2433	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7064;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.62;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2466,270,0
chrXI	397099	.	T	G	1357	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.39;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1390,150,0
chrXI	397137	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.95;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1587,171,0
chrXI	397277	.	T	C	2702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.644;DP=150;Dels=0.00;FS=21.464;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-1.419;QD=18.01;ReadPosRankSum=4.703;SB=-1.803e+03	GT:AD:DP:GQ:PL	1/1:8,141:150:99:2735,297,0
chrXI	397278	.	T	C	2705	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=18.40;SB=-1.806e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:2738,297,0
chrXI	397635	.	G	A	1653	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5678;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=21.75;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1686,183,0
chrXI	397717	.	C	T	1632	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.66;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,79:83:99:1665,180,0
chrXI	397745	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=16.99;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1341,141,0
chrXI	397947	.	C	T	2022	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.98;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2055,219,0
chrXI	398874	.	C	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=22.47;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1359,147,0
chrXI	398880	.	T	C	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=0.597;QD=20.74;ReadPosRankSum=1.673;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1236,138,0
chrXI	399177	.	G	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.71;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1441,162,0
chrXI	399459	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.11;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1713,180,0
chrXI	399625	.	G	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.73;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1863,195,0
chrXI	399642	.	T	C	1778	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.940;QD=21.95;ReadPosRankSum=2.357;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1811,201,0
chrXI	399858	.	T	C	2146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1178;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.742;QD=21.68;ReadPosRankSum=1.697;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:1,97:99:99:2179,243,0
chrXI	399930	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=17.94;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1432,159,0
chrXI	399941	.	A	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=17.01;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1394,153,0
chrXI	399948	.	T	C	1476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.821;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-1.653;QD=16.77;ReadPosRankSum=1.653;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1509,165,0
chrXI	399987	.	G	A	2439	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.36;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,124:126:99:2472,261,0
chrXI	400068	.	C	T	3300.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.45;SB=-1.690e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3300,360,0
chrXI	400152	.	A	G	1686	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2145;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.81;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1719,189,0
chrXI	400341	.	C	T	2568	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.22;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2601,282,0
chrXI	400503	.	C	A	2196	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.96;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2229,249,0
chrXI	400521	.	G	A	1986	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.35;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2019,219,0
chrXI	401007	.	G	A	2525	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.04;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2558,285,0
chrXI	401019	.	G	A	1945	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.4187;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=20.91;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1978,207,0
chrXI	401736	.	C	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.85;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1701,186,0
chrXI	401769	.	C	G	1622	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.92;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1655,183,0
chrXI	401890	.	C	G	1438	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.25;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1471,162,0
chrXI	403091	.	T	C	2057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.125;QD=20.99;ReadPosRankSum=1.661;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:2090,234,0
chrXI	403407	.	G	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1439,156,0
chrXI	403713	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=18.70;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1174,129,0
chrXI	404302	.	T	C	2484	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.6493;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2517,273,0
chrXI	404344	.	A	G	2360	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9998;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2393,264,0
chrXI	404440	.	C	T	2590	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.33;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2623,279,0
chrXI	404696	.	G	A	3275.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.39;SB=-1.713e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3275,351,0
chrXI	404773	.	G	A	2910	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=14.4708;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.24;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,134:137:99:2943,309,0
chrXI	404905	.	C	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.29;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1417,159,0
chrXI	405007	.	C	T	2297	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.0573;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.88;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2330,243,0
chrXI	405331	.	C	A	1092	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=17.90;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1125,123,0
chrXI	405337	.	G	A	1140	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.39;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1173,126,0
chrXI	405361	.	A	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.04;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1536,168,0
chrXI	405409	.	G	A	2481	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.4874;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.69;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2514,273,0
chrXI	405592	.	G	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.61;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1582,174,0
chrXI	405871	.	C	G	2208	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.08;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,97:100:99:2241,240,0
chrXI	405960	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.31;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1269,141,0
chrXI	406060	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.03;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1331,141,0
chrXI	406069	.	G	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.28;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1344,141,0
chrXI	406357	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=3.475;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.879;QD=21.89;ReadPosRankSum=1.682;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1565,174,0
chrXI	406489	.	A	G	994	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.88;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1027,114,0
chrXI	406558	.	A	G	1267	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1300,147,0
chrXI	406917	.	T	A	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=75;Dels=0.00;FS=2.624;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.150;QD=18.35;ReadPosRankSum=2.350;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1409,156,0
chrXI	407023	.	A	G	2117	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=4.624;HaplotypeScore=9.0787;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.015;QD=24.06;ReadPosRankSum=1.653;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:2150,234,0
chrXI	407067	.	A	G	2507	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.58;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2540,276,0
chrXI	407274	.	A	G	2063	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.18;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2096,225,0
chrXI	407314	.	T	C	2500	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.210;QD=23.36;ReadPosRankSum=1.700;SB=-1.393e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2533,276,0
chrXI	407449	.	A	T	3085	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.0229;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.20;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3118,333,0
chrXI	407572	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.35;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1437,156,0
chrXI	407626	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.08;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1579,171,0
chrXI	407828	.	T	C	1803	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.99;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1836,204,0
chrXI	407876	.	A	G	1069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.617;DP=59;Dels=0.00;FS=4.091;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=-0.382;QD=18.12;ReadPosRankSum=0.558;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1102,102,0
chrXI	408233	.	T	C	976	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.77;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:0,43:47:99:1009,111,0
chrXI	408275	.	T	C	1512	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.370;QD=21.60;ReadPosRankSum=2.380;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1545,174,0
chrXI	408307	.	A	C	1717	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=20.94;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1750,192,0
chrXI	408311	.	G	A	1723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.338;QD=21.01;ReadPosRankSum=0.803;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1756,183,0
chrXI	408636	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5042;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.59;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1680,189,0
chrXI	408960	.	C	G	1442	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1475,165,0
chrXI	409333	.	A	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.3582;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.95;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1284,144,0
chrXI	409377	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1427,156,0
chrXI	410208	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.76;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2013,216,0
chrXI	410346	.	A	G	1976	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.20;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2009,216,0
chrXI	410451	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.99;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1616,174,0
chrXI	410677	.	A	G	2488	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.08;SB=-1.434e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2521,279,0
chrXI	410991	.	A	G	2475	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1756;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.45;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2508,279,0
chrXI	410995	.	T	C	2303	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.554;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.5203;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=1.081;QD=19.35;ReadPosRankSum=1.643;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:1,116:119:99:2336,241,0
chrXI	411118	.	G	A	2869	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.95;SB=-1.611e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2902,303,0
chrXI	411643	.	A	G	2691	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.40;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2724,312,0
chrXI	411802	.	G	T	2901	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.43;SB=-1.366e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2934,303,0
chrXI	412602	.	C	T	2064	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.45;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2097,225,0
chrXI	412694	.	T	A	1800	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.45;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1833,192,0
chrXI	412707	.	G	T	2172	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.09;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2205,237,0
chrXI	412747	.	A	C	2351	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.7694;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=19.27;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2384,261,0
chrXI	412853	.	G	A	2193	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.33;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2226,231,0
chrXI	412918	.	A	G	2106	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.17;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2139,234,0
chrXI	413158	.	A	G	2026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=3.054;HaplotypeScore=11.1156;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.526;QD=19.86;ReadPosRankSum=1.698;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2059,225,0
chrXI	413234	.	A	T	2530	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=117;Dels=0.00;FS=3.086;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.463;QD=21.62;ReadPosRankSum=1.672;SB=-1.474e+03	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2563,270,0
chrXI	413363	.	C	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.57;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1997,207,0
chrXI	413439	.	G	T	2463	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.6887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.91;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2496,258,0
chrXI	413656	.	A	G	2069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=3.297;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.474;QD=21.78;ReadPosRankSum=1.658;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2102,240,0
chrXI	414178	.	C	T	2267	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.13;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2300,240,0
chrXI	414336	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.3322;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.32;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1824,201,0
chrXI	414399	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.57;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1848,204,0
chrXI	414952	.	G	A	1989	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.86;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2022,216,0
chrXI	415240	.	G	A	1705	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=21.31;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1738,189,0
chrXI	415291	.	T	C	1917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=8.798;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;MQRankSum=-0.841;QD=18.98;ReadPosRankSum=2.377;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:2,99:101:99:1950,222,0
chrXI	415294	.	G	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.72;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1980,219,0
chrXI	415542	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.38;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1389,150,0
chrXI	416188	.	T	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1407,156,0
chrXI	416349	.	A	T	1543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=9.3229;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=1.684;QD=21.43;ReadPosRankSum=-0.577;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1576,168,0
chrXI	416398	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1495,168,0
chrXI	416779	.	G	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.24;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1541,165,0
chrXI	417200	.	T	A	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=-1.463;QD=18.65;ReadPosRankSum=1.698;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1954,210,0
chrXI	417206	.	A	G	2068	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.15;SB=-1.409e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2101,231,0
chrXI	417757	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.12;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1596,174,0
chrXI	417781	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.11;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1260,144,0
chrXI	418093	.	T	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.44;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1384,147,0
chrXI	419090	.	A	G	1028	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.04;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1061,120,0
chrXI	419638	.	G	A	1280	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.07;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1313,138,0
chrXI	419887	.	T	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.8537;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.71;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1668,180,0
chrXI	420060	.	G	A	2113	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2146,225,0
chrXI	420485	.	T	C	1519	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.81;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1552,168,0
chrXI	421142	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2428;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.11;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1962,210,0
chrXI	422295	.	A	T	1863	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.47;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1896,207,0
chrXI	423344	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.6844;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.59;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1350,150,0
chrXI	423496	.	A	T	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7268;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.755;QD=19.10;ReadPosRankSum=1.643;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1523,168,0
chrXI	423977	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.56;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1308,144,0
chrXI	424151	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.19;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1495,156,0
chrXI	424277	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=17.45;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1115,129,0
chrXI	424283	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.33;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1125,123,0
chrXI	424564	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.49;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1436,150,0
chrXI	424709	.	T	C	1065	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.88;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1098,123,0
chrXI	424739	.	G	T	929	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.87;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:962,102,0
chrXI	424829	.	C	T	1499	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.04;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1532,162,0
chrXI	425593	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.750;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.148;QD=17.60;ReadPosRankSum=1.690;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1511,165,0
chrXI	425594	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.34;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1555,165,0
chrXI	426107	.	T	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.16;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1142,123,0
chrXI	426295	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.98;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1286,135,0
chrXI	426559	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.722;QD=20.72;ReadPosRankSum=1.684;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1525,174,0
chrXI	426568	.	C	T	1600	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=21.33;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1633,177,0
chrXI	427165	.	G	A	2234	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=26.28;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2267,234,0
chrXI	427367	.	A	G	1592	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.162;QD=18.30;ReadPosRankSum=1.691;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:1625,180,0
chrXI	427643	.	A	T	1917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.6518;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.689;QD=23.38;ReadPosRankSum=1.689;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1950,216,0
chrXI	428081	.	C	G	2232	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.11;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2265,246,0
chrXI	428291	.	G	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.66;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1415,159,0
chrXI	429190	.	T	C	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=47;Dels=0.00;FS=2.943;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-1.133;QD=18.32;ReadPosRankSum=2.345;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:99:894,99,0
chrXI	429257	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2468;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.59;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1130,126,0
chrXI	429269	.	C	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=17.52;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1137,126,0
chrXI	429832	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.50;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1537,165,0
chrXI	429856	.	C	T	1879	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9120;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.78;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1912,201,0
chrXI	429958	.	C	T	1714	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.49;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1747,183,0
chrXI	430806	.	A	T	1735	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=22.83;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1768,186,0
chrXI	430859	.	T	C	2236	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.29;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2269,249,0
chrXI	430903	.	G	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5594;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.68;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1863,201,0
chrXI	431405	.	G	T	1872	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.4151;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=22.02;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1905,201,0
chrXI	431506	.	T	A	2165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.116;DP=107;Dels=0.00;FS=2.650;HaplotypeScore=101.0881;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;MQRankSum=0.150;QD=20.23;ReadPosRankSum=1.760;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2198,237,0
chrXI	431610	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.30;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1312,147,0
chrXI	431684	.	C	T	734	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=49.18;MQ0=0;QD=12.88;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:81:767,81,0
chrXI	431700	.	C	T	625	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.77;MQ0=0;QD=12.76;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:72:658,72,0
chrXI	431704	.	A	G	716	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=13.77;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:749,84,0
chrXI	431740	.	C	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=15.59;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1202,132,0
chrXI	432094	.	A	T	1127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-1.667;QD=21.26;ReadPosRankSum=1.602;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1160,123,0
chrXI	432569	.	C	G	920	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=6;QD=21.90;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:953,102,0
chrXI	432748	.	A	G	2848	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=-1.146;QD=21.91;ReadPosRankSum=1.679;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:1,129:130:99:2881,318,0
chrXI	432872	.	G	A	681	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.61;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:714,81,0
chrXI	432873	.	A	G	714	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=16.60;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:81:747,81,0
chrXI	432997	.	G	A	2113	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=23.22;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2146,222,0
chrXI	433506	.	C	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.11;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1360,144,0
chrXI	433525	.	A	G	1470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.512;QD=20.14;ReadPosRankSum=1.683;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:99:1503,165,0
chrXI	433630	.	T	C	1349	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.11;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1382,150,0
chrXI	433660	.	G	A	1427	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.03;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1460,159,0
chrXI	433721	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8824;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.62;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1249,135,0
chrXI	433722	.	T	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.91;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1269,135,0
chrXI	433806	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.472;QD=16.20;ReadPosRankSum=1.689;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1329,147,0
chrXI	434001	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.71;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1669,177,0
chrXI	434188	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.01;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1374,150,0
chrXI	434756	.	A	G	1897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.346;QD=19.97;ReadPosRankSum=1.696;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1930,210,0
chrXI	434977	.	A	G	1002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=49;Dels=0.00;FS=2.317;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.235;QD=20.45;ReadPosRankSum=0.980;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:3,45:49:94:1035,94,0
chrXI	435208	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.14;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1649,180,0
chrXI	436814	.	G	A	2476	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.9929;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.76;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2509,270,0
chrXI	436933	.	A	T	3614.01	PASS	AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.01;SB=-1.811e+03	GT:AD:DP:GQ:PL	1/1:0,172:172:99:3614,390,0
chrXI	436938	.	T	G	3101	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.39;SB=-1.743e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:3134,351,0
chrXI	437047	.	T	C	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.507;QD=19.87;ReadPosRankSum=1.690;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1662,186,0
chrXI	437157	.	G	A	2762	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.10;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2795,294,0
chrXI	437307	.	A	G	1492	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.62;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1525,162,0
chrXI	437430	.	T	G	1889	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1922,210,0
chrXI	437524	.	T	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.19;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1474,162,0
chrXI	437798	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.949;QD=18.11;ReadPosRankSum=2.296;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1192,135,0
chrXI	438455	.	C	G	675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.998;QD=20.45;ReadPosRankSum=0.998;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:78:708,78,0
chrXI	438469	.	C	T	578	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.52;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:66:611,66,0
chrXI	439278	.	A	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.78;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1235,141,0
chrXI	439411	.	A	T	1728	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1761,189,0
chrXI	439704	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=23.10;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1696,183,0
chrXI	439977	.	T	A	591	filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=11.4983;MLEAC=2;MLEAF=1.00;MQ=38.34;MQ0=0;QD=10.37;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:66:624,66,0
chrXI	440171	.	G	A	172.03	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=10.75;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,16:16:24:205,24,0
chrXI	440174	.	A	T	45.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.067;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.762;QD=5.11;ReadPosRankSum=1.666;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,7:9:9:78,9,0
chrXI	440270	.	C	T	1390	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=26.73;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1423,150,0
chrXI	440381	.	A	T	2120	filter	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.17;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2153,231,0
chrXI	440556	.	G	A	2190	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.12;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2223,231,0
chrXI	440578	.	C	T	2189	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.89;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2222,231,0
chrXI	441526	.	A	G	1577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=5.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.353;QD=24.64;ReadPosRankSum=1.624;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1610,174,0
chrXI	442264	.	G	A	1664	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.61;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1697,183,0
chrXI	442302	.	T	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.13;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1556,171,0
chrXI	442829	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.53;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1614,171,0
chrXI	443013	.	T	A	872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=3.590;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.217;QD=17.80;ReadPosRankSum=1.516;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:905,99,0
chrXI	443079	.	G	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.06;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1855,201,0
chrXI	443215	.	C	G	1191	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.90;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1224,135,0
chrXI	443450	.	A	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.40;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1437,153,0
chrXI	443630	.	T	C	866	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.04;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:899,102,0
chrXI	444491	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1286,135,0
chrXI	445144	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1356,144,0
chrXI	445342	.	T	C	1422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.319;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.3725;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.233;QD=20.91;ReadPosRankSum=-0.026;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1455,143,0
chrXI	445854	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.62;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1308,144,0
chrXI	446016	.	C	G	1625	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.96;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1658,186,0
chrXI	446566	.	G	A	1215	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.98;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1248,138,0
chrXI	446892	.	A	G	1681	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=71;Dels=0.00;FS=4.771;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.377;QD=23.68;ReadPosRankSum=1.682;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1714,183,0
chrXI	447051	.	A	G	2009	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.50;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2042,222,0
chrXI	447079	.	T	C	2245	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.39;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2278,255,0
chrXI	447188	.	T	C	1612	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1645,180,0
chrXI	447730	.	T	C	1839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=-1.047;QD=20.21;ReadPosRankSum=1.656;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1872,210,0
chrXI	448100	.	T	C	1186	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=16.70;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1219,135,0
chrXI	448103	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.44;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1250,138,0
chrXI	448135	.	C	T	1646	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.66;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1679,180,0
chrXI	448291	.	T	C	1045	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=47.11;MQ0=0;QD=11.74;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1078,120,0
chrXI	448340	.	C	A	2378	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=19.49;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2411,252,0
chrXI	448425	.	C	T	1934	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.17;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1967,204,0
chrXI	448481	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.86;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1432,159,0
chrXI	448511	.	G	C	1184	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=18.50;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1217,138,0
chrXI	448780	.	G	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.57;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,83:87:99:1910,204,0
chrXI	448883	.	T	C	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=67;Dels=0.00;FS=3.012;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.056;QD=19.97;ReadPosRankSum=2.375;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:99:1371,150,0
chrXI	449097	.	T	C	924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;MQRankSum=-0.035;QD=18.86;ReadPosRankSum=1.591;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:957,108,0
chrXI	449124	.	C	T	1344	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=17.45;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1377,150,0
chrXI	449136	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=18.59;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1483,162,0
chrXI	449167	.	C	T	1738	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.98;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1771,189,0
chrXI	449192	.	T	C	1690	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.88;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1723,189,0
chrXI	449253	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.835;DP=67;Dels=0.00;FS=10.719;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.288;QD=19.43;ReadPosRankSum=2.653;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:3,64:67:99:1335,144,0
chrXI	449495	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.78;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1124,120,0
chrXI	449509	.	A	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=16.70;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1269,135,0
chrXI	449753	.	C	T	1478	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.74;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1511,162,0
chrXI	450210	.	C	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.49;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1748,183,0
chrXI	450921	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.680;QD=18.28;ReadPosRankSum=1.365;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1258,141,0
chrXI	450942	.	A	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=16.06;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1077,120,0
chrXI	450979	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.08;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1218,132,0
chrXI	451012	.	G	T	1113	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.61;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1146,120,0
chrXI	451133	.	A	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.65;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1039,114,0
chrXI	452719	.	C	G	1900	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.62;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1933,222,0
chrXI	452927	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.06;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1798,189,0
chrXI	453082	.	C	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.96;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1686,174,0
chrXI	453106	.	A	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.43;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1426,156,0
chrXI	453136	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.912;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.678;QD=21.06;ReadPosRankSum=1.678;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1381,150,0
chrXI	453381	.	T	C	1265	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.77;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1298,147,0
chrXI	453612	.	T	C	1759	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=26.25;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1792,195,0
chrXI	454007	.	A	G	2089	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=21.76;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2122,231,0
chrXI	454018	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=19.84;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1600,180,0
chrXI	454594	.	T	C	2138	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.86;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2171,234,0
chrXI	455741	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.07;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1378,153,0
chrXI	455753	.	T	G	1403	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.94;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1436,156,0
chrXI	455903	.	A	C	1641	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.18;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1674,189,0
chrXI	456074	.	A	G	1005	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.174;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.064;QD=18.61;ReadPosRankSum=1.668;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1038,117,0
chrXI	456602	.	A	G	806	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.15;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:839,93,0
chrXI	456734	.	A	G	919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.8419;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.760;QD=15.32;ReadPosRankSum=1.672;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,56:60:99:952,105,0
chrXI	456866	.	T	C	720	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.36;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:753,84,0
chrXI	457022	.	A	G	653	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=17.65;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:78:686,78,0
chrXI	457446	.	C	T	2340	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.64;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2373,255,0
chrXI	457465	.	G	C	2100	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.04;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.00;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2133,231,0
chrXI	457466	.	G	A	2141	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=21.41;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2174,231,0
chrXI	457579	.	C	A	2500	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.27;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2533,270,0
chrXI	457680	.	C	T	1888	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=24.21;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1921,201,0
chrXI	457702	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.14;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1649,186,0
chrXI	457721	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.42;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1832,201,0
chrXI	457806	.	G	T	2614	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=21.97;SB=-1.543e+03	GT:AD:DP:GQ:PL	1/1:0,115:119:99:2647,276,0
chrXI	457807	.	G	C	2418	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=20.49;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2451,276,0
chrXI	457996	.	A	T	2223	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.40;MQ0=0;QD=23.40;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2256,243,0
chrXI	458008	.	A	G	2171	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=22.85;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2204,243,0
chrXI	458141	.	G	T	137.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=1.423;QD=11.42;ReadPosRankSum=0.791;SB=-5.768e-02	GT:AD:DP:GQ:PL	1/1:1,10:12:21:170,21,0
chrXI	458525	.	T	C	1078	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=12.83;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1111,126,0
chrXI	458693	.	T	C	2380	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=19.83;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2413,270,0
chrXI	458781	.	C	T	2864	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=23.48;SB=-1.582e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2897,315,0
chrXI	459142	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.10;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1504,171,0
chrXI	459151	.	A	T	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=4.533;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=-0.708;QD=19.10;ReadPosRankSum=-1.147;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1389,153,0
chrXI	459200	.	C	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=17.54;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1226,132,0
chrXI	459364	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.55;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1589,171,0
chrXI	459492	.	G	A	2078	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.16;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2111,228,0
chrXI	459579	.	A	G	1392	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.59;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1425,159,0
chrXI	459630	.	C	T	1854	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=24.39;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1887,198,0
chrXI	459646	.	A	C	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=71;Dels=0.00;FS=4.834;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.940;QD=21.52;ReadPosRankSum=1.683;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1561,168,0
chrXI	459985	.	T	C	2003	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=22.01;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2036,225,0
chrXI	460324	.	C	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=16.27;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,79:83:99:1383,144,0
chrXI	460331	.	C	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=15.84;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1205,135,0
chrXI	460360	.	T	C	722	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=9.63;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:84:755,84,0
chrXI	460364	.	C	T	771	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=10.56;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:84:804,84,0
chrXI	460537	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.39;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1616,180,0
chrXI	460880	.	T	A	2669	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.81;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2702,282,0
chrXI	461157	.	T	G	2131	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.49;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2164,243,0
chrXI	461216	.	C	T	2205	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8218;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.05;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,95:100:99:2238,234,0
chrXI	461500	.	A	C	2175	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.3120;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.66;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2208,246,0
chrXI	461628	.	G	A	2479	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.95;SB=-1.422e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2512,258,0
chrXI	462312	.	T	C	1242	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.84;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1275,141,0
chrXI	462364	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.11;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1218,129,0
chrXI	462376	.	A	G	1127	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=16.82;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1160,129,0
chrXI	462442	.	G	A	1417	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.47;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1450,153,0
chrXI	462513	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.97;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1331,147,0
chrXI	462779	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.15;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1449,153,0
chrXI	462789	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=17.00;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1325,144,0
chrXI	462819	.	G	A	1002	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=13.36;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:75:99:1035,111,0
chrXI	462985	.	T	A	551	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.68;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:63:584,63,0
chrXI	463472	.	T	A	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.834;QD=20.39;ReadPosRankSum=1.540;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1134,123,0
chrXI	463630	.	T	C	955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.847;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.478;QD=16.47;ReadPosRankSum=1.613;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:988,111,0
chrXI	463660	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=18.71;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1305,138,0
chrXI	463936	.	T	C	1349	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.4613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1382,153,0
chrXI	464063	.	A	C	840	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.50;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:873,99,0
chrXI	468315	.	A	T	1776	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=88;Dels=0.00;FS=4.619;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-0.371;QD=20.18;ReadPosRankSum=1.691;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1809,195,0
chrXI	468581	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.95;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1146,123,0
chrXI	468702	.	C	T	1604	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.87;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1637,174,0
chrXI	468708	.	G	A	1449	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=16.47;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1482,159,0
chrXI	468710	.	G	T	1419	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=16.12;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1452,159,0
chrXI	469182	.	T	C	1967	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.93;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2000,222,0
chrXI	469423	.	C	T	3669.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.04;FS=0.000;HaplotypeScore=15.3347;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=22.37;SB=-2.030e+03	GT:AD:DP:GQ:PL	1/1:0,158:158:99:3669,390,0
chrXI	469719	.	G	C	3202	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.08;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,141:145:99:3235,357,0
chrXI	469831	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.94;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1393,147,0
chrXI	471993	.	G	A	865	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.02;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:898,93,0
chrXI	472945	.	C	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0175;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.14;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1893,204,0
chrXI	473057	.	C	T	3131	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=11.5652;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.74;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3164,336,0
chrXI	473351	.	G	A	3491.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=9.8391;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=22.52;SB=-1.568e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:3491,378,0
chrXI	473414	.	G	A	2285	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=19.36;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2318,255,0
chrXI	473416	.	C	T	2199	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;QD=19.63;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,108:112:99:2232,234,0
chrXI	473427	.	G	A	1857	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.39;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1890,207,0
chrXI	473465	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=77;Dels=0.00;FS=9.738;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=-0.408;QD=17.25;ReadPosRankSum=2.909;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1361,150,0
chrXI	473531	.	G	T	1690	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.15;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1723,180,0
chrXI	473650	.	G	A	2298	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=8.1469;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=22.31;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2331,246,0
chrXI	473718	.	C	T	1745	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.37;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1778,186,0
chrXI	474169	.	C	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.18;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1447,150,0
chrXI	474932	.	A	G	1307	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2257;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.80;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1340,144,0
chrXI	475195	.	C	T	1485	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.34;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1518,162,0
chrXI	475565	.	T	C	806	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.45;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:93:839,93,0
chrXI	476391	.	T	C	1133	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.19;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1166,129,0
chrXI	476611	.	T	A	2306	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.530;QD=23.53;ReadPosRankSum=1.661;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2339,249,0
chrXI	477203	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.91;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1725,198,0
chrXI	477574	.	C	T	1199	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.03;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1232,135,0
chrXI	478598	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.50;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1113,120,0
chrXI	478643	.	G	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.42;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1425,150,0
chrXI	479163	.	C	G	1356	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.87;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1389,153,0
chrXI	479195	.	T	C	981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=4.232;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.686;QD=18.17;ReadPosRankSum=1.667;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:99:1014,114,0
chrXI	479521	.	A	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.22;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1144,129,0
chrXI	480055	.	G	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.61;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1336,144,0
chrXI	480386	.	A	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.86;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1391,153,0
chrXI	480455	.	A	C	1127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.466;QD=17.08;ReadPosRankSum=1.572;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1160,132,0
chrXI	481321	.	A	T	1535	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.62;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1568,165,0
chrXI	482428	.	T	C	2423	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.89;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2456,270,0
chrXI	483350	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.637;QD=21.30;ReadPosRankSum=1.685;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1588,174,0
chrXI	483614	.	G	A	2106	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.5983;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=21.49;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2139,231,0
chrXI	483858	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.66;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1679,174,0
chrXI	484474	.	C	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.12;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1849,201,0
chrXI	485189	.	C	A	2495	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.54;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2528,270,0
chrXI	486275	.	C	T	1811	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.56;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1844,198,0
chrXI	486704	.	A	G	2286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.021;QD=20.41;ReadPosRankSum=1.670;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2319,261,0
chrXI	486922	.	A	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1611,171,0
chrXI	487238	.	G	T	2069	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.51;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2102,219,0
chrXI	487439	.	A	G	2616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=126;Dels=0.00;FS=3.035;HaplotypeScore=15.3964;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.010;QD=20.76;ReadPosRankSum=2.410;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:2,122:126:99:2649,291,0
chrXI	487626	.	C	T	2199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;MQRankSum=-0.808;QD=20.94;ReadPosRankSum=-0.346;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2232,215,0
chrXI	487631	.	G	A	2123	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.84;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2156,231,0
chrXI	488186	.	A	G	2749	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.5339;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.72;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2782,312,0
chrXI	490112	.	G	T	1778	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.44;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1811,198,0
chrXI	490945	.	T	A	1242	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.36;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1275,135,0
chrXI	490946	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=5.952;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.137;QD=19.40;ReadPosRankSum=1.622;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1255,138,0
chrXI	494622	.	T	A	2051	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.79;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2084,219,0
chrXI	495987	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7919;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.80;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1515,165,0
chrXI	496295	.	A	G	2396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8487;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.698;QD=23.49;ReadPosRankSum=0.600;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2429,261,0
chrXI	497870	.	A	G	1469	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.69;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1502,168,0
chrXI	499489	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=91;Dels=0.00;FS=5.393;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.693;QD=23.14;ReadPosRankSum=1.694;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2139,228,0
chrXI	499993	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.831;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.878;QD=20.44;ReadPosRankSum=1.685;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1525,171,0
chrXI	499999	.	A	G	1733	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.8730;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.13;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1766,195,0
chrXI	500019	.	C	T	2039	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.69;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2072,219,0
chrXI	500061	.	T	A	2928	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.9286;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.06;SB=-1.699e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2961,306,0
chrXI	500101	.	A	G	3509.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=156;Dels=0.00;FS=10.089;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.981;QD=22.49;ReadPosRankSum=1.227;SB=-1.827e+03	GT:AD:DP:GQ:PL	1/1:3,152:156:99:3509,368,0
chrXI	500136	.	C	A	2822	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.22;SB=-1.666e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2855,306,0
chrXI	500262	.	C	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.26;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1658,177,0
chrXI	500383	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=4.075;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.029;QD=18.81;ReadPosRankSum=1.682;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1331,144,0
chrXI	500926	.	G	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.65;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1301,141,0
chrXI	501115	.	C	T	2023	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.73;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2056,225,0
chrXI	501178	.	T	C	2039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.010;DP=95;Dels=0.00;FS=9.967;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.178;QD=21.46;ReadPosRankSum=4.380;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:7,88:95:99:2072,225,0
chrXI	501241	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.91;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1912,210,0
chrXI	501250	.	T	A	1713	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.25;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1746,183,0
chrXI	501319	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=70;Dels=0.00;FS=6.340;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-1.533;QD=19.66;ReadPosRankSum=2.380;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1409,159,0
chrXI	501392	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.35;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1754,192,0
chrXI	501710	.	A	G	1978	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.74;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2011,225,0
chrXI	501881	.	A	G	2630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.894;QD=21.21;ReadPosRankSum=1.704;SB=-1.455e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2663,288,0
chrXI	501944	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.49;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1816,195,0
chrXI	501970	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.80;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1330,147,0
chrXI	502040	.	T	C	1465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.900;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.663;QD=18.09;ReadPosRankSum=1.689;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1498,165,0
chrXI	502603	.	A	G	1120	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1153,129,0
chrXI	502693	.	C	T	885	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.35;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:918,102,0
chrXI	502906	.	A	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.01;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1834,198,0
chrXI	503144	.	A	T	1599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.261;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5051;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.685;QD=21.90;ReadPosRankSum=1.685;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1632,174,0
chrXI	503229	.	G	A	2107	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.5450;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.07;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2140,231,0
chrXI	503357	.	A	G	998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.438;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=-0.479;QD=21.23;ReadPosRankSum=1.659;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1031,111,0
chrXI	503387	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.20;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1358,141,0
chrXI	503396	.	G	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.47;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1400,153,0
chrXI	503618	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.54;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1358,144,0
chrXI	503732	.	G	A	1880	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.50;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1913,201,0
chrXI	504179	.	A	G	2110	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.89;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2143,231,0
chrXI	505031	.	C	T	2658	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.34;SB=-1.470e+03	GT:AD:DP:GQ:PL	1/1:0,114:119:99:2691,282,0
chrXI	505121	.	T	A	2297	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.93;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2330,243,0
chrXI	505177	.	T	C	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;MQRankSum=1.125;QD=21.57;ReadPosRankSum=2.388;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1759,195,0
chrXI	505462	.	A	G	2033	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.65;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2066,225,0
chrXI	505493	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1703;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=17.42;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1392,150,0
chrXI	505505	.	A	G	1080	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.30;MQ0=0;QD=14.59;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1113,120,0
chrXI	505511	.	G	A	1066	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.55;MQ0=0;QD=13.84;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1099,120,0
chrXI	505526	.	G	T	1138	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5016;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=15.59;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1171,123,0
chrXI	505559	.	C	T	1281	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=17.79;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1314,135,0
chrXI	505564	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.04;MQ0=0;QD=16.89;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1266,138,0
chrXI	505640	.	G	A	1374	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.91;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1407,147,0
chrXI	505715	.	C	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.22;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1744,186,0
chrXI	505817	.	C	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.46;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1337,141,0
chrXI	506135	.	C	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=21.20;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1432,153,0
chrXI	506614	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.54;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1108,123,0
chrXI	506874	.	T	A	660	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=9.2628;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=13.20;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:75:693,75,0
chrXI	507227	.	T	G	998	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.59;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1031,111,0
chrXI	507254	.	G	A	924	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=3.5305;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.49;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:957,102,0
chrXI	507344	.	A	G	1067	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.13;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1100,126,0
chrXI	507512	.	C	T	749	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.03;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:81:782,81,0
chrXI	507521	.	A	G	672	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=19.20;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:705,78,0
chrXI	507844	.	A	G	1918	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.59;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1951,213,0
chrXI	507899	.	C	G	1282	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.2340;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.49;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1315,141,0
chrXI	507925	.	C	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.63;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1391,150,0
chrXI	507968	.	A	G	1180	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.07;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1213,135,0
chrXI	508472	.	G	A	2363	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.8944;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.73;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2396,255,0
chrXI	508533	.	C	T	2572	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.17;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2605,270,0
chrXI	508894	.	T	C	1635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.424;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.433;QD=18.58;ReadPosRankSum=1.693;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1668,183,0
chrXI	508942	.	C	T	1885	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.27;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1918,213,0
chrXI	509442	.	T	G	1692	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.0888;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=18.19;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1725,189,0
chrXI	509718	.	T	A	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.879;QD=18.78;ReadPosRankSum=1.572;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1254,129,0
chrXI	509797	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=13.91;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1396,153,0
chrXI	509825	.	C	T	1626	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2371;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.30;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1659,183,0
chrXI	509930	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=13.89;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1283,141,0
chrXI	509944	.	A	G	1420	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.1414;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=15.11;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1453,159,0
chrXI	510028	.	T	C	1551	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.68;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1584,174,0
chrXI	510202	.	C	T	1465	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.63;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1498,165,0
chrXI	510755	.	A	T	1422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;DP=74;Dels=0.01;FS=6.001;HaplotypeScore=10.7745;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.236;QD=19.22;ReadPosRankSum=2.821;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:3,70:73:99:1455,156,0
chrXI	510872	.	G	T	2282	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.53;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2315,246,0
chrXI	510905	.	C	T	2601	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.25;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2634,276,0
chrXI	511075	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.05;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1196,129,0
chrXI	511087	.	A	G	1130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;DP=66;Dels=0.00;FS=9.288;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.369;QD=17.12;ReadPosRankSum=3.235;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:4,61:66:99:1163,132,0
chrXI	511186	.	A	G	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;MQRankSum=-1.005;QD=19.63;ReadPosRankSum=1.518;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1623,180,0
chrXI	511303	.	T	C	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=5.288;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.520;QD=18.70;ReadPosRankSum=1.697;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1866,210,0
chrXI	511327	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.26;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1654,183,0
chrXI	511387	.	G	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.81;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1312,141,0
chrXI	511693	.	T	C	439	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=16.88;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:51:472,51,0
chrXI	511838	.	A	T	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.048;QD=17.78;ReadPosRankSum=2.386;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1420,150,0
chrXI	511926	.	T	A	1085	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.09;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1118,114,0
chrXI	512200	.	T	C	1041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.177;QD=21.24;ReadPosRankSum=1.662;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1074,120,0
chrXI	518114	.	T	C	551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.898;DP=89;Dels=0.01;FS=47.647;HaplotypeScore=36.2769;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=1;MQRankSum=5.038;QD=6.19;ReadPosRankSum=-0.755;SB=-1.490e+02	GT:AD:DP:GQ:PL	1/1:25,63:88:75:584,75,0
chrXI	518221	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.56;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1494,162,0
chrXI	522994	.	C	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.51;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1087,114,0
chrXI	523140	.	T	C	1735	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.17;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1768,189,0
chrXI	523152	.	A	C	1727	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=92;Dels=0.00;FS=5.611;HaplotypeScore=5.8620;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.300;QD=18.77;ReadPosRankSum=2.790;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:3,88:92:99:1760,192,0
chrXI	523718	.	G	A	927	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=16.26;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:960,102,0
chrXI	524076	.	C	T	42.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.274;DP=91;Dels=0.00;FS=71.980;HaplotypeScore=12.0893;MLEAC=1;MLEAF=0.500;MQ=56.83;MQ0=0;MQRankSum=-1.797;QD=0.46;ReadPosRankSum=-5.913;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,24:91:72:72,0,969
chrXI	531608	.	C	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.8725;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.16;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1700,180,0
chrXI	532016	.	T	C	1956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=92;Dels=0.00;FS=2.969;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.528;QD=21.26;ReadPosRankSum=2.396;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:2,89:92:99:1989,213,0
chrXI	532388	.	G	C	1675	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.18;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1708,195,0
chrXI	532520	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.434;QD=20.67;ReadPosRankSum=1.695;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1976,200,0
chrXI	532628	.	C	T	2329	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.2991;MLEAC=2;MLEAF=1.00;MQ=60.75;MQ0=0;QD=23.29;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2362,249,0
chrXI	533140	.	G	A	1708	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.0394;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.58;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1741,180,0
chrXI	533381	.	C	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.12;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1563,171,0
chrXI	533474	.	T	C	1087	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=15.53;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1120,123,0
chrXI	533475	.	G	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=16.60;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1245,138,0
chrXI	533844	.	A	T	1938	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.7206;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.82;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1971,216,0
chrXI	534054	.	T	C	1697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.156;QD=20.95;ReadPosRankSum=2.388;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1730,195,0
chrXI	534309	.	C	T	1140	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.32;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1173,129,0
chrXI	535201	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.89;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1035,114,0
chrXI	535267	.	C	T	866	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.34;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:899,93,0
chrXI	535579	.	G	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.39;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1399,153,0
chrXI	535712	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=16.57;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1143,126,0
chrXI	536693	.	G	A	1958	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.31;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1991,213,0
chrXI	536945	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.29;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1663,180,0
chrXI	537672	.	G	A	2833	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8622;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.61;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2866,300,0
chrXI	537837	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.21;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1387,150,0
chrXI	537898	.	G	C	1566	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.64;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1599,174,0
chrXI	537993	.	C	T	2262	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.6043;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.75;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2295,243,0
chrXI	538129	.	C	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.24;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2157,231,0
chrXI	538650	.	C	A	2254	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.7273;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.95;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2287,246,0
chrXI	538933	.	G	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.82;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1748,180,0
chrXI	539120	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1462,162,0
chrXI	539661	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.84;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1256,135,0
chrXI	539877	.	A	G	1754	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.78;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1787,195,0
chrXI	540097	.	C	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.34;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1284,144,0
chrXI	540251	.	G	A	981	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.24;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1014,108,0
chrXI	540879	.	G	A	1445	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.01;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1478,162,0
chrXI	540885	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.79;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1456,156,0
chrXI	540904	.	G	A	1398	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.64;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1431,150,0
chrXI	540946	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=19.42;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1295,135,0
chrXI	541941	.	G	C	913	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.29;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:946,105,0
chrXI	542085	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.31;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1269,135,0
chrXI	542252	.	T	C	863	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:896,99,0
chrXI	542349	.	A	G	836	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.5103;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.58;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:869,99,0
chrXI	542352	.	C	T	886	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.9512;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=19.69;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:919,99,0
chrXI	542597	.	T	C	615	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=14.30;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:648,72,0
chrXI	542924	.	G	C	1305	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.12;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1338,150,0
chrXI	543203	.	G	A	1001	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.56;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1034,108,0
chrXI	543396	.	C	T	1344	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.06;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1377,144,0
chrXI	543728	.	C	T	863	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.76;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:896,99,0
chrXI	543766	.	T	C	797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=48;Dels=0.00;FS=15.799;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.065;QD=16.60;ReadPosRankSum=2.768;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:3,45:48:90:830,90,0
chrXI	543951	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.179;QD=22.47;ReadPosRankSum=1.553;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1336,144,0
chrXI	544019	.	C	T	1509	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1542,162,0
chrXI	544124	.	A	T	1509	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.52;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1542,168,0
chrXI	544374	.	A	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.75;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1708,183,0
chrXI	544580	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.25;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1248,138,0
chrXI	544682	.	C	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.64;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1215,126,0
chrXI	544698	.	G	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=16.84;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1111,120,0
chrXI	544856	.	G	T	2246	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.39;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2279,243,0
chrXI	545136	.	C	G	1930	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.21;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1963,210,0
chrXI	545148	.	C	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.34;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1904,210,0
chrXI	545405	.	T	C	1655	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.78;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1688,183,0
chrXI	545416	.	G	A	1643	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.8916;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.54;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1676,177,0
chrXI	545874	.	C	T	1028	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.84;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1061,114,0
chrXI	545963	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=2.822;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=1.440;QD=22.97;ReadPosRankSum=2.375;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1549,168,0
chrXI	546387	.	C	A	1760	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.00;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1793,192,0
chrXI	546403	.	G	A	1702	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.02;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1735,186,0
chrXI	546444	.	G	A	1529	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=20.12;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1562,165,0
chrXI	546727	.	T	C	2160	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.98;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2193,240,0
chrXI	546936	.	C	T	1218	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.75;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1251,135,0
chrXI	547133	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.945;QD=20.71;ReadPosRankSum=1.575;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1400,150,0
chrXI	547332	.	C	A	2112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.118;DP=88;Dels=0.00;FS=4.260;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.512;QD=24.00;ReadPosRankSum=1.693;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2145,212,0
chrXI	547855	.	T	C	1543	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4846;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.73;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1576,174,0
chrXI	547921	.	C	A	1828	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.31;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1861,195,0
chrXI	548064	.	C	T	3805.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.49;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3805,417,0
chrXI	548122	.	G	A	2918	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.7513;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.53;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2951,312,0
chrXI	548175	.	A	G	2146	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.12;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2179,237,0
chrXI	548301	.	A	C	2788	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.5255;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.78;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2821,303,0
chrXI	548668	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.86;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1541,162,0
chrXI	548697	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.9337;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.555;QD=20.20;ReadPosRankSum=1.421;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1649,180,0
chrXI	548841	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.94;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1744,189,0
chrXI	549098	.	T	A	2792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.133;QD=23.66;ReadPosRankSum=1.703;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2825,294,0
chrXI	549132	.	A	C	2592	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.34;SB=-1.331e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2625,282,0
chrXI	549137	.	C	T	2548	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=20.72;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2581,279,0
chrXI	549235	.	T	G	1732	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.49;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1765,201,0
chrXI	549266	.	G	A	2060	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.39;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2093,228,0
chrXI	549422	.	G	A	3230.05	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.75;SB=-1.817e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3263,342,0
chrXI	549464	.	A	C	2087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=81.0735;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.268;QD=21.30;ReadPosRankSum=1.625;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:2120,231,0
chrXI	549543	.	G	A	2055	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.62;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2088,216,0
chrXI	549575	.	C	T	2056	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.91;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2089,219,0
chrXI	550068	.	T	C	805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.927;QD=17.89;ReadPosRankSum=1.652;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:1,43:45:93:838,93,0
chrXI	550278	.	C	T	972	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.13;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1005,108,0
chrXI	550302	.	A	G	1053	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.40;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1086,120,0
chrXI	550343	.	A	G	1223	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.38;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1256,144,0
chrXI	550500	.	T	C	882	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=17.29;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:915,102,0
chrXI	551284	.	C	T	2588	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.70;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2621,282,0
chrXI	551392	.	T	C	2621	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.723;DP=127;Dels=0.00;FS=9.452;HaplotypeScore=10.7112;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=0.484;QD=20.64;ReadPosRankSum=2.850;SB=-1.397e+03	GT:AD:DP:GQ:PL	1/1:3,124:127:99:2654,274,0
chrXI	551512	.	G	T	2836	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.01;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2869,300,0
chrXI	551750	.	T	C	2383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=3.481;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=1.246;QD=22.06;ReadPosRankSum=1.700;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2416,267,0
chrXI	551818	.	T	A	2143	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.43;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2176,231,0
chrXI	551893	.	C	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.53;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1798,189,0
chrXI	552591	.	C	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.87;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1345,141,0
chrXI	552627	.	C	T	2163	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=25.15;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2196,234,0
chrXI	552756	.	C	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=20.80;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1260,141,0
chrXI	552901	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=1.182;QD=20.51;ReadPosRankSum=1.677;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1325,147,0
chrXI	552927	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.66;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1500,159,0
chrXI	552998	.	A	G	2104	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.7453;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.25;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2137,231,0
chrXI	553078	.	C	T	1429	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=19.31;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1462,156,0
chrXI	553084	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=74;Dels=0.00;FS=6.849;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=1.216;QD=17.97;ReadPosRankSum=2.244;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:2,70:74:99:1363,153,0
chrXI	553304	.	T	A	1735	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.07;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1768,192,0
chrXI	553342	.	T	C	1946	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.3207;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.37;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1979,216,0
chrXI	553992	.	T	C	1796	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.64;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1829,198,0
chrXI	554162	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=-0.981;QD=16.31;ReadPosRankSum=0.689;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1387,147,0
chrXI	554163	.	G	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.11;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1453,150,0
chrXI	554207	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=16.87;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1197,132,0
chrXI	554227	.	A	G	1321	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=17.38;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1354,150,0
chrXI	554305	.	C	G	1833	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.83;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1866,213,0
chrXI	554554	.	C	T	1154	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.98;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1187,126,0
chrXI	555181	.	A	G	569	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=28;MQRankSum=-0.578;QD=8.89;ReadPosRankSum=1.636;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:13,51:64:66:602,66,0
chrXI	555214	.	T	C	581	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.61;MQ0=29;QD=9.22;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,63:63:66:614,66,0
chrXI	555298	.	G	A	841	filter	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=21.34;MQ0=45;QD=10.26;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:23,58:82:93:874,93,0
chrXI	555859	.	C	T	1090.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;DP=75;Dels=0.00;FS=169.805;HaplotypeScore=12.0410;MLEAC=1;MLEAF=0.500;MQ=27.30;MQ0=0;MQRankSum=6.778;QD=14.53;ReadPosRankSum=-0.797;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:22,53:75:99:1120,0,150
chrXI	556375	.	T	C	394	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=12.31;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,29:32:45:427,45,0
chrXI	556468	.	G	A	288	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=13.71;SB=-8.696e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:36:321,36,0
chrXI	556475	.	A	T	262	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=11.39;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:0,23:23:33:295,33,0
chrXI	556484	.	A	G	271	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=14.26;SB=-1.085e-02	GT:AD:DP:GQ:PL	1/1:0,19:19:33:304,33,0
chrXI	556642	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.19;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1002,105,0
chrXI	556734	.	T	C	970	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.56;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1003,111,0
chrXI	557093	.	T	C	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=70;Dels=0.00;FS=2.788;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.899;QD=22.63;ReadPosRankSum=2.309;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1617,180,0
chrXI	557299	.	G	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.49;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1842,195,0
chrXI	557345	.	T	C	2003	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.062;DP=92;Dels=0.00;FS=7.459;HaplotypeScore=8.6746;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.291;QD=21.77;ReadPosRankSum=2.394;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:2,87:92:99:2036,219,0
chrXI	557824	.	C	G	1740	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8898;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.20;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1773,192,0
chrXI	558102	.	C	G	1385	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.98;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1418,159,0
chrXI	558133	.	G	A	1168	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.25;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1201,129,0
chrXI	558496	.	A	G	1195	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.60;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1228,135,0
chrXI	558670	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=23.47;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1535,165,0
chrXI	558690	.	T	C	1364	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=20.06;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1397,153,0
chrXI	558747	.	G	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=17.53;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1120,120,0
chrXI	558798	.	T	G	1923	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.74;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1956,222,0
chrXI	558976	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=3.183;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.507;QD=19.90;ReadPosRankSum=1.687;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1565,171,0
chrXI	559170	.	C	T	2843	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.74;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,123:125:99:2876,300,0
chrXI	559244	.	A	C	2350	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=22.82;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2383,264,0
chrXI	559313	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.1361;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.210;QD=22.40;ReadPosRankSum=-0.166;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1758,168,0
chrXI	559408	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1472,162,0
chrXI	559595	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=22.82;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1197,123,0
chrXI	559636	.	T	A	1189	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.43;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1222,129,0
chrXI	559644	.	G	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=22.08;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1115,114,0
chrXI	559707	.	T	C	1244	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.62;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1277,138,0
chrXI	559809	.	G	A	1017	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.60;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1050,108,0
chrXI	560783	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.02;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1345,147,0
chrXI	561047	.	T	C	1308	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.917;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-1.230;QD=18.96;ReadPosRankSum=1.682;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1341,147,0
chrXI	561071	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.85;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1202,126,0
chrXI	561959	.	G	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.43;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1762,198,0
chrXI	562081	.	C	T	2500	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.93;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2533,264,0
chrXI	562229	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.86;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1891,198,0
chrXI	562426	.	T	C	2612	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.41;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:0,119:122:99:2645,285,0
chrXI	562470	.	G	T	3017	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.3292;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.18;SB=-1.505e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3050,324,0
chrXI	562706	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=4.771;HaplotypeScore=7.8838;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.866;QD=19.21;ReadPosRankSum=1.691;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1647,177,0
chrXI	562768	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.27;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1513,162,0
chrXI	562866	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.831;QD=17.67;ReadPosRankSum=1.628;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1800,198,0
chrXI	563008	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.48;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1472,156,0
chrXI	563181	.	G	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.45;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1620,168,0
chrXI	563365	.	T	C	2223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=3.322;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=-1.389;QD=21.79;ReadPosRankSum=1.698;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2256,249,0
chrXI	563390	.	G	A	2293	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.40;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2326,243,0
chrXI	563641	.	A	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.27;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1701,177,0
chrXI	563812	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.379;QD=19.09;ReadPosRankSum=1.624;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1274,138,0
chrXI	564538	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.11;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1139,126,0
chrXI	564676	.	C	T	2347	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.20;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2380,255,0
chrXI	564715	.	T	G	2538	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.8782;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.72;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2571,279,0
chrXI	565014	.	T	C	2501	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8114;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.94;SB=-1.331e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2534,282,0
chrXI	565671	.	A	G	1771	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1804,195,0
chrXI	565796	.	G	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.70;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1068,114,0
chrXI	566044	.	A	G	1337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.242;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.271;QD=17.59;ReadPosRankSum=3.336;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:4,72:76:99:1370,147,0
chrXI	566085	.	C	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=18.49;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1272,135,0
chrXI	566095	.	A	C	1094	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=65.7226;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=15.19;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1127,126,0
chrXI	566185	.	C	T	756	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=26.07;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:84:789,84,0
chrXI	566379	.	G	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.00;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1137,120,0
chrXI	566530	.	T	C	1131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.179;QD=19.17;ReadPosRankSum=1.673;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1164,132,0
chrXI	566543	.	T	C	875	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.02;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:908,99,0
chrXI	566551	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.26;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:938,102,0
chrXI	566653	.	G	A	1099	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=17.44;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1132,120,0
chrXI	566731	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.1222;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.47;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1289,141,0
chrXI	567055	.	G	A	923	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.10;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:956,102,0
chrXI	567076	.	T	G	1125	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.02;FS=3.945;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.453;QD=17.86;ReadPosRankSum=1.565;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1158,129,0
chrXI	567598	.	T	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.23;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1510,162,0
chrXI	567633	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.67;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1305,141,0
chrXI	568028	.	A	G	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.731;DP=88;Dels=0.00;FS=8.173;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.955;QD=16.11;ReadPosRankSum=3.677;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:5,83:88:99:1451,165,0
chrXI	568037	.	T	C	1353	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1763;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=15.37;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1386,159,0
chrXI	568100	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=18.88;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1336,150,0
chrXI	568166	.	G	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1234,129,0
chrXI	568283	.	T	C	922	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.8796;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.895;QD=18.44;ReadPosRankSum=2.350;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:2,47:50:99:955,105,0
chrXI	568316	.	T	C	720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=4.472;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.330;QD=17.14;ReadPosRankSum=1.650;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:81:753,81,0
chrXI	568472	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.70;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1400,147,0
chrXI	568502	.	T	C	1213	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.66;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1246,141,0
chrXI	568908	.	G	A	1257	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.27;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1290,141,0
chrXI	569085	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.32;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1504,168,0
chrXI	569468	.	G	A	1116	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1149,123,0
chrXI	569606	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.68;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1212,129,0
chrXI	570049	.	G	A	708	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.67;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:741,78,0
chrXI	570352	.	G	A	1425	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.59;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1458,159,0
chrXI	570688	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-2.413;QD=17.96;ReadPosRankSum=1.861;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1254,138,0
chrXI	570835	.	A	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.04;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1556,168,0
chrXI	570916	.	C	T	985	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=15.39;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1018,108,0
chrXI	570918	.	C	T	966	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=14.86;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:999,108,0
chrXI	570938	.	C	T	771	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=13.07;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:93:804,93,0
chrXI	570942	.	T	C	731	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;QD=12.39;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:87:764,87,0
chrXI	570944	.	A	G	759	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.70;MQ0=0;MQRankSum=0.910;QD=12.86;ReadPosRankSum=1.674;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:87:792,87,0
chrXI	571008	.	T	C	1077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=60;Dels=0.00;FS=3.979;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.213;QD=17.95;ReadPosRankSum=1.675;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1110,120,0
chrXI	571051	.	G	A	1030	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=16.35;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1063,114,0
chrXI	571065	.	T	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=15.47;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1085,117,0
chrXI	571067	.	G	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=15.97;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1199,129,0
chrXI	571091	.	C	T	1018	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9747;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=14.75;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1051,111,0
chrXI	571283	.	A	T	641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-1.126;QD=15.63;ReadPosRankSum=1.646;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:72:674,72,0
chrXI	571329	.	A	G	660	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=17.84;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:75:693,75,0
chrXI	571557	.	C	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=62.6220;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=23.03;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1622,171,0
chrXI	571596	.	A	G	769	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=17.88;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:802,87,0
chrXI	571752	.	G	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.47;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1134,123,0
chrXI	571872	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.089;QD=19.99;ReadPosRankSum=1.633;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1432,159,0
chrXI	572316	.	T	C	788	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.33;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:93:821,93,0
chrXI	572346	.	C	T	617	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.57;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:650,69,0
chrXI	572448	.	T	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1294,138,0
chrXI	572586	.	A	G	684	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=13.41;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:78:717,78,0
chrXI	572589	.	G	A	710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.5227;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=0.849;QD=13.65;ReadPosRankSum=1.529;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:61:743,61,0
chrXI	572739	.	C	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.75;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1387,150,0
chrXI	573116	.	G	A	2772	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2805,294,0
chrXI	573180	.	T	A	666	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.03;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:699,78,0
chrXI	573386	.	T	A	4082.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=194;Dels=0.00;FS=7.791;HaplotypeScore=5.6166;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=0.668;QD=21.04;ReadPosRankSum=2.259;SB=-1.853e+03	GT:AD:DP:GQ:PL	1/1:2,192:194:99:4082,447,0
chrXI	574134	.	C	T	1834	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1867,195,0
chrXI	574626	.	C	T	2325	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=18.90;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2358,261,0
chrXI	574660	.	C	T	3703.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.8659;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.340;QD=21.91;ReadPosRankSum=1.711;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:1,167:169:99:3703,385,0
chrXI	574667	.	G	A	3676.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.69;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3676,382,0
chrXI	574704	.	G	A	3833.01	PASS	AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=7.9046;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.28;SB=-1.610e+03	GT:AD:DP:GQ:PL	1/1:0,171:172:99:3833,411,0
chrXI	574927	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.73;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1401,156,0
chrXI	574955	.	G	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6688;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.90;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1682,183,0
chrXI	575132	.	A	G	1657	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.791;QD=18.01;ReadPosRankSum=1.694;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1690,183,0
chrXI	575153	.	A	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.02;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=17.62;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1760,189,0
chrXI	575157	.	T	C	1712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;DP=97;Dels=0.00;FS=2.178;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=1.453;QD=17.65;ReadPosRankSum=2.927;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:3,94:97:99:1745,189,0
chrXI	575327	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8322;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.78;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1601,168,0
chrXI	575413	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.16;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1197,129,0
chrXI	575606	.	T	G	1891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.4734;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-0.318;QD=21.25;ReadPosRankSum=1.702;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1924,216,0
chrXI	575717	.	G	A	2596	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.01;FS=0.000;HaplotypeScore=9.6386;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.60;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2629,285,0
chrXI	575843	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.28;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1190,132,0
chrXI	575852	.	A	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.13;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1175,129,0
chrXI	576007	.	C	T	1806	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.43;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1839,192,0
chrXI	576483	.	C	G	1611	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=24.1294;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.48;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1644,189,0
chrXI	576555	.	A	G	555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.6338;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=1.552;QD=7.21;ReadPosRankSum=1.507;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:69:588,69,0
chrXI	576797	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.99;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2312,246,0
chrXI	576947	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.52;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1152,126,0
chrXI	577185	.	A	G	2522	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.386;DP=123;Dels=0.00;FS=9.204;HaplotypeScore=11.9059;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.162;QD=20.50;ReadPosRankSum=3.344;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:4,119:123:99:2555,291,0
chrXI	577326	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.56;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1305,141,0
chrXI	577353	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.02;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1023,111,0
chrXI	577440	.	A	G	1117	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.31;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1150,129,0
chrXI	577769	.	T	C	1252	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.56;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1285,141,0
chrXI	577779	.	G	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.23;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1434,150,0
chrXI	578482	.	A	G	2693	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.805;DP=129;Dels=0.00;FS=11.007;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.961;QD=20.88;ReadPosRankSum=2.899;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:3,126:129:99:2726,315,0
chrXI	578636	.	C	G	2079	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=4.046;HaplotypeScore=9.7921;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.732;QD=20.79;ReadPosRankSum=1.662;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2112,228,0
chrXI	578669	.	G	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.35;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,80:84:99:1658,174,0
chrXI	578716	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6334;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.04;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1436,153,0
chrXI	578824	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.57;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1775,195,0
chrXI	578880	.	C	G	2108	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.27;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2141,234,0
chrXI	578904	.	G	C	1580	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.52;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1613,174,0
chrXI	578942	.	G	A	595	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=13.52;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:69:628,69,0
chrXI	578945	.	T	A	644	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.89;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:677,72,0
chrXI	579126	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=2.881;HaplotypeScore=4.8156;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-1.665;QD=17.02;ReadPosRankSum=2.226;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1156,129,0
chrXI	579180	.	A	G	1352	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=21.46;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1385,153,0
chrXI	579541	.	T	C	669	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.61;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:702,81,0
chrXI	579622	.	T	G	583	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=16.66;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,34:35:69:616,69,0
chrXI	579634	.	G	T	834	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.85;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,39:40:93:867,93,0
chrXI	579792	.	T	C	1518	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=24.89;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1551,171,0
chrXI	580030	.	T	C	540	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:63:573,63,0
chrXI	580181	.	C	T	2009	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=21.60;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2042,222,0
chrXI	580214	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.08;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1656,183,0
chrXI	580227	.	A	G	1499	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.242;QD=17.43;ReadPosRankSum=1.652;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1532,171,0
chrXI	580415	.	C	T	2135	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.83;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2168,231,0
chrXI	580901	.	G	A	90.26	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=8.21;SB=-8.476e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:123,15,0
chrXI	581163	.	T	C	440	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.33;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:54:473,54,0
chrXI	584625	.	C	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6759;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=17.70;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1378,147,0
chrXI	585038	.	C	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.21;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1221,132,0
chrXI	585899	.	C	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.39;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1562,165,0
chrXI	586229	.	G	A	822	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=16.78;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:855,93,0
chrXI	586256	.	T	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=16.62;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1163,126,0
chrXI	586259	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.77;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1190,129,0
chrXI	586293	.	C	T	1311	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7613;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=14.10;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1344,141,0
chrXI	586298	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.1273;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=14.79;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1468,153,0
chrXI	586366	.	T	C	2338	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.06;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,108:111:99:2371,264,0
chrXI	586587	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.33;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1529,168,0
chrXI	587074	.	G	A	2648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.417;HaplotypeScore=15.7326;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.676;QD=21.18;ReadPosRankSum=1.704;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:1,123:125:99:2681,288,0
chrXI	587134	.	T	C	1949	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.09;SB=-1.198e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1982,213,0
chrXI	587530	.	T	C	2340	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.87;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2373,258,0
chrXI	587857	.	G	A	2533	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.2547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.94;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2566,273,0
chrXI	588209	.	G	T	1242	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.00;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1275,138,0
chrXI	588593	.	A	G	2015	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.15;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2048,225,0
chrXI	588609	.	T	C	2012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.692;DP=109;Dels=0.00;FS=5.523;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.823;QD=18.46;ReadPosRankSum=2.935;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:3,105:109:99:2045,225,0
chrXI	588805	.	G	A	1528	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.63;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1561,174,0
chrXI	588930	.	T	C	1753	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=16.70;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:1786,195,0
chrXI	588939	.	T	C	1816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;DP=107;Dels=0.00;FS=11.509;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=1.241;QD=16.97;ReadPosRankSum=2.933;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:3,102:107:99:1849,204,0
chrXI	589078	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.381;QD=18.09;ReadPosRankSum=1.688;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,78:81:99:1498,171,0
chrXI	589279	.	A	G	834	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=16.35;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:867,96,0
chrXI	589327	.	C	T	794	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.64;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:827,87,0
chrXI	589369	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.79;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1085,117,0
chrXI	589384	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=4.929;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.247;QD=19.48;ReadPosRankSum=1.670;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1124,129,0
chrXI	589512	.	C	A	1857	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.93;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1890,210,0
chrXI	589534	.	G	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=22.59;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1682,186,0
chrXI	589580	.	G	T	1256	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.59;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1289,141,0
chrXI	589694	.	T	C	701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=36;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.932;QD=19.47;ReadPosRankSum=2.314;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:2,34:36:81:734,81,0
chrXI	589750	.	T	A	839	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=20.46;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:872,90,0
chrXI	589759	.	G	C	795	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.01;MQ0=0;QD=17.67;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:90:828,90,0
chrXI	589814	.	C	T	1167	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.21;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1200,126,0
chrXI	589828	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=3.736;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.178;QD=16.82;ReadPosRankSum=1.688;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1362,147,0
chrXI	589884	.	A	G	1211	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=17.30;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1244,135,0
chrXI	589892	.	C	G	1180	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=17.88;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1213,135,0
chrXI	589939	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=15.87;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:763,87,0
chrXI	589997	.	T	G	750	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.23;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,37:39:87:783,87,0
chrXI	590023	.	C	T	710	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.88;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:743,78,0
chrXI	590065	.	C	T	253	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=10.54;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:30:286,30,0
chrXI	590067	.	T	G	224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=3.188;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.485;QD=8.96;ReadPosRankSum=1.456;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:1,24:25:30:257,30,0
chrXI	590322	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.47;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1330,144,0
chrXI	590748	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.54;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1381,150,0
chrXI	590994	.	C	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.84;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1450,156,0
chrXI	591899	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.162;QD=17.85;ReadPosRankSum=1.678;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1193,135,0
chrXI	592157	.	A	G	2613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.690;QD=21.24;ReadPosRankSum=1.704;SB=-1.554e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2646,291,0
chrXI	592478	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.68;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1412,153,0
chrXI	592577	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.4830;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.566;QD=17.35;ReadPosRankSum=1.629;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,100:102:99:1803,198,0
chrXI	593181	.	T	C	1430	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.59;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1463,162,0
chrXI	594186	.	T	G	1423	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2363;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.33;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1456,159,0
chrXI	594303	.	T	C	1832	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1865,216,0
chrXI	604356	.	A	G	2096	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.39;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2129,237,0
chrXI	605327	.	A	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.38;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1577,171,0
chrXI	606378	.	G	C	1117	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2390;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.93;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1150,126,0
chrXI	606521	.	G	A	923	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.9903;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.23;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:956,102,0
chrXI	606884	.	G	A	1324	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.83;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1357,141,0
chrXI	607172	.	C	T	908	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.0117;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=16.81;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:941,102,0
chrXI	607271	.	C	T	1706	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.39;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1739,183,0
chrXI	608132	.	T	C	1517	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.491;QD=22.64;ReadPosRankSum=1.629;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1550,171,0
chrXI	608429	.	T	C	1698	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.46;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1731,189,0
chrXI	608546	.	G	A	1023	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.88;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1056,111,0
chrXI	608636	.	G	A	719	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.43;MQ0=0;QD=15.30;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:81:752,81,0
chrXI	608639	.	A	G	645	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;MQRankSum=-0.866;QD=14.66;ReadPosRankSum=1.654;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:75:678,75,0
chrXI	608641	.	G	A	592	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.07;MQ0=0;QD=13.77;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:66:625,66,0
chrXI	608694	.	A	G	509	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=14.97;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:60:542,60,0
chrXI	608829	.	T	C	1437	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.91;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1470,162,0
chrXI	608840	.	G	A	1431	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.15;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1464,153,0
chrXI	608893	.	A	T	978	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.78;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1011,108,0
chrXI	609381	.	T	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3509;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.93;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1167,132,0
chrXI	609536	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.33;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1526,168,0
chrXI	609738	.	A	G	1049	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.962;QD=19.43;ReadPosRankSum=1.668;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1082,120,0
chrXI	610232	.	A	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.59;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1717,183,0
chrXI	610306	.	C	T	1798	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.47;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1831,195,0
chrXI	610361	.	G	A	1192	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.54;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1225,129,0
chrXI	610378	.	C	G	1079	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=16.86;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1112,123,0
chrXI	611187	.	C	G	2257	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7967;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.29;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2290,246,0
chrXI	611219	.	T	C	1991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.180;QD=20.32;ReadPosRankSum=1.696;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:1,95:98:99:2024,219,0
chrXI	611629	.	C	G	1313	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1346,150,0
chrXI	611715	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.15;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1220,135,0
chrXI	611875	.	C	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.62;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1456,156,0
chrXI	612138	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.07;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1269,132,0
chrXI	612307	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1376,147,0
chrXI	612496	.	T	C	1024	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.96;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1057,114,0
chrXI	612508	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.82;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1334,144,0
chrXI	612630	.	C	T	2685	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=27.40;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2718,288,0
chrXI	613340	.	A	G	264	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=8.25;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,30:32:33:297,33,0
chrXI	613379	.	T	A	723	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=15.72;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:81:756,81,0
chrXI	613583	.	G	A	1356	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.20;MQ0=0;QD=23.38;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1389,144,0
chrXI	613584	.	C	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=22.98;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1343,144,0
chrXI	613649	.	T	A	592	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=16.44;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:625,66,0
chrXI	614154	.	A	G	866	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.62;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:899,96,0
chrXI	614248	.	G	A	1118	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.29;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1151,129,0
chrXI	614418	.	C	A	1395	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.14;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1428,153,0
chrXI	614479	.	A	G	1759	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.14;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1792,195,0
chrXI	614538	.	T	A	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.434;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.3563;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=1.673;QD=19.52;ReadPosRankSum=1.673;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1165,129,0
chrXI	614597	.	A	G	1063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=3.8141;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.106;QD=21.69;ReadPosRankSum=1.662;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1096,117,0
chrXI	614931	.	C	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.11;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1084,120,0
chrXI	614951	.	G	A	854	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=18.17;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:887,96,0
chrXI	614957	.	G	T	689	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=15.66;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:722,78,0
chrXI	614985	.	A	T	585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=3.565;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=-1.178;QD=11.47;ReadPosRankSum=1.663;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:69:618,69,0
chrXI	615148	.	C	T	1835	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.80;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1868,195,0
chrXI	615175	.	A	G	1987	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.92;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2020,222,0
chrXI	615234	.	A	G	2677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=127;Dels=0.00;FS=8.693;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-0.416;QD=21.08;ReadPosRankSum=2.411;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:2,125:127:99:2710,306,0
chrXI	615858	.	C	T	894	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:927,105,0
chrXI	615914	.	G	C	1064	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.35;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1097,120,0
chrXI	616020	.	C	T	2220	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.20;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2253,240,0
chrXI	616059	.	A	G	1843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=86;Dels=0.00;FS=9.823;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.471;QD=21.43;ReadPosRankSum=2.777;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:3,83:86:99:1876,204,0
chrXI	616188	.	T	C	994	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=52;Dels=0.00;FS=2.893;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-2.111;QD=19.12;ReadPosRankSum=2.256;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:2,49:52:99:1027,114,0
chrXI	616404	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.15;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1565,174,0
chrXI	616917	.	G	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.08;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1190,129,0
chrXI	617289	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.32;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1187,135,0
chrXI	617524	.	A	G	703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.377;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.1918;MLEAC=2;MLEAF=1.00;MQ=45.65;MQ0=0;MQRankSum=-1.555;QD=17.15;ReadPosRankSum=1.644;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,38:41:84:736,84,0
chrXI	617538	.	C	G	503	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=13.59;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,35:37:57:536,57,0
chrXI	617543	.	A	T	393	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.1869;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=10.92;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:45:426,45,0
chrXI	617705	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1248,129,0
chrXI	617767	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.16;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1217,132,0
chrXI	617954	.	A	G	1521	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=22.37;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1554,168,0
chrXI	618498	.	T	C	2111	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.13;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2144,231,0
chrXI	619005	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;MQRankSum=1.552;QD=18.84;ReadPosRankSum=1.642;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1484,156,0
chrXI	619007	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5356;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=1.421;QD=17.90;ReadPosRankSum=1.688;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1429,159,0
chrXI	619045	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.26;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1494,159,0
chrXI	619260	.	A	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.04;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1328,141,0
chrXI	619475	.	G	A	4024.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.95;SB=-2.098e+03	GT:AD:DP:GQ:PL	1/1:0,167:168:99:4024,426,0
chrXI	619671	.	G	T	2620	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=8.1584;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.65;SB=-1.338e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2653,291,0
chrXI	619794	.	G	A	2529	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.73;SB=-1.503e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2562,276,0
chrXI	620047	.	G	A	2113	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.24;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2146,228,0
chrXI	620083	.	T	C	2333	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=4.771;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.511;QD=22.22;ReadPosRankSum=1.633;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2366,261,0
chrXI	620113	.	T	C	2255	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.74;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2288,261,0
chrXI	620215	.	C	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1673,180,0
chrXI	620347	.	A	C	1778	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.71;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1811,198,0
chrXI	620734	.	G	A	2206	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6732;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.22;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2239,237,0
chrXI	620804	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.15;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1769,189,0
chrXI	620863	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.562;QD=23.19;ReadPosRankSum=1.685;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1749,192,0
chrXI	620930	.	G	A	2133	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.99;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2166,237,0
chrXI	620968	.	C	A	2770	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=24.09;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2803,303,0
chrXI	621270	.	T	G	2057	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=22.12;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2090,231,0
chrXI	621340	.	T	C	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=5.093;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-1.402;QD=18.26;ReadPosRankSum=1.691;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1585,174,0
chrXI	621343	.	G	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=18.25;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1584,171,0
chrXI	621359	.	A	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.98;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1911,201,0
chrXI	621586	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=15.90;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1798,198,0
chrXI	621589	.	T	A	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=42.00;MQ0=0;MQRankSum=-0.340;QD=15.33;ReadPosRankSum=1.570;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:1673,174,0
chrXI	621604	.	T	C	1108	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.91;MQ0=0;QD=12.18;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1141,129,0
chrXI	621611	.	C	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.12;MQ0=0;QD=11.68;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1084,114,0
chrXI	621619	.	A	G	993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.309;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.48;MQ0=0;MQRankSum=-1.070;QD=11.16;ReadPosRankSum=1.693;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1026,111,0
chrXI	621834	.	T	C	1958	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.77;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1991,216,0
chrXI	622127	.	C	T	2214	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.31;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2247,237,0
chrXI	622408	.	C	G	2960	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=8.1930;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.87;SB=-1.559e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2993,327,0
chrXI	622853	.	G	A	2069	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.74;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2102,222,0
chrXI	622912	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.413;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.460;QD=20.46;ReadPosRankSum=1.644;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1649,183,0
chrXI	623288	.	A	G	1283	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.426;QD=21.03;ReadPosRankSum=1.675;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1316,144,0
chrXI	623443	.	A	G	1872	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8186;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.52;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1905,210,0
chrXI	623581	.	A	T	886	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:919,99,0
chrXI	623815	.	A	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.83;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1408,153,0
chrXI	624027	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=4.536;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.000;QD=20.65;ReadPosRankSum=1.604;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1169,135,0
chrXI	624088	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.71;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1668,174,0
chrXI	624190	.	G	A	2640	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.22;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2673,285,0
chrXI	624268	.	C	T	2146	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.0358;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.68;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2179,234,0
chrXI	624424	.	T	C	1803	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=88;Dels=0.00;FS=14.293;HaplotypeScore=8.5508;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.960;QD=20.49;ReadPosRankSum=2.393;SB=-2.380e+02	GT:AD:DP:GQ:PL	1/1:2,84:88:99:1836,201,0
chrXI	624645	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=0.717;QD=19.60;ReadPosRankSum=1.673;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1170,129,0
chrXI	624652	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.15;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1067,114,0
chrXI	624661	.	A	G	966	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=16.37;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:999,111,0
chrXI	624667	.	A	G	879	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=15.98;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:912,99,0
chrXI	624837	.	G	C	1414	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=20.20;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1447,159,0
chrXI	624919	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.87;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1409,150,0
chrXI	625172	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.43;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1769,201,0
chrXI	625615	.	A	C	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.90;MQ0=0;MQRankSum=1.597;QD=21.14;ReadPosRankSum=1.687;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1682,183,0
chrXI	625684	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.12;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1237,129,0
chrXI	627014	.	C	T	1599	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.77;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1632,174,0
chrXI	627031	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=19.24;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1880,198,0
chrXI	627368	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.14;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1682,183,0
chrXI	627512	.	T	C	240	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=1.83;SB=-1.338e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:30:273,30,0
chrXI	627526	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.944;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;MQRankSum=0.211;QD=12.74;ReadPosRankSum=1.535;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:1600,174,0
chrXI	627536	.	C	T	1597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.260;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.5035;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=0.375;QD=13.20;ReadPosRankSum=0.058;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:1630,180,0
chrXI	627620	.	A	G	2271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=3.100;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-0.141;QD=23.17;ReadPosRankSum=1.697;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2304,255,0
chrXI	628100	.	T	C	2187	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.03;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2220,246,0
chrXI	628202	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.47;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:68:99:1493,156,0
chrXI	628658	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.3527;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.75;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1557,165,0
chrXI	628847	.	T	C	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.564;QD=19.23;ReadPosRankSum=1.654;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1764,195,0
chrXI	628859	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.06;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1596,168,0
chrXI	628874	.	T	C	1448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=-1.056;QD=17.66;ReadPosRankSum=1.648;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1481,162,0
chrXI	628913	.	T	A	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=0.655;QD=17.04;ReadPosRankSum=1.639;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1362,141,0
chrXI	629063	.	T	C	1934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=96;Dels=0.00;FS=6.154;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=1.537;QD=20.15;ReadPosRankSum=2.927;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:3,93:96:99:1967,225,0
chrXI	629123	.	C	T	2072	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=19.36;SB=-1.392e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2105,222,0
chrXI	629129	.	C	A	2050	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.52;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2083,222,0
chrXI	629639	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.51;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1262,141,0
chrXI	629864	.	T	C	1882	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.39;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,84:88:99:1915,216,0
chrXI	631029	.	C	G	2833	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.30;SB=-1.507e+03	GT:AD:DP:GQ:PL	1/1:0,131:133:99:2866,312,0
chrXI	631397	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.94;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2139,225,0
chrXI	631523	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.53;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1348,150,0
chrXI	631526	.	A	T	1284	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.61;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1317,141,0
chrXI	631559	.	C	T	1137	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.05;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1170,123,0
chrXI	632015	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.81;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1407,150,0
chrXI	632039	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.12;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1515,162,0
chrXI	632117	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.76;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1649,189,0
chrXI	632255	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.94;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1588,171,0
chrXI	632510	.	T	A	2130	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3569;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=21.96;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2163,237,0
chrXI	632525	.	C	T	1976	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6904;MLEAC=2;MLEAF=1.00;MQ=46.30;MQ0=0;QD=22.45;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2009,216,0
chrXI	632627	.	C	T	1288	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.22;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1321,141,0
chrXI	632654	.	T	C	1211	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.07;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1244,135,0
chrXI	632701	.	G	C	1542	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.04;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1575,171,0
chrXI	632861	.	T	C	161.06	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;MQRankSum=-0.917;QD=3.10;ReadPosRankSum=1.664;SB=-6.341e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:21:194,21,0
chrXI	632869	.	A	G	233	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=4.48;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:30:266,30,0
chrXI	632871	.	A	G	227	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=4.37;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:30:260,30,0
chrXI	632903	.	T	C	912	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;QD=10.86;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:945,105,0
chrXI	632929	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=76.3541;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;QD=13.92;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1188,132,0
chrXI	632930	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=76.3541;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;QD=13.70;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1170,132,0
chrXI	632945	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=16.69;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1235,135,0
chrXI	633113	.	G	T	1893	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=24.58;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1926,204,0
chrXI	633139	.	G	A	1741	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.5964;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=22.04;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,75:79:99:1774,189,0
chrXI	633190	.	G	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.63;MQ0=0;QD=20.65;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1582,171,0
chrXI	633203	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=19.04;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1556,168,0
chrXI	633204	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=19.03;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1536,168,0
chrXI	633233	.	G	A	2009	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=19.70;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2042,219,0
chrXI	633346	.	T	C	1990	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.63;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2023,228,0
chrXI	633428	.	A	G	1938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.866;QD=21.30;ReadPosRankSum=1.653;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:1,87:91:99:1971,216,0
chrXI	633512	.	G	A	1956	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.85;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1989,210,0
chrXI	633545	.	G	A	1988	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.85;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2021,216,0
chrXI	633625	.	C	T	1684	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=19.81;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1717,177,0
chrXI	633641	.	T	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=17.79;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1278,135,0
chrXI	633644	.	C	T	1087	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=15.99;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1120,120,0
chrXI	633689	.	A	G	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;MQRankSum=0.306;QD=17.00;ReadPosRankSum=1.681;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1206,132,0
chrXI	633726	.	A	G	1540	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.25;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1573,171,0
chrXI	633794	.	A	G	1342	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.90;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1375,150,0
chrXI	633803	.	A	G	1351	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0849;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=17.32;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1384,150,0
chrXI	633878	.	T	C	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=74;Dels=0.00;FS=2.756;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.550;QD=19.32;ReadPosRankSum=2.250;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1463,162,0
chrXI	633908	.	A	C	1613	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.16;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1646,186,0
chrXI	633917	.	A	C	1665	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.30;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1698,186,0
chrXI	634022	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=19.06;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1234,132,0
chrXI	634031	.	G	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=17.70;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1166,123,0
chrXI	634241	.	A	T	2285	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=20.04;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2318,249,0
chrXI	634414	.	A	G	819	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.029;DP=47;Dels=0.00;FS=3.055;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;MQRankSum=-0.553;QD=17.43;ReadPosRankSum=2.345;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:2,45:47:93:852,93,0
chrXI	634418	.	G	A	798	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=18.14;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:831,87,0
chrXI	634424	.	A	G	846	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=19.23;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:96:879,96,0
chrXI	634454	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=18.48;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1271,138,0
chrXI	634484	.	A	C	1206	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.75;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1239,141,0
chrXI	634765	.	A	G	2103	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.11;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2136,237,0
chrXI	634934	.	T	C	2339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=3.921;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.420;QD=21.07;ReadPosRankSum=1.670;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2372,258,0
chrXI	635352	.	T	C	816	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.90;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:93:849,93,0
chrXI	635842	.	T	A	1515	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.3476;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.187;QD=22.95;ReadPosRankSum=1.679;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1548,174,0
chrXI	636247	.	G	A	1144	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=18.75;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1177,123,0
chrXI	636252	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.89;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1035,117,0
chrXI	636282	.	T	C	1117	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.45;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1150,129,0
chrXI	636330	.	G	C	1010	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=16.56;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1043,114,0
chrXI	636390	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.89;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1346,147,0
chrXI	636435	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.41;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1553,168,0
chrXI	636552	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.94;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1891,198,0
chrXI	636618	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.03;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1694,186,0
chrXI	636641	.	A	G	1018	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.18;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1051,117,0
chrXI	636720	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.17;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1474,159,0
chrXI	636786	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=16.43;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1134,120,0
chrXI	636795	.	G	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=16.66;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1116,117,0
chrXI	636829	.	G	A	657	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=34.16;MQ0=0;QD=9.95;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:72:690,72,0
chrXI	636846	.	C	T	619	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=8.84;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:72:652,72,0
chrXI	636852	.	T	A	663	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=9.47;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:72:696,72,0
chrXI	636866	.	A	T	584	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=8.98;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:66:617,66,0
chrXI	636879	.	A	C	718	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=10.11;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:81:751,81,0
chrXI	637022	.	A	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.68;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1235,135,0
chrXI	637062	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=0.491;QD=22.30;ReadPosRankSum=1.577;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1527,165,0
chrXI	637441	.	T	G	1641	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.44;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1674,183,0
chrXI	637511	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=1.312;QD=18.71;ReadPosRankSum=2.387;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1511,165,0
chrXI	637566	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=18.43;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1563,177,0
chrXI	637570	.	A	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.15;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1485,159,0
chrXI	637737	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6997;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.97;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1271,141,0
chrXI	638108	.	G	A	2262	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=24.32;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2295,240,0
chrXI	638131	.	C	T	1951	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=23.23;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1984,207,0
chrXI	638618	.	T	G	1517	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.70;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1550,168,0
chrXI	639032	.	A	T	1743	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.35;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1776,192,0
chrXI	639090	.	C	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2206;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.46;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2213,243,0
chrXI	639099	.	G	A	2434	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.98;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2467,267,0
chrXI	639300	.	A	C	1694	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.25;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1727,186,0
chrXI	639414	.	G	C	1641	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.59;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1674,183,0
chrXI	640812	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.6128;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.54;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1553,168,0
chrXI	641098	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.16;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1140,120,0
chrXI	641599	.	G	A	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.433;QD=22.89;ReadPosRankSum=-1.052;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1315,138,0
chrXI	641793	.	C	A	1896	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.39;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1929,204,0
chrXI	642730	.	T	C	2901	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.01;SB=-1.598e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:2934,333,0
chrXI	643662	.	G	A	1929	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.67;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1962,213,0
chrXI	643806	.	G	A	2608	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.29;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2641,288,0
chrXI	643820	.	G	A	2702	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.50;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2735,282,0
chrXI	643961	.	A	G	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.577;QD=18.62;ReadPosRankSum=1.680;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1262,138,0
chrXI	644027	.	G	A	2213	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.32;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2246,237,0
chrXI	644496	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.18;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1558,177,0
chrXI	645006	.	A	T	1346	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.79;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1379,150,0
chrXI	645049	.	A	G	1725	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.54;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1758,192,0
chrXI	645733	.	T	C	1046	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.35;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1079,117,0
chrXI	646290	.	C	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.14;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1703,186,0
chrXI	646526	.	G	A	2528	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.85;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2561,279,0
chrXI	647534	.	A	T	185.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.739;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.9555;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=3;MQRankSum=1.719;QD=2.80;ReadPosRankSum=-0.280;SB=-4.095e-02	GT:AD:DP:GQ:PL	1/1:11,55:66:24:218,24,0
chrXI	647576	.	T	C	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.50;MQ0=3;QD=0.28;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,57:57:6:47,6,0
chrXI	647609	.	T	C	135.13	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=0;QD=3.75;SB=-1.410e-01	GT:AD:DP:GQ:PL	1/1:0,36:36:18:168,18,0
chrXI	649283	.	G	A	1457	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.96;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1490,156,0
chrXI	650493	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.4661;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.58;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1457,159,0
chrXI	652686	.	C	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.71;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1408,153,0
chrXI	655131	.	T	G	1577	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6032;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.48;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1610,177,0
chrXI	655666	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.4951;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.50;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1188,126,0
chrXI	656736	.	G	T	1879	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.1283;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.11;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1912,201,0
chrXI	657000	.	C	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.57;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1851,195,0
chrXI	657057	.	T	C	1811	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1844,198,0
chrXI	657311	.	T	C	2303	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.589;QD=23.03;ReadPosRankSum=1.697;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2336,258,0
chrXI	657654	.	A	T	1247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.376;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.102;QD=18.07;ReadPosRankSum=1.630;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1280,141,0
chrXI	657801	.	G	A	2001	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.82;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2034,216,0
chrXI	657812	.	T	C	1773	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=23.03;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1806,198,0
chrXI	657838	.	A	C	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.678;QD=19.23;ReadPosRankSum=1.682;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1379,153,0
chrXI	657941	.	T	C	879	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=22.54;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:912,102,0
chrXI	657972	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-0.742;QD=21.50;ReadPosRankSum=1.547;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1237,138,0
chrXI	657995	.	A	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=21.19;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1262,132,0
chrXI	658021	.	C	G	1102	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.37;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1135,126,0
chrXI	658026	.	A	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=20.10;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1219,126,0
chrXI	658079	.	G	A	823	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=13.49;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:93:856,93,0
chrXI	658175	.	C	T	685	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.03;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:718,78,0
chrXI	658182	.	C	G	675	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=17.76;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,35:37:78:708,78,0
chrXI	658219	.	A	G	1010	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.96;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1043,114,0
chrXI	658329	.	A	T	921	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=16.16;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:954,99,0
chrXI	658396	.	C	T	921	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=39.52;MQ0=0;QD=14.39;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:954,99,0
chrXI	658419	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=18.58;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1371,141,0
chrXI	658489	.	G	A	1340	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;QD=22.71;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1373,153,0
chrXI	658515	.	C	G	1177	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=21.02;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1210,138,0
chrXI	658746	.	A	C	617	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.40;MQ0=0;QD=17.63;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:69:650,69,0
chrXI	658824	.	A	G	449	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=22;QD=10.20;SB=-6.550e-03	GT:AD:DP:GQ:PL	1/1:11,33:44:54:482,54,0
chrXI	658968	.	A	G	99.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;MQRankSum=-0.747;QD=12.41;ReadPosRankSum=0.747;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:1,7:8:15:132,15,0
chrXI	659095	.	G	A	296.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.401;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.2251;MLEAC=1;MLEAF=0.500;MQ=18.31;MQ0=8;MQRankSum=0.633;QD=3.44;ReadPosRankSum=-0.674;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:51,35:86:99:326,0,540
chrXI	659162	.	G	A	216.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=17.50;MQ0=11;MQRankSum=-0.338;QD=4.32;ReadPosRankSum=-0.370;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:15,35:50:80:246,0,80
chrXI	659634	.	A	G	13.25	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.07;MQ0=20;MQRankSum=0.736;QD=0.58;ReadPosRankSum=0.736;SB=-2.104e+01	GT:AD:DP:GQ:PL	0/1:10,13:23:18:43,0,18
chrXI	659937	.	A	G	98.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;DP=45;Dels=0.00;FS=14.374;HaplotypeScore=4.1463;MLEAC=1;MLEAF=0.500;MQ=16.28;MQ0=15;MQRankSum=-0.229;QD=2.18;ReadPosRankSum=0.686;SB=-5.201e+01	GT:AD:DP:GQ:PL	0/1:22,23:45:99:128,0,214
chrXI	659991	.	T	C	105.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.781;DP=41;Dels=0.00;FS=7.258;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=16.38;MQ0=14;MQRankSum=0.708;QD=2.56;ReadPosRankSum=-1.879;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:19,21:41:99:135,0,216
chrXI	660039	.	G	A	74.51	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.61;MQ0=9;QD=4.97;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:12:107,12,0
chrXI	660116	.	G	A	100.26	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.35;MQ0=38;QD=2.05;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:19,30:49:15:133,15,0
chrXI	660123	.	G	A	124.13	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.00;MQ0=37;QD=2.48;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:18,32:50:18:157,18,0
chrXI	660406	.	G	A	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=9;Dels=0.00;FS=3.136;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=33.07;MQ0=2;MQRankSum=-0.550;QD=1.47;ReadPosRankSum=-0.937;SB=-1.895e+01	GT:AD:DP:GQ:PL	0/1:5,4:9:43:43,0,43
chrXI	660637	.	T	C	45.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=11.49;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:9:78,9,0
chrXI	660644	.	A	T	49.97	filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=16.66;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:82,9,0
chrXI	660787	.	C	T	137.13	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=4;QD=12.47;SB=-2.888e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:18:170,18,0
chrXI	660798	.	C	T	269	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=6;QD=14.94;SB=-2.900e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:33:302,33,0
chrXI	660826	.	C	A	45.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=31.21;MQ0=11;MQRankSum=-0.718;QD=1.15;ReadPosRankSum=-1.467;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,8:39:75:75,0,410
chrXI	660833	.	A	G	473.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=30.36;MQ0=12;MQRankSum=0.586;QD=11.26;ReadPosRankSum=1.806;SB=-5.401e+01	GT:AD:DP:GQ:PL	0/1:11,31:42:93:503,0,93
chrXI	660936	.	T	G	101.26	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.12;MQ0=1;QD=10.13;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:134,15,0
chrXI	661030	.	G	A	50.97	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.38;MQ0=3;QD=7.28;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:9:83,9,0
chrXI	661088	.	G	A	215.01	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=7;QD=11.95;SB=-1.946e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:27:248,27,0
chrXI	661093	.	G	C	208.01	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.64;MQ0=7;QD=11.56;SB=-1.946e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:27:241,27,0
chrXI	661167	.	C	T	587	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=11;QD=13.04;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:66:620,66,0
chrXI	661199	.	A	G	653	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.855;DP=49;Dels=0.00;FS=5.126;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.61;MQ0=8;MQRankSum=-0.350;QD=13.33;ReadPosRankSum=3.855;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:7,42:49:75:686,75,0
chrXI	661249	.	A	C	105.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.944;DP=19;Dels=0.00;FS=3.041;HaplotypeScore=10.7236;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=6;MQRankSum=-0.930;QD=5.54;ReadPosRankSum=2.451;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:3,16:19:15:138,15,0
chrXI	661398	.	C	A	592	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=14;QD=14.80;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:66:625,66,0
chrXI	661414	.	A	C	164.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;DP=43;Dels=0.00;FS=1.402;HaplotypeScore=12.8898;MLEAC=1;MLEAF=0.500;MQ=35.30;MQ0=12;MQRankSum=2.600;QD=3.81;ReadPosRankSum=0.536;SB=-1.290e+02	GT:AD:DP:GQ:PL	0/1:26,17:43:99:194,0,220
chrXI	661415	.	A	G	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;DP=41;Dels=0.00;FS=8.870;HaplotypeScore=12.1011;MLEAC=1;MLEAF=0.500;MQ=35.86;MQ0=11;MQRankSum=-0.153;QD=0.35;ReadPosRankSum=0.214;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,7:41:44:44,0,406
chrXI	661542	.	A	T	47.03	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.76;MQ0=22;MQRankSum=0.358;QD=1.74;ReadPosRankSum=1.231;SB=-2.811e-02	GT:AD:DP:GQ:PL	0/1:13,14:27:20:77,0,20
chrXI	661888	.	C	A	99.26	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;QD=14.18;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,7:7:15:132,15,0
chrXI	661960	.	C	T	106.26	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=5;QD=9.66;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:139,15,0
chrXI	661963	.	A	T	125.26	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.42;MQ0=5;QD=11.39;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:158,15,0
chrXI	662044	.	C	T	164.06	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.28;MQ0=9;QD=9.11;SB=-5.394e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:21:197,21,0
chrXI	662123	.	A	G	100.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.13;MQ0=4;MQRankSum=0.751;QD=7.71;ReadPosRankSum=0.751;SB=-2.620e+01	GT:AD:DP:GQ:PL	1/1:2,11:13:15:133,15,0
chrXI	662530	.	C	T	107.26	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.23;MQ0=11;QD=6.31;SB=-5.576e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:15:140,15,0
chrXI	662659	.	A	G	482	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=24.49;MQ0=26;MQRankSum=-1.108;QD=7.65;ReadPosRankSum=2.250;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:15,48:63:57:515,57,0
chrXI	662938	.	A	G	126.13	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=13.33;MQ0=52;QD=1.70;SB=-1.069e+02	GT:AD:DP:GQ:PL	1/1:21,52:74:18:159,18,0
chrXI	663021	.	G	A	360	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=32;QD=6.21;SB=-6.793e-03	GT:AD:DP:GQ:PL	1/1:9,48:58:42:393,42,0
chrXI	663043	.	G	C	298	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.91;MQ0=12;QD=8.76;SB=-8.153e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:36:331,36,0
chrXI	663226	.	T	C	234.22	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;DP=50;Dels=0.00;FS=23.609;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.70;MQ0=5;MQRankSum=1.737;QD=4.68;ReadPosRankSum=-0.430;SB=-1.562e+02	GT:AD:DP:GQ:PL	0/1:10,40:50:10:264,0,10
chrXI	663255	.	G	A	220.19	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=49;Dels=0.00;FS=20.506;HaplotypeScore=2.7398;MLEAC=2;MLEAF=1.00;MQ=17.13;MQ0=6;MQRankSum=1.560;QD=4.49;ReadPosRankSum=0.508;SB=-8.307e+01	GT:AD:DP:GQ:PL	1/1:9,40:49:8:252,8,0
chrXI	663269	.	A	G	211	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.503;DP=40;Dels=0.00;FS=4.660;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.60;MQ0=4;MQRankSum=2.653;QD=5.28;ReadPosRankSum=2.379;SB=-2.800e+01	GT:AD:DP:GQ:PL	1/1:8,32:40:30:244,30,0
chrXI	663275	.	A	G	158.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.033;DP=33;Dels=0.00;FS=9.688;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.77;MQ0=2;MQRankSum=3.153;QD=4.79;ReadPosRankSum=2.858;SB=-2.697e+01	GT:AD:DP:GQ:PL	1/1:6,27:33:24:191,24,0
chrXI	663293	.	C	T	104.13	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.09;MQ0=2;QD=3.59;SB=-2.888e+01	GT:AD:DP:GQ:PL	1/1:2,27:29:18:137,18,0
chrXI	663324	.	T	A	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=7.6541;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=2;QD=0.56;SB=-5.177e+01	GT:AD:DP:GQ:PL	1/1:2,37:39:6:53,6,0
chrXI	663425	.	C	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=3;QD=20.65;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1272,135,0
chrXI	663490	.	A	G	104.26	filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.01;MQ0=3;QD=13.03;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,6:8:15:137,15,0
chrXI	663492	.	C	A	108.26	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.67;MQ0=2;QD=15.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:7:15:141,15,0
chrXI	663501	.	G	A	38.11	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=21.64;MQ0=1;MQRankSum=1.754;QD=4.23;ReadPosRankSum=-0.550;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:5,3:9:13:68,0,13
chrXI	663637	.	G	A	84.26	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=20.5103;MLEAC=2;MLEAF=1.00;MQ=21.15;MQ0=6;QD=2.72;SB=-1.612e+02	GT:AD:DP:GQ:PL	1/1:4,27:31:15:117,15,0
chrXI	663652	.	A	G	81.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.61;MQ0=1;QD=3.39;SB=-1.672e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:15:114,15,0
chrXI	663653	.	T	A	83.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=26;Dels=0.00;FS=8.239;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.18;MQ0=1;MQRankSum=-1.352;QD=3.20;ReadPosRankSum=2.254;SB=-1.532e+02	GT:AD:DP:GQ:PL	1/1:2,24:26:15:116,15,0
chrXI	663659	.	G	A	146.06	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.12;MQ0=1;QD=4.30;SB=-1.871e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:21:179,21,0
chrXI	663684	.	C	G	244	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.72;MQ0=0;QD=6.26;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:33:277,33,0
chrXI	663722	.	C	A	527	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=3;QD=11.46;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:63:560,63,0
chrXI	663726	.	G	C	518	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.80;MQ0=3;QD=11.77;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:63:551,63,0
chrXI	663736	.	G	A	508	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=3;QD=11.55;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:60:541,60,0
chrXI	663749	.	T	C	473	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.67;MQ0=3;QD=13.51;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:60:506,60,0
chrXI	663816	.	G	A	409.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.125;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=24.98;MQ0=6;MQRankSum=1.954;QD=11.36;ReadPosRankSum=0.956;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:5,31:36:27:442,27,0
chrXI	663830	.	G	A	382.02	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.122;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.56;MQ0=7;MQRankSum=2.037;QD=10.32;ReadPosRankSum=-0.873;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:5,32:37:25:415,25,0
chrXI	663881	.	T	C	426.18	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;DP=39;Dels=0.00;FS=21.944;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=24.88;MQ0=6;MQRankSum=2.699;QD=10.93;ReadPosRankSum=1.349;SB=-1.092e+02	GT:AD:DP:GQ:PL	0/1:5,33:39:11:456,0,11
chrXI	663906	.	A	G	457.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790;DP=53;Dels=0.00;FS=51.218;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=24.31;MQ0=7;MQRankSum=3.715;QD=8.62;ReadPosRankSum=2.089;SB=-9.502e+01	GT:AD:DP:GQ:PL	0/1:12,41:53:53:487,0,53
chrXI	664053	.	C	T	649	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.86;MQ0=4;QD=13.52;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:72:682,72,0
chrXI	664104	.	A	G	325	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=4;QD=13.54;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:39:358,39,0
chrXI	664233	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.87;MQ0=1;QD=23.68;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1596,177,0
chrXI	664262	.	T	C	1933	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=1;MQRankSum=0.590;QD=21.01;ReadPosRankSum=1.618;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1966,228,0
chrXI	664278	.	A	G	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=5.714;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;MQRankSum=-1.141;QD=21.30;ReadPosRankSum=1.521;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1780,201,0
chrXI	664299	.	A	G	1489	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.09;MQ0=0;QD=20.97;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1522,174,0
chrXI	664310	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.393;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=26.10;MQ0=0;MQRankSum=-1.312;QD=18.42;ReadPosRankSum=1.680;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1249,144,0
chrXI	664494	.	G	A	84.51	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=10.56;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:12:117,12,0
chrXI	664498	.	G	A	106.26	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=0;QD=11.81;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:0,9:9:15:139,15,0
chrXI	664525	.	G	A	215.01	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=11;QD=8.27;SB=-2.327e-02	GT:AD:DP:GQ:PL	1/1:6,20:26:27:248,27,0
chrXI	664620	.	A	C	1092	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.861;DP=112;Dels=0.00;FS=3.294;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=24.06;MQ0=32;MQRankSum=1.621;QD=9.75;ReadPosRankSum=2.153;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:28,83:112:99:1125,132,0
chrXI	664633	.	C	G	1050	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.892;DP=99;Dels=0.00;FS=3.197;HaplotypeScore=68.8356;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=22;MQRankSum=2.320;QD=10.61;ReadPosRankSum=-0.049;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:23,75:99:99:1083,123,0
chrXI	664643	.	T	A	856	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.223;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=24.27;MQ0=18;MQRankSum=2.255;QD=9.11;ReadPosRankSum=-1.249;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:20,74:94:99:889,99,0
chrXI	664644	.	T	C	838	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.396;DP=95;Dels=0.00;FS=4.815;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=17;MQRankSum=2.481;QD=8.82;ReadPosRankSum=0.759;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:21,74:95:99:871,102,0
chrXI	664654	.	G	A	872	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.173;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=18.7110;MLEAC=2;MLEAF=1.00;MQ=25.04;MQ0=14;MQRankSum=2.265;QD=9.18;ReadPosRankSum=-2.357;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:16,78:94:99:905,99,0
chrXI	664656	.	G	A	863	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.746;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.7499;MLEAC=2;MLEAF=1.00;MQ=25.22;MQ0=13;MQRankSum=2.328;QD=9.08;ReadPosRankSum=-2.176;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:15,79:95:99:896,99,0
chrXI	664673	.	G	A	761	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.316;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=10;MQRankSum=2.360;QD=8.27;ReadPosRankSum=-0.436;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:12,80:92:90:794,90,0
chrXI	664723	.	T	C	897	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=4;MQRankSum=-0.205;QD=9.25;ReadPosRankSum=1.695;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:5,92:97:99:930,102,0
chrXI	664742	.	A	G	813	filter	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.77;MQ0=8;QD=8.47;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:8,88:96:93:846,93,0
chrXI	664748	.	C	A	805	filter	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=8;QD=8.13;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:8,91:99:93:838,93,0
chrXI	664760	.	A	C	661	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=10;QD=7.18;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:10,82:92:78:694,78,0
chrXI	664761	.	A	G	662	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=10;QD=7.20;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:10,82:92:78:695,78,0
chrXI	664769	.	T	C	545	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=10;MQRankSum=-1.732;QD=5.45;ReadPosRankSum=1.694;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:11,89:100:66:578,66,0
chrXI	664774	.	C	T	500	filter	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=11;QD=5.26;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:11,84:95:57:533,57,0
chrXI	664805	.	A	T	521	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=87;Dels=0.00;FS=15.966;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.12;MQ0=8;MQRankSum=-1.688;QD=5.99;ReadPosRankSum=1.688;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:9,78:87:57:554,57,0
chrXI	664809	.	A	G	506	filter	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=7;QD=5.95;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:7,76:85:57:539,57,0
chrXI	664835	.	A	G	1038	filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4591;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=3;QD=13.31;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1071,114,0
chrXI	664865	.	G	T	1218	filter	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=1;QD=17.15;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1251,135,0
chrXI	664992	.	G	A	3125	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.1427;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=41;MQRankSum=1.656;QD=17.46;ReadPosRankSum=0.076;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:23,154:179:99:3158,309,0
chrXI	665052	.	A	G	4072.01	PASS	AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=30.10;MQ0=0;QD=22.50;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:0,181:181:99:4072,447,0
chrXI	665090	.	G	A	2818	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.2426;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=22.19;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2851,303,0
chrXI	665125	.	C	T	2516	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=31.21;MQ0=0;QD=21.88;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2549,267,0
chrXI	665170	.	T	C	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.502;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;MQRankSum=1.586;QD=22.94;ReadPosRankSum=1.683;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1662,180,0
chrXI	665216	.	C	T	609	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.43;MQ0=0;QD=19.03;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,29:32:72:642,72,0
chrXI	665227	.	A	C	600	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=20.69;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:72:633,72,0
chrXI	665232	.	A	G	493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=28;Dels=0.00;FS=2.755;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=0;MQRankSum=-0.966;QD=17.61;ReadPosRankSum=2.748;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:3,25:28:60:526,60,0
chrXI	665268	.	G	A	636	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;QD=20.52;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:72:669,72,0
chrXI	665280	.	C	G	590	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=17.35;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,33:34:69:623,69,0
chrXI	665287	.	C	T	602	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.68;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:75:635,75,0
chrXI	665296	.	G	A	785	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.84;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:87:818,87,0
chrXI	665316	.	A	G	882	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.29;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,51:51:99:915,99,0
chrXI	665320	.	G	A	942	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:975,102,0
chrXI	665330	.	G	A	1002	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1035,108,0
chrXI	665333	.	A	G	918	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.672;QD=16.11;ReadPosRankSum=2.364;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,55:57:99:951,105,0
chrXI	665337	.	T	C	923	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.73;MQ0=1;QD=17.09;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,53:54:99:956,102,0
chrXI	665385	.	A	G	553	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.03;MQ0=1;QD=12.86;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:66:586,66,0
chrXI	665398	.	A	G	670	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.11;MQ0=1;MQRankSum=0.448;QD=13.96;ReadPosRankSum=2.345;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:2,46:48:78:703,78,0
chrXI	665402	.	T	A	676	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=1;QD=15.02;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:78:709,78,0
chrXI	665600	.	A	G	1087	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=8;QD=18.42;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1120,132,0
chrXI	665602	.	G	A	1108	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=8;QD=19.79;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1141,126,0
chrXI	665610	.	A	G	1054	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.281;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.12;MQ0=5;MQRankSum=1.205;QD=20.67;ReadPosRankSum=0.904;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1087,117,0
chrXI	665629	.	A	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=26.58;MQ0=0;QD=22.57;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1071,117,0
chrXI	665791	.	T	C	169.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.729;DP=34;Dels=0.00;FS=10.726;HaplotypeScore=22.5437;MLEAC=2;MLEAF=1.00;MQ=18.02;MQ0=8;MQRankSum=-1.926;QD=4.97;ReadPosRankSum=2.729;SB=-1.810e+02	GT:AD:DP:GQ:PL	1/1:3,31:34:24:202,24,0
chrXI	665798	.	G	C	32.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;DP=40;Dels=0.00;FS=17.421;HaplotypeScore=17.2729;MLEAC=1;MLEAF=0.500;MQ=18.07;MQ0=8;MQRankSum=-3.021;QD=0.80;ReadPosRankSum=1.416;SB=-6.495e+01	GT:AD:DP:GQ:PL	0/1:15,24:40:62:62,0,155
chrXI	665805	.	G	A	186.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.967;DP=43;Dels=0.00;FS=29.269;HaplotypeScore=8.5211;MLEAC=1;MLEAF=0.500;MQ=17.66;MQ0=8;MQRankSum=3.904;QD=4.33;ReadPosRankSum=-1.015;SB=-4.007e+00	GT:AD:DP:GQ:PL	0/1:30,12:43:53:216,0,53
chrXI	665826	.	G	A	216.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;DP=43;Dels=0.00;FS=18.378;HaplotypeScore=3.5907;MLEAC=1;MLEAF=0.500;MQ=20.01;MQ0=6;MQRankSum=4.565;QD=5.02;ReadPosRankSum=-0.239;SB=-7.801e+01	GT:AD:DP:GQ:PL	0/1:27,16:43:52:246,0,52
chrXI	665831	.	A	G	311	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.5907;MLEAC=2;MLEAF=1.00;MQ=19.79;MQ0=6;QD=7.59;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:39:344,39,0
chrXI	665927	.	C	T	773	filter	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.83;MQ0=11;QD=10.89;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:93:806,93,0
chrXI	665974	.	T	G	1166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.286;DP=138;Dels=0.00;FS=36.896;HaplotypeScore=26.1628;MLEAC=1;MLEAF=0.500;MQ=21.11;MQ0=20;MQRankSum=-1.109;QD=8.45;ReadPosRankSum=1.195;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:47,91:138:99:1196,0,473
chrXI	665985	.	A	G	2117	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.575;DP=149;Dels=0.00;FS=29.635;HaplotypeScore=10.3814;MLEAC=2;MLEAF=1.00;MQ=20.71;MQ0=23;MQRankSum=0.600;QD=14.21;ReadPosRankSum=-2.262;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:5,143:149:99:2150,186,0
chrXI	665996	.	A	G	1940	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.053;DP=148;Dels=0.00;FS=59.702;HaplotypeScore=1.9681;MLEAC=2;MLEAF=1.00;MQ=20.73;MQ0=23;MQRankSum=-2.265;QD=13.11;ReadPosRankSum=-1.377;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:8,140:148:99:1973,137,0
chrXI	666022	.	T	C	366.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DP=85;Dels=0.00;FS=8.746;HaplotypeScore=20.3340;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=14;MQRankSum=-0.727;QD=4.31;ReadPosRankSum=-2.043;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:46,36:85:99:396,0,631
chrXI	666055	.	T	G	59.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=19.0606;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=5;MQRankSum=-0.943;QD=1.18;ReadPosRankSum=2.280;SB=-3.601e+01	GT:AD:DP:GQ:PL	0/1:32,18:50:89:89,0,226
chrXI	666062	.	G	A	96.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=37.4053;MLEAC=1;MLEAF=0.500;MQ=22.28;MQ0=4;MQRankSum=-1.707;QD=1.85;ReadPosRankSum=2.866;SB=-3.601e+01	GT:AD:DP:GQ:PL	0/1:28,24:52:99:126,0,252
chrXI	666063	.	A	G	65.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;DP=55;Dels=0.00;FS=11.938;HaplotypeScore=37.4053;MLEAC=1;MLEAF=0.500;MQ=22.48;MQ0=4;MQRankSum=-1.991;QD=1.18;ReadPosRankSum=-2.576;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:43,12:55:95:95,0,327
chrXI	666068	.	T	C	59.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DP=54;Dels=0.00;FS=2.574;HaplotypeScore=27.6330;MLEAC=1;MLEAF=0.500;MQ=22.67;MQ0=4;MQRankSum=4.130;QD=1.09;ReadPosRankSum=1.067;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:40,14:54:89:89,0,245
chrXI	666070	.	G	A	42.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=19.4748;MLEAC=1;MLEAF=0.500;MQ=23.34;MQ0=3;MQRankSum=4.916;QD=0.88;ReadPosRankSum=0.282;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,14:48:72:72,0,251
chrXI	666072	.	C	A,G	249.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=11.6808;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.35;MQ0=3;QD=5.41;SB=-4.801e+01	GT:AD:DP:GQ:PL	1/2:0,30,16:46:99:309,154,133,156,0,135
chrXI	666074	.	C	G	54.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.712;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.7958;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=3;MQRankSum=3.040;QD=1.23;ReadPosRankSum=0.855;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,13:44:84:84,0,175
chrXI	666075	.	G	A	58.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.497;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.7958;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=3;MQRankSum=4.132;QD=1.32;ReadPosRankSum=1.051;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,13:44:88:88,0,151
chrXI	666077	.	C	T	71.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.980;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=8.2930;MLEAC=1;MLEAF=0.500;MQ=22.97;MQ0=3;MQRankSum=4.218;QD=1.54;ReadPosRankSum=1.521;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,13:46:99:101,0,178
chrXI	666083	.	A	G	97.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;DP=65;Dels=0.00;FS=2.995;HaplotypeScore=5.3285;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=6;MQRankSum=0.192;QD=1.49;ReadPosRankSum=2.851;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:42,23:65:99:127,0,150
chrXI	666111	.	G	A	411	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=20.19;MQ0=5;QD=4.47;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:5,87:92:54:444,54,0
chrXI	666116	.	A	C	417	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=48.5029;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=5;QD=4.53;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:5,87:92:51:450,51,0
chrXI	666117	.	A	T	417	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=48.5029;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=5;QD=4.53;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,61:92:51:450,51,0
chrXI	666123	.	C	G	346.04	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=5.459;DP=89;Dels=0.00;FS=4.929;HaplotypeScore=35.4782;MLEAC=2;MLEAF=1.00;MQ=19.88;MQ0=5;MQRankSum=5.440;QD=3.89;ReadPosRankSum=-1.044;SB=-3.254e-02	GT:AD:DP:GQ:PL	1/1:32,57:89:23:379,23,0
chrXI	666126	.	A	G	72.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=34.5117;MLEAC=1;MLEAF=0.500;MQ=20.24;MQ0=5;MQRankSum=2.758;QD=0.78;ReadPosRankSum=1.427;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,25:92:99:102,0,213
chrXI	666143	.	G	A	65.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.432;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=19.77;MQ0=6;MQRankSum=2.047;QD=0.79;ReadPosRankSum=2.578;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,25:82:95:95,0,152
chrXI	666175	.	T	C	163.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.441;DP=77;Dels=0.00;FS=72.503;HaplotypeScore=35.2928;MLEAC=1;MLEAF=0.500;MQ=23.20;MQ0=6;MQRankSum=0.124;QD=2.12;ReadPosRankSum=3.180;SB=-1.329e+02	GT:AD:DP:GQ:PL	0/1:48,28:77:99:193,0,406
chrXI	666177	.	G	A	243.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;DP=62;Dels=0.00;FS=32.881;HaplotypeScore=34.5041;MLEAC=1;MLEAF=0.500;MQ=24.20;MQ0=4;MQRankSum=-0.966;QD=3.92;ReadPosRankSum=1.555;SB=-3.300e+02	GT:AD:DP:GQ:PL	0/1:21,41:62:99:273,0,317
chrXI	666186	.	G	A	166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DP=77;Dels=0.00;FS=51.722;HaplotypeScore=42.4430;MLEAC=1;MLEAF=0.500;MQ=23.82;MQ0=4;MQRankSum=-1.226;QD=2.16;ReadPosRankSum=0.213;SB=-1.717e+02	GT:AD:DP:GQ:PL	0/1:37,38:77:99:196,0,467
chrXI	666198	.	A	G	958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.678;DP=81;Dels=0.00;FS=6.389;HaplotypeScore=36.3339;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=2;MQRankSum=-2.273;QD=11.83;ReadPosRankSum=1.661;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:7,73:81:86:991,86,0
chrXI	666216	.	T	G	70.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=89;Dels=0.00;FS=110.343;HaplotypeScore=11.4263;MLEAC=1;MLEAF=0.500;MQ=22.54;MQ0=12;MQRankSum=-2.585;QD=0.79;ReadPosRankSum=0.097;SB=-7.650e+01	GT:AD:DP:GQ:PL	0/1:43,46:89:99:100,0,768
chrXI	666217	.	T	C	63.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.144;DP=90;Dels=0.00;FS=115.435;HaplotypeScore=17.3236;MLEAC=1;MLEAF=0.500;MQ=22.49;MQ0=12;MQRankSum=-3.623;QD=0.70;ReadPosRankSum=0.731;SB=0.631	GT:AD:DP:GQ:PL	0/1:50,40:90:93:93,0,811
chrXI	666257	.	T	A	551.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;DP=105;Dels=0.00;FS=166.518;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=14;MQRankSum=4.959;QD=5.25;ReadPosRankSum=0.936;SB=-6.451e-03	GT:AD:DP:GQ:PL	0/1:73,32:105:99:581,0,369
chrXI	666278	.	A	C	596.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380;DP=89;Dels=0.01;FS=100.045;HaplotypeScore=6.2285;MLEAC=1;MLEAF=0.500;MQ=22.55;MQ0=14;MQRankSum=-2.098;QD=6.70;ReadPosRankSum=4.962;SB=-7.017e+00	GT:AD:DP:GQ:PL	0/1:22,66:88:99:626,0,255
chrXI	666280	.	C	A	605.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.499;DP=88;Dels=0.00;FS=125.798;HaplotypeScore=6.2285;MLEAC=1;MLEAF=0.500;MQ=22.47;MQ0=14;MQRankSum=-2.201;QD=6.88;ReadPosRankSum=5.279;SB=-5.017e+00	GT:AD:DP:GQ:PL	0/1:21,67:88:99:635,0,228
chrXI	666281	.	G	T	574.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;DP=87;Dels=0.00;FS=119.147;HaplotypeScore=6.2285;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=14;MQRankSum=-1.507;QD=6.60;ReadPosRankSum=5.328;SB=-1.402e+01	GT:AD:DP:GQ:PL	0/1:20,67:87:99:604,0,169
chrXI	666287	.	A	T	593.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.269;DP=89;Dels=0.00;FS=64.410;HaplotypeScore=9.1833;MLEAC=1;MLEAF=0.500;MQ=22.03;MQ0=13;MQRankSum=-1.778;QD=6.66;ReadPosRankSum=3.700;SB=-7.602e+01	GT:AD:DP:GQ:PL	0/1:13,76:89:71:623,0,71
chrXI	666300	.	A	G	793	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.084;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=41.9866;MLEAC=2;MLEAF=1.00;MQ=22.99;MQ0=5;MQRankSum=1.688;QD=9.55;ReadPosRankSum=3.700;SB=-1.250e+02	GT:AD:DP:GQ:PL	1/1:8,73:81:83:826,83,0
chrXI	666304	.	C	G	798	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.283;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=19.9987;MLEAC=2;MLEAF=1.00;MQ=23.26;MQ0=4;MQRankSum=0.865;QD=9.85;ReadPosRankSum=3.202;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:7,74:81:83:831,83,0
chrXI	666318	.	A	G	146.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.763;DP=83;Dels=0.01;FS=3.798;HaplotypeScore=42.6309;MLEAC=1;MLEAF=0.500;MQ=23.81;MQ0=2;MQRankSum=-0.177;QD=1.76;ReadPosRankSum=-0.429;SB=-7.601e+01	GT:AD:DP:GQ:PL	0/1:51,30:82:99:176,0,502
chrXI	666346	.	G	A	117.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.742;DP=63;Dels=0.00;FS=2.425;HaplotypeScore=28.6189;MLEAC=1;MLEAF=0.500;MQ=26.30;MQ0=0;MQRankSum=-2.455;QD=1.86;ReadPosRankSum=4.046;SB=-8.101e+01	GT:AD:DP:GQ:PL	0/1:35,28:63:99:147,0,397
chrXI	666348	.	A	G	369.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.03;FS=32.517;HaplotypeScore=24.5569;MLEAC=1;MLEAF=0.500;MQ=26.29;MQ0=0;MQRankSum=-0.049;QD=6.25;ReadPosRankSum=0.382;SB=-1.190e+02	GT:AD:DP:GQ:PL	0/1:12,45:57:56:399,0,56
chrXI	666386	.	T	A	28.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;DP=29;Dels=0.00;FS=5.017;HaplotypeScore=12.5718;MLEAC=1;MLEAF=0.500;MQ=27.71;MQ0=1;MQRankSum=0.647;QD=0.97;ReadPosRankSum=-1.366;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:19,10:29:58:58,0,213
chrXI	666421	.	T	G	154.04	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.980;DP=34;Dels=0.03;FS=4.586;HaplotypeScore=34.4418;MLEAC=1;MLEAF=0.500;MQ=22.58;MQ0=1;MQRankSum=0.829;QD=4.53;ReadPosRankSum=1.583;SB=-1.231e+02	GT:AD:DP:GQ:PL	1/1:1,23:33:24:187,24,0
chrXI	666462	.	T	C	698.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.539;DP=113;Dels=0.00;FS=29.776;HaplotypeScore=12.2519;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=0;MQRankSum=-2.072;QD=6.18;ReadPosRankSum=1.305;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:42,71:113:99:728,0,382
chrXI	666468	.	A	G	770.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.815;DP=122;Dels=0.00;FS=22.245;HaplotypeScore=8.1078;MLEAC=1;MLEAF=0.500;MQ=22.77;MQ0=0;MQRankSum=-2.310;QD=6.31;ReadPosRankSum=0.531;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:43,79:122:99:800,0,431
chrXI	666566	.	T	A	27.54	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DP=36;Dels=0.00;FS=3.424;HaplotypeScore=15.6802;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=0;MQRankSum=-0.474;QD=0.77;ReadPosRankSum=-1.739;SB=20.97	GT:AD:DP:GQ:PL	0/1:1,10:36:13:56,0,13
chrXI	666577	.	C	G	75.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=8.8498;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=3.02;SB=-2.652e+01	GT:AD:DP:GQ:PL	1/1:0,20:25:12:108,12,0
chrXI	666578	.	A	G	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.440;DP=24;Dels=0.00;FS=21.179;HaplotypeScore=8.8498;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;MQRankSum=1.433;QD=2.00;ReadPosRankSum=1.665;SB=-2.097e+01	GT:AD:DP:GQ:PL	1/1:4,20:24:9:80,9,0
chrXI	666587	.	G	A	53.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=3.9641;MLEAC=2;MLEAF=1.00;MQ=27.74;MQ0=0;QD=2.16;SB=-4.598e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:9:86,9,0
chrXI	666590	.	G	T	56.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;DP=22;Dels=0.00;FS=13.010;HaplotypeScore=2.9747;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;MQRankSum=0.694;QD=2.59;ReadPosRankSum=0.000;SB=-9.817e-01	GT:AD:DP:GQ:PL	1/1:1,19:22:9:89,9,0
chrXI	666608	.	T	A	52.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=16;Dels=0.00;FS=21.461;HaplotypeScore=18.6642;MLEAC=2;MLEAF=1.00;MQ=28.16;MQ0=0;MQRankSum=1.031;QD=3.31;ReadPosRankSum=1.152;SB=-3.415e-01	GT:AD:DP:GQ:PL	1/1:4,12:16:9:85,9,0
chrXI	666642	.	G	T	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=27;Dels=0.04;FS=8.438;HaplotypeScore=34.0284;MLEAC=1;MLEAF=0.500;MQ=28.44;MQ0=2;MQRankSum=0.767;QD=1.00;ReadPosRankSum=0.567;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:20,6:26:36:57,0,36
chrXII	5430	.	T	C	292	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=12.81;MQ0=30;MQRankSum=-1.480;QD=2.30;ReadPosRankSum=1.696;SB=-8.696e-03	GT:AD:DP:GQ:PL	1/1:1,126:127:36:325,36,0
chrXII	5459	.	C	A	136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=9.2121;MLEAC=1;MLEAF=0.500;MQ=11.31;MQ0=53;MQRankSum=-2.571;QD=1.07;ReadPosRankSum=1.192;SB=-6.537e-03	GT:AD:DP:GQ:PL	0/1:10,117:127:44:166,0,44
chrXII	5592	.	T	C	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.777;DP=302;Dels=0.00;FS=0.000;HaplotypeScore=9.0119;MLEAC=2;MLEAF=1.00;MQ=3.27;MQ0=283;MQRankSum=0.592;QD=0.09;ReadPosRankSum=-0.948;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:32,265:301:6:57,6,0
chrXII	5646	.	C	A	4887.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;DP=424;Dels=0.00;FS=0.000;HaplotypeScore=3.3561;MLEAC=2;MLEAF=1.00;MQ=23.34;MQ0=189;MQRankSum=-1.364;QD=11.53;ReadPosRankSum=-0.892;SB=-2.213e+03	GT:AD:DP:GQ:PL	1/1:7,417:424:99:4887,495,0
chrXII	5647	.	A	G	4715.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.420;DP=417;Dels=0.00;FS=0.000;HaplotypeScore=3.3561;MLEAC=2;MLEAF=1.00;MQ=23.47;MQ0=184;MQRankSum=-0.468;QD=11.31;ReadPosRankSum=-0.899;SB=-2.131e+03	GT:AD:DP:GQ:PL	1/1:10,407:417:99:4715,490,0
chrXII	5683	.	C	A	5871.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=363;Dels=0.00;FS=3.400;HaplotypeScore=304.7068;MLEAC=2;MLEAF=1.00;MQ=29.72;MQ0=54;MQRankSum=0.901;QD=16.17;ReadPosRankSum=3.499;SB=-2.087e+03	GT:AD:DP:GQ:PL	1/1:56,305:362:99:5871,329,0
chrXII	5736	.	T	C	560.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DP=111;Dels=0.00;FS=20.647;HaplotypeScore=53.7690;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=5;MQRankSum=-2.042;QD=5.05;ReadPosRankSum=-2.638;SB=-3.020e+02	GT:AD:DP:GQ:PL	0/1:25,86:111:99:590,0,243
chrXII	5741	.	T	C	98.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.017;DP=163;Dels=0.00;FS=29.341;HaplotypeScore=33.0085;MLEAC=1;MLEAF=0.500;MQ=22.08;MQ0=7;MQRankSum=4.438;QD=0.60;ReadPosRankSum=5.449;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:150,13:163:99:128,0,874
chrXII	5747	.	T	G	605.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;DP=200;Dels=0.00;FS=50.239;HaplotypeScore=37.4951;MLEAC=1;MLEAF=0.500;MQ=20.42;MQ0=7;MQRankSum=-4.006;QD=3.03;ReadPosRankSum=-1.528;SB=-3.200e+02	GT:AD:DP:GQ:PL	0/1:31,169:200:99:635,0,365
chrXII	5757	.	A	T	108.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;DP=248;Dels=0.00;FS=37.560;HaplotypeScore=24.8045;MLEAC=1;MLEAF=0.500;MQ=18.66;MQ0=23;MQRankSum=4.331;QD=0.44;ReadPosRankSum=4.047;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:226,13:248:99:138,0,940
chrXII	5803	.	C	T	1026	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;DP=115;Dels=0.00;FS=3.166;HaplotypeScore=31.4992;MLEAC=2;MLEAF=1.00;MQ=20.84;MQ0=9;MQRankSum=-0.876;QD=8.92;ReadPosRankSum=0.917;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:1,100:115:89:1059,89,0
chrXII	5807	.	C	G	605.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;DP=83;Dels=0.00;FS=91.465;HaplotypeScore=8.8809;MLEAC=1;MLEAF=0.500;MQ=23.90;MQ0=8;MQRankSum=5.250;QD=7.29;ReadPosRankSum=-2.634;SB=-2.001e+01	GT:AD:DP:GQ:PL	0/1:45,35:83:99:635,0,200
chrXII	5943	.	T	C	1393	filter	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=21;QD=9.88;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:18,123:141:99:1426,159,0
chrXII	5952	.	T	C	1485	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.5940;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=27;QD=8.74;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:16,154:170:99:1518,180,0
chrXII	5957	.	T	C	1470	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=5.8475;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=30;MQRankSum=-0.141;QD=8.21;ReadPosRankSum=-1.536;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:18,161:179:99:1503,158,0
chrXII	5962	.	T	C	1759	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=7.3893;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=32;QD=9.21;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:12,179:191:99:1792,198,0
chrXII	5966	.	C	G	1812	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=10.4109;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=40;QD=8.59;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:12,195:211:99:1845,201,0
chrXII	6116	.	T	C	138.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;DP=340;Dels=0.00;FS=0.000;HaplotypeScore=12.0505;MLEAC=1;MLEAF=0.500;MQ=8.40;MQ0=303;MQRankSum=-1.417;QD=0.41;ReadPosRankSum=-3.043;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,316:340:99:168,0,114
chrXII	10965	.	T	C	242	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.42;MQ0=29;QD=5.38;SB=-1.302e-02	GT:AD:DP:GQ:PL	1/1:0,45:45:30:275,30,0
chrXII	10994	.	C	A	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.59;MQ0=48;MQRankSum=0.742;QD=0.49;ReadPosRankSum=0.742;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:5,50:55:6:58,6,0
chrXII	11181	.	C	A	2839	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.526;DP=378;Dels=0.00;FS=95.088;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=24.20;MQ0=202;MQRankSum=4.641;QD=7.51;ReadPosRankSum=-3.768;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:19,359:378:99:2872,279,0
chrXII	11182	.	A	G	2770	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602;DP=374;Dels=0.00;FS=95.088;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=198;MQRankSum=4.670;QD=7.41;ReadPosRankSum=-4.208;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:21,353:374:99:2803,279,0
chrXII	11448	.	T	C	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.231;DP=13;Dels=0.00;FS=6.640;HaplotypeScore=14.0111;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=0;MQRankSum=2.392;QD=1.45;ReadPosRankSum=0.540;SB=-4.731e+01	GT:AD:DP:GQ:PL	1/1:4,9:13:6:50,6,0
chrXII	11497	.	T	C	104.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DP=15;Dels=0.00;FS=5.119;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=2;MQRankSum=-0.668;QD=6.95;ReadPosRankSum=-0.935;SB=-4.414e+01	GT:AD:DP:GQ:PL	1/1:1,14:15:15:137,15,0
chrXII	11531	.	T	C	95.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.998;DP=18;Dels=0.00;FS=6.990;HaplotypeScore=4.8617;MLEAC=2;MLEAF=1.00;MQ=22.72;MQ0=2;MQRankSum=0.473;QD=5.29;ReadPosRankSum=-0.053;SB=3.27	GT:AD:DP:GQ:PL	1/1:10,8:18:15:128,15,0
chrXII	11547	.	C	T	70.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=7.7561;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=1;MQRankSum=0.822;QD=4.70;ReadPosRankSum=0.091;SB=1.61	GT:AD:DP:GQ:PL	1/1:3,12:15:12:103,12,0
chrXII	11551	.	A	G	65.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=7.7561;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=1;MQRankSum=1.344;QD=4.37;ReadPosRankSum=0.636;SB=2.49	GT:AD:DP:GQ:PL	1/1:5,10:15:12:98,12,0
chrXII	11687	.	T	C	84.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;DP=65;Dels=0.00;FS=5.319;HaplotypeScore=39.5356;MLEAC=1;MLEAF=0.500;MQ=18.14;MQ0=17;MQRankSum=-0.845;QD=1.29;ReadPosRankSum=3.274;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:47,18:65:99:114,0,224
chrXII	11692	.	T	A,C	192.01	filter	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.387;DP=68;Dels=0.00;FS=14.137;HaplotypeScore=24.6277;MLEAC=1,1;MLEAF=0.500,0.500;MQ=19.08;MQ0=20;MQRankSum=0.972;QD=2.82;ReadPosRankSum=2.185;SB=-5.099e+01	GT:AD:DP:GQ:PL	1/2:41,8,19:68:80:252,80,121,119,0,161
chrXII	11717	.	T	C	278.64	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700;DP=67;Dels=0.00;FS=20.271;HaplotypeScore=7.1599;MLEAC=1;MLEAF=0.500;MQ=19.84;MQ0=19;MQRankSum=-1.069;QD=4.16;ReadPosRankSum=0.724;SB=-1.116e+02	GT:AD:DP:GQ:PL	0/1:29,37:67:5:308,0,5
chrXII	11774	.	C	A	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.406;DP=31;Dels=0.00;FS=3.979;HaplotypeScore=10.9860;MLEAC=2;MLEAF=1.00;MQ=13.53;MQ0=24;MQRankSum=0.988;QD=0.83;ReadPosRankSum=-0.988;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:28,3:31:6:57,6,0
chrXII	11846	.	T	C	117.13	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.25;MQ0=22;QD=3.45;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:2,31:34:18:150,18,0
chrXII	11874	.	T	C	175.03	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=15.12;MQ0=20;QD=4.86;SB=-3.878e-02	GT:AD:DP:GQ:PL	1/1:0,36:36:24:208,24,0
chrXII	11879	.	C	G	71.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=14.92;MQ0=21;MQRankSum=1.418;QD=1.92;ReadPosRankSum=2.048;SB=9.690e-03	GT:AD:DP:GQ:PL	0/1:17,20:37:26:101,0,26
chrXII	11915	.	G	A	77.27	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=1;MLEAF=0.500;MQ=16.03;MQ0=9;MQRankSum=0.480;QD=4.07;ReadPosRankSum=1.733;SB=-3.025e+01	GT:AD:DP:GQ:PL	0/1:8,11:19:9:107,0,9
chrXII	11921	.	A	G	181.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=16.24;MQ0=9;MQRankSum=-1.783;QD=7.58;ReadPosRankSum=0.764;SB=-2.772e+01	GT:AD:DP:GQ:PL	1/1:8,16:24:9:214,9,0
chrXII	11949	.	A	G	84.27	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.80;MQ0=15;MQRankSum=-0.747;QD=3.66;ReadPosRankSum=-0.747;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:13,10:23:9:114,0,9
chrXII	11965	.	G	A	132.06	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.02;MQ0=22;QD=4.55;SB=-2.794e+01	GT:AD:DP:GQ:PL	1/1:7,22:29:21:165,21,0
chrXII	11978	.	A	G	85.34	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.16;MQ0=22;MQRankSum=0.573;QD=2.75;ReadPosRankSum=2.054;SB=-2.817e+01	GT:AD:DP:GQ:PL	0/1:25,6:31:8:115,0,8
chrXII	11993	.	C	T	82.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.33;MQ0=21;MQRankSum=2.054;QD=2.74;ReadPosRankSum=0.248;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:24,6:30:15:115,15,0
chrXII	12066	.	T	A	30.77	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.61;MQ0=31;QD=0.90;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:31,3:34:6:62,6,0
chrXII	12069	.	C	A	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.61;MQ0=31;QD=0.67;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:31,3:34:6:54,6,0
chrXII	12070	.	G	T	25.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.61;MQ0=31;QD=0.76;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:30,3:34:6:57,6,0
chrXII	12072	.	A	C	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.50;MQ0=32;QD=0.71;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:32,3:35:6:56,6,0
chrXII	16745	.	G	A	922	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=18.82;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:955,99,0
chrXII	17262	.	C	T	990	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=19.41;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1023,105,0
chrXII	17299	.	A	G	1175	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.61;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1208,129,0
chrXII	18460	.	C	T	1134	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=18.90;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1167,120,0
chrXII	18491	.	G	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9308;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=19.28;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1421,156,0
chrXII	18699	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.18;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1331,141,0
chrXII	19080	.	C	T	1846	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.338;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.636;QD=22.79;ReadPosRankSum=-0.373;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1879,176,0
chrXII	19191	.	T	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.04;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1289,135,0
chrXII	19236	.	A	G	1411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.391;QD=19.33;ReadPosRankSum=1.683;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:99:1444,156,0
chrXII	19419	.	A	G	1683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=2.992;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.276;QD=22.14;ReadPosRankSum=2.385;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1716,183,0
chrXII	19593	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=21.27;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1139,117,0
chrXII	19608	.	G	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.44;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1137,120,0
chrXII	19788	.	A	G	1598	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=23.50;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1631,174,0
chrXII	19819	.	T	G	1567	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1575;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;QD=19.84;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1600,177,0
chrXII	19832	.	C	T	1322	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=20.34;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1355,141,0
chrXII	19877	.	C	T	943	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=17.15;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:976,102,0
chrXII	19889	.	G	A	955	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=17.05;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:988,102,0
chrXII	19910	.	A	T	1079	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=80;Dels=0.00;FS=22.400;HaplotypeScore=15.6249;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;MQRankSum=-0.834;QD=13.49;ReadPosRankSum=2.911;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:3,77:80:99:1112,120,0
chrXII	19941	.	A	C	611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.774;DP=64;Dels=0.00;FS=35.200;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.250;QD=9.55;ReadPosRankSum=3.988;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:6,57:64:69:644,69,0
chrXII	20003	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6232;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=20.92;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1539,156,0
chrXII	20019	.	C	T	1427	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=19.03;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1460,156,0
chrXII	20041	.	A	C	1033	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=16.14;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1066,111,0
chrXII	20097	.	C	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.9138;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=11.89;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1091,111,0
chrXII	20103	.	G	C	937	SnpCluster	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.4962;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=10.77;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:970,105,0
chrXII	20108	.	G	C	944	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4725;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=11.95;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:977,102,0
chrXII	20109	.	C	T	894	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4725;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=11.32;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:927,102,0
chrXII	20114	.	C	T	851	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=62.9363;MLEAC=2;MLEAF=1.00;MQ=28.70;MQ0=0;QD=9.67;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:884,99,0
chrXII	20157	.	G	A	991	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=13.04;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1024,108,0
chrXII	20163	.	A	G	869	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=11.29;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:902,99,0
chrXII	20200	.	A	G	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=3.195;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;MQRankSum=0.072;QD=17.57;ReadPosRankSum=1.696;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1720,195,0
chrXII	20228	.	G	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=43.24;MQ0=0;QD=18.50;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:1939,213,0
chrXII	20235	.	G	A	2164	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.44;MQ0=0;QD=20.42;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2197,234,0
chrXII	20241	.	C	T	2334	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=20.65;SB=-1.419e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2367,252,0
chrXII	20301	.	G	A	2772	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=21.66;SB=-1.540e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2805,291,0
chrXII	20344	.	T	A	2514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.2679;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.147;QD=21.31;ReadPosRankSum=1.615;SB=-1.455e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2547,264,0
chrXII	20366	.	T	C	2115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=5.603;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;MQRankSum=-1.830;QD=20.74;ReadPosRankSum=2.911;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:3,98:102:99:2148,231,0
chrXII	20402	.	A	G	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.872;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.5117;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;MQRankSum=0.014;QD=17.36;ReadPosRankSum=0.789;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:2,87:90:99:1595,150,0
chrXII	20423	.	C	G	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.228;DP=82;Dels=0.00;FS=3.245;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;MQRankSum=-0.319;QD=15.44;ReadPosRankSum=0.775;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:1,76:82:99:1299,119,0
chrXII	20452	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=19.42;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1781,192,0
chrXII	20602	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=9.543;HaplotypeScore=8.8657;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;MQRankSum=-0.438;QD=15.37;ReadPosRankSum=2.095;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:2,102:104:99:1632,180,0
chrXII	20619	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=16.76;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1541,165,0
chrXII	20630	.	C	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=17.47;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1710,180,0
chrXII	20686	.	C	T	1208	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.1885;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.58;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1241,135,0
chrXII	20945	.	A	C	2162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=103;Dels=0.00;FS=10.249;HaplotypeScore=7.3915;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.777;QD=20.99;ReadPosRankSum=2.330;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:2,101:103:99:2195,231,0
chrXII	20990	.	C	A	1842	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=24.89;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1875,195,0
chrXII	21053	.	T	A	986	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=21.91;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1019,108,0
chrXII	21252	.	T	C	1308	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=16.77;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1341,147,0
chrXII	21370	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.099;QD=22.15;ReadPosRankSum=1.683;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1606,171,0
chrXII	21384	.	T	C	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=1.267;QD=20.30;ReadPosRankSum=1.629;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1393,150,0
chrXII	21405	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.16;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1377,150,0
chrXII	21407	.	G	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=18.51;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1384,144,0
chrXII	21474	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=17.09;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1434,153,0
chrXII	21693	.	C	G	2125	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=23.10;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2158,231,0
chrXII	21830	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.00;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1325,144,0
chrXII	21837	.	C	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.42;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1363,150,0
chrXII	21869	.	A	G	1313	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=16.83;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1346,147,0
chrXII	21957	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.93;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1468,159,0
chrXII	21959	.	C	T	1489	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=20.97;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1522,162,0
chrXII	22019	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;QD=15.59;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1062,117,0
chrXII	22028	.	A	G	951	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=15.59;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:984,105,0
chrXII	22049	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=18.21;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1144,123,0
chrXII	22074	.	T	C	988	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=14.97;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1021,111,0
chrXII	22078	.	A	G	970	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4696;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=15.16;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1003,108,0
chrXII	22083	.	T	C	1046	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=15.38;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1079,117,0
chrXII	22201	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.66;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1603,171,0
chrXII	22395	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.38;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1380,147,0
chrXII	22436	.	G	A	1324	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=17.19;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1357,156,0
chrXII	22437	.	G	A	1433	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.90;MQ0=0;QD=19.11;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1466,159,0
chrXII	22443	.	A	G	1393	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=18.57;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1426,162,0
chrXII	22491	.	G	A	2038	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=17.13;SB=-1.429e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2071,231,0
chrXII	22509	.	G	A	2049	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=18.13;SB=-1.395e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2082,228,0
chrXII	22572	.	G	A	2038	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.40;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2071,216,0
chrXII	22603	.	T	C	1978	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=25.36;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2011,210,0
chrXII	22642	.	G	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.08;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1464,153,0
chrXII	22753	.	T	C	2294	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.21;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2327,249,0
chrXII	22902	.	T	A	2271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=110;Dels=0.00;FS=12.307;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.917;QD=20.65;ReadPosRankSum=2.769;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:3,107:110:99:2304,249,0
chrXII	23030	.	A	G	1844	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.62;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1877,201,0
chrXII	23062	.	T	A	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=86;Dels=0.00;FS=3.280;HaplotypeScore=10.7534;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.523;QD=20.13;ReadPosRankSum=1.690;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1764,180,0
chrXII	23159	.	G	A	1924	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.43;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1957,216,0
chrXII	23228	.	A	G	2012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=94;Dels=0.00;FS=3.025;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-2.031;QD=21.40;ReadPosRankSum=2.371;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:2,92:94:99:2045,219,0
chrXII	23264	.	G	C	1929	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.09;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1962,210,0
chrXII	23505	.	A	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=56.8256;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=20.59;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1577,168,0
chrXII	23568	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.8096;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.89;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1579,168,0
chrXII	23820	.	G	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.27;MQ0=0;QD=18.04;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1278,135,0
chrXII	23826	.	C	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=18.00;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1185,126,0
chrXII	23845	.	T	A	850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.843;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;MQRankSum=-1.732;QD=13.93;ReadPosRankSum=1.619;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:93:883,93,0
chrXII	23846	.	C	A	843	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=0;QD=14.05;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:93:876,93,0
chrXII	23860	.	A	G	748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;MQRankSum=0.472;QD=13.60;ReadPosRankSum=1.606;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:84:781,84,0
chrXII	23981	.	C	T	1596	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.78;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1629,174,0
chrXII	24051	.	T	C	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=3.080;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.182;QD=20.23;ReadPosRankSum=1.677;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1328,141,0
chrXII	24179	.	G	A	924	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=18.86;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:957,99,0
chrXII	24246	.	T	G	946	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=20.57;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:979,105,0
chrXII	24279	.	T	C	957	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=21.27;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:990,108,0
chrXII	24315	.	G	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.69;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1088,114,0
chrXII	24323	.	C	T	835	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=16.06;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:93:868,93,0
chrXII	24384	.	T	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=18.41;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1064,114,0
chrXII	24591	.	T	A	1299	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;MQRankSum=-0.490;QD=24.51;ReadPosRankSum=1.667;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1332,135,0
chrXII	24681	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=24.13;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1505,159,0
chrXII	24890	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=22.23;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1656,171,0
chrXII	24893	.	T	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=22.08;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1601,168,0
chrXII	24926	.	G	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.58;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1433,147,0
chrXII	24948	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=21.31;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1482,159,0
chrXII	25143	.	G	A	1141	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=22.82;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1174,126,0
chrXII	25333	.	C	T	859	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=0.510;QD=16.52;ReadPosRankSum=1.664;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:1,51:52:74:892,74,0
chrXII	25369	.	T	G	295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.920;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.4984;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;MQRankSum=-0.089;QD=6.86;ReadPosRankSum=1.801;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:3,40:43:36:328,36,0
chrXII	25388	.	A	T	365	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=35.94;MQ0=0;QD=7.45;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:42:398,42,0
chrXII	25389	.	A	T	365	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.8174;MLEAC=2;MLEAF=1.00;MQ=37.74;MQ0=0;QD=7.02;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:42:398,42,0
chrXII	25411	.	C	T	774	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;QD=13.82;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:807,84,0
chrXII	25449	.	C	T	1008	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=20.57;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1041,111,0
chrXII	25493	.	C	T	1099	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.28;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1132,117,0
chrXII	25499	.	A	G	1038	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.22;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1071,117,0
chrXII	25545	.	C	T	1134	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.4848;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.90;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1167,126,0
chrXII	25640	.	G	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.31;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1171,132,0
chrXII	25817	.	T	G	1987	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.58;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2020,216,0
chrXII	25933	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=2.994;HaplotypeScore=7.0858;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.665;QD=20.02;ReadPosRankSum=2.374;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1334,141,0
chrXII	26176	.	G	A	1464	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.01;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1497,156,0
chrXII	26194	.	C	G	1222	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2398;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=16.74;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1255,132,0
chrXII	26362	.	C	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.78;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1654,177,0
chrXII	27093	.	T	C	2253	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.99;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2286,246,0
chrXII	27180	.	G	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.66;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,70:77:99:1547,174,0
chrXII	27238	.	C	T	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=66;Dels=0.00;FS=3.658;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.199;QD=17.50;ReadPosRankSum=-1.253;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1188,123,0
chrXII	27526	.	A	G	1885	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.1904;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.44;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1918,204,0
chrXII	27921	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=18.81;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1406,153,0
chrXII	28285	.	A	T	1007	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=17.98;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1040,105,0
chrXII	28293	.	T	C	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;DP=64;Dels=0.00;FS=14.322;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.540;QD=15.69;ReadPosRankSum=2.795;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:99:1037,111,0
chrXII	28349	.	C	T	1833	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.07;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1866,201,0
chrXII	28676	.	G	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.94;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1359,147,0
chrXII	28784	.	G	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.71;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1462,153,0
chrXII	28824	.	G	C	1975	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.00;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:2008,213,0
chrXII	28868	.	G	A	2244	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.90;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2277,249,0
chrXII	29085	.	G	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.23;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1364,147,0
chrXII	29137	.	G	A	1626	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.58;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1659,174,0
chrXII	29160	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.09;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1762,177,0
chrXII	29414	.	A	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=20.19;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1103,117,0
chrXII	29437	.	T	C	853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-1.656;QD=15.23;ReadPosRankSum=2.362;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:93:886,93,0
chrXII	29440	.	C	T	886	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=15.54;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:919,99,0
chrXII	29612	.	A	G	1440	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=71;Dels=0.00;FS=2.919;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-1.270;QD=20.28;ReadPosRankSum=2.271;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:2,67:71:99:1473,156,0
chrXII	29773	.	C	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4728;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.79;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1379,144,0
chrXII	29781	.	T	G	1116	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=0.230;QD=18.92;ReadPosRankSum=1.445;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1149,126,0
chrXII	29948	.	T	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.87;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1181,123,0
chrXII	30012	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.209;QD=24.64;ReadPosRankSum=1.667;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1339,144,0
chrXII	30087	.	A	G	1491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=6.5090;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=1.039;QD=22.94;ReadPosRankSum=1.679;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1524,165,0
chrXII	30327	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.89;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1478,159,0
chrXII	30768	.	C	T	2034	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=6.5578;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.75;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2067,228,0
chrXII	30930	.	C	T	2577	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.22;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2610,279,0
chrXII	31128	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.22;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1273,132,0
chrXII	31221	.	T	C	2491	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.44;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2524,273,0
chrXII	31473	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.05;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1224,126,0
chrXII	31777	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=24.67;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1291,132,0
chrXII	31811	.	G	A	857	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.94;MQ0=0;QD=25.97;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:90:890,90,0
chrXII	31830	.	T	C	694	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=23.13;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:75:727,75,0
chrXII	31899	.	T	A	764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.857;DP=51;Dels=0.00;FS=2.470;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;MQRankSum=-1.689;QD=14.98;ReadPosRankSum=2.857;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:3,48:51:84:797,84,0
chrXII	31914	.	C	T	1154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.000;DP=82;Dels=0.00;FS=86.862;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;MQRankSum=3.462;QD=14.07;ReadPosRankSum=5.099;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:19,63:82:99:1187,129,0
chrXII	31962	.	T	C	2468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;MQRankSum=1.033;QD=23.73;ReadPosRankSum=1.699;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2501,267,0
chrXII	31999	.	G	A	2617	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=46.05;MQ0=0;QD=25.16;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2650,273,0
chrXII	32067	.	T	C	1582	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=25.11;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1615,174,0
chrXII	32078	.	C	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.74;MQ0=0;QD=25.30;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1551,162,0
chrXII	32109	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=24.37;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1666,177,0
chrXII	32134	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=21.77;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1470,150,0
chrXII	32177	.	G	T	1968	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=22.62;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2001,210,0
chrXII	32189	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=1.039;QD=20.51;ReadPosRankSum=1.689;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1694,183,0
chrXII	32608	.	T	A	863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=61;Dels=0.05;FS=6.730;HaplotypeScore=7.2483;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=-1.257;QD=14.15;ReadPosRankSum=2.365;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:93:896,93,0
chrXII	32614	.	A	G	1009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=3.085;HaplotypeScore=7.2019;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;MQRankSum=0.617;QD=16.82;ReadPosRankSum=1.674;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1042,111,0
chrXII	32690	.	T	C	1719	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=23.87;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1752,189,0
chrXII	33042	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.41;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1392,150,0
chrXII	33093	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.192;QD=19.00;ReadPosRankSum=1.642;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1515,162,0
chrXII	33112	.	A	G	1606	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.07;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1639,171,0
chrXII	33549	.	T	C	2382	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.69;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2415,258,0
chrXII	35190	.	A	G	726	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=13.96;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:759,81,0
chrXII	35196	.	A	G	671	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=13.98;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:72:704,72,0
chrXII	35207	.	C	T	658	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=13.71;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:69:691,69,0
chrXII	35209	.	A	T	640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=34.17;MQ0=0;MQRankSum=1.945;QD=13.06;ReadPosRankSum=2.249;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:2,47:49:69:673,69,0
chrXII	35238	.	T	G	274	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;MQRankSum=-0.391;QD=8.84;ReadPosRankSum=-0.168;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:1,30:31:33:307,33,0
chrXII	35267	.	T	C	269	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=10.35;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:33:302,33,0
chrXII	35464	.	C	G	795	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=17.28;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:87:828,87,0
chrXII	35481	.	T	C	793	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.86;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:87:826,87,0
chrXII	35482	.	A	G	771	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.42;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:87:804,87,0
chrXII	35616	.	T	C	646	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=24.85;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:72:679,72,0
chrXII	35626	.	G	A	633	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=24.35;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:69:666,69,0
chrXII	35671	.	C	T	311	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.94;MQ0=0;QD=16.37;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:36:344,36,0
chrXII	35677	.	T	C	224.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;MQRankSum=-1.073;QD=10.67;ReadPosRankSum=1.404;SB=-8.602e+01	GT:AD:DP:GQ:PL	1/1:1,20:21:27:257,27,0
chrXII	35727	.	C	T	514	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=19.04;SB=-1.210e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:57:547,57,0
chrXII	35779	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=24.12;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1215,129,0
chrXII	35952	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=20.57;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1370,138,0
chrXII	35965	.	T	C	1124	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.84;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1157,126,0
chrXII	36125	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.64;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1338,153,0
chrXII	36134	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=17.20;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1409,153,0
chrXII	36230	.	T	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.67;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1284,138,0
chrXII	36298	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.11;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1600,174,0
chrXII	36311	.	C	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=18.28;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1404,147,0
chrXII	36398	.	T	C	1442	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=21.52;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1475,156,0
chrXII	36458	.	T	A	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.268;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=1.498;QD=22.12;ReadPosRankSum=1.685;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1670,174,0
chrXII	36477	.	C	G	1729	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=23.36;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1762,189,0
chrXII	36561	.	G	A	1018	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.1077;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=19.21;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1051,108,0
chrXII	36662	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=16.4924;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=19.69;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1195,123,0
chrXII	36694	.	T	C	889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.730;QD=23.39;ReadPosRankSum=1.641;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:96:922,96,0
chrXII	36777	.	G	A	821	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=19.55;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:854,87,0
chrXII	36792	.	T	C	693	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=16.90;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:78:726,78,0
chrXII	36833	.	T	G	442	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=10.78;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:51:475,51,0
chrXII	36841	.	C	T	321	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.73;MQ0=0;QD=8.92;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:36:354,36,0
chrXII	36842	.	C	T	304	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.50;MQ0=0;QD=8.22;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:36:337,36,0
chrXII	36846	.	T	A	362	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;MQRankSum=-1.575;QD=8.04;ReadPosRankSum=1.654;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:42:395,42,0
chrXII	36882	.	G	C	879	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=18.31;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:912,96,0
chrXII	36936	.	G	A	1583	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=24.73;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1616,165,0
chrXII	36981	.	A	G	1063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=5.586;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;MQRankSum=-0.661;QD=18.65;ReadPosRankSum=2.877;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:3,54:57:99:1096,117,0
chrXII	36985	.	G	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=18.67;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1116,114,0
chrXII	37014	.	C	T	465	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=10.81;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:60:498,60,0
chrXII	37015	.	T	C	433	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;QD=10.07;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:57:466,57,0
chrXII	37050	.	T	C	632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-1.377;QD=16.21;ReadPosRankSum=1.555;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:72:665,72,0
chrXII	37123	.	A	C	911	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=21.69;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:944,99,0
chrXII	37151	.	A	G	1055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;MQRankSum=-0.289;QD=21.53;ReadPosRankSum=1.660;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:1088,117,0
chrXII	37196	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=25.82;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1505,153,0
chrXII	40119	.	G	A	1968	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2001,207,0
chrXII	40743	.	C	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.4547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.01;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1588,165,0
chrXII	46479	.	T	G	2228	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.0242;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.540;QD=21.84;ReadPosRankSum=1.872;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:2,96:102:99:2261,237,0
chrXII	46816	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.35;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1262,132,0
chrXII	47080	.	C	T	1052	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.8345;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=1.091;QD=19.48;ReadPosRankSum=1.347;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1085,111,0
chrXII	47086	.	T	C	929	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=9.9888;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=1.529;QD=17.87;ReadPosRankSum=1.461;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:962,105,0
chrXII	47158	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.505;QD=22.08;ReadPosRankSum=1.675;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1380,147,0
chrXII	47526	.	C	T	2903	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=26.63;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2936,295,0
chrXII	47553	.	T	A	12.30	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=351.8051;MLEAC=1;MLEAF=0.500;MQ=56.28;MQ0=0;MQRankSum=-0.042;QD=0.13;ReadPosRankSum=-2.822;SB=-8.303e+01	GT:AD:DP:GQ:PL	0/1:93,3:96:19:42,0,19
chrXII	47649	.	T	C	1059	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.53;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1092,117,0
chrXII	47928	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=1;QD=23.21;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,55:58:99:1379,147,0
chrXII	48092	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=4.009;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=1;MQRankSum=1.637;QD=18.93;ReadPosRankSum=1.685;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1434,156,0
chrXII	48294	.	T	C	1966	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.69;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1999,213,0
chrXII	48690	.	G	T	946	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=15.26;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:979,108,0
chrXII	48833	.	T	A	425	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=15.74;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:51:458,51,0
chrXII	48880	.	G	A	44.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;DP=64;Dels=0.03;FS=28.356;HaplotypeScore=18.3983;MLEAC=1;MLEAF=0.500;MQ=47.92;MQ0=1;MQRankSum=-3.432;QD=0.69;ReadPosRankSum=-2.051;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,27:62:74:74,0,287
chrXII	49074	.	T	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.53;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1233,132,0
chrXII	49339	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.09;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1339,144,0
chrXII	49346	.	T	C	1145	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=17.89;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1178,129,0
chrXII	49413	.	G	A	1277	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.95;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1310,129,0
chrXII	49459	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.42;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1483,153,0
chrXII	49467	.	G	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.80;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1368,141,0
chrXII	49638	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.90;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1588,171,0
chrXII	49821	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=21.03;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1274,132,0
chrXII	49907	.	C	T	1857	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.43;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1890,195,0
chrXII	50192	.	A	G	1972	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=7.743;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.138;QD=17.45;ReadPosRankSum=1.671;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2005,213,0
chrXII	50256	.	A	G	2524	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.59;SB=-1.301e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2557,264,0
chrXII	50531	.	C	T	1784	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=16.37;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:1817,201,0
chrXII	50744	.	C	T	1477	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.23;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1510,156,0
chrXII	50774	.	T	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.09;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1158,126,0
chrXII	50819	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.52;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1407,144,0
chrXII	50921	.	G	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.99;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1452,165,0
chrXII	50984	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.342;QD=15.90;ReadPosRankSum=1.635;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1162,123,0
chrXII	51069	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.069;HaplotypeScore=7.9703;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.640;QD=20.85;ReadPosRankSum=1.686;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1597,171,0
chrXII	51125	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.79;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1602,174,0
chrXII	51284	.	G	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.94;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1907,198,0
chrXII	51489	.	A	G	1109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.9004;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.742;QD=17.60;ReadPosRankSum=1.677;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1142,123,0
chrXII	51794	.	C	T	673	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.69;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:72:706,72,0
chrXII	51800	.	A	G	517	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.77;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:60:550,60,0
chrXII	51952	.	A	G	1319	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.36;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1352,144,0
chrXII	51956	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.41;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1339,141,0
chrXII	52186	.	T	C	824	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=26.58;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:93:857,93,0
chrXII	52232	.	A	G	610	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=24.40;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:69:643,69,0
chrXII	52409	.	T	C	4154.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=173;Dels=0.00;FS=2.993;HaplotypeScore=10.4307;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=0.192;QD=24.01;ReadPosRankSum=2.421;SB=-2.059e+03	GT:AD:DP:GQ:PL	1/1:2,171:173:99:4154,444,0
chrXII	52489	.	T	C	2164	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.04;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2197,234,0
chrXII	52540	.	G	A	905	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:938,93,0
chrXII	52646	.	T	C	1496	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=16.26;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1529,159,0
chrXII	52661	.	A	T	1749	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=16.19;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1782,192,0
chrXII	52673	.	G	T	2373	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=18.40;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2406,249,0
chrXII	52682	.	C	T	2393	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.47;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2426,273,0
chrXII	52829	.	A	G	829	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.12;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:90:862,90,0
chrXII	53017	.	G	T	1940	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.0973;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=23.10;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1973,210,0
chrXII	53075	.	C	T	1977	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=20.81;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2010,204,0
chrXII	53089	.	G	A	1894	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.53;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1927,198,0
chrXII	53554	.	G	A	2786	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.04;SB=-1.765e+03	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2819,303,0
chrXII	53575	.	G	A	2542	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=18.29;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2575,282,0
chrXII	53904	.	C	T	2200	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=14.3797;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=18.80;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,113:117:99:2233,228,0
chrXII	54071	.	A	T	2305	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=26.80;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2338,234,0
chrXII	54226	.	A	G	2677	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.31;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2710,294,0
chrXII	54244	.	T	C	3159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.845;QD=21.79;ReadPosRankSum=2.211;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:2,142:145:99:3192,333,0
chrXII	54357	.	A	G	1733	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1766,189,0
chrXII	54748	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.44;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1604,168,0
chrXII	55033	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.52;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1407,141,0
chrXII	55090	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.24;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1201,129,0
chrXII	55390	.	G	A	1037	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.74;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1070,111,0
chrXII	55507	.	G	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.33;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1641,168,0
chrXII	55528	.	G	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.30;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1594,168,0
chrXII	60197	.	G	A	1839	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.88;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1872,192,0
chrXII	62362	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.90;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1107,117,0
chrXII	62374	.	C	T	1073	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.51;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1106,114,0
chrXII	63675	.	C	T	2701	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.55;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2734,277,0
chrXII	63859	.	C	G	1866	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.48;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1899,198,0
chrXII	63864	.	C	T	1812	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.83;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1845,186,0
chrXII	64511	.	C	T	1299.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.669;DP=127;Dels=0.00;FS=15.097;HaplotypeScore=8.1283;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=0;MQRankSum=2.177;QD=10.23;ReadPosRankSum=0.080;SB=-2.230e+02	GT:AD:DP:GQ:PL	0/1:51,76:127:99:1329,0,542
chrXII	64614	.	A	G	1438	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.6994;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=19.70;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1471,156,0
chrXII	64620	.	A	G	254.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;DP=76;Dels=0.00;FS=52.652;HaplotypeScore=4.9392;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=0;MQRankSum=0.109;QD=3.34;ReadPosRankSum=0.418;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:54,22:76:99:284,0,891
chrXII	64644	.	A	G	24.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;DP=62;Dels=0.00;FS=12.649;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=44.23;MQ0=0;MQRankSum=-1.288;QD=0.39;ReadPosRankSum=-1.591;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,14:62:54:54,0,865
chrXII	64830	.	T	C	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;DP=46;Dels=0.00;FS=25.037;HaplotypeScore=7.8868;MLEAC=1;MLEAF=0.500;MQ=21.51;MQ0=0;MQRankSum=2.637;QD=0.23;ReadPosRankSum=-2.294;SB=-1.975e+01	GT:AD:DP:GQ:PL	0/1:36,8:46:34:40,0,34
chrXII	64833	.	C	T	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=0;QD=0.64;SB=-3.264e+01	GT:AD:DP:GQ:PL	1/1:0,37:42:6:58,6,0
chrXII	64854	.	C	T	233.01	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=26.34;MQ0=0;QD=5.42;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:27:266,27,0
chrXII	64857	.	C	T	332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.320;DP=51;Dels=0.00;FS=33.526;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;MQRankSum=5.571;QD=6.51;ReadPosRankSum=-0.341;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:15,36:51:39:365,39,0
chrXII	64866	.	C	T	319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.817;DP=50;Dels=0.00;FS=36.222;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=0;MQRankSum=5.012;QD=6.38;ReadPosRankSum=3.115;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:11,39:50:36:352,36,0
chrXII	65031	.	G	A	28.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=88;Dels=0.00;FS=2.345;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=50.20;MQ0=1;MQRankSum=-5.884;QD=0.32;ReadPosRankSum=-2.489;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,19:88:58:58,0,1225
chrXII	65058	.	T	C	100.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.002;DP=100;Dels=0.00;FS=2.970;HaplotypeScore=5.7153;MLEAC=1;MLEAF=0.500;MQ=47.78;MQ0=1;MQRankSum=-6.646;QD=1.00;ReadPosRankSum=2.154;SB=-2.140e+02	GT:AD:DP:GQ:PL	0/1:68,32:100:99:130,0,1150
chrXII	65061	.	C	T	146.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.933;DP=97;Dels=0.00;FS=3.057;HaplotypeScore=5.7153;MLEAC=1;MLEAF=0.500;MQ=47.29;MQ0=1;MQRankSum=-6.540;QD=1.51;ReadPosRankSum=2.335;SB=-2.340e+02	GT:AD:DP:GQ:PL	0/1:63,33:97:99:176,0,1037
chrXII	65485	.	C	T	597	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=18.66;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:69:630,69,0
chrXII	65517	.	T	C	548	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.95;MQ0=0;QD=17.68;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:66:581,66,0
chrXII	65523	.	A	T	577	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=18.03;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:63:610,63,0
chrXII	65695	.	C	A	1974	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.78;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2007,207,0
chrXII	65728	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.12;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1513,165,0
chrXII	65835	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.52;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1367,144,0
chrXII	65841	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=19.83;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1203,123,0
chrXII	65892	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.75;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1277,138,0
chrXII	65992	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.96;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1731,177,0
chrXII	66338	.	G	A	2467	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=24.67;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2500,258,0
chrXII	66595	.	A	G	1849	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.8040;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=16.08;SB=-1.402e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:1882,201,0
chrXII	66624	.	T	C	202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.261;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=249.5838;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;MQRankSum=1.608;QD=1.22;ReadPosRankSum=-6.073;SB=-8.200e+01	GT:AD:DP:GQ:PL	1/1:136,29:166:30:235,30,0
chrXII	66632	.	T	C	12.99	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.207;DP=165;Dels=0.00;FS=2.611;HaplotypeScore=234.9902;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=0;MQRankSum=-1.140;QD=0.08;ReadPosRankSum=-4.979;SB=-1.278e+02	GT:AD:DP:GQ:PL	1/1:134,31:165:6:44,6,0
chrXII	66637	.	C	T	2231	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=113.8797;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=14.58;SB=-1.856e+03	GT:AD:DP:GQ:PL	1/1:0,153:153:99:2264,240,0
chrXII	66658	.	G	T	2648	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;QD=16.05;SB=-1.977e+03	GT:AD:DP:GQ:PL	1/1:0,165:165:99:2681,279,0
chrXII	66688	.	G	T	3270.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=21.66;SB=-1.957e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3270,334,0
chrXII	66714	.	T	C	2694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=132;Dels=0.00;FS=3.282;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=0.131;QD=20.41;ReadPosRankSum=-0.026;SB=-1.583e+03	GT:AD:DP:GQ:PL	1/1:1,131:132:99:2727,300,0
chrXII	66748	.	G	A	2211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=103;Dels=0.01;FS=0.000;HaplotypeScore=5.2109;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.595;QD=21.47;ReadPosRankSum=1.664;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2244,228,0
chrXII	66774	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.642;QD=18.48;ReadPosRankSum=1.693;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:1,89:94:99:1770,186,0
chrXII	66854	.	T	G	1764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.691;DP=84;Dels=0.00;FS=3.445;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-0.660;QD=21.00;ReadPosRankSum=1.691;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1797,174,0
chrXII	66871	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=18.52;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1515,159,0
chrXII	66885	.	T	C	1495	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=18.23;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1528,159,0
chrXII	67183	.	G	A	1692	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.91;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1725,177,0
chrXII	67247	.	A	G	1319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=3.819;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.013;QD=24.43;ReadPosRankSum=1.667;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1352,141,0
chrXII	67582	.	T	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.18;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1126,120,0
chrXII	67726	.	T	C	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.666;QD=21.62;ReadPosRankSum=-0.666;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1157,126,0
chrXII	68071	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.51;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1373,147,0
chrXII	68253	.	G	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.2723;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.68;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1594,165,0
chrXII	68368	.	T	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=17.16;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1320,135,0
chrXII	68373	.	A	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=14.53;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1239,135,0
chrXII	68671	.	A	G	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.457;QD=22.25;ReadPosRankSum=1.677;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1435,153,0
chrXII	69006	.	T	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.83;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1560,171,0
chrXII	69128	.	G	A	2088	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.46;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2121,213,0
chrXII	70044	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.83;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1920,198,0
chrXII	70244	.	C	T	1877	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.46;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1910,198,0
chrXII	70508	.	A	G	2580	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.86;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2613,279,0
chrXII	70541	.	A	T	3083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.762;QD=20.28;ReadPosRankSum=1.709;SB=-1.470e+03	GT:AD:DP:GQ:PL	1/1:1,151:152:99:3116,339,0
chrXII	71063	.	C	G	1665	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.82;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1698,180,0
chrXII	71722	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.33;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1529,159,0
chrXII	72520	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.792;QD=21.23;ReadPosRankSum=1.683;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1519,162,0
chrXII	72632	.	T	C	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=79;Dels=0.00;FS=2.963;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-2.039;QD=21.57;ReadPosRankSum=2.387;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:2,76:79:99:1737,186,0
chrXII	72987	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.65;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1570,165,0
chrXII	73290	.	C	A	1548	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.76;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1581,162,0
chrXII	73717	.	T	G	2241	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.97;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2274,240,0
chrXII	73718	.	C	G	2213	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.13;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2246,234,0
chrXII	73752	.	G	A	1630	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.64;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1663,168,0
chrXII	73830	.	T	C	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=5.006;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.504;QD=20.71;ReadPosRankSum=1.550;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1648,177,0
chrXII	74641	.	T	C	2164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.147;QD=22.54;ReadPosRankSum=1.658;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,93:96:99:2197,240,0
chrXII	74872	.	C	T	1016	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-1.230e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1049,108,0
chrXII	75086	.	A	C	2885	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-1.607e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2918,306,0
chrXII	75903	.	C	T	2465	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.41;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2498,258,0
chrXII	76057	.	G	A	2035	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=20.35;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2068,216,0
chrXII	76544	.	A	T	2204	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.68;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2237,231,0
chrXII	76603	.	G	T	1887	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.7022;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.29;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1920,201,0
chrXII	76840	.	T	C	917	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.92;SB=-2.340e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:99:950,102,0
chrXII	76842	.	G	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=24.57;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1065,111,0
chrXII	76925	.	A	G	1194	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.59;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1227,132,0
chrXII	77139	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.87;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1269,129,0
chrXII	77520	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.43;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1392,141,0
chrXII	77743	.	A	C	1223	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.73;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1256,138,0
chrXII	78276	.	G	A	1916	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7526;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.77;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1949,204,0
chrXII	78394	.	C	T	1758	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.83;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1791,180,0
chrXII	79336	.	G	A	2177	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.99;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2210,228,0
chrXII	79798	.	G	C	2419	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.5794;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.05;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2452,267,0
chrXII	79987	.	C	T	967	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.59;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1000,102,0
chrXII	80023	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.64;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1278,135,0
chrXII	80089	.	C	T	1457	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.43;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1490,162,0
chrXII	80880	.	T	G	903	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.933;QD=22.57;ReadPosRankSum=1.644;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:1,38:40:99:936,99,0
chrXII	81026	.	C	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=19.29;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1441,150,0
chrXII	81045	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;MQRankSum=-0.253;QD=15.56;ReadPosRankSum=1.696;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1527,168,0
chrXII	81096	.	G	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.55;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1615,165,0
chrXII	81240	.	C	T	970	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.32;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1003,105,0
chrXII	82033	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.82;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1495,159,0
chrXII	82171	.	A	G	1599	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.50;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1632,174,0
chrXII	82288	.	T	C	1260	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.36;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1293,141,0
chrXII	82321	.	C	T	1072	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=18.17;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:99:1105,117,0
chrXII	82757	.	A	G	1178	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.63;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1211,129,0
chrXII	82779	.	A	T	995	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9106;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=15.55;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1028,111,0
chrXII	82792	.	A	G	946	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=15.02;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:979,105,0
chrXII	82946	.	T	C	1207	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1240,135,0
chrXII	83008	.	C	G	1328	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.12;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1361,150,0
chrXII	84031	.	C	T	1586	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.33;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1619,183,0
chrXII	84147	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.31;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1828,195,0
chrXII	84326	.	C	T	250	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.840;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=10.6701;MLEAC=2;MLEAF=1.00;MQ=33.99;MQ0=0;MQRankSum=0.420;QD=7.14;ReadPosRankSum=-3.479;SB=-2.268e+02	GT:AD:DP:GQ:PL	1/1:5,23:35:30:283,30,0
chrXII	84397	.	G	C	786	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.68;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:819,87,0
chrXII	84451	.	A	G	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=1.221;QD=19.23;ReadPosRankSum=1.562;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1206,129,0
chrXII	84504	.	G	A	2070	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6712;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.34;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2103,228,0
chrXII	84629	.	A	G	1141	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=22.37;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1174,126,0
chrXII	84631	.	T	C	1161	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.333;QD=22.33;ReadPosRankSum=1.666;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1194,129,0
chrXII	84883	.	T	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.0049;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.44;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1604,171,0
chrXII	85270	.	C	G	1936	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.1951;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.51;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1969,213,0
chrXII	85385	.	G	A	1320	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.86;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1353,141,0
chrXII	85415	.	T	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.40;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1284,138,0
chrXII	85446	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.19;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1547,159,0
chrXII	85580	.	G	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=13.46;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1123,117,0
chrXII	85595	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=13.20;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1102,123,0
chrXII	85632	.	T	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.09;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1541,165,0
chrXII	85856	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=3.012;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.355;QD=22.58;ReadPosRankSum=2.375;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1523,162,0
chrXII	85916	.	T	C	1633	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.37;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1666,180,0
chrXII	86063	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.40;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1468,150,0
chrXII	86087	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.678;QD=17.21;ReadPosRankSum=1.682;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1238,135,0
chrXII	86701	.	A	G	625	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=6.0782;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;QD=15.24;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:72:658,72,0
chrXII	86722	.	A	T	205.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=27.6892;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.471;QD=5.00;ReadPosRankSum=-0.186;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:9,32:41:27:238,27,0
chrXII	86900	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1694,171,0
chrXII	87286	.	C	T	4194.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.73;SB=-1.915e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:4194,439,0
chrXII	87340	.	A	G	2815	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=25.36;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2848,303,0
chrXII	87687	.	T	C	2004	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.66;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2037,213,0
chrXII	88069	.	A	G	1574	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.879;QD=22.81;ReadPosRankSum=1.682;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1607,168,0
chrXII	88422	.	A	T	1117	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=25.39;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1150,117,0
chrXII	88452	.	G	A	950	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.62;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:983,102,0
chrXII	88820	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.65;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1499,153,0
chrXII	89117	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.42;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1490,159,0
chrXII	89597	.	G	A	2088	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.53;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2121,225,0
chrXII	90161	.	C	A	933	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=14.81;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:966,105,0
chrXII	90182	.	T	C	1082	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=16.39;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1115,120,0
chrXII	90629	.	C	G	1467	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.1324;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.66;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1500,162,0
chrXII	91022	.	A	G	2079	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.62;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2112,228,0
chrXII	91140	.	C	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=26.45;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1091,114,0
chrXII	91268	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.42;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1415,147,0
chrXII	91295	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.96;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1680,177,0
chrXII	91366	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.03;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,63:66:99:1487,156,0
chrXII	91389	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.31;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1297,138,0
chrXII	91461	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.393;QD=20.85;ReadPosRankSum=1.409;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1597,168,0
chrXII	91483	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.425;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=0.153;QD=17.48;ReadPosRankSum=0.329;SB=-6.101e+01	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1414,130,0
chrXII	91486	.	T	G	1506	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.933;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;MQRankSum=0.624;QD=18.59;ReadPosRankSum=1.537;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1539,138,0
chrXII	91553	.	A	G	389	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=8.28;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:45:422,45,0
chrXII	91606	.	T	A	1116	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=18.60;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1149,114,0
chrXII	91626	.	C	T	1151	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=18.27;SB=-2.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1184,123,0
chrXII	91644	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=18.81;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1237,129,0
chrXII	91722	.	G	A	1494	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.34;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1527,168,0
chrXII	92203	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=24.44;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1353,135,0
chrXII	92536	.	A	C	1056	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=25.14;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1089,114,0
chrXII	92713	.	A	G	1147	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=51.02;MQ0=0;QD=20.48;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1180,129,0
chrXII	92720	.	A	G	1175	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=20.98;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1208,129,0
chrXII	92916	.	G	A	1614	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=21.81;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1647,183,0
chrXII	93019	.	G	A	2013	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=21.88;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2046,225,0
chrXII	93073	.	G	A	2266	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.89;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2299,246,0
chrXII	93142	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.49;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1675,180,0
chrXII	93274	.	C	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=65.3444;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=18.02;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1601,174,0
chrXII	93308	.	C	T	692	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.32;MQ0=0;QD=15.38;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:78:725,78,0
chrXII	93312	.	A	G	365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.23;MQ0=0;MQRankSum=-1.644;QD=9.36;ReadPosRankSum=1.644;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:51:398,51,0
chrXII	93726	.	T	C	1901	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=22.90;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1934,207,0
chrXII	93768	.	T	C	1594	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=21.84;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1627,174,0
chrXII	93814	.	G	C	1943	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.70;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1976,213,0
chrXII	93860	.	G	T	2063	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.44;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2096,216,0
chrXII	93891	.	C	T	2202	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.18;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2235,237,0
chrXII	93954	.	G	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.61;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1970,216,0
chrXII	94031	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.96;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1455,156,0
chrXII	94032	.	A	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=19.28;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1479,153,0
chrXII	94044	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.19;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1648,168,0
chrXII	94172	.	A	G	2117	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.82;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2150,234,0
chrXII	94458	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.09;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1594,165,0
chrXII	94920	.	C	T	2393	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;QD=23.69;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2426,249,0
chrXII	95188	.	C	T	2368	filter	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=21.93;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2401,243,0
chrXII	95356	.	A	G	134.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.77;SB=-2.907e+01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:167,18,0
chrXII	95641	.	T	A	403	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.59;MQ0=0;QD=23.71;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:45:436,45,0
chrXII	95935	.	A	G	735	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.31;MQ0=24;QD=10.81;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:13,55:68:84:768,84,0
chrXII	95937	.	C	A	727	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=25;QD=10.54;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:13,55:69:84:760,84,0
chrXII	95938	.	A	G	715	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=25;QD=10.36;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:14,55:69:84:748,84,0
chrXII	95944	.	C	T	596	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=24;MQRankSum=0.654;QD=8.64;ReadPosRankSum=1.655;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:15,54:69:78:629,78,0
chrXII	95945	.	T	C	587	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.39;MQ0=24;MQRankSum=-0.423;QD=8.51;ReadPosRankSum=1.655;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:15,54:69:78:620,78,0
chrXII	95992	.	G	A	275	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.24;MQ0=15;QD=6.25;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:13,30:44:33:308,33,0
chrXII	96004	.	C	T	147.13	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.50;MQ0=12;QD=4.60;SB=-1.171e+02	GT:AD:DP:GQ:PL	1/1:12,20:32:18:180,18,0
chrXII	96010	.	A	G	81.51	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.77;MQ0=10;QD=2.91;SB=-5.452e+01	GT:AD:DP:GQ:PL	1/1:10,18:28:12:114,12,0
chrXII	96022	.	G	A	85.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=12;QD=2.95;SB=-6.052e+01	GT:AD:DP:GQ:PL	1/1:12,17:29:12:118,12,0
chrXII	96025	.	G	A	112.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=12;QD=4.16;SB=-6.327e+01	GT:AD:DP:GQ:PL	1/1:12,15:27:15:145,15,0
chrXII	96028	.	G	A	110.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.09;MQ0=13;QD=3.94;SB=-5.927e+01	GT:AD:DP:GQ:PL	1/1:13,15:28:15:143,15,0
chrXII	96034	.	A	G	107.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.13;MQ0=12;QD=4.13;SB=-2.927e+01	GT:AD:DP:GQ:PL	1/1:11,14:26:15:140,15,0
chrXII	96040	.	A	G	155.06	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.38;MQ0=11;QD=6.20;SB=-2.907e+01	GT:AD:DP:GQ:PL	1/1:10,15:25:21:188,21,0
chrXII	96151	.	G	A	987	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=3;QD=18.28;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1020,105,0
chrXII	96166	.	A	G	1086	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;QD=20.11;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1119,117,0
chrXII	96169	.	G	A	1092	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=19.85;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1125,117,0
chrXII	96451	.	T	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.68;MQ0=24;QD=0.76;SB=-2.780e+01	GT:AD:DP:GQ:PL	1/1:14,16:30:6:54,6,0
chrXII	96544	.	A	G	187.03	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.49;MQ0=15;QD=6.93;SB=-3.878e-02	GT:AD:DP:GQ:PL	1/1:7,20:27:24:220,24,0
chrXII	96580	.	C	T	404	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=55;Dels=0.00;FS=13.979;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=30;MQRankSum=1.595;QD=7.35;ReadPosRankSum=1.595;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:13,42:55:48:437,48,0
chrXII	96961	.	G	A	863	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;DP=59;Dels=0.00;FS=6.767;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=20;MQRankSum=1.094;QD=14.63;ReadPosRankSum=-1.368;SB=-6.801e+01	GT:AD:DP:GQ:PL	1/1:12,47:59:75:896,75,0
chrXII	97075	.	G	A	774.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.038;DP=93;Dels=0.00;FS=43.242;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=39.60;MQ0=1;MQRankSum=2.538;QD=8.33;ReadPosRankSum=-0.027;SB=-2.016e+02	GT:AD:DP:GQ:PL	1/1:14,79:93:4:805,4,0
chrXII	97099	.	G	A	583.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;DP=91;Dels=0.00;FS=50.448;HaplotypeScore=2.5352;MLEAC=1;MLEAF=0.500;MQ=36.86;MQ0=3;MQRankSum=2.620;QD=6.41;ReadPosRankSum=-1.781;SB=-1.000e+02	GT:AD:DP:GQ:PL	0/1:15,76:91:51:613,0,51
chrXII	97108	.	C	T	541.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;DP=90;Dels=0.00;FS=71.518;HaplotypeScore=3.3239;MLEAC=1;MLEAF=0.500;MQ=34.80;MQ0=3;MQRankSum=3.804;QD=6.01;ReadPosRankSum=-0.455;SB=-7.002e+01	GT:AD:DP:GQ:PL	0/1:18,72:90:99:571,0,129
chrXII	97129	.	G	A	371.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;DP=90;Dels=0.00;FS=107.451;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=31.73;MQ0=3;MQRankSum=5.014;QD=4.12;ReadPosRankSum=0.728;SB=-3.802e+01	GT:AD:DP:GQ:PL	0/1:21,69:90:99:401,0,168
chrXII	97147	.	G	A	295.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;DP=84;Dels=0.00;FS=131.327;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=28.11;MQ0=3;MQRankSum=5.390;QD=3.51;ReadPosRankSum=0.142;SB=-3.302e+01	GT:AD:DP:GQ:PL	0/1:21,63:84:99:325,0,205
chrXII	97153	.	G	T	276.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;DP=83;Dels=0.00;FS=120.023;HaplotypeScore=2.5707;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=3;MQRankSum=5.234;QD=3.33;ReadPosRankSum=-0.212;SB=-6.702e+01	GT:AD:DP:GQ:PL	0/1:20,63:83:99:306,0,182
chrXII	97159	.	G	A	284.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;DP=87;Dels=0.00;FS=117.477;HaplotypeScore=2.5707;MLEAC=1;MLEAF=0.500;MQ=30.64;MQ0=3;MQRankSum=5.154;QD=3.26;ReadPosRankSum=-1.141;SB=-9.002e+01	GT:AD:DP:GQ:PL	0/1:19,68:87:99:314,0,181
chrXII	97171	.	A	G	485.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;DP=88;Dels=0.00;FS=100.749;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=33.62;MQ0=3;MQRankSum=5.030;QD=5.51;ReadPosRankSum=-2.032;SB=-1.650e+02	GT:AD:DP:GQ:PL	0/1:17,71:88:99:515,0,131
chrXII	97243	.	G	A	2408	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=24.57;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2441,246,0
chrXII	97559	.	T	C	2349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=114;Dels=0.00;FS=3.865;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;MQRankSum=0.495;QD=20.61;ReadPosRankSum=1.670;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2382,258,0
chrXII	97572	.	T	C	2277	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=20.15;SB=-1.376e+03	GT:AD:DP:GQ:PL	1/1:0,109:113:99:2310,252,0
chrXII	97599	.	C	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.21;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1589,168,0
chrXII	97654	.	A	C	1628	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.30;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1661,180,0
chrXII	97693	.	G	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.12;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1625,165,0
chrXII	97828	.	C	T	1623	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.29;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1656,186,0
chrXII	97970	.	T	A	3615.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=8.1270;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=24.26;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3615,399,0
chrXII	98018	.	T	C	2349	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=25.53;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2382,252,0
chrXII	98056	.	T	C	1832	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=25.10;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1865,195,0
chrXII	98390	.	T	C	1663	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.068;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.015;QD=19.56;ReadPosRankSum=2.127;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:2,82:85:99:1696,162,0
chrXII	98471	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.316;DP=93;Dels=0.00;FS=8.225;HaplotypeScore=10.2552;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;MQRankSum=-1.620;QD=22.29;ReadPosRankSum=2.396;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:2,90:93:99:2106,219,0
chrXII	98655	.	G	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1338,138,0
chrXII	99138	.	G	T	805	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.17;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:838,90,0
chrXII	99398	.	G	A	1657	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.97;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1690,174,0
chrXII	100126	.	C	T	808	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=16.49;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:841,87,0
chrXII	100150	.	C	G	803	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=16.73;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:90:836,90,0
chrXII	100682	.	A	G	2879	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.4934;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.61;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2912,318,0
chrXII	101003	.	C	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=19.24;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1861,192,0
chrXII	101009	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.551;QD=18.43;ReadPosRankSum=1.614;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:1,87:91:99:1710,186,0
chrXII	101108	.	G	C	2346	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.00;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2379,246,0
chrXII	101237	.	A	G	1746	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=18.98;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1779,189,0
chrXII	101330	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.14;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1494,156,0
chrXII	101560	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=0.391;QD=18.92;ReadPosRankSum=1.676;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1225,135,0
chrXII	101564	.	T	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.35;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1134,120,0
chrXII	101577	.	G	A	941	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.82;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:974,99,0
chrXII	101720	.	G	A	1121	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=18.38;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1154,117,0
chrXII	101729	.	A	T	1319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=73;Dels=0.00;FS=3.030;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.051;QD=18.07;ReadPosRankSum=2.349;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1352,144,0
chrXII	101786	.	T	C	1279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.293;QD=19.68;ReadPosRankSum=1.679;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1312,144,0
chrXII	101948	.	G	A	978	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=16.86;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1011,105,0
chrXII	101965	.	T	G	1012	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.32;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1045,114,0
chrXII	102152	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.85;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1427,147,0
chrXII	102371	.	G	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=20.34;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1294,135,0
chrXII	102471	.	T	G	1717	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.89;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1750,189,0
chrXII	102959	.	T	C	1279	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7601;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.27;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1312,138,0
chrXII	103352	.	C	T	1960	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=45.58;MQ0=0;QD=22.53;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1993,216,0
chrXII	103496	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=-1.683;QD=21.19;ReadPosRankSum=1.683;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1559,165,0
chrXII	103524	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=23.14;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1491,150,0
chrXII	103548	.	T	C	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=4.014;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=0.907;QD=20.98;ReadPosRankSum=1.677;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1355,141,0
chrXII	103584	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=18.25;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1073,117,0
chrXII	103625	.	G	A	113.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DP=109;Dels=0.00;FS=1.665;HaplotypeScore=4.7988;MLEAC=1;MLEAF=0.500;MQ=37.93;MQ0=0;MQRankSum=-2.108;QD=1.04;ReadPosRankSum=-3.139;SB=-1.740e+02	GT:AD:DP:GQ:PL	0/1:70,39:109:99:143,0,798
chrXII	103627	.	G	A	144.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.821;DP=109;Dels=0.00;FS=0.783;HaplotypeScore=6.3762;MLEAC=1;MLEAF=0.500;MQ=37.25;MQ0=0;MQRankSum=-2.377;QD=1.32;ReadPosRankSum=-2.293;SB=-3.180e+02	GT:AD:DP:GQ:PL	0/1:71,38:109:99:174,0,760
chrXII	103640	.	G	A	305.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.647;DP=114;Dels=0.00;FS=0.744;HaplotypeScore=27.6665;MLEAC=1;MLEAF=0.500;MQ=34.21;MQ0=0;MQRankSum=-3.111;QD=2.68;ReadPosRankSum=-0.853;SB=-3.520e+02	GT:AD:DP:GQ:PL	0/1:70,44:114:99:335,0,689
chrXII	103648	.	G	A	347.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.464;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=48.2890;MLEAC=1;MLEAF=0.500;MQ=32.20;MQ0=0;MQRankSum=-0.016;QD=3.24;ReadPosRankSum=0.912;SB=-3.390e+02	GT:AD:DP:GQ:PL	0/1:64,43:107:99:377,0,627
chrXII	103650	.	C	A	432.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.857;DP=111;Dels=0.00;FS=8.564;HaplotypeScore=47.4811;MLEAC=1;MLEAF=0.500;MQ=32.09;MQ0=0;MQRankSum=-1.235;QD=3.89;ReadPosRankSum=-1.267;SB=-1.280e+02	GT:AD:DP:GQ:PL	0/1:74,37:111:99:462,0,525
chrXII	103655	.	A	G	521.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.776;DP=124;Dels=0.00;FS=11.384;HaplotypeScore=24.6258;MLEAC=1;MLEAF=0.500;MQ=32.47;MQ0=0;MQRankSum=-0.890;QD=4.20;ReadPosRankSum=-2.519;SB=-1.480e+02	GT:AD:DP:GQ:PL	0/1:81,43:124:99:551,0,608
chrXII	103660	.	A	C	538.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;DP=129;Dels=0.00;FS=21.977;HaplotypeScore=1.9916;MLEAC=1;MLEAF=0.500;MQ=32.68;MQ0=0;MQRankSum=-0.191;QD=4.17;ReadPosRankSum=-2.467;SB=-1.080e+02	GT:AD:DP:GQ:PL	0/1:85,44:129:99:568,0,623
chrXII	103664	.	T	C	475.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;DP=131;Dels=0.00;FS=28.585;HaplotypeScore=1.9916;MLEAC=1;MLEAF=0.500;MQ=32.94;MQ0=0;MQRankSum=-0.953;QD=3.63;ReadPosRankSum=-2.586;SB=-3.501e+01	GT:AD:DP:GQ:PL	0/1:88,43:131:99:505,0,664
chrXII	103670	.	C	T	704.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.235;DP=136;Dels=0.00;FS=29.755;HaplotypeScore=33.6115;MLEAC=1;MLEAF=0.500;MQ=33.12;MQ0=0;MQRankSum=0.667;QD=5.18;ReadPosRankSum=3.226;SB=-8.960e+02	GT:AD:DP:GQ:PL	0/1:48,88:136:99:734,0,527
chrXII	103677	.	C	G	552.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;DP=138;Dels=0.00;FS=3.415;HaplotypeScore=66.4862;MLEAC=1;MLEAF=0.500;MQ=33.66;MQ0=0;MQRankSum=1.531;QD=4.00;ReadPosRankSum=1.870;SB=-4.460e+02	GT:AD:DP:GQ:PL	0/1:78,60:138:99:582,0,780
chrXII	103682	.	C	T	373.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.993;DP=144;Dels=0.00;FS=39.942;HaplotypeScore=144.9554;MLEAC=1;MLEAF=0.500;MQ=34.49;MQ0=0;MQRankSum=-1.757;QD=2.59;ReadPosRankSum=0.314;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:103,41:144:99:403,0,968
chrXII	103687	.	C	A	99.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.997;DP=142;Dels=0.00;FS=22.267;HaplotypeScore=177.2274;MLEAC=1;MLEAF=0.500;MQ=34.28;MQ0=0;MQRankSum=-1.772;QD=0.70;ReadPosRankSum=-1.279;SB=-2.580e+02	GT:AD:DP:GQ:PL	0/1:104,38:142:99:129,0,1261
chrXII	103690	.	G	A	66.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.798;DP=146;Dels=0.00;FS=19.398;HaplotypeScore=151.6609;MLEAC=1;MLEAF=0.500;MQ=35.50;MQ0=0;MQRankSum=-0.569;QD=0.45;ReadPosRankSum=-0.743;SB=-2.820e+02	GT:AD:DP:GQ:PL	0/1:108,38:146:96:96,0,1408
chrXII	103691	.	A	G	63.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.302;DP=148;Dels=0.00;FS=18.742;HaplotypeScore=152.6078;MLEAC=1;MLEAF=0.500;MQ=35.69;MQ0=0;MQRankSum=0.059;QD=0.43;ReadPosRankSum=-0.924;SB=-2.510e+02	GT:AD:DP:GQ:PL	0/1:109,39:148:93:93,0,1449
chrXII	103694	.	G	A	742.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=161;Dels=0.00;FS=3.030;HaplotypeScore=162.1771;MLEAC=1;MLEAF=0.500;MQ=36.62;MQ0=0;MQRankSum=1.112;QD=4.61;ReadPosRankSum=-0.224;SB=-5.190e+02	GT:AD:DP:GQ:PL	0/1:89,70:161:99:772,0,784
chrXII	103697	.	T	C	403.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=160;Dels=0.00;FS=63.642;HaplotypeScore=148.3582;MLEAC=1;MLEAF=0.500;MQ=36.90;MQ0=0;MQRankSum=-3.911;QD=2.52;ReadPosRankSum=3.207;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:117,43:160:99:433,0,1070
chrXII	103700	.	A	G	2051	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=154.1920;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;MQRankSum=-0.592;QD=13.15;ReadPosRankSum=1.710;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:1,154:156:99:2084,225,0
chrXII	103706	.	G	A	201.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.306;DP=151;Dels=0.00;FS=50.954;HaplotypeScore=25.0578;MLEAC=1;MLEAF=0.500;MQ=39.97;MQ0=0;MQRankSum=-3.111;QD=1.33;ReadPosRankSum=4.632;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:122,29:151:99:231,0,1288
chrXII	103707	.	A	G	264.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DP=152;Dels=0.00;FS=69.771;HaplotypeScore=25.8465;MLEAC=1;MLEAF=0.500;MQ=40.13;MQ0=0;MQRankSum=-3.350;QD=1.74;ReadPosRankSum=3.763;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:111,40:152:99:294,0,1330
chrXII	103713	.	G	A	233.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.388;DP=137;Dels=0.00;FS=77.488;HaplotypeScore=39.5077;MLEAC=1;MLEAF=0.500;MQ=42.18;MQ0=0;MQRankSum=-4.287;QD=1.70;ReadPosRankSum=2.651;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:97,39:137:99:263,0,1301
chrXII	103723	.	T	C	151.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DP=115;Dels=0.00;FS=45.872;HaplotypeScore=28.0128;MLEAC=1;MLEAF=0.500;MQ=45.60;MQ0=0;MQRankSum=-4.765;QD=1.31;ReadPosRankSum=0.199;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,34:115:99:181,0,1252
chrXII	103729	.	G	A	61.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.988;DP=115;Dels=0.00;FS=34.987;HaplotypeScore=28.1207;MLEAC=1;MLEAF=0.500;MQ=45.86;MQ0=0;MQRankSum=-3.513;QD=0.53;ReadPosRankSum=-1.353;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:95,19:115:91:91,0,1429
chrXII	103737	.	G	T	130.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.523;DP=113;Dels=0.00;FS=42.747;HaplotypeScore=17.5448;MLEAC=1;MLEAF=0.500;MQ=46.36;MQ0=0;MQRankSum=-6.291;QD=1.15;ReadPosRankSum=-1.005;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:83,30:113:99:160,0,1353
chrXII	103778	.	T	C	72.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;DP=72;Dels=0.00;FS=5.506;HaplotypeScore=13.3684;MLEAC=1;MLEAF=0.500;MQ=49.89;MQ0=0;MQRankSum=0.356;QD=1.00;ReadPosRankSum=-0.262;SB=-5.401e+01	GT:AD:DP:GQ:PL	0/1:50,19:72:99:102,0,803
chrXII	103806	.	A	G	840	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=22.70;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:93:873,93,0
chrXII	103852	.	C	T	988	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=26.00;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1021,108,0
chrXII	104112	.	T	C	1426	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=25.46;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1459,156,0
chrXII	104406	.	T	G	1248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=3.084;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.508;QD=22.29;ReadPosRankSum=2.362;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1281,135,0
chrXII	104454	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.49;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1630,174,0
chrXII	104468	.	A	T	1691	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.25;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1724,180,0
chrXII	105266	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=16.64;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1198,129,0
chrXII	105323	.	T	C	2130	filter	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.68;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2163,231,0
chrXII	106136	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.752;QD=20.72;ReadPosRankSum=1.667;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:99:1152,126,0
chrXII	106190	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.284;QD=22.12;ReadPosRankSum=1.681;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1515,162,0
chrXII	106406	.	G	A	881	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.98;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:914,96,0
chrXII	106427	.	G	A	870	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=18.12;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:93:903,93,0
chrXII	106537	.	C	T	782	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=15.33;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:815,87,0
chrXII	106755	.	C	A	832	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.29;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:90:865,90,0
chrXII	106804	.	G	A	921	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=18.80;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:954,96,0
chrXII	106805	.	G	A	903	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=18.06;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:96:936,96,0
chrXII	106808	.	A	G	826	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.144;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;MQRankSum=0.033;QD=15.58;ReadPosRankSum=-0.163;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:69:859,69,0
chrXII	107151	.	G	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4638;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.35;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1600,174,0
chrXII	107406	.	G	A	1981	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.77;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2014,207,0
chrXII	108039	.	T	C	799	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.811;DP=61;Dels=0.00;FS=2.306;HaplotypeScore=45.5123;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;MQRankSum=-0.121;QD=13.10;ReadPosRankSum=2.847;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:3,57:61:72:832,72,0
chrXII	108393	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.84;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1175,126,0
chrXII	108621	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=71;Dels=0.00;FS=3.337;HaplotypeScore=8.2701;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.531;QD=20.15;ReadPosRankSum=0.226;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1464,156,0
chrXII	108643	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.74;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1600,171,0
chrXII	109072	.	A	T	1140	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=61;Dels=0.00;FS=2.120;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.377;QD=18.69;ReadPosRankSum=1.915;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:4,57:61:99:1173,123,0
chrXII	109142	.	T	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=22.36;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1710,177,0
chrXII	109189	.	A	G	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.544;DP=63;Dels=0.00;FS=4.721;HaplotypeScore=49.6844;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;MQRankSum=4.507;QD=0.22;ReadPosRankSum=-1.146;SB=-2.176e+01	GT:AD:DP:GQ:PL	1/1:51,12:63:6:45,6,0
chrXII	109209	.	G	C	778	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=13.19;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:87:811,87,0
chrXII	109244	.	A	G	436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=47;Dels=0.00;FS=15.519;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;MQRankSum=-2.024;QD=9.28;ReadPosRankSum=2.851;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:3,44:47:51:469,51,0
chrXII	109261	.	G	A	477	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=52.1914;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=12.89;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:54:510,54,0
chrXII	109262	.	C	T	482	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=78.2872;MLEAC=2;MLEAF=1.00;MQ=40.57;MQ0=0;QD=13.03;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:54:515,54,0
chrXII	109400	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;MQRankSum=0.071;QD=16.62;ReadPosRankSum=1.685;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1246,135,0
chrXII	109403	.	A	C	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.537;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;MQRankSum=-1.089;QD=17.74;ReadPosRankSum=1.683;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1275,138,0
chrXII	109427	.	A	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=14.89;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1269,138,0
chrXII	109450	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=14.79;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1216,129,0
chrXII	109499	.	C	T	2121	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=21.87;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2154,228,0
chrXII	109572	.	G	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=21.89;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1565,168,0
chrXII	109604	.	A	G	1081	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=22.52;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1114,117,0
chrXII	109627	.	A	G	924	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=22.00;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:957,105,0
chrXII	109643	.	T	C	799	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=21.59;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:832,90,0
chrXII	109707	.	T	A	970	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.64;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1003,105,0
chrXII	109729	.	A	C	1513	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.01;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1546,162,0
chrXII	109856	.	T	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.96;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1570,162,0
chrXII	109857	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.74;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1553,165,0
chrXII	109886	.	G	A	1823	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.48;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1856,198,0
chrXII	110793	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.1744;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.04;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1636,174,0
chrXII	110807	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.83;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1464,159,0
chrXII	110958	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1272,132,0
chrXII	111174	.	A	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.79;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1592,168,0
chrXII	111246	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.39;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1552,162,0
chrXII	111327	.	A	G	1061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.485;QD=18.95;ReadPosRankSum=1.670;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1094,114,0
chrXII	112113	.	G	A	2659	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.62;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2692,279,0
chrXII	112232	.	G	T	2461	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.17;SB=-1.451e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2494,273,0
chrXII	112278	.	G	A	1994	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.7417;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.56;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2027,210,0
chrXII	112426	.	G	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.00;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1473,165,0
chrXII	113054	.	G	A	2103	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.1770;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.37;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2136,222,0
chrXII	113145	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1790,192,0
chrXII	113758	.	T	C	2153	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.253;QD=22.90;ReadPosRankSum=1.695;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2186,231,0
chrXII	113892	.	A	G	1846	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=23.07;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1879,198,0
chrXII	113903	.	G	A	1672	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=20.14;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1705,183,0
chrXII	113920	.	T	C	1342	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=18.14;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1375,147,0
chrXII	114242	.	T	C	2395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=2.007;QD=23.48;ReadPosRankSum=2.401;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:2,98:102:99:2428,255,0
chrXII	114436	.	C	T	1607	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=24.35;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1640,171,0
chrXII	114529	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.11;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1511,159,0
chrXII	114559	.	C	T	1712	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.47;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1745,192,0
chrXII	114614	.	C	T	2597	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=42.97;MQ0=0;QD=17.79;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,146:146:99:2630,270,0
chrXII	114628	.	G	A	2427	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=16.51;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,147:147:99:2460,264,0
chrXII	114649	.	T	C	1932	SnpCluster	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;QD=15.09;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:1965,213,0
chrXII	114650	.	C	T	1971	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=4.638;HaplotypeScore=2.6979;MLEAC=2;MLEAF=1.00;MQ=40.16;MQ0=0;MQRankSum=-0.027;QD=15.40;ReadPosRankSum=-0.487;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:1,127:128:99:2004,216,0
chrXII	114659	.	G	A	2198	SnpCluster	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.0722;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=16.28;SB=-1.337e+03	GT:AD:DP:GQ:PL	1/1:0,129:135:99:2231,237,0
chrXII	114724	.	T	C	1916	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=20.17;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1949,207,0
chrXII	114772	.	C	T	1521	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.55;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1554,165,0
chrXII	114794	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.37;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1398,144,0
chrXII	114858	.	T	C	909	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.18;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:942,99,0
chrXII	114883	.	G	C	933	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.85;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:966,105,0
chrXII	114974	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=22.29;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1749,189,0
chrXII	114988	.	A	G	1460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=72;Dels=0.00;FS=9.985;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;MQRankSum=-1.184;QD=20.28;ReadPosRankSum=2.790;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:3,69:72:99:1493,162,0
chrXII	115039	.	C	G	995	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=18.43;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1028,108,0
chrXII	115054	.	T	C	768	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=14.22;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:84:801,84,0
chrXII	115108	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=5.956;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;MQRankSum=0.440;QD=15.48;ReadPosRankSum=1.525;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1070,111,0
chrXII	115234	.	T	C	919	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.42;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:952,102,0
chrXII	115378	.	C	T	1925	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.39;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1958,207,0
chrXII	115422	.	C	G	1882	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=25.43;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1915,204,0
chrXII	116274	.	C	T	955	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.70;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:988,105,0
chrXII	116312	.	C	T	867	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=16.06;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:900,96,0
chrXII	116314	.	A	G	845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=54;Dels=0.00;FS=3.080;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-1.050;QD=15.65;ReadPosRankSum=2.357;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:2,51:54:93:878,93,0
chrXII	116396	.	A	G	2247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=116;Dels=0.00;FS=3.001;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;MQRankSum=-0.414;QD=19.37;ReadPosRankSum=2.407;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:2,114:116:99:2280,240,0
chrXII	116401	.	A	T	2328	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.40;SB=-1.540e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2361,243,0
chrXII	116674	.	C	T	1386	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=20.09;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1419,153,0
chrXII	116989	.	T	C	1146	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.84;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1179,126,0
chrXII	117000	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.48;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1193,129,0
chrXII	117391	.	G	C	1260	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.66;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1293,138,0
chrXII	117547	.	A	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1304,141,0
chrXII	117707	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=3.701;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=1.579;QD=21.35;ReadPosRankSum=1.681;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1485,159,0
chrXII	117883	.	T	C	2231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-0.192;QD=22.54;ReadPosRankSum=1.697;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2264,243,0
chrXII	118317	.	T	C	3095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;MQRankSum=1.968;QD=20.63;ReadPosRankSum=2.416;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:2,146:150:99:3128,336,0
chrXII	118322	.	A	G	3100	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.23;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3133,333,0
chrXII	118328	.	A	G	2948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=146;Dels=0.00;FS=5.733;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-0.427;QD=20.19;ReadPosRankSum=1.637;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:1,145:146:99:2981,318,0
chrXII	118334	.	T	C	2914	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=20.52;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2947,315,0
chrXII	118381	.	T	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=18.69;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1958,207,0
chrXII	118564	.	C	G	2596	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.28;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2629,285,0
chrXII	118640	.	G	A	3107	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.85;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,134:136:99:3140,327,0
chrXII	119129	.	C	T	2257	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2572;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.01;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2290,234,0
chrXII	119291	.	A	G	1575	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.72;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1608,171,0
chrXII	119330	.	A	G	1786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=12.6540;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.136;QD=19.84;ReadPosRankSum=2.395;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1819,195,0
chrXII	119558	.	C	T	2205	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8145;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.78;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2238,228,0
chrXII	119638	.	C	T	2167	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.30;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2200,231,0
chrXII	119917	.	T	C	2875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;DP=126;Dels=0.00;FS=5.508;HaplotypeScore=5.8879;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=1.696;QD=22.82;ReadPosRankSum=2.592;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:3,123:126:99:2908,312,0
chrXII	120183	.	G	A	2770	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.37;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2803,291,0
chrXII	120216	.	C	T	2212	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.87;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2245,231,0
chrXII	120282	.	A	T	2057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-0.443;QD=23.64;ReadPosRankSum=1.692;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2090,216,0
chrXII	120355	.	C	G	2288	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.88;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2321,246,0
chrXII	120412	.	G	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.63;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2030,207,0
chrXII	120445	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=23.14;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1722,186,0
chrXII	120512	.	A	G	1148	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=16.88;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1181,126,0
chrXII	120526	.	T	C	990	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=69;Dels=0.00;FS=11.108;HaplotypeScore=2.9571;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=0.397;QD=14.35;ReadPosRankSum=2.898;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1023,114,0
chrXII	120550	.	C	T	1076	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.06;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1109,114,0
chrXII	120592	.	A	G	1577	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=20.48;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1610,171,0
chrXII	120634	.	T	C	1436	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.51;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1469,156,0
chrXII	120649	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.87;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1389,147,0
chrXII	120716	.	C	T	1623	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=20.81;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1656,171,0
chrXII	120730	.	T	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.91;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1640,177,0
chrXII	120808	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=25.14;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2120,213,0
chrXII	120821	.	C	T	2007	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.61;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2040,213,0
chrXII	120997	.	G	A	1665	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.91;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1698,180,0
chrXII	121116	.	A	T	2811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.441;QD=25.32;ReadPosRankSum=1.701;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2844,288,0
chrXII	121193	.	A	C	1597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.599;DP=86;Dels=0.00;FS=4.303;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=1.993;QD=18.57;ReadPosRankSum=3.027;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:5,81:86:99:1630,177,0
chrXII	121197	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.05;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=17.39;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1476,162,0
chrXII	121206	.	T	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=20.65;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1664,177,0
chrXII	121223	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=18.72;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1362,141,0
chrXII	121294	.	C	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.72;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2120,228,0
chrXII	121492	.	C	T	1436	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.18;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1469,156,0
chrXII	121537	.	A	G	1807	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=22.87;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1840,195,0
chrXII	121567	.	T	A	1880	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=23.21;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1913,192,0
chrXII	121811	.	T	G	1522	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-1.462;QD=23.78;ReadPosRankSum=1.678;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1555,162,0
chrXII	121819	.	T	C	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;MQRankSum=0.346;QD=21.54;ReadPosRankSum=1.626;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1433,153,0
chrXII	122098	.	A	G	1521	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.42;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1554,165,0
chrXII	122138	.	T	C	1786	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=18.80;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1819,192,0
chrXII	122140	.	G	A	1819	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.56;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1852,189,0
chrXII	122340	.	A	G	1995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.829;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.227;QD=19.95;ReadPosRankSum=1.697;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2028,219,0
chrXII	122353	.	T	C	1769	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.88;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1802,192,0
chrXII	122930	.	A	G	2553	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.00;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2586,273,0
chrXII	124013	.	A	G	1060	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1093,120,0
chrXII	124218	.	G	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.47;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1493,159,0
chrXII	124421	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.14;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1362,147,0
chrXII	124642	.	G	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.95;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1092,111,0
chrXII	125128	.	C	T	702	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=16.71;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:75:735,75,0
chrXII	125849	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=4.091;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.969;QD=22.45;ReadPosRankSum=1.674;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1380,144,0
chrXII	126014	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.22;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1024,111,0
chrXII	126203	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.502;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.804;QD=20.11;ReadPosRankSum=1.670;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1159,126,0
chrXII	126664	.	A	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.1228;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.40;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1527,165,0
chrXII	126691	.	C	T	1498	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.36;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1531,159,0
chrXII	126722	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.44;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1577,168,0
chrXII	126934	.	C	T	2074	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.60;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2107,231,0
chrXII	127006	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7624;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.33;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1850,201,0
chrXII	127161	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.713;QD=21.33;ReadPosRankSum=1.664;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1121,120,0
chrXII	127219	.	G	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.28;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1363,144,0
chrXII	127234	.	A	G	1474	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=-1.732;QD=18.90;ReadPosRankSum=1.643;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1507,162,0
chrXII	127478	.	C	T	1079	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=16.86;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1112,114,0
chrXII	127487	.	T	C	1079	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=17.40;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1112,117,0
chrXII	127499	.	G	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.76;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1065,117,0
chrXII	127531	.	T	C	988	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.37;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1021,111,0
chrXII	127616	.	T	C	1802	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.03;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1835,198,0
chrXII	128225	.	T	C	1714	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.16;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1747,186,0
chrXII	128653	.	T	C	2511	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.04;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2544,273,0
chrXII	129024	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=0.020;QD=18.94;ReadPosRankSum=1.613;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1681,183,0
chrXII	129090	.	C	T	2189	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=23.54;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2222,228,0
chrXII	129489	.	A	G	719	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=17.54;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:78:752,78,0
chrXII	129657	.	C	A	1407	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.32;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1440,150,0
chrXII	129660	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.84;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1295,144,0
chrXII	129681	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.24;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1245,132,0
chrXII	129764	.	A	G	1890	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.24;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1923,204,0
chrXII	130209	.	A	G	1683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.3554;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=0.151;QD=16.18;ReadPosRankSum=1.698;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:1,102:104:99:1716,180,0
chrXII	130212	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.7781;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.35;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1668,183,0
chrXII	130659	.	A	G	1824	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=23.09;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1857,198,0
chrXII	130729	.	C	T	1630	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=20.90;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1663,177,0
chrXII	130739	.	G	A	1708	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.77;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1741,177,0
chrXII	130846	.	T	A	1622	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.78;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1655,177,0
chrXII	130879	.	T	A	1261	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;MQRankSum=-0.247;QD=16.38;ReadPosRankSum=1.687;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1294,141,0
chrXII	130917	.	C	G	524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=71;Dels=0.00;FS=3.136;HaplotypeScore=5.4859;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;MQRankSum=-0.792;QD=7.38;ReadPosRankSum=1.683;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:63:557,63,0
chrXII	132187	.	C	T	1910	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.87;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1943,204,0
chrXII	132253	.	G	A	678	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.056;DP=83;Dels=0.00;FS=6.073;HaplotypeScore=54.9141;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=-1.745;QD=8.17;ReadPosRankSum=-5.380;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:27,56:83:75:711,75,0
chrXII	132256	.	G	A	388.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=54.9141;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=0;MQRankSum=-0.300;QD=4.91;ReadPosRankSum=-3.250;SB=-2.280e+02	GT:AD:DP:GQ:PL	0/1:50,29:79:99:418,0,478
chrXII	132260	.	A	G	1005	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=51.3843;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-0.641;QD=13.58;ReadPosRankSum=1.685;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1038,114,0
chrXII	132973	.	T	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=19.94;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1269,135,0
chrXII	132982	.	A	G	1267	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3826;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.80;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1300,141,0
chrXII	133132	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.3332;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.36;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1458,156,0
chrXII	133477	.	C	T	1290	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.15;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1323,135,0
chrXII	134294	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1504,159,0
chrXII	134767	.	A	G	2412	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.97;SB=-1.386e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2445,261,0
chrXII	134875	.	G	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3634;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=20.67;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1604,171,0
chrXII	135031	.	G	A	1971	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7087;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.90;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2004,219,0
chrXII	135067	.	T	G	2263	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.63;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2296,243,0
chrXII	135514	.	G	A	2097	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.79;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2130,225,0
chrXII	136079	.	G	A	1837	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.36;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1870,192,0
chrXII	136300	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=3.395;HaplotypeScore=7.0067;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=-1.439;QD=18.50;ReadPosRankSum=1.674;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1143,123,0
chrXII	136527	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.617;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.477;QD=20.30;ReadPosRankSum=1.582;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1434,150,0
chrXII	137158	.	C	T	1467	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.45;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1500,156,0
chrXII	137371	.	A	G	1756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.732;QD=20.90;ReadPosRankSum=1.690;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1789,189,0
chrXII	137431	.	A	G	2028	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=87;Dels=0.00;FS=3.904;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.363;QD=23.31;ReadPosRankSum=0.040;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:2061,219,0
chrXII	137707	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.74;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1238,132,0
chrXII	138124	.	G	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=23.12;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1374,144,0
chrXII	138127	.	T	A	1386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7089;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;MQRankSum=0.735;QD=20.69;ReadPosRankSum=1.680;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1419,147,0
chrXII	138597	.	A	G	1691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=0.512;QD=23.82;ReadPosRankSum=1.683;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1724,180,0
chrXII	138657	.	A	G	1935	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5712;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.46;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1968,207,0
chrXII	138678	.	T	C	2065	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.1872;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.74;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2098,219,0
chrXII	138768	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.777;QD=20.07;ReadPosRankSum=2.801;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:3,83:86:99:1759,186,0
chrXII	139014	.	T	C	1835	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.34;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1868,207,0
chrXII	139257	.	T	C	1790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.178;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=-0.811;QD=22.66;ReadPosRankSum=1.688;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1823,198,0
chrXII	139269	.	G	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.84;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1792,186,0
chrXII	139321	.	A	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.93;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1378,144,0
chrXII	139322	.	A	T	1290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.713;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.047;QD=17.43;ReadPosRankSum=1.592;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1323,144,0
chrXII	139668	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=4.523;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.121;QD=24.90;ReadPosRankSum=1.664;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1328,141,0
chrXII	139713	.	C	T	1695	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=26.08;SB=-1.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1728,183,0
chrXII	140216	.	G	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.98;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1330,135,0
chrXII	140584	.	T	C	904	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.18;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:99:937,102,0
chrXII	140635	.	A	T	1128	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.89;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1161,126,0
chrXII	140797	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.3462;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.22;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1544,171,0
chrXII	140874	.	C	T	2217	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.91;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2250,237,0
chrXII	141078	.	C	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.97;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1851,192,0
chrXII	141192	.	C	T	2469	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.7819;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.24;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2502,258,0
chrXII	141291	.	T	C	2339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=110;Dels=0.00;FS=6.473;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.327;QD=21.26;ReadPosRankSum=2.314;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:2,107:110:99:2372,252,0
chrXII	141390	.	C	T	2688	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.40;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2721,279,0
chrXII	141933	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.79;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1529,159,0
chrXII	142077	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.218;DP=98;Dels=0.00;FS=9.205;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.018;QD=17.71;ReadPosRankSum=3.273;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:4,92:98:99:1769,189,0
chrXII	142324	.	A	C	1635	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.23;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1668,180,0
chrXII	142851	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=10.9104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1307,141,0
chrXII	142933	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.45;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2006,216,0
chrXII	142998	.	G	A	4063.01	PASS	AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.72;SB=-2.416e+03	GT:AD:DP:GQ:PL	1/1:0,206:206:99:4063,441,0
chrXII	143009	.	C	G	4519.01	PASS	AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=21.42;SB=-2.695e+03	GT:AD:DP:GQ:PL	1/1:0,207:211:99:4519,495,0
chrXII	143093	.	G	A	2622	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.06;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2655,279,0
chrXII	143135	.	G	A	2173	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.98;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2206,228,0
chrXII	143164	.	C	A	1866	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.56;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1899,195,0
chrXII	143452	.	T	C	1715	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.50;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1748,183,0
chrXII	143974	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.30;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1734,186,0
chrXII	144049	.	G	A	1596	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.86;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1629,171,0
chrXII	144379	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.43;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1439,150,0
chrXII	144700	.	A	G	1784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=4.037;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.547;QD=23.47;ReadPosRankSum=1.641;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1817,195,0
chrXII	144822	.	G	A	1609	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.32;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1642,168,0
chrXII	145042	.	G	T	2508	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=24.83;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2541,270,0
chrXII	145067	.	G	A	2278	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.01;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2311,240,0
chrXII	145123	.	G	C	1764	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.62;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1797,189,0
chrXII	145416	.	G	A	2315	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=12.8820;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.44;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2348,246,0
chrXII	145780	.	C	T	1996	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.5962;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.46;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2029,219,0
chrXII	145897	.	C	T	1251	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.20;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1284,138,0
chrXII	146081	.	T	C	3066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=151;Dels=0.00;FS=2.889;HaplotypeScore=7.0911;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=0.057;QD=20.30;ReadPosRankSum=2.368;SB=-1.648e+03	GT:AD:DP:GQ:PL	1/1:2,149:151:99:3099,330,0
chrXII	146088	.	C	T	2914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.025;DP=147;Dels=0.00;FS=3.611;HaplotypeScore=4.5976;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=1.143;QD=19.82;ReadPosRankSum=1.544;SB=-1.770e+03	GT:AD:DP:GQ:PL	1/1:1,146:147:99:2947,303,0
chrXII	146111	.	C	A	2973	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.22;SB=-1.731e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3006,309,0
chrXII	146347	.	C	T	1982	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.17;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2015,213,0
chrXII	146506	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.89;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1456,150,0
chrXII	146588	.	G	A	1780	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.45;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1813,189,0
chrXII	146773	.	C	G	887	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.12;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:99:920,99,0
chrXII	146893	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=53;Dels=0.00;FS=3.458;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.442;QD=22.38;ReadPosRankSum=1.597;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1219,126,0
chrXII	147475	.	T	C	1691	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.68;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1724,180,0
chrXII	148252	.	A	G	1466	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.03;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1499,165,0
chrXII	149035	.	T	C	2390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=109;Dels=0.00;FS=2.944;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.282;QD=21.93;ReadPosRankSum=2.382;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:2,107:109:99:2423,258,0
chrXII	149617	.	C	A	1695	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.19;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1728,186,0
chrXII	149893	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6998;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.51;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1744,189,0
chrXII	150249	.	A	G	2012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;MQRankSum=-0.324;QD=21.87;ReadPosRankSum=1.694;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:1,90:92:99:2045,216,0
chrXII	150352	.	G	A	2625	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=25.49;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2658,276,0
chrXII	150367	.	A	G	2259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=3.632;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;MQRankSum=-1.386;QD=24.82;ReadPosRankSum=1.694;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:1,89:91:99:2292,240,0
chrXII	150435	.	T	A	1169	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=23.86;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1202,123,0
chrXII	150440	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=21.55;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1175,123,0
chrXII	150496	.	C	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=17.18;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1098,111,0
chrXII	150499	.	C	T	942	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.62;MQ0=0;QD=16.24;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:975,108,0
chrXII	150544	.	C	T	57.97	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=0;QD=3.41;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:9:90,9,0
chrXII	150645	.	A	C	837	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.35;MQ0=0;QD=22.62;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:93:870,93,0
chrXII	150660	.	A	G	872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;MQRankSum=1.126;QD=21.80;ReadPosRankSum=1.473;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:1,39:40:96:905,96,0
chrXII	150816	.	C	T	225.01	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=22.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,9:10:27:258,27,0
chrXII	150826	.	G	T	225.01	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=25.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,9:9:27:258,27,0
chrXII	150833	.	T	A	226.01	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.91;MQ0=0;QD=25.11;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,9:9:27:259,27,0
chrXII	150858	.	G	T	204.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.109;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;MQRankSum=0.185;QD=17.00;ReadPosRankSum=0.185;SB=2.99	GT:AD:DP:GQ:PL	1/1:3,9:12:27:237,27,0
chrXII	150874	.	A	C	45.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.046;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=53.4984;MLEAC=2;MLEAF=1.00;MQ=30.01;MQ0=0;MQRankSum=0.311;QD=1.00;ReadPosRankSum=2.847;SB=-4.997e+01	GT:AD:DP:GQ:PL	1/1:43,3:46:9:78,9,0
chrXII	150875	.	C	A	50.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.660;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=12.7370;MLEAC=2;MLEAF=1.00;MQ=29.83;MQ0=0;MQRankSum=-0.159;QD=1.13;ReadPosRankSum=2.844;SB=-4.797e+01	GT:AD:DP:GQ:PL	1/1:42,3:45:9:83,9,0
chrXII	150955	.	A	G	624	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.50;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:69:657,69,0
chrXII	150983	.	C	T	847	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.01;MQ0=0;QD=17.29;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,49:49:96:880,96,0
chrXII	151001	.	G	A	1010	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=19.42;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1043,105,0
chrXII	151034	.	T	A	409	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=12.03;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:45:442,45,0
chrXII	151046	.	T	A	439	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.87;MQ0=0;QD=15.68;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:48:472,48,0
chrXII	151102	.	G	A	530	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=15.14;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:60:563,60,0
chrXII	151146	.	T	C	34.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.771;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=166.2394;MLEAC=2;MLEAF=1.00;MQ=46.21;MQ0=0;MQRankSum=1.296;QD=0.71;ReadPosRankSum=-3.305;SB=-9.672e-01	GT:AD:DP:GQ:PL	1/1:45,4:49:9:67,9,0
chrXII	151170	.	G	A	834	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=11.27;SB=-6.001e+01	GT:AD:DP:GQ:PL	1/1:0,70:74:90:867,90,0
chrXII	151178	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=13.14;SB=-9.101e+01	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1005,105,0
chrXII	151249	.	C	A	2549	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=25.24;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2582,258,0
chrXII	151308	.	C	T	3468.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.92;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3468,375,0
chrXII	151453	.	G	C	2575	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;QD=24.07;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2608,276,0
chrXII	151548	.	C	A	2752	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.9037;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=23.13;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2785,294,0
chrXII	151611	.	T	C	2619	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=125;Dels=0.00;FS=10.283;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.450;QD=20.95;ReadPosRankSum=2.410;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:2,121:125:99:2652,294,0
chrXII	151726	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.17;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2150,219,0
chrXII	151811	.	C	T	1485	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.07;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1518,159,0
chrXII	152060	.	A	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=15.52;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1135,120,0
chrXII	152079	.	A	G	1022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=-1.059;QD=14.19;ReadPosRankSum=1.684;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1055,114,0
chrXII	152081	.	A	C	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-0.775;QD=14.08;ReadPosRankSum=1.595;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1103,120,0
chrXII	152313	.	A	G	1438	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1471,159,0
chrXII	152571	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.52;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1553,168,0
chrXII	152808	.	G	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1712,177,0
chrXII	153057	.	G	A	1933	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.57;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1966,204,0
chrXII	153157	.	T	C	1789	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.65;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1822,192,0
chrXII	153450	.	A	G	2344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.274;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.262;QD=23.68;ReadPosRankSum=1.662;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2377,261,0
chrXII	153780	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=4.068;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-1.685;QD=23.42;ReadPosRankSum=1.685;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,73:76:99:1813,192,0
chrXII	153897	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.77;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2120,216,0
chrXII	154310	.	T	C	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=7.328;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.780;QD=20.71;ReadPosRankSum=2.395;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1897,201,0
chrXII	154504	.	T	C	2231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=117;Dels=0.00;FS=5.422;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;MQRankSum=-1.642;QD=19.07;ReadPosRankSum=1.702;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2264,240,0
chrXII	154511	.	C	T	2304	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.03;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2337,243,0
chrXII	154678	.	C	T	1730	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.2107;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.12;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1763,189,0
chrXII	155096	.	T	A	2322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=100;Dels=0.00;FS=2.968;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.037;QD=23.22;ReadPosRankSum=2.401;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:2,98:100:99:2355,243,0
chrXII	155280	.	A	G	2076	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.57;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2109,225,0
chrXII	155963	.	C	T	1611	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.41;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1644,168,0
chrXII	156073	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.74;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1630,174,0
chrXII	156373	.	A	G	2686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;DP=124;Dels=0.00;FS=5.753;HaplotypeScore=9.0742;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.598;QD=21.66;ReadPosRankSum=2.943;SB=-1.384e+03	GT:AD:DP:GQ:PL	1/1:3,120:124:99:2719,291,0
chrXII	156509	.	C	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1367,141,0
chrXII	156825	.	G	A	1385	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.98;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1418,153,0
chrXII	156924	.	T	G	857	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.42;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:890,93,0
chrXII	157014	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.43;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1279,138,0
chrXII	157753	.	A	T	1085	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.70;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1118,114,0
chrXII	157785	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.06;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1116,117,0
chrXII	157806	.	C	T	1395	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.44;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1428,156,0
chrXII	158132	.	A	T	1732	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.74;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1765,180,0
chrXII	158461	.	A	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.90;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1413,153,0
chrXII	158537	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.68;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1303,141,0
chrXII	159242	.	A	G	2953	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=131;Dels=0.00;FS=8.010;HaplotypeScore=11.0490;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.163;QD=22.54;ReadPosRankSum=1.561;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:2,128:131:99:2986,324,0
chrXII	159272	.	A	C	2420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=102;Dels=0.00;FS=2.775;HaplotypeScore=5.7633;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=2.160;QD=23.73;ReadPosRankSum=0.374;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:2453,249,0
chrXII	159350	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.86;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1542,171,0
chrXII	159591	.	G	A	2859	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.42;SB=-1.687e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2892,300,0
chrXII	159671	.	C	G	1916	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.35;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1949,210,0
chrXII	160185	.	G	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.58;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1309,135,0
chrXII	160486	.	T	C	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2513;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.531;QD=24.35;ReadPosRankSum=1.682;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1713,183,0
chrXII	160531	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.64;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1233,129,0
chrXII	160951	.	T	C	1294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.505;QD=20.87;ReadPosRankSum=1.675;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1327,141,0
chrXII	161156	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.14;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1217,126,0
chrXII	161206	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.70;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1420,153,0
chrXII	161416	.	C	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.89;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1456,153,0
chrXII	161617	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=6.388;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.890;QD=19.20;ReadPosRankSum=1.685;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1454,156,0
chrXII	162566	.	G	A	1110	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.6147;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.56;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1143,120,0
chrXII	162762	.	C	T	1494	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.30;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1527,165,0
chrXII	162900	.	C	T	1307	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=20.42;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1340,138,0
chrXII	162922	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=19.34;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1155,117,0
chrXII	163192	.	A	G	2269	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.88;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2302,252,0
chrXII	163290	.	A	G	2345	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.77;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2378,252,0
chrXII	163451	.	A	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.83;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1401,150,0
chrXII	163609	.	A	G	1610	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.40;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1643,177,0
chrXII	163665	.	T	C	1588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=4.721;HaplotypeScore=5.0701;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.652;QD=18.05;ReadPosRankSum=1.450;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1621,158,0
chrXII	164023	.	A	T	1861	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.26;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1894,204,0
chrXII	164111	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=-0.917;QD=22.81;ReadPosRankSum=1.691;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1972,207,0
chrXII	164123	.	A	C	1888	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.21;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1921,204,0
chrXII	164197	.	A	G	1336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;MQRankSum=-0.879;QD=19.36;ReadPosRankSum=1.682;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1369,144,0
chrXII	164209	.	T	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=4.5371;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=17.80;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1368,141,0
chrXII	164240	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.222;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;MQRankSum=-0.973;QD=12.67;ReadPosRankSum=1.666;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:1,104:107:99:1389,147,0
chrXII	164242	.	T	C	1364	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=12.87;SB=-1.402e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1397,150,0
chrXII	164280	.	C	T	2188	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=16.70;SB=-1.526e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2221,228,0
chrXII	164682	.	G	A	2023	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.07;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2056,210,0
chrXII	164733	.	C	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=20.81;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1781,183,0
chrXII	164734	.	A	G	1690	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=-0.104;QD=19.65;ReadPosRankSum=1.690;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:1,82:86:99:1723,183,0
chrXII	164865	.	G	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.70;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1491,159,0
chrXII	164910	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.531;QD=18.65;ReadPosRankSum=1.632;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1320,141,0
chrXII	164928	.	A	C	1199	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.17;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1232,135,0
chrXII	164945	.	A	G	1370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=5.063;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.877;QD=17.79;ReadPosRankSum=1.417;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1403,150,0
chrXII	165084	.	A	G	2179	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.574;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-0.806;QD=24.76;ReadPosRankSum=1.692;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,85:88:99:2212,237,0
chrXII	165412	.	C	T	2083	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.04;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2116,228,0
chrXII	165625	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1400,147,0
chrXII	165796	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.308;QD=23.14;ReadPosRankSum=1.662;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1167,126,0
chrXII	165874	.	A	C	1263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.284;HaplotypeScore=7.2558;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.499;QD=21.41;ReadPosRankSum=1.674;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1296,138,0
chrXII	166160	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=9.7703;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.88;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1286,132,0
chrXII	166428	.	G	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.74;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1178,129,0
chrXII	166515	.	G	A	1851	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.04;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1884,195,0
chrXII	166641	.	G	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.41;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1344,138,0
chrXII	166935	.	A	G	2197	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=6.463;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.168;QD=23.62;ReadPosRankSum=1.658;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2230,237,0
chrXII	166947	.	A	G	2232	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=22.32;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2265,237,0
chrXII	167279	.	C	A	3188	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.25;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,149:150:99:3221,348,0
chrXII	167296	.	C	A	2566	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.20;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2599,288,0
chrXII	167521	.	A	G	2589	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.76;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2622,279,0
chrXII	167640	.	T	C	2069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.933;QD=22.74;ReadPosRankSum=1.694;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2102,222,0
chrXII	167685	.	T	C	2006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.501;QD=22.04;ReadPosRankSum=0.693;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:2039,219,0
chrXII	167737	.	A	G	1659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=4.184;HaplotypeScore=6.7526;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=-1.185;QD=21.55;ReadPosRankSum=1.687;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1692,183,0
chrXII	167782	.	G	A	2037	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.25;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2070,213,0
chrXII	168055	.	A	G	2599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=116;Dels=0.00;FS=3.043;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-2.238;QD=22.41;ReadPosRankSum=2.407;SB=-1.536e+03	GT:AD:DP:GQ:PL	1/1:2,114:116:99:2632,276,0
chrXII	168149	.	G	A	2660	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.96;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2693,273,0
chrXII	168169	.	C	T	2344	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.56;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2377,261,0
chrXII	168351	.	G	T	3797.01	PASS	AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.64;SB=-1.634e+03	GT:AD:DP:GQ:PL	1/1:0,184:184:99:3797,405,0
chrXII	168352	.	G	A	3826.01	PASS	AC=2;AF=1.00;AN=2;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=20.68;SB=-1.883e+03	GT:AD:DP:GQ:PL	1/1:0,183:185:99:3826,408,0
chrXII	169076	.	G	A	2343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.142;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=8.6698;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.258;QD=24.93;ReadPosRankSum=-1.327;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2376,222,0
chrXII	169124	.	G	T	2053	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=24.15;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:2086,213,0
chrXII	169203	.	T	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=15.62;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1267,132,0
chrXII	169210	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8459;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=16.17;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1278,132,0
chrXII	169381	.	T	C	2555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=119;Dels=0.00;FS=2.826;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.519;QD=21.47;ReadPosRankSum=2.388;SB=-1.301e+03	GT:AD:DP:GQ:PL	1/1:2,117:119:99:2588,273,0
chrXII	169633	.	C	T	2702	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.95;SB=-1.509e+03	GT:AD:DP:GQ:PL	1/1:0,125:129:99:2735,279,0
chrXII	169954	.	A	G	2187	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.0198;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.27;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2220,234,0
chrXII	169985	.	G	A	1709	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=24.77;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1742,180,0
chrXII	170119	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.26;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1636,174,0
chrXII	170342	.	C	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=16.65;SB=-1.256e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1798,186,0
chrXII	170356	.	G	T	1659	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=15.08;SB=-1.398e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1692,177,0
chrXII	170369	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=16.07;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1560,168,0
chrXII	170370	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=13.79;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1343,150,0
chrXII	170730	.	T	C	645	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=11.12;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:72:678,72,0
chrXII	170741	.	A	G	590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=48.5736;MLEAC=2;MLEAF=1.00;MQ=34.49;MQ0=0;MQRankSum=-1.064;QD=10.35;ReadPosRankSum=1.672;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:66:623,66,0
chrXII	170816	.	A	G	542	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=20.85;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:60:575,60,0
chrXII	170821	.	A	G	512	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=18.29;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:57:545,57,0
chrXII	170859	.	G	A	878	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.51;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:911,93,0
chrXII	170932	.	T	A	984	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=19.68;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1017,114,0
chrXII	170937	.	C	A	963	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=20.49;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:996,105,0
chrXII	170963	.	A	G	772	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=17.55;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:805,87,0
chrXII	171013	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=21.27;SB=-1.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1224,135,0
chrXII	171038	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=23.26;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1266,129,0
chrXII	171076	.	T	G	917	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=18.34;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:950,99,0
chrXII	171205	.	T	C	1763	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=19.37;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1796,192,0
chrXII	171251	.	C	G	2167	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=10.4741;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.36;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,113:118:99:2200,240,0
chrXII	171320	.	C	T	2540	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=24.19;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2573,261,0
chrXII	171335	.	T	C	1938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=0.866;QD=21.07;ReadPosRankSum=1.694;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1971,219,0
chrXII	171556	.	C	G	2159	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=22.49;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2192,237,0
chrXII	171620	.	G	A	1757	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.0582;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=19.10;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1790,192,0
chrXII	171872	.	A	G	453	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.70;SB=-6.586e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:51:486,51,0
chrXII	171930	.	G	A	566	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.64;SB=-6.523e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:63:599,63,0
chrXII	171935	.	A	T	806	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.24;MQ0=0;QD=23.71;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:87:839,87,0
chrXII	172080	.	G	A	1075	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=25.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1108,120,0
chrXII	172105	.	G	A	1538	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.63;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1571,162,0
chrXII	172274	.	T	G	746	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=26.64;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:81:779,81,0
chrXII	172462	.	C	T	2092	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.79;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2125,225,0
chrXII	172616	.	A	G	1540	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.06;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1573,174,0
chrXII	173531	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=4.051;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.880;QD=20.26;ReadPosRankSum=1.675;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1269,138,0
chrXII	173735	.	A	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1486,159,0
chrXII	173861	.	T	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=25.45;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1789,183,0
chrXII	173878	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=3.438;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.595;QD=19.88;ReadPosRankSum=1.678;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1325,141,0
chrXII	173892	.	A	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.33;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1395,144,0
chrXII	173985	.	C	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.71;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1249,132,0
chrXII	174521	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.11;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1722,180,0
chrXII	174526	.	T	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=19.35;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1658,171,0
chrXII	174624	.	C	T	2306	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=12.5529;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.06;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2339,246,0
chrXII	174938	.	A	C	2107	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.95;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2140,225,0
chrXII	175138	.	G	A	1749	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.4903;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=18.41;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1782,198,0
chrXII	175158	.	G	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=14.56;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1314,144,0
chrXII	175160	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.730;DP=87;Dels=0.00;FS=21.922;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;MQRankSum=-2.781;QD=14.91;ReadPosRankSum=3.730;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:5,82:87:99:1330,141,0
chrXII	175187	.	G	A	1081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.5159;MLEAC=2;MLEAF=1.00;MQ=39.03;MQ0=0;MQRankSum=-0.720;QD=12.15;ReadPosRankSum=-0.525;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1114,114,0
chrXII	175203	.	G	A	840	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.38;MQ0=0;QD=8.94;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:90:873,90,0
chrXII	175207	.	A	G	778	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=95;Dels=0.00;FS=6.261;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.73;MQ0=0;MQRankSum=1.509;QD=8.19;ReadPosRankSum=1.695;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:1,92:95:84:811,84,0
chrXII	175217	.	T	C	928	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=9.47;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:961,102,0
chrXII	175359	.	C	G	2118	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0332;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.18;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2151,234,0
chrXII	175382	.	C	A	1962	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.33;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1995,210,0
chrXII	175770	.	C	T	1301	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6555;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.71;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1334,141,0
chrXII	175835	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.21;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1399,150,0
chrXII	176348	.	G	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.58;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1901,201,0
chrXII	176423	.	T	C	1810	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.35;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1843,201,0
chrXII	176833	.	T	G	2955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=122;Dels=0.00;FS=2.685;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.151;QD=24.22;ReadPosRankSum=0.998;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:2,120:122:99:2988,315,0
chrXII	177754	.	G	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.34;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1356,147,0
chrXII	177778	.	C	T	1525	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.11;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1558,168,0
chrXII	178195	.	T	C	2153	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.47;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2186,234,0
chrXII	178246	.	G	C	2228	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.22;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2261,234,0
chrXII	178408	.	A	G	1701	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.74;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1734,189,0
chrXII	178531	.	T	A	1822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=5.071;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.501;QD=20.02;ReadPosRankSum=1.578;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1855,192,0
chrXII	178573	.	C	T	2883	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.02;SB=-1.226e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:2916,315,0
chrXII	178944	.	C	T	2448	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.43;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2481,255,0
chrXII	178986	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.7846;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=0.247;QD=18.35;ReadPosRankSum=1.701;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2106,225,0
chrXII	179029	.	A	G	2336	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.25;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2369,249,0
chrXII	179034	.	A	G	2194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=0.624;QD=21.94;ReadPosRankSum=1.663;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2227,237,0
chrXII	179121	.	G	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=16.68;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1551,159,0
chrXII	179135	.	A	G	1424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=-0.224;QD=16.75;ReadPosRankSum=1.691;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1457,153,0
chrXII	179136	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=46.06;MQ0=0;MQRankSum=-1.628;QD=16.51;ReadPosRankSum=2.391;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1420,153,0
chrXII	179159	.	A	G	1250	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=16.89;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1283,135,0
chrXII	179190	.	C	T	1292	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=20.19;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1325,138,0
chrXII	179276	.	A	C	2058	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=3.727;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.205;QD=22.37;ReadPosRankSum=1.694;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2091,222,0
chrXII	179683	.	T	C	3104	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.33;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,138:139:99:3137,333,0
chrXII	179807	.	T	A	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=2.967;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=0.156;QD=17.35;ReadPosRankSum=2.381;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1265,129,0
chrXII	179815	.	T	A	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=75;Dels=0.00;FS=2.894;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=-1.431;QD=16.95;ReadPosRankSum=2.384;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1304,135,0
chrXII	179828	.	G	T	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=4.771;HaplotypeScore=5.8866;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.879;QD=19.65;ReadPosRankSum=1.531;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1389,144,0
chrXII	179876	.	A	T	808	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=17.96;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:84:841,84,0
chrXII	179880	.	T	A	702	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=15.60;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:735,81,0
chrXII	179902	.	T	C	793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.654;QD=17.62;ReadPosRankSum=1.655;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:90:826,90,0
chrXII	180683	.	T	C	1683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.173;QD=21.04;ReadPosRankSum=1.689;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1716,186,0
chrXII	180796	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1047;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=17.44;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1289,135,0
chrXII	180802	.	A	C	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;MQRankSum=-1.583;QD=15.23;ReadPosRankSum=1.750;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:2,72:77:99:1206,126,0
chrXII	180860	.	T	C	1220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=0.395;QD=21.40;ReadPosRankSum=1.672;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1253,132,0
chrXII	182125	.	A	G	916	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:99:949,102,0
chrXII	182200	.	T	C	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.540;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.994;QD=23.21;ReadPosRankSum=1.675;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1449,153,0
chrXII	182854	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=16.71;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1169,120,0
chrXII	182869	.	G	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=17.24;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1257,135,0
chrXII	182953	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1649;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.87;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1748,183,0
chrXII	183148	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=16.79;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1376,141,0
chrXII	183155	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3966;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=17.35;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1421,147,0
chrXII	183669	.	G	A	2326	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=11.1285;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.49;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,96:99:99:2359,240,0
chrXII	183745	.	A	G	2015	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,87:92:99:2048,216,0
chrXII	183955	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.40;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1467,162,0
chrXII	184013	.	A	T	1629	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.43;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1662,171,0
chrXII	184390	.	G	A	1674	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.99;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1707,180,0
chrXII	184414	.	C	T	2003	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=24.73;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2036,207,0
chrXII	186045	.	T	C	2348	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.096;QD=21.74;ReadPosRankSum=1.668;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2381,261,0
chrXII	187694	.	C	T	1950	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.21;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1983,204,0
chrXII	187920	.	C	A	2902	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.18;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2935,295,0
chrXII	188056	.	A	G	2493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=3.046;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.130;QD=20.27;ReadPosRankSum=2.410;SB=-1.627e+03	GT:AD:DP:GQ:PL	1/1:2,121:123:99:2526,270,0
chrXII	189656	.	G	C	1849	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2684;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.01;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1882,201,0
chrXII	190353	.	T	C	3302.01	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.10;SB=-1.633e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3302,354,0
chrXII	190624	.	A	G	2193	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.89;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2226,243,0
chrXII	190947	.	C	A	3610.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=18.0849;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.07;SB=-1.399e+03	GT:AD:DP:GQ:PL	1/1:0,142:144:99:3610,367,0
chrXII	192027	.	C	T	2404	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.47;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,104:107:99:2437,261,0
chrXII	192373	.	C	T	2372	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=10.5123;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.45;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2405,249,0
chrXII	192850	.	G	C	2245	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.14;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2278,237,0
chrXII	193330	.	C	T	1813	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=21.58;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1846,189,0
chrXII	193468	.	G	A	1003	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=8.8318;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=22.29;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1036,108,0
chrXII	193629	.	A	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.26;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1146,123,0
chrXII	193664	.	C	T	1140	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.36;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1173,120,0
chrXII	193884	.	A	T	2212	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.80;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2245,231,0
chrXII	193924	.	C	T	1949	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5198;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.66;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1982,204,0
chrXII	194047	.	T	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.33;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1243,135,0
chrXII	194145	.	C	G	1740	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1773,192,0
chrXII	196473	.	G	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.27;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1054,111,0
chrXII	196515	.	T	C	787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.473;QD=19.20;ReadPosRankSum=1.646;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:87:820,87,0
chrXII	196845	.	A	G	2354	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.4053;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=24.02;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2387,252,0
chrXII	196849	.	T	C	2397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9279;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;MQRankSum=0.012;QD=23.97;ReadPosRankSum=2.400;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:2,97:100:99:2430,255,0
chrXII	197186	.	G	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.94;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1568,171,0
chrXII	197459	.	C	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=19.84;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1303,135,0
chrXII	199018	.	T	C	884	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=17.68;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:917,96,0
chrXII	199043	.	A	G	1084	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=16.42;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1117,120,0
chrXII	199813	.	G	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.47;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1858,192,0
chrXII	200350	.	A	G	1518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=5.039;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.646;QD=22.66;ReadPosRankSum=1.629;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1551,168,0
chrXII	200465	.	C	T	1807	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.47;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1840,192,0
chrXII	202234	.	G	A	2160	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.71;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2193,228,0
chrXII	204055	.	A	T	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;DP=65;Dels=0.00;FS=1.055;HaplotypeScore=57.4600;MLEAC=1;MLEAF=0.500;MQ=58.27;MQ0=0;MQRankSum=-0.320;QD=0.34;ReadPosRankSum=-2.423;SB=-7.301e+01	GT:AD:DP:GQ:PL	0/1:45,20:65:52:52,0,619
chrXII	206007	.	T	C	1343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=1.434;QD=23.16;ReadPosRankSum=1.673;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1376,144,0
chrXII	206144	.	T	C	2257	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.27;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2290,246,0
chrXII	206199	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.12;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2045,213,0
chrXII	206894	.	C	A	1879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.0525;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=1.694;QD=20.65;ReadPosRankSum=1.237;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1912,198,0
chrXII	207684	.	A	C	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.226;QD=19.13;ReadPosRankSum=1.682;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1372,147,0
chrXII	208651	.	G	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.91;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1901,195,0
chrXII	208796	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=72;Dels=0.00;FS=9.411;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-2.176;QD=17.56;ReadPosRankSum=3.282;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:4,68:72:99:1297,138,0
chrXII	208797	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7189;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.75;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1329,141,0
chrXII	209687	.	T	C	2542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=132;Dels=0.00;FS=4.873;HaplotypeScore=8.7528;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.222;QD=19.26;ReadPosRankSum=1.705;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:2,128:132:99:2575,276,0
chrXII	210539	.	A	G	1313	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.64;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1346,141,0
chrXII	213996	.	A	G	985	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.91;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1018,111,0
chrXII	214592	.	C	T	2253	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.72;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2286,249,0
chrXII	221190	.	C	T	2789	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=21.13;SB=-1.528e+03	GT:AD:DP:GQ:PL	1/1:0,128:132:99:2822,306,0
chrXII	222736	.	A	G	668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=56;Dels=0.00;FS=3.019;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;MQRankSum=-0.382;QD=11.93;ReadPosRankSum=2.316;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:75:701,75,0
chrXII	222754	.	G	A	669	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.25;MQ0=0;QD=12.87;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:75:702,75,0
chrXII	222808	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=19.69;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1234,132,0
chrXII	223071	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.12;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1602,174,0
chrXII	223258	.	T	C	785	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=16.70;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:818,87,0
chrXII	234144	.	G	A	4152.01	PASS	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.73;SB=-1.585e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:4152,430,0
chrXII	234177	.	C	G	3347.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=23.74;SB=-1.833e+03	GT:AD:DP:GQ:PL	1/1:0,138:141:99:3347,354,0
chrXII	234378	.	G	C	2038	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.91;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2071,225,0
chrXII	234472	.	G	A	3703.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=22.58;SB=-1.469e+03	GT:AD:DP:GQ:PL	1/1:0,162:164:99:3703,411,0
chrXII	234505	.	A	G	3373.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.5942;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.42;SB=-1.642e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3373,354,0
chrXII	234548	.	C	T	2551	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.7460;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.38;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2584,264,0
chrXII	234694	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=5.686;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.624;QD=22.32;ReadPosRankSum=1.697;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2265,240,0
chrXII	234767	.	G	A	2668	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=22.80;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2701,285,0
chrXII	234822	.	T	C	1988	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.7663;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.88;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2021,219,0
chrXII	234824	.	C	T	1990	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.8997;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=20.31;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2023,207,0
chrXII	234859	.	A	G	1761	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=17.79;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1794,192,0
chrXII	235332	.	G	A	1917	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.53;SB=-1.327e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:1950,201,0
chrXII	235352	.	C	T	2355	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=18.54;SB=-1.656e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2388,240,0
chrXII	235697	.	T	A	2114	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=19.57;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2147,234,0
chrXII	235798	.	C	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.68;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1677,174,0
chrXII	235891	.	G	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.96;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1512,153,0
chrXII	235940	.	G	C	1585	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.58;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1618,174,0
chrXII	236123	.	G	A	2036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.421;DP=90;Dels=0.00;FS=3.696;HaplotypeScore=10.5458;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.798;QD=22.62;ReadPosRankSum=1.070;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:2069,222,0
chrXII	236237	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.42;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1254,132,0
chrXII	236611	.	T	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.23;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1287,132,0
chrXII	236638	.	G	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=15.95;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1054,108,0
chrXII	236662	.	G	A	1304	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=18.90;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1337,138,0
chrXII	237080	.	G	A	2825	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.54;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2858,294,0
chrXII	237225	.	G	A	1025	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.50;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1058,108,0
chrXII	237608	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.25;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1358,141,0
chrXII	237728	.	A	G	1847	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.25;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1880,198,0
chrXII	237814	.	C	T	1521	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3337;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.55;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1554,168,0
chrXII	237951	.	T	A	2118	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8608;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=24.07;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2151,222,0
chrXII	237982	.	T	C	2325	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.098;DP=104;Dels=0.00;FS=4.956;HaplotypeScore=9.7186;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=1.033;QD=22.36;ReadPosRankSum=3.371;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:4,99:104:99:2358,255,0
chrXII	238074	.	A	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1687,177,0
chrXII	238148	.	A	G	1148	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.50;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1181,126,0
chrXII	238192	.	G	A	1766	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.02;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1799,189,0
chrXII	238301	.	C	T	2026	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.48;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2059,210,0
chrXII	238303	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=18.73;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:1981,210,0
chrXII	238370	.	G	A	1589	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.2427;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.11;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1622,174,0
chrXII	238466	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.444;QD=17.92;ReadPosRankSum=1.675;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1108,120,0
chrXII	238667	.	C	T	2597	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.20;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2630,279,0
chrXII	238758	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.04;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1880,213,0
chrXII	238919	.	G	C	2074	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.60;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2107,225,0
chrXII	238970	.	C	T	2532	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.61;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2565,276,0
chrXII	239098	.	C	G	2432	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.57;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2465,267,0
chrXII	239186	.	A	G	711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.173;QD=17.77;ReadPosRankSum=1.646;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:81:744,81,0
chrXII	239575	.	G	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.32;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1283,135,0
chrXII	239804	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.65;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1722,186,0
chrXII	239896	.	T	A	1024	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.90;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1057,108,0
chrXII	240031	.	G	A	1072	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=17.29;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1105,120,0
chrXII	240159	.	G	A	1247	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.50;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1280,132,0
chrXII	240627	.	G	A	1612	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.70;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1645,177,0
chrXII	240793	.	G	A	2097	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.30;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2130,219,0
chrXII	241160	.	T	C	2110	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2143,234,0
chrXII	241422	.	T	C	1912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.132;HaplotypeScore=8.4898;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.050;QD=21.48;ReadPosRankSum=2.394;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:2,86:89:99:1945,207,0
chrXII	241720	.	T	C	2374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=60.49;MQ0=0;MQRankSum=1.452;QD=23.98;ReadPosRankSum=1.697;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2407,258,0
chrXII	241757	.	A	G	2161	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=22.28;SB=-1.256e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2194,234,0
chrXII	241859	.	T	C	2579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=0.000;QD=21.49;ReadPosRankSum=1.673;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:1,117:120:99:2612,276,0
chrXII	241905	.	A	G	1902	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6819;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.20;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1935,204,0
chrXII	242101	.	C	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.0860;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.02;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1726,186,0
chrXII	242737	.	T	C	1971	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2918;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.75;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2004,213,0
chrXII	242983	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=17.76;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1454,150,0
chrXII	243420	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=0.382;QD=19.53;ReadPosRankSum=1.687;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1537,165,0
chrXII	243426	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.48;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1269,144,0
chrXII	243642	.	C	A	83.51	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=8.35;SB=-5.945e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:12:116,12,0
chrXII	243663	.	A	G	138.13	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=12.56;SB=-9.107e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:18:171,18,0
chrXII	243704	.	A	T	109.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.93;SB=-9.224e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:142,15,0
chrXII	243705	.	T	C	110.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.073;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;MQRankSum=-2.270;QD=8.48;ReadPosRankSum=2.073;SB=-8.724e+01	GT:AD:DP:GQ:PL	1/1:2,11:13:15:143,15,0
chrXII	243711	.	G	A	191.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.84;MQ0=0;QD=13.65;SB=-8.604e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:24:224,24,0
chrXII	243795	.	T	C	728	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.5184;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=24.27;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:81:761,81,0
chrXII	243937	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=26.71;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1422,153,0
chrXII	244131	.	A	G	1898	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.33;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1931,207,0
chrXII	244156	.	T	C	1542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.805;QD=21.42;ReadPosRankSum=1.635;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1575,171,0
chrXII	244378	.	C	T	2403	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.65;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2436,249,0
chrXII	244405	.	C	A	2245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.970;QD=22.45;ReadPosRankSum=1.628;SB=-1.361e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2278,243,0
chrXII	244615	.	G	A	2673	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=19.8981;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.46;SB=-1.475e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2706,282,0
chrXII	244672	.	G	A	3697.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=24.98;SB=-1.700e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3697,382,0
chrXII	244708	.	T	C	2866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.00;FS=3.114;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.514;QD=22.22;ReadPosRankSum=1.596;SB=-1.558e+03	GT:AD:DP:GQ:PL	1/1:1,126:129:99:2899,318,0
chrXII	244993	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.79;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2006,216,0
chrXII	245359	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.15;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1683,171,0
chrXII	245489	.	A	G	2408	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.12;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2441,261,0
chrXII	245635	.	C	T	2221	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=23.63;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2254,234,0
chrXII	245657	.	G	C	1847	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.73;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1880,198,0
chrXII	245789	.	G	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=16.69;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1852,192,0
chrXII	245823	.	T	C	2161	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.63;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2194,234,0
chrXII	246098	.	G	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1609,174,0
chrXII	246210	.	G	A	146.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;DP=169;Dels=0.04;FS=2.442;HaplotypeScore=33.5453;MLEAC=1;MLEAF=0.500;MQ=57.26;MQ0=0;MQRankSum=-0.590;QD=0.87;ReadPosRankSum=-4.280;SB=-5.964e+01	GT:AD:DP:GQ:PL	0/1:144,14:162:5:176,0,5
chrXII	246274	.	C	T	4248.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.560;DP=198;Dels=0.00;FS=0.000;HaplotypeScore=9.0234;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-1.537;QD=21.45;ReadPosRankSum=-0.862;SB=-1.701e+03	GT:AD:DP:GQ:PL	1/1:1,197:198:99:4248,432,0
chrXII	246315	.	T	A	2951	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0443;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.42;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2984,330,0
chrXII	246480	.	C	T	2008	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.69;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2041,207,0
chrXII	246534	.	A	G	2112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.843;DP=109;Dels=0.00;FS=2.520;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;MQRankSum=-0.046;QD=19.38;ReadPosRankSum=2.917;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:3,106:109:99:2145,225,0
chrXII	246582	.	T	A	1674	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=18.00;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1707,177,0
chrXII	246698	.	T	A	1766	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.84;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1799,195,0
chrXII	246798	.	C	T	1479	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.72;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1512,156,0
chrXII	246804	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.039;QD=19.11;ReadPosRankSum=1.594;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1466,156,0
chrXII	246852	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.50;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1437,159,0
chrXII	246916	.	A	G	1079	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.36;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1112,120,0
chrXII	247009	.	A	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.59;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1433,156,0
chrXII	247140	.	T	C	2387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.480;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.9071;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.696;QD=24.86;ReadPosRankSum=1.335;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2420,255,0
chrXII	247320	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=19.68;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1194,126,0
chrXII	247374	.	T	C	898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=-0.914;QD=12.47;ReadPosRankSum=1.684;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:931,99,0
chrXII	247377	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;QD=13.09;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1002,105,0
chrXII	247393	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.115;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=-0.041;QD=13.06;ReadPosRankSum=1.691;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1130,120,0
chrXII	247449	.	G	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.00;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:1835,195,0
chrXII	247740	.	A	G	2307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.143;QD=23.07;ReadPosRankSum=1.697;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2340,255,0
chrXII	247896	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.244;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-0.428;QD=15.95;ReadPosRankSum=1.695;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1532,165,0
chrXII	247920	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;MQRankSum=-1.452;QD=14.23;ReadPosRankSum=1.697;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1442,156,0
chrXII	247930	.	G	C	1558	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=14.98;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1591,171,0
chrXII	247958	.	A	T	2296	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.6562;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.08;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2329,240,0
chrXII	248056	.	A	C	3621.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.97;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3621,393,0
chrXII	248269	.	C	T	3270.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.51;SB=-1.963e+03	GT:AD:DP:GQ:PL	1/1:0,150:152:99:3270,334,0
chrXII	248314	.	C	G	3333.01	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.3194;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.47;SB=-1.651e+03	GT:AD:DP:GQ:PL	1/1:0,140:142:99:3333,357,0
chrXII	248515	.	C	T	2431	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=91.0376;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.99;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2464,264,0
chrXII	248559	.	G	T	2741	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.47;SB=-1.725e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2774,285,0
chrXII	248615	.	A	G	2013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0987;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.696;QD=21.19;ReadPosRankSum=1.696;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2046,210,0
chrXII	248656	.	G	T	1829	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2130;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.88;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1862,192,0
chrXII	248752	.	A	G	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=7.132;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=0.434;QD=18.43;ReadPosRankSum=2.394;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1655,180,0
chrXII	249052	.	A	C	1748	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.56;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1781,192,0
chrXII	249539	.	G	A	1616	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=20.20;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1649,180,0
chrXII	249558	.	A	G	1546	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4397;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.08;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1579,168,0
chrXII	249616	.	T	G	1190	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=17.25;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1223,132,0
chrXII	249635	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;MQRankSum=-0.240;QD=16.78;ReadPosRankSum=1.679;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1124,120,0
chrXII	249640	.	C	T	1147	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.21;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1180,120,0
chrXII	249743	.	T	C	1657	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=95;Dels=0.00;FS=5.418;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.774;QD=17.44;ReadPosRankSum=1.658;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,93:95:99:1690,180,0
chrXII	249899	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.82;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1574,168,0
chrXII	250337	.	C	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.37;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1241,132,0
chrXII	250359	.	C	T	931	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=22.17;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:964,99,0
chrXII	250412	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.67;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1529,159,0
chrXII	250583	.	T	A	2228	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.44;SB=-1.547e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2261,234,0
chrXII	250588	.	A	G	2002	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.07;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2035,219,0
chrXII	250697	.	A	G	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=67;Dels=0.00;FS=3.815;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.879;QD=18.49;ReadPosRankSum=1.679;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1272,135,0
chrXII	250711	.	G	A	1406	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=22.68;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1439,147,0
chrXII	250891	.	T	A	2402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;DP=133;Dels=0.00;FS=3.928;HaplotypeScore=18.7423;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=-1.595;QD=18.06;ReadPosRankSum=1.650;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:1,132:133:99:2435,264,0
chrXII	250979	.	A	T	2126	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.4686;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.72;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2159,234,0
chrXII	251728	.	C	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=16.88;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1282,135,0
chrXII	252448	.	T	C	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;MQRankSum=1.675;QD=22.68;ReadPosRankSum=1.675;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1439,153,0
chrXII	252615	.	T	G	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=90;Dels=0.00;FS=6.692;HaplotypeScore=15.2175;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.826;QD=16.94;ReadPosRankSum=2.338;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:2,86:90:99:1558,168,0
chrXII	252766	.	T	A	643	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=36.1587;MLEAC=2;MLEAF=1.00;MQ=42.62;MQ0=0;QD=7.84;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:69:676,69,0
chrXII	252781	.	A	G	41.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;DP=89;Dels=0.00;FS=23.110;HaplotypeScore=19.4153;MLEAC=1;MLEAF=0.500;MQ=41.34;MQ0=0;MQRankSum=4.092;QD=0.46;ReadPosRankSum=-4.222;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:75,13:89:71:71,0,368
chrXII	252782	.	G	C	41.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;DP=87;Dels=0.00;FS=20.052;HaplotypeScore=19.4153;MLEAC=1;MLEAF=0.500;MQ=40.81;MQ0=0;MQRankSum=4.216;QD=0.47;ReadPosRankSum=-4.413;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:75,12:87:71:71,0,347
chrXII	252788	.	G	C	25.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=85;Dels=0.00;FS=11.886;HaplotypeScore=19.4153;MLEAC=1;MLEAF=0.500;MQ=39.64;MQ0=0;MQRankSum=3.153;QD=0.29;ReadPosRankSum=-3.800;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:77,8:85:55:55,0,327
chrXII	252808	.	C	T	245	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=35.30;MQ0=0;QD=3.60;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:30:278,30,0
chrXII	252815	.	T	C	364	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=3.144;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.60;MQ0=0;MQRankSum=-0.315;QD=5.43;ReadPosRankSum=1.680;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:42:397,42,0
chrXII	253274	.	A	G	1813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;MQRankSum=0.822;QD=18.31;ReadPosRankSum=1.627;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1846,198,0
chrXII	253806	.	T	C	2198	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0615;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.14;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2231,240,0
chrXII	254321	.	T	C	1439	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.86;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1472,156,0
chrXII	254691	.	A	G	2971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=7.236;HaplotypeScore=12.0037;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.696;QD=23.39;ReadPosRankSum=1.705;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,126:127:99:3004,327,0
chrXII	254994	.	C	T	2908	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.07;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2941,300,0
chrXII	255134	.	T	C	1856	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=20.85;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1889,201,0
chrXII	255736	.	T	C	2243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=114;Dels=0.00;FS=3.245;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.425;QD=19.68;ReadPosRankSum=1.641;SB=-1.442e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2276,249,0
chrXII	256166	.	T	C	2253	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=22.09;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2286,249,0
chrXII	256202	.	T	C	1944	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-1.173;QD=20.68;ReadPosRankSum=1.695;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1977,213,0
chrXII	256217	.	T	G	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;DP=89;Dels=0.00;FS=2.609;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.230;QD=18.96;ReadPosRankSum=2.920;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:3,86:89:99:1720,183,0
chrXII	256226	.	T	C	1675	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=19.48;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1708,183,0
chrXII	256392	.	C	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.44;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1289,138,0
chrXII	256508	.	A	G	1956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;MQRankSum=0.589;QD=18.99;ReadPosRankSum=1.698;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1989,213,0
chrXII	256525	.	A	G	1785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;MQRankSum=-0.416;QD=17.67;ReadPosRankSum=1.697;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,99:101:99:1818,198,0
chrXII	256528	.	A	G	1839	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.6624;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=18.77;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1872,201,0
chrXII	256592	.	C	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=18.73;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1588,174,0
chrXII	256650	.	G	A	1302	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2213;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.67;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1335,144,0
chrXII	256727	.	T	C	835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=8.857;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.025;QD=17.04;ReadPosRankSum=2.350;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:93:868,93,0
chrXII	256737	.	A	G	720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.364;QD=15.00;ReadPosRankSum=1.585;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:81:753,81,0
chrXII	256826	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.467;QD=21.57;ReadPosRankSum=1.677;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1392,150,0
chrXII	257091	.	G	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.15;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1399,153,0
chrXII	257316	.	G	T	2049	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.28;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2082,216,0
chrXII	257334	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=4.514;HaplotypeScore=4.5885;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.591;QD=19.71;ReadPosRankSum=1.605;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1649,171,0
chrXII	257366	.	T	A	1551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=0.770;QD=20.68;ReadPosRankSum=1.684;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1584,165,0
chrXII	257504	.	A	G	1973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.839;QD=20.34;ReadPosRankSum=1.696;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2006,213,0
chrXII	257654	.	A	G	2307	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.07;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2340,255,0
chrXII	257917	.	T	C	3640.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.95;SB=-1.746e+03	GT:AD:DP:GQ:PL	1/1:0,151:152:99:3640,396,0
chrXII	258268	.	G	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.3934;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=17.67;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1429,150,0
chrXII	258375	.	T	C	1699	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.72;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1732,189,0
chrXII	258928	.	G	A	1422	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.10;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1455,150,0
chrXII	259051	.	C	T	1882	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.23;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1915,198,0
chrXII	259210	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.42;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1791,183,0
chrXII	259471	.	G	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1459,156,0
chrXII	259756	.	T	C	1102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.920;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;MQRankSum=1.570;QD=16.95;ReadPosRankSum=-0.487;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1135,100,0
chrXII	259762	.	C	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=10.6143;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=17.20;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1065,117,0
chrXII	260002	.	G	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.15;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1222,132,0
chrXII	260116	.	G	T	1946	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.62;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1979,207,0
chrXII	260197	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=21.36;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1443,156,0
chrXII	260496	.	G	A	1113	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.55;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1146,117,0
chrXII	260593	.	C	T	106.13	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.01;FS=0.000;HaplotypeScore=58.0085;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=1.33;SB=-9.281e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:18:139,18,0
chrXII	261030	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=18.37;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1429,153,0
chrXII	261053	.	T	C	876	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=16.85;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:909,99,0
chrXII	261101	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.45;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:886,90,0
chrXII	262367	.	G	A	1249	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3272;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.17;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1282,138,0
chrXII	262552	.	C	T	1845	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.45;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1878,192,0
chrXII	262607	.	C	T	1481	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.14;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1514,159,0
chrXII	262933	.	T	C	2884	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=25.08;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2917,309,0
chrXII	262942	.	T	A	2604	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=26.30;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2637,264,0
chrXII	263076	.	T	C	1135	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=18.31;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1168,132,0
chrXII	263103	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=17.84;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1549,168,0
chrXII	263142	.	G	C	2251	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.8786;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=22.74;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2284,240,0
chrXII	263151	.	C	T	2322	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.45;SB=-1.385e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2355,240,0
chrXII	263230	.	C	T	2251	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=24.20;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2284,234,0
chrXII	263279	.	A	G	1272	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-0.541;QD=19.87;ReadPosRankSum=1.678;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1305,144,0
chrXII	263502	.	G	A	2019	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=23.48;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2052,210,0
chrXII	263807	.	C	T	1726	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=23.01;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1759,180,0
chrXII	264597	.	C	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.31;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1272,135,0
chrXII	264903	.	C	T	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.369;QD=22.09;ReadPosRankSum=0.085;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,60:65:99:1469,150,0
chrXII	264939	.	A	G	1612	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.06;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1645,174,0
chrXII	265134	.	A	G	908	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.64;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:941,102,0
chrXII	265165	.	A	G	645	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=16.12;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:1,37:40:72:678,72,0
chrXII	265286	.	C	G	1578	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.01;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1611,171,0
chrXII	265971	.	G	A	2261	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.05;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2294,234,0
chrXII	266094	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.02;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1330,141,0
chrXII	266148	.	G	A	964	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.90;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:997,102,0
chrXII	266445	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.19;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1494,165,0
chrXII	266577	.	T	C	2585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.284;DP=119;Dels=0.00;FS=11.238;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.631;QD=21.72;ReadPosRankSum=2.367;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:2,117:119:99:2618,273,0
chrXII	266628	.	T	G	3197	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=145;Dels=0.00;FS=3.560;HaplotypeScore=12.0860;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.151;QD=22.05;ReadPosRankSum=1.708;SB=-1.605e+03	GT:AD:DP:GQ:PL	1/1:1,142:145:99:3230,342,0
chrXII	266739	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.0405;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=17.96;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1236,135,0
chrXII	266889	.	A	G	949	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.097;DP=53;Dels=0.00;FS=13.834;HaplotypeScore=3.2775;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=1.905;QD=17.91;ReadPosRankSum=2.829;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:3,50:53:64:982,64,0
chrXII	266895	.	T	C	1007	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=19.00;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1040,111,0
chrXII	266899	.	C	T	999	SnpCluster	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=18.50;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1032,108,0
chrXII	266945	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=15.22;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1388,141,0
chrXII	266966	.	C	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=13.95;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1316,144,0
chrXII	266973	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=12.69;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:1289,138,0
chrXII	267117	.	C	T	1699	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.99;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1732,180,0
chrXII	267423	.	A	G	2748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.384;DP=119;Dels=0.00;FS=16.872;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.863;QD=23.09;ReadPosRankSum=3.384;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:4,115:119:99:2781,297,0
chrXII	267989	.	T	C	2115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.155;QD=23.50;ReadPosRankSum=1.694;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2148,225,0
chrXII	268023	.	C	T	2158	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.71;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2191,231,0
chrXII	268181	.	A	G	2495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=113;Dels=0.00;FS=3.168;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.423;QD=22.08;ReadPosRankSum=1.701;SB=-1.441e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2528,270,0
chrXII	268253	.	A	G	2892	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-1.090;QD=23.32;ReadPosRankSum=1.676;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2925,312,0
chrXII	268836	.	C	T	1863	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.87;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1896,198,0
chrXII	269037	.	T	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.07;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1379,150,0
chrXII	269133	.	T	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.59;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1433,153,0
chrXII	269349	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.26;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1836,192,0
chrXII	269358	.	C	T	1701	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1365;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=19.55;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1734,177,0
chrXII	269473	.	G	T	2191	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8791;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.62;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2224,228,0
chrXII	269565	.	A	G	1618	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.01;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1651,180,0
chrXII	269839	.	A	C	1982	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.78;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2015,213,0
chrXII	270392	.	T	C	1336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=4.260;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.516;QD=20.55;ReadPosRankSum=1.678;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1369,144,0
chrXII	270995	.	G	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.66;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1551,168,0
chrXII	271759	.	G	A	2283	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.82;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2316,246,0
chrXII	272455	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.38;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1380,144,0
chrXII	272974	.	A	G	1729	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.35;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1762,189,0
chrXII	273019	.	T	C	1800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.640;QD=19.57;ReadPosRankSum=1.694;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1833,195,0
chrXII	273481	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.16;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1493,156,0
chrXII	273541	.	A	G	1212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.000;QD=19.55;ReadPosRankSum=1.565;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1245,135,0
chrXII	273722	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.93;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1252,126,0
chrXII	273894	.	A	G	644	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.12;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:72:677,72,0
chrXII	273983	.	T	C	770	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.91;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:803,87,0
chrXII	274027	.	T	C	681	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.02;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:75:714,75,0
chrXII	274041	.	A	G	681	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.46;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:78:714,78,0
chrXII	274160	.	A	G	1528	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.51;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1561,165,0
chrXII	274162	.	C	T	1347	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.22;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1380,147,0
chrXII	274243	.	G	C	1154	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=22.19;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1187,126,0
chrXII	274580	.	G	C	1611	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.18;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1644,177,0
chrXII	275113	.	T	C	830	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.04;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:863,90,0
chrXII	275215	.	C	T	2517	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=134.3428;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.78;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2550,282,0
chrXII	275647	.	G	C	2151	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.23;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2184,234,0
chrXII	275969	.	C	T	2570	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.56;SB=-1.626e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2603,273,0
chrXII	276049	.	A	G	2184	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.9127;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.41;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2217,234,0
chrXII	276224	.	A	G	2486	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.72;SB=-1.397e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2519,270,0
chrXII	276235	.	G	A	2706	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.00;SB=-1.566e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2739,291,0
chrXII	276391	.	T	C	2181	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.17;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2214,237,0
chrXII	276631	.	T	G	2066	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.98;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,91:94:99:2099,225,0
chrXII	276713	.	C	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.78;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:90:99:1903,207,0
chrXII	276795	.	C	T	2080	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=19.81;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2113,219,0
chrXII	276838	.	C	T	2388	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=15.4178;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.13;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2421,252,0
chrXII	276974	.	T	C	1824	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.499;HaplotypeScore=5.6253;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.474;QD=19.20;ReadPosRankSum=1.658;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:1,93:95:99:1857,195,0
chrXII	277307	.	T	C	1881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.082;QD=22.13;ReadPosRankSum=1.691;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1914,204,0
chrXII	277541	.	T	C	1911	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.23;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1944,213,0
chrXII	277574	.	C	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=21.11;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2017,219,0
chrXII	277604	.	A	T	1931	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.99;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1964,210,0
chrXII	277652	.	G	A	2014	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.27;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2047,213,0
chrXII	278461	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.94;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1613,168,0
chrXII	278475	.	T	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=18.90;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1356,138,0
chrXII	278491	.	C	T	1286	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5310;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.37;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1319,141,0
chrXII	278546	.	C	G	1226	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.16;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1259,132,0
chrXII	278813	.	A	T	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.006;QD=22.82;ReadPosRankSum=1.676;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1448,147,0
chrXII	278861	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.67;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1521,162,0
chrXII	278916	.	G	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.87;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1306,135,0
chrXII	279188	.	G	C	819	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=15.45;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:93:852,93,0
chrXII	279218	.	T	C	689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.768;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-0.208;QD=13.78;ReadPosRankSum=1.663;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:78:722,78,0
chrXII	279224	.	C	T	712	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=13.96;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:78:745,78,0
chrXII	279239	.	A	G	701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;MQRankSum=0.554;QD=14.02;ReadPosRankSum=1.663;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:81:734,81,0
chrXII	279272	.	C	T	788	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=16.08;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:84:821,84,0
chrXII	279352	.	A	T	1712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.780;DP=83;Dels=0.00;FS=9.652;HaplotypeScore=9.0062;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.506;QD=20.63;ReadPosRankSum=2.359;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1745,189,0
chrXII	279488	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.78;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1716,177,0
chrXII	279746	.	C	T	2325	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.6831;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.93;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2358,249,0
chrXII	279831	.	A	T	2432	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=23.61;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2465,255,0
chrXII	280016	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.88;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1499,153,0
chrXII	280198	.	A	G	1358	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.044;QD=17.19;ReadPosRankSum=1.688;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1391,150,0
chrXII	280340	.	G	A	1547	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.44;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1580,165,0
chrXII	280412	.	G	A	1940	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.82;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1973,201,0
chrXII	280717	.	C	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=15.68;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,72:79:99:1272,135,0
chrXII	281178	.	A	C	990	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.04;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1023,111,0
chrXII	281289	.	A	G	962	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.38;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:995,105,0
chrXII	281896	.	A	C	1476	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.60;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1509,162,0
chrXII	282094	.	G	A	756	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=15.75;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:81:789,81,0
chrXII	282215	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2962;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.42;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1597,165,0
chrXII	282385	.	A	G	840	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=15.27;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:873,93,0
chrXII	282399	.	G	T	635	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=13.80;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:69:668,69,0
chrXII	282495	.	A	T	751	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=15.02;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:784,87,0
chrXII	282505	.	C	T	803	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=16.39;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:836,90,0
chrXII	282557	.	A	T	1281	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=61.6642;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.12;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1314,135,0
chrXII	282741	.	G	A	859	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.05;MQ0=0;QD=15.62;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:892,96,0
chrXII	283638	.	A	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=23.10;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1904,195,0
chrXII	283645	.	T	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.23;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1767,186,0
chrXII	283710	.	T	C	2042	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.27;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2075,216,0
chrXII	283719	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=20.95;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2065,213,0
chrXII	283731	.	G	A	1952	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=19.72;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1985,207,0
chrXII	283746	.	G	T	1907	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=19.86;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1940,207,0
chrXII	283794	.	C	T	936	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=21.77;SB=-1.510e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:969,99,0
chrXII	284108	.	G	A	2170	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.7160;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=21.92;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2203,228,0
chrXII	284270	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.30;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1641,174,0
chrXII	284459	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.16;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1646,171,0
chrXII	284594	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.59;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1454,159,0
chrXII	284627	.	A	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.1002;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.70;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1856,198,0
chrXII	284813	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.411;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.376;QD=21.32;ReadPosRankSum=1.681;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1483,159,0
chrXII	284942	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.51;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1961,207,0
chrXII	284957	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.45;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1955,198,0
chrXII	284978	.	C	T	1926	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.40;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1959,201,0
chrXII	286017	.	A	G	2040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.148;QD=22.92;ReadPosRankSum=1.693;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2073,225,0
chrXII	286333	.	T	C	2220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.167;QD=22.65;ReadPosRankSum=1.697;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2253,237,0
chrXII	286348	.	C	T	2171	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.15;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2204,234,0
chrXII	286350	.	G	A	2261	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.84;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2294,237,0
chrXII	286644	.	T	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.75;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1376,138,0
chrXII	286729	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.23;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1965,216,0
chrXII	286816	.	G	T	2484	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=25.61;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2517,261,0
chrXII	286864	.	T	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.40;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1556,168,0
chrXII	287005	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.299;QD=16.97;ReadPosRankSum=1.673;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1017,108,0
chrXII	287010	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.335;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.447;QD=15.11;ReadPosRankSum=0.559;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,61:64:86:1000,86,0
chrXII	287078	.	G	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=18.55;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1647,174,0
chrXII	287397	.	A	G	1748	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.40;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1781,192,0
chrXII	287409	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=16.13;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1436,150,0
chrXII	287935	.	C	G	1553	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.19;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1586,168,0
chrXII	288047	.	A	G	1950	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.53;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1983,216,0
chrXII	288347	.	A	G	1284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-0.812;QD=20.06;ReadPosRankSum=1.678;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1317,138,0
chrXII	288386	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.62;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1367,147,0
chrXII	288473	.	T	C	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=3.031;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.689;QD=19.83;ReadPosRankSum=2.386;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1560,165,0
chrXII	288491	.	C	T	1669	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.87;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1702,177,0
chrXII	288572	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=11.1575;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.03;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1378,147,0
chrXII	288614	.	A	G	1614	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.45;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1647,177,0
chrXII	288824	.	A	G	1847	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2894;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.52;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1880,207,0
chrXII	289040	.	T	A	2211	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=23.77;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2244,243,0
chrXII	289373	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=11.7938;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.490;QD=12.15;ReadPosRankSum=1.623;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:3,127:130:99:1613,174,0
chrXII	289382	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3046;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=14.52;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1427,150,0
chrXII	289396	.	A	G	872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.137;HaplotypeScore=8.6693;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;MQRankSum=-1.386;QD=12.28;ReadPosRankSum=1.683;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:905,102,0
chrXII	289433	.	G	T	1029	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.15;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1062,114,0
chrXII	289538	.	G	A	2872	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7700;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=22.98;SB=-1.493e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2905,297,0
chrXII	289576	.	A	G	2603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-1.996;QD=19.87;ReadPosRankSum=2.336;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:2,128:131:99:2636,282,0
chrXII	289582	.	T	C	2442	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=127;Dels=0.00;FS=5.597;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;MQRankSum=0.286;QD=19.23;ReadPosRankSum=1.705;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,126:127:99:2475,264,0
chrXII	289627	.	C	T	2077	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.60;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,115:118:99:2110,231,0
chrXII	289660	.	C	G	2276	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.79;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2309,246,0
chrXII	289996	.	C	T	1910	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;QD=21.22;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1943,201,0
chrXII	289997	.	A	G	1845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=0.791;QD=20.05;ReadPosRankSum=1.657;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1878,201,0
chrXII	290016	.	C	T	1959	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=18.84;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1992,219,0
chrXII	290058	.	A	T	2435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3463;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;MQRankSum=0.990;QD=19.33;ReadPosRankSum=1.705;SB=-1.623e+03	GT:AD:DP:GQ:PL	1/1:1,125:126:99:2468,267,0
chrXII	290159	.	T	C	3441.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.9115;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.06;SB=-1.389e+03	GT:AD:DP:GQ:PL	1/1:0,141:143:99:3441,369,0
chrXII	290328	.	T	C	1891	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.91;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,92:95:99:1924,204,0
chrXII	290359	.	T	C	1843	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1148;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=20.71;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1876,198,0
chrXII	291025	.	G	T	1532	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.94;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1565,159,0
chrXII	291216	.	G	A	1009	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.40;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1042,117,0
chrXII	291384	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;MQRankSum=0.844;QD=20.12;ReadPosRankSum=1.688;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1602,171,0
chrXII	291386	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.12;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1602,171,0
chrXII	291459	.	T	C	1154	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=15.81;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1187,126,0
chrXII	291969	.	T	C	1248	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.13;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1281,135,0
chrXII	292312	.	C	A	1794	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.15;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1827,192,0
chrXII	292518	.	C	G	1705	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.58;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1738,183,0
chrXII	292529	.	T	C	1462	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.49;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1495,159,0
chrXII	292618	.	G	C	1902	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1935,210,0
chrXII	292858	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.29;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2013,216,0
chrXII	292952	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.58;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1247,132,0
chrXII	293009	.	A	G	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.217;QD=22.00;ReadPosRankSum=1.689;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1793,186,0
chrXII	293060	.	G	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.03;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1641,165,0
chrXII	293333	.	C	T	1507	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.31;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1540,159,0
chrXII	293839	.	C	T	2376	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.29;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2409,246,0
chrXII	293882	.	A	G	2975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;DP=137;Dels=0.00;FS=5.538;HaplotypeScore=8.2301;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.051;QD=21.72;ReadPosRankSum=1.274;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:1,135:137:99:3008,321,0
chrXII	294066	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=4.586;HaplotypeScore=2.6432;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.879;QD=22.94;ReadPosRankSum=1.331;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1616,174,0
chrXII	294090	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.02;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1409,144,0
chrXII	294289	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.08;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1937,201,0
chrXII	294415	.	A	G	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.483;QD=22.92;ReadPosRankSum=1.675;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1431,153,0
chrXII	294637	.	G	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.28;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1574,159,0
chrXII	294718	.	G	A	1679	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0413;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.32;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1712,180,0
chrXII	295292	.	C	T	3184	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=24.87;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,127:128:99:3217,334,0
chrXII	295360	.	C	T	2462	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.4233;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.90;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2495,255,0
chrXII	295530	.	G	A	2010	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.30;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2043,207,0
chrXII	295930	.	T	C	1675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=3.239;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.400;QD=21.47;ReadPosRankSum=1.688;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1708,180,0
chrXII	296083	.	T	A	1448	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.11;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1481,156,0
chrXII	296228	.	A	G	1342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.756;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5605;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=0.637;QD=20.33;ReadPosRankSum=2.026;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:3,62:66:99:1375,147,0
chrXII	296236	.	C	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.21;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1321,135,0
chrXII	296418	.	G	A	809	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.86;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:87:842,87,0
chrXII	296473	.	C	T	1465	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.63;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1498,159,0
chrXII	297011	.	A	T	2317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.8312;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.315;QD=20.69;ReadPosRankSum=1.701;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2350,258,0
chrXII	297157	.	G	T	2411	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2444,249,0
chrXII	298509	.	A	G	1987	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.58;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2020,216,0
chrXII	298644	.	A	G	1980	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.57;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2013,216,0
chrXII	298831	.	T	A	1532	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.32;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1565,162,0
chrXII	299174	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=59;Dels=0.00;FS=6.879;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.780;QD=20.12;ReadPosRankSum=2.367;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1220,129,0
chrXII	299209	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.50;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1069,111,0
chrXII	299315	.	G	T	1098	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.30;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1131,114,0
chrXII	299526	.	A	C	1124	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.81;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1157,123,0
chrXII	299532	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.89;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1182,129,0
chrXII	299734	.	G	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.04;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1620,165,0
chrXII	300539	.	T	C	1761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.102;QD=22.87;ReadPosRankSum=1.687;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1794,192,0
chrXII	301123	.	G	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2818;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.36;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1214,126,0
chrXII	301172	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.191;QD=20.09;ReadPosRankSum=1.678;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,63:66:99:1359,141,0
chrXII	301291	.	G	A	1737	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.56;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1770,192,0
chrXII	301957	.	G	A	1242	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.79;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1275,132,0
chrXII	301966	.	A	G	1170	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.18;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1203,129,0
chrXII	301999	.	T	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.3967;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.00;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1137,123,0
chrXII	302144	.	T	C	2235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.518;QD=22.81;ReadPosRankSum=1.589;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:2268,246,0
chrXII	302196	.	C	G	2266	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=22.66;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2299,243,0
chrXII	302282	.	T	G	1494	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.97;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1527,162,0
chrXII	302332	.	T	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.95;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1422,150,0
chrXII	302440	.	A	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.65;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1726,186,0
chrXII	302671	.	G	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.61;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,47:51:99:1186,123,0
chrXII	302764	.	A	T	1532	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.53;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1565,162,0
chrXII	303516	.	A	G	1416	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=19.67;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1449,153,0
chrXII	303601	.	C	T	964	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.53;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:997,102,0
chrXII	303604	.	G	A	908	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.79;MQ0=0;QD=17.13;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:941,96,0
chrXII	303878	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.66;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1193,126,0
chrXII	304243	.	G	A	2060	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.9483;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=25.12;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:2093,216,0
chrXII	304352	.	G	A	880	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=16.92;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:96:913,96,0
chrXII	304381	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.06;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:990,105,0
chrXII	305200	.	G	A	1121	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.98;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1154,120,0
chrXII	305324	.	G	A	934	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.68;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:967,102,0
chrXII	305397	.	A	C	1299	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.20;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1332,144,0
chrXII	305614	.	C	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.21;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1687,186,0
chrXII	305731	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.877;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=0.605;QD=18.88;ReadPosRankSum=1.690;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1600,168,0
chrXII	305736	.	C	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=19.01;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1611,165,0
chrXII	305771	.	A	G	1543	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=17.94;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1576,174,0
chrXII	306415	.	A	G	2689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=118;Dels=0.00;FS=5.859;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.716;QD=22.79;ReadPosRankSum=2.750;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:3,114:118:99:2722,294,0
chrXII	306665	.	C	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.58;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1650,183,0
chrXII	306814	.	A	G	1753	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.8079;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.91;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1786,189,0
chrXII	307503	.	G	T	1716	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.51;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1749,183,0
chrXII	307601	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1587,168,0
chrXII	307980	.	T	C	1572	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.83;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1605,168,0
chrXII	308630	.	G	A	1445	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.94;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1478,153,0
chrXII	308703	.	T	C	1456	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6922;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.80;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1489,159,0
chrXII	308802	.	C	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.38;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1913,195,0
chrXII	309238	.	A	C	1993	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.13;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2026,222,0
chrXII	310006	.	G	T	2007	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.30;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2040,213,0
chrXII	310404	.	A	G	822	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=18.68;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:855,93,0
chrXII	310613	.	C	T	1111	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.69;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1144,117,0
chrXII	310770	.	C	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.42;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1468,156,0
chrXII	310983	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.55;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1175,123,0
chrXII	311265	.	A	C	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=10.4365;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.168;QD=21.59;ReadPosRankSum=1.676;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1393,147,0
chrXII	311784	.	T	C	1342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=3.438;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.299;QD=20.97;ReadPosRankSum=1.678;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1375,144,0
chrXII	311889	.	G	A	2146	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.33;SB=-1.302e+03	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2179,225,0
chrXII	311937	.	G	A	2063	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.3716;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.03;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2096,234,0
chrXII	312135	.	G	A	1913	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=23.91;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1946,201,0
chrXII	312163	.	T	C	1943	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.13;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1976,210,0
chrXII	312168	.	G	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.49;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1832,189,0
chrXII	312399	.	G	A	1785	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.51;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1818,189,0
chrXII	312573	.	T	C	1797	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.91;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1830,201,0
chrXII	312732	.	G	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.57;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2017,207,0
chrXII	312984	.	T	A	1001	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=16.97;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1034,108,0
chrXII	313107	.	T	G	1973	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.10;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2006,216,0
chrXII	313320	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.45;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1363,144,0
chrXII	313374	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.09;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1319,141,0
chrXII	313809	.	A	G	2008	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=21.59;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2041,216,0
chrXII	313812	.	G	A	1864	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=20.04;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1897,204,0
chrXII	313848	.	G	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.75;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1317,135,0
chrXII	313878	.	A	G	1519	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=22.01;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1552,162,0
chrXII	315348	.	G	C	1348	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1381,150,0
chrXII	315383	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.53;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1540,165,0
chrXII	315459	.	T	C	2340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.607;DP=112;Dels=0.00;FS=12.212;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.916;QD=20.89;ReadPosRankSum=3.705;SB=-1.386e+03	GT:AD:DP:GQ:PL	1/1:5,107:112:99:2373,258,0
chrXII	315521	.	C	T	1837	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=20.87;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1870,204,0
chrXII	315642	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.98;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1271,141,0
chrXII	315906	.	G	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.24;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1322,138,0
chrXII	315907	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.60;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1242,129,0
chrXII	316223	.	A	C	1955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.379;QD=19.95;ReadPosRankSum=1.697;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1988,213,0
chrXII	316490	.	G	A	2410	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.59;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2443,249,0
chrXII	316628	.	T	C	1260	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.00;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1293,141,0
chrXII	317315	.	G	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.86;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1429,156,0
chrXII	317498	.	G	A	1842	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.70;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1875,204,0
chrXII	317534	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.16;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1345,141,0
chrXII	317549	.	T	C	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.245;QD=19.46;ReadPosRankSum=1.624;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1298,135,0
chrXII	318011	.	C	T	2667	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.04;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2700,282,0
chrXII	318348	.	A	G	2060	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.52;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2093,222,0
chrXII	318498	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.96;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1670,177,0
chrXII	319560	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.32;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1289,141,0
chrXII	319635	.	A	G	1436	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.16;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1469,159,0
chrXII	319896	.	A	G	822	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=19.57;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:855,90,0
chrXII	320465	.	C	T	3323.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=9.0596;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.08;SB=-1.654e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3323,348,0
chrXII	320775	.	T	C	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=103;Dels=0.00;FS=18.068;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.450;QD=17.98;ReadPosRankSum=2.891;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:3,98:103:99:1885,204,0
chrXII	320814	.	G	A	2088	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.64;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2121,216,0
chrXII	320904	.	G	A	2001	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.99;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2034,213,0
chrXII	321077	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=21.54;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1864,192,0
chrXII	321084	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=19.98;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1651,171,0
chrXII	321294	.	C	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.14;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1676,171,0
chrXII	321345	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.00;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1331,135,0
chrXII	321460	.	A	G	1392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.983;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.950;QD=18.81;ReadPosRankSum=2.383;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1425,131,0
chrXII	321772	.	T	C	1249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5509;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=0.678;QD=18.10;ReadPosRankSum=1.682;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1282,138,0
chrXII	321825	.	A	G	1202	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.26;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1235,132,0
chrXII	322042	.	C	T	778	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=15.25;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:87:811,87,0
chrXII	322071	.	T	C	720	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=12.63;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:81:753,81,0
chrXII	322311	.	T	G	771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.400;QD=19.77;ReadPosRankSum=1.644;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:90:804,90,0
chrXII	322903	.	G	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.70;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1213,132,0
chrXII	323271	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.36;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1614,168,0
chrXII	323467	.	G	A	2343	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.20;SB=-1.376e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2376,243,0
chrXII	323570	.	T	A	1558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.522;QD=23.61;ReadPosRankSum=1.680;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1591,171,0
chrXII	323599	.	A	G	1635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.732;QD=20.44;ReadPosRankSum=1.687;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1668,177,0
chrXII	323636	.	A	G	1714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;MQRankSum=0.208;QD=16.97;ReadPosRankSum=1.697;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:1,99:101:99:1747,189,0
chrXII	323645	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.811;DP=102;Dels=0.00;FS=9.564;HaplotypeScore=7.0687;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.970;QD=16.35;ReadPosRankSum=2.931;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:3,98:102:99:1701,189,0
chrXII	323709	.	G	A	2872	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=23.74;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2905,315,0
chrXII	324014	.	A	G	1959	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.21;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1992,213,0
chrXII	324173	.	A	C	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.8792;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.351;QD=18.30;ReadPosRankSum=1.656;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1717,186,0
chrXII	324449	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.90;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1201,129,0
chrXII	324470	.	G	A	1186	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.56;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1219,126,0
chrXII	324662	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.50;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1443,150,0
chrXII	325271	.	G	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.31;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1400,144,0
chrXII	325334	.	C	A	920	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.40;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:953,96,0
chrXII	325346	.	C	T	689	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.62;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:75:722,75,0
chrXII	325403	.	C	A	907	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.09;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:940,99,0
chrXII	326213	.	A	G	1781	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5084;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.54;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1814,192,0
chrXII	326408	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.963;DP=76;Dels=0.00;FS=6.079;HaplotypeScore=14.7901;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.211;QD=22.95;ReadPosRankSum=2.320;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1777,171,0
chrXII	326975	.	C	T	1967	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.38;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2000,216,0
chrXII	326981	.	T	C	2225	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.41;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2258,240,0
chrXII	327112	.	A	G	1902	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.12;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1935,207,0
chrXII	327373	.	T	C	1707	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7222;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=18.76;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1740,186,0
chrXII	327506	.	C	A	639	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=17.75;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:69:672,69,0
chrXII	327514	.	A	T	696	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.81;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:72:729,72,0
chrXII	328168	.	G	A	2454	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2487,258,0
chrXII	328471	.	C	T	1118	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.28;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1151,123,0
chrXII	328528	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=14.16;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1152,123,0
chrXII	328635	.	C	T	1899	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.34;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1932,207,0
chrXII	328804	.	G	A	1433	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1466,156,0
chrXII	328989	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.76;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1278,138,0
chrXII	328990	.	A	G	1240	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.37;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1273,138,0
chrXII	330265	.	C	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.96;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1186,126,0
chrXII	330526	.	A	G	925	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.374;QD=15.42;ReadPosRankSum=1.673;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,57:60:99:958,108,0
chrXII	330832	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.76;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1560,168,0
chrXII	331041	.	T	G	1009	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=19.04;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1042,111,0
chrXII	331044	.	C	T	1111	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=20.57;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1144,117,0
chrXII	331075	.	G	C	1187	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.52;MQ0=0;QD=19.15;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1220,132,0
chrXII	331078	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=18.08;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1118,123,0
chrXII	331090	.	T	C	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;MQRankSum=0.108;QD=16.34;ReadPosRankSum=1.570;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1079,117,0
chrXII	331273	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.8855;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=16.84;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1313,144,0
chrXII	331395	.	C	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.67;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1485,153,0
chrXII	331937	.	T	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.60;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1706,177,0
chrXII	331984	.	C	T	1248	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.4468;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.11;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1281,132,0
chrXII	332094	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.35;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1852,189,0
chrXII	332157	.	A	T	2648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-0.615;QD=21.35;ReadPosRankSum=1.704;SB=-1.510e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2681,273,0
chrXII	332457	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=82;Dels=0.00;FS=3.644;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.235;QD=20.09;ReadPosRankSum=1.689;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1680,183,0
chrXII	332566	.	G	A	2374	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.39;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2407,246,0
chrXII	335529	.	G	T	1494	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.6853;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.98;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1527,162,0
chrXII	335835	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.448;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.675;QD=19.66;ReadPosRankSum=1.562;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1232,129,0
chrXII	336921	.	A	T	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=70;Dels=0.00;FS=6.086;HaplotypeScore=12.3057;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.490;QD=18.81;ReadPosRankSum=2.377;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1350,150,0
chrXII	336975	.	G	A	1699	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.60;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1732,177,0
chrXII	337003	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.571;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.575;QD=22.33;ReadPosRankSum=1.627;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1529,162,0
chrXII	338262	.	G	A	2003	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.29;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2036,207,0
chrXII	338295	.	C	T	1876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.979;HaplotypeScore=4.6810;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.616;QD=20.62;ReadPosRankSum=0.423;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1909,204,0
chrXII	338892	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.58;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1220,129,0
chrXII	339111	.	G	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6562;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.83;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1452,159,0
chrXII	339377	.	T	C	2254	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=21.88;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2287,246,0
chrXII	339393	.	T	C	1852	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=21.05;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1885,204,0
chrXII	339496	.	G	A	988	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.16;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1021,108,0
chrXII	339567	.	G	A	1516	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.21;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1549,159,0
chrXII	339777	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=4.472;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;MQRankSum=-1.534;QD=21.24;ReadPosRankSum=1.683;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1520,165,0
chrXII	339830	.	C	T	835	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.41;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:90:868,90,0
chrXII	341688	.	T	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.40;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1855,201,0
chrXII	342533	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.30;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2120,219,0
chrXII	348674	.	G	C	1065	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.73;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1098,117,0
chrXII	352291	.	G	A	1936	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.51;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1969,201,0
chrXII	352615	.	C	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.18;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1664,177,0
chrXII	354067	.	G	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.12;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1360,147,0
chrXII	355621	.	T	C	1961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=94;Dels=0.00;FS=12.368;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.506;QD=20.86;ReadPosRankSum=2.904;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:3,91:94:99:1994,207,0
chrXII	357438	.	G	T	2667	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.99;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2700,282,0
chrXII	357723	.	C	T	2208	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.64;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2241,240,0
chrXII	361284	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.02;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1134,120,0
chrXII	361865	.	A	G	1718	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=7.003;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.385;QD=21.21;ReadPosRankSum=1.710;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1751,192,0
chrXII	364406	.	T	C	1125	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.45;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1158,123,0
chrXII	365170	.	G	A	2487	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.24;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2520,261,0
chrXII	367056	.	C	T	2000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.666;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.694;QD=21.05;ReadPosRankSum=1.580;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2033,192,0
chrXII	367673	.	A	G	1095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=4.168;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.111;QD=23.30;ReadPosRankSum=1.659;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1128,120,0
chrXII	368770	.	C	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.75;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1125,120,0
chrXII	369062	.	G	A	2360	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.6229;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.58;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2393,249,0
chrXII	369482	.	A	G	848	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=8.9116;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.92;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,35:36:96:881,96,0
chrXII	369632	.	A	G	764	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=11.954;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=1.427;QD=16.61;ReadPosRankSum=2.343;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:87:797,87,0
chrXII	369646	.	C	T	790	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.75;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:823,84,0
chrXII	369801	.	A	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=24.37;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1666,174,0
chrXII	370090	.	A	G	2364	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.06;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2397,255,0
chrXII	370156	.	G	A	3506.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=23.07;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3506,367,0
chrXII	370176	.	A	T	2853	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.78;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2886,309,0
chrXII	370434	.	A	T	1168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.115;QD=19.47;ReadPosRankSum=1.675;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1201,120,0
chrXII	370558	.	G	A	593	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.77;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:626,69,0
chrXII	370731	.	A	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.95;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1470,153,0
chrXII	370785	.	T	C	1063	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1096,117,0
chrXII	370903	.	C	A	901	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=15.81;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:96:934,96,0
chrXII	371097	.	T	C	2731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=118;Dels=0.00;FS=3.036;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.010;QD=23.14;ReadPosRankSum=2.408;SB=-1.534e+03	GT:AD:DP:GQ:PL	1/1:2,116:118:99:2764,294,0
chrXII	371874	.	T	A	1970	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.74;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2003,213,0
chrXII	372039	.	C	T	1721	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.58;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1754,192,0
chrXII	372408	.	A	T	2245	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.4292;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.39;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2278,237,0
chrXII	372524	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3136;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.05;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1775,189,0
chrXII	372946	.	C	T	2863	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.85;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2896,289,0
chrXII	373070	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.8338;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=16.63;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1729,177,0
chrXII	373396	.	G	C	1640	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=25.23;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1673,183,0
chrXII	373667	.	G	A	217.01	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.60;MQ0=0;QD=11.42;SB=-8.402e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:27:250,27,0
chrXII	373960	.	C	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=39.28;MQ0=0;QD=24.71;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1491,153,0
chrXII	374337	.	C	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.71;MQ0=0;QD=0.22;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:0,54:54:6:43,6,0
chrXII	374655	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=20.51;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1489,156,0
chrXII	375107	.	G	A	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.3986;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=1.149;QD=19.66;ReadPosRankSum=-0.728;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2137,228,0
chrXII	375109	.	A	G	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.1872;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.728;QD=19.48;ReadPosRankSum=-0.955;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2137,231,0
chrXII	375126	.	T	C	2083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.935;DP=108;Dels=0.00;FS=2.528;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-0.374;QD=19.29;ReadPosRankSum=2.879;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:3,105:108:99:2116,228,0
chrXII	375208	.	A	G	1850	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=21.76;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1883,204,0
chrXII	375222	.	C	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=22.07;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1821,192,0
chrXII	375308	.	C	T	106.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=72;Dels=0.00;FS=3.986;HaplotypeScore=145.8977;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.413;QD=1.47;ReadPosRankSum=-3.136;SB=-6.501e+01	GT:AD:DP:GQ:PL	0/1:56,16:72:99:136,0,124
chrXII	375335	.	C	T	223.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=148.7347;MLEAC=2;MLEAF=1.00;MQ=37.09;MQ0=1;MQRankSum=1.429;QD=2.54;ReadPosRankSum=0.314;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:4,84:88:5:254,5,0
chrXII	375724	.	C	T	1375	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=19.10;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1408,144,0
chrXII	375813	.	G	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.03;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1547,162,0
chrXII	375913	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.92;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1308,138,0
chrXII	375973	.	C	T	1234	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.90;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1267,129,0
chrXII	376338	.	C	T	1625	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.90;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1658,171,0
chrXII	377477	.	C	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.01;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1750,183,0
chrXII	377512	.	C	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.06;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1291,132,0
chrXII	377522	.	G	T	1066	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=17.48;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1099,120,0
chrXII	377594	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=16.60;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1062,114,0
chrXII	377619	.	T	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.65;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1152,123,0
chrXII	377691	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.54;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1067,114,0
chrXII	377739	.	A	G	941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=-0.990;QD=16.80;ReadPosRankSum=1.670;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:974,105,0
chrXII	377810	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=82;Dels=0.02;FS=13.061;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.481;QD=17.37;ReadPosRankSum=2.836;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:3,77:80:99:1457,153,0
chrXII	377948	.	T	A	2283	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=24.82;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2316,237,0
chrXII	378020	.	A	C	1801	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.70;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1834,195,0
chrXII	378215	.	T	C	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.488;QD=20.96;ReadPosRankSum=1.683;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1521,165,0
chrXII	378221	.	G	C	1615	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=19.23;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1648,174,0
chrXII	378260	.	T	C	2052	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.121;QD=20.12;ReadPosRankSum=1.664;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2085,225,0
chrXII	379144	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.17;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1314,138,0
chrXII	382340	.	G	A	3163	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=5.8258;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.09;SB=-1.796e+03	GT:AD:DP:GQ:PL	1/1:0,136:137:99:3196,328,0
chrXII	382560	.	T	C	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=5.549;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=1.164;QD=22.49;ReadPosRankSum=1.675;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1405,150,0
chrXII	382590	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.38;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1623,174,0
chrXII	382692	.	A	T	1701	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.53;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1734,186,0
chrXII	382777	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.35;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1265,132,0
chrXII	382783	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=18.38;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1375,138,0
chrXII	383137	.	A	G	1605	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.29;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1638,171,0
chrXII	383230	.	A	G	1682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.227;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.634;QD=20.51;ReadPosRankSum=1.690;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1715,183,0
chrXII	383295	.	G	A	1913	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.93;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1946,204,0
chrXII	383350	.	G	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.89;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1850,201,0
chrXII	383428	.	T	C	1666	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.36;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1699,180,0
chrXII	383587	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.53;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1576,165,0
chrXII	383611	.	C	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.24;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1649,180,0
chrXII	383695	.	G	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.35;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1574,171,0
chrXII	383785	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.4610;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.18;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1405,153,0
chrXII	383848	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.09;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1623,171,0
chrXII	383932	.	T	C	1975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.106;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=0.527;QD=21.47;ReadPosRankSum=1.694;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2008,216,0
chrXII	386021	.	A	G	2614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=12.710;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.098;QD=25.63;ReadPosRankSum=2.401;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:2647,276,0
chrXII	386390	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.27;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1499,156,0
chrXII	386841	.	G	A	1530	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.50;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1563,162,0
chrXII	387257	.	A	G	1382	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.46;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1415,147,0
chrXII	387754	.	C	T	731	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:764,78,0
chrXII	387828	.	G	A	1951	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7791;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.71;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1984,219,0
chrXII	388456	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.0819;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.60;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1269,138,0
chrXII	388536	.	G	A	1171	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=24.91;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1204,123,0
chrXII	388641	.	A	T	2042	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=11.3154;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.60;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2075,213,0
chrXII	388801	.	A	G	2076	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=23.86;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2109,237,0
chrXII	388886	.	T	C	925	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.19;MQ0=0;QD=15.16;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:61:99:958,102,0
chrXII	388891	.	C	T	961	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=16.57;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:994,102,0
chrXII	388903	.	G	A	813	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=14.02;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:93:846,93,0
chrXII	388904	.	G	C	855	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=14.74;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:96:888,96,0
chrXII	388930	.	G	A	677	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;QD=10.75;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:75:710,75,0
chrXII	388945	.	G	T	761	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=13.59;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:81:794,81,0
chrXII	389110	.	A	T	2209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.149;QD=20.45;ReadPosRankSum=1.700;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2242,231,0
chrXII	389118	.	C	G	2027	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=19.30;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,102:105:99:2060,219,0
chrXII	389749	.	G	A	1598	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.89;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1631,177,0
chrXII	389767	.	C	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.03;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1422,147,0
chrXII	389815	.	A	G	834	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=14.89;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:96:867,96,0
chrXII	389841	.	A	G	755	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=-0.460;QD=15.41;ReadPosRankSum=1.662;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:84:788,84,0
chrXII	389845	.	A	G	721	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=6.284;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;MQRankSum=-2.208;QD=14.14;ReadPosRankSum=2.256;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:81:754,81,0
chrXII	389851	.	A	G	743	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=48;Dels=0.00;FS=3.087;HaplotypeScore=5.0392;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;MQRankSum=-0.343;QD=15.48;ReadPosRankSum=2.345;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:2,45:48:81:776,81,0
chrXII	389959	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.79;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1297,132,0
chrXII	390016	.	A	G	955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.962;QD=17.69;ReadPosRankSum=1.604;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:988,105,0
chrXII	390142	.	T	C	266	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=10.23;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:0,26:26:33:299,33,0
chrXII	390187	.	G	A	408	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=12.36;SB=-9.101e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:45:441,45,0
chrXII	390232	.	G	A	614	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.06;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:69:647,69,0
chrXII	390280	.	C	T	507	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=13.34;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:54:540,54,0
chrXII	390302	.	T	C	511	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=13.81;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:57:544,57,0
chrXII	390311	.	A	T	491	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=13.64;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:57:524,57,0
chrXII	390318	.	A	G	493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.433;QD=15.41;ReadPosRankSum=1.625;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:57:526,57,0
chrXII	390483	.	C	T	604	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=25.17;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:66:637,66,0
chrXII	390661	.	A	G	784	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=23.76;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:87:817,87,0
chrXII	390720	.	T	C	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.746;QD=21.41;ReadPosRankSum=2.365;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1275,135,0
chrXII	390724	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=23.08;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1395,141,0
chrXII	390813	.	G	A	1119	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9482;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=18.97;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1152,123,0
chrXII	390831	.	T	C	891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=53;Dels=0.00;FS=2.932;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;MQRankSum=-0.642;QD=16.81;ReadPosRankSum=2.213;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:2,50:53:99:924,99,0
chrXII	390856	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=19.03;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1175,129,0
chrXII	390907	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5116;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.12;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1295,138,0
chrXII	390963	.	G	A	895	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=14.21;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:96:928,96,0
chrXII	391073	.	T	C	2073	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=24.39;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2106,228,0
chrXII	391130	.	C	G	1935	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=24.49;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1968,213,0
chrXII	391214	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=20.00;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1213,132,0
chrXII	391232	.	A	T	1425	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.2451;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.07;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1458,150,0
chrXII	391272	.	T	A	1622	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=23.85;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1655,171,0
chrXII	391429	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.2198;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.365;QD=17.63;ReadPosRankSum=1.987;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:3,72:76:99:1373,127,0
chrXII	391658	.	G	A	1831	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.06;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1864,201,0
chrXII	392062	.	C	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.93;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1603,168,0
chrXII	392412	.	T	A	1163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=56;Dels=0.00;FS=2.915;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.247;QD=20.77;ReadPosRankSum=2.271;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1196,126,0
chrXII	392469	.	A	G	1352	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=23.31;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1385,144,0
chrXII	392630	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.96;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1351,141,0
chrXII	393148	.	A	G	1148	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.39;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1181,129,0
chrXII	393162	.	C	T	952	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=15.61;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:985,105,0
chrXII	393184	.	G	C	1149	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=15.74;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1182,129,0
chrXII	393360	.	G	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.17;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1287,135,0
chrXII	394069	.	G	A	1058	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=24.05;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1091,120,0
chrXII	394070	.	T	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=23.38;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1085,117,0
chrXII	394220	.	G	A	1610	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.09;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1643,180,0
chrXII	394534	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.48;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1494,156,0
chrXII	395053	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=11.1646;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.68;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1322,141,0
chrXII	395087	.	A	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.86;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1279,138,0
chrXII	395140	.	T	G	1389	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=71;Dels=0.00;FS=7.928;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.376;QD=19.56;ReadPosRankSum=2.379;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:2,67:71:99:1422,150,0
chrXII	395203	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=17.05;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1516,159,0
chrXII	395211	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=15.46;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1610,174,0
chrXII	395250	.	A	G	2432	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.01;SB=-1.715e+03	GT:AD:DP:GQ:PL	1/1:0,132:135:99:2465,264,0
chrXII	395272	.	A	G	2732	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=19.24;SB=-1.535e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2765,306,0
chrXII	395347	.	A	C	3134	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.32;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3167,339,0
chrXII	395350	.	G	A	3197	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=21.75;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,146:147:99:3230,328,0
chrXII	395419	.	C	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.94;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1253,129,0
chrXII	395431	.	C	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.65;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1320,135,0
chrXII	395543	.	T	G	5805.01	PASS	AC=2;AF=1.00;AN=2;DP=259;Dels=0.00;FS=0.000;HaplotypeScore=9.1229;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=22.41;SB=-3.272e+03	GT:AD:DP:GQ:PL	1/1:0,258:259:99:5805,633,0
chrXII	395587	.	G	A	5855.01	PASS	AC=2;AF=1.00;AN=2;DP=273;Dels=0.00;FS=0.000;HaplotypeScore=262.0277;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=21.45;SB=-3.501e+03	GT:AD:DP:GQ:PL	1/1:0,271:273:99:5855,616,0
chrXII	395597	.	G	T	5347.01	PASS	AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.89;SB=-3.295e+03	GT:AD:DP:GQ:PL	1/1:0,256:256:99:5347,553,0
chrXII	395690	.	G	A	3378.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.67;SB=-1.960e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3378,366,0
chrXII	395774	.	C	T	2161	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=18.79;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2194,219,0
chrXII	396529	.	T	C	987	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.14;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1020,108,0
chrXII	396641	.	A	G	1436	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.12;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1469,156,0
chrXII	396805	.	G	A	1753	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.38;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1786,195,0
chrXII	396967	.	G	T	1464	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=23.24;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1497,153,0
chrXII	397180	.	A	G	2346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=104;Dels=0.00;FS=14.444;HaplotypeScore=8.9656;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.155;QD=22.56;ReadPosRankSum=2.933;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:3,101:104:99:2379,261,0
chrXII	397949	.	T	C	3415.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.0425;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.002;QD=23.07;ReadPosRankSum=1.591;SB=-1.726e+03	GT:AD:DP:GQ:PL	1/1:1,146:148:99:3415,366,0
chrXII	398325	.	A	G	1724	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.39;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1757,186,0
chrXII	398693	.	T	C	2426	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0728;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.27;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2459,258,0
chrXII	398871	.	T	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1685,180,0
chrXII	398908	.	G	A	1879	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.64;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1912,198,0
chrXII	399343	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=14.86;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:84:791,84,0
chrXII	399406	.	C	T	1478	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.19;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1511,156,0
chrXII	399414	.	G	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=17.87;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1641,174,0
chrXII	399563	.	G	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.2852;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=17.70;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1254,138,0
chrXII	399573	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.9261;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=17.03;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,73:77:99:1344,144,0
chrXII	400451	.	G	A	1757	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.92;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1790,186,0
chrXII	401097	.	C	T	1958	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5930;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.76;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1991,207,0
chrXII	401532	.	C	G	797	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=15.94;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:90:830,90,0
chrXII	402335	.	T	G	1923	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1956,213,0
chrXII	402368	.	G	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1513,156,0
chrXII	402464	.	G	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.58;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2400,252,0
chrXII	402496	.	A	G	3278.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=151;Dels=0.00;FS=2.962;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.860;QD=21.71;ReadPosRankSum=2.417;SB=-1.796e+03	GT:AD:DP:GQ:PL	1/1:2,148:151:99:3278,348,0
chrXII	402646	.	T	C	2056	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.35;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2089,222,0
chrXII	402842	.	G	A	2932	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.94;SB=-1.672e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2965,327,0
chrXII	402879	.	G	C	2023	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.83;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2056,225,0
chrXII	402932	.	T	C	1923	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.24;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1956,207,0
chrXII	402998	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.068;QD=20.30;ReadPosRankSum=1.637;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1515,162,0
chrXII	403049	.	G	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=19.96;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1550,165,0
chrXII	403061	.	A	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.34;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1522,162,0
chrXII	403089	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=2.881;HaplotypeScore=5.7659;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-1.262;QD=19.01;ReadPosRankSum=2.361;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1611,171,0
chrXII	403321	.	C	A	2146	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=25.25;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2179,219,0
chrXII	405362	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=98;Dels=0.00;FS=5.674;HaplotypeScore=16.1232;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.901;QD=18.52;ReadPosRankSum=2.858;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:3,89:98:99:1848,198,0
chrXII	407549	.	G	C	1308	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.95;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:57:99:1341,144,0
chrXII	407814	.	T	G	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.281;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.629;QD=20.91;ReadPosRankSum=1.577;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1434,153,0
chrXII	408647	.	G	A	1407	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.00;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1440,150,0
chrXII	408895	.	G	A	2136	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.00;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2169,222,0
chrXII	411601	.	T	C	857	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=16.17;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:890,99,0
chrXII	413007	.	C	G	1429	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7287;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1462,159,0
chrXII	416876	.	C	G	2253	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3020;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.25;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2286,255,0
chrXII	416918	.	G	A	2059	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.63;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2092,213,0
chrXII	417289	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3140;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.31;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1617,168,0
chrXII	417956	.	G	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.05;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1531,165,0
chrXII	418313	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.2042;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.126;QD=17.46;ReadPosRankSum=1.632;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,69:74:99:1325,147,0
chrXII	423150	.	C	G	1558	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0653;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.00;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1591,177,0
chrXII	423854	.	G	C	2569	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.94;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2602,276,0
chrXII	430049	.	G	A	2754	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.03;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2787,303,0
chrXII	430853	.	A	G	2202	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2235,243,0
chrXII	432399	.	C	A	2304	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.75;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2337,243,0
chrXII	433077	.	T	C	2913	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=131;Dels=0.00;FS=4.064;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.093;QD=22.24;ReadPosRankSum=1.705;SB=-1.256e+03	GT:AD:DP:GQ:PL	1/1:1,129:131:99:2946,309,0
chrXII	433955	.	A	T	195.03	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.00;SB=-2.902e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:24:228,24,0
chrXII	433961	.	G	T	195.03	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.73;SB=-2.903e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:24:228,24,0
chrXII	434602	.	T	A	3190	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=163;Dels=0.00;FS=4.718;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-0.903;QD=19.57;ReadPosRankSum=1.605;SB=-1.560e+03	GT:AD:DP:GQ:PL	1/1:1,162:163:99:3223,360,0
chrXII	434603	.	A	T	3046	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.01;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.80;SB=-1.466e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3079,351,0
chrXII	443985	.	A	T	597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-1.410;QD=13.88;ReadPosRankSum=1.571;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:66:630,66,0
chrXII	444126	.	A	T	744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.377;QD=18.60;ReadPosRankSum=1.644;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:81:777,81,0
chrXII	444168	.	T	C	998	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.48;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1031,111,0
chrXII	444569	.	C	T	1796	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.18;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1829,189,0
chrXII	444593	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.22;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1853,189,0
chrXII	444668	.	G	A	2356	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=27.08;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2389,243,0
chrXII	444760	.	T	C	1963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1074;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=-1.552;QD=20.45;ReadPosRankSum=1.660;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1996,216,0
chrXII	444770	.	C	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.8803;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.19;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1911,195,0
chrXII	444806	.	T	C	2246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.032;QD=22.46;ReadPosRankSum=1.697;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2279,240,0
chrXII	444914	.	T	C	2093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=0.065;QD=19.75;ReadPosRankSum=1.699;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2126,225,0
chrXII	444929	.	T	C	1896	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.01;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=19.35;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1929,204,0
chrXII	445043	.	G	A	2595	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=21.99;SB=-1.586e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2628,270,0
chrXII	445082	.	A	C	1669	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=116;Dels=0.00;FS=6.372;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.615;QD=14.39;ReadPosRankSum=2.385;SB=-1.365e+03	GT:AD:DP:GQ:PL	1/1:2,112:116:99:1702,183,0
chrXII	445085	.	C	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=15.28;SB=-1.389e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:1760,183,0
chrXII	445132	.	G	A	2428	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.39;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2461,252,0
chrXII	445179	.	C	T	2810	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=22.48;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2843,303,0
chrXII	445227	.	T	C	2470	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9115;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.92;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2503,276,0
chrXII	445298	.	G	T	2491	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=17.79;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2524,276,0
chrXII	445923	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=74;Dels=0.00;FS=5.602;HaplotypeScore=13.4070;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.301;QD=18.03;ReadPosRankSum=2.905;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1367,147,0
chrXII	447548	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.97;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1085,117,0
chrXII	449509	.	C	G	904	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.09;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:937,99,0
chrXII	450044	.	C	T	2528	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2285;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.77;SB=-1.448e+03	GT:AD:DP:GQ:PL	1/1:0,108:111:99:2561,264,0
chrXII	450246	.	C	G	1466	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.7988;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.05;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1499,159,0
chrXII	459813	.	T	C	166.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420;DP=1000;DS;Dels=0.00;FS=9.401;HaplotypeScore=582.4850;MLEAC=1;MLEAF=0.500;MQ=36.89;MQ0=7;MQRankSum=-2.950;QD=0.17;ReadPosRankSum=5.456;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:840,112:997:99:196,0,2094
chrXII	459816	.	T	C	245.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.943;DP=1000;DS;Dels=0.00;FS=159.293;HaplotypeScore=316.8792;MLEAC=1;MLEAF=0.500;MQ=37.58;MQ0=3;MQRankSum=-3.037;QD=0.25;ReadPosRankSum=4.358;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:881,113:999:99:275,0,3174
chrXII	460417	.	T	A	511	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=8.122;DP=1000;DS;Dels=0.00;FS=190.469;HaplotypeScore=842.5964;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=-0.793;QD=0.51;ReadPosRankSum=8.481;SB=-2.373e+03	GT:AD:DP:GQ:PL	1/1:28,972:1000:69:544,69,0
chrXII	460505	.	G	A	16614.01	filter	AC=2;AF=1.00;AN=2;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=162.5422;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=16.61;SB=-6.931e+03	GT:AD:DP:GQ:PL	1/1:0,973:1000:99:16614,1798,0
chrXII	460694	.	A	G	6078.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.405;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=17.8083;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=328;MQRankSum=1.993;QD=6.08;ReadPosRankSum=0.858;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:8,955:1000:99:6078,687,0
chrXII	475971	.	T	C	98.64	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.39;MQ0=3;MQRankSum=0.742;QD=9.86;ReadPosRankSum=0.742;SB=0.547	GT:AD:DP:GQ:PL	0/1:4,6:10:5:128,0,5
chrXII	475985	.	T	G	93.64	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=14;MQRankSum=0.742;QD=4.46;ReadPosRankSum=0.742;SB=0.547	GT:AD:DP:GQ:PL	0/1:15,6:21:5:123,0,5
chrXII	481898	.	C	A	45.31	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=9;Dels=0.00;FS=11.761;HaplotypeScore=3.9512;MLEAC=1;MLEAF=0.500;MQ=23.91;MQ0=2;MQRankSum=-1.380;QD=5.03;ReadPosRankSum=-0.720;SB=16.66	GT:AD:DP:GQ:PL	1/1:2,4:9:9:77,9,0
chrXII	481902	.	G	T	15.17	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=7;Dels=0.00;FS=11.761;HaplotypeScore=3.9512;MLEAC=1;MLEAF=0.500;MQ=27.11;MQ0=0;MQRankSum=1.380;QD=2.17;ReadPosRankSum=0.000;SB=15.73	GT:AD:DP:GQ:PL	1/1:4,2:7:6:46,6,0
chrXII	495002	.	C	G	1898	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.43;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1931,210,0
chrXII	509663	.	A	G	1613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.7233;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=0.688;QD=21.80;ReadPosRankSum=1.685;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1646,174,0
chrXII	511957	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1501,156,0
chrXII	512394	.	T	C	957	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.26;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:99:990,105,0
chrXII	513040	.	A	G	489	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.149;QD=17.46;ReadPosRankSum=2.748;SB=-6.550e-03	GT:AD:DP:GQ:PL	1/1:3,25:28:54:522,54,0
chrXII	513649	.	C	T	806	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=16.45;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:839,90,0
chrXII	513651	.	T	C	816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=0.258;QD=17.36;ReadPosRankSum=1.659;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:90:849,90,0
chrXII	513765	.	G	C	1542	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.52;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1575,168,0
chrXII	514236	.	T	C	911	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=2.739;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.328;QD=14.23;ReadPosRankSum=2.334;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:944,102,0
chrXII	514237	.	A	C	915	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=64;Dels=0.00;FS=9.014;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=0.675;QD=14.30;ReadPosRankSum=2.373;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:948,102,0
chrXII	514238	.	A	T	942	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=15.19;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:975,102,0
chrXII	514581	.	G	C	732	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.77;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:84:765,84,0
chrXII	514832	.	G	A	879	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=17.24;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:912,99,0
chrXII	514922	.	G	A	1865	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.22;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1898,198,0
chrXII	514979	.	A	G	567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=48;Dels=0.00;FS=4.586;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.732;QD=11.81;ReadPosRankSum=1.657;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:69:600,69,0
chrXII	515081	.	C	A	1211	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.3259;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.63;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1244,138,0
chrXII	515236	.	C	G	1838	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.88;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1871,201,0
chrXII	515306	.	T	C	1572	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.0093;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.24;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1605,171,0
chrXII	515450	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.75;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1278,135,0
chrXII	515516	.	T	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.1725;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=20.89;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1621,168,0
chrXII	515570	.	T	C	1929	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-0.264;QD=20.74;ReadPosRankSum=1.694;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1962,210,0
chrXII	516197	.	G	A	2155	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.68;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2188,225,0
chrXII	516236	.	G	T	2068	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.77;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2101,222,0
chrXII	517114	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.91;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1319,141,0
chrXII	517338	.	A	G	2379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.0964;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.074;QD=20.16;ReadPosRankSum=2.174;SB=-1.420e+03	GT:AD:DP:GQ:PL	1/1:2,115:118:99:2412,258,0
chrXII	517690	.	G	A	2482	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.0781;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.03;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,115:118:99:2515,258,0
chrXII	517747	.	T	C	2991	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.2312;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.83;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:3024,324,0
chrXII	518074	.	G	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.95;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1511,162,0
chrXII	518152	.	T	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.65;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1703,174,0
chrXII	518395	.	T	C	1572	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.12;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1605,171,0
chrXII	518452	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=72;Dels=0.00;FS=5.898;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.990;QD=22.24;ReadPosRankSum=1.683;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1634,180,0
chrXII	518617	.	A	G	1423	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.24;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1456,156,0
chrXII	519157	.	A	T	1653	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=23.61;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1686,174,0
chrXII	519163	.	G	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=22.55;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1634,174,0
chrXII	519646	.	A	C	2268	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.14;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2301,246,0
chrXII	519666	.	A	G	1980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=7.614;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.284;QD=21.29;ReadPosRankSum=2.370;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2013,216,0
chrXII	520061	.	C	A	1576	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.30;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1609,168,0
chrXII	520774	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.01;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1434,156,0
chrXII	520933	.	T	C	1748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=7.325;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.084;QD=20.81;ReadPosRankSum=2.361;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:2,81:84:99:1781,192,0
chrXII	522439	.	C	T	803	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=24.33;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:87:836,87,0
chrXII	522479	.	G	C	445	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=15.34;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:51:478,51,0
chrXII	522493	.	G	C	453	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=12.94;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:51:486,51,0
chrXII	522494	.	T	C	458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=4.658;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;MQRankSum=-0.091;QD=12.05;ReadPosRankSum=1.368;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:51:491,51,0
chrXII	522592	.	C	T	2674	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.89;SB=-1.626e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2707,285,0
chrXII	522608	.	A	G	2746	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=144;Dels=0.00;FS=7.159;HaplotypeScore=135.5663;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;MQRankSum=-1.831;QD=19.07;ReadPosRankSum=2.415;SB=-1.679e+03	GT:AD:DP:GQ:PL	1/1:2,141:144:99:2779,297,0
chrXII	522829	.	A	C	1064	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.71;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1097,117,0
chrXII	522914	.	G	C	2076	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.35;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2109,228,0
chrXII	523574	.	T	C	1896	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.97;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1929,204,0
chrXII	523959	.	C	T	1207	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.18;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1240,126,0
chrXII	524661	.	C	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=19.71;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1176,129,0
chrXII	524691	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=7.9047;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=21.78;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1427,153,0
chrXII	525410	.	G	A	2065	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.97;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2098,216,0
chrXII	525539	.	G	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1221,129,0
chrXII	526478	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.78;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1354,138,0
chrXII	526817	.	C	T	1235	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.30;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1268,129,0
chrXII	526820	.	C	T	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=-0.682;QD=16.58;ReadPosRankSum=1.680;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:95:1127,95,0
chrXII	527111	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.03;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1622,171,0
chrXII	527310	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.05;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1485,159,0
chrXII	527681	.	C	A	2264	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=18.71;SB=-1.503e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2297,237,0
chrXII	527685	.	A	G	2466	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=124;Dels=0.00;FS=3.300;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.391;QD=19.89;ReadPosRankSum=1.704;SB=-1.540e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2499,273,0
chrXII	527799	.	A	G	3569.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=143;Dels=0.00;FS=7.082;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.206;QD=24.96;ReadPosRankSum=1.684;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:1,142:143:99:3569,375,0
chrXII	527822	.	A	G	3314.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.67;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3314,360,0
chrXII	528508	.	C	T	1572	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.46;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1605,165,0
chrXII	528722	.	C	T	1111	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.20;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1144,120,0
chrXII	528749	.	T	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.16;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1197,129,0
chrXII	528902	.	C	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.61;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1190,123,0
chrXII	528926	.	C	T	1140	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.32;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1173,123,0
chrXII	529055	.	G	A	1348	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.65;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1381,141,0
chrXII	529097	.	A	G	1382	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.559;QD=23.03;ReadPosRankSum=1.559;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1415,150,0
chrXII	529568	.	T	C	951	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;MQRankSum=0.425;QD=17.94;ReadPosRankSum=1.667;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:984,105,0
chrXII	529574	.	G	A	957	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=17.40;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:990,111,0
chrXII	529586	.	A	G	842	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.51;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:875,93,0
chrXII	529715	.	C	T	1250	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.84;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1283,138,0
chrXII	529799	.	T	C	1194	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.71;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1227,132,0
chrXII	530081	.	C	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.06;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1261,135,0
chrXII	530090	.	A	G	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=1.010;QD=16.97;ReadPosRankSum=1.684;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1255,132,0
chrXII	530377	.	G	A	2099	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.60;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2132,219,0
chrXII	530760	.	G	C	1350	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.00;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1383,144,0
chrXII	531598	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.40;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1444,147,0
chrXII	531655	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=21.44;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1491,162,0
chrXII	531661	.	C	G	1343	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=20.04;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1376,147,0
chrXII	531685	.	G	A	1061	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=17.98;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1094,111,0
chrXII	531697	.	G	A	936	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=17.33;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:969,102,0
chrXII	531799	.	A	G	1552	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.82;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1585,165,0
chrXII	531825	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.59;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1523,162,0
chrXII	532084	.	C	T	1384	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.62;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1417,153,0
chrXII	532381	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-0.468;QD=16.57;ReadPosRankSum=1.685;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1259,135,0
chrXII	532384	.	G	A	1190	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=16.76;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1223,132,0
chrXII	532399	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=17.28;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1433,144,0
chrXII	532555	.	C	G	2138	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2171,234,0
chrXII	532747	.	A	G	938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.157;DP=47;Dels=0.00;FS=11.448;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.121;QD=19.96;ReadPosRankSum=3.606;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:5,42:47:99:971,105,0
chrXII	532984	.	A	G	1598	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.365;QD=21.03;ReadPosRankSum=1.641;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1631,177,0
chrXII	533081	.	A	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.02;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1222,129,0
chrXII	533245	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.49;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1713,180,0
chrXII	533365	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=24.45;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1769,192,0
chrXII	533966	.	C	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.59;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1598,165,0
chrXII	534322	.	A	G	988	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.37;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1021,111,0
chrXII	534832	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.97;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1711,186,0
chrXII	535113	.	T	C	1146	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.46;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1179,129,0
chrXII	535290	.	G	A	953	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.69;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:986,102,0
chrXII	535517	.	C	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.37;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1721,177,0
chrXII	535603	.	C	T	2172	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.39;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2205,234,0
chrXII	535624	.	G	A	1728	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.4534;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.42;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1761,183,0
chrXII	535696	.	A	G	1731	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.39;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1764,192,0
chrXII	535711	.	C	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=21.35;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1613,162,0
chrXII	535724	.	T	C	1232	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7791;MLEAC=2;MLEAF=1.00;MQ=46.19;MQ0=0;QD=17.60;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1265,132,0
chrXII	535744	.	G	A	657	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.22;MQ0=0;QD=11.33;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:72:690,72,0
chrXII	535753	.	G	A	567	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=7.99;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:63:600,63,0
chrXII	535945	.	A	G	2235	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.69;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2268,237,0
chrXII	535963	.	G	A	1915	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.8574;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.77;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1948,201,0
chrXII	536245	.	T	A	2202	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.94;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2235,237,0
chrXII	536332	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.55;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1421,153,0
chrXII	536548	.	T	C	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.6097;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.050;QD=20.56;ReadPosRankSum=1.680;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1390,150,0
chrXII	536776	.	C	T	3337.01	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.87;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,128:129:99:3337,351,0
chrXII	536833	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=20.08;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1037,114,0
chrXII	536867	.	C	T	768	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=20.76;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:801,84,0
chrXII	536876	.	T	A	814	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=25.1292;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=18.93;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:847,87,0
chrXII	537122	.	A	G	1351	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.44;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1384,150,0
chrXII	537160	.	A	T	931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=4.702;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=1;MQRankSum=-1.509;QD=14.78;ReadPosRankSum=1.676;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:964,102,0
chrXII	537219	.	G	A	545	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=50.2835;MLEAC=2;MLEAF=1.00;MQ=31.28;MQ0=1;QD=10.09;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:66:578,66,0
chrXII	537226	.	C	T	537	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.20;MQ0=1;QD=8.14;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:60:570,60,0
chrXII	537234	.	A	C	733	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=10.47;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:84:766,84,0
chrXII	537237	.	T	C	888	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.58;MQ0=0;MQRankSum=-2.286;QD=11.84;ReadPosRankSum=2.384;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:921,99,0
chrXII	537242	.	A	C	987	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=12.34;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1020,111,0
chrXII	537994	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.3210;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.636;QD=21.93;ReadPosRankSum=-0.289;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1634,174,0
chrXII	538121	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.09;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1005,111,0
chrXII	538246	.	A	G	882	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.62;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:915,96,0
chrXII	538270	.	G	A	758	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.66;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:791,84,0
chrXII	538303	.	G	C	1016	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.63;SB=-2.340e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1049,111,0
chrXII	538336	.	G	A	947	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.02;SB=-1.490e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:980,102,0
chrXII	538387	.	A	G	1197	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.17;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1230,126,0
chrXII	538477	.	A	C	374	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=14.38;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:45:407,45,0
chrXII	538592	.	C	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.12;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1440,156,0
chrXII	538633	.	A	G	1542	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.14;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1575,168,0
chrXII	539704	.	C	T	558	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.25;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:60:591,60,0
chrXII	539764	.	C	T	1002	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.32;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1035,105,0
chrXII	539905	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.78;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1272,135,0
chrXII	540219	.	A	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.12;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1258,135,0
chrXII	540587	.	A	C	1575	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1679;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=18.98;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1608,171,0
chrXII	541018	.	G	C	2194	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.0084;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.77;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2227,240,0
chrXII	541031	.	T	C	2158	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.310;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.808;QD=20.36;ReadPosRankSum=1.666;SB=-1.315e+03	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2191,234,0
chrXII	541062	.	T	C	2587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=123;Dels=0.00;FS=3.046;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.417;QD=21.03;ReadPosRankSum=1.703;SB=-1.631e+03	GT:AD:DP:GQ:PL	1/1:1,120:123:99:2620,279,0
chrXII	541268	.	G	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.83;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1085,117,0
chrXII	541310	.	A	G	890	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=17.12;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:923,99,0
chrXII	541316	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=16.59;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:962,102,0
chrXII	541508	.	A	G	2321	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.21;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2354,246,0
chrXII	541624	.	T	C	1545	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.72;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1578,168,0
chrXII	541642	.	C	A	1459	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=21.46;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1492,159,0
chrXII	541643	.	T	G	1498	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=22.03;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1531,162,0
chrXII	541663	.	G	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=20.02;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1194,132,0
chrXII	541726	.	C	G	531	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=15.17;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,33:35:60:564,60,0
chrXII	541773	.	C	T	928	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:961,99,0
chrXII	542257	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.15;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1121,117,0
chrXII	542270	.	T	C	837	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=20.41;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:870,93,0
chrXII	542516	.	T	C	1586	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.331;QD=22.99;ReadPosRankSum=1.682;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1619,177,0
chrXII	543095	.	G	T	40.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;DP=28;Dels=0.00;FS=31.410;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=55.91;MQ0=0;MQRankSum=0.675;QD=1.43;ReadPosRankSum=-3.270;SB=0.528	GT:AD:DP:GQ:PL	0/1:16,12:28:70:70,0,137
chrXII	543100	.	A	G	227.01	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=10.32;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:27:260,27,0
chrXII	543240	.	T	C	1159	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.1128;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.32;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1192,126,0
chrXII	543312	.	A	G	1476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=3.010;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.498;QD=19.95;ReadPosRankSum=1.685;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1509,165,0
chrXII	543394	.	C	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.76;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1883,201,0
chrXII	543480	.	G	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=25.36;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1377,144,0
chrXII	543538	.	T	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=42.5264;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=23.64;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1144,123,0
chrXII	543608	.	C	A	1012	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=21.08;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1045,114,0
chrXII	543633	.	A	C	864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;MQRankSum=0.995;QD=18.38;ReadPosRankSum=1.659;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:96:897,96,0
chrXII	543641	.	A	T	839	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=19.07;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:872,93,0
chrXII	543729	.	A	G	602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.062;QD=19.42;ReadPosRankSum=1.621;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:69:635,69,0
chrXII	544057	.	T	C	1116	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=22.78;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1149,123,0
chrXII	544213	.	A	G	1984	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.45;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2017,213,0
chrXII	544246	.	G	A	2154	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5184;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2187,225,0
chrXII	544316	.	A	G	2029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=92;Dels=0.00;FS=3.033;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=0.420;QD=22.05;ReadPosRankSum=2.396;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2062,222,0
chrXII	544762	.	G	A	1662	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=16.46;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1695,186,0
chrXII	544765	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=15.73;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1622,171,0
chrXII	544827	.	A	C	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=103;Dels=0.00;FS=3.316;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.420;QD=18.83;ReadPosRankSum=1.698;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1973,210,0
chrXII	545567	.	A	C	2162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.460;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=9.9453;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.304;QD=24.29;ReadPosRankSum=1.693;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2195,231,0
chrXII	545601	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.67;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1680,174,0
chrXII	545602	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.15;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1544,171,0
chrXII	545673	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=18.78;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1423,153,0
chrXII	546249	.	A	C	1619	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1652,174,0
chrXII	546343	.	G	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=25.78;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1425,144,0
chrXII	546382	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=25.36;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1377,150,0
chrXII	546637	.	T	C	1843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.782;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.927;QD=21.43;ReadPosRankSum=1.652;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1876,201,0
chrXII	547572	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.827;QD=19.57;ReadPosRankSum=2.908;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1520,159,0
chrXII	548046	.	T	G	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.100;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.884;QD=22.47;ReadPosRankSum=1.591;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1134,120,0
chrXII	548327	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.725;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.5862;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=2.254;QD=19.28;ReadPosRankSum=2.293;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:2,61:67:99:1325,122,0
chrXII	548452	.	A	G	942	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.77;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:975,105,0
chrXII	548551	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.5307;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.59;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1169,120,0
chrXII	548742	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.79;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1446,150,0
chrXII	548879	.	A	T	1252	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=8.071;HaplotypeScore=2.5740;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.885;QD=20.87;ReadPosRankSum=2.368;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1285,135,0
chrXII	548969	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.80;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1744,180,0
chrXII	549297	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.147;QD=21.73;ReadPosRankSum=0.984;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:2,57:60:99:1337,144,0
chrXII	549423	.	A	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.25;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1592,165,0
chrXII	549562	.	A	G	1191	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=16.09;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1224,132,0
chrXII	549589	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4699;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.82;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1386,150,0
chrXII	549760	.	G	A	2106	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=20.85;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2139,228,0
chrXII	549838	.	C	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.1445;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=21.13;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1787,192,0
chrXII	550771	.	C	T	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;DP=99;Dels=0.00;FS=3.102;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.480;QD=19.43;ReadPosRankSum=-0.469;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:1,96:99:99:1957,185,0
chrXII	550837	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.17;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1614,168,0
chrXII	551064	.	T	C	1174	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=17.79;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1207,129,0
chrXII	551145	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.40;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1814,186,0
chrXII	551535	.	C	T	1832	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.55;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1865,192,0
chrXII	551847	.	C	T	761	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=17.70;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:794,81,0
chrXII	552056	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.16;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1395,153,0
chrXII	552291	.	C	T	1853	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.80;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1886,198,0
chrXII	552323	.	T	G	1893	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.9325;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.51;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1926,216,0
chrXII	552649	.	C	G	2959	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=8.9587;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.60;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,144:151:99:2992,321,0
chrXII	552790	.	C	T	1346	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.51;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1379,147,0
chrXII	552829	.	A	T	1205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.653;QD=19.75;ReadPosRankSum=1.619;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1238,126,0
chrXII	552832	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.61;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1249,126,0
chrXII	553360	.	C	G	1781	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.74;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1814,195,0
chrXII	554204	.	C	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.05;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1671,174,0
chrXII	555828	.	C	T	1316	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.89;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1349,138,0
chrXII	555919	.	A	G	1655	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.78;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1688,180,0
chrXII	555993	.	A	G	2179	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.01;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2212,240,0
chrXII	556056	.	C	T	2869	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=12.6969;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.59;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,124:127:99:2902,303,0
chrXII	556347	.	G	A	385	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=6.21;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:48:418,48,0
chrXII	556350	.	G	A	472	filter	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=7.37;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,64:64:57:505,57,0
chrXII	556359	.	G	A	579	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=8.64;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,67:67:66:612,66,0
chrXII	556879	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1224,129,0
chrXII	557356	.	A	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.84;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1824,198,0
chrXII	557420	.	A	G	1933	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=6.606;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.319;QD=22.74;ReadPosRankSum=2.392;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1966,213,0
chrXII	557979	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.98;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1484,150,0
chrXII	558134	.	C	T	2405	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6857;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.79;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2438,258,0
chrXII	558341	.	T	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.18;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1163,123,0
chrXII	558665	.	C	T	1524	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.88;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1557,165,0
chrXII	558773	.	T	C	908	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.64;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:941,99,0
chrXII	558945	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.93;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1524,159,0
chrXII	559405	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.69;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1357,144,0
chrXII	559511	.	C	T	2094	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.94;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2127,231,0
chrXII	559835	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=6.226;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.513;QD=20.51;ReadPosRankSum=2.298;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1366,150,0
chrXII	559898	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1297;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.93;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,97:100:99:1826,195,0
chrXII	560519	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.89;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1161,120,0
chrXII	560612	.	G	C	2105	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.84;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2138,225,0
chrXII	561785	.	T	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5266;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.23;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1239,132,0
chrXII	561959	.	T	G	2627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.6267;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.017;QD=25.50;ReadPosRankSum=-0.219;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2660,285,0
chrXII	562070	.	T	C	1797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=3.066;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.243;QD=23.64;ReadPosRankSum=2.255;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1830,192,0
chrXII	562270	.	C	T	3278.01	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=25.02;SB=-1.685e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:3278,337,0
chrXII	562305	.	C	G	2615	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.79;SB=-1.308e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2648,279,0
chrXII	563186	.	T	C	1148	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;QD=20.87;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1181,126,0
chrXII	563207	.	T	C	677	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=17.82;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:75:710,75,0
chrXII	563406	.	A	G	854	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=17.43;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:887,96,0
chrXII	563663	.	T	A	628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=-0.839;QD=20.26;ReadPosRankSum=1.621;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:1,30:31:66:661,66,0
chrXII	563686	.	T	C	761	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.6332;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.02;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:81:794,81,0
chrXII	563770	.	G	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1209,135,0
chrXII	564068	.	T	C	1861	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.86;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1894,204,0
chrXII	564107	.	A	T	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.572;QD=21.82;ReadPosRankSum=2.391;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1866,195,0
chrXII	564719	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=21.07;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1571,162,0
chrXII	564747	.	A	G	1784	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.18;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1817,192,0
chrXII	564759	.	G	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=18.77;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1647,180,0
chrXII	564824	.	G	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.25;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1479,153,0
chrXII	564860	.	T	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.90;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1754,186,0
chrXII	565274	.	G	T	1591	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.40;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1624,168,0
chrXII	565436	.	A	G	1732	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=0.066;QD=21.92;ReadPosRankSum=1.644;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1765,192,0
chrXII	565496	.	A	G	1776	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=19.52;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1809,189,0
chrXII	565505	.	C	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.22;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1600,174,0
chrXII	565625	.	A	G	937	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.52;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:970,102,0
chrXII	565688	.	G	A	1433	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.77;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1466,150,0
chrXII	565934	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=21.98;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1835,186,0
chrXII	566015	.	T	C	1416	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=18.15;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1449,159,0
chrXII	566021	.	G	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=16.81;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1294,138,0
chrXII	566237	.	G	A	2100	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.58;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2133,216,0
chrXII	566307	.	A	G	3055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=123;Dels=0.00;FS=6.273;HaplotypeScore=5.9818;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.370;QD=24.84;ReadPosRankSum=2.410;SB=-1.616e+03	GT:AD:DP:GQ:PL	1/1:2,121:123:99:3088,327,0
chrXII	566515	.	G	A	2776	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.02;FS=0.000;HaplotypeScore=8.0074;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.75;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2809,297,0
chrXII	566615	.	T	C	2083	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1156;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.40;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2116,228,0
chrXII	566882	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.83;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1321,138,0
chrXII	567365	.	C	T	872	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=16.15;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:93:905,93,0
chrXII	567994	.	C	T	2172	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.09;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2205,228,0
chrXII	568114	.	A	T	1301	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.65;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1334,141,0
chrXII	568179	.	T	A	1010	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.96;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1043,111,0
chrXII	568917	.	T	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.33;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1569,171,0
chrXII	569539	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=20.94;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1708,180,0
chrXII	569709	.	C	T	2036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.417;QD=23.14;ReadPosRankSum=-0.197;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2069,195,0
chrXII	570142	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.22;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1559,159,0
chrXII	570914	.	G	A	1175	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.36;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1208,126,0
chrXII	571412	.	C	T	1845	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.23;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1878,192,0
chrXII	572164	.	T	C	2083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=88;Dels=0.00;FS=2.454;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.873;QD=23.67;ReadPosRankSum=2.919;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:3,84:88:99:2116,225,0
chrXII	572294	.	G	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=17.37;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1214,132,0
chrXII	572946	.	T	C	948	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.17;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:981,105,0
chrXII	572975	.	A	G	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.389;QD=19.94;ReadPosRankSum=1.662;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1010,111,0
chrXII	573671	.	A	G	1127	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.34;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1160,126,0
chrXII	573804	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=74;Dels=0.00;FS=6.081;HaplotypeScore=5.9749;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.050;QD=19.05;ReadPosRankSum=2.383;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1443,153,0
chrXII	574034	.	C	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.66;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1810,195,0
chrXII	574408	.	G	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.18;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1789,183,0
chrXII	574584	.	C	G	1757	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.69;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1790,189,0
chrXII	574714	.	A	G	1893	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=91;Dels=0.00;FS=4.442;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.954;QD=20.80;ReadPosRankSum=1.693;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,88:91:99:1926,210,0
chrXII	574726	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9348;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.78;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2106,219,0
chrXII	574950	.	T	C	2082	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.63;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2115,225,0
chrXII	575257	.	C	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.50;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1158,120,0
chrXII	575473	.	T	G	1328	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.13;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1361,147,0
chrXII	576016	.	G	A	1126	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.98;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1159,120,0
chrXII	579749	.	T	G	1707	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4479;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.82;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1740,186,0
chrXII	580463	.	C	T	2659	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.92;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2692,279,0
chrXII	581946	.	G	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=26.21;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1265,129,0
chrXII	582391	.	A	G	2526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.395;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.352;QD=21.05;ReadPosRankSum=1.673;SB=-1.425e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2559,267,0
chrXII	585678	.	G	A	2026	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.29;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2059,213,0
chrXII	585709	.	A	T	1625	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=7.7889;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.264;QD=21.67;ReadPosRankSum=1.685;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1658,171,0
chrXII	586255	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.133;QD=20.48;ReadPosRankSum=1.679;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1385,147,0
chrXII	589339	.	T	C	2220	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9340;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.87;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2253,240,0
chrXII	589563	.	A	G	2708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=126;Dels=0.02;FS=0.000;HaplotypeScore=6.3786;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.338;QD=21.49;ReadPosRankSum=1.676;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2741,294,0
chrXII	591568	.	G	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1156,120,0
chrXII	592397	.	G	A	2030	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2063,213,0
chrXII	599059	.	C	G	88.18	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.12;MQ0=4;MQRankSum=0.751;QD=6.78;ReadPosRankSum=-0.751;SB=0.462	GT:AD:DP:GQ:PL	0/1:5,8:13:11:118,0,11
chrXII	599061	.	C	T	100.18	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.81;MQ0=4;MQRankSum=1.302;QD=5.01;ReadPosRankSum=-1.735;SB=-2.973e+00	GT:AD:DP:GQ:PL	0/1:5,15:20:11:130,0,11
chrXII	599062	.	A	G	92.14	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=35.50;MQ0=4;MQRankSum=1.302;QD=4.39;ReadPosRankSum=-1.735;SB=-2.885e+00	GT:AD:DP:GQ:PL	0/1:5,15:21:12:122,0,12
chrXII	599482	.	G	T	3090	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.23;SB=-1.750e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3123,330,0
chrXII	601489	.	A	G	1238	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7911;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.72;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1271,135,0
chrXII	604895	.	A	C	2676	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.4086;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-1.256e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2709,291,0
chrXII	605256	.	G	A	2405	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.12;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2438,255,0
chrXII	605537	.	C	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.24;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1683,177,0
chrXII	606972	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.93;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1239,132,0
chrXII	607075	.	C	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=18.74;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1270,138,0
chrXII	607090	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=7.206;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;MQRankSum=-2.187;QD=17.87;ReadPosRankSum=2.384;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1373,147,0
chrXII	607128	.	G	A	2239	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=114.6516;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=15.88;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:2272,240,0
chrXII	607134	.	T	C	2173	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=113.8630;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=2;QD=13.84;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,157:157:99:2206,234,0
chrXII	607171	.	G	A	2682	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=48.98;MQ0=3;QD=15.78;SB=-1.609e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:2715,282,0
chrXII	607200	.	G	A	2341	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=3;QD=16.26;SB=-1.663e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:2374,255,0
chrXII	607344	.	C	T	1007	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=17.98;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1040,108,0
chrXII	607531	.	C	T	1087	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.74;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1120,117,0
chrXII	607614	.	G	A	956	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.0875;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=15.93;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:989,102,0
chrXII	607637	.	G	A	975	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=17.41;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1008,102,0
chrXII	607680	.	A	G	773	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-0.192;QD=14.31;ReadPosRankSum=1.604;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:87:806,87,0
chrXII	607707	.	A	G	879	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.19;MQ0=0;QD=16.28;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:912,99,0
chrXII	607722	.	C	T	839	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=13.75;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:90:872,90,0
chrXII	607737	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=43.91;MQ0=0;QD=13.39;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:917,99,0
chrXII	607779	.	T	C	686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=7.0987;MLEAC=2;MLEAF=1.00;MQ=41.56;MQ0=0;MQRankSum=-0.952;QD=9.66;ReadPosRankSum=1.683;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:78:719,78,0
chrXII	607790	.	T	C	587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=65;Dels=0.00;FS=4.569;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;MQRankSum=1.512;QD=9.03;ReadPosRankSum=1.677;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:66:620,66,0
chrXII	607791	.	T	C	571	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.80;MQ0=0;QD=9.06;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:66:604,66,0
chrXII	607814	.	A	G	630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=56;Dels=0.00;FS=6.047;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=-1.427;QD=11.25;ReadPosRankSum=2.872;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:3,52:56:72:663,72,0
chrXII	607922	.	C	T	699	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=16.26;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:732,84,0
chrXII	607923	.	T	C	699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=0.604;QD=16.26;ReadPosRankSum=1.491;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:84:732,84,0
chrXII	607998	.	T	G	1534	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=22.56;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1567,171,0
chrXII	608022	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=22.24;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1412,150,0
chrXII	608136	.	G	A	1077	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=23.41;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1110,117,0
chrXII	608154	.	C	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=22.70;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1077,114,0
chrXII	608155	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=22.13;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1073,114,0
chrXII	608472	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.84;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1487,156,0
chrXII	608666	.	C	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=18.54;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1071,117,0
chrXII	608673	.	C	T	1066	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=19.04;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1099,120,0
chrXII	608685	.	T	C	836	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.75;MQ0=0;QD=14.93;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:869,90,0
chrXII	608709	.	A	G	703	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=13.78;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:78:736,78,0
chrXII	608724	.	C	T	664	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=11.45;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:75:697,75,0
chrXII	608748	.	G	A	776	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=12.93;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:84:809,84,0
chrXII	609039	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.65;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1279,135,0
chrXII	609087	.	G	A	1728	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=22.74;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1761,180,0
chrXII	609126	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.98;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1835,189,0
chrXII	609213	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=25.00;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1708,183,0
chrXII	609308	.	G	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.53;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1475,153,0
chrXII	609380	.	G	A	2431	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=25.59;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2464,255,0
chrXII	609488	.	A	T	1954	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.962;QD=21.71;ReadPosRankSum=1.694;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1987,204,0
chrXII	609555	.	A	G	1587	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.67;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1620,171,0
chrXII	609572	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-0.192;QD=19.74;ReadPosRankSum=1.684;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1454,153,0
chrXII	609589	.	G	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.55;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1595,165,0
chrXII	609678	.	A	T	1625	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.12;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1658,174,0
chrXII	609688	.	C	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.82;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1746,183,0
chrXII	609791	.	G	A	2349	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.73;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,96:99:99:2382,258,0
chrXII	610061	.	T	C	2050	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=94;Dels=0.00;FS=3.358;HaplotypeScore=7.0938;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.542;QD=21.81;ReadPosRankSum=1.656;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:1,90:94:99:2083,225,0
chrXII	610215	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.591;QD=20.44;ReadPosRankSum=1.690;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1709,183,0
chrXII	611179	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.9545;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.58;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1070,117,0
chrXII	616887	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.10;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1078,117,0
chrXII	617208	.	G	T	1412	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.77;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1445,150,0
chrXII	617372	.	A	T	2026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.858;QD=18.93;ReadPosRankSum=1.603;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2059,210,0
chrXII	617379	.	C	G	2328	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.56;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2361,249,0
chrXII	617706	.	A	G	1811	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.36;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1844,198,0
chrXII	617865	.	G	A	1950	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=89;Dels=0.00;FS=3.696;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.993;QD=21.91;ReadPosRankSum=0.331;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1983,213,0
chrXII	618108	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=25.55;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1515,153,0
chrXII	618279	.	T	C	1853	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.38;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1886,198,0
chrXII	619023	.	T	C	695	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.55;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:78:728,78,0
chrXII	619242	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1545,165,0
chrXII	619341	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.03;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1589,168,0
chrXII	619476	.	T	C	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.080;QD=22.97;ReadPosRankSum=1.572;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1526,165,0
chrXII	619650	.	A	G	1876	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7300;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1909,201,0
chrXII	619731	.	T	C	1713	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=20.39;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1746,186,0
chrXII	619752	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.13;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,80:84:99:1556,159,0
chrXII	619971	.	T	G	2428	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.48;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,105:108:99:2461,270,0
chrXII	620740	.	T	C	1570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=5.315;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.958;QD=18.47;ReadPosRankSum=1.610;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1603,171,0
chrXII	621336	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.14;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1216,123,0
chrXII	621513	.	T	A	1469	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.48;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1502,153,0
chrXII	621546	.	C	T	1135	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.65;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1168,123,0
chrXII	621672	.	G	T	1127	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.43;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1160,120,0
chrXII	621897	.	G	A	985	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:99:1018,105,0
chrXII	622068	.	T	C	1178	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.65;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1211,129,0
chrXII	622344	.	C	T	1010	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.70;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1043,108,0
chrXII	622500	.	C	T	1473	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.66;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1506,153,0
chrXII	622806	.	T	C	1456	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1489,156,0
chrXII	622969	.	A	G	2627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=104;Dels=0.00;FS=8.819;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.769;QD=25.26;ReadPosRankSum=2.355;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:2,102:104:99:2660,282,0
chrXII	622999	.	A	G	2337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=99;Dels=0.00;FS=8.389;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.455;QD=23.61;ReadPosRankSum=2.400;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:2370,258,0
chrXII	623059	.	A	G	1907	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.26;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1940,213,0
chrXII	623491	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.2212;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.20;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1972,207,0
chrXII	623494	.	G	A	2006	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.4304;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.06;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2039,213,0
chrXII	623830	.	C	G	2411	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.5143;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.53;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2444,258,0
chrXII	624955	.	T	C	910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.010;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.205;QD=19.78;ReadPosRankSum=1.657;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:943,102,0
chrXII	625037	.	T	C	1038	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=14.83;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1071,117,0
chrXII	625055	.	A	G	686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=71;Dels=0.00;FS=16.427;HaplotypeScore=35.9334;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;MQRankSum=-0.963;QD=9.66;ReadPosRankSum=3.619;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:8,63:71:78:719,78,0
chrXII	625450	.	A	G	1473	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.99;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1506,162,0
chrXII	625558	.	T	G	2362	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.385e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2395,258,0
chrXII	626422	.	T	A	456	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=53;Dels=0.00;FS=6.983;HaplotypeScore=7.4187;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=-0.490;QD=8.60;ReadPosRankSum=2.310;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:2,51:53:54:489,54,0
chrXII	627007	.	T	C	1836	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=24.48;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1869,195,0
chrXII	627201	.	G	C	1839	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.58;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1872,201,0
chrXII	627274	.	T	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0942;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.36;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1576,162,0
chrXII	627361	.	C	T	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=78;Dels=0.00;FS=3.550;HaplotypeScore=5.1654;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=1.687;QD=18.37;ReadPosRankSum=1.597;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1466,150,0
chrXII	627370	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=17.20;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1392,153,0
chrXII	627543	.	T	C	1879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.112;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.524;QD=21.85;ReadPosRankSum=1.692;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1912,201,0
chrXII	628215	.	G	T	913	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=21.23;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:99:946,105,0
chrXII	628271	.	T	C	781	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.11;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:84:814,84,0
chrXII	628274	.	G	C	792	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.54;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:87:825,87,0
chrXII	628349	.	G	T	286	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=8.41;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:33:319,33,0
chrXII	628361	.	A	T	320	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=0;QD=8.42;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:36:353,36,0
chrXII	628365	.	C	A	347	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=39.65;MQ0=0;QD=9.13;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:39:380,39,0
chrXII	628424	.	A	G	554	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.77;MQ0=0;QD=19.79;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:60:587,60,0
chrXII	629441	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.54;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1363,144,0
chrXII	629690	.	T	C	1741	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.73;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1774,189,0
chrXII	629914	.	A	G	1221	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.80;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1254,135,0
chrXII	629974	.	A	G	1023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.8724;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.662;QD=20.88;ReadPosRankSum=1.662;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1056,114,0
chrXII	630048	.	G	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.2865;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.55;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1533,159,0
chrXII	630314	.	A	G	1392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=62;Dels=0.00;FS=3.229;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.710;QD=22.45;ReadPosRankSum=1.675;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1425,150,0
chrXII	630870	.	C	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.68;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1450,147,0
chrXII	630901	.	G	A	1297	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=18.27;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1330,138,0
chrXII	630917	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=18.67;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1340,138,0
chrXII	630958	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=15.55;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1059,114,0
chrXII	631177	.	G	A	1939	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.36;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1972,204,0
chrXII	631423	.	A	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.23;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1434,153,0
chrXII	632067	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=16.97;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1357,144,0
chrXII	632381	.	A	C	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1719;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=1.386;QD=18.91;ReadPosRankSum=1.633;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1357,147,0
chrXII	632671	.	G	A	1140	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.27;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1173,123,0
chrXII	632910	.	T	C	880	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.72;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:913,99,0
chrXII	632986	.	A	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.93;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1091,120,0
chrXII	633127	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=18.01;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1600,171,0
chrXII	633130	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=18.08;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1606,168,0
chrXII	633149	.	C	T	1507	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=16.20;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1540,162,0
chrXII	633163	.	G	A	1725	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;QD=18.55;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1758,183,0
chrXII	633190	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=15.01;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1384,150,0
chrXII	633199	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=15.87;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1445,150,0
chrXII	633207	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=17.02;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1446,153,0
chrXII	633302	.	T	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=19.51;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1223,132,0
chrXII	633316	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.77;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1487,156,0
chrXII	633347	.	G	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.51;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1477,150,0
chrXII	633355	.	T	C	1260	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=15.95;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1293,141,0
chrXII	633477	.	A	G	1782	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.4010;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=16.35;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:1815,195,0
chrXII	633782	.	C	T	1910	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5151;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.87;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1943,201,0
chrXII	634127	.	T	C	1749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=84;Dels=0.00;FS=8.197;HaplotypeScore=5.9369;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.306;QD=20.82;ReadPosRankSum=2.391;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1782,189,0
chrXII	634189	.	G	C	2653	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.51;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2686,285,0
chrXII	634219	.	C	T	2160	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4806;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=25.41;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2193,225,0
chrXII	634488	.	G	A	1579	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.05;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1612,168,0
chrXII	634506	.	A	C	1471	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.6868;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.88;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1504,156,0
chrXII	634577	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.4082;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.89;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1224,129,0
chrXII	634698	.	T	C	1047	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.75;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1080,114,0
chrXII	634813	.	A	C	1997	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=92;Dels=0.00;FS=5.374;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.322;QD=21.71;ReadPosRankSum=2.923;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:3,88:92:99:2030,216,0
chrXII	634860	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;DP=77;Dels=0.00;FS=3.188;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=-0.346;QD=23.78;ReadPosRankSum=1.409;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1864,181,0
chrXII	634941	.	A	G	831	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.77;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:864,90,0
chrXII	634949	.	T	C	863	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.57;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:896,93,0
chrXII	635025	.	A	G	938	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.84;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:971,102,0
chrXII	635234	.	G	C	1349	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.3356;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.13;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1382,147,0
chrXII	635382	.	C	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=17.96;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1272,135,0
chrXII	635391	.	T	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.9094;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=17.52;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1347,144,0
chrXII	635886	.	A	G	1752	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9046;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.46;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1785,189,0
chrXII	636568	.	C	T	49.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.176;DP=70;Dels=0.04;FS=56.852;HaplotypeScore=14.7658;MLEAC=1;MLEAF=0.500;MQ=56.55;MQ0=0;MQRankSum=-1.908;QD=0.70;ReadPosRankSum=1.169;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,23:67:79:79,0,479
chrXII	636735	.	G	A	2302	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.25;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2335,243,0
chrXII	636738	.	C	A	2256	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=23.26;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2289,234,0
chrXII	637236	.	A	T	2038	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.26;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2071,216,0
chrXII	641415	.	C	T	6120.01	PASS	AC=2;AF=1.00;AN=2;DP=250;Dels=0.00;FS=0.000;HaplotypeScore=16.9337;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.48;SB=-2.879e+03	GT:AD:DP:GQ:PL	1/1:0,250:250:99:6120,652,0
chrXII	642156	.	A	T	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;DP=48;Dels=0.00;FS=15.120;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.063;QD=23.33;ReadPosRankSum=3.227;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:4,44:48:99:1153,117,0
chrXII	642188	.	T	A	953	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.72;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:986,102,0
chrXII	644075	.	A	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.33;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1251,138,0
chrXII	644081	.	A	G	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.729;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.910;QD=18.86;ReadPosRankSum=1.674;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1146,120,0
chrXII	644135	.	C	T	1121	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=14.75;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1154,132,0
chrXII	644169	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.48;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1515,159,0
chrXII	644446	.	T	A	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.218;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.507;QD=21.13;ReadPosRankSum=-1.319;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1871,207,0
chrXII	644551	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.83;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1241,135,0
chrXII	645246	.	A	C	614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;DP=81;Dels=0.00;FS=7.573;HaplotypeScore=6.1610;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.320;QD=7.58;ReadPosRankSum=2.878;SB=-6.759e+02	GT:AD:DP:GQ:PL	1/1:9,72:81:78:647,78,0
chrXII	645452	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.94;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1059,111,0
chrXII	645800	.	T	C	1028	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=16.32;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1061,114,0
chrXII	646705	.	A	G	1848	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.81;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1881,201,0
chrXII	646825	.	T	C	1807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.463;QD=20.08;ReadPosRankSum=1.617;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1840,195,0
chrXII	646900	.	T	C	1127	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=10.3673;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.18;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1160,126,0
chrXII	646951	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.62;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1229,132,0
chrXII	647095	.	A	G	1657	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.01;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1690,180,0
chrXII	647371	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.29;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1167,123,0
chrXII	648985	.	A	G	2605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;DP=113;Dels=0.00;FS=11.596;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.688;QD=23.05;ReadPosRankSum=2.938;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:3,110:113:99:2638,276,0
chrXII	649837	.	A	G	3047	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.9938;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.18;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3080,330,0
chrXII	657041	.	G	A	652	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.73;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:685,69,0
chrXII	657181	.	A	C	1414	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.44;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1447,156,0
chrXII	657258	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=6.616;HaplotypeScore=69.0306;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;MQRankSum=-0.711;QD=15.33;ReadPosRankSum=1.643;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1229,129,0
chrXII	657303	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=8.953;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;MQRankSum=-1.606;QD=14.26;ReadPosRankSum=1.638;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:1,109:112:99:1630,177,0
chrXII	657332	.	G	C	1813	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=17.95;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1846,198,0
chrXII	657352	.	C	A	1931	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=22.20;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1964,201,0
chrXII	657448	.	C	T	2107	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.22;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2140,225,0
chrXII	657492	.	C	G	2638	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.77;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2671,288,0
chrXII	657899	.	A	G	1846	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;QD=16.19;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:1879,201,0
chrXII	657914	.	T	C	1642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=125;Dels=0.00;FS=2.973;HaplotypeScore=6.1602;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=0;MQRankSum=-1.517;QD=13.14;ReadPosRankSum=2.370;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:2,122:125:99:1675,180,0
chrXII	657918	.	A	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=90.9175;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=12.63;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:1625,177,0
chrXII	658104	.	G	A	2404	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=25.57;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2437,246,0
chrXII	658158	.	G	C	2020	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.49;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:2053,216,0
chrXII	658577	.	T	C	2231	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.45;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2264,240,0
chrXII	658599	.	G	T	2340	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=22.29;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2373,249,0
chrXII	658960	.	A	G	2197	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.346;QD=24.41;ReadPosRankSum=1.694;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2230,237,0
chrXII	659389	.	C	T	822	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.87;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:93:855,93,0
chrXII	659916	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.10;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1801,195,0
chrXII	659919	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.64;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1844,198,0
chrXII	660046	.	T	C	1368	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6777;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.59;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1401,150,0
chrXII	660916	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1396,147,0
chrXII	661075	.	T	A	1192	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1225,129,0
chrXII	661426	.	G	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.45;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1229,126,0
chrXII	661927	.	A	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.07;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1417,150,0
chrXII	661969	.	G	A	1497	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.76;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1530,159,0
chrXII	662548	.	G	A	2066	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.96;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2099,219,0
chrXII	663017	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.209;QD=24.91;ReadPosRankSum=1.667;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1353,141,0
chrXII	663126	.	A	T	3097	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.46;SB=-1.616e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3130,330,0
chrXII	663332	.	G	A	2013	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.88;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2046,213,0
chrXII	663890	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.223;QD=21.38;ReadPosRankSum=1.121;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1487,156,0
chrXII	664619	.	G	A	1306	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.14;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1339,138,0
chrXII	664658	.	G	A	1469	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.95;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1502,156,0
chrXII	665305	.	G	A	1124	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=20.07;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1157,120,0
chrXII	665307	.	A	G	1010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=-1.064;QD=17.72;ReadPosRankSum=0.881;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1043,114,0
chrXII	665343	.	G	T	567	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=9.45;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:66:600,66,0
chrXII	665345	.	T	C	650	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;MQRankSum=-1.335;QD=10.66;ReadPosRankSum=1.675;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:75:683,75,0
chrXII	665418	.	G	C	2092	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.3521;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.12;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2125,222,0
chrXII	665551	.	C	A	4367.01	PASS	AC=2;AF=1.00;AN=2;DP=230;Dels=0.00;FS=0.000;HaplotypeScore=26.6907;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.99;SB=-1.806e+03	GT:AD:DP:GQ:PL	1/1:0,229:230:99:4367,474,0
chrXII	666164	.	G	T	2551	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.91;SB=-1.505e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2584,276,0
chrXII	666395	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.2097;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.82;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1364,144,0
chrXII	667339	.	A	G	1596	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1629,174,0
chrXII	667442	.	A	G	1497	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=18.95;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1530,165,0
chrXII	668005	.	T	G	584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.744;DP=161;Dels=0.00;FS=1.315;HaplotypeScore=227.0983;MLEAC=2;MLEAF=1.00;MQ=38.37;MQ0=0;MQRankSum=5.680;QD=3.63;ReadPosRankSum=-10.525;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:95,61:161:69:617,69,0
chrXII	668207	.	G	C	2140	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.77;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2173,234,0
chrXII	668544	.	A	G	2589	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.513;HaplotypeScore=9.6788;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-1.150;QD=21.76;ReadPosRankSum=1.645;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2622,285,0
chrXII	669768	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.26;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1734,183,0
chrXII	669844	.	A	G	1041	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=37.6331;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=14.87;SB=-1.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1074,117,0
chrXII	669897	.	C	A	826	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=9.83;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:90:859,90,0
chrXII	669920	.	G	T	1243	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=12.81;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1276,132,0
chrXII	669936	.	A	G	1474	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=14.89;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1507,159,0
chrXII	669990	.	T	A	1597	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=17.17;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1630,165,0
chrXII	669994	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=16.71;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1587,165,0
chrXII	670009	.	T	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=17.33;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1454,162,0
chrXII	670405	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.60;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1228,132,0
chrXII	670460	.	C	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.23;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1186,123,0
chrXII	671100	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=3.452;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.173;QD=21.68;ReadPosRankSum=1.676;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1399,150,0
chrXII	671310	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.14;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1450,153,0
chrXII	671563	.	T	C	1038	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=0.485;QD=19.96;ReadPosRankSum=1.663;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,49:52:99:1071,117,0
chrXII	671669	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.81;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1720,183,0
chrXII	671821	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.98;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1527,162,0
chrXII	671956	.	A	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.36;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1464,162,0
chrXII	672242	.	G	A	1018	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.66;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1051,108,0
chrXII	672265	.	A	G	896	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.29;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:929,99,0
chrXII	672293	.	A	G	982	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=18.53;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1015,108,0
chrXII	672317	.	T	C	1257	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.49;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1290,141,0
chrXII	672394	.	C	T	1837	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.0451;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.87;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1870,195,0
chrXII	674079	.	A	C	1392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.129;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0489;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.678;QD=19.33;ReadPosRankSum=1.338;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1425,153,0
chrXII	674612	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.31;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1022,108,0
chrXII	675142	.	A	G	2241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.304;QD=23.10;ReadPosRankSum=1.696;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2274,246,0
chrXII	676076	.	G	C	3068	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.31;SB=-1.497e+03	GT:AD:DP:GQ:PL	1/1:0,141:144:99:3101,327,0
chrXII	676090	.	G	A	3163	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.66;SB=-1.510e+03	GT:AD:DP:GQ:PL	1/1:0,144:146:99:3196,330,0
chrXII	676885	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.24;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1851,189,0
chrXII	677005	.	A	G	1041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=1.122;QD=18.59;ReadPosRankSum=2.359;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:2,52:56:99:1074,114,0
chrXII	677041	.	G	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1268,132,0
chrXII	677132	.	C	T	1963	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=25.17;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1996,201,0
chrXII	677164	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.099;QD=22.99;ReadPosRankSum=1.584;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1642,177,0
chrXII	677195	.	T	C	1344	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=23.17;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1377,147,0
chrXII	677323	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.83;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1654,180,0
chrXII	677699	.	T	G	2168	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.68;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2201,237,0
chrXII	677900	.	T	C	1633	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.07;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1666,174,0
chrXII	677991	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.03;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1242,132,0
chrXII	678069	.	G	A	1851	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.08;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1884,195,0
chrXII	678191	.	C	A	1504	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=16.17;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1537,171,0
chrXII	678194	.	C	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5142;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=17.66;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1569,162,0
chrXII	678961	.	T	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.51;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1700,180,0
chrXII	680062	.	C	A	2447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=1.579;QD=21.65;ReadPosRankSum=0.015;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2480,273,0
chrXII	680346	.	T	C	1527	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.92;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1560,168,0
chrXII	680364	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.46;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1491,150,0
chrXII	680379	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.70;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1432,150,0
chrXII	680974	.	A	G	1184	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1217,135,0
chrXII	681115	.	A	G	3015	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.74;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3048,327,0
chrXII	681443	.	G	A	1903	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.9021;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.62;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1936,198,0
chrXII	681563	.	A	G	1466	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.8056;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.925;QD=20.08;ReadPosRankSum=1.685;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1499,165,0
chrXII	681851	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.840;QD=21.05;ReadPosRankSum=1.680;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1422,153,0
chrXII	682229	.	T	C	2357	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.81;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2390,255,0
chrXII	682675	.	T	C	2279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=118;Dels=0.00;FS=2.965;HaplotypeScore=111.3502;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.095;QD=19.31;ReadPosRankSum=2.386;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:2,114:118:99:2312,249,0
chrXII	682830	.	G	A	2031	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=20.31;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2064,213,0
chrXII	682839	.	C	A	2337	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.64;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2370,240,0
chrXII	683074	.	A	G	1743	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.394;DP=82;Dels=0.00;FS=3.340;HaplotypeScore=7.0569;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=0.211;QD=21.26;ReadPosRankSum=1.690;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1776,189,0
chrXII	683220	.	A	C	2333	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=104;Dels=0.00;FS=3.043;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=0.108;QD=22.43;ReadPosRankSum=2.402;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:2,101:104:99:2366,255,0
chrXII	683250	.	G	A	2229	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.1307;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.26;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2262,246,0
chrXII	683290	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.463;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.286;QD=17.68;ReadPosRankSum=1.656;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1642,174,0
chrXII	683297	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=16.93;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1540,168,0
chrXII	683405	.	T	C	1522	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=6.927;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.176;QD=22.06;ReadPosRankSum=1.481;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1555,168,0
chrXII	683462	.	G	A	1130	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=24.57;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1163,120,0
chrXII	683798	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.11;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1504,159,0
chrXII	683858	.	T	C	1498	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8659;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.41;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1531,165,0
chrXII	683924	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=6.388;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.421;QD=23.89;ReadPosRankSum=1.685;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1801,195,0
chrXII	683966	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.457;DP=63;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.457;QD=23.38;ReadPosRankSum=0.962;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1506,139,0
chrXII	684068	.	T	G	2083	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.89;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2116,222,0
chrXII	684167	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.16;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1832,198,0
chrXII	684641	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.79;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1359,144,0
chrXII	684653	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.01;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1414,150,0
chrXII	684785	.	G	A	2346	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2379,243,0
chrXII	685309	.	A	G	2810	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=25.09;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2843,303,0
chrXII	685709	.	C	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=17.29;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1295,141,0
chrXII	685721	.	A	T	1206	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.041;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;MQRankSum=-1.195;QD=16.99;ReadPosRankSum=1.683;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1239,132,0
chrXII	685853	.	T	C	2706	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-1.384e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2739,288,0
chrXII	686636	.	C	T	2777	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.1062;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.36;SB=-1.671e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2810,285,0
chrXII	686785	.	G	A	2022	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=20.02;SB=-1.292e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2055,213,0
chrXII	686789	.	G	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.67;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1980,213,0
chrXII	687563	.	A	T	99.26	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=52.8002;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=1.17;SB=-9.593e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:15:132,15,0
chrXII	687746	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=73;Dels=0.00;FS=2.801;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=-1.148;QD=20.41;ReadPosRankSum=2.313;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:2,70:73:99:1523,162,0
chrXII	687766	.	G	T	1901	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.7920;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.60;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1934,201,0
chrXII	687811	.	A	T	2057	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=20.78;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2090,213,0
chrXII	687816	.	G	A	2165	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=20.82;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,101:104:99:2198,222,0
chrXII	687973	.	A	C	944	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=16.86;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:99:977,105,0
chrXII	688077	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=21.02;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2051,216,0
chrXII	688227	.	C	A	1398	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=26.38;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1431,147,0
chrXII	688237	.	T	G	1138	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.76;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1171,126,0
chrXII	688265	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.91;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1197,135,0
chrXII	688326	.	T	C	1931	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=23.84;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1964,207,0
chrXII	688522	.	C	T	2212	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.2937;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.48;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2245,243,0
chrXII	689216	.	G	T	1024	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.81;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1057,111,0
chrXII	689719	.	G	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.65;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1452,147,0
chrXII	689916	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=6.0793;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.30;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1237,132,0
chrXII	689955	.	C	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=25.59;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1517,156,0
chrXII	690162	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=25.11;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1414,150,0
chrXII	690280	.	A	G	2426	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.51;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2459,264,0
chrXII	690725	.	C	T	2249	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.67;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:2282,237,0
chrXII	691340	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.480;QD=21.02;ReadPosRankSum=1.669;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1210,129,0
chrXII	691485	.	T	A	1583	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=9.0650;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.61;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1616,168,0
chrXII	691520	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.6141;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;MQRankSum=1.481;QD=23.58;ReadPosRankSum=1.582;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1660,177,0
chrXII	691605	.	A	G	1418	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1451,156,0
chrXII	691650	.	G	A	1690	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.49;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1723,180,0
chrXII	691866	.	A	G	2036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.768;QD=20.57;ReadPosRankSum=1.696;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:1,96:99:99:2069,222,0
chrXII	692685	.	T	C	1818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.507;QD=22.17;ReadPosRankSum=1.605;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1851,198,0
chrXII	692970	.	C	T	2414	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2447,252,0
chrXII	693579	.	A	G	1790	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1823,192,0
chrXII	694203	.	C	T	2015	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=24.88;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2048,213,0
chrXII	694211	.	C	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.52;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1690,177,0
chrXII	694318	.	C	T	2467	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.95;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2500,252,0
chrXII	694377	.	C	T	3008	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=10.8088;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.18;SB=-1.397e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3041,330,0
chrXII	694826	.	A	T	630	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.58;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:663,72,0
chrXII	694841	.	T	C	706	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=16.81;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:78:739,78,0
chrXII	694862	.	T	C	587	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=16.31;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:620,66,0
chrXII	694939	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.85;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1972,213,0
chrXII	694951	.	A	G	2248	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.26;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2281,246,0
chrXII	694982	.	C	T	2255	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.11;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2288,237,0
chrXII	696350	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1640,174,0
chrXII	696449	.	G	A	2322	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.33;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2355,246,0
chrXII	696570	.	A	G	2512	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.449;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.913;QD=22.43;ReadPosRankSum=1.197;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:1,109:112:99:2545,261,0
chrXII	696795	.	A	G	2008	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.59;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2041,216,0
chrXII	696990	.	T	C	1864	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.53;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1897,201,0
chrXII	697086	.	G	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.44;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1855,189,0
chrXII	697219	.	A	G	1831	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1864,198,0
chrXII	697759	.	C	T	1747	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.57;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1780,186,0
chrXII	697956	.	T	C	1805	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.99;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1838,198,0
chrXII	698944	.	G	A	1852	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.35;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1885,195,0
chrXII	699067	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.33;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1719,186,0
chrXII	699518	.	T	C	2810	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.30;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2843,303,0
chrXII	699973	.	G	A	594	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=10.07;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:69:627,69,0
chrXII	700029	.	C	G	2313	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.9688;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.09;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2346,252,0
chrXII	700524	.	C	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.78;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1673,174,0
chrXII	700890	.	T	A	701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=8.177;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.205;QD=15.24;ReadPosRankSum=1.582;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:72:734,72,0
chrXII	701106	.	G	A	1106	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.84;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1139,120,0
chrXII	701265	.	A	G	1969	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.31;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2002,213,0
chrXII	701704	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.75;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1356,144,0
chrXII	701793	.	A	T	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.6741;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.710;QD=21.79;ReadPosRankSum=1.619;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1384,141,0
chrXII	702363	.	G	A	1428	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.64;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1461,156,0
chrXII	702384	.	T	C	1263	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.55;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1296,138,0
chrXII	702585	.	C	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.08;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1711,183,0
chrXII	703446	.	G	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.5840;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.36;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1446,150,0
chrXII	703659	.	G	A	1926	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.89;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1959,216,0
chrXII	703932	.	C	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.33;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1858,195,0
chrXII	704468	.	C	T	848	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=15.14;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:93:881,93,0
chrXII	704793	.	A	G	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.4455;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.611;QD=21.88;ReadPosRankSum=1.672;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:1,56:59:99:1324,144,0
chrXII	704823	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=16.20;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1232,129,0
chrXII	704829	.	G	A	1273	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=16.75;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1306,135,0
chrXII	704970	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.38;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1370,141,0
chrXII	704992	.	T	G	1180	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=18.15;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1213,132,0
chrXII	705209	.	G	A	1666	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.575;HaplotypeScore=3.9703;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=-0.591;QD=20.32;ReadPosRankSum=-1.225;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1699,189,0
chrXII	705221	.	C	T	1816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.907;QD=21.62;ReadPosRankSum=0.206;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1849,189,0
chrXII	705383	.	A	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.90;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1406,153,0
chrXII	706112	.	T	C	2501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=116;Dels=0.00;FS=9.696;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.695;QD=21.56;ReadPosRankSum=2.321;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:2,113:116:99:2534,270,0
chrXII	706279	.	T	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.24;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1171,129,0
chrXII	706419	.	C	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.25;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1997,204,0
chrXII	706951	.	C	T	2014	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.38;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2047,222,0
chrXII	707098	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=3.882;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.470;QD=22.97;ReadPosRankSum=1.680;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1572,165,0
chrXII	708047	.	A	C	1720	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.77;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1753,186,0
chrXII	708132	.	C	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.39;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1894,195,0
chrXII	708425	.	C	T	2572	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.60;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2605,276,0
chrXII	708595	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.76;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1945,198,0
chrXII	708796	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=17.03;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1651,171,0
chrXII	708955	.	C	T	1319	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.3272;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.98;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1352,141,0
chrXII	709102	.	T	A	947	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2938;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=20.59;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:980,102,0
chrXII	709114	.	C	T	878	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=38.4224;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=19.09;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:911,96,0
chrXII	709384	.	A	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=22.28;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1214,132,0
chrXII	710068	.	C	A	1115	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.27;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1148,117,0
chrXII	710116	.	A	G	658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.702;QD=17.78;ReadPosRankSum=1.545;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:1,36:37:72:691,72,0
chrXII	710493	.	A	T	2155	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.6818;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.68;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2188,231,0
chrXII	710894	.	C	G	1741	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.24;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1774,192,0
chrXII	710948	.	G	A	2664	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=20.18;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2697,282,0
chrXII	711337	.	A	G	1691	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.68;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1724,186,0
chrXII	711375	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.08;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1733,177,0
chrXII	711837	.	T	G	852	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.2436;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.67;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:96:885,96,0
chrXII	712958	.	C	T	572	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.83;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:63:605,63,0
chrXII	712990	.	A	C	851	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=24.31;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,34:35:93:884,93,0
chrXII	713021	.	T	C	1045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.055;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.866;QD=20.90;ReadPosRankSum=2.352;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:2,48:50:99:1078,117,0
chrXII	713047	.	A	T	1554	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.52;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1587,165,0
chrXII	713485	.	A	G	1773	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3140;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.44;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1806,192,0
chrXII	714230	.	A	G	2072	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=11.3740;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.12;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2105,228,0
chrXII	714368	.	C	T	1906	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.95;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1939,207,0
chrXII	714407	.	A	G	2212	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.27;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2245,240,0
chrXII	714439	.	G	A	2300	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.00;SB=-1.368e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2333,243,0
chrXII	714641	.	G	A	3204	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.94;SB=-1.580e+03	GT:AD:DP:GQ:PL	1/1:0,152:153:99:3237,357,0
chrXII	715129	.	G	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.95;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1855,204,0
chrXII	715595	.	A	G	2029	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.80;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2062,219,0
chrXII	715622	.	A	T	2703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=121;Dels=0.00;FS=4.664;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.895;QD=22.34;ReadPosRankSum=1.588;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2736,297,0
chrXII	715955	.	C	T	2144	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.09;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2177,225,0
chrXII	716081	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.32;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1856,189,0
chrXII	716177	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.17;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1102,114,0
chrXII	716399	.	C	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.80;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1645,171,0
chrXII	716513	.	A	G	1086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=56;Dels=0.00;FS=6.154;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=2.502;QD=19.39;ReadPosRankSum=2.872;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:3,52:56:99:1119,117,0
chrXII	716594	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.495;QD=21.15;ReadPosRankSum=1.685;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1577,171,0
chrXII	717136	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.56;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1733,174,0
chrXII	717430	.	C	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.36;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1140,120,0
chrXII	718154	.	A	G	528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;MQRankSum=0.232;QD=11.00;ReadPosRankSum=2.141;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:60:561,60,0
chrXII	718515	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.33;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1517,165,0
chrXII	719400	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.33;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1654,177,0
chrXII	720191	.	A	G	1769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=6.388;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-1.639;QD=23.28;ReadPosRankSum=1.685;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,73:76:99:1802,192,0
chrXII	721788	.	C	T	3492.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.2349;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=24.77;SB=-1.796e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:3492,366,0
chrXII	722023	.	A	G	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.388;QD=20.60;ReadPosRankSum=1.629;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1434,153,0
chrXII	723283	.	G	C	1127	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.12;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1160,123,0
chrXII	723463	.	T	C	709	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.66;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:742,78,0
chrXII	724552	.	A	T	1869	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.48;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1902,198,0
chrXII	725538	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.66;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1249,126,0
chrXII	725578	.	T	C	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=3.887;HaplotypeScore=6.6413;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-0.093;QD=19.76;ReadPosRankSum=1.620;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1871,201,0
chrXII	725693	.	A	T	3714.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=25.27;SB=-1.956e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3714,385,0
chrXII	725848	.	C	A	2013	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.65;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2046,213,0
chrXII	725936	.	G	A	2431	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.93;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2464,255,0
chrXII	726161	.	C	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.68;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1377,150,0
chrXII	726449	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1618,174,0
chrXII	726848	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=1.058;QD=22.00;ReadPosRankSum=2.038;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:1089,117,0
chrXII	727328	.	A	G	673	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:75:706,75,0
chrXII	727539	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=22.96;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1273,135,0
chrXII	727896	.	A	G	1095	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.91;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1128,120,0
chrXII	728082	.	G	A	1949	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.18;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1982,207,0
chrXII	728204	.	A	G	1036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=50;Dels=0.00;FS=6.472;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.965;QD=20.72;ReadPosRankSum=2.352;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:2,48:50:99:1069,114,0
chrXII	728527	.	T	C	1096	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.686;QD=19.57;ReadPosRankSum=1.602;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,52:56:99:1129,123,0
chrXII	728646	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.94;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1547,165,0
chrXII	728793	.	T	C	2346	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=22.13;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2379,249,0
chrXII	728808	.	C	T	2363	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.55;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2396,243,0
chrXII	729050	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.832;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.239;QD=18.43;ReadPosRankSum=1.673;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1102,120,0
chrXII	729104	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-0.815;QD=22.03;ReadPosRankSum=1.019;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1531,159,0
chrXII	729242	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.90;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1350,147,0
chrXII	729581	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=19.32;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1192,126,0
chrXII	729602	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.112;QD=16.60;ReadPosRankSum=1.676;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1062,114,0
chrXII	729605	.	G	T	1000	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=15.87;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1033,105,0
chrXII	729962	.	T	C	1422	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=23.31;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1455,156,0
chrXII	730316	.	G	A	1938	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.84;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1971,201,0
chrXII	730778	.	G	A	2141	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.85;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2174,225,0
chrXII	731012	.	C	T	1190	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1223,126,0
chrXII	731281	.	G	A	1875	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.38;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1908,207,0
chrXII	731466	.	A	C	1154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-1.556;QD=19.23;ReadPosRankSum=1.674;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1187,129,0
chrXII	731569	.	A	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.8042;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=19.77;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1832,195,0
chrXII	731664	.	T	C	1099	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=9.622;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=33.33;MQ0=0;MQRankSum=-1.165;QD=19.98;ReadPosRankSum=1.669;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1132,120,0
chrXII	731668	.	T	A	780	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=10.512;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;MQRankSum=-0.115;QD=17.33;ReadPosRankSum=1.655;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:1,44:45:96:813,96,0
chrXII	731669	.	G	A	756	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=10.512;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;MQRankSum=1.193;QD=16.80;ReadPosRankSum=1.578;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:1,44:45:76:789,76,0
chrXII	731671	.	A	T	738	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.116;DP=45;Dels=0.00;FS=10.512;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;MQRankSum=0.731;QD=16.40;ReadPosRankSum=-1.732;SB=-7.301e+01	GT:AD:DP:GQ:PL	1/1:1,44:45:70:771,70,0
chrXII	732073	.	T	C	3205.99	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.74;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3239,351,0
chrXII	732235	.	C	A	2064	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=17.2260;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;QD=21.28;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2097,219,0
chrXII	732435	.	G	A	2577	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=25.02;SB=-1.424e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2610,264,0
chrXII	733015	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.54;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1563,165,0
chrXII	733837	.	G	A	1871	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.56;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1904,195,0
chrXII	734033	.	A	G	2180	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=26.27;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2213,237,0
chrXII	734064	.	A	G	1235	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=20.25;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1268,138,0
chrXII	734068	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=20.02;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1254,135,0
chrXII	734157	.	A	T	1943	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=22.33;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1976,216,0
chrXII	734169	.	G	A	2024	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.3480;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=23.26;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2057,213,0
chrXII	734238	.	G	A	2704	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=22.92;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2737,282,0
chrXII	734300	.	A	G	3386.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=23.68;SB=-1.913e+03	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3386,357,0
chrXII	734442	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=3.815;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.33;MQ0=0;MQRankSum=-0.826;QD=18.20;ReadPosRankSum=1.572;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1234,132,0
chrXII	734446	.	C	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=18.55;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1257,126,0
chrXII	734599	.	T	C	2087	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=136;Dels=0.00;FS=5.208;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.16;MQ0=0;MQRankSum=1.452;QD=15.35;ReadPosRankSum=1.707;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:1,135:136:99:2120,231,0
chrXII	734602	.	C	T	2002	SnpCluster	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.54;MQ0=0;QD=15.17;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2035,213,0
chrXII	734608	.	C	A	1775	SnpCluster	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;QD=14.09;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:1808,198,0
chrXII	734612	.	T	G	1736	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=5.952;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;MQRankSum=1.347;QD=13.78;ReadPosRankSum=1.677;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,125:126:99:1769,189,0
chrXII	734621	.	T	A	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=109;Dels=0.00;FS=5.903;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;MQRankSum=1.478;QD=13.47;ReadPosRankSum=1.700;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:1501,162,0
chrXII	734628	.	T	C	1517	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=15.17;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1550,165,0
chrXII	734633	.	G	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=14.77;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1540,162,0
chrXII	734648	.	C	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;QD=15.74;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1560,162,0
chrXII	734649	.	A	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;QD=14.62;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1451,159,0
chrXII	734674	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=13.12;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1371,147,0
chrXII	734706	.	C	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.62;MQ0=0;QD=14.81;SB=-1.656e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1721,174,0
chrXII	734728	.	T	C	1436	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.246;DP=121;Dels=0.00;FS=3.032;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;MQRankSum=0.376;QD=11.87;ReadPosRankSum=2.409;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:2,119:121:99:1469,139,0
chrXII	734732	.	T	C	1448	SnpCluster	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.38;SB=-1.500e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1481,159,0
chrXII	734738	.	A	G	1472	SnpCluster	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.26;SB=-1.444e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:1505,159,0
chrXII	734740	.	A	G	1420	SnpCluster	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.79;SB=-1.459e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1453,156,0
chrXII	734763	.	C	G	1002	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=10.89;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1035,111,0
chrXII	734768	.	A	C	991	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=4.382;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;MQRankSum=0.974;QD=10.32;ReadPosRankSum=1.696;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1024,111,0
chrXII	734773	.	G	A	1024	SnpCluster	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=0;QD=10.45;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1057,114,0
chrXII	734786	.	A	T	1160	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=11.37;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1193,123,0
chrXII	734978	.	A	G	2220	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=36.44;MQ0=0;QD=18.66;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2253,243,0
chrXII	735713	.	A	G	2850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=125;Dels=0.00;FS=5.252;HaplotypeScore=9.5708;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.978;QD=22.80;ReadPosRankSum=1.704;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,123:125:99:2883,312,0
chrXII	735833	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.03;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1691,183,0
chrXII	736001	.	A	G	2085	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.85;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2118,225,0
chrXII	736154	.	G	A	2503	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.9447;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.77;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2536,264,0
chrXII	736586	.	G	A	1853	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.5178;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.51;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1886,195,0
chrXII	736757	.	G	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1763;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.10;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1480,153,0
chrXII	737605	.	C	T	2709	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.0374;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=21.33;SB=-1.398e+03	GT:AD:DP:GQ:PL	1/1:0,125:127:99:2742,285,0
chrXII	737617	.	G	A	2924	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.7261;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.98;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2957,327,0
chrXII	738097	.	G	C	2630	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.8970;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.05;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2663,279,0
chrXII	738125	.	T	C	1830	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.28;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1863,198,0
chrXII	738602	.	A	G	2282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=109;Dels=0.00;FS=3.006;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.501;QD=20.94;ReadPosRankSum=2.359;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:2,107:109:99:2315,249,0
chrXII	739411	.	A	G	2132	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2165,234,0
chrXII	739624	.	T	C	950	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=40;Dels=0.00;FS=3.078;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.341;QD=23.75;ReadPosRankSum=2.327;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:2,38:40:99:983,99,0
chrXII	739705	.	C	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.00;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1650,168,0
chrXII	739838	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.45;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1792,189,0
chrXII	739958	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.29;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1617,165,0
chrXII	740063	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1716,174,0
chrXII	740405	.	G	A	2309	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.31;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2342,243,0
chrXII	740813	.	A	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.69;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1419,153,0
chrXII	740861	.	A	G	1038	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5183;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=16.48;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1071,114,0
chrXII	741197	.	T	C	1952	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.18;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1985,219,0
chrXII	741422	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.8381;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.60;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1718,180,0
chrXII	742073	.	T	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.5630;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.77;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1483,156,0
chrXII	742174	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.83;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1608,165,0
chrXII	742199	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=7.691;HaplotypeScore=9.9014;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-0.360;QD=20.96;ReadPosRankSum=2.381;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1542,168,0
chrXII	742787	.	T	C	1797	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.04;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1830,195,0
chrXII	743013	.	T	A	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.509;QD=23.11;ReadPosRankSum=1.676;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1466,162,0
chrXII	743135	.	A	G	1733	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.74;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1766,186,0
chrXII	743183	.	G	A	1546	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.74;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1579,165,0
chrXII	743291	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.78;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1605,165,0
chrXII	743763	.	C	T	2938	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.69;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2971,318,0
chrXII	744392	.	T	A	1981	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.87;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2014,213,0
chrXII	744483	.	A	G	1641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.617;QD=18.86;ReadPosRankSum=1.692;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1674,180,0
chrXII	744489	.	A	C	1524	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=18.36;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1557,174,0
chrXII	744522	.	A	G	1370	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.12;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1403,147,0
chrXII	744864	.	G	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=22.30;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1795,189,0
chrXII	744885	.	T	A	1591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.890;QD=21.50;ReadPosRankSum=1.639;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1624,177,0
chrXII	745185	.	C	T	1864	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=27.82;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1897,195,0
chrXII	745324	.	T	C	2225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.2526;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.113;QD=23.92;ReadPosRankSum=1.694;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2258,243,0
chrXII	745374	.	T	C	232.01	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=63.5278;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=3.14;SB=-2.899e+01	GT:AD:DP:GQ:PL	1/1:0,9:74:27:265,27,0
chrXII	745391	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=23.03;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1392,150,0
chrXII	745460	.	A	G	895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=51;Dels=0.04;FS=0.000;HaplotypeScore=18.2893;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.794;QD=17.55;ReadPosRankSum=1.660;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:928,99,0
chrXII	745544	.	G	C	2564	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=21.55;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2597,279,0
chrXII	745555	.	G	A	2864	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.37;SB=-1.647e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2897,303,0
chrXII	745609	.	C	G	2784	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=22.27;SB=-1.392e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2817,297,0
chrXII	745660	.	C	G	2240	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.33;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,91:96:99:2273,237,0
chrXII	745706	.	C	T	1646	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.86;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1679,174,0
chrXII	746036	.	G	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.10;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1842,189,0
chrXII	746180	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.467;QD=22.24;ReadPosRankSum=1.677;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1434,153,0
chrXII	746201	.	T	C	1483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=0.560;QD=22.82;ReadPosRankSum=1.679;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1516,162,0
chrXII	747529	.	G	T	2128	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=23.3681;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.89;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2161,222,0
chrXII	747877	.	C	T	2438	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=24.14;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2471,264,0
chrXII	748299	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.29;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1326,135,0
chrXII	748362	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.94;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1145,126,0
chrXII	748416	.	A	T	1267	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.20;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1300,141,0
chrXII	748644	.	C	T	1778	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.3099;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.92;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1811,192,0
chrXII	749381	.	G	A	1958	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.31;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1991,207,0
chrXII	749415	.	T	C	2061	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=23.69;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2094,222,0
chrXII	749442	.	C	T	1897	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=25.29;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1930,201,0
chrXII	749546	.	T	G	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=81;Dels=0.00;FS=2.926;HaplotypeScore=13.7822;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.596;QD=19.28;ReadPosRankSum=2.387;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:2,76:81:99:1595,177,0
chrXII	749793	.	A	G	2533	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.29;SB=-1.421e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2566,273,0
chrXII	749807	.	A	G	2251	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.41;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2284,246,0
chrXII	750648	.	A	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.62;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1243,135,0
chrXII	750669	.	T	C	1077	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=18.89;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1110,120,0
chrXII	750695	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=16.50;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1155,123,0
chrXII	750944	.	C	T	2062	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.70;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2095,213,0
chrXII	750988	.	C	T	1623	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.54;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1656,168,0
chrXII	751040	.	C	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=24.69;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1687,171,0
chrXII	751083	.	G	C	1724	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.10;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1757,189,0
chrXII	751110	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.09;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1520,159,0
chrXII	751827	.	A	G	536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.963;QD=19.14;ReadPosRankSum=1.605;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:1,26:28:63:569,63,0
chrXII	752103	.	C	A	800	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:87:833,87,0
chrXII	753525	.	T	C	1090	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.80;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1123,120,0
chrXII	754049	.	G	A	943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=47;Dels=0.00;FS=3.108;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.655;QD=20.06;ReadPosRankSum=1.193;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:99:976,108,0
chrXII	754651	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1302,132,0
chrXII	754846	.	C	T	1545	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7419;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.77;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1578,165,0
chrXII	754978	.	A	G	2609	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=6.870;HaplotypeScore=11.8399;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.732;QD=24.16;ReadPosRankSum=1.700;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2642,288,0
chrXII	755245	.	A	G	1859	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.141;QD=22.67;ReadPosRankSum=1.690;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1892,195,0
chrXII	755553	.	C	T	2187	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.23;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2220,231,0
chrXII	755941	.	A	G	1205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.147;QD=20.42;ReadPosRankSum=1.674;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1238,132,0
chrXII	756137	.	C	T	2294	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.65;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2327,243,0
chrXII	756805	.	T	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=25.75;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1475,153,0
chrXII	757090	.	A	G	2151	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.51;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,96:100:99:2184,237,0
chrXII	757131	.	A	G	2135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.930;DP=100;Dels=0.00;FS=2.501;HaplotypeScore=4.2142;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=0.040;QD=21.35;ReadPosRankSum=1.980;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:3,97:100:99:2168,216,0
chrXII	757138	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2391;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.74;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2045,222,0
chrXII	757478	.	T	A,G	916.79	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=41.3527;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.28;MQ0=0;QD=9.45;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/2:0,44,53:97:34:976,136,34,840,0,822
chrXII	757763	.	C	T	1121	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.38;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1154,120,0
chrXII	757988	.	A	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.45;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1406,150,0
chrXII	758451	.	A	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.53;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1734,186,0
chrXII	758707	.	C	G	984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.535;QD=17.89;ReadPosRankSum=1.354;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1017,108,0
chrXII	758853	.	C	T	1242	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.11;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1275,132,0
chrXII	758967	.	C	A	1689	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.94;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1722,174,0
chrXII	759162	.	A	G	634	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.64;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:75:667,75,0
chrXII	759216	.	G	A	912	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.61;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:945,99,0
chrXII	759290	.	A	G	844	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=3.1977;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=14.81;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:93:877,93,0
chrXII	759292	.	A	T	891	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=4.017;HaplotypeScore=3.1977;MLEAC=2;MLEAF=1.00;MQ=46.61;MQ0=0;MQRankSum=-0.836;QD=15.36;ReadPosRankSum=1.673;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:96:924,96,0
chrXII	759299	.	A	G	928	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=16.28;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:961,99,0
chrXII	759309	.	C	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=17.57;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1052,108,0
chrXII	759452	.	A	G	1657	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.34;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1690,177,0
chrXII	759809	.	A	G	1378	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9338;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.90;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1411,150,0
chrXII	759985	.	A	G	1861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=81;Dels=0.00;FS=4.997;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.855;QD=22.98;ReadPosRankSum=1.688;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:1,78:81:99:1894,201,0
chrXII	760163	.	C	G	1478	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.74;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1511,165,0
chrXII	760396	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.14;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1494,165,0
chrXII	760502	.	C	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.87;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1608,171,0
chrXII	760603	.	C	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.5103;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.50;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1383,138,0
chrXII	760613	.	A	G	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.541;QD=22.00;ReadPosRankSum=1.678;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1441,153,0
chrXII	760719	.	A	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.05;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1233,132,0
chrXII	760839	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=21.09;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1193,126,0
chrXII	760937	.	T	C	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.155;QD=19.69;ReadPosRankSum=1.675;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1234,132,0
chrXII	761118	.	A	T	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=57;Dels=0.00;FS=2.949;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=0.464;QD=19.28;ReadPosRankSum=2.318;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1132,117,0
chrXII	761165	.	C	G	1324	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.23;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1357,144,0
chrXII	761357	.	G	A	1358	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.63;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1391,150,0
chrXII	761513	.	G	C	1581	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.96;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1614,171,0
chrXII	762386	.	T	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.96;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1829,195,0
chrXII	762492	.	A	G	613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=28.6831;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.662;QD=19.16;ReadPosRankSum=2.297;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:2,30:32:69:646,69,0
chrXII	763325	.	A	G	2654	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0350;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2687,291,0
chrXII	763412	.	T	C	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=2.974;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.411;QD=18.82;ReadPosRankSum=2.286;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:2,73:76:99:1463,156,0
chrXII	763502	.	T	C	1472	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1505,165,0
chrXII	763742	.	C	T	3297.01	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=8.9308;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.24;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,134:136:99:3297,348,0
chrXII	764454	.	A	G	1836	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.24;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1869,198,0
chrXII	764481	.	T	C	1753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-0.855;QD=22.19;ReadPosRankSum=1.688;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1786,195,0
chrXII	764623	.	T	C	1826	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=22.27;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1859,201,0
chrXII	764635	.	A	G	1738	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=4.344;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;MQRankSum=0.896;QD=19.75;ReadPosRankSum=1.493;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1771,189,0
chrXII	764796	.	T	A	2415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;DP=116;Dels=0.00;FS=3.037;HaplotypeScore=14.3432;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.022;QD=20.82;ReadPosRankSum=2.406;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:2,114:116:99:2448,255,0
chrXII	765047	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=15.30;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1089,114,0
chrXII	765566	.	A	G	1343	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.19;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1376,147,0
chrXII	765881	.	A	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.95;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1589,174,0
chrXII	765944	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.93;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1634,177,0
chrXII	766039	.	C	T	1985	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.56;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2018,216,0
chrXII	766135	.	T	C	2734	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.8533;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.87;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2767,303,0
chrXII	766225	.	T	G	2191	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.36;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2224,240,0
chrXII	766489	.	G	A	1954	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=17.4765;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.70;SB=-1.476e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1987,207,0
chrXII	766523	.	A	G	422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.896;DP=100;Dels=0.00;FS=1.168;HaplotypeScore=14.0075;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=1.621;QD=4.22;ReadPosRankSum=3.538;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:14,86:100:38:455,38,0
chrXII	768812	.	A	G	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.798;DP=65;Dels=0.00;FS=15.164;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.203;QD=23.88;ReadPosRankSum=2.830;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:99:1585,168,0
chrXII	769229	.	G	A	1077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347;DP=47;Dels=0.00;FS=8.081;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.655;QD=22.91;ReadPosRankSum=1.347;SB=-1.260e+02	GT:AD:DP:GQ:PL	1/1:1,44:47:99:1110,120,0
chrXII	769312	.	G	A	829	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:90:862,90,0
chrXII	770182	.	T	C	2552	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.30;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2585,279,0
chrXII	770488	.	T	G	2751	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.8782;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.92;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2784,303,0
chrXII	770842	.	A	T	2181	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.83;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2214,237,0
chrXII	770890	.	T	A	1385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=4.873;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.403;QD=16.10;ReadPosRankSum=1.692;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1418,153,0
chrXII	771112	.	G	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.62;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1171,117,0
chrXII	771115	.	G	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.11;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1065,120,0
chrXII	771397	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.42;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1649,174,0
chrXII	771559	.	G	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=23.76;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1696,183,0
chrXII	772613	.	G	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.94;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1255,129,0
chrXII	772635	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.11;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1293,138,0
chrXII	772756	.	A	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.44;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1649,171,0
chrXII	772830	.	C	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.04;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1611,165,0
chrXII	773037	.	G	A	1293	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.96;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1326,147,0
chrXII	773493	.	A	C	1834	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=11.9700;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.33;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1867,198,0
chrXII	773796	.	A	G	2354	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.8149;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.63;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2387,261,0
chrXII	774096	.	G	C	2464	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.43;SB=-1.319e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2497,267,0
chrXII	774654	.	A	G	1771	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.93;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1804,192,0
chrXII	774798	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.146;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.679;QD=22.11;ReadPosRankSum=1.626;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1470,125,0
chrXII	774890	.	C	T	1198	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.97;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1231,126,0
chrXII	774900	.	G	A	1151	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.55;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1184,120,0
chrXII	775104	.	T	C	1665	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.62;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1698,183,0
chrXII	776349	.	A	G	2003	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;MQRankSum=-0.921;QD=21.31;ReadPosRankSum=1.695;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2036,219,0
chrXII	776367	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-0.622;QD=20.13;ReadPosRankSum=1.688;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1603,171,0
chrXII	776377	.	A	T	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-0.427;QD=19.55;ReadPosRankSum=1.597;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1538,159,0
chrXII	776391	.	C	T	1281	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=18.57;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1314,144,0
chrXII	776421	.	T	G	915	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=15.78;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:948,99,0
chrXII	776424	.	T	A	911	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=15.71;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:944,99,0
chrXII	776626	.	G	A	3123	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.80;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3156,357,0
chrXII	776887	.	G	A	2158	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.48;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2191,228,0
chrXII	776992	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.371;QD=21.27;ReadPosRankSum=1.691;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1820,195,0
chrXII	777115	.	T	C	1751	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.0967;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=23.35;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1784,189,0
chrXII	777145	.	A	G	1501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=2.113;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.581;QD=20.01;ReadPosRankSum=1.852;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1534,168,0
chrXII	777151	.	T	A	1566	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9066;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.75;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1599,168,0
chrXII	777169	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.20;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1305,135,0
chrXII	777307	.	G	T	1934	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.98;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1967,210,0
chrXII	777589	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.20;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1920,198,0
chrXII	777678	.	A	G	1955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=88;Dels=0.01;FS=6.173;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.949;QD=22.22;ReadPosRankSum=2.365;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1988,213,0
chrXII	777814	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.162;QD=20.83;ReadPosRankSum=1.678;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1387,150,0
chrXII	777868	.	G	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.18;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1215,135,0
chrXII	777903	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-0.754;QD=17.67;ReadPosRankSum=1.651;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1535,168,0
chrXII	778497	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.75;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1311,138,0
chrXII	779046	.	T	G	1305	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1338,141,0
chrXII	779222	.	G	A	997	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.0312;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=19.94;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1030,105,0
chrXII	779253	.	C	A	1277	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=24.09;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1310,135,0
chrXII	779553	.	T	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.7075;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.47;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1257,135,0
chrXII	779622	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.96;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1262,132,0
chrXII	779623	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=16.01;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1266,132,0
chrXII	780306	.	A	G	830	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.04;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:863,96,0
chrXII	780315	.	C	G	799	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.37;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:90:832,90,0
chrXII	780447	.	T	A	1582	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.481;QD=22.93;ReadPosRankSum=1.682;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1615,165,0
chrXII	780550	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.562;QD=20.26;ReadPosRankSum=1.562;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1269,132,0
chrXII	780774	.	G	A	2512	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.48;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2545,261,0
chrXII	780841	.	A	G	2147	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9100;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.13;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2180,231,0
chrXII	781630	.	G	A	826	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=17.57;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:859,90,0
chrXII	781631	.	C	G	796	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.24;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,45:49:90:829,90,0
chrXII	781795	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1423,153,0
chrXII	781858	.	A	G	1826	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=19.43;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1859,201,0
chrXII	782829	.	T	C	1000	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.83;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1033,111,0
chrXII	782839	.	A	G	875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=-0.922;QD=18.62;ReadPosRankSum=1.659;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:96:908,96,0
chrXII	782878	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=16.94;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1134,114,0
chrXII	782905	.	G	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=17.00;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1563,156,0
chrXII	782909	.	C	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=17.84;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1710,177,0
chrXII	782987	.	G	A	3742.01	PASS	AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=19.6623;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.59;SB=-1.760e+03	GT:AD:DP:GQ:PL	1/1:0,191:191:99:3742,402,0
chrXII	783118	.	T	C	1763	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.51;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1796,189,0
chrXII	783530	.	T	C	2139	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.31;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2172,231,0
chrXII	783557	.	C	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.86;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1264,129,0
chrXII	783750	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.31;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1288,135,0
chrXII	784304	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=0.072;QD=19.77;ReadPosRankSum=1.660;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:982,105,0
chrXII	784462	.	A	G	515	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=13.92;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:548,60,0
chrXII	784463	.	A	T	580	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=15.68;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:63:613,63,0
chrXII	784477	.	T	A	705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;MQRankSum=-0.578;QD=18.08;ReadPosRankSum=1.644;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:75:738,75,0
chrXII	784725	.	G	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.26;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1413,141,0
chrXII	784849	.	G	A	1275	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=49.7120;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.90;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1308,141,0
chrXII	785038	.	G	A	1177	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.29;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1210,126,0
chrXII	785227	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.51;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1087,114,0
chrXII	785521	.	A	T	2620	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=13.5753;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.39;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2653,270,0
chrXII	785947	.	C	T	3765.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.6882;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=22.02;SB=-2.173e+03	GT:AD:DP:GQ:PL	1/1:0,170:171:99:3765,402,0
chrXII	786201	.	G	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.15;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1725,177,0
chrXII	786288	.	C	T	2984	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.53;SB=-1.732e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3017,315,0
chrXII	786298	.	C	T	2869	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=18.51;SB=-1.810e+03	GT:AD:DP:GQ:PL	1/1:0,154:155:99:2902,303,0
chrXII	786333	.	T	C	2178	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=10.8446;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.56;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2211,234,0
chrXII	786447	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=53;Dels=0.00;FS=4.202;HaplotypeScore=2.9448;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.970;QD=17.38;ReadPosRankSum=0.346;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,49:53:99:954,102,0
chrXII	786450	.	A	G	911	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=13.3224;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.19;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:944,99,0
chrXII	786562	.	T	C	1484	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.48;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1517,159,0
chrXII	786949	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.64;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1414,150,0
chrXII	787097	.	G	A	2235	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.69;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2268,249,0
chrXII	787246	.	C	G	1434	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.76;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1467,159,0
chrXII	787307	.	T	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.43;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1917,207,0
chrXII	787359	.	A	C	2499	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.31;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2532,276,0
chrXII	787382	.	T	C	2711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=123;Dels=0.00;FS=5.879;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.877;QD=22.04;ReadPosRankSum=2.910;SB=-1.467e+03	GT:AD:DP:GQ:PL	1/1:3,120:123:99:2744,288,0
chrXII	787424	.	A	G	2866	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.75;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2899,312,0
chrXII	787642	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.38;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1423,147,0
chrXII	787756	.	T	C	2470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.9433;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=1.361;QD=22.05;ReadPosRankSum=-0.340;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2503,270,0
chrXII	787833	.	A	G	2500	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.3768;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.866;QD=22.12;ReadPosRankSum=1.701;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2533,270,0
chrXII	787924	.	T	C	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.236;QD=22.56;ReadPosRankSum=1.034;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1567,171,0
chrXII	788233	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.87;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1588,171,0
chrXII	788350	.	T	C	1929	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.43;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1962,210,0
chrXII	788475	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1377,150,0
chrXII	788655	.	G	A	1705	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.43;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1738,183,0
chrXII	788987	.	G	A	1645	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=23.50;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1678,174,0
chrXII	789047	.	A	G	1623	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=22.23;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1656,180,0
chrXII	789096	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=11.8871;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=14.07;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1201,123,0
chrXII	789112	.	A	G	705.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;DP=76;Dels=0.00;FS=0.983;HaplotypeScore=27.0764;MLEAC=1;MLEAF=0.500;MQ=39.95;MQ0=0;MQRankSum=2.872;QD=9.28;ReadPosRankSum=2.343;SB=-3.536e+02	GT:AD:DP:GQ:PL	0/1:25,50:76:5:735,0,5
chrXII	789125	.	T	G	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;DP=76;Dels=0.00;FS=5.219;HaplotypeScore=45.1356;MLEAC=1;MLEAF=0.500;MQ=38.09;MQ0=0;MQRankSum=-2.989;QD=0.30;ReadPosRankSum=0.496;SB=-2.350e+02	GT:AD:DP:GQ:PL	0/1:44,25:76:53:53,0,596
chrXII	789140	.	A	G	577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.895;DP=67;Dels=0.00;FS=13.187;HaplotypeScore=19.2102;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;MQRankSum=-2.592;QD=8.61;ReadPosRankSum=2.895;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:3,64:67:66:610,66,0
chrXII	789146	.	T	G	514	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.529;DP=63;Dels=0.00;FS=2.834;HaplotypeScore=14.7330;MLEAC=2;MLEAF=1.00;MQ=29.89;MQ0=0;MQRankSum=1.392;QD=8.16;ReadPosRankSum=0.529;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:60:547,60,0
chrXII	789151	.	C	T	32.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;DP=63;Dels=0.00;FS=12.793;HaplotypeScore=16.7505;MLEAC=1;MLEAF=0.500;MQ=28.54;MQ0=0;MQRankSum=-0.163;QD=0.51;ReadPosRankSum=-1.698;SB=-4.101e+01	GT:AD:DP:GQ:PL	0/1:44,18:63:62:62,0,248
chrXII	789152	.	A	G	60.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470;DP=66;Dels=0.00;FS=15.375;HaplotypeScore=18.3156;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=0;MQRankSum=-2.001;QD=0.91;ReadPosRankSum=-1.459;SB=-2.101e+01	GT:AD:DP:GQ:PL	0/1:48,18:66:90:90,0,301
chrXII	789154	.	A	G	82.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;DP=76;Dels=0.00;FS=3.191;HaplotypeScore=41.0831;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=-0.231;QD=1.08;ReadPosRankSum=2.857;SB=-2.800e+02	GT:AD:DP:GQ:PL	0/1:45,31:76:99:112,0,301
chrXII	789167	.	T	G	226.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=58.8126;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-0.112;QD=2.43;ReadPosRankSum=2.665;SB=-4.530e+02	GT:AD:DP:GQ:PL	0/1:36,50:93:99:256,0,228
chrXII	789172	.	C	T	327.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=6.582;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=142.4438;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=-1.341;QD=3.52;ReadPosRankSum=1.863;SB=-4.310e+02	GT:AD:DP:GQ:PL	0/1:47,46:93:99:357,0,141
chrXII	789173	.	A	G	302.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=142.4438;MLEAC=1;MLEAF=0.500;MQ=28.79;MQ0=0;MQRankSum=0.730;QD=3.28;ReadPosRankSum=1.737;SB=-4.070e+02	GT:AD:DP:GQ:PL	0/1:46,46:92:99:332,0,152
chrXII	789175	.	A	G	135.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;DP=99;Dels=0.00;FS=1.760;HaplotypeScore=136.4210;MLEAC=1;MLEAF=0.500;MQ=29.76;MQ0=0;MQRankSum=1.498;QD=1.36;ReadPosRankSum=-2.172;SB=-2.130e+02	GT:AD:DP:GQ:PL	0/1:63,34:99:99:165,0,307
chrXII	789188	.	T	G	306.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;DP=108;Dels=0.00;FS=2.865;HaplotypeScore=60.2975;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=0;MQRankSum=-0.337;QD=2.83;ReadPosRankSum=0.868;SB=-6.250e+02	GT:AD:DP:GQ:PL	0/1:32,75:108:99:336,0,242
chrXII	789193	.	C	T	109.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.031;DP=112;Dels=0.00;FS=1.580;HaplotypeScore=59.5089;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=0;MQRankSum=-0.426;QD=0.97;ReadPosRankSum=0.991;SB=-3.530e+02	GT:AD:DP:GQ:PL	0/1:64,48:112:99:139,0,487
chrXII	789194	.	A	G	100.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.516;DP=114;Dels=0.00;FS=1.555;HaplotypeScore=82.2732;MLEAC=1;MLEAF=0.500;MQ=30.94;MQ0=0;MQRankSum=0.224;QD=0.88;ReadPosRankSum=0.831;SB=-3.310e+02	GT:AD:DP:GQ:PL	0/1:67,47:114:99:130,0,508
chrXII	789209	.	T	G	781	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.587;DP=127;Dels=0.00;FS=8.152;HaplotypeScore=42.1234;MLEAC=2;MLEAF=1.00;MQ=31.74;MQ0=0;MQRankSum=-1.630;QD=6.15;ReadPosRankSum=2.711;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:9,118:127:69:814,69,0
chrXII	789214	.	C	T	307.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.787;DP=131;Dels=0.00;FS=1.591;HaplotypeScore=39.4459;MLEAC=1;MLEAF=0.500;MQ=31.66;MQ0=0;MQRankSum=-0.353;QD=2.34;ReadPosRankSum=0.663;SB=-3.100e+02	GT:AD:DP:GQ:PL	0/1:95,36:131:99:337,0,334
chrXII	789215	.	A	G	267.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;DP=133;Dels=0.00;FS=1.598;HaplotypeScore=39.4459;MLEAC=1;MLEAF=0.500;MQ=31.63;MQ0=0;MQRankSum=1.515;QD=2.01;ReadPosRankSum=1.055;SB=-2.820e+02	GT:AD:DP:GQ:PL	0/1:97,36:133:99:297,0,401
chrXII	789217	.	A	G	177.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.208;DP=136;Dels=0.00;FS=0.645;HaplotypeScore=38.4526;MLEAC=1;MLEAF=0.500;MQ=31.51;MQ0=0;MQRankSum=-0.189;QD=1.30;ReadPosRankSum=0.773;SB=-5.920e+02	GT:AD:DP:GQ:PL	0/1:70,66:136:99:207,0,548
chrXII	789230	.	G	T	278.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.976;DP=139;Dels=0.00;FS=2.160;HaplotypeScore=5.9195;MLEAC=1;MLEAF=0.500;MQ=31.45;MQ0=0;MQRankSum=0.606;QD=2.00;ReadPosRankSum=-0.488;SB=-8.220e+02	GT:AD:DP:GQ:PL	0/1:65,74:139:99:308,0,462
chrXII	789259	.	A	G	604.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;DP=107;Dels=0.00;FS=10.956;HaplotypeScore=16.3347;MLEAC=1;MLEAF=0.500;MQ=36.41;MQ0=0;MQRankSum=-0.375;QD=5.64;ReadPosRankSum=3.382;SB=-6.780e+02	GT:AD:DP:GQ:PL	0/1:29,78:107:99:634,0,171
chrXII	789264	.	T	C	587.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DP=98;Dels=0.00;FS=8.104;HaplotypeScore=13.4735;MLEAC=1;MLEAF=0.500;MQ=37.25;MQ0=0;MQRankSum=-0.805;QD=5.99;ReadPosRankSum=5.407;SB=-6.470e+02	GT:AD:DP:GQ:PL	0/1:24,74:98:99:617,0,156
chrXII	789266	.	G	A	634.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.850;DP=100;Dels=0.00;FS=7.845;HaplotypeScore=10.4926;MLEAC=1;MLEAF=0.500;MQ=37.39;MQ0=0;MQRankSum=-0.641;QD=6.34;ReadPosRankSum=6.324;SB=-7.050e+02	GT:AD:DP:GQ:PL	0/1:24,75:100:99:664,0,139
chrXII	789268	.	G	A	616.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;DP=98;Dels=0.00;FS=6.838;HaplotypeScore=8.5046;MLEAC=1;MLEAF=0.500;MQ=37.62;MQ0=0;MQRankSum=-0.602;QD=6.29;ReadPosRankSum=5.881;SB=-7.290e+02	GT:AD:DP:GQ:PL	0/1:20,77:98:92:646,0,92
chrXII	789269	.	G	A	640.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;DP=97;Dels=0.00;FS=4.896;HaplotypeScore=7.7159;MLEAC=1;MLEAF=0.500;MQ=37.32;MQ0=0;MQRankSum=-0.275;QD=6.60;ReadPosRankSum=6.256;SB=-7.260e+02	GT:AD:DP:GQ:PL	0/1:20,77:97:68:670,0,68
chrXII	789370	.	T	C	1745	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=20.53;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1778,192,0
chrXII	794427	.	T	A	2350	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=22.17;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2383,246,0
chrXII	794440	.	G	A	2150	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.28;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2183,225,0
chrXII	794633	.	C	T	3059	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.99;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,151:153:99:3092,324,0
chrXII	794638	.	T	C	2834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=152;Dels=0.00;FS=5.075;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.960;QD=18.64;ReadPosRankSum=1.709;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:1,147:152:99:2867,309,0
chrXII	795036	.	C	A	2349	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.49;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2382,264,0
chrXII	795312	.	G	A	2468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.105;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5119;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.336;QD=23.50;ReadPosRankSum=-0.313;SB=-1.391e+03	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2501,255,0
chrXII	795548	.	A	G	3600.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=10.5836;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=25.00;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:3600,390,0
chrXII	795919	.	C	T	2038	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.91;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2071,213,0
chrXII	795999	.	A	G	1792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=83;Dels=0.00;FS=2.986;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.728;QD=21.59;ReadPosRankSum=2.331;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1825,192,0
chrXII	796025	.	A	T	1967	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.8991;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=21.86;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2000,207,0
chrXII	796042	.	C	T	1795	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1151;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.63;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1828,186,0
chrXII	796074	.	G	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=16.77;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,83:88:99:1509,162,0
chrXII	796093	.	G	A	1562	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.16;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1595,168,0
chrXII	796132	.	T	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.28;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1615,168,0
chrXII	796232	.	T	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.81;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1128,120,0
chrXII	796362	.	C	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.6436;MLEAC=2;MLEAF=1.00;MQ=50.99;MQ0=0;QD=19.11;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1562,165,0
chrXII	796413	.	T	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=15.35;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1169,120,0
chrXII	796574	.	T	C	640	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=15.61;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:72:673,72,0
chrXII	796621	.	A	T	890	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.80;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:923,93,0
chrXII	796703	.	C	T	1189	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=22.43;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1222,126,0
chrXII	796778	.	G	C	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.38;MQ0=0;QD=0.61;SB=-2.977e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:6:57,6,0
chrXII	796782	.	C	T	109.13	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.19;MQ0=0;QD=2.54;SB=-2.714e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:18:142,18,0
chrXII	796814	.	G	C	604	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=12.58;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:69:637,69,0
chrXII	796855	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=21.30;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1375,150,0
chrXII	796901	.	T	A	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;MQRankSum=1.448;QD=25.02;ReadPosRankSum=1.675;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1559,162,0
chrXII	797023	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.779;DP=76;Dels=0.00;FS=27.316;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=3.222;QD=22.70;ReadPosRankSum=1.477;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:4,72:76:99:1758,189,0
chrXII	828903	.	C	T	1792	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.97;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1825,189,0
chrXII	853556	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.35;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1421,153,0
chrXII	863688	.	C	T	779	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=19.9945;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.26;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:812,84,0
chrXII	864159	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.71;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1669,171,0
chrXII	864291	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.64;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1754,189,0
chrXII	864558	.	A	G	2270	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.15;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2303,246,0
chrXII	864606	.	G	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.35;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1498,165,0
chrXII	864723	.	G	A	3679.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.28;SB=-1.771e+03	GT:AD:DP:GQ:PL	1/1:0,158:158:99:3679,379,0
chrXII	864768	.	C	T	3837.01	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=10.6499;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.98;SB=-1.843e+03	GT:AD:DP:GQ:PL	1/1:0,166:167:99:3837,411,0
chrXII	864999	.	G	T	2594	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.0825;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.94;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2627,279,0
chrXII	865086	.	T	C	2157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;DP=93;Dels=0.00;FS=7.614;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.225;QD=23.19;ReadPosRankSum=2.291;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2190,234,0
chrXII	865455	.	T	C	2460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.7002;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.034;QD=23.88;ReadPosRankSum=1.698;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,101:103:99:2493,261,0
chrXII	865557	.	G	A	2011	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.11;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2044,210,0
chrXII	865736	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.586;DP=95;Dels=0.00;FS=5.309;HaplotypeScore=8.5391;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.138;QD=19.68;ReadPosRankSum=2.139;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:3,92:95:99:1903,201,0
chrXII	865827	.	C	T	1812	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=18.30;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1845,201,0
chrXII	865848	.	G	C	1761	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=19.14;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1794,195,0
chrXII	866082	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=72;Dels=0.00;FS=3.002;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.129;QD=20.75;ReadPosRankSum=2.381;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:1527,165,0
chrXII	866118	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.35;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:981,108,0
chrXII	866256	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=23.08;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1533,156,0
chrXII	866286	.	C	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.49;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1257,138,0
chrXII	866301	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=16.69;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1151,126,0
chrXII	866559	.	T	C	2162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.471;QD=23.00;ReadPosRankSum=1.695;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:2195,234,0
chrXII	866961	.	G	A	306	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.86;SB=-8.599e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:36:339,36,0
chrXII	867118	.	A	T	416	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.91;SB=-6.622e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:48:449,48,0
chrXII	868454	.	T	C	1821	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.17;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1854,198,0
chrXII	868519	.	T	A	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=6.990;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.675;QD=19.46;ReadPosRankSum=1.617;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1220,129,0
chrXII	868618	.	G	A	939	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:972,99,0
chrXII	868667	.	G	A	1168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=4.607;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.333;QD=22.46;ReadPosRankSum=0.400;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1201,123,0
chrXII	868737	.	G	A	1100	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9646;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.75;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1133,126,0
chrXII	869190	.	A	G	2834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=123;Dels=0.00;FS=4.878;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.084;QD=23.04;ReadPosRankSum=1.704;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2867,306,0
chrXII	869308	.	T	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.77;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1591,162,0
chrXII	869349	.	G	A	1788	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.19;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1821,198,0
chrXII	869370	.	G	A	1838	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=17.18;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:1871,201,0
chrXII	870167	.	G	C	2029	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.05;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2062,222,0
chrXII	870213	.	G	A	1785	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0657;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.77;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1818,195,0
chrXII	870633	.	A	G	2240	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.54;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2273,237,0
chrXII	870645	.	T	A	2111	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2707;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.50;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2144,228,0
chrXII	870924	.	A	G	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-0.084;QD=20.38;ReadPosRankSum=1.648;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1704,183,0
chrXII	870969	.	A	G	1553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=87;Dels=0.00;FS=3.166;HaplotypeScore=8.9581;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.447;QD=17.85;ReadPosRankSum=1.691;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:2,84:87:99:1586,171,0
chrXII	872180	.	T	C	1973	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.94;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2006,213,0
chrXII	872401	.	A	G	1944	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.71;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1977,216,0
chrXII	873300	.	T	C	1835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=76;Dels=0.00;FS=2.576;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.016;QD=24.14;ReadPosRankSum=2.320;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1868,195,0
chrXII	873708	.	C	G	953	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.69;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:99:986,111,0
chrXII	874112	.	G	A	1951	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7534;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.68;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1984,207,0
chrXII	874247	.	A	G	1037	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=15.25;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1070,114,0
chrXII	874259	.	T	A	995	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.58;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1028,105,0
chrXII	874373	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=20.28;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1250,129,0
chrXII	874379	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=17.73;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1168,123,0
chrXII	874397	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=16.21;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1249,129,0
chrXII	874433	.	C	T	1659	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=17.10;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1692,177,0
chrXII	874541	.	C	T	2468	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.6565;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.28;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2501,264,0
chrXII	875066	.	G	C	335	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=14.57;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:39:368,39,0
chrXII	875233	.	C	T	525	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=14.58;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,35:36:57:558,57,0
chrXII	876714	.	A	G	1712	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.38;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1745,183,0
chrXII	876756	.	G	A	1705	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.37;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1738,180,0
chrXII	876759	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=6.725;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.572;QD=19.08;ReadPosRankSum=2.391;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1636,174,0
chrXII	876842	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=13.3704;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.63;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,78:83:99:1828,189,0
chrXII	877274	.	T	A	2166	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=22.8280;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.80;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2199,222,0
chrXII	877539	.	T	A	1003	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=20.06;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1036,108,0
chrXII	877560	.	T	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=20.65;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1396,147,0
chrXII	877606	.	C	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=14.28;SB=-1.451e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1590,171,0
chrXII	877607	.	T	A	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=-0.652;QD=14.84;ReadPosRankSum=1.669;SB=-1.471e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:1665,174,0
chrXII	877838	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=19.88;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1504,153,0
chrXII	877839	.	C	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=19.86;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1483,156,0
chrXII	877966	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=16.90;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1588,165,0
chrXII	878238	.	T	C	2113	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.34;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2146,228,0
chrXII	878274	.	A	G	1818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;DP=88;Dels=0.00;FS=6.031;HaplotypeScore=7.9593;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.826;QD=20.66;ReadPosRankSum=2.919;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:3,84:88:99:1851,198,0
chrXII	878767	.	G	A	1339	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.60;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1372,144,0
chrXII	878842	.	A	G	1180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.948;QD=21.45;ReadPosRankSum=1.667;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:1,52:55:99:1213,129,0
chrXII	878875	.	G	A	1071	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.34;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1104,114,0
chrXII	879328	.	A	G	2198	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2231,240,0
chrXII	879756	.	C	T	2392	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.41;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2425,249,0
chrXII	879813	.	C	T	2549	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.51;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2582,261,0
chrXII	880251	.	C	A	1123	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.42;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1156,117,0
chrXII	880276	.	G	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=17.75;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1222,126,0
chrXII	880569	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=17.26;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1345,141,0
chrXII	880574	.	T	G	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;MQRankSum=-0.973;QD=17.78;ReadPosRankSum=1.685;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1331,144,0
chrXII	880934	.	A	G	1542	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=19.27;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1575,168,0
chrXII	880937	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=19.88;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1564,162,0
chrXII	881079	.	G	A	2017	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7202;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.01;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2050,210,0
chrXII	881118	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.32;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1642,174,0
chrXII	881283	.	C	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=20.39;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1134,120,0
chrXII	881367	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.49;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1180,123,0
chrXII	881541	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.079;QD=24.61;ReadPosRankSum=1.654;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1116,117,0
chrXII	881789	.	C	A	525	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.19;SB=-3.501e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:57:558,57,0
chrXII	881891	.	G	A	804	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:87:837,87,0
chrXII	881897	.	C	T	767	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=20.73;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:37:84:800,84,0
chrXII	882523	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.99;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,79:83:99:1775,192,0
chrXII	882930	.	G	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=26.19;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1421,144,0
chrXII	883237	.	T	C	1209	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=21.21;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1242,132,0
chrXII	883249	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.92;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1393,147,0
chrXII	883429	.	T	C	1694	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.00;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1727,180,0
chrXII	883499	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.07;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1654,177,0
chrXII	883503	.	T	C	1553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=-0.495;QD=17.85;ReadPosRankSum=1.691;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,83:87:99:1586,168,0
chrXII	884846	.	C	G	1543	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=18.37;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1576,168,0
chrXII	885146	.	G	T	2918	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=21.61;SB=-1.682e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2951,309,0
chrXII	885190	.	A	T	2993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=141;Dels=0.00;FS=3.468;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-0.619;QD=21.23;ReadPosRankSum=1.707;SB=-1.549e+03	GT:AD:DP:GQ:PL	1/1:1,140:141:99:3026,324,0
chrXII	885216	.	T	C	2849	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=21.42;SB=-1.466e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2882,306,0
chrXII	885222	.	C	T	2420	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=21.61;SB=-1.472e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2453,255,0
chrXII	885248	.	T	A	2029	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=18.28;SB=-1.451e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2062,216,0
chrXII	885268	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=94;Dels=0.00;FS=5.691;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=-1.570;QD=15.30;ReadPosRankSum=2.925;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:3,91:94:99:1471,156,0
chrXII	885303	.	A	G	1668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.567;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=0.605;QD=20.10;ReadPosRankSum=1.690;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1701,180,0
chrXII	885458	.	C	T	2243	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2276,237,0
chrXII	885539	.	A	G	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.039;QD=21.39;ReadPosRankSum=1.693;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1915,201,0
chrXII	885745	.	T	C	1905	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=11.1633;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.71;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1938,207,0
chrXII	885989	.	T	C	1632	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.90;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1665,180,0
chrXII	886502	.	C	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.80;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1401,153,0
chrXII	886589	.	T	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=23.34;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1620,168,0
chrXII	886649	.	A	G	1423	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.72;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1456,153,0
chrXII	886772	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.71;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1906,204,0
chrXII	886838	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=22.62;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1775,186,0
chrXII	886844	.	G	A	1757	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.43;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1790,180,0
chrXII	886881	.	G	C	1162	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.34;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1195,123,0
chrXII	886902	.	C	T	695	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=13.63;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:75:728,75,0
chrXII	887067	.	T	C	1659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;MQRankSum=-0.983;QD=21.83;ReadPosRankSum=1.685;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,73:76:99:1692,180,0
chrXII	887300	.	C	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.75;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1077,111,0
chrXII	887306	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.15;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1027,108,0
chrXII	887672	.	T	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.15;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1144,123,0
chrXII	888137	.	G	A	2082	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.08;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2115,228,0
chrXII	888182	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=2.967;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.504;QD=21.56;ReadPosRankSum=2.381;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1564,174,0
chrXII	888260	.	C	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.24;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1753,177,0
chrXII	888362	.	G	C	1635	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=22.40;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1668,180,0
chrXII	888653	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.47;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1727,189,0
chrXII	888676	.	T	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=18.81;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1425,153,0
chrXII	888713	.	A	G	1066	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.6163;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=15.01;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1099,117,0
chrXII	888715	.	T	A	1004	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.075;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;MQRankSum=-1.582;QD=14.55;ReadPosRankSum=1.682;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1037,114,0
chrXII	888722	.	T	A	946	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=6.4099;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=13.91;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:979,105,0
chrXII	888875	.	A	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.54;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1726,183,0
chrXII	889106	.	C	T	1943	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=23.70;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1976,201,0
chrXII	889361	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.51;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1457,150,0
chrXII	889388	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.129;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=0.375;QD=20.16;ReadPosRankSum=1.685;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1525,162,0
chrXII	889415	.	T	C	1636	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.760;QD=19.95;ReadPosRankSum=1.690;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1669,174,0
chrXII	889427	.	G	A	1786	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.41;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1819,189,0
chrXII	889750	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.14;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1564,162,0
chrXII	890158	.	A	G	1709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.890;QD=23.09;ReadPosRankSum=1.685;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1742,183,0
chrXII	890224	.	A	G	1704	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.04;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1737,183,0
chrXII	890351	.	G	C	1378	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.88;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1411,153,0
chrXII	890548	.	C	T	2329	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.39;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2362,252,0
chrXII	890591	.	A	G	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.222;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.000;QD=21.79;ReadPosRankSum=1.650;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1885,201,0
chrXII	891003	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.29;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1549,165,0
chrXII	891197	.	A	G	1194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.9414;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.453;QD=19.26;ReadPosRankSum=1.676;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1227,132,0
chrXII	891299	.	T	G	1243	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.20;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1276,135,0
chrXII	891320	.	A	G	980	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.8759;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.15;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1013,111,0
chrXII	891323	.	C	T	946	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=16.60;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:979,102,0
chrXII	891452	.	C	T	2079	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.88;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2112,219,0
chrXII	891875	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=21.16;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1937,207,0
chrXII	891881	.	G	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.09;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1901,198,0
chrXII	892172	.	T	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.08;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2078,231,0
chrXII	892383	.	A	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.56;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1287,138,0
chrXII	892436	.	C	T	1910	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.46;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1943,204,0
chrXII	892496	.	A	G	1917	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=16.53;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:1950,210,0
chrXII	892499	.	T	C	1838	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=15.58;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,114:118:99:1871,204,0
chrXII	892508	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.753;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-1.103;QD=15.16;ReadPosRankSum=2.403;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:1640,171,0
chrXII	893140	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=-0.241;QD=19.29;ReadPosRankSum=1.684;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1441,150,0
chrXII	893372	.	C	T	2310	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.81;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2343,243,0
chrXII	893382	.	G	A	2127	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=21.70;SB=-1.391e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2160,219,0
chrXII	893396	.	G	A	2108	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.4999;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=19.52;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2141,222,0
chrXII	893440	.	T	A	1790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7964;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=0.306;QD=17.55;ReadPosRankSum=1.630;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1823,186,0
chrXII	893453	.	A	T	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=4.677;HaplotypeScore=3.6543;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.895;QD=16.77;ReadPosRankSum=1.618;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1559,159,0
chrXII	893464	.	T	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4251;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=17.52;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1575,162,0
chrXII	893651	.	T	C	1935	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.60;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1968,210,0
chrXII	893936	.	A	G	1697	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.95;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1730,180,0
chrXII	894104	.	T	A	1474	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.512;QD=20.76;ReadPosRankSum=1.683;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1507,153,0
chrXII	894452	.	T	C	1343	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1376,144,0
chrXII	894680	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=4.771;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.516;QD=19.78;ReadPosRankSum=1.516;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:1002,111,0
chrXII	894791	.	C	G	1019	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.68;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1052,111,0
chrXII	894953	.	G	A	1385	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.79;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1418,156,0
chrXII	895061	.	C	T	1882	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.5997;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.67;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1915,198,0
chrXII	895451	.	C	T	2407	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.7188;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.71;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2440,261,0
chrXII	896189	.	C	T	2049	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;DP=94;Dels=0.00;FS=3.499;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=1.658;QD=21.80;ReadPosRankSum=1.695;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2082,222,0
chrXII	896197	.	A	G	2143	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=21.43;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2176,231,0
chrXII	897689	.	T	C	1961	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.07;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1994,210,0
chrXII	897975	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.23;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1520,159,0
chrXII	898044	.	G	A	1177	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=18.11;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1210,129,0
chrXII	898095	.	C	T	2137	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=23.23;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2170,228,0
chrXII	898119	.	G	A	2339	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=21.26;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2372,243,0
chrXII	898209	.	G	A	971	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=17.34;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1004,108,0
chrXII	898212	.	A	G	975	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=17.41;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1008,108,0
chrXII	898520	.	C	T	2456	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.5694;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.93;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2489,267,0
chrXII	899119	.	A	G	1611	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.01;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1644,168,0
chrXII	899154	.	T	C	1899	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=71.7891;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.58;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1932,204,0
chrXII	899303	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1137,120,0
chrXII	899462	.	A	C	1839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=80;Dels=0.00;FS=14.319;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.911;QD=22.99;ReadPosRankSum=2.911;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:3,76:80:99:1872,204,0
chrXII	899557	.	C	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0957;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.00;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1041,111,0
chrXII	899580	.	C	G	866	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=19.24;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:96:899,96,0
chrXII	899679	.	C	T	732	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.18;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:78:765,78,0
chrXII	899955	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-1.428;QD=19.37;ReadPosRankSum=1.672;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1137,123,0
chrXII	899979	.	G	A	1147	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=18.80;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1180,132,0
chrXII	900280	.	T	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.62;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1289,141,0
chrXII	900312	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.336;QD=20.18;ReadPosRankSum=1.681;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1405,150,0
chrXII	900812	.	C	G	1438	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.54;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1471,156,0
chrXII	900885	.	A	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.00;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1440,156,0
chrXII	900959	.	T	G	1540	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.01;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1573,168,0
chrXII	901022	.	C	G	1536	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.21;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1569,168,0
chrXII	901179	.	C	T	1138	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.29;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1171,120,0
chrXII	901473	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.9254;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.53;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1680,180,0
chrXII	901592	.	G	A	837	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.47;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:90:870,90,0
chrXII	901809	.	G	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.66;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1917,198,0
chrXII	901826	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.34;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1696,186,0
chrXII	902330	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.04;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1232,132,0
chrXII	902591	.	G	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.29;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1772,183,0
chrXII	902616	.	T	C	1048	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.39;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1081,117,0
chrXII	902761	.	G	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.70;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1498,150,0
chrXII	902948	.	C	A	1293	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.85;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1326,138,0
chrXII	903127	.	A	T	2641	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.68;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2674,279,0
chrXII	903643	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.16;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1217,129,0
chrXII	903720	.	T	A	1039	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.78;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1072,117,0
chrXII	903957	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=10.092;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=-1.328;QD=19.71;ReadPosRankSum=2.375;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1334,141,0
chrXII	904002	.	C	T	1263	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.70;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1296,138,0
chrXII	904239	.	T	C	3019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.9027;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.410;QD=22.70;ReadPosRankSum=1.679;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,130:133:99:3052,330,0
chrXII	904437	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.79;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1762,183,0
chrXII	904580	.	C	T	3562.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.13;SB=-1.580e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3562,370,0
chrXII	904696	.	A	G	1582	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=25.93;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1615,174,0
chrXII	904915	.	G	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=11.9443;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.40;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1685,180,0
chrXII	905439	.	G	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.31;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1467,159,0
chrXII	905508	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.51;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1407,144,0
chrXII	905606	.	T	A	1116	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.06;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1149,120,0
chrXII	905672	.	T	C	1383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.503;QD=22.31;ReadPosRankSum=1.676;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1416,153,0
chrXII	905691	.	A	G	1331	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.82;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1364,147,0
chrXII	905771	.	A	T	1479	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.83;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1512,156,0
chrXII	905887	.	C	T	1741	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=25.23;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1774,183,0
chrXII	906336	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.43;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1648,171,0
chrXII	906431	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1734,186,0
chrXII	907052	.	G	C	2399	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=24.73;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2432,255,0
chrXII	907076	.	A	G	2114	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.49;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,86:90:99:2147,228,0
chrXII	907910	.	C	T	898	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.88;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:931,99,0
chrXII	908027	.	G	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.03;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1415,150,0
chrXII	908778	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.50;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1328,141,0
chrXII	908785	.	T	A	1223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.747;DP=69;Dels=0.00;FS=5.669;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.866;QD=17.72;ReadPosRankSum=2.897;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1256,129,0
chrXII	908930	.	C	T	1507	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.83;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1540,159,0
chrXII	909231	.	T	G	1855	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.35;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1888,207,0
chrXII	909328	.	T	A	1836	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1869,192,0
chrXII	909639	.	G	A	2250	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.28;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2283,234,0
chrXII	909986	.	C	A	1885	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8347;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.84;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1918,201,0
chrXII	910020	.	G	A	1501	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.30;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1534,159,0
chrXII	910090	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.48;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1022,105,0
chrXII	910292	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.53;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1820,198,0
chrXII	910376	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.38;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1569,159,0
chrXII	910431	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.90;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1252,135,0
chrXII	910517	.	T	A	1350	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.88;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1383,138,0
chrXII	910650	.	A	G	1904	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.40;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1937,210,0
chrXII	910661	.	C	T	1642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.533;QD=21.05;ReadPosRankSum=-0.799;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1675,183,0
chrXII	910890	.	T	C	1397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=5.039;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.370;QD=20.85;ReadPosRankSum=1.577;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1430,153,0
chrXII	911258	.	T	C	1584	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.12;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1617,171,0
chrXII	911387	.	G	T	4648.01	PASS	AC=2;AF=1.00;AN=2;DP=195;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.84;SB=-2.021e+03	GT:AD:DP:GQ:PL	1/1:0,192:195:99:4648,484,0
chrXII	911501	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.23;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1360,147,0
chrXII	911510	.	T	C	1066	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.07;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1099,120,0
chrXII	912351	.	C	T	1945	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.37;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1978,201,0
chrXII	912364	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=19.52;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1887,201,0
chrXII	912538	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.62;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1356,141,0
chrXII	912718	.	C	G	1829	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.3509;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.10;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1862,198,0
chrXII	912982	.	G	T	997	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=15.83;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1030,111,0
chrXII	913000	.	A	G	769	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=15.08;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:802,87,0
chrXII	913219	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.22;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1002,105,0
chrXII	913342	.	G	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.02;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1276,138,0
chrXII	913431	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=25.46;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1535,162,0
chrXII	913684	.	G	A	1018	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.21;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1051,114,0
chrXII	913801	.	G	A	738	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7469;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=11.71;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:84:771,84,0
chrXII	913906	.	A	G	1507	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.84;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1540,165,0
chrXII	913948	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1325,138,0
chrXII	914086	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.90;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1201,126,0
chrXII	914428	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1239,135,0
chrXII	914959	.	C	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.55;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:66:99:1323,141,0
chrXII	914980	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=22.29;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1504,153,0
chrXII	915051	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0801;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=16.50;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1188,126,0
chrXII	915065	.	A	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=18.16;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1413,153,0
chrXII	915110	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.32;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1773,192,0
chrXII	915461	.	A	T	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=78;Dels=0.00;FS=3.123;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=1.288;QD=21.63;ReadPosRankSum=1.643;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1720,183,0
chrXII	916326	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.6934;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.03;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1395,144,0
chrXII	916338	.	C	T	1353	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.50;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1386,144,0
chrXII	917166	.	G	C	974	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.65;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1007,108,0
chrXII	917305	.	T	C	544	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=16.48;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:60:577,60,0
chrXII	917406	.	C	T	1187	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=17.46;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1220,126,0
chrXII	917418	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.38;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1375,138,0
chrXII	917691	.	G	A	638	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.27;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:671,69,0
chrXII	917724	.	G	A	740	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.76;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:81:773,81,0
chrXII	918048	.	T	C	1085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.516;QD=22.60;ReadPosRankSum=1.660;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1118,117,0
chrXII	918216	.	G	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.04;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1135,117,0
chrXII	918511	.	T	C	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=2.758;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.044;QD=22.41;ReadPosRankSum=2.365;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1355,144,0
chrXII	918570	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.71;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1089,114,0
chrXII	918824	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.70;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1574,168,0
chrXII	919081	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.78;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1945,210,0
chrXII	919173	.	T	G	1171	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=16.26;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1204,132,0
chrXII	919181	.	T	C	1144	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=16.11;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1177,129,0
chrXII	919261	.	T	G	1782	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.48;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1815,192,0
chrXII	919424	.	T	C	3313.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.362;QD=24.54;ReadPosRankSum=1.706;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:1,133:135:99:3313,354,0
chrXII	919648	.	C	T	2482	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=19.86;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2515,258,0
chrXII	920189	.	G	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.80;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1221,129,0
chrXII	920406	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.41;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1446,153,0
chrXII	920433	.	C	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=18.79;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1292,138,0
chrXII	920445	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-1.683;QD=18.47;ReadPosRankSum=1.683;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1326,138,0
chrXII	920484	.	T	C	1062	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=49.89;MQ0=0;QD=15.17;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1095,117,0
chrXII	920502	.	G	A	861	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=13.89;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:96:894,96,0
chrXII	920529	.	A	G	1079	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.35;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1112,120,0
chrXII	920774	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.25;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1457,162,0
chrXII	920946	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.112;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=1.565;QD=21.45;ReadPosRankSum=1.621;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1363,119,0
chrXII	921053	.	A	G	1394	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.13;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1427,153,0
chrXII	921081	.	G	A	1610	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.38;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1643,171,0
chrXII	921316	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.307;QD=22.11;ReadPosRankSum=0.577;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1293,141,0
chrXII	921404	.	A	C	582	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=14.20;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:66:615,66,0
chrXII	921420	.	T	C	561	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.585;QD=11.69;ReadPosRankSum=1.143;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:63:594,63,0
chrXII	921443	.	G	C	610	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=12.98;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:69:643,69,0
chrXII	922026	.	C	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.2567;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.19;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1453,153,0
chrXII	922092	.	A	G	1070	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.58;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1103,120,0
chrXII	922242	.	C	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.02;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1105,117,0
chrXII	922406	.	A	T	1442	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.636;QD=19.75;ReadPosRankSum=1.540;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1475,150,0
chrXII	922517	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.24;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1145,123,0
chrXII	922595	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1103,114,0
chrXII	922882	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.153;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.335;QD=20.65;ReadPosRankSum=1.565;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1334,141,0
chrXII	923234	.	T	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=18.59;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1167,123,0
chrXII	923248	.	G	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.4463;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.36;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1214,123,0
chrXII	923570	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=17.41;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1321,150,0
chrXII	923659	.	C	G	908	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.18;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:941,102,0
chrXII	923885	.	C	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.34;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1907,192,0
chrXII	924128	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.61;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1706,183,0
chrXII	924245	.	A	C	1442	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=70;Dels=0.00;FS=11.108;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.486;QD=20.60;ReadPosRankSum=2.898;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:3,66:70:99:1475,159,0
chrXII	924335	.	T	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.20;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1052,108,0
chrXII	924464	.	G	A	2448	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.31;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2481,258,0
chrXII	924492	.	T	C	2531	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.3061;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=22.20;SB=-1.428e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2564,273,0
chrXII	924534	.	C	G	2352	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.19;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2385,255,0
chrXII	924556	.	T	C	1980	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.06;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:2013,216,0
chrXII	924908	.	A	T	2438	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.00;SB=-1.399e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2471,252,0
chrXII	925036	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.74;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1310,147,0
chrXII	925356	.	C	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.16;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1384,150,0
chrXII	925463	.	C	T	2574	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.78;SB=-1.327e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2607,270,0
chrXII	925665	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.29;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1222,132,0
chrXII	925788	.	T	C	3025	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.74;SB=-1.534e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3058,330,0
chrXII	925840	.	G	A	2566	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=26.18;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2599,264,0
chrXII	925971	.	A	G	1707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=81;Dels=0.00;FS=7.360;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.472;QD=21.07;ReadPosRankSum=2.359;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1740,186,0
chrXII	926441	.	T	G	2666	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=116;Dels=0.00;FS=5.413;HaplotypeScore=6.8652;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.531;QD=22.98;ReadPosRankSum=2.922;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:3,113:116:99:2699,294,0
chrXII	926623	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.00;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1365,144,0
chrXII	926814	.	A	G	2926	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.75;SB=-1.503e+03	GT:AD:DP:GQ:PL	1/1:0,139:141:99:2959,318,0
chrXII	926836	.	T	C	3209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=161;Dels=0.00;FS=3.653;HaplotypeScore=6.2181;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.736;QD=19.93;ReadPosRankSum=1.710;SB=-1.801e+03	GT:AD:DP:GQ:PL	1/1:1,159:161:99:3242,348,0
chrXII	927424	.	G	A	2254	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.3657;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.73;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2287,234,0
chrXII	927454	.	T	C	1891	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.49;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1924,210,0
chrXII	927499	.	A	C	1736	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=18.47;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1769,189,0
chrXII	927638	.	C	T	1883	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1916,198,0
chrXII	927914	.	G	A	2331	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=23.08;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2364,249,0
chrXII	927946	.	T	C	2531	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=24.34;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2564,273,0
chrXII	928158	.	G	T	1234	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1267,129,0
chrXII	928259	.	A	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.26;MQ0=0;QD=21.01;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1441,150,0
chrXII	928263	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=19.87;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1523,159,0
chrXII	928273	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=18.86;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1598,174,0
chrXII	928276	.	A	T	1649	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=18.95;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1682,174,0
chrXII	928304	.	T	C	1405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=6.824;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;MQRankSum=-0.247;QD=18.25;ReadPosRankSum=1.687;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1438,153,0
chrXII	928330	.	C	G	1349	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.75;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1382,144,0
chrXII	928626	.	C	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.8448;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.03;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:63:99:1484,159,0
chrXII	930728	.	A	G	2322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.580;QD=20.37;ReadPosRankSum=1.641;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2355,249,0
chrXII	932266	.	G	A	1358	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=13.1085;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=18.35;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1391,141,0
chrXII	934129	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.72;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1351,138,0
chrXII	934434	.	C	T	2122	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4196;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.96;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2155,222,0
chrXII	935517	.	C	G	2326	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.54;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2359,249,0
chrXII	936343	.	A	C	1563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.344;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5552;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.723;QD=22.33;ReadPosRankSum=1.181;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1596,165,0
chrXII	937488	.	T	C	1874	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.32;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1907,207,0
chrXII	937855	.	A	G	1561	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6080;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.38;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1594,174,0
chrXII	938134	.	A	G	1336	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.82;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1369,147,0
chrXII	938770	.	C	T	1340	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.6819;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.00;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1373,144,0
chrXII	940926	.	G	T	1115	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=19.56;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1148,120,0
chrXII	941516	.	T	A	1503.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.852;DP=183;Dels=0.00;FS=2.154;HaplotypeScore=30.5271;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=13;MQRankSum=0.387;QD=8.21;ReadPosRankSum=1.462;SB=-2.330e+02	GT:AD:DP:GQ:PL	0/1:69,100:183:99:1533,0,923
chrXII	941517	.	C	T	1555.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;DP=183;Dels=0.00;FS=2.154;HaplotypeScore=30.5271;MLEAC=1;MLEAF=0.500;MQ=28.60;MQ0=13;MQRankSum=-0.262;QD=8.50;ReadPosRankSum=1.368;SB=-2.430e+02	GT:AD:DP:GQ:PL	0/1:68,100:183:99:1585,0,893
chrXII	941803	.	A	G	762	filter	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=26;QD=10.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:14,55:70:84:795,84,0
chrXII	941867	.	C	A	116.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.470;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7643;MLEAC=1;MLEAF=0.500;MQ=23.64;MQ0=28;MQRankSum=-1.102;QD=1.10;ReadPosRankSum=-0.016;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:71,34:105:99:146,0,470
chrXII	941922	.	T	C	89.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.7697;MLEAC=1;MLEAF=0.500;MQ=20.43;MQ0=20;MQRankSum=0.080;QD=1.78;ReadPosRankSum=1.124;SB=-3.053e-03	GT:AD:DP:GQ:PL	0/1:23,23:50:34:119,0,34
chrXII	941924	.	A	C	90.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.42;MQ0=20;MQRankSum=0.271;QD=2.05;ReadPosRankSum=1.820;SB=0.023	GT:AD:DP:GQ:PL	0/1:24,20:44:27:120,0,27
chrXII	941926	.	A	G	101.79	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=18.92;MQ0=21;MQRankSum=0.867;QD=2.31;ReadPosRankSum=1.050;SB=-1.677e+00	GT:AD:DP:GQ:PL	0/1:24,20:44:4:131,0,4
chrXII	941942	.	A	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.354;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=15.53;MQ0=17;MQRankSum=-1.061;QD=0.75;ReadPosRankSum=-0.118;SB=1.45	GT:AD:DP:GQ:PL	1/1:19,9:29:6:53,6,0
chrXII	948265	.	G	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.09;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1719,177,0
chrXII	948612	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.72;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1960,201,0
chrXII	949489	.	C	T	1492	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.94;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1525,156,0
chrXII	950322	.	A	G	745	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.437;DP=70;Dels=0.00;FS=5.000;HaplotypeScore=9.9767;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;MQRankSum=-0.266;QD=10.64;ReadPosRankSum=0.405;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:5,64:70:87:778,87,0
chrXII	950340	.	A	T	49.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=57.3933;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=0;MQRankSum=-1.395;QD=0.69;ReadPosRankSum=1.636;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:9:82,9,0
chrXII	950350	.	T	A	665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.324;DP=66;Dels=0.00;FS=6.279;HaplotypeScore=49.2479;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;MQRankSum=-0.308;QD=10.08;ReadPosRankSum=1.170;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:3,63:66:75:698,75,0
chrXII	950788	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.44;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1062,114,0
chrXII	950793	.	G	A	1067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=-0.231;QD=17.49;ReadPosRankSum=0.115;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1100,114,0
chrXII	950859	.	C	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=15.17;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1292,144,0
chrXII	951032	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=23.39;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1483,153,0
chrXII	951088	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.86;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1336,147,0
chrXII	951524	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.320;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;MQRankSum=0.783;QD=18.85;ReadPosRankSum=1.685;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1409,156,0
chrXII	951540	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.494;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=0.547;QD=18.05;ReadPosRankSum=0.547;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1423,150,0
chrXII	951629	.	A	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.53;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1777,186,0
chrXII	952187	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1505,156,0
chrXII	952262	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.44;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1791,192,0
chrXII	952346	.	G	A	1364	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.31;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1397,156,0
chrXII	952469	.	C	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.95;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1701,183,0
chrXII	953016	.	T	C	1809	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.54;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1842,198,0
chrXII	953059	.	G	T	2026	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9499;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.56;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:2059,207,0
chrXII	953884	.	G	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1748,189,0
chrXII	954049	.	G	A	781	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.75;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:87:814,87,0
chrXII	954167	.	G	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.79;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1755,192,0
chrXII	954228	.	T	C	1747	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.40;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1780,183,0
chrXII	954459	.	T	A	794	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.89;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:827,84,0
chrXII	954609	.	G	C	1442	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.25;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1475,162,0
chrXII	954827	.	T	C	1328	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1361,141,0
chrXII	954897	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.07;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1333,141,0
chrXII	955168	.	A	G	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.907;QD=19.58;ReadPosRankSum=0.637;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1286,138,0
chrXII	957115	.	C	T	1336	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.65;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1369,144,0
chrXII	957451	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.18;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1299,132,0
chrXII	957662	.	A	G	1069	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.82;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1102,117,0
chrXII	957702	.	C	T	807	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.68;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:90:840,90,0
chrXII	958009	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.111;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.060;QD=19.54;ReadPosRankSum=1.525;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1342,147,0
chrXII	958253	.	G	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8625;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.52;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1677,177,0
chrXII	958385	.	C	A	3447.01	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.01;FS=0.000;HaplotypeScore=12.2151;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=25.53;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:3447,357,0
chrXII	958640	.	T	C	2596	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.6684;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.63;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2629,279,0
chrXII	959546	.	G	C	1839	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1872,198,0
chrXII	959674	.	A	G	1395	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=17.44;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1428,153,0
chrXII	959679	.	C	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.49;MQ0=0;QD=17.79;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1456,150,0
chrXII	959687	.	A	G	1245	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=15.18;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1278,138,0
chrXII	959702	.	A	C	1121	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=13.19;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1154,126,0
chrXII	960118	.	G	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=19.91;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1506,156,0
chrXII	960131	.	C	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=19.81;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1459,156,0
chrXII	961177	.	G	T	802	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.65;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:835,87,0
chrXII	961196	.	A	T	879	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.94;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:912,96,0
chrXII	962683	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.01;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1759,180,0
chrXII	962897	.	C	G	2194	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.38;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2227,240,0
chrXII	963090	.	G	A	1882	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.0662;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.27;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:1915,198,0
chrXII	963280	.	A	G	2498	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.99;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2531,270,0
chrXII	963346	.	G	A	2207	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.63;SB=-1.399e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2240,228,0
chrXII	963347	.	G	A	2192	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=20.30;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2225,228,0
chrXII	963364	.	C	G	1976	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=18.82;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2009,210,0
chrXII	963392	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=93;Dels=0.00;FS=3.006;HaplotypeScore=6.2125;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=-0.147;QD=17.28;ReadPosRankSum=2.236;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:2,90:93:99:1640,174,0
chrXII	963469	.	A	G	2271	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.26;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2304,246,0
chrXII	963501	.	C	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.04;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1857,192,0
chrXII	963610	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=14.3761;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=16.57;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1375,144,0
chrXII	964591	.	T	G	1566	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.09;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1599,171,0
chrXII	965342	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=7.6469;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.74;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1033,111,0
chrXII	965658	.	G	A	1072	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.14;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1105,114,0
chrXII	965836	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=23.48;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1606,165,0
chrXII	965865	.	G	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.72;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1336,144,0
chrXII	966217	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=18.46;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1731,183,0
chrXII	966218	.	G	A	1642	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=17.85;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1675,183,0
chrXII	966476	.	T	A	2722	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.26;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2755,291,0
chrXII	966833	.	G	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=16.92;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:65:99:1133,120,0
chrXII	966841	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=17.47;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1046,114,0
chrXII	967075	.	C	G	1692	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.69;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1725,186,0
chrXII	967096	.	A	G	1522	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.74;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1555,165,0
chrXII	967268	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=24.00;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1137,123,0
chrXII	967302	.	T	C	718	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.94;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:751,78,0
chrXII	967311	.	C	T	764	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.59;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:797,81,0
chrXII	967333	.	C	T	790	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.75;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:823,84,0
chrXII	967387	.	G	A	1302	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.07;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1335,138,0
chrXII	967945	.	C	G	2151	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.13;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2184,234,0
chrXII	968009	.	A	C	1557	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=23.95;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1590,168,0
chrXII	968191	.	T	C	2222	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.67;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2255,240,0
chrXII	968208	.	C	T	2384	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=22.28;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2417,249,0
chrXII	968379	.	C	T	1955	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.22;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1988,207,0
chrXII	968392	.	G	A	1583	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.85;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1616,165,0
chrXII	968426	.	A	G	1594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.713;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=1.175;QD=18.32;ReadPosRankSum=1.653;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1627,177,0
chrXII	968701	.	G	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=17.73;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1221,126,0
chrXII	968702	.	C	A	1207	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=18.57;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1240,126,0
chrXII	968735	.	A	G	1558	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=17.51;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1591,171,0
chrXII	969370	.	C	T	2145	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.06;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2178,231,0
chrXII	969880	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.7520;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1603,171,0
chrXII	970024	.	A	G	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.105;QD=19.44;ReadPosRankSum=1.627;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,65:68:99:1355,147,0
chrXII	970693	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.82;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1653,174,0
chrXII	971617	.	G	A	2325	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.83;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2358,243,0
chrXII	971844	.	T	A	2671	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.03;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2704,291,0
chrXII	972375	.	C	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.57;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1107,114,0
chrXII	972416	.	T	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.38;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2067,210,0
chrXII	973261	.	G	A	2476	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.91;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2509,267,0
chrXII	973354	.	C	G	1805	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.85;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1838,198,0
chrXII	973931	.	A	G	1936	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=23.61;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1969,213,0
chrXII	974297	.	A	G	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=80;Dels=0.00;FS=13.087;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.011;QD=22.87;ReadPosRankSum=3.298;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:4,75:80:99:1863,198,0
chrXII	974324	.	G	A	1679	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.69;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1712,177,0
chrXII	974513	.	G	A	967	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=23.02;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1000,102,0
chrXII	974557	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.9752;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.34;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1000,105,0
chrXII	974574	.	A	G	1066	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.70;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1099,120,0
chrXII	974771	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.472;QD=22.26;ReadPosRankSum=2.360;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:2,53:57:99:1302,138,0
chrXII	974945	.	G	A	2277	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=25.58;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2310,249,0
chrXII	974978	.	C	T	2257	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=24.80;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2290,240,0
chrXII	975098	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.75;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1139,123,0
chrXII	975587	.	T	A	2350	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;DP=131;Dels=0.00;FS=8.247;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;MQRankSum=0.666;QD=17.94;ReadPosRankSum=2.224;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:2,129:131:99:2383,264,0
chrXII	975592	.	T	A	2260	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=131;Dels=0.01;FS=8.354;HaplotypeScore=7.4156;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=0;MQRankSum=-1.220;QD=17.25;ReadPosRankSum=2.374;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:2,128:130:99:2293,252,0
chrXII	975595	.	T	C	2288	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DP=129;Dels=0.00;FS=4.116;HaplotypeScore=7.4156;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;MQRankSum=-1.464;QD=17.74;ReadPosRankSum=1.490;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2321,252,0
chrXII	975607	.	A	G	2151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=137;Dels=0.00;FS=6.060;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;MQRankSum=-1.434;QD=15.70;ReadPosRankSum=2.949;SB=-1.687e+03	GT:AD:DP:GQ:PL	1/1:3,134:137:99:2184,231,0
chrXII	975626	.	G	C	2077	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;QD=14.32;SB=-1.764e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:2110,228,0
chrXII	975647	.	G	A	2093	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=13.50;SB=-1.904e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:2126,225,0
chrXII	975652	.	C	T	1814	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=12.42;SB=-1.911e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:1847,195,0
chrXII	975664	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=11.10;SB=-1.722e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:1509,156,0
chrXII	975673	.	T	C	1211	SnpCluster	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=10.35;SB=-1.520e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1244,132,0
chrXII	975675	.	G	A	1221	SnpCluster	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;QD=10.44;SB=-1.530e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1254,132,0
chrXII	975681	.	G	A	995	SnpCluster	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.72;MQ0=0;QD=9.05;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1028,108,0
chrXII	975753	.	G	A	483	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=14.21;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:54:516,54,0
chrXII	975763	.	A	G	515	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=16.61;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:548,57,0
chrXII	975766	.	T	C	538	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=15.82;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:63:571,63,0
chrXII	975786	.	T	A	738	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.95;SB=-1.260e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:771,81,0
chrXII	975878	.	T	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=36.83;MQ0=0;QD=21.59;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1674,177,0
chrXII	975883	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-1.299;QD=21.83;ReadPosRankSum=2.384;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1670,174,0
chrXII	975964	.	T	G	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=52;Dels=0.00;FS=4.685;HaplotypeScore=7.3052;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;MQRankSum=1.178;QD=18.00;ReadPosRankSum=1.663;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,49:52:99:969,105,0
chrXII	975971	.	A	G	722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=36;Dels=0.03;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;MQRankSum=0.644;QD=20.06;ReadPosRankSum=1.634;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:81:755,81,0
chrXII	976087	.	T	C	343	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.47;MQ0=0;QD=15.59;SB=-7.059e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:42:376,42,0
chrXII	976189	.	C	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=25.62;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1391,144,0
chrXII	976224	.	A	T	733	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.23;MQ0=0;QD=25.28;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:81:766,81,0
chrXII	981725	.	G	A	108.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=3.28;SB=-8.827e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:15:141,15,0
chrXII	981730	.	C	T	203.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;QD=5.64;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:27:236,27,0
chrXII	981731	.	G	A	192.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=0;QD=5.19;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,35:37:24:225,24,0
chrXII	981757	.	T	C	904	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=16.44;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:937,96,0
chrXII	981795	.	A	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=22.00;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1441,150,0
chrXII	981833	.	C	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.07;MQ0=0;QD=23.75;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1767,183,0
chrXII	981841	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=19.17;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,75:82:99:1605,177,0
chrXII	981883	.	G	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=22.80;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2017,210,0
chrXII	981920	.	G	T	1962	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=44.32;MQ0=0;QD=22.81;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1995,213,0
chrXII	981931	.	C	T	1890	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.86;MQ0=0;QD=24.55;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1923,204,0
chrXII	981937	.	T	C	1495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;MQRankSum=-1.370;QD=22.31;ReadPosRankSum=1.681;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1528,168,0
chrXII	982153	.	T	C	1157	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=18.08;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1190,126,0
chrXII	982182	.	T	A	1505	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=15.84;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1538,162,0
chrXII	982219	.	T	A	1781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=4.210;HaplotypeScore=97.1168;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=-1.433;QD=15.35;ReadPosRankSum=1.702;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:1814,186,0
chrXII	982222	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.366;DP=116;Dels=0.00;FS=5.259;HaplotypeScore=101.7715;MLEAC=2;MLEAF=1.00;MQ=47.82;MQ0=0;MQRankSum=-2.038;QD=14.75;ReadPosRankSum=3.381;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:4,111:116:99:1744,186,0
chrXII	982306	.	G	A	1842	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.81;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1875,204,0
chrXII	982307	.	A	G	1843	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.20;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,92:96:99:1876,207,0
chrXII	982537	.	A	C	1728	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.854;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=1.243;QD=20.33;ReadPosRankSum=1.691;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1761,183,0
chrXII	982541	.	A	C	1684	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.58;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1717,183,0
chrXII	982870	.	A	T	2158	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.58;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2191,225,0
chrXII	982920	.	T	C	2114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.098;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.1729;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.014;QD=22.98;ReadPosRankSum=2.396;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2147,204,0
chrXII	982986	.	C	A	1702	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.26;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1735,180,0
chrXII	983190	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.82;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1553,159,0
chrXII	984003	.	A	G	1100	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.91;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1133,120,0
chrXII	984579	.	T	C	1779	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.72;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1812,195,0
chrXII	984639	.	G	A	1805	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.99;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1838,192,0
chrXII	985254	.	C	G	1624	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.95;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1657,180,0
chrXII	985307	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.47;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1252,135,0
chrXII	985608	.	G	T	2314	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.00;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2347,240,0
chrXII	986295	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.376;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.797;QD=20.33;ReadPosRankSum=1.677;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1314,144,0
chrXII	986346	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.03;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2106,219,0
chrXII	986469	.	T	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.87;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1703,180,0
chrXII	986481	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=19.30;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1500,165,0
chrXII	986511	.	C	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2401;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=20.76;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1777,186,0
chrXII	986704	.	C	T	2061	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.69;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2094,216,0
chrXII	986998	.	A	G	2061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3261;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;MQRankSum=0.369;QD=21.93;ReadPosRankSum=1.658;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2094,222,0
chrXII	986999	.	T	C	2085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=95;Dels=0.00;FS=7.391;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.305;QD=21.95;ReadPosRankSum=2.397;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:2,91:95:99:2118,222,0
chrXII	987115	.	A	G	2645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.785;QD=20.19;ReadPosRankSum=1.705;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,127:131:99:2678,288,0
chrXII	987293	.	T	C	2324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.0813;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.096;QD=21.13;ReadPosRankSum=1.700;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:1,107:110:99:2357,255,0
chrXII	987375	.	A	G	1376	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=14.6641;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.11;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1409,150,0
chrXII	987999	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.03;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1395,144,0
chrXII	988580	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.05;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1356,144,0
chrXII	989108	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.25;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1137,120,0
chrXII	989610	.	G	A	1695	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.2720;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.30;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1728,177,0
chrXII	989828	.	A	G	883	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=16.66;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:916,102,0
chrXII	989831	.	C	T	920	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=16.14;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:953,99,0
chrXII	989846	.	C	T	1011	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.5917;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=17.14;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1044,117,0
chrXII	990107	.	T	C	1674	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.93;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1707,183,0
chrXII	990158	.	T	C	2091	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=24.89;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:2124,228,0
chrXII	990547	.	A	G	3014	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=23.01;SB=-1.739e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:3047,327,0
chrXII	990848	.	A	G	2199	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=21.77;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2232,240,0
chrXII	990875	.	C	T	2391	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=22.56;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2424,252,0
chrXII	990920	.	G	T	1982	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.27;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2015,204,0
chrXII	991134	.	C	T	1499	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.82;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1532,165,0
chrXII	991373	.	A	G	1051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=6.646;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.898;QD=20.61;ReadPosRankSum=2.354;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:1084,117,0
chrXII	991553	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.61;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1548,171,0
chrXII	991895	.	T	C	931	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.00;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:964,105,0
chrXII	992321	.	C	T	742	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.03;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:775,81,0
chrXII	992429	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1709,177,0
chrXII	992572	.	G	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=16.95;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1084,111,0
chrXII	992591	.	G	A	1056	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=15.76;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1089,117,0
chrXII	992595	.	T	C	1003	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;QD=14.75;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1036,111,0
chrXII	992601	.	A	C	974	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=14.54;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1007,108,0
chrXII	992662	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.32;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1407,147,0
chrXII	992940	.	G	T	1261	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=25.22;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1294,135,0
chrXII	992983	.	C	T	1680	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.46;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1713,186,0
chrXII	992990	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=93;Dels=0.00;FS=3.039;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.084;QD=17.99;ReadPosRankSum=2.396;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:2,90:93:99:1706,183,0
chrXII	993389	.	G	T	2694	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=24.27;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2727,273,0
chrXII	993707	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.07;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1666,171,0
chrXII	993808	.	G	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=24.14;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1916,198,0
chrXII	994078	.	C	T	872	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.76;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:905,96,0
chrXII	994177	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.81;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1816,198,0
chrXII	994215	.	G	A	1822	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.19;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1855,195,0
chrXII	994411	.	A	G	1059	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.61;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1092,117,0
chrXII	994453	.	T	C	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=63;Dels=0.00;FS=2.691;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=1.705;QD=22.79;ReadPosRankSum=2.372;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1469,156,0
chrXII	994520	.	T	C	2178	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=1.576;QD=24.47;ReadPosRankSum=1.654;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2211,231,0
chrXII	994820	.	C	T	1567	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=21.47;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1600,165,0
chrXII	994873	.	G	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=21.17;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1917,201,0
chrXII	994876	.	T	A	1836	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=20.86;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1869,195,0
chrXII	994933	.	A	G	1825	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=18.81;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1858,195,0
chrXII	994942	.	G	A	1779	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=18.53;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1812,195,0
chrXII	995272	.	T	C	1836	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.509;HaplotypeScore=9.5856;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.398;QD=22.12;ReadPosRankSum=1.690;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1869,204,0
chrXII	995326	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=23.26;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1801,186,0
chrXII	995575	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.60;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1683,171,0
chrXII	995599	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.10;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1362,144,0
chrXII	995857	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.87;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1497,159,0
chrXII	996068	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.69;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1539,162,0
chrXII	996244	.	G	A	1263	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.70;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1296,132,0
chrXII	996556	.	A	G	1587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=3.912;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.650;QD=24.42;ReadPosRankSum=1.678;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1620,174,0
chrXII	996739	.	A	G	1774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=2.956;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.411;QD=21.37;ReadPosRankSum=2.391;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1807,192,0
chrXII	997285	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.89;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1979,204,0
chrXII	997480	.	A	G	2298	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.31;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2331,246,0
chrXII	997535	.	C	T	1786	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.63;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1819,189,0
chrXII	997556	.	T	C	1560	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=18.14;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1593,171,0
chrXII	998338	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.20;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1742,183,0
chrXII	998377	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.23;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1291,141,0
chrXII	998515	.	A	T	1288	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.30;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1321,138,0
chrXII	998854	.	T	C	1076	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.69;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1109,120,0
chrXII	999870	.	T	A	1862	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.6757;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=22.99;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1895,195,0
chrXII	999927	.	A	G	2654	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=22.30;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2687,282,0
chrXII	1000003	.	C	T	1721	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=24.24;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1754,180,0
chrXII	1000542	.	C	G	1633	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=18.77;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1666,177,0
chrXII	1000826	.	A	G	1858	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.60;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1891,207,0
chrXII	1001139	.	A	G	3162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=143;Dels=0.00;FS=7.733;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.487;QD=22.11;ReadPosRankSum=2.364;SB=-1.499e+03	GT:AD:DP:GQ:PL	1/1:2,141:143:99:3195,342,0
chrXII	1001409	.	T	C	1955	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.7040;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.58;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1988,219,0
chrXII	1001464	.	T	G	2062	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=121;Dels=0.00;FS=5.387;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.415;QD=17.04;ReadPosRankSum=1.532;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2095,225,0
chrXII	1001509	.	C	T	2126	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=17.57;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,118:121:99:2159,231,0
chrXII	1001833	.	C	T	2555	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.23;SB=-1.467e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2588,264,0
chrXII	1001879	.	G	A	2179	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.36;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2212,243,0
chrXII	1002019	.	C	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.46;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1036,108,0
chrXII	1002243	.	G	C	537	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=10.53;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:1,48:51:63:570,63,0
chrXII	1002952	.	T	C	1343	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1376,150,0
chrXII	1003093	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=9.685;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-2.019;QD=20.97;ReadPosRankSum=2.333;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1354,144,0
chrXII	1003096	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=4.964;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;MQRankSum=-0.025;QD=19.10;ReadPosRankSum=1.682;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1351,141,0
chrXII	1003111	.	C	T	1721	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.56;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1754,195,0
chrXII	1003348	.	A	G	1332	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.49;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1365,147,0
chrXII	1004176	.	G	A	497	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.8898;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=10.35;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:57:530,57,0
chrXII	1004186	.	A	T	547	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=14.78;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:580,60,0
chrXII	1004257	.	T	C	965	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.92;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:998,105,0
chrXII	1004509	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=23.78;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1246,135,0
chrXII	1004687	.	T	C	2308	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=24.04;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2341,249,0
chrXII	1004854	.	A	G	1429	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.41;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1462,156,0
chrXII	1004857	.	A	G	1369	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.921;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-0.562;QD=18.50;ReadPosRankSum=1.639;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1402,153,0
chrXII	1005004	.	G	A	1927	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.5309;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.28;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1960,204,0
chrXII	1006048	.	C	G	122.13	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=52.8296;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=1.51;SB=-1.016e+02	GT:AD:DP:GQ:PL	1/1:0,8:81:18:155,18,0
chrXII	1006086	.	A	G	1515	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.22;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1548,165,0
chrXII	1006150	.	C	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.26;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1585,171,0
chrXII	1006283	.	A	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=18.87;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1863,195,0
chrXII	1006293	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;QD=16.47;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1614,174,0
chrXII	1006308	.	G	A	1488	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=16.72;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1521,162,0
chrXII	1006345	.	A	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=14.28;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1218,126,0
chrXII	1006428	.	T	C	1900	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=23.75;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1933,207,0
chrXII	1006476	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.51;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1679,171,0
chrXII	1006629	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.68;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1191,126,0
chrXII	1006710	.	G	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=20.77;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1965,210,0
chrXII	1006767	.	A	T	2108	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.73;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2141,225,0
chrXII	1006848	.	C	A	2169	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.13;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2202,228,0
chrXII	1006859	.	T	A	2142	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.958;QD=22.79;ReadPosRankSum=1.658;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2175,219,0
chrXII	1006977	.	A	G	845	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=18.37;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:878,93,0
chrXII	1007042	.	G	T	1725	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.31;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1758,180,0
chrXII	1007069	.	A	G	1816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=1.374;QD=20.87;ReadPosRankSum=1.692;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1849,198,0
chrXII	1007084	.	G	A	2212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.5283;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=1.266;QD=21.27;ReadPosRankSum=1.632;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2245,240,0
chrXII	1007205	.	T	A	2128	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=23.13;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2161,234,0
chrXII	1007289	.	A	G	845	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.20;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:878,93,0
chrXII	1007574	.	T	A	1977	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.01;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2010,219,0
chrXII	1007690	.	T	G	2072	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.088;QD=24.09;ReadPosRankSum=1.692;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2105,225,0
chrXII	1007730	.	G	C	1802	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=19.59;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1835,198,0
chrXII	1007751	.	G	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.8629;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.49;SB=-1.397e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2067,228,0
chrXII	1008048	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.838;DP=81;Dels=0.00;FS=5.491;HaplotypeScore=5.6494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.663;QD=20.54;ReadPosRankSum=2.838;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:3,78:81:99:1697,183,0
chrXII	1008693	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.100;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-0.318;QD=21.94;ReadPosRankSum=1.662;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1108,120,0
chrXII	1008704	.	G	A	971	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.11;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1004,102,0
chrXII	1008786	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=24.47;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1085,114,0
chrXII	1008837	.	A	G	1211	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.43;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1244,132,0
chrXII	1008873	.	A	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7097;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.82;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1473,153,0
chrXII	1008909	.	G	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.83;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1749,180,0
chrXII	1009056	.	C	T	1775	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=25.72;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1808,189,0
chrXII	1009176	.	C	T	2219	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.11;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,93:96:99:2252,234,0
chrXII	1009478	.	C	T	3637.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.2556;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=25.08;SB=-1.782e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3637,373,0
chrXII	1009506	.	T	A	2938	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=22.60;SB=-1.503e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2971,324,0
chrXII	1009536	.	G	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.91;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1980,207,0
chrXII	1009581	.	T	G	1588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=-1.732;QD=21.17;ReadPosRankSum=1.685;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1621,171,0
chrXII	1009608	.	T	C	1456	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=22.06;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1489,162,0
chrXII	1009623	.	G	C	1497	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.01;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1530,162,0
chrXII	1009697	.	T	C	1796	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.11;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1829,198,0
chrXII	1009719	.	G	A	2178	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=20.55;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2211,225,0
chrXII	1009980	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.06;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1202,123,0
chrXII	1010019	.	C	T	1061	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.40;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1094,114,0
chrXII	1010685	.	G	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.16;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1041,111,0
chrXII	1011129	.	G	A	1229	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.76;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1262,129,0
chrXII	1011169	.	T	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=17.95;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1110,123,0
chrXII	1011170	.	C	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.9258;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.97;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1171,123,0
chrXII	1011268	.	T	A	1807	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.2975;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.30;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1840,198,0
chrXII	1011337	.	T	C	1928	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.058;HaplotypeScore=5.7855;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.275;QD=21.19;ReadPosRankSum=1.694;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1961,210,0
chrXII	1011446	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=23.42;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1087,114,0
chrXII	1011520	.	T	G	2454	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=95.5514;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=23.60;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2487,261,0
chrXII	1011621	.	G	A	1564	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=18.19;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1597,180,0
chrXII	1012106	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.451;QD=21.60;ReadPosRankSum=1.639;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1653,177,0
chrXII	1012271	.	A	G	537	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=12.79;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:63:570,63,0
chrXII	1012275	.	A	T	526	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.47;MQ0=0;QD=12.23;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:60:559,60,0
chrXII	1013013	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=16.77;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1274,138,0
chrXII	1013133	.	G	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=15.63;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1221,126,0
chrXII	1013388	.	A	G	1561	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.01;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1594,174,0
chrXII	1013592	.	A	C	2208	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=104;Dels=0.00;FS=4.814;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.194;QD=21.23;ReadPosRankSum=1.665;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:1,102:104:99:2241,246,0
chrXII	1014017	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.27;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1440,150,0
chrXII	1014332	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.89;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1485,153,0
chrXII	1014538	.	A	G	963	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.06;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:996,105,0
chrXII	1014541	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.15;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1000,108,0
chrXII	1015234	.	C	G	330	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:39:363,39,0
chrXII	1015543	.	T	A	955	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.70;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:99:988,108,0
chrXII	1015913	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=86;Dels=0.00;FS=3.547;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.927;QD=20.16;ReadPosRankSum=-0.886;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1767,189,0
chrXII	1016758	.	T	A	2119	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.57;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2152,225,0
chrXII	1016879	.	C	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=20.41;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1911,201,0
chrXII	1016904	.	T	C	1730	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=2.743;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=-0.988;QD=17.84;ReadPosRankSum=2.398;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:2,94:97:99:1763,186,0
chrXII	1016924	.	A	G	1511	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.43;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1544,165,0
chrXII	1016971	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.24;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1168,123,0
chrXII	1016982	.	T	C	1208	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=2.612;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;MQRankSum=0.309;QD=20.13;ReadPosRankSum=2.368;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1241,132,0
chrXII	1017008	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.38;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1447,150,0
chrXII	1017052	.	C	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.8069;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.39;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1637,171,0
chrXII	1017081	.	C	T	1776	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.20;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1809,186,0
chrXII	1017596	.	C	A	2072	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.9081;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=25.27;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2105,219,0
chrXII	1017671	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.51;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1775,189,0
chrXII	1017718	.	C	T	1377	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.88;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1410,153,0
chrXII	1019140	.	A	T	71.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=18.1965;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;MQRankSum=0.549;QD=1.88;ReadPosRankSum=3.227;SB=-1.363e+02	GT:AD:DP:GQ:PL	1/1:9,29:38:12:104,12,0
chrXII	1019199	.	A	G	621	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=21.41;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:69:654,69,0
chrXII	1019284	.	C	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=25.40;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1303,138,0
chrXII	1019336	.	G	A	684	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=17.54;SB=-2.260e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:81:717,81,0
chrXII	1019357	.	G	T	734	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.84;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:767,81,0
chrXII	1019765	.	T	C	1793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=-0.265;QD=21.09;ReadPosRankSum=1.569;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1826,192,0
chrXII	1019825	.	G	A	1314	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.19;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1347,138,0
chrXII	1020076	.	C	T	2187	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=22.32;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2220,228,0
chrXII	1020118	.	A	T	1267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=-1.223;QD=18.63;ReadPosRankSum=1.579;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1300,135,0
chrXII	1020119	.	G	T	1207	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.29;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1240,132,0
chrXII	1020142	.	T	C	1018	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=16.42;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1051,111,0
chrXII	1020176	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=79;Dels=0.00;FS=2.762;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.265;QD=16.46;ReadPosRankSum=2.294;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1333,141,0
chrXII	1020245	.	T	G	2573	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.05;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2606,279,0
chrXII	1020317	.	G	C	1802	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.02;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1835,201,0
chrXII	1020320	.	C	T	1884	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.66;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1917,198,0
chrXII	1020437	.	T	C	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=54;Dels=0.00;FS=8.170;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=1.144;QD=19.15;ReadPosRankSum=2.357;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:2,51:54:99:1067,114,0
chrXII	1020605	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=5.191;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.410;QD=19.92;ReadPosRankSum=1.687;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1547,165,0
chrXII	1020991	.	T	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.31;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1394,147,0
chrXII	1021226	.	A	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.27;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1391,147,0
chrXII	1021339	.	T	C	2168	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.4242;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.57;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2201,234,0
chrXII	1021405	.	G	A	1293	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=21.55;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1326,135,0
chrXII	1021444	.	T	A	693	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3724;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=12.60;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:78:726,78,0
chrXII	1021463	.	A	G	397	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=7.63;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:48:430,48,0
chrXII	1021464	.	G	A	395	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.03;MQ0=0;QD=7.60;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:48:428,48,0
chrXII	1021471	.	T	C	503	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.579;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;MQRankSum=-1.489;QD=8.82;ReadPosRankSum=1.611;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:60:536,60,0
chrXII	1021493	.	A	G	770	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=11.85;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:87:803,87,0
chrXII	1021577	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=19.56;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1617,168,0
chrXII	1021580	.	C	T	1481	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.75;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1514,162,0
chrXII	1021739	.	A	G	1823	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.99;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1856,192,0
chrXII	1021808	.	T	G	1615	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=22.75;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1648,177,0
chrXII	1022290	.	A	G	1596	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.82;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1629,174,0
chrXII	1022329	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.8821;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.93;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1718,192,0
chrXII	1022511	.	C	T	2762	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=25.57;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2795,288,0
chrXII	1022570	.	T	G	2147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.157;QD=21.47;ReadPosRankSum=1.697;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2180,234,0
chrXII	1022895	.	T	C	2208	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=110;Dels=0.00;FS=3.602;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.913;QD=20.07;ReadPosRankSum=1.701;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2241,240,0
chrXII	1022933	.	C	T	2674	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.05;SB=-1.618e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2707,276,0
chrXII	1023101	.	T	C	2037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.501;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.488;QD=19.78;ReadPosRankSum=1.698;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2070,228,0
chrXII	1023248	.	A	T	1808	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.78;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1841,186,0
chrXII	1023320	.	G	A	2813	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.0482;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.25;SB=-1.487e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2846,294,0
chrXII	1023413	.	C	T	2281	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.81;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2314,234,0
chrXII	1023800	.	C	G	1671	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=21.99;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1704,186,0
chrXII	1023823	.	C	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=22.66;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1619,168,0
chrXII	1024016	.	T	C	1015	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.81;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1048,114,0
chrXII	1024017	.	C	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.37;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1080,114,0
chrXII	1024168	.	G	C	817	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.69;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:90:850,90,0
chrXII	1024253	.	G	A	592	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=17.41;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:66:625,66,0
chrXII	1024265	.	T	C	534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.251;QD=14.83;ReadPosRankSum=1.636;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:1,35:36:60:567,60,0
chrXII	1024509	.	C	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.48;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1449,150,0
chrXII	1024747	.	A	G	903	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.02;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:99:936,99,0
chrXII	1024893	.	T	C	694	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.7102;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=15.09;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:78:727,78,0
chrXII	1025001	.	G	T	36.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=20.2749;MLEAC=1;MLEAF=0.500;MQ=43.62;MQ0=0;MQRankSum=-1.102;QD=1.50;ReadPosRankSum=0.157;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:9,14:23:59:66,0,59
chrXII	1025145	.	A	G	635	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.84;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:72:668,72,0
chrXII	1025149	.	G	T	664	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.53;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:72:697,72,0
chrXII	1025152	.	C	T	594	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;QD=16.97;SB=-1.270e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:66:627,66,0
chrXII	1025223	.	G	A	647	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=16.59;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,38:39:75:680,75,0
chrXII	1025420	.	G	A	942	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.93;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:975,99,0
chrXII	1025702	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.58;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1263,135,0
chrXII	1025733	.	C	G	1047	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.04;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1080,114,0
chrXII	1025753	.	T	C	1096	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3362;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=-1.654;QD=18.58;ReadPosRankSum=2.367;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1129,120,0
chrXII	1025801	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=18.78;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1254,138,0
chrXII	1026008	.	C	A	2342	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.0535;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.91;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2375,243,0
chrXII	1026103	.	G	T	1659	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.40;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1692,174,0
chrXII	1026205	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.82;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1676,174,0
chrXII	1026208	.	G	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.26;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1585,174,0
chrXII	1026243	.	C	T	1053	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.80;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1086,114,0
chrXII	1026338	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4539;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.65;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1505,153,0
chrXII	1026523	.	C	T	687	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=17.62;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:78:720,78,0
chrXII	1026527	.	A	T	714	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=19.30;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:75:747,75,0
chrXII	1026581	.	T	C	615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;MQRankSum=1.408;QD=18.64;ReadPosRankSum=1.625;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:1,31:33:69:648,69,0
chrXII	1026781	.	G	C	1389	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.2423;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.28;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1422,153,0
chrXII	1026865	.	G	A	2105	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=25.06;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2138,216,0
chrXII	1026880	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=18.23;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1564,177,0
chrXII	1026889	.	T	C	1524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.343;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7153;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;MQRankSum=-0.525;QD=19.29;ReadPosRankSum=3.119;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:4,75:79:99:1557,165,0
chrXII	1027477	.	C	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.06;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1676,183,0
chrXII	1027483	.	A	G	1444	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.25;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1477,159,0
chrXII	1027555	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=3.040;HaplotypeScore=5.7786;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.191;QD=15.23;ReadPosRankSum=2.391;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1312,144,0
chrXII	1027573	.	T	C	1592	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=-1.583;QD=17.12;ReadPosRankSum=1.695;SB=-1.186e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1625,174,0
chrXII	1027615	.	C	T	2038	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.6726;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.23;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2071,216,0
chrXII	1027717	.	G	A	2476	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=9.6688;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.72;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2509,258,0
chrXII	1028133	.	G	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.44;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1877,192,0
chrXII	1028155	.	G	T	2390	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=21.53;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2423,249,0
chrXII	1028305	.	T	C	2900	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.7898;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.80;SB=-1.600e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2933,315,0
chrXII	1028480	.	C	T	1999	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0934;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.21;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2032,219,0
chrXII	1028522	.	G	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.20;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1835,192,0
chrXII	1028683	.	G	C	1751	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=17.00;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1784,186,0
chrXII	1028684	.	T	C	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=5.177;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=-1.206;QD=16.36;ReadPosRankSum=1.361;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,111:112:99:1865,204,0
chrXII	1028958	.	C	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=22.07;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1291,141,0
chrXII	1029028	.	A	G	2460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.217;DP=127;Dels=0.00;FS=3.042;HaplotypeScore=7.8964;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-0.416;QD=19.37;ReadPosRankSum=2.411;SB=-1.634e+03	GT:AD:DP:GQ:PL	1/1:2,125:127:99:2493,267,0
chrXII	1029053	.	C	T	3045	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=22.39;SB=-1.688e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:99:3078,324,0
chrXII	1030090	.	C	T	2636	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.41;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2669,273,0
chrXII	1030200	.	T	G	2792	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.7565;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=21.31;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2825,303,0
chrXII	1030239	.	G	A	3446.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=23.28;SB=-1.574e+03	GT:AD:DP:GQ:PL	1/1:0,145:148:99:3446,360,0
chrXII	1030577	.	T	C	2393	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=18.41;SB=-1.555e+03	GT:AD:DP:GQ:PL	1/1:0,128:130:99:2426,258,0
chrXII	1030580	.	G	A	2332	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=39.21;MQ0=0;QD=17.94;SB=-1.475e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2365,249,0
chrXII	1030604	.	T	G	1748	SnpCluster	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=14.94;SB=-1.315e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1781,195,0
chrXII	1030608	.	C	T	1682	SnpCluster	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=15.43;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1715,174,0
chrXII	1030614	.	A	G	1410	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=40.58;MQ0=0;MQRankSum=-1.170;QD=13.82;ReadPosRankSum=2.270;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:3,98:102:99:1443,153,0
chrXII	1031518	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.0653;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.773;QD=20.89;ReadPosRankSum=1.679;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1412,150,0
chrXII	1031571	.	G	A	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=76;Dels=0.00;FS=3.126;HaplotypeScore=10.8170;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.413;QD=17.29;ReadPosRankSum=-1.687;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1347,141,0
chrXII	1031689	.	C	T	1842	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4618;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.89;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1875,195,0
chrXII	1031844	.	C	T	2754	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.98;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2787,285,0
chrXII	1032016	.	C	T	2792	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5653;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=19.80;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:2825,294,0
chrXII	1032050	.	A	C	3699.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=8.3130;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=0.465;QD=21.02;ReadPosRankSum=1.712;SB=-1.666e+03	GT:AD:DP:GQ:PL	1/1:1,174:176:99:3699,402,0
chrXII	1032238	.	G	A	1730	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.84;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1763,183,0
chrXII	1032807	.	A	G	613	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;MQRankSum=-0.226;QD=13.33;ReadPosRankSum=1.657;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:69:646,69,0
chrXII	1032821	.	A	C	720	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=15.32;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:81:753,81,0
chrXII	1032857	.	C	T	694	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.0520;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=11.97;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:75:727,75,0
chrXII	1032869	.	T	C	691	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=13.82;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:78:724,78,0
chrXII	1033418	.	T	C	1028	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.40;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1061,114,0
chrXII	1033763	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.06;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1621,168,0
chrXII	1033895	.	C	T	2507	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.61;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2540,276,0
chrXII	1034027	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6997;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.29;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2013,207,0
chrXII	1034073	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.86;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1541,168,0
chrXII	1034198	.	C	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.39;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1616,177,0
chrXII	1034264	.	G	A	1583	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3627;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1616,168,0
chrXII	1034324	.	A	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9276;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.91;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1260,129,0
chrXII	1034684	.	A	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.02;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1200,126,0
chrXII	1034753	.	G	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1395,144,0
chrXII	1034912	.	G	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.99;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1572,162,0
chrXII	1035228	.	G	A	1252	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.89;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1285,141,0
chrXII	1035755	.	A	G	1875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5921;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.657;QD=21.31;ReadPosRankSum=1.692;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1908,207,0
chrXII	1036112	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.59;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1920,204,0
chrXII	1036323	.	T	C	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.300;QD=21.97;ReadPosRankSum=1.686;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1681,183,0
chrXII	1036568	.	G	A	1409	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.48;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1442,150,0
chrXII	1036852	.	G	T	1637	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.74;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1670,171,0
chrXII	1037313	.	A	G	2078	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.84;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2111,225,0
chrXII	1037709	.	C	T	2440	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.150;DP=123;Dels=0.00;FS=2.739;HaplotypeScore=12.4282;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=2.370;QD=19.84;ReadPosRankSum=2.250;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:2,121:123:99:2473,264,0
chrXII	1038200	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.46;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1784,192,0
chrXII	1038361	.	C	A	2171	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3920;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2204,246,0
chrXII	1038948	.	A	G	2754	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=4.559;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-0.462;QD=22.76;ReadPosRankSum=1.703;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:1,119:121:99:2787,303,0
chrXII	1039156	.	A	G	3170	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=22.01;SB=-1.621e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3203,345,0
chrXII	1039289	.	T	C	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=82;Dels=0.00;FS=10.935;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=-0.519;QD=20.00;ReadPosRankSum=2.865;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:3,79:82:99:1673,177,0
chrXII	1039435	.	T	A	2271	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1358;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.26;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2304,237,0
chrXII	1039504	.	T	C	1660	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.75;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1693,183,0
chrXII	1039762	.	C	T	2000	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.05;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2033,219,0
chrXII	1040062	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.73;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1194,120,0
chrXII	1040071	.	A	G	1139	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.52;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1172,126,0
chrXII	1040317	.	C	T	1412	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.06;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1445,150,0
chrXII	1040530	.	C	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.61;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1481,162,0
chrXII	1040785	.	G	A	2159	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=25.40;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:2192,225,0
chrXII	1041070	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.81;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1887,204,0
chrXII	1041901	.	G	A	1881	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1914,207,0
chrXII	1042079	.	C	T	2716	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=24.25;SB=-1.521e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2749,282,0
chrXII	1042085	.	G	A	2547	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=22.74;SB=-1.535e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2580,264,0
chrXII	1042132	.	A	G	1935	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.50;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1968,207,0
chrXII	1042302	.	G	A	3411.01	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=24.90;SB=-1.571e+03	GT:AD:DP:GQ:PL	1/1:0,136:137:99:3411,352,0
chrXII	1042381	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.91;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1742,186,0
chrXII	1042439	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.48;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1767,186,0
chrXII	1042447	.	A	T	1799	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.92;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1832,186,0
chrXII	1042661	.	C	A	1615	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=17.18;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1648,171,0
chrXII	1042673	.	C	T	1631	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5160;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.92;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1664,171,0
chrXII	1043089	.	C	A	2832	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.98;SB=-1.391e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2865,312,0
chrXII	1043157	.	G	C	1253	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.54;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1286,138,0
chrXII	1043176	.	C	T	1002	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.32;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1035,105,0
chrXII	1043284	.	A	C	1672	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1705,180,0
chrXII	1043576	.	T	G	1688	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.724;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=0.525;QD=25.58;ReadPosRankSum=1.575;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1721,183,0
chrXII	1043666	.	C	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.15;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1606,174,0
chrXII	1043700	.	G	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.77;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1496,153,0
chrXII	1043701	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.01;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1440,150,0
chrXII	1044159	.	C	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.16;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1845,189,0
chrXII	1044366	.	G	T	2300	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.00;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2333,243,0
chrXII	1044654	.	A	G	2494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=3.259;HaplotypeScore=21.0486;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.898;QD=22.88;ReadPosRankSum=1.700;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2527,276,0
chrXII	1044768	.	G	A	2116	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.51;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2149,219,0
chrXII	1044838	.	G	A	1846	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.0546;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.74;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1879,195,0
chrXII	1045329	.	G	A	2546	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.7086;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.96;SB=-1.431e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2579,264,0
chrXII	1045359	.	G	T	2094	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.4656;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.81;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2127,225,0
chrXII	1045642	.	T	C	2149	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.15;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2182,237,0
chrXII	1045751	.	C	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.10;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1721,186,0
chrXII	1045779	.	A	G	1585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.048;QD=20.86;ReadPosRankSum=1.687;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1618,174,0
chrXII	1050100	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.02;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1334,144,0
chrXII	1050450	.	C	T	2257	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.65;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2290,240,0
chrXII	1051116	.	A	T	3180	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.73;SB=-1.500e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:3213,345,0
chrXII	1051443	.	C	G	1916	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.29;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1949,207,0
chrXII	1051794	.	T	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.47;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1536,165,0
chrXII	1051806	.	T	C	1361	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=67;Dels=0.00;FS=3.041;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;MQRankSum=-1.552;QD=20.31;ReadPosRankSum=2.375;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:2,64:67:99:1394,150,0
chrXII	1052021	.	T	C	1837	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;QD=22.40;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1870,201,0
chrXII	1052040	.	G	A	1141	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.50;MQ0=0;QD=21.53;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1174,129,0
chrXII	1052166	.	G	A	1384	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=22.32;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1417,144,0
chrXII	1052191	.	G	A	1893	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;QD=21.03;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1926,201,0
chrXII	1052276	.	T	A	777	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=41.75;MQ0=0;MQRankSum=-1.405;QD=14.66;ReadPosRankSum=1.667;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:84:810,84,0
chrXII	1052344	.	A	T	2000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=7.082;HaplotypeScore=5.8776;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=1.944;QD=25.64;ReadPosRankSum=1.091;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:2033,216,0
chrXII	1052381	.	G	A	2428	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=24.78;SB=-1.220e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2461,273,0
chrXII	1052500	.	T	C	3140	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2068;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-0.823;QD=24.15;ReadPosRankSum=2.336;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:2,128:130:99:3173,339,0
chrXII	1052563	.	T	C	2204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-0.017;QD=22.26;ReadPosRankSum=1.627;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2237,246,0
chrXII	1052595	.	C	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;QD=20.51;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1940,204,0
chrXII	1052608	.	A	T	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;DP=100;Dels=0.00;FS=12.826;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;MQRankSum=1.677;QD=18.38;ReadPosRankSum=2.869;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:3,97:100:99:1871,195,0
chrXII	1052618	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=19.30;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1828,192,0
chrXII	1052624	.	G	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.62;MQ0=0;QD=17.63;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1673,174,0
chrXII	1052679	.	A	G	2752	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.950;DP=144;Dels=0.00;FS=5.878;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.236;QD=19.11;ReadPosRankSum=2.950;SB=-1.664e+03	GT:AD:DP:GQ:PL	1/1:3,138:144:99:2785,300,0
chrXII	1052745	.	T	C	4268.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.4718;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.625;QD=21.67;ReadPosRankSum=1.590;SB=-2.135e+03	GT:AD:DP:GQ:PL	1/1:1,194:197:99:4268,459,0
chrXII	1052775	.	G	A	3491.01	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=20.90;SB=-1.567e+03	GT:AD:DP:GQ:PL	1/1:0,167:167:99:3491,363,0
chrXII	1052828	.	A	G	2391	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.44;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2424,258,0
chrXII	1052841	.	T	C	2317	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.50;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2350,252,0
chrXII	1052955	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=20.40;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1747,180,0
chrXII	1052996	.	T	G	2074	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=21.83;SB=-9.101e+01	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2107,228,0
chrXII	1053092	.	C	G	708	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=17.27;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:78:741,78,0
chrXII	1053367	.	A	G	839	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.866;QD=22.68;ReadPosRankSum=0.963;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,35:37:93:872,93,0
chrXII	1053416	.	C	T	953	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=25.76;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:99:986,102,0
chrXII	1053478	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.34;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1192,126,0
chrXII	1053517	.	T	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.02;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1115,123,0
chrXII	1053841	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.03;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1358,147,0
chrXII	1054279	.	C	T	2197	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=26.15;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2230,228,0
chrXII	1054311	.	T	A	1328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-0.268;QD=18.70;ReadPosRankSum=1.683;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1361,138,0
chrXII	1054312	.	C	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;QD=18.15;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1322,138,0
chrXII	1054390	.	A	G	2214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=7.315;HaplotypeScore=5.7995;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.196;QD=22.59;ReadPosRankSum=1.696;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,96:98:99:2247,240,0
chrXII	1054922	.	T	C	3282.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.029;QD=25.44;ReadPosRankSum=2.411;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:2,126:129:99:3282,351,0
chrXII	1054968	.	C	G	2470	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.75;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2503,258,0
chrXII	1055114	.	T	A	788	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=16.77;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:821,90,0
chrXII	1055151	.	T	A	1169	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.25;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1202,123,0
chrXII	1055158	.	G	C	1171	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=18.89;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1204,129,0
chrXII	1055417	.	T	C	1397	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=25.40;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1430,150,0
chrXII	1055554	.	T	C	2082	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.69;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2115,222,0
chrXII	1055655	.	A	T	2423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=6.620;HaplotypeScore=7.3720;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.163;QD=24.72;ReadPosRankSum=2.374;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:2,96:98:99:2456,255,0
chrXII	1055717	.	T	C	1919	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.81;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1952,207,0
chrXII	1055730	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4293;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.12;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1864,198,0
chrXII	1055950	.	T	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0525;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.03;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1422,153,0
chrXII	1056105	.	G	C	1775	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.88;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1808,195,0
chrXII	1056262	.	T	C	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.563;QD=22.39;ReadPosRankSum=1.689;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1824,198,0
chrXII	1056565	.	G	A	1924	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.47;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1957,213,0
chrXII	1056569	.	G	C	1978	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.78;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2011,210,0
chrXII	1056760	.	G	C	2810	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=9.4529;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.29;SB=-1.688e+03	GT:AD:DP:GQ:PL	1/1:0,130:132:99:2843,306,0
chrXII	1056900	.	G	A	2826	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=23.75;SB=-1.661e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2859,291,0
chrXII	1057013	.	C	T	2062	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=17.5383;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.18;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2095,231,0
chrXII	1057047	.	G	T	3218.91	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.01;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.67;SB=-1.476e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3252,339,0
chrXII	1057084	.	T	G	3566.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=7.5514;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=22.15;SB=-1.935e+03	GT:AD:DP:GQ:PL	1/1:0,160:161:99:3566,372,0
chrXII	1057101	.	T	C	3491.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=171;Dels=0.01;FS=3.336;HaplotypeScore=158.5294;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.501;QD=20.42;ReadPosRankSum=1.711;SB=-2.086e+03	GT:AD:DP:GQ:PL	1/1:2,165:170:99:3491,367,0
chrXII	1057223	.	C	T	3352.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.50;SB=-1.820e+03	GT:AD:DP:GQ:PL	1/1:0,146:149:99:3352,357,0
chrXII	1057759	.	T	C	2138	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.302;DP=100;Dels=0.00;FS=6.423;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.062;QD=21.38;ReadPosRankSum=2.401;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:2,98:100:99:2171,231,0
chrXII	1057870	.	G	A	2707	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.39;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,108:111:99:2740,282,0
chrXII	1058109	.	T	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.59;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1845,195,0
chrXII	1058607	.	C	T	1825	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.169;QD=21.73;ReadPosRankSum=-1.648;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1858,195,0
chrXII	1058899	.	A	G	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.638;QD=22.38;ReadPosRankSum=1.687;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1734,186,0
chrXII	1059052	.	T	C	1194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=7.191;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;MQRankSum=0.454;QD=17.56;ReadPosRankSum=2.377;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1227,132,0
chrXII	1059054	.	G	A	1314	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=18.77;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1347,144,0
chrXII	1059176	.	C	A	774	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=11.38;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:84:807,84,0
chrXII	1059203	.	G	T	1247	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.58;MQ0=0;QD=14.50;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1280,132,0
chrXII	1059360	.	A	G	363	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=1;QD=12.10;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:42:396,42,0
chrXII	1059428	.	A	T	241.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=2;MQRankSum=1.883;QD=6.34;ReadPosRankSum=1.670;SB=-3.002e+01	GT:AD:DP:GQ:PL	1/1:2,36:38:27:274,27,0
chrXII	1059564	.	T	A	384	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=3;QD=4.86;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,79:79:45:417,45,0
chrXII	1059571	.	T	C	404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=84;Dels=0.00;FS=6.407;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.50;MQ0=3;MQRankSum=-0.015;QD=4.81;ReadPosRankSum=2.389;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:48:437,48,0
chrXII	1059588	.	T	G	562	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=28.99;MQ0=2;QD=7.02;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:66:595,66,0
chrXII	1059611	.	A	G	517	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=2;QD=6.38;SB=-2.120e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:60:550,60,0
chrXII	1059640	.	G	T	346	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.13;MQ0=0;QD=7.36;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:39:379,39,0
chrXII	1059652	.	G	C	235	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=6.35;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:30:268,30,0
chrXII	1059857	.	A	G	82.51	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=3;QD=4.13;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:12:115,12,0
chrXII	1060156	.	C	A	50.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;DP=68;Dels=0.00;FS=7.543;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.05;MQ0=13;MQRankSum=-3.398;QD=0.74;ReadPosRankSum=-2.308;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:47,21:68:80:80,0,861
chrXII	1060196	.	T	C	114.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;DP=39;Dels=0.00;FS=24.120;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=21.03;MQ0=11;MQRankSum=-1.127;QD=2.92;ReadPosRankSum=-3.716;SB=-8.501e+01	GT:AD:DP:GQ:PL	0/1:16,23:39:35:144,0,35
chrXII	1060207	.	A	G	106.26	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.15;MQ0=9;QD=3.04;SB=-5.614e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:15:139,15,0
chrXII	1060218	.	A	G	51.97	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=15.19;MQ0=10;QD=1.48;SB=-5.547e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:9:84,9,0
chrXII	1060363	.	T	G	1505	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6606;MLEAC=2;MLEAF=1.00;MQ=39.61;MQ0=3;QD=21.20;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1538,168,0
chrXII	1060386	.	C	T	179.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;DP=74;Dels=0.00;FS=15.532;HaplotypeScore=3.0311;MLEAC=1;MLEAF=0.500;MQ=45.26;MQ0=3;MQRankSum=-1.260;QD=2.42;ReadPosRankSum=-0.627;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:54,20:74:99:209,0,1116
chrXII	1060417	.	C	T	368.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;DP=94;Dels=0.00;FS=18.439;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=49.60;MQ0=6;MQRankSum=-0.555;QD=3.91;ReadPosRankSum=0.527;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,31:94:99:398,0,1154
chrXII	1060460	.	A	G	1894	filter	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=7;QD=19.73;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1927,207,0
chrXII	1060513	.	T	C	786.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.851;DP=118;Dels=0.00;FS=29.076;HaplotypeScore=5.3104;MLEAC=1;MLEAF=0.500;MQ=41.49;MQ0=5;MQRankSum=-0.585;QD=6.66;ReadPosRankSum=-1.455;SB=-1.830e+02	GT:AD:DP:GQ:PL	0/1:62,56:118:99:816,0,1090
chrXII	1060633	.	G	A	419.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;DP=70;Dels=0.00;FS=4.843;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=21;MQRankSum=1.503;QD=5.99;ReadPosRankSum=1.695;SB=-1.730e+02	GT:AD:DP:GQ:PL	0/1:35,34:70:99:449,0,229
chrXII	1060636	.	A	T	155.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=70;Dels=0.00;FS=6.559;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=27.74;MQ0=21;MQRankSum=-1.403;QD=2.21;ReadPosRankSum=-2.126;SB=-4.801e+01	GT:AD:DP:GQ:PL	0/1:37,33:70:99:185,0,451
chrXII	1060653	.	T	C	864	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=16;MQRankSum=-0.704;QD=14.40;ReadPosRankSum=2.338;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:2,57:60:96:897,96,0
chrXII	1060750	.	G	C	59.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;DP=76;Dels=0.00;FS=2.534;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=44.27;MQ0=6;MQRankSum=-3.278;QD=0.78;ReadPosRankSum=-2.562;SB=-2.007e+00	GT:AD:DP:GQ:PL	0/1:56,20:76:89:89,0,928
chrXII	1060825	.	A	G	366.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;DP=80;Dels=0.00;FS=5.277;HaplotypeScore=3.1435;MLEAC=1;MLEAF=0.500;MQ=44.44;MQ0=6;MQRankSum=-4.451;QD=4.58;ReadPosRankSum=0.720;SB=-1.060e+02	GT:AD:DP:GQ:PL	0/1:45,35:80:99:396,0,816
chrXII	1060878	.	C	A	291.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;DP=71;Dels=0.00;FS=1.220;HaplotypeScore=4.8766;MLEAC=1;MLEAF=0.500;MQ=39.07;MQ0=6;MQRankSum=-3.424;QD=4.10;ReadPosRankSum=-0.581;SB=-1.060e+02	GT:AD:DP:GQ:PL	0/1:40,30:71:99:321,0,633
chrXII	1060901	.	C	A	1215	filter	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=33.61;MQ0=10;QD=15.19;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1248,135,0
chrXII	1060918	.	A	G	1381	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=10;MQRankSum=-1.649;QD=15.18;ReadPosRankSum=2.388;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:2,88:91:99:1414,156,0
chrXII	1060944	.	A	G	1747	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=31.41;MQ0=11;MQRankSum=1.112;QD=16.48;ReadPosRankSum=1.696;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1780,192,0
chrXII	1061000	.	A	G	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=33.64;MQ0=6;MQRankSum=-2.185;QD=0.43;ReadPosRankSum=-1.376;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:44,16:60:56:56,0,695
chrXII	1061018	.	G	A	19.06	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DP=56;Dels=0.00;FS=1.768;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=32.95;MQ0=8;MQRankSum=-0.597;QD=0.34;ReadPosRankSum=-0.901;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:42,14:56:49:49,0,610
chrXII	1061031	.	T	C	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=1;MLEAF=0.500;MQ=34.03;MQ0=7;MQRankSum=-0.776;QD=0.30;ReadPosRankSum=0.966;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:37,10:47:44:44,0,406
chrXII	1061054	.	A	G	372.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;DP=54;Dels=0.00;FS=14.509;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=35.89;MQ0=9;MQRankSum=1.707;QD=6.89;ReadPosRankSum=1.578;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:17,37:54:59:402,0,59
chrXII	1061083	.	A	G	699	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=13;QD=13.98;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:75:732,75,0
chrXII	1061101	.	G	A	422.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DP=50;Dels=0.00;FS=8.870;HaplotypeScore=4.0789;MLEAC=1;MLEAF=0.500;MQ=36.70;MQ0=13;MQRankSum=1.937;QD=8.44;ReadPosRankSum=-1.013;SB=-1.200e+02	GT:AD:DP:GQ:PL	0/1:19,29:50:99:452,0,148
chrXII	1061138	.	G	A	292.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;DP=58;Dels=0.00;FS=10.318;HaplotypeScore=6.2233;MLEAC=1;MLEAF=0.500;MQ=39.88;MQ0=7;MQRankSum=0.725;QD=5.03;ReadPosRankSum=0.725;SB=-1.770e+02	GT:AD:DP:GQ:PL	0/1:31,27:58:99:322,0,422
chrXII	1061140	.	G	A	416.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;DP=57;Dels=0.00;FS=5.948;HaplotypeScore=5.4346;MLEAC=1;MLEAF=0.500;MQ=40.18;MQ0=7;MQRankSum=-0.456;QD=7.30;ReadPosRankSum=-1.000;SB=-9.701e+01	GT:AD:DP:GQ:PL	0/1:25,32:57:99:446,0,310
chrXII	1061159	.	A	G	579	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=39;Dels=0.00;FS=6.320;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.07;MQ0=9;MQRankSum=-0.809;QD=14.85;ReadPosRankSum=1.617;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:69:612,69,0
chrXII	1061166	.	G	A	110.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.05;MQ0=11;MQRankSum=-1.461;QD=2.62;ReadPosRankSum=-1.334;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:24,18:42:99:140,0,328
chrXII	1061174	.	T	C,G	444.01	filter	AC=1,1;AF=0.500,0.500;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.56;MQ0=9;QD=11.10;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/2:0,21,19:40:99:504,178,139,325,0,302
chrXII	1061267	.	T	C	214.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.98;MQ0=20;MQRankSum=-0.170;QD=4.12;ReadPosRankSum=0.546;SB=-1.020e+02	GT:AD:DP:GQ:PL	0/1:24,28:52:99:244,0,141
chrXII	1061320	.	C	T	189.06	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.14;MQ0=15;QD=7.27;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,24:26:21:222,21,0
chrXII	1061444	.	T	C	97.26	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=9;QD=5.12;SB=-2.620e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:15:130,15,0
chrXII	1061460	.	C	T	215.01	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=14;QD=6.52;SB=-8.402e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:27:248,27,0
chrXII	1061504	.	A	C	179.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.108;DP=44;Dels=0.00;FS=4.172;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=33.96;MQ0=12;MQRankSum=2.002;QD=4.07;ReadPosRankSum=-1.012;SB=-1.010e+02	GT:AD:DP:GQ:PL	0/1:11,32:44:99:209,0,117
chrXII	1061521	.	A	T	47.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.560;DP=58;Dels=0.00;FS=18.070;HaplotypeScore=2.5640;MLEAC=1;MLEAF=0.500;MQ=38.49;MQ0=8;MQRankSum=-2.321;QD=0.81;ReadPosRankSum=-0.274;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,12:58:77:77,0,521
chrXII	1061597	.	C	A	567.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=54;Dels=0.00;FS=12.887;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=33.43;MQ0=10;MQRankSum=2.058;QD=10.50;ReadPosRankSum=0.518;SB=-1.300e+02	GT:AD:DP:GQ:PL	0/1:14,40:54:66:597,0,66
chrXII	1061598	.	T	A	19.06	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=53;Dels=0.00;FS=18.618;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=32.73;MQ0=10;MQRankSum=-2.284;QD=0.36;ReadPosRankSum=-0.284;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:43,10:53:49:49,0,646
chrXII	1061635	.	C	T	88.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;DP=56;Dels=0.00;FS=1.323;HaplotypeScore=25.4665;MLEAC=1;MLEAF=0.500;MQ=26.47;MQ0=9;MQRankSum=-3.510;QD=1.57;ReadPosRankSum=-1.079;SB=-7.007e+00	GT:AD:DP:GQ:PL	0/1:26,20:56:99:118,0,307
chrXII	1061676	.	G	A	605	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.74;MQ0=13;QD=14.07;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:638,72,0
chrXII	1061688	.	G	A	71.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;DP=44;Dels=0.00;FS=2.071;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=13;MQRankSum=-4.143;QD=1.61;ReadPosRankSum=1.061;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:27,17:44:99:101,0,371
chrXII	1061693	.	T	A	320.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=12;MQRankSum=4.154;QD=7.27;ReadPosRankSum=1.322;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:19,25:44:99:350,0,104
chrXII	1061695	.	T	C	112.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;DP=49;Dels=0.00;FS=2.156;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=12;MQRankSum=-4.038;QD=2.29;ReadPosRankSum=-1.021;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:28,21:49:99:142,0,349
chrXII	1061714	.	G	C	274.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;DP=48;Dels=0.00;FS=4.688;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.14;MQ0=11;MQRankSum=2.446;QD=5.71;ReadPosRankSum=2.477;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,26:48:99:304,0,260
chrXII	1061733	.	G	C	107.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.859;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.73;MQ0=10;MQRankSum=-1.444;QD=3.06;ReadPosRankSum=2.236;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:23,12:35:99:137,0,268
chrXII	1061735	.	A	G	107.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.18;MQ0=10;MQRankSum=-1.312;QD=3.15;ReadPosRankSum=2.266;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:22,12:34:99:137,0,266
chrXII	1061752	.	T	C	125.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649;DP=18;Dels=0.00;FS=5.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.94;MQ0=0;MQRankSum=1.060;QD=6.94;ReadPosRankSum=0.088;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:9,9:18:72:155,0,72
chrXII	1061753	.	T	G	10.42	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;DP=18;Dels=0.00;FS=9.294;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.22;MQ0=0;MQRankSum=-1.910;QD=0.58;ReadPosRankSum=0.400;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:10,8:18:40:40,0,162
chrXII	1061759	.	A	G	265	SnpCluster	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=21.05;MQ0=0;QD=14.72;SB=-2.200e+01	GT:AD:DP:GQ:PL	1/1:0,17:18:36:298,36,0
chrXII	1061760	.	G	T	44.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=19;Dels=0.00;FS=5.315;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=20.49;MQ0=1;MQRankSum=-1.589;QD=2.32;ReadPosRankSum=-0.265;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:9,10:19:74:74,0,163
chrXII	1061791	.	A	C	105.26	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.56;MQ0=6;QD=6.58;SB=-5.376e+01	GT:AD:DP:GQ:PL	1/1:0,16:16:15:138,15,0
chrXII	1061805	.	A	T	226.01	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.68;MQ0=8;QD=11.90;SB=-8.596e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:27:259,27,0
chrXII	1061902	.	T	G	387	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=28;Dels=0.00;FS=5.166;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.54;MQ0=4;MQRankSum=0.678;QD=13.82;ReadPosRankSum=1.583;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:1,26:28:45:420,45,0
chrXII	1061917	.	C	T	701	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=4;QD=17.10;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:78:734,78,0
chrXII	1062010	.	C	T	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=21.44;MQ0=15;MQRankSum=-4.274;QD=0.57;ReadPosRankSum=-1.235;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,14:47:57:57,0,290
chrXII	1062016	.	G	A	391	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=15;QD=8.50;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:48:424,48,0
chrXII	1062022	.	C	T	57.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=15;MQRankSum=-3.098;QD=1.36;ReadPosRankSum=-2.611;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,12:42:87:87,0,229
chrXII	1062024	.	C	T	62.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.367;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.09;MQ0=15;MQRankSum=-3.391;QD=1.48;ReadPosRankSum=-2.513;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,12:42:92:92,0,223
chrXII	1062072	.	A	G	131.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.583;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=22.58;MQ0=4;MQRankSum=-0.441;QD=6.24;ReadPosRankSum=2.583;SB=-7.388e-02	GT:AD:DP:GQ:PL	1/1:3,17:21:21:164,21,0
chrXII	1062074	.	T	C	133.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.60;MQ0=4;QD=7.39;SB=-7.388e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:21:166,21,0
chrXII	1062078	.	T	C	64.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;DP=19;Dels=0.00;FS=3.310;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=22.28;MQ0=3;MQRankSum=-0.683;QD=3.37;ReadPosRankSum=0.368;SB=-8.690e-03	GT:AD:DP:GQ:PL	0/1:11,8:19:30:94,0,30
chrXII	1062086	.	C	T	167.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DP=25;Dels=0.00;FS=5.647;HaplotypeScore=4.8961;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=2;MQRankSum=-0.175;QD=6.68;ReadPosRankSum=0.525;SB=-7.805e+01	GT:AD:DP:GQ:PL	0/1:8,17:25:17:197,0,17
chrXII	1062152	.	C	T	292.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=70;Dels=0.00;FS=24.893;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=31.08;MQ0=2;MQRankSum=-0.687;QD=4.17;ReadPosRankSum=-0.394;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,25:70:99:322,0,784
chrXII	1062188	.	G	A	1064.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.993;DP=86;Dels=0.00;FS=15.059;HaplotypeScore=5.6480;MLEAC=1;MLEAF=0.500;MQ=35.22;MQ0=1;MQRankSum=-2.674;QD=12.37;ReadPosRankSum=1.172;SB=-3.730e+02	GT:AD:DP:GQ:PL	0/1:33,52:86:99:1094,0,541
chrXII	1062213	.	A	G	2049	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;DP=91;Dels=0.00;FS=20.276;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=38.45;MQ0=0;MQRankSum=0.678;QD=22.52;ReadPosRankSum=2.923;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:3,88:91:99:2082,225,0
chrXII	1062349	.	A	G	66.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=23;Dels=0.00;FS=5.315;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.51;MQ0=6;MQRankSum=0.722;QD=2.87;ReadPosRankSum=0.144;SB=-2.095e+01	GT:AD:DP:GQ:PL	0/1:12,11:23:63:96,0,63
chrXII	1062367	.	C	T	101.26	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.16;MQ0=1;QD=14.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,6:7:15:134,15,0
chrXII	1062441	.	G	A	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DP=10;Dels=0.00;FS=7.068;HaplotypeScore=3.7709;MLEAC=1;MLEAF=0.500;MQ=25.99;MQ0=2;MQRankSum=-0.684;QD=1.04;ReadPosRankSum=1.221;SB=-1.625e+01	GT:AD:DP:GQ:PL	0/1:3,7:10:40:40,0,70
chrXII	1062470	.	T	A	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;DP=31;Dels=0.00;FS=20.187;HaplotypeScore=5.8128;MLEAC=1;MLEAF=0.500;MQ=23.68;MQ0=2;MQRankSum=2.399;QD=0.65;ReadPosRankSum=2.113;SB=-5.655e-03	GT:AD:DP:GQ:PL	0/1:28,3:31:50:50,0,234
chrXII	1062474	.	A	T	211.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DP=31;Dels=0.03;FS=22.143;HaplotypeScore=5.8128;MLEAC=1;MLEAF=0.500;MQ=23.68;MQ0=2;MQRankSum=-2.080;QD=6.81;ReadPosRankSum=-2.600;SB=-3.802e+01	GT:AD:DP:GQ:PL	0/1:3,27:30:50:241,0,50
chrXII	1062491	.	G	A	104.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;DP=40;Dels=0.00;FS=2.210;HaplotypeScore=10.7235;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=2;MQRankSum=-3.296;QD=2.60;ReadPosRankSum=1.279;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:18,17:40:99:134,0,155
chrXII	1062492	.	A	G	281.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;DP=40;Dels=0.00;FS=39.525;HaplotypeScore=10.7235;MLEAC=1;MLEAF=0.500;MQ=25.24;MQ0=2;MQRankSum=-1.900;QD=7.03;ReadPosRankSum=-0.130;SB=-3.102e+01	GT:AD:DP:GQ:PL	0/1:7,33:40:81:311,0,81
chrXII	1062509	.	C	T	195.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.346;DP=46;Dels=0.00;FS=9.387;HaplotypeScore=18.3774;MLEAC=1;MLEAF=0.500;MQ=27.68;MQ0=0;MQRankSum=1.339;QD=4.24;ReadPosRankSum=-0.825;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:27,19:46:99:225,0,327
chrXII	1062510	.	A	T	184.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DP=48;Dels=0.00;FS=9.093;HaplotypeScore=17.4040;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=0;MQRankSum=1.940;QD=3.83;ReadPosRankSum=-0.316;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:29,19:48:99:214,0,388
chrXII	1062511	.	A	G	168.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;DP=48;Dels=0.00;FS=17.410;HaplotypeScore=17.4040;MLEAC=1;MLEAF=0.500;MQ=29.73;MQ0=0;MQRankSum=1.139;QD=3.50;ReadPosRankSum=-0.671;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,18:48:99:198,0,391
chrXII	1062527	.	A	T	211.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.274;DP=66;Dels=0.00;FS=21.599;HaplotypeScore=16.2528;MLEAC=1;MLEAF=0.500;MQ=31.51;MQ0=1;MQRankSum=1.445;QD=3.20;ReadPosRankSum=0.748;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,27:66:99:241,0,327
chrXII	1062543	.	A	T	218.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;DP=69;Dels=0.00;FS=31.747;HaplotypeScore=63.3330;MLEAC=1;MLEAF=0.500;MQ=34.98;MQ0=1;MQRankSum=0.056;QD=3.16;ReadPosRankSum=1.772;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,30:69:99:248,0,564
chrXII	1062544	.	A	G	232.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=70;Dels=0.00;FS=31.579;HaplotypeScore=64.3277;MLEAC=1;MLEAF=0.500;MQ=35.46;MQ0=1;MQRankSum=-0.793;QD=3.31;ReadPosRankSum=1.979;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:40,30:70:99:262,0,553
chrXII	1062545	.	C	A	286.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.928;DP=70;Dels=0.00;FS=26.691;HaplotypeScore=64.3277;MLEAC=1;MLEAF=0.500;MQ=35.46;MQ0=1;MQRankSum=2.330;QD=4.09;ReadPosRankSum=-2.010;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:43,27:70:99:316,0,482
chrXII	1062553	.	A	G	199.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;DP=66;Dels=0.00;FS=31.773;HaplotypeScore=25.4496;MLEAC=1;MLEAF=0.500;MQ=37.65;MQ0=1;MQRankSum=-2.563;QD=3.02;ReadPosRankSum=1.888;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,28:66:99:229,0,590
chrXII	1062555	.	A	C	188.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.365;DP=66;Dels=0.00;FS=31.773;HaplotypeScore=25.4496;MLEAC=1;MLEAF=0.500;MQ=37.65;MQ0=1;MQRankSum=-2.192;QD=2.85;ReadPosRankSum=1.517;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,28:66:99:218,0,612
chrXII	1062571	.	T	C	127.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;DP=78;Dels=0.00;FS=32.324;HaplotypeScore=26.0366;MLEAC=1;MLEAF=0.500;MQ=39.34;MQ0=1;MQRankSum=-2.805;QD=1.63;ReadPosRankSum=0.619;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,28:78:99:157,0,746
chrXII	1062580	.	T	C	314.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;DP=78;Dels=0.00;FS=4.060;HaplotypeScore=40.6094;MLEAC=1;MLEAF=0.500;MQ=39.03;MQ0=1;MQRankSum=-4.253;QD=4.03;ReadPosRankSum=-0.356;SB=-1.800e+02	GT:AD:DP:GQ:PL	0/1:37,41:78:99:344,0,438
chrXII	1062583	.	C	T	117.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;DP=74;Dels=0.00;FS=32.697;HaplotypeScore=37.6538;MLEAC=1;MLEAF=0.500;MQ=39.92;MQ0=1;MQRankSum=-3.137;QD=1.58;ReadPosRankSum=-1.344;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,28:74:99:147,0,760
chrXII	1062585	.	C	T	83.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.505;DP=75;Dels=0.00;FS=32.226;HaplotypeScore=35.7070;MLEAC=1;MLEAF=0.500;MQ=40.25;MQ0=1;MQRankSum=-3.071;QD=1.11;ReadPosRankSum=-1.432;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:47,28:75:99:113,0,724
chrXII	1062600	.	A	T	225.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=32.1542;MLEAC=1;MLEAF=0.500;MQ=39.39;MQ0=1;MQRankSum=-3.775;QD=2.47;ReadPosRankSum=-1.201;SB=-1.630e+02	GT:AD:DP:GQ:PL	0/1:58,33:91:99:255,0,721
chrXII	1062706	.	T	C	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=4.6415;MLEAC=2;MLEAF=1.00;MQ=13.07;MQ0=4;QD=1.15;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,19:19:6:53,6,0
chrXII	1062847	.	C	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.93;MQ0=0;MQRankSum=0.727;QD=3.01;ReadPosRankSum=0.727;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:1,3:4:6:43,6,0
chrXII	1062865	.	A	T	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.93;MQ0=0;MQRankSum=0.727;QD=3.01;ReadPosRankSum=0.727;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:1,3:4:6:43,6,0
chrXII	1062868	.	C	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.93;MQ0=0;MQRankSum=0.727;QD=3.01;ReadPosRankSum=0.727;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:1,3:4:6:43,6,0
chrXII	1062869	.	C	A	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.95;MQ0=0;QD=2.41;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,3:5:6:43,6,0
chrXII	1062881	.	T	C	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.876;DP=10;Dels=0.00;FS=6.854;HaplotypeScore=2.7776;MLEAC=2;MLEAF=1.00;MQ=10.80;MQ0=1;MQRankSum=1.881;QD=1.20;ReadPosRankSum=1.307;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:6,4:10:6:43,6,0
chrXII	1062886	.	C	A	17.09	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;DP=12;Dels=0.00;FS=2.463;HaplotypeScore=2.7776;MLEAC=1;MLEAF=0.500;MQ=15.41;MQ0=1;MQRankSum=0.143;QD=1.42;ReadPosRankSum=-2.181;SB=-8.222e-03	GT:AD:DP:GQ:PL	0/1:6,6:12:31:47,0,31
chrXII	1062890	.	T	C	11.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;DP=16;Dels=0.00;FS=1.987;HaplotypeScore=3.7733;MLEAC=1;MLEAF=0.500;MQ=17.36;MQ0=2;MQRankSum=0.421;QD=0.71;ReadPosRankSum=-1.792;SB=-6.526e-03	GT:AD:DP:GQ:PL	0/1:8,8:16:41:41,0,55
chrXII	1062942	.	C	T	141.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.731;DP=23;Dels=0.00;FS=3.299;HaplotypeScore=2.7789;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=4;MQRankSum=0.598;QD=6.14;ReadPosRankSum=0.199;SB=1.99	GT:AD:DP:GQ:PL	1/1:4,19:23:18:174,18,0
chrXII	1062975	.	C	T	45.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;DP=24;Dels=0.00;FS=9.565;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=20.59;MQ0=3;MQRankSum=1.506;QD=1.88;ReadPosRankSum=-0.317;SB=-3.001e+01	GT:AD:DP:GQ:PL	0/1:16,8:24:35:75,0,35
chrXII	1062988	.	A	C	76.51	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.82;MQ0=0;QD=3.64;SB=-3.051e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:12:109,12,0
chrXII	1063170	.	C	T	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.922;DP=16;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.02;MQ0=9;MQRankSum=1.495;QD=1.18;ReadPosRankSum=-1.495;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:14,2:16:6:50,6,0
chrXII	1063662	.	T	C	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.27;MQ0=2;MQRankSum=0.731;QD=3.54;ReadPosRankSum=0.731;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,5:7:6:56,6,0
chrXII	1063785	.	C	T	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.29;MQ0=0;QD=4.65;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,3:3:6:45,6,0
chrXII	1063800	.	A	G	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.79;MQ0=0;QD=1.99;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:0,7:7:6:45,6,0
chrXII	1063969	.	C	T	77.51	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=4.8047;MLEAC=2;MLEAF=1.00;MQ=19.93;MQ0=4;QD=3.52;SB=-5.139e+01	GT:AD:DP:GQ:PL	1/1:1,20:22:12:110,12,0
chrXII	1064013	.	A	C	75.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=8.7341;MLEAC=2;MLEAF=1.00;MQ=20.52;MQ0=4;MQRankSum=1.185;QD=3.28;ReadPosRankSum=-1.066;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:4,18:23:12:108,12,0
chrXII	1064124	.	A	T	168.06	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=6.8138;MLEAC=2;MLEAF=1.00;MQ=24.47;MQ0=0;QD=9.34;SB=-1.471e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:21:201,21,0
chrXII	1064133	.	G	A	248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.3307;MLEAC=2;MLEAF=1.00;MQ=24.75;MQ0=0;MQRankSum=0.315;QD=8.86;ReadPosRankSum=1.576;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:1,26:28:30:281,30,0
chrXII	1064156	.	A	G	1035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.153;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=25.41;MQ0=3;MQRankSum=-1.121;QD=14.58;ReadPosRankSum=1.325;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1068,120,0
chrXII	1064192	.	A	T	190.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;DP=119;Dels=0.00;FS=1.624;HaplotypeScore=16.3228;MLEAC=1;MLEAF=0.500;MQ=23.08;MQ0=3;MQRankSum=-4.569;QD=1.60;ReadPosRankSum=-0.789;SB=-1.830e+02	GT:AD:DP:GQ:PL	0/1:66,53:119:99:220,0,1162
chrXII	1064224	.	C	T	1341	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.7924;MLEAC=2;MLEAF=1.00;MQ=22.32;MQ0=3;QD=13.02;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1374,153,0
chrXII	1064251	.	A	G	175.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;DP=62;Dels=0.00;FS=16.907;HaplotypeScore=37.9705;MLEAC=1;MLEAF=0.500;MQ=18.56;MQ0=0;MQRankSum=1.151;QD=2.82;ReadPosRankSum=-1.443;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,23:62:71:205,0,71
chrXII	1064255	.	C	T	114.02	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;DP=50;Dels=0.00;FS=21.949;HaplotypeScore=37.9168;MLEAC=1;MLEAF=0.500;MQ=16.96;MQ0=0;MQRankSum=2.629;QD=2.28;ReadPosRankSum=-1.124;SB=-1.736e-02	GT:AD:DP:GQ:PL	0/1:28,22:50:23:144,0,23
chrXII	1064257	.	T	C	111.02	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;DP=55;Dels=0.00;FS=27.391;HaplotypeScore=35.1074;MLEAC=1;MLEAF=0.500;MQ=16.95;MQ0=0;MQRankSum=2.820;QD=2.02;ReadPosRankSum=1.743;SB=-1.258e+00	GT:AD:DP:GQ:PL	0/1:27,28:55:24:141,0,24
chrXII	1064262	.	G	A	84.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;DP=42;Dels=0.00;FS=15.714;HaplotypeScore=38.4135;MLEAC=1;MLEAF=0.500;MQ=16.98;MQ0=0;MQRankSum=0.682;QD=2.00;ReadPosRankSum=-1.011;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:23,19:42:44:114,0,44
chrXII	1064268	.	T	C	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;DP=44;Dels=0.00;FS=4.792;HaplotypeScore=43.3757;MLEAC=1;MLEAF=0.500;MQ=19.48;MQ0=0;MQRankSum=-0.726;QD=0.32;ReadPosRankSum=3.951;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,18:44:44:44,0,178
chrXII	1064276	.	C	T	434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.030;DP=55;Dels=0.00;FS=8.884;HaplotypeScore=32.7283;MLEAC=2;MLEAF=1.00;MQ=18.59;MQ0=2;MQRankSum=2.262;QD=7.89;ReadPosRankSum=1.386;SB=-3.109e+02	GT:AD:DP:GQ:PL	1/1:9,46:55:30:467,30,0
chrXII	1064292	.	T	A	650	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=64;Dels=0.00;FS=5.582;HaplotypeScore=40.3896;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=2;MQRankSum=-2.592;QD=10.16;ReadPosRankSum=2.887;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:84:683,84,0
chrXII	1064302	.	G	T	276.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=90;Dels=0.00;FS=16.361;HaplotypeScore=70.8508;MLEAC=1;MLEAF=0.500;MQ=21.55;MQ0=7;MQRankSum=2.347;QD=3.07;ReadPosRankSum=-5.296;SB=-3.001e+01	GT:AD:DP:GQ:PL	0/1:58,31:90:99:306,0,602
chrXII	1064308	.	G	A	282.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.128;DP=100;Dels=0.00;FS=57.505;HaplotypeScore=48.2174;MLEAC=1;MLEAF=0.500;MQ=20.93;MQ0=8;MQRankSum=-2.428;QD=2.82;ReadPosRankSum=6.382;SB=-9.800e+01	GT:AD:DP:GQ:PL	0/1:51,44:100:99:312,0,642
chrXII	1064309	.	A	G	282.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.713;DP=100;Dels=0.00;FS=41.274;HaplotypeScore=48.2174;MLEAC=1;MLEAF=0.500;MQ=20.93;MQ0=8;MQRankSum=-1.006;QD=2.82;ReadPosRankSum=6.602;SB=-9.800e+01	GT:AD:DP:GQ:PL	0/1:56,38:100:99:312,0,660
chrXII	1064310	.	A	G	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.329;DP=103;Dels=0.00;FS=26.435;HaplotypeScore=49.7947;MLEAC=1;MLEAF=0.500;MQ=21.21;MQ0=8;MQRankSum=0.870;QD=0.19;ReadPosRankSum=-4.220;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,17:103:50:50,0,953
chrXII	1064344	.	T	G	241.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.048;DP=109;Dels=0.00;FS=8.953;HaplotypeScore=59.5501;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=12;MQRankSum=0.482;QD=2.21;ReadPosRankSum=6.083;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:78,31:109:99:271,0,1079
chrXII	1064345	.	G	A	293.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;DP=109;Dels=0.00;FS=31.400;HaplotypeScore=59.5501;MLEAC=1;MLEAF=0.500;MQ=21.13;MQ0=12;MQRankSum=1.934;QD=2.69;ReadPosRankSum=3.058;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:80,29:109:99:323,0,970
chrXII	1064354	.	G	A	273.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DP=101;Dels=0.00;FS=15.762;HaplotypeScore=65.1012;MLEAC=1;MLEAF=0.500;MQ=21.58;MQ0=12;MQRankSum=0.076;QD=2.70;ReadPosRankSum=0.641;SB=-2.401e+01	GT:AD:DP:GQ:PL	0/1:66,34:101:99:303,0,892
chrXII	1064363	.	G	A	116.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.380;DP=91;Dels=0.00;FS=33.928;HaplotypeScore=32.3634;MLEAC=1;MLEAF=0.500;MQ=21.72;MQ0=12;MQRankSum=-3.161;QD=1.27;ReadPosRankSum=-2.521;SB=-4.701e+01	GT:AD:DP:GQ:PL	0/1:63,28:91:99:146,0,873
chrXII	1064373	.	A	G	385.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;DP=74;Dels=0.00;FS=4.967;HaplotypeScore=16.3785;MLEAC=1;MLEAF=0.500;MQ=22.82;MQ0=10;MQRankSum=1.052;QD=5.20;ReadPosRankSum=2.185;SB=-3.601e+01	GT:AD:DP:GQ:PL	0/1:42,32:74:99:415,0,444
chrXII	1064375	.	T	A	1153	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.6727;MLEAC=2;MLEAF=1.00;MQ=22.82;MQ0=10;QD=15.58;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1186,149,0
chrXII	1064389	.	T	C	42.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9362;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=7;MQRankSum=0.727;QD=0.75;ReadPosRankSum=-1.464;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:38,18:56:72:72,0,494
chrXII	1064408	.	A	G	108.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=22;Dels=0.00;FS=3.139;HaplotypeScore=9.7379;MLEAC=2;MLEAF=1.00;MQ=20.52;MQ0=3;MQRankSum=-1.262;QD=4.92;ReadPosRankSum=1.926;SB=-8.711e+01	GT:AD:DP:GQ:PL	1/1:2,20:22:18:141,18,0
chrXII	1064409	.	A	G	111.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.583;DP=20;Dels=0.00;FS=6.422;HaplotypeScore=7.9559;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=3;MQRankSum=1.323;QD=5.56;ReadPosRankSum=2.583;SB=-1.081e+02	GT:AD:DP:GQ:PL	1/1:3,17:20:18:144,18,0
chrXII	1064435	.	T	A	126.06	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=8.6672;MLEAC=2;MLEAF=1.00;MQ=21.93;MQ0=0;QD=7.00;SB=-1.081e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:21:159,21,0
chrXII	1064439	.	A	G	54.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;DP=23;Dels=0.00;FS=3.821;HaplotypeScore=14.1057;MLEAC=1;MLEAF=0.500;MQ=20.58;MQ0=0;MQRankSum=-0.534;QD=2.35;ReadPosRankSum=1.202;SB=-1.455e+01	GT:AD:DP:GQ:PL	0/1:13,9:23:56:84,0,56
chrXII	1064451	.	C	G	266.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.604;DP=43;Dels=0.00;FS=3.462;HaplotypeScore=18.7916;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=2;MQRankSum=0.829;QD=6.19;ReadPosRankSum=1.475;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:22,19:43:3:296,3,0
chrXII	1064493	.	A	C	763	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=14.8946;MLEAC=2;MLEAF=1.00;MQ=17.85;MQ0=5;MQRankSum=1.343;QD=9.66;ReadPosRankSum=1.933;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:5,73:79:99:796,99,0
chrXII	1064503	.	A	G	551.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.127;DP=85;Dels=0.00;FS=1.892;HaplotypeScore=9.6418;MLEAC=2;MLEAF=1.00;MQ=17.07;MQ0=6;MQRankSum=4.460;QD=6.49;ReadPosRankSum=1.907;SB=-3.126e+01	GT:AD:DP:GQ:PL	1/1:33,52:85:15:584,15,0
chrXII	1064514	.	A	G	734	filter	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=16.53;MQ0=6;QD=7.98;SB=-4.301e+01	GT:AD:DP:GQ:PL	1/1:0,92:92:93:767,93,0
chrXII	1064559	.	A	G	185.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.844;DP=79;Dels=0.00;FS=4.297;HaplotypeScore=33.9505;MLEAC=1;MLEAF=0.500;MQ=19.90;MQ0=11;MQRankSum=3.815;QD=2.34;ReadPosRankSum=2.222;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:60,19:79:99:215,0,285
chrXII	1064587	.	C	T	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;DP=60;Dels=0.05;FS=3.096;HaplotypeScore=51.6070;MLEAC=1;MLEAF=0.500;MQ=22.37;MQ0=9;MQRankSum=-3.426;QD=0.22;ReadPosRankSum=-1.053;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,25:57:43:43,0,270
chrXII	1064610	.	G	A	83.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=21.9979;MLEAC=1;MLEAF=0.500;MQ=24.36;MQ0=6;MQRankSum=-1.059;QD=1.48;ReadPosRankSum=-0.953;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:41,15:56:99:113,0,328
chrXII	1064643	.	T	C	488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=48;Dels=0.00;FS=19.956;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=21.86;MQ0=3;MQRankSum=0.688;QD=10.17;ReadPosRankSum=2.341;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:2,46:48:63:521,63,0
chrXII	1064661	.	A	C	290.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990;DP=49;Dels=0.00;FS=20.166;HaplotypeScore=35.8353;MLEAC=1;MLEAF=0.500;MQ=20.01;MQ0=0;MQRankSum=2.170;QD=5.92;ReadPosRankSum=-4.550;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,25:49:88:320,0,88
chrXII	1064662	.	T	G	306.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.130;DP=50;Dels=0.00;FS=20.166;HaplotypeScore=38.7555;MLEAC=1;MLEAF=0.500;MQ=19.81;MQ0=1;MQRankSum=1.750;QD=6.12;ReadPosRankSum=-4.490;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,25:50:88:336,0,88
chrXII	1064679	.	A	T	17.09	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;DP=30;Dels=0.00;FS=16.660;HaplotypeScore=27.1198;MLEAC=1;MLEAF=0.500;MQ=17.26;MQ0=2;MQRankSum=0.968;QD=0.57;ReadPosRankSum=0.692;SB=-6.563e-03	GT:AD:DP:GQ:PL	0/1:22,7:30:47:47,0,47
chrXII	1064687	.	G	A	45.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;DP=31;Dels=0.00;FS=8.641;HaplotypeScore=39.8362;MLEAC=1;MLEAF=0.500;MQ=16.76;MQ0=3;MQRankSum=-2.775;QD=1.45;ReadPosRankSum=1.740;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:11,20:31:25:75,0,25
chrXII	1064693	.	A	T	42.42	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=29;Dels=0.00;FS=56.838;HaplotypeScore=45.2233;MLEAC=1;MLEAF=0.500;MQ=15.80;MQ0=3;MQRankSum=2.082;QD=1.46;ReadPosRankSum=3.399;SB=-3.413e+00	GT:AD:DP:GQ:PL	0/1:19,10:29:7:72,0,7
chrXII	1064716	.	A	G	102.13	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=9.7513;MLEAC=2;MLEAF=1.00;MQ=14.98;MQ0=4;QD=3.93;SB=-7.512e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:18:135,18,0
chrXII	1064729	.	A	G	25.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;DP=36;Dels=0.00;FS=31.491;HaplotypeScore=12.7946;MLEAC=1;MLEAF=0.500;MQ=14.86;MQ0=6;MQRankSum=2.070;QD=0.70;ReadPosRankSum=-0.204;SB=-9.248e-03	GT:AD:DP:GQ:PL	0/1:30,6:36:29:55,0,29
chrXII	1064738	.	G	A	333	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.6473;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=6;QD=7.24;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:42:366,42,0
chrXII	1064756	.	A	C	311.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;DP=48;Dels=0.00;FS=27.881;HaplotypeScore=6.6914;MLEAC=1;MLEAF=0.500;MQ=21.73;MQ0=6;MQRankSum=3.780;QD=6.48;ReadPosRankSum=0.577;SB=-1.410e+02	GT:AD:DP:GQ:PL	0/1:33,15:48:99:341,0,122
chrXII	1064781	.	A	G	378.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;DP=46;Dels=0.00;FS=6.348;HaplotypeScore=30.4556;MLEAC=1;MLEAF=0.500;MQ=23.38;MQ0=4;MQRankSum=0.109;QD=8.22;ReadPosRankSum=2.694;SB=-1.890e+02	GT:AD:DP:GQ:PL	0/1:13,33:46:41:408,0,41
chrXII	1064833	.	G	A	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.194;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=23.8413;MLEAC=2;MLEAF=1.00;MQ=21.72;MQ0=0;MQRankSum=0.492;QD=0.73;ReadPosRankSum=1.897;SB=1.24	GT:AD:DP:GQ:PL	1/1:16,2:19:6:45,6,0
chrXII	1064841	.	G	T	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=16.1133;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=1;MQRankSum=1.398;QD=1.19;ReadPosRankSum=0.391;SB=1.24	GT:AD:DP:GQ:PL	1/1:17,3:20:6:55,6,0
chrXII	1064853	.	T	A	28.77	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.159;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=4.8325;MLEAC=2;MLEAF=1.00;MQ=19.45;MQ0=2;MQRankSum=0.903;QD=1.44;ReadPosRankSum=-1.646;SB=1.24	GT:AD:DP:GQ:PL	1/1:16,4:20:6:60,6,0
chrXII	1065041	.	T	G	44.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=15.3194;MLEAC=1;MLEAF=0.500;MQ=21.91;MQ0=11;MQRankSum=-1.635;QD=1.05;ReadPosRankSum=0.904;SB=-5.101e+01	GT:AD:DP:GQ:PL	0/1:28,14:42:74:74,0,100
chrXII	1065068	.	G	T	101.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DP=50;Dels=0.00;FS=57.926;HaplotypeScore=30.4837;MLEAC=1;MLEAF=0.500;MQ=23.43;MQ0=12;MQRankSum=-1.769;QD=2.02;ReadPosRankSum=2.093;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,19:50:79:131,0,79
chrXII	1065086	.	T	G	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;DP=26;Dels=0.04;FS=13.397;HaplotypeScore=23.0742;MLEAC=1;MLEAF=0.500;MQ=29.77;MQ0=2;MQRankSum=-0.186;QD=1.19;ReadPosRankSum=-0.112;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,7:25:61:61,0,79
chrXII	1065161	.	C	A	679.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.250;DP=183;Dels=0.00;FS=244.127;HaplotypeScore=56.2108;MLEAC=1;MLEAF=0.500;MQ=20.75;MQ0=54;MQRankSum=-0.953;QD=3.71;ReadPosRankSum=-8.269;SB=-6.512e-03	GT:AD:DP:GQ:PL	0/1:46,130:183:99:709,0,129
chrXII	1065225	.	A	G	759.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;DP=262;Dels=0.01;FS=106.920;HaplotypeScore=30.6745;MLEAC=1;MLEAF=0.500;MQ=15.26;MQ0=137;MQRankSum=-0.041;QD=2.90;ReadPosRankSum=3.475;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,223:260:99:789,0,164
chrXII	1065504	.	T	C	215.19	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.167;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.1034;MLEAC=2;MLEAF=1.00;MQ=16.69;MQ0=25;MQRankSum=-1.167;QD=2.87;ReadPosRankSum=-1.591;SB=-1.202e+00	GT:AD:DP:GQ:PL	1/1:2,71:75:8:247,8,0
chrXII	1065544	.	G	A	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=11.60;MQ0=42;QD=0.52;SB=-1.740e+00	GT:AD:DP:GQ:PL	1/1:0,49:50:6:57,6,0
chrXIII	5522	.	C	A	24.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.7740;MLEAC=1;MLEAF=0.500;MQ=14.02;MQ0=66;MQRankSum=-0.584;QD=0.29;ReadPosRankSum=-1.434;SB=-8.006e+00	GT:AD:DP:GQ:PL	0/1:25,59:84:54:54,0,136
chrXIII	5523	.	A	G	21.04	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.7405;MLEAC=1;MLEAF=0.500;MQ=14.19;MQ0=64;MQRankSum=-0.584;QD=0.26;ReadPosRankSum=-1.752;SB=-8.007e+00	GT:AD:DP:GQ:PL	0/1:28,54:82:51:51,0,166
chrXIII	5532	.	T	G	22.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DP=79;Dels=0.01;FS=2.197;HaplotypeScore=55.0302;MLEAC=1;MLEAF=0.500;MQ=14.46;MQ0=61;MQRankSum=-0.283;QD=0.28;ReadPosRankSum=-1.302;SB=-5.007e+00	GT:AD:DP:GQ:PL	0/1:73,5:78:52:52,0,165
chrXIII	8113	.	G	A	52.97	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=18.05;MQ0=5;QD=5.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:5,4:9:9:85,9,0
chrXIII	8214	.	A	G	411	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.18;MQ0=5;QD=17.87;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:4,19:23:51:444,51,0
chrXIII	8262	.	A	G	304	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.06;MQ0=5;QD=15.20;SB=-7.065e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:39:337,39,0
chrXIII	8279	.	G	C	261	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=4;QD=16.31;SB=-8.689e-03	GT:AD:DP:GQ:PL	1/1:0,16:16:33:294,33,0
chrXIII	8317	.	G	A	398	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.87;MQ0=5;QD=17.30;SB=-6.622e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:48:431,48,0
chrXIII	8385	.	G	A	549	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=1;QD=15.69;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:60:582,60,0
chrXIII	8415	.	T	G	685	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.63;MQ0=0;QD=11.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:81:718,81,0
chrXIII	8429	.	C	G	720	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=11.61;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:81:753,81,0
chrXIII	8431	.	G	T	701	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=55.6226;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=0;QD=11.31;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:81:734,81,0
chrXIII	8449	.	A	G	808	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=10.63;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:90:841,90,0
chrXIII	8450	.	C	T	853	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=11.22;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:93:886,93,0
chrXIII	8461	.	A	T	936	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=0;QD=10.64;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:969,108,0
chrXIII	8537	.	A	G	1150	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=23.00;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1183,129,0
chrXIII	8543	.	T	C	1083	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=22.10;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1116,123,0
chrXIII	8656	.	C	T	1591	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=22.73;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1624,171,0
chrXIII	8679	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=0;QD=20.80;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1676,186,0
chrXIII	8687	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=20.43;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1708,189,0
chrXIII	8859	.	A	G	1869	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=23.07;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1902,207,0
chrXIII	8872	.	C	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=55.4186;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=20.78;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1384,147,0
chrXIII	8939	.	A	G	984	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.79;MQ0=0;QD=15.62;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1017,111,0
chrXIII	8946	.	G	A	940	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.07;MQ0=0;QD=15.16;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:973,105,0
chrXIII	8949	.	A	G	899	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;MQRankSum=-0.907;QD=14.27;ReadPosRankSum=1.677;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:932,102,0
chrXIII	8968	.	A	T	878	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;QD=14.88;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:96:911,96,0
chrXIII	8973	.	G	T	923	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.18;MQ0=0;QD=15.38;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:956,102,0
chrXIII	9141	.	C	T	1642	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=69.8576;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=21.89;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1675,183,0
chrXIII	9200	.	A	G	1843	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=9.7033;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.18;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1876,204,0
chrXIII	9278	.	C	T	1597	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=22.81;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1630,171,0
chrXIII	9319	.	C	G	1790	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.95;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1823,201,0
chrXIII	9360	.	A	G	1560	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.94;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1593,174,0
chrXIII	9517	.	A	G	947	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=15.78;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:980,108,0
chrXIII	9525	.	A	C	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.01;FS=0.000;HaplotypeScore=56.8896;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;MQRankSum=-0.049;QD=13.65;ReadPosRankSum=1.534;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1002,111,0
chrXIII	9709	.	T	C	1525	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.89;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1558,171,0
chrXIII	9730	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=1.481;QD=19.50;ReadPosRankSum=1.682;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1398,153,0
chrXIII	9746	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=19.02;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1250,135,0
chrXIII	9755	.	C	T	1316	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=18.54;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1349,144,0
chrXIII	9829	.	T	C	1385	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.98;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1418,159,0
chrXIII	9880	.	C	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.73;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1082,114,0
chrXIII	9896	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=19.03;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1156,123,0
chrXIII	9944	.	T	C	1071	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.3052;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.73;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1104,123,0
chrXIII	10120	.	C	T	1422	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.22;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1455,159,0
chrXIII	10131	.	T	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.42;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1535,159,0
chrXIII	10159	.	A	G	1248	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=18.91;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1281,138,0
chrXIII	10239	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.672;QD=23.41;ReadPosRankSum=1.662;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1180,126,0
chrXIII	10479	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=3.010;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.050;QD=19.00;ReadPosRankSum=1.680;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1287,141,0
chrXIII	10737	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.2737;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.30;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1524,162,0
chrXIII	10868	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.58;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1286,135,0
chrXIII	10941	.	T	C	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=3.015;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.180;QD=20.94;ReadPosRankSum=2.311;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1897,207,0
chrXIII	11152	.	C	G	1891	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7932;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.35;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1924,210,0
chrXIII	11305	.	A	G	1694	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.41;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1727,186,0
chrXIII	11319	.	T	A	1664	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=18.91;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1697,180,0
chrXIII	11716	.	G	A	1985	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.08;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2018,210,0
chrXIII	11831	.	T	C	1662	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.77;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1695,186,0
chrXIII	11972	.	C	T	1758	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.08;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1791,189,0
chrXIII	12086	.	A	T	1146	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.76;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1179,129,0
chrXIII	12215	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.10;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1007,108,0
chrXIII	12311	.	A	G	1964	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.95;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1997,219,0
chrXIII	12440	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.02;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1378,147,0
chrXIII	12902	.	T	G	1922	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.13;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1955,213,0
chrXIII	13034	.	G	A	1828	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.44;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1861,198,0
chrXIII	13064	.	A	G	1769	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.68;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1802,198,0
chrXIII	13242	.	T	G	2511	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.04;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2544,285,0
chrXIII	13364	.	C	T	2647	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.28;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2680,285,0
chrXIII	13439	.	A	T	1915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=13.7368;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=0.779;QD=23.35;ReadPosRankSum=1.689;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1948,207,0
chrXIII	13530	.	T	C	2861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=0.831;QD=23.07;ReadPosRankSum=1.676;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:1,122:124:99:2894,321,0
chrXIII	13572	.	T	C	4002.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=24.86;SB=-2.137e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4002,435,0
chrXIII	13601	.	C	T	3831.01	PASS	AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=21.05;SB=-2.171e+03	GT:AD:DP:GQ:PL	1/1:0,182:182:99:3831,411,0
chrXIII	13605	.	A	C	3863.01	PASS	AC=2;AF=1.00;AN=2;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.11;SB=-2.235e+03	GT:AD:DP:GQ:PL	1/1:0,181:183:99:3863,423,0
chrXIII	13809	.	C	G	1583	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.07;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1616,180,0
chrXIII	13831	.	A	G	2023	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.23;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2056,228,0
chrXIII	13852	.	T	A	2588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=118;Dels=0.00;FS=5.911;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-1.022;QD=21.93;ReadPosRankSum=1.643;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2621,282,0
chrXIII	13907	.	C	T	3167	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=4.6137;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.19;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,165:165:99:3200,339,0
chrXIII	13915	.	G	A	3114	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=19.58;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,159:159:99:3147,336,0
chrXIII	13986	.	C	T	2966	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=11.1993;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.89;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:2999,309,0
chrXIII	14341	.	G	C	2139	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=21.18;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2172,237,0
chrXIII	14478	.	G	C	1991	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.53;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2024,225,0
chrXIII	14529	.	G	A	1917	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=21.07;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1950,207,0
chrXIII	14562	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=18.49;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1549,177,0
chrXIII	14565	.	A	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=17.97;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1417,156,0
chrXIII	14580	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=14.60;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:982,111,0
chrXIII	14592	.	A	T	830	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=13.61;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:863,99,0
chrXIII	14664	.	C	T	2288	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.8676;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.21;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2321,246,0
chrXIII	14705	.	G	A	2567	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.39;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2600,273,0
chrXIII	14767	.	C	T	2483	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.97;SB=-1.485e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2516,264,0
chrXIII	14933	.	C	A	2189	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=17.10;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,126:128:99:2222,243,0
chrXIII	14934	.	G	T	1828	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=14.28;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:1861,210,0
chrXIII	15055	.	A	T	3336.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.66;SB=-1.590e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3336,357,0
chrXIII	15357	.	A	G	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=12.1914;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.595;QD=19.80;ReadPosRankSum=1.698;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2053,222,0
chrXIII	15470	.	C	T	1378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.306;QD=20.88;ReadPosRankSum=0.240;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1411,147,0
chrXIII	15705	.	G	A	987	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.31;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1020,111,0
chrXIII	15885	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=23.08;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1741,183,0
chrXIII	16224	.	T	C	1875	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.59;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1908,210,0
chrXIII	16287	.	G	A	1986	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.07;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2019,216,0
chrXIII	16314	.	C	T	1557	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.96;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1590,168,0
chrXIII	16338	.	G	A	1151	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.55;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1184,132,0
chrXIII	16406	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.25;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1138,123,0
chrXIII	16498	.	G	T	633	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=10.73;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:72:666,72,0
chrXIII	16521	.	T	C	861	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=15.65;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:894,99,0
chrXIII	16638	.	T	C	2238	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.11;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2271,252,0
chrXIII	16764	.	G	A	1699	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.78;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1732,183,0
chrXIII	17364	.	T	C	1716	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.1790;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.28;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1749,195,0
chrXIII	17462	.	T	C	2275	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.06;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2308,249,0
chrXIII	17648	.	T	C	2093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.801;DP=96;Dels=0.00;FS=5.262;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.685;QD=21.80;ReadPosRankSum=2.864;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:3,93:96:99:2126,228,0
chrXIII	17699	.	A	C	1884	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=17.94;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1917,210,0
chrXIII	17708	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.247;QD=16.96;ReadPosRankSum=1.661;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:1,97:99:99:1712,195,0
chrXIII	17810	.	C	T	2079	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.12;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2112,222,0
chrXIII	17843	.	T	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.5002;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.26;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1883,204,0
chrXIII	17913	.	T	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.01;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1567,171,0
chrXIII	17955	.	T	G	1114	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.63;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1147,126,0
chrXIII	18546	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.46;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1342,141,0
chrXIII	18729	.	C	T	177.03	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=9.84;SB=-4.093e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:24:210,24,0
chrXIII	19498	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.294;HaplotypeScore=9.4455;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.206;QD=19.47;ReadPosRankSum=1.644;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1571,174,0
chrXIII	20392	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=75;Dels=0.00;FS=3.031;HaplotypeScore=5.7924;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.431;QD=18.80;ReadPosRankSum=2.384;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1443,162,0
chrXIII	20497	.	T	C	910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=53;Dels=0.00;FS=3.358;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.933;QD=17.17;ReadPosRankSum=1.666;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:943,102,0
chrXIII	21082	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.7418;MLEAC=2;MLEAF=1.00;MQ=39.01;MQ0=0;QD=19.58;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1541,174,0
chrXIII	21100	.	G	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.7157;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=17.14;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:63:99:1113,126,0
chrXIII	21105	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.15;MQ0=0;QD=19.37;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1137,126,0
chrXIII	21121	.	T	C	831	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=9.031;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;MQRankSum=1.660;QD=17.31;ReadPosRankSum=1.660;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:96:864,96,0
chrXIII	21124	.	G	A	799	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.21;MQ0=0;QD=16.31;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:87:832,87,0
chrXIII	21130	.	C	T	832	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=16.31;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:93:865,93,0
chrXIII	21139	.	A	G	810	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=0;QD=15.28;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:90:843,90,0
chrXIII	21154	.	G	A	699	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.28;MQ0=0;QD=13.71;SB=-9.401e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:78:732,78,0
chrXIII	21157	.	A	G	684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=30.25;MQ0=0;MQRankSum=1.432;QD=13.15;ReadPosRankSum=2.354;SB=-9.301e+01	GT:AD:DP:GQ:PL	1/1:2,50:52:81:717,81,0
chrXIII	21175	.	A	G	712	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.30;MQ0=0;QD=14.24;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:84:745,84,0
chrXIII	21211	.	G	A	860	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.52;MQ0=0;QD=15.93;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:893,96,0
chrXIII	21229	.	A	G	816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.96;MQ0=0;MQRankSum=-1.732;QD=16.65;ReadPosRankSum=1.662;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:90:849,90,0
chrXIII	21231	.	A	G	791	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.48;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:824,90,0
chrXIII	21241	.	A	G	773	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.16;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:87:806,87,0
chrXIII	21244	.	G	A	774	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.33;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:84:807,84,0
chrXIII	21253	.	G	A	644	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.30;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:72:677,72,0
chrXIII	21269	.	A	G	569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=2.915;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.821;QD=10.35;ReadPosRankSum=2.360;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:66:602,66,0
chrXIII	21274	.	T	A	541	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.40;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:60:574,60,0
chrXIII	21280	.	C	T	442	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.67;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:54:475,54,0
chrXIII	21286	.	C	T	432	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.82;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:51:465,51,0
chrXIII	21292	.	C	T	471	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.06;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:57:504,57,0
chrXIII	21295	.	G	A	406	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.66;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:48:439,48,0
chrXIII	21298	.	T	C	358	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=3.096;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.461;QD=7.02;ReadPosRankSum=1.664;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:42:391,42,0
chrXIII	21301	.	A	G	379	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.58;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:45:412,45,0
chrXIII	21307	.	T	C	354	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.37;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:42:387,42,0
chrXIII	21309	.	G	A	364	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.58;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:42:397,42,0
chrXIII	21310	.	T	C	343	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.106;QD=7.00;ReadPosRankSum=1.662;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:42:376,42,0
chrXIII	21316	.	A	G	366	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=7.308;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.157;QD=6.65;ReadPosRankSum=2.360;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:45:399,45,0
chrXIII	21319	.	G	A	387	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.91;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:45:420,45,0
chrXIII	21328	.	A	G	444	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.66;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:51:477,51,0
chrXIII	21331	.	G	A	444	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.40;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:51:477,51,0
chrXIII	21334	.	T	C	450	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.76;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:54:483,54,0
chrXIII	21337	.	G	C	441	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.87;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:54:474,54,0
chrXIII	21345	.	G	C	465	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.02;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:54:498,54,0
chrXIII	21370	.	A	G	444	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.66;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:51:477,51,0
chrXIII	21375	.	C	T	424	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.95;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:51:457,51,0
chrXIII	21391	.	A	G	347	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=5.78;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:42:380,42,0
chrXIII	21408	.	G	A	335	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=6.98;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:39:368,39,0
chrXIII	21409	.	T	C	290	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=6.04;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:36:323,36,0
chrXIII	21424	.	A	G	241	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;QD=5.13;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:30:274,30,0
chrXIII	21430	.	A	G	237	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=4.94;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:30:270,30,0
chrXIII	21436	.	G	A	274	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=6.09;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:33:307,33,0
chrXIII	21439	.	G	A	272	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=5.67;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:33:305,33,0
chrXIII	21454	.	T	A	268	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=5.58;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:33:301,33,0
chrXIII	21463	.	A	G	208.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=42;Dels=0.02;FS=4.667;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=0;MQRankSum=0.549;QD=4.95;ReadPosRankSum=1.648;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:27:241,27,0
chrXIII	21478	.	C	A	240	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=6.00;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:30:273,30,0
chrXIII	21480	.	A	C	244	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.324;DP=40;Dels=0.00;FS=13.135;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=1.178;QD=6.10;ReadPosRankSum=2.324;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:2,37:40:30:277,30,0
chrXIII	21490	.	A	G	233	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=5.55;SB=-1.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:30:266,30,0
chrXIII	21496	.	A	G	267	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.51;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:33:300,33,0
chrXIII	21523	.	A	G	254	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=7.06;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:33:287,33,0
chrXIII	21525	.	A	T	241	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=6.69;SB=-6.502e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:30:274,30,0
chrXIII	21531	.	C	T	269	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.22;MQ0=0;QD=7.27;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:33:302,33,0
chrXIII	21547	.	C	T	322	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=6.08;SB=-9.201e+01	GT:AD:DP:GQ:PL	1/1:0,53:53:39:355,39,0
chrXIII	21556	.	A	G	589	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=9.98;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:69:622,69,0
chrXIII	21905	.	C	T	2858	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=21.98;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2891,309,0
chrXIII	21974	.	A	G	29.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=54.8672;MLEAC=1;MLEAF=0.500;MQ=47.75;MQ0=0;MQRankSum=1.191;QD=0.63;ReadPosRankSum=-2.653;SB=-6.007e+00	GT:AD:DP:GQ:PL	0/1:42,3:46:59:59,0,72
chrXIII	23593	.	T	A	1976	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.6043;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.70;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2009,213,0
chrXIII	23712	.	A	G	2913	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=21.11;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2946,321,0
chrXIII	23724	.	A	G	2914	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.27;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2947,318,0
chrXIII	23863	.	A	G	1480	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=17.41;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1513,168,0
chrXIII	23864	.	G	A	1610	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=18.72;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1643,171,0
chrXIII	24034	.	C	T	3427.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=7.0711;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=23.16;SB=-2.033e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3427,360,0
chrXIII	24106	.	C	G	1742	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=20.99;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1775,189,0
chrXIII	24134	.	A	T	1655	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=22.36;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1688,180,0
chrXIII	24474	.	G	T	1781	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.26;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1814,186,0
chrXIII	24556	.	T	A	1163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;MQRankSum=-0.162;QD=15.30;ReadPosRankSum=1.640;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1196,135,0
chrXIII	24568	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=16.60;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1195,132,0
chrXIII	24592	.	T	C	978	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=3.068;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=45.21;MQ0=0;MQRankSum=-0.977;QD=13.58;ReadPosRankSum=2.381;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1011,111,0
chrXIII	24595	.	T	C	951	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3130;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;MQRankSum=-1.637;QD=13.03;ReadPosRankSum=1.637;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:984,111,0
chrXIII	24637	.	A	G	907	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=15.37;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:940,105,0
chrXIII	24712	.	C	A	1044	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=21.75;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1077,114,0
chrXIII	24775	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=20.53;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1162,123,0
chrXIII	24787	.	A	G	1131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;MQRankSum=-1.015;QD=18.85;ReadPosRankSum=1.374;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:1,57:60:99:1164,132,0
chrXIII	24877	.	T	G	1480	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.14;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1513,165,0
chrXIII	24982	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=69;Dels=0.00;FS=3.475;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=-0.778;QD=19.78;ReadPosRankSum=1.632;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1398,150,0
chrXIII	24997	.	T	C	1149	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=19.47;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1182,132,0
chrXIII	25021	.	C	A	807	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=16.47;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:840,90,0
chrXIII	25025	.	A	G	755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=51;Dels=0.00;FS=14.069;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=1.821;QD=14.80;ReadPosRankSum=2.862;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:3,48:51:87:788,87,0
chrXIII	25114	.	T	G	554	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=10.86;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:66:587,66,0
chrXIII	25115	.	T	C	537	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=10.53;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:66:570,66,0
chrXIII	25116	.	C	T	529	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.10;MQ0=0;QD=10.37;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:66:562,66,0
chrXIII	25125	.	C	T	721	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.56;MQ0=0;QD=11.63;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:78:754,78,0
chrXIII	25150	.	A	G	640	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.96;MQ0=0;QD=10.32;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:72:673,72,0
chrXIII	25168	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=14.40;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1142,123,0
chrXIII	25240	.	A	G	1756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;MQRankSum=1.370;QD=20.42;ReadPosRankSum=1.611;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1789,198,0
chrXIII	25294	.	A	G	1980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=0.884;QD=20.20;ReadPosRankSum=1.697;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2013,225,0
chrXIII	25594	.	A	G	1985	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=22.56;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2018,225,0
chrXIII	25638	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=20.19;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1608,174,0
chrXIII	25647	.	A	C	1361	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=17.68;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1394,153,0
chrXIII	25657	.	C	T	1306	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=16.96;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1339,147,0
chrXIII	25735	.	G	A	2290	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.1392;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.67;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2323,243,0
chrXIII	26434	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.85;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1224,129,0
chrXIII	26589	.	A	T	159.06	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.6977;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;QD=8.37;SB=-2.401e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:21:192,21,0
chrXIII	26706	.	T	C	726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.051;DP=44;Dels=0.00;FS=3.667;HaplotypeScore=14.7645;MLEAC=2;MLEAF=1.00;MQ=46.45;MQ0=0;MQRankSum=0.147;QD=16.50;ReadPosRankSum=1.905;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:3,40:44:84:759,84,0
chrXIII	26708	.	T	C	627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.002;DP=42;Dels=0.00;FS=9.555;HaplotypeScore=13.7631;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;MQRankSum=-0.488;QD=14.93;ReadPosRankSum=1.856;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:3,39:42:72:660,72,0
chrXIII	26922	.	A	C	2034	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=23.93;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2067,225,0
chrXIII	27133	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=12.775;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.806;QD=19.93;ReadPosRankSum=2.389;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1647,183,0
chrXIII	28338	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.43;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1694,183,0
chrXIII	29112	.	G	A	1084	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=17.77;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1117,117,0
chrXIII	29616	.	T	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.2585;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.12;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1314,144,0
chrXIII	29721	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.98;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1332,144,0
chrXIII	29750	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.78;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1254,132,0
chrXIII	29779	.	T	C	1175	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=3.565;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-1.316;QD=15.67;ReadPosRankSum=1.686;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1208,132,0
chrXIII	29826	.	C	T	1857	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.59;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1890,198,0
chrXIII	29848	.	G	A	2249	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.3320;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.19;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2282,243,0
chrXIII	29994	.	T	G	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0178;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.866;QD=21.03;ReadPosRankSum=1.653;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1905,210,0
chrXIII	30303	.	T	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.63;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1477,165,0
chrXIII	30379	.	T	A	1532	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.89;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1565,165,0
chrXIII	30523	.	C	T	3200	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=10.2998;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.88;SB=-1.575e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:3233,354,0
chrXIII	30585	.	G	C	1640	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:70:99:1673,183,0
chrXIII	30827	.	A	G	1731	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.1293;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.48;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1764,195,0
chrXIII	31828	.	G	A	4859.01	PASS	AC=2;AF=1.00;AN=2;DP=207;Dels=0.03;FS=0.000;HaplotypeScore=20.7219;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.47;SB=-2.501e+03	GT:AD:DP:GQ:PL	1/1:0,199:201:99:4859,505,0
chrXIII	32108	.	T	C	2402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.595;HaplotypeScore=6.6949;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.383;QD=20.02;ReadPosRankSum=1.645;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2435,264,0
chrXIII	32457	.	G	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.4979;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.87;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1744,186,0
chrXIII	32504	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.01;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1618,171,0
chrXIII	32621	.	G	A	2341	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.4168;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.72;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2374,252,0
chrXIII	32868	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.3310;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.34;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1399,153,0
chrXIII	33005	.	A	G	1480	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.6719;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.97;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1513,168,0
chrXIII	33236	.	G	A	1473	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=23.02;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1506,159,0
chrXIII	33242	.	G	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3294;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.91;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1501,162,0
chrXIII	33341	.	A	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.9522;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.27;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1543,168,0
chrXIII	33464	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=3.456;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;MQRankSum=-1.310;QD=18.40;ReadPosRankSum=1.648;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1560,177,0
chrXIII	33506	.	C	A	1984	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=24.20;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2017,213,0
chrXIII	33680	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.26;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1384,150,0
chrXIII	33731	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=19.10;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1236,129,0
chrXIII	33836	.	G	A	240	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=60.6574;MLEAC=2;MLEAF=1.00;MQ=40.62;MQ0=0;QD=3.20;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:30:273,30,0
chrXIII	34473	.	T	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.70;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1400,153,0
chrXIII	34672	.	A	G	1738	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8536;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.72;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1771,192,0
chrXIII	34777	.	G	A	1995	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=22.67;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2028,213,0
chrXIII	34804	.	C	A	1827	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=20.08;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1860,195,0
chrXIII	34805	.	T	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.58;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1844,195,0
chrXIII	36440	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.76;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1421,156,0
chrXIII	37053	.	T	C	1124	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=24.43;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1157,129,0
chrXIII	37465	.	T	C	2356	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.4199;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=22.65;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2389,267,0
chrXIII	37516	.	G	C	1806	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;QD=22.86;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1839,201,0
chrXIII	37611	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.53;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1282,135,0
chrXIII	37647	.	G	A	1178	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.42;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1211,129,0
chrXIII	37709	.	G	A	1999	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.49;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2032,216,0
chrXIII	37836	.	A	G	2139	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=20.57;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2172,237,0
chrXIII	37845	.	A	T	2041	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=19.25;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2074,225,0
chrXIII	37888	.	C	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=15.81;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1045,108,0
chrXIII	37897	.	A	T	794	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=13.93;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:87:827,87,0
chrXIII	37925	.	T	A	1121	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=19.33;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1154,117,0
chrXIII	37977	.	T	G	1136	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=19.25;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1169,129,0
chrXIII	38045	.	G	T	2942	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.7554;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=21.32;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2975,315,0
chrXIII	38072	.	C	T	3812.01	PASS	AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=22.96;SB=-1.792e+03	GT:AD:DP:GQ:PL	1/1:0,166:166:99:3812,408,0
chrXIII	38121	.	A	C	3601.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=24.17;SB=-1.875e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3601,402,0
chrXIII	39248	.	T	C	1820	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.33;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1853,204,0
chrXIII	39443	.	T	C	1973	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.93;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2006,219,0
chrXIII	39858	.	T	C	1693	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.92;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1726,195,0
chrXIII	39888	.	G	A	1864	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.67;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1897,210,0
chrXIII	39977	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-2.010e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1073,108,0
chrXIII	40087	.	T	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.67;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1687,186,0
chrXIII	40376	.	C	A	770	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.65;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:87:803,87,0
chrXIII	40406	.	A	G	784	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,33:35:90:817,90,0
chrXIII	40487	.	T	C	866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.264;QD=23.41;ReadPosRankSum=1.639;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:96:899,96,0
chrXIII	40511	.	G	A	1123	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.42;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1156,123,0
chrXIII	41051	.	G	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.38;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1701,180,0
chrXIII	41615	.	G	A	1617	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=22.77;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1650,171,0
chrXIII	42127	.	A	G	1245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=3.617;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=0.879;QD=17.54;ReadPosRankSum=1.632;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1278,141,0
chrXIII	42136	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=16.00;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:945,105,0
chrXIII	42196	.	C	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3298;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.06;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1297,147,0
chrXIII	43096	.	C	T	710	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.68;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:743,78,0
chrXIII	43166	.	A	G	1127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.163;QD=16.57;ReadPosRankSum=1.681;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1160,126,0
chrXIII	44287	.	T	C	1077	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=17.66;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1110,123,0
chrXIII	44455	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;DP=80;Dels=0.00;FS=4.407;HaplotypeScore=4.2987;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=0.736;QD=13.77;ReadPosRankSum=-1.342;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1135,123,0
chrXIII	44503	.	C	T	1784	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.27;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1817,192,0
chrXIII	45908	.	T	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1226,135,0
chrXIII	45947	.	A	G	999	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=60.79;MQ0=0;QD=17.22;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1032,114,0
chrXIII	46009	.	C	T	179.03	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=15.8925;MLEAC=2;MLEAF=1.00;MQ=44.99;MQ0=0;QD=4.71;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:24:212,24,0
chrXIII	46032	.	A	G	756	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=16.43;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:789,90,0
chrXIII	46045	.	G	A	769	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.6779;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=14.24;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:87:802,87,0
chrXIII	46074	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=17.89;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:981,102,0
chrXIII	46087	.	G	A	1037	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.94;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1070,111,0
chrXIII	46211	.	C	T	628	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=24.15;SB=-1.540e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:69:661,69,0
chrXIII	46228	.	G	A	468	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=20.35;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:54:501,54,0
chrXIII	46256	.	C	G	358	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=14.92;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:42:391,42,0
chrXIII	46262	.	T	C	432	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.40;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:51:465,51,0
chrXIII	46331	.	A	G	996	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.15;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1029,111,0
chrXIII	46758	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.34;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1485,159,0
chrXIII	47304	.	C	T	2842	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=11.2182;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.05;SB=-1.658e+03	GT:AD:DP:GQ:PL	1/1:0,133:135:99:2875,303,0
chrXIII	47637	.	C	G	1766	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.99;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1799,204,0
chrXIII	47907	.	A	G	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=85;Dels=0.00;FS=3.384;HaplotypeScore=6.6087;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.691;QD=18.59;ReadPosRankSum=1.691;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1613,180,0
chrXIII	48814	.	A	G	2050	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.30;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2083,231,0
chrXIII	48882	.	A	G	2009	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.80;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2042,222,0
chrXIII	49588	.	C	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1678,177,0
chrXIII	49717	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=19.80;SB=-3.301e+01	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1775,198,0
chrXIII	49729	.	C	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=21.54;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1907,204,0
chrXIII	49768	.	T	C	1443	filter	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1476,159,0
chrXIII	49898	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.80;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1496,159,0
chrXIII	50202	.	G	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=18.43;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1102,117,0
chrXIII	50250	.	T	A	1112	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=9.8223;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.23;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1145,123,0
chrXIII	50514	.	T	C	922	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.95;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:955,105,0
chrXIII	50532	.	C	T	1017	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.60;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1050,111,0
chrXIII	50831	.	C	T	1246	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.10;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1279,135,0
chrXIII	51084	.	T	C	2120	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=24.09;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2153,234,0
chrXIII	51141	.	A	T	2646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=110;Dels=0.00;FS=3.090;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.976;QD=24.05;ReadPosRankSum=1.701;SB=-1.458e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2679,285,0
chrXIII	51348	.	A	C	2172	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.6478;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.16;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2205,249,0
chrXIII	51358	.	G	T	1750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=4.723;HaplotypeScore=2.6884;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.798;QD=19.66;ReadPosRankSum=1.499;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1783,192,0
chrXIII	51362	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.357;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.924;QD=18.42;ReadPosRankSum=1.694;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1709,192,0
chrXIII	51409	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=16.47;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1318,147,0
chrXIII	51433	.	G	A	1231	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=15.58;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,75:79:99:1264,135,0
chrXIII	51596	.	A	G	2610	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.30;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2643,294,0
chrXIII	51658	.	A	G	2487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=0.481;QD=23.03;ReadPosRankSum=1.700;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2520,276,0
chrXIII	51951	.	T	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.6701;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.01;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1920,204,0
chrXIII	52482	.	G	A	1747	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.08;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1780,189,0
chrXIII	52494	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=17.31;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1539,171,0
chrXIII	52575	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.91;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1476,159,0
chrXIII	52632	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.72;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1813,198,0
chrXIII	52782	.	A	G	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.096;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=0.509;QD=20.63;ReadPosRankSum=1.698;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2137,237,0
chrXIII	52795	.	C	T	2189	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.72;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2222,234,0
chrXIII	53214	.	C	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.38;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1880,204,0
chrXIII	53276	.	C	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.61;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1744,189,0
chrXIII	53537	.	T	C	810	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.41;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:843,90,0
chrXIII	53556	.	A	G	741	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;MQRankSum=-1.591;QD=15.12;ReadPosRankSum=1.662;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:87:774,87,0
chrXIII	53642	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.3024;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=18.82;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1520,165,0
chrXIII	53825	.	C	A	305	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=7.09;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:36:338,36,0
chrXIII	53841	.	A	G	436	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=10.38;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:51:469,51,0
chrXIII	53934	.	T	C	999	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.84;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1032,114,0
chrXIII	53982	.	C	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.69;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1175,132,0
chrXIII	53991	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.28;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1130,120,0
chrXIII	54136	.	T	C	1719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=1.178;QD=22.62;ReadPosRankSum=1.594;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1752,189,0
chrXIII	54192	.	A	C	1867	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.49;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1900,207,0
chrXIII	54538	.	C	A	2514	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.85;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2547,261,0
chrXIII	54576	.	G	C	1913	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.26;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1946,210,0
chrXIII	54586	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.98;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1945,204,0
chrXIII	54663	.	C	T	897	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.61;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:99:930,99,0
chrXIII	54916	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=24.12;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1191,129,0
chrXIII	55092	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.82;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1388,156,0
chrXIII	55098	.	A	C	1319	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.58;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1352,153,0
chrXIII	55152	.	A	G	1233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.892;QD=18.68;ReadPosRankSum=1.627;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1266,138,0
chrXIII	55558	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.577;QD=21.55;ReadPosRankSum=1.686;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1671,183,0
chrXIII	55582	.	A	G	1897	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.31;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1930,210,0
chrXIII	55751	.	G	A	1737	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=23.79;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1770,180,0
chrXIII	55773	.	G	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.45;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1425,156,0
chrXIII	55803	.	G	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.18;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1042,108,0
chrXIII	56231	.	A	G	1162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=65;Dels=0.00;FS=3.010;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.058;QD=17.88;ReadPosRankSum=2.373;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:2,62:65:99:1195,132,0
chrXIII	56291	.	G	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=18.33;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1133,123,0
chrXIII	56362	.	G	A	1231	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.86;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1264,135,0
chrXIII	56369	.	T	C	1215	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.25;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1248,135,0
chrXIII	56748	.	T	A	1635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.2780;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-1.780;QD=21.80;ReadPosRankSum=2.380;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1668,177,0
chrXIII	57144	.	G	A	2416	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.46;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2449,258,0
chrXIII	57365	.	A	G	1269	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.770;QD=17.62;ReadPosRankSum=1.636;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1302,147,0
chrXIII	58688	.	T	G	1747	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.85;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1780,195,0
chrXIII	58718	.	T	A	2028	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=102;Dels=0.00;FS=6.146;HaplotypeScore=7.6153;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.535;QD=19.88;ReadPosRankSum=2.931;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:3,99:102:99:2061,225,0
chrXIII	58847	.	T	G	2159	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.3731;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.22;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2192,240,0
chrXIII	59135	.	C	T	1171	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.22;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1204,126,0
chrXIII	59485	.	A	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.75;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1419,159,0
chrXIII	59627	.	G	A	1673	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.65;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1706,186,0
chrXIII	59776	.	C	T	2164	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.54;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2197,237,0
chrXIII	60008	.	T	C	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=6.198;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.937;QD=21.34;ReadPosRankSum=2.384;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:2,73:76:99:1655,183,0
chrXIII	60420	.	G	C	1420	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.90;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1453,159,0
chrXIII	60431	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=25.23;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1597,165,0
chrXIII	60610	.	C	T	1950	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.67;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1983,213,0
chrXIII	60742	.	G	A	1773	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.36;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1806,195,0
chrXIII	60754	.	T	G	1656	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.48;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1689,186,0
chrXIII	60925	.	G	A	2006	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.29;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2039,219,0
chrXIII	61147	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=17.55;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1560,177,0
chrXIII	61164	.	A	C	1753	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.65;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,92:94:99:1786,192,0
chrXIII	61366	.	A	G	1693	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.582;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.593;QD=23.19;ReadPosRankSum=1.637;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1726,189,0
chrXIII	61391	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.20;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1476,156,0
chrXIII	61433	.	C	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.29;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1660,174,0
chrXIII	61486	.	C	T	1957	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.27;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1990,207,0
chrXIII	61663	.	T	C	1928	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.080;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.453;QD=22.16;ReadPosRankSum=1.692;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1961,222,0
chrXIII	61664	.	A	G	1949	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=22.40;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1982,222,0
chrXIII	61741	.	A	G	1617	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.77;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1650,183,0
chrXIII	61840	.	A	T	1369	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1402,150,0
chrXIII	62010	.	G	C	1346	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.09;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1379,150,0
chrXIII	62344	.	C	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.73;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1433,150,0
chrXIII	62513	.	A	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=20.64;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1354,147,0
chrXIII	62570	.	C	T	1749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.01;MQ0=0;MQRankSum=1.258;QD=18.41;ReadPosRankSum=1.659;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1782,186,0
chrXIII	62572	.	G	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=17.02;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1701,183,0
chrXIII	62594	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.86;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1801,195,0
chrXIII	62630	.	G	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=17.64;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1850,204,0
chrXIII	62996	.	C	T	2490	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=24.41;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2523,267,0
chrXIII	63305	.	T	A	2523	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.58;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2556,273,0
chrXIII	63358	.	C	A	2358	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.46;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2391,249,0
chrXIII	63473	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.41;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1826,201,0
chrXIII	63566	.	A	G	1981	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.07;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2014,222,0
chrXIII	63905	.	C	T	2162	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2195,240,0
chrXIII	63947	.	T	A	1641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=4.279;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.686;QD=21.59;ReadPosRankSum=1.594;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1674,174,0
chrXIII	64724	.	T	G	1501	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1534,165,0
chrXIII	64972	.	C	A	1806	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.45;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1839,189,0
chrXIII	66821	.	C	G	1706	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.55;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1739,192,0
chrXIII	67415	.	T	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.92;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1958,213,0
chrXIII	68826	.	T	C	1265	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.77;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1298,144,0
chrXIII	69109	.	C	G	1814	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=19.30;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1847,210,0
chrXIII	69113	.	A	G	1780	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.54;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1813,201,0
chrXIII	69500	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.34;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2006,216,0
chrXIII	70380	.	A	G	449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.261;QD=20.41;ReadPosRankSum=1.576;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:1,21:22:54:482,54,0
chrXIII	71137	.	A	G	1171	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.925;QD=15.82;ReadPosRankSum=1.685;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1204,132,0
chrXIII	71358	.	G	A	1137	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9779;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=15.58;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1170,120,0
chrXIII	71382	.	T	C	1049	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9631;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=14.57;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1082,120,0
chrXIII	71397	.	T	C	1067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.472;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=-1.237;QD=15.24;ReadPosRankSum=1.683;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1100,117,0
chrXIII	71867	.	A	T	850	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=17.35;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:883,93,0
chrXIII	72027	.	C	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.26;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1947,207,0
chrXIII	72351	.	C	A	1215	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.60;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1248,135,0
chrXIII	73368	.	G	A	1358	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.13;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1391,147,0
chrXIII	73993	.	C	T	3053	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.31;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,129:131:99:3086,324,0
chrXIII	74014	.	C	T	3189	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.80;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,133:134:99:3222,339,0
chrXIII	74346	.	C	T	2927	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.23;SB=-1.674e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2960,309,0
chrXIII	74436	.	C	T	2068	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.73;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2101,225,0
chrXIII	74632	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.16;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1646,180,0
chrXIII	74704	.	A	G	2542	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.73;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,115:117:99:2575,276,0
chrXIII	75040	.	T	C	2830	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=23.01;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2863,315,0
chrXIII	75046	.	C	A	2769	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=22.33;SB=-1.425e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2802,291,0
chrXIII	75133	.	G	A	2005	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2038,219,0
chrXIII	75251	.	G	C	2559	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.3790;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=19.99;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2592,282,0
chrXIII	75275	.	G	A	2359	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.45;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2392,267,0
chrXIII	75304	.	T	C	2058	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.44;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,93:96:99:2091,228,0
chrXIII	75396	.	T	C	1837	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.332;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.990;QD=21.87;ReadPosRankSum=1.691;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1870,201,0
chrXIII	75576	.	A	G	1656	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.70;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1689,183,0
chrXIII	75781	.	T	A	1663	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2215;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.53;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1696,180,0
chrXIII	76188	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=20.79;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1696,177,0
chrXIII	76194	.	A	C	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.617;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=-1.230;QD=19.41;ReadPosRankSum=1.682;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1372,153,0
chrXIII	76222	.	A	T	1289	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.41;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1322,138,0
chrXIII	76243	.	A	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=14.61;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1304,147,0
chrXIII	76357	.	G	A	1512	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.14;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1545,165,0
chrXIII	76517	.	A	G	2203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=3.747;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.270;QD=20.21;ReadPosRankSum=1.700;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2236,249,0
chrXIII	76522	.	A	G	2179	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=20.18;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2212,243,0
chrXIII	77019	.	C	G	1269	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.13;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1302,144,0
chrXIII	77482	.	C	T	1710	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.65;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1743,183,0
chrXIII	77676	.	C	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.80;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1297,141,0
chrXIII	77679	.	C	T	859	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=14.08;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,56:61:99:892,99,0
chrXIII	77739	.	G	C	1144	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.07;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1177,135,0
chrXIII	77796	.	C	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.82;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1324,141,0
chrXIII	77879	.	T	G	1841	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=21.41;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1874,198,0
chrXIII	77934	.	C	T	2136	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=12.0766;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=16.56;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,126:129:99:2169,237,0
chrXIII	77979	.	T	G	2223	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.58;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2256,246,0
chrXIII	77997	.	C	T	2423	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.02;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=23.52;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2456,258,0
chrXIII	78097	.	A	G	614	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.19;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:72:647,72,0
chrXIII	78101	.	T	C	543	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.72;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:63:576,63,0
chrXIII	78103	.	A	G	563	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=19.41;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:66:596,66,0
chrXIII	78125	.	C	T	468	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.33;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:51:501,51,0
chrXIII	78446	.	T	A	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=0.836;QD=22.19;ReadPosRankSum=1.673;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1320,138,0
chrXIII	78538	.	C	T	1619	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.16;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1652,171,0
chrXIII	78658	.	T	C	1512	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=3.070;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.441;QD=21.60;ReadPosRankSum=2.380;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1545,165,0
chrXIII	78710	.	A	C	1737	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.56;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1770,195,0
chrXIII	78749	.	T	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.79;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1917,207,0
chrXIII	78777	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.35;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1442,159,0
chrXIII	78836	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.193;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.119;QD=19.39;ReadPosRankSum=1.685;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1468,162,0
chrXIII	78839	.	G	A	1469	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.08;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1502,168,0
chrXIII	78923	.	C	T	1475	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.38;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1508,165,0
chrXIII	79258	.	G	A	1556	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=21.92;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1589,168,0
chrXIII	79575	.	C	T	1496	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.22;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1529,162,0
chrXIII	79713	.	T	C	1565	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.36;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1598,177,0
chrXIII	79761	.	T	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.02;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1378,147,0
chrXIII	79783	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=16.32;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:898,102,0
chrXIII	79850	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.03;FS=0.000;HaplotypeScore=93.1781;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=16.51;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1634,180,0
chrXIII	79948	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.36;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1580,174,0
chrXIII	79953	.	G	C	1479	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=18.96;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1512,165,0
chrXIII	79968	.	C	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9628;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.90;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1486,156,0
chrXIII	80145	.	G	A	1720	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=24.57;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1753,186,0
chrXIII	80254	.	T	G	2148	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.10;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2181,234,0
chrXIII	80310	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.99;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1792,192,0
chrXIII	80397	.	G	A	571	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4706;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=13.93;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:604,66,0
chrXIII	80403	.	T	C	714	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.7922;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=15.87;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:747,81,0
chrXIII	80679	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.16;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1505,168,0
chrXIII	80887	.	G	A	2560	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=16.1489;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.16;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2593,282,0
chrXIII	81063	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=20.78;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1155,126,0
chrXIII	81111	.	C	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.00;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1441,156,0
chrXIII	81228	.	G	A	2722	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.1792;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=19.17;SB=-1.475e+03	GT:AD:DP:GQ:PL	1/1:0,141:142:99:2755,303,0
chrXIII	81243	.	C	T	3429.01	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.98;SB=-1.923e+03	GT:AD:DP:GQ:PL	1/1:0,156:156:99:3429,366,0
chrXIII	81755	.	C	T	2225	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.4317;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.92;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2258,237,0
chrXIII	81991	.	G	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.0935;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=16.19;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1134,120,0
chrXIII	82027	.	A	G	1057	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.62;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1090,123,0
chrXIII	82357	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.50;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1454,159,0
chrXIII	82881	.	T	A	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.051;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.732;QD=23.05;ReadPosRankSum=1.675;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1439,153,0
chrXIII	83128	.	T	C	2009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.739;DP=89;Dels=0.00;FS=2.574;HaplotypeScore=8.1987;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-2.398;QD=22.57;ReadPosRankSum=2.762;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:3,86:89:99:2042,225,0
chrXIII	83176	.	T	C	1376	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.14;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1409,156,0
chrXIII	83404	.	G	A	2738	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=24.45;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2771,291,0
chrXIII	83905	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1571,171,0
chrXIII	83964	.	G	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.49;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1570,165,0
chrXIII	84176	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=83;Dels=0.00;FS=3.644;HaplotypeScore=8.1651;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=0.150;QD=16.57;ReadPosRankSum=1.647;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,80:83:99:1408,156,0
chrXIII	84178	.	G	A	1440	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.3429;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.56;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1473,159,0
chrXIII	84233	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.871;DP=101;Dels=0.00;FS=6.046;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;MQRankSum=0.470;QD=19.05;ReadPosRankSum=2.931;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:3,98:101:99:1957,213,0
chrXIII	84550	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=21.08;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1340,147,0
chrXIII	84712	.	C	T	1714	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.26;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1747,192,0
chrXIII	84896	.	A	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=51;Dels=0.00;FS=4.114;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.601;QD=23.08;ReadPosRankSum=1.662;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:1,48:51:99:1210,132,0
chrXIII	85213	.	G	A	1874	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.31;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1907,201,0
chrXIII	85247	.	T	C	1842	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0823;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.46;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1875,204,0
chrXIII	85307	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.70;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1486,165,0
chrXIII	85411	.	T	A	1294	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.9356;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.54;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1327,141,0
chrXIII	87019	.	T	C	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=6.93;SB=-2.376e+01	GT:AD:DP:GQ:PL	1/1:0,3:3:6:52,6,0
chrXIII	87318	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.54;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1070,117,0
chrXIII	88106	.	T	C	1242	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.36;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1275,141,0
chrXIII	88125	.	A	G	1141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.615;QD=18.40;ReadPosRankSum=1.565;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1174,129,0
chrXIII	88188	.	G	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.65;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1726,186,0
chrXIII	88266	.	T	C	1976	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.487;QD=19.96;ReadPosRankSum=0.997;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2009,219,0
chrXIII	88377	.	T	C	2087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.976;QD=23.99;ReadPosRankSum=1.692;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2120,228,0
chrXIII	88443	.	T	C	1690	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.86;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1723,195,0
chrXIII	88542	.	T	C	1878	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1911,207,0
chrXIII	88808	.	A	T	1669	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.86;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1702,180,0
chrXIII	89001	.	C	T	917	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.7463;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.51;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:950,99,0
chrXIII	89059	.	T	G	1097	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.94;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1130,123,0
chrXIII	89321	.	T	C	1861	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.68;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1894,207,0
chrXIII	89325	.	A	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.92;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1958,216,0
chrXIII	89355	.	T	A	1574	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=21.27;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1607,174,0
chrXIII	89556	.	T	C	1391	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.16;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1424,159,0
chrXIII	89571	.	T	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=20.21;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1569,171,0
chrXIII	89649	.	T	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.33;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1783,189,0
chrXIII	89691	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.94;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1437,159,0
chrXIII	89806	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.06;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1647,180,0
chrXIII	89860	.	C	T	1620	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.82;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1653,171,0
chrXIII	89876	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=21.94;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1547,165,0
chrXIII	90773	.	A	G	1513	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.65;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1546,168,0
chrXIII	90833	.	G	C	1225	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.08;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1258,141,0
chrXIII	90865	.	A	G	560	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.5558;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=14.36;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,36:39:66:593,66,0
chrXIII	91086	.	A	G	1456	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.48;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1489,165,0
chrXIII	91149	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.26;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1289,135,0
chrXIII	91448	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.44;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1198,135,0
chrXIII	91485	.	G	A	993	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.47;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1026,108,0
chrXIII	91532	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=18.12;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1102,123,0
chrXIII	91587	.	G	A	1530	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.8959;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.87;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1563,165,0
chrXIII	91667	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=8.239;HaplotypeScore=6.0277;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=-1.258;QD=18.82;ReadPosRankSum=2.362;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1087,120,0
chrXIII	91733	.	G	C	599	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=32.8613;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=13.02;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:69:632,69,0
chrXIII	91863	.	G	C	723	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.08;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,33:36:84:756,84,0
chrXIII	91890	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=20.31;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:886,99,0
chrXIII	91960	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=21.79;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1188,126,0
chrXIII	91974	.	C	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9332;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.71;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1172,123,0
chrXIII	92531	.	G	A	1424	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.73;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1457,156,0
chrXIII	93032	.	G	T	2037	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.5170;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.37;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,95:100:99:2070,219,0
chrXIII	93860	.	G	A	1755	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.79;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1788,195,0
chrXIII	93961	.	A	G	2293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=112;Dels=0.00;FS=2.600;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=0.721;QD=20.47;ReadPosRankSum=1.892;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:3,109:112:99:2326,258,0
chrXIII	93980	.	T	C	2150	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=21.29;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2183,246,0
chrXIII	94055	.	T	C	1908	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=23.27;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1941,207,0
chrXIII	94190	.	T	C	1162	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=17.09;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1195,135,0
chrXIII	94338	.	T	A	297	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=41.77;MQ0=0;QD=5.12;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:36:330,36,0
chrXIII	94394	.	T	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.34;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1970,213,0
chrXIII	94572	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.540;QD=21.66;ReadPosRankSum=1.675;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1354,147,0
chrXIII	94695	.	C	T	1771	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.00;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1804,195,0
chrXIII	94812	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1217,129,0
chrXIII	94898	.	G	C	1072	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.81;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1105,120,0
chrXIII	95277	.	A	C	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.994;QD=21.11;ReadPosRankSum=1.675;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1321,147,0
chrXIII	95343	.	A	C	1589	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.128;DP=87;Dels=0.00;FS=2.565;HaplotypeScore=15.2458;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.081;QD=18.26;ReadPosRankSum=2.384;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:3,84:87:99:1622,180,0
chrXIII	95482	.	A	C	930	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=8.1877;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.79;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:963,105,0
chrXIII	95529	.	C	T	438	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=18.25;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:51:471,51,0
chrXIII	95780	.	A	G	808	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:90:841,90,0
chrXIII	95911	.	G	A	978	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1011,108,0
chrXIII	96019	.	C	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=20.78;SB=-1.190e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1072,111,0
chrXIII	96022	.	G	A	930	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.22;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:963,108,0
chrXIII	96832	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.2211;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.50;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1108,126,0
chrXIII	96883	.	A	G	1182	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.89;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1215,135,0
chrXIII	97548	.	T	C	1897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=13.3071;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.988;QD=19.56;ReadPosRankSum=2.296;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:2,94:97:99:1930,210,0
chrXIII	97600	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=15.30;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1089,117,0
chrXIII	97628	.	G	A	830	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=13.83;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:90:863,90,0
chrXIII	97656	.	T	G	1059	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=16.81;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1092,120,0
chrXIII	97705	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.31;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1759,186,0
chrXIII	97775	.	G	A	2480	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.8568;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.84;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,115:119:99:2513,264,0
chrXIII	97791	.	T	C	2740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=137;Dels=0.00;FS=3.443;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.341;QD=20.00;ReadPosRankSum=1.707;SB=-1.452e+03	GT:AD:DP:GQ:PL	1/1:1,136:137:99:2773,306,0
chrXIII	98070	.	G	A	3053	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.12;SB=-1.661e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3086,324,0
chrXIII	98310	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.40;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1321,147,0
chrXIII	98939	.	A	G	1653	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.22;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1686,189,0
chrXIII	99579	.	G	A	1773	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.73;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1806,195,0
chrXIII	99586	.	T	C	1436	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.81;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1469,162,0
chrXIII	99676	.	G	A	2986	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6043;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=22.97;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:0,128:130:99:3019,310,0
chrXIII	99717	.	G	A	3492.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.13;SB=-1.721e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:3492,361,0
chrXIII	99880	.	C	T	2298	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.8793;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.16;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2331,258,0
chrXIII	100054	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=3.051;HaplotypeScore=6.5977;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.154;QD=21.25;ReadPosRankSum=2.394;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1903,210,0
chrXIII	100124	.	G	A	1780	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.46;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1813,192,0
chrXIII	100532	.	T	C	1810	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.825;QD=21.55;ReadPosRankSum=1.691;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1843,204,0
chrXIII	100551	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.64;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1613,171,0
chrXIII	100694	.	T	C	1840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.669;QD=20.67;ReadPosRankSum=1.653;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1873,207,0
chrXIII	100803	.	G	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.64;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1462,159,0
chrXIII	100813	.	T	C	1519	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=17.26;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1552,171,0
chrXIII	101267	.	C	T	2501	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.2543;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.89;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2534,270,0
chrXIII	101298	.	G	A	1620	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.18;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1653,186,0
chrXIII	101353	.	C	T	952	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.67;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:985,102,0
chrXIII	101365	.	C	T	947	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=17.54;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:980,105,0
chrXIII	101469	.	A	T	1449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.133;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=1.679;QD=22.29;ReadPosRankSum=1.572;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1482,159,0
chrXIII	101681	.	T	C	1549	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.86;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1582,177,0
chrXIII	101716	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=18.78;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1291,141,0
chrXIII	101856	.	T	C	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=66;Dels=0.00;FS=2.994;HaplotypeScore=9.9509;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.159;QD=18.58;ReadPosRankSum=2.336;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:1259,138,0
chrXIII	102104	.	C	G	1846	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.7340;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.24;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1879,213,0
chrXIII	102269	.	A	G	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=5.694;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.931;QD=21.60;ReadPosRankSum=2.879;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:3,55:58:99:1286,144,0
chrXIII	102554	.	C	T	2010	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2043,219,0
chrXIII	102605	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.34;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1335,147,0
chrXIII	102686	.	G	A	1002	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.56;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1035,111,0
chrXIII	103133	.	T	C	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.064;QD=20.09;ReadPosRankSum=1.672;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1198,132,0
chrXIII	103222	.	G	A	833	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.32;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:90:866,90,0
chrXIII	103318	.	A	G	915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.901;QD=17.94;ReadPosRankSum=1.663;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:99:948,105,0
chrXIII	103361	.	A	G	930	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.24;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,48:51:99:963,105,0
chrXIII	104510	.	T	G	1051	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=17.23;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1084,123,0
chrXIII	104516	.	A	G	923	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=15.91;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:956,108,0
chrXIII	105255	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.434;QD=22.47;ReadPosRankSum=1.673;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1336,147,0
chrXIII	105326	.	G	A	977	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.71;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:99:1010,108,0
chrXIII	105355	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.34;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1005,114,0
chrXIII	105406	.	G	A	949	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=14.16;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:982,105,0
chrXIII	105409	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=12.79;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1005,111,0
chrXIII	105707	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.30;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1717,192,0
chrXIII	106249	.	A	G	1747	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.26;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1780,195,0
chrXIII	106723	.	G	A	1945	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.37;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1978,213,0
chrXIII	107083	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.1879;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.34;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1832,201,0
chrXIII	107242	.	C	T	1747	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.59;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1780,192,0
chrXIII	107248	.	C	T	2059	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.45;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2092,222,0
chrXIII	107332	.	T	C	2171	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.34;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2204,240,0
chrXIII	107365	.	T	C	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.154;QD=22.08;ReadPosRankSum=2.381;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1623,180,0
chrXIII	107666	.	T	G	2267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-0.233;QD=21.59;ReadPosRankSum=1.699;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:1,103:105:99:2300,258,0
chrXIII	107914	.	C	T	1867	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.98;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1900,201,0
chrXIII	107957	.	C	T	2011	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.66;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:2044,219,0
chrXIII	108599	.	A	G	4480.01	PASS	AC=2;AF=1.00;AN=2;DP=211;Dels=0.00;FS=0.000;HaplotypeScore=21.2130;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.23;SB=-2.369e+03	GT:AD:DP:GQ:PL	1/1:0,211:211:99:4480,498,0
chrXIII	108668	.	T	C	2040	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.2595;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.55;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2073,231,0
chrXIII	108789	.	A	G	2339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.8242;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.279;QD=21.86;ReadPosRankSum=1.635;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2372,261,0
chrXIII	108901	.	C	T	2214	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=12.9162;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.95;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2247,240,0
chrXIII	109270	.	T	C	1682	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.43;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1715,189,0
chrXIII	109435	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.011;DP=75;Dels=0.00;FS=3.050;HaplotypeScore=11.4347;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.321;QD=20.44;ReadPosRankSum=2.281;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:2,71:75:99:1566,171,0
chrXIII	109584	.	G	A	1771	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.0445;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.00;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1804,186,0
chrXIII	109647	.	A	G	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=5.514;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=-0.409;QD=22.70;ReadPosRankSum=1.693;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2053,228,0
chrXIII	109765	.	T	C	1804	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.102;QD=23.43;ReadPosRankSum=1.687;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1837,198,0
chrXIII	109858	.	C	T	2709	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.49;SB=-1.672e+03	GT:AD:DP:GQ:PL	1/1:0,138:139:99:2742,288,0
chrXIII	109860	.	C	A	2730	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.96;SB=-1.707e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:2763,288,0
chrXIII	110039	.	T	C	1897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.960;HaplotypeScore=5.3747;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=0.921;QD=20.18;ReadPosRankSum=1.695;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1930,210,0
chrXIII	110068	.	G	A	2628	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.51;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2661,285,0
chrXIII	110077	.	A	G	2328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.490;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.2046;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=0.206;QD=16.06;ReadPosRankSum=1.708;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:1,142:145:99:2361,264,0
chrXIII	110109	.	C	T	3555.01	PASS	AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=9.7643;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.64;SB=-2.345e+03	GT:AD:DP:GQ:PL	1/1:0,181:181:99:3555,373,0
chrXIII	110245	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.59;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1708,180,0
chrXIII	110807	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.92;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1414,153,0
chrXIII	111909	.	T	C	2939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.346;QD=25.56;ReadPosRankSum=1.672;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2972,321,0
chrXIII	112670	.	T	C	2128	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.658;QD=22.88;ReadPosRankSum=1.695;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2161,234,0
chrXIII	112781	.	G	A	2630	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.48;SB=-1.493e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2663,276,0
chrXIII	113072	.	G	A	2572	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.17;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2605,273,0
chrXIII	113091	.	G	A	2178	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7141;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.35;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2211,231,0
chrXIII	113575	.	T	C	2390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.2193;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.635;QD=23.20;ReadPosRankSum=1.664;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,101:103:99:2423,264,0
chrXIII	113641	.	C	T	1853	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.33;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1886,204,0
chrXIII	114304	.	T	C	2269	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=19.73;SB=-1.512e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2302,252,0
chrXIII	114310	.	T	C	2075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.332;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.897;QD=18.53;ReadPosRankSum=1.701;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2108,234,0
chrXIII	114535	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.46;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1376,141,0
chrXIII	114545	.	A	G	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;MQRankSum=-0.087;QD=17.28;ReadPosRankSum=1.516;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1433,159,0
chrXIII	114553	.	C	T	1734	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1136;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.27;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1767,186,0
chrXIII	114648	.	C	T	1537	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.9055;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=17.27;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1570,168,0
chrXIII	114707	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.52;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1487,165,0
chrXIII	114963	.	G	A	1060	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.78;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1093,114,0
chrXIII	115183	.	A	G	1170	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.89;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1203,132,0
chrXIII	115471	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.37;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1486,156,0
chrXIII	115564	.	G	A	1863	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.17;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1896,198,0
chrXIII	115959	.	C	T	2230	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.6669;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.24;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2263,240,0
chrXIII	116112	.	A	G	1973	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.55;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2006,228,0
chrXIII	116448	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=14.89;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1165,126,0
chrXIII	117294	.	T	C	1553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.903;QD=21.87;ReadPosRankSum=1.683;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1586,177,0
chrXIII	117342	.	C	T	1479	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3937;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.99;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1512,162,0
chrXIII	117651	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.96;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1592,177,0
chrXIII	117732	.	T	C	1735	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.53;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1768,192,0
chrXIII	118473	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.27;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1736,195,0
chrXIII	118891	.	G	A	1718	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.169;QD=21.21;ReadPosRankSum=0.260;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1751,186,0
chrXIII	119016	.	A	G	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=3.140;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.255;QD=21.57;ReadPosRankSum=1.681;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1500,165,0
chrXIII	119087	.	A	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.60;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1389,156,0
chrXIII	119306	.	A	G	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.590;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.217;QD=23.31;ReadPosRankSum=1.624;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1525,168,0
chrXIII	119408	.	T	G	1252	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.721;QD=20.87;ReadPosRankSum=0.721;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1285,141,0
chrXIII	119467	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.917;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=0.828;QD=18.07;ReadPosRankSum=1.632;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1298,144,0
chrXIII	119476	.	G	A	1098	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=18.00;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1131,120,0
chrXIII	119630	.	C	T	1972	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.98;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2005,210,0
chrXIII	120084	.	G	A	2011	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.38;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2044,219,0
chrXIII	120376	.	C	T	861	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.25;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:894,102,0
chrXIII	120947	.	A	G	1284	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=16.46;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1317,141,0
chrXIII	120995	.	G	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=17.34;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1594,171,0
chrXIII	121180	.	G	A	947	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:980,102,0
chrXIII	121603	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.54;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1498,162,0
chrXIII	121847	.	G	A	1293	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.55;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1326,150,0
chrXIII	121935	.	C	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=19.88;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1504,159,0
chrXIII	121948	.	G	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=20.96;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1563,168,0
chrXIII	121951	.	T	C	1426	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=19.81;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1459,159,0
chrXIII	121965	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.415;QD=17.97;ReadPosRankSum=0.610;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1309,144,0
chrXIII	122094	.	G	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.02;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1707,180,0
chrXIII	122176	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.78;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1529,168,0
chrXIII	122193	.	A	G	1272	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=66;Dels=0.00;FS=6.359;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.355;QD=19.27;ReadPosRankSum=2.301;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1305,144,0
chrXIII	122298	.	G	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=18.33;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1316,141,0
chrXIII	122317	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.76;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1436,150,0
chrXIII	122362	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=18.49;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1272,135,0
chrXIII	122510	.	A	G	1475	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=19.41;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1508,165,0
chrXIII	122837	.	G	A	1444	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=16.04;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1477,159,0
chrXIII	123828	.	G	A	2052	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.47;MQ0=0;QD=16.16;SB=-1.521e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2085,228,0
chrXIII	123833	.	G	A	2064	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=15.76;SB=-1.538e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2097,216,0
chrXIII	123850	.	C	T	1482	SnpCluster	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=12.56;SB=-1.399e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:1515,159,0
chrXIII	123851	.	G	T	1419	SnpCluster	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.92;MQ0=0;QD=12.03;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:1452,156,0
chrXIII	123855	.	G	A	1396	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=127;Dels=0.00;FS=3.809;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;MQRankSum=-1.178;QD=10.99;ReadPosRankSum=0.956;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:1,125:127:99:1429,150,0
chrXIII	124000	.	T	A	2069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.389;DP=129;Dels=0.00;FS=13.400;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-1.609;QD=16.04;ReadPosRankSum=3.280;SB=-1.476e+03	GT:AD:DP:GQ:PL	1/1:4,125:129:99:2102,231,0
chrXIII	124027	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=0;QD=16.12;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1597,171,0
chrXIII	124036	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=75.2408;MLEAC=2;MLEAF=1.00;MQ=39.37;MQ0=0;QD=14.86;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1445,159,0
chrXIII	124045	.	G	T	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=87.4970;MLEAC=2;MLEAF=1.00;MQ=40.11;MQ0=0;QD=0.20;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:6:52,6,0
chrXIII	124113	.	T	C	2421	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.32;MQ0=0;QD=20.17;SB=-1.452e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2454,273,0
chrXIII	124135	.	G	A	2929	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;QD=22.71;SB=-1.511e+03	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2962,312,0
chrXIII	124216	.	C	A	3711.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=9.9594;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=22.91;SB=-2.090e+03	GT:AD:DP:GQ:PL	1/1:0,160:162:99:3711,388,0
chrXIII	124283	.	C	G	2456	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=20.64;SB=-1.400e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2489,282,0
chrXIII	124309	.	A	G	2300	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.0849;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.70;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2333,258,0
chrXIII	124356	.	C	T	844	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=49;Dels=0.00;FS=3.075;HaplotypeScore=5.7670;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=-0.085;QD=17.22;ReadPosRankSum=1.944;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:2,46:49:96:877,96,0
chrXIII	124357	.	A	G	839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.250;DP=47;Dels=0.00;FS=8.591;HaplotypeScore=4.9783;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=0.738;QD=17.85;ReadPosRankSum=3.250;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:4,41:47:96:872,96,0
chrXIII	124406	.	C	G	505	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=8.15;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:60:538,60,0
chrXIII	124408	.	C	G	521	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.55;MQ0=0;QD=8.40;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:63:554,63,0
chrXIII	124455	.	T	C	1087	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=45.83;MQ0=0;QD=11.82;SB=-1.480e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1120,123,0
chrXIII	124497	.	A	G	1540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.12;MQ0=0;MQRankSum=0.259;QD=17.50;ReadPosRankSum=1.692;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1573,152,0
chrXIII	124499	.	C	T	1666	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.03;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=18.31;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1699,177,0
chrXIII	124576	.	G	A	2365	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.87;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,117:119:99:2398,249,0
chrXIII	124675	.	T	C	1455	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=24.66;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1488,162,0
chrXIII	124697	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.23;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1535,168,0
chrXIII	124777	.	C	T	948	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=22.05;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:981,108,0
chrXIII	124802	.	C	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.78;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1172,123,0
chrXIII	124844	.	G	A	1130	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=24.04;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1163,120,0
chrXIII	124877	.	G	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.90;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1201,129,0
chrXIII	125006	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.74;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1401,156,0
chrXIII	125244	.	A	G	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.449;QD=20.96;ReadPosRankSum=1.668;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1165,129,0
chrXIII	125640	.	T	C	1121	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-1.291;QD=20.38;ReadPosRankSum=1.669;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1154,126,0
chrXIII	125874	.	T	C	1756	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=21.41;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1789,195,0
chrXIII	125883	.	A	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.82;MQ0=0;QD=19.99;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1612,174,0
chrXIII	125888	.	G	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=19.23;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1533,165,0
chrXIII	125916	.	C	T	1250	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.812;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.758;QD=19.53;ReadPosRankSum=0.595;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1283,138,0
chrXIII	126625	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.2580;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.59;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1680,177,0
chrXIII	126663	.	C	T	2121	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5343;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.81;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2154,222,0
chrXIII	127093	.	T	C	1560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.565;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.624;QD=20.80;ReadPosRankSum=1.640;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1593,177,0
chrXIII	127250	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=3.610;HaplotypeScore=8.4075;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=1.397;QD=21.73;ReadPosRankSum=1.676;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,61:64:99:1424,156,0
chrXIII	127320	.	C	G	1925	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.37;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1958,213,0
chrXIII	127429	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.152;QD=21.26;ReadPosRankSum=2.364;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1245,135,0
chrXIII	127550	.	T	C	1607	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=12.7395;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.14;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1640,177,0
chrXIII	127589	.	A	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1674,174,0
chrXIII	128432	.	A	G	1320	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=17.14;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1353,150,0
chrXIII	128498	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.72;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1238,132,0
chrXIII	128860	.	A	G	1510	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.88;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1543,168,0
chrXIII	128877	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.80;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1439,156,0
chrXIII	129009	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.01;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1762,183,0
chrXIII	129083	.	G	A	1749	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.01;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1782,189,0
chrXIII	129337	.	G	C	2107	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.41;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2140,237,0
chrXIII	129400	.	T	G	2068	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2101,231,0
chrXIII	129456	.	T	C	2510	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.82;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2543,273,0
chrXIII	129599	.	C	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=22.55;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1950,207,0
chrXIII	129926	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.98;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1130,123,0
chrXIII	130073	.	T	C	2009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.866;QD=21.84;ReadPosRankSum=1.694;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2042,222,0
chrXIII	130218	.	T	C	1553	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.43;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1586,171,0
chrXIII	130251	.	G	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.1525;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.18;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,69:73:99:1506,165,0
chrXIII	130360	.	C	A	2091	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.18;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2124,222,0
chrXIII	130721	.	A	G	3378.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=148;Dels=0.00;FS=3.348;HaplotypeScore=8.2494;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.813;QD=22.82;ReadPosRankSum=1.709;SB=-1.805e+03	GT:AD:DP:GQ:PL	1/1:1,146:148:99:3378,372,0
chrXIII	131093	.	C	G	2027	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7236;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=21.34;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2060,225,0
chrXIII	131106	.	T	C	1983	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.44;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2016,222,0
chrXIII	131349	.	G	T	2360	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=23.60;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2393,252,0
chrXIII	131365	.	T	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=20.55;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1800,186,0
chrXIII	131423	.	A	G	1929	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.68;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1962,219,0
chrXIII	131647	.	G	C	3458.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.60;SB=-1.374e+03	GT:AD:DP:GQ:PL	1/1:0,147:153:99:3458,372,0
chrXIII	131930	.	A	T	2667	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.79;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2700,276,0
chrXIII	132028	.	A	T	1703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.548;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.0879;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;MQRankSum=0.221;QD=18.12;ReadPosRankSum=1.695;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1736,183,0
chrXIII	132039	.	G	A	1698	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=19.08;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1731,180,0
chrXIII	132061	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=15.59;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1592,174,0
chrXIII	132065	.	G	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=15.67;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1616,168,0
chrXIII	132088	.	T	C	1540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.665;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=0.312;QD=15.40;ReadPosRankSum=1.697;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1573,171,0
chrXIII	132350	.	G	A	1998	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=24.07;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2031,213,0
chrXIII	132409	.	A	G	2785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;MQRankSum=-0.900;QD=21.59;ReadPosRankSum=1.678;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2818,318,0
chrXIII	132552	.	C	T	2293	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.1265;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.60;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2326,240,0
chrXIII	132728	.	C	T	547	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=0;QD=11.64;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:60:580,60,0
chrXIII	132734	.	T	A	655	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=11.70;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:75:688,75,0
chrXIII	132736	.	C	G	681	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.95;MQ0=0;QD=11.74;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:78:714,78,0
chrXIII	132741	.	T	C	673	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=5.315;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;MQRankSum=-1.732;QD=9.90;ReadPosRankSum=1.172;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:78:706,78,0
chrXIII	132751	.	C	A	824	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=11.44;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:90:857,90,0
chrXIII	132818	.	C	T	1910	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=17.52;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1943,210,0
chrXIII	132842	.	C	G	2147	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=22.13;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2180,237,0
chrXIII	132856	.	C	T	2099	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=22.09;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2132,225,0
chrXIII	132910	.	C	T	1290	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.25;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1323,141,0
chrXIII	133001	.	A	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=21.14;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1365,150,0
chrXIII	133099	.	T	C	2036	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=23.40;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2069,228,0
chrXIII	133212	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.86;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1185,129,0
chrXIII	133405	.	T	C	1884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.395;DP=90;Dels=0.00;FS=8.033;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=1.875;QD=20.93;ReadPosRankSum=2.340;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1917,207,0
chrXIII	133436	.	A	G	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.432;QD=20.04;ReadPosRankSum=1.666;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:1,103:105:99:2137,231,0
chrXIII	133555	.	G	T	1015	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.07;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1048,111,0
chrXIII	133610	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.645;QD=22.29;ReadPosRankSum=1.597;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1170,129,0
chrXIII	133858	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.370;QD=17.99;ReadPosRankSum=1.681;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1238,144,0
chrXIII	134620	.	C	T	1755	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.8233;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.22;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1788,192,0
chrXIII	135169	.	A	G	522	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.08;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:60:555,60,0
chrXIII	135233	.	C	A	822	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.57;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:855,90,0
chrXIII	135252	.	T	C	714	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.85;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:81:747,81,0
chrXIII	135343	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.60;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1331,144,0
chrXIII	135387	.	G	A	934	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.87;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:967,102,0
chrXIII	135401	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=18.75;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1008,111,0
chrXIII	135470	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=11.4736;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=21.30;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1375,144,0
chrXIII	136477	.	A	G	3653.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.83;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,160:160:99:3653,402,0
chrXIII	136675	.	A	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.70;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1834,198,0
chrXIII	136702	.	T	G	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.760;QD=19.79;ReadPosRankSum=1.690;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1656,186,0
chrXIII	136948	.	A	G	3581.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=151;Dels=0.00;FS=7.379;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.058;QD=23.72;ReadPosRankSum=2.417;SB=-1.606e+03	GT:AD:DP:GQ:PL	1/1:2,147:151:99:3581,396,0
chrXIII	137116	.	T	C	2510	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.02;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2543,282,0
chrXIII	137286	.	C	T	3690.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.96;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,167:168:99:3690,393,0
chrXIII	137451	.	G	A	2417	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=24.66;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2450,252,0
chrXIII	137475	.	C	T	2450	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=25.26;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2483,261,0
chrXIII	137716	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.28;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1709,177,0
chrXIII	137717	.	C	T	1646	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=16.63;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1679,180,0
chrXIII	137768	.	C	A	1816	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8719;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=15.13;SB=-1.292e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:1849,198,0
chrXIII	137796	.	C	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=17.12;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1814,195,0
chrXIII	137804	.	T	C	1938	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=17.78;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1971,219,0
chrXIII	137879	.	C	T	1922	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.84;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1955,207,0
chrXIII	137883	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.12;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1844,204,0
chrXIII	138042	.	A	G	2007	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=23.61;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2040,222,0
chrXIII	138914	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.09;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1513,165,0
chrXIII	139013	.	A	G	3013	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.99;SB=-1.675e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3046,330,0
chrXIII	139632	.	C	T	1218	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4254;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.03;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1251,135,0
chrXIII	139664	.	T	C	1119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=3.832;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.673;QD=18.97;ReadPosRankSum=1.673;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1152,123,0
chrXIII	140328	.	G	A	2376	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.07;SB=-1.371e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2409,249,0
chrXIII	140486	.	T	G	1323	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.34;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1356,150,0
chrXIII	140757	.	C	T	3022	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.77;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3055,330,0
chrXIII	140935	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.37;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1118,126,0
chrXIII	140970	.	A	G	1242	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.54;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1275,138,0
chrXIII	142186	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.860;DP=79;Dels=0.00;FS=5.933;HaplotypeScore=1.9559;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-1.013;QD=15.95;ReadPosRankSum=2.655;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1293,144,0
chrXIII	142190	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9429;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=-0.684;QD=17.32;ReadPosRankSum=1.687;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1367,153,0
chrXIII	142236	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.86;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1127,120,0
chrXIII	142365	.	T	C	1548	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.43;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1581,177,0
chrXIII	142395	.	C	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.51;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1517,162,0
chrXIII	142824	.	G	A	1246	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1279,135,0
chrXIII	142984	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=5.7219;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.32;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1504,165,0
chrXIII	143064	.	A	C	877	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.93;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:910,102,0
chrXIII	143613	.	G	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.79;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1674,177,0
chrXIII	144507	.	C	T	2958	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.25;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2991,324,0
chrXIII	145063	.	T	C	2303	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.80;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2336,249,0
chrXIII	145301	.	G	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.12;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1582,165,0
chrXIII	145373	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.11;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1743,192,0
chrXIII	145974	.	A	G	2173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=1.670;QD=19.58;ReadPosRankSum=1.638;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2206,243,0
chrXIII	146064	.	T	A	3547.01	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.2660;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=25.16;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3547,375,0
chrXIII	146198	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=23.87;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1274,135,0
chrXIII	146240	.	A	G	878	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=5.0048;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.90;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:911,99,0
chrXIII	146979	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.61;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1299,141,0
chrXIII	147350	.	T	C	907	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.718;QD=22.12;ReadPosRankSum=1.648;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:1,40:41:99:940,105,0
chrXIII	147399	.	G	A	1440	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.15;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1473,153,0
chrXIII	147966	.	T	C	1677	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3608;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.45;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1710,189,0
chrXIII	148627	.	T	C	1262	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.42;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1295,141,0
chrXIII	148716	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.14;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1557,168,0
chrXIII	148721	.	C	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=17.21;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1513,159,0
chrXIII	149089	.	T	C	1871	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.01;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1904,207,0
chrXIII	149567	.	A	G	895	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=15.17;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:928,105,0
chrXIII	149583	.	A	G	786	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=14.29;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:819,90,0
chrXIII	149796	.	C	T	793	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=17.24;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:826,90,0
chrXIII	149883	.	G	A	965	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.23;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:998,105,0
chrXIII	150027	.	C	T	921	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.42;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:954,102,0
chrXIII	150108	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.09;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:99:1027,108,0
chrXIII	150264	.	C	T	1132	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.42;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1165,123,0
chrXIII	150273	.	G	A	1072	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=16.24;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1105,123,0
chrXIII	150312	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.57;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1618,168,0
chrXIII	150402	.	G	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=24.40;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1058,114,0
chrXIII	150480	.	A	T	1035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=-1.374;QD=17.84;ReadPosRankSum=1.673;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1068,114,0
chrXIII	150534	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.57;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1501,165,0
chrXIII	151234	.	T	C	1597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;DP=78;Dels=0.00;FS=6.113;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.182;QD=20.47;ReadPosRankSum=2.884;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1630,177,0
chrXIII	151715	.	A	G	2099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.342;DP=91;Dels=0.00;FS=7.424;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.286;QD=23.07;ReadPosRankSum=2.396;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:2132,231,0
chrXIII	154578	.	A	G	1877	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.83;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1910,204,0
chrXIII	155649	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.20;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1485,156,0
chrXIII	156513	.	A	C	1332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.306;QD=20.49;ReadPosRankSum=1.679;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1365,153,0
chrXIII	158538	.	T	C	609	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.77;MQ0=0;QD=21.75;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:69:642,69,0
chrXIII	159094	.	T	G	1038	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.96;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1071,120,0
chrXIII	159532	.	C	T	640	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.82;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,32:34:75:673,75,0
chrXIII	159727	.	T	C	415	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=14.31;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,28:29:48:448,48,0
chrXIII	159728	.	T	C	419	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=14.45;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,29:29:48:452,48,0
chrXIII	159757	.	T	G	422	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=13.19;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:51:455,51,0
chrXIII	159950	.	A	T	964	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=25.37;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:99:997,108,0
chrXIII	160000	.	C	T	595	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.87;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:66:628,66,0
chrXIII	160037	.	C	A	690	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.26;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,28:31:81:723,81,0
chrXIII	160146	.	C	T	600	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.3631;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.22;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:69:633,69,0
chrXIII	160611	.	T	C	1051	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.90;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1084,120,0
chrXIII	161385	.	C	T	2310	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=18.63;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2343,249,0
chrXIII	161572	.	T	C	806	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.79;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:839,93,0
chrXIII	161620	.	A	G	665	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=17.50;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:698,78,0
chrXIII	161664	.	T	C	900	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=16.67;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,51:54:99:933,102,0
chrXIII	162309	.	G	A	2328	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=22.38;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,101:104:99:2361,255,0
chrXIII	162461	.	A	G	1141	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.11;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1174,129,0
chrXIII	162681	.	C	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.19;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1760,183,0
chrXIII	162716	.	A	G	812	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=12.12;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:93:845,93,0
chrXIII	162731	.	T	C	576	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=10.47;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:66:609,66,0
chrXIII	162755	.	A	G	212.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;MQRankSum=-1.348;QD=5.89;ReadPosRankSum=1.636;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:27:245,27,0
chrXIII	162758	.	G	A	134.13	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=4.06;SB=-3.131e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:18:167,18,0
chrXIII	162770	.	C	G	72.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.37;MQ0=0;QD=4.27;SB=-1.585e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:12:105,12,0
chrXIII	162775	.	A	T	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=3.77;SB=-1.388e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:9:81,9,0
chrXIII	162776	.	A	T	50.97	SnpCluster	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.28;MQ0=0;QD=3.92;SB=-1.438e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:9:83,9,0
chrXIII	162833	.	T	C	50.97	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.51;MQ0=2;QD=7.28;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:2,5:7:9:83,9,0
chrXIII	162840	.	G	A	168.06	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.85;MQ0=2;QD=12.00;SB=-2.907e+01	GT:AD:DP:GQ:PL	1/1:2,12:14:21:201,21,0
chrXIII	162854	.	A	G	283	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=2;QD=12.30;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:2,21:23:36:316,36,0
chrXIII	162859	.	T	C	337	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=30;Dels=0.00;FS=6.532;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=2;MQRankSum=1.091;QD=11.23;ReadPosRankSum=1.605;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:3,27:30:39:370,39,0
chrXIII	162865	.	A	G	415	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=2;QD=12.97;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:2,30:32:51:448,51,0
chrXIII	162867	.	T	C	448	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.08;MQ0=2;QD=14.00;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:2,30:32:51:481,51,0
chrXIII	162876	.	G	C	446	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=12.39;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:2,34:36:51:479,51,0
chrXIII	162878	.	T	C	449	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.18;MQ0=2;QD=12.47;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:2,34:36:51:482,51,0
chrXIII	162884	.	A	G	504	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.96;MQ0=0;QD=11.20;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:60:537,60,0
chrXIII	162886	.	T	C	555	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=11.56;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:63:588,63,0
chrXIII	162890	.	T	C	595	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;QD=10.44;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:69:628,69,0
chrXIII	162895	.	T	G	615	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.68;MQ0=0;QD=9.92;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:72:648,72,0
chrXIII	162907	.	G	C	940	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.86;MQ0=0;QD=11.33;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:973,108,0
chrXIII	163055	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.69;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1341,144,0
chrXIII	163283	.	T	C	1024	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=23.27;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1057,114,0
chrXIII	163376	.	A	C	1812	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.07;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1845,204,0
chrXIII	163496	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.70;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1479,165,0
chrXIII	163519	.	G	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.41;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1571,168,0
chrXIII	164021	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.64;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1286,135,0
chrXIII	164304	.	G	A	1112	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.66;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1145,120,0
chrXIII	164532	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.60;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1166,129,0
chrXIII	165032	.	G	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.55;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1564,162,0
chrXIII	165218	.	A	G	594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.327;QD=19.16;ReadPosRankSum=2.292;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:2,29:31:69:627,69,0
chrXIII	165482	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1169,132,0
chrXIII	166349	.	T	C	1848	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4083;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=22.54;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1881,204,0
chrXIII	166364	.	A	G	1458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.311;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;MQRankSum=-0.421;QD=19.70;ReadPosRankSum=-0.609;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1491,142,0
chrXIII	166589	.	A	C	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.633;QD=18.89;ReadPosRankSum=1.683;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1355,150,0
chrXIII	166619	.	G	A	1491	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.36;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1524,162,0
chrXIII	166876	.	G	A	1046	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.74;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1079,114,0
chrXIII	167027	.	A	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.51;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1477,159,0
chrXIII	167521	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=22.53;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1272,132,0
chrXIII	167925	.	A	G	1434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=85;Dels=0.00;FS=6.389;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=-1.261;QD=16.87;ReadPosRankSum=2.392;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1467,162,0
chrXIII	167929	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=17.73;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1487,156,0
chrXIII	167959	.	T	C	825	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.89;MQ0=0;QD=14.22;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:93:858,93,0
chrXIII	167962	.	C	T	822	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=50.5496;MLEAC=2;MLEAF=1.00;MQ=43.45;MQ0=0;QD=14.17;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:93:855,93,0
chrXIII	168084	.	C	T	1448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;MQRankSum=0.834;QD=17.88;ReadPosRankSum=1.604;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1481,159,0
chrXIII	168139	.	C	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=18.86;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1108,117,0
chrXIII	168229	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=81;Dels=0.00;FS=9.222;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=1.402;QD=20.33;ReadPosRankSum=2.357;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1680,183,0
chrXIII	168709	.	T	C	268	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.600;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;MQRankSum=-2.188;QD=5.83;ReadPosRankSum=3.600;SB=-1.087e-02	GT:AD:DP:GQ:PL	1/1:5,41:46:33:301,33,0
chrXIII	168722	.	C	A	503	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=9.49;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:60:536,60,0
chrXIII	168744	.	T	C	670	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.69;MQ0=0;QD=12.18;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:78:703,78,0
chrXIII	168750	.	A	G	690	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=11.31;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:81:723,81,0
chrXIII	168773	.	T	C	808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;MQRankSum=-1.299;QD=14.18;ReadPosRankSum=1.670;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:93:841,93,0
chrXIII	168774	.	T	G	831	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=36.99;MQ0=0;QD=14.58;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:96:864,96,0
chrXIII	168838	.	C	T	835	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.03;MQ0=0;QD=21.97;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:868,90,0
chrXIII	169412	.	T	G	3538.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.737;DP=172;Dels=0.00;FS=26.152;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.365;QD=20.57;ReadPosRankSum=3.801;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:5,167:172:99:3538,387,0
chrXIII	169495	.	T	C	1098	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=8.58;SB=-1.415e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:1131,143,0
chrXIII	169765	.	A	G	1232	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.67;SB=-1.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1265,141,0
chrXIII	169803	.	C	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=67.0852;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=17.60;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1459,156,0
chrXIII	169862	.	A	G	1918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;MQRankSum=0.232;QD=19.57;ReadPosRankSum=1.696;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:1,96:98:99:1951,213,0
chrXIII	170184	.	T	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.18;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1113,117,0
chrXIII	170932	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=13.11;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:767,84,0
chrXIII	171523	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.40;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1790,198,0
chrXIII	171785	.	T	C	1770	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.24;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1803,192,0
chrXIII	171896	.	A	C	1813	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.37;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1846,207,0
chrXIII	172439	.	C	T	1150	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.54;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1183,129,0
chrXIII	172478	.	C	T	1282	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1315,141,0
chrXIII	172523	.	C	A	1214	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.80;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1247,129,0
chrXIII	172685	.	T	C	1887	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.20;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1920,213,0
chrXIII	172925	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.65;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1271,132,0
chrXIII	172973	.	G	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.43;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1710,186,0
chrXIII	173017	.	A	G	2742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=118;Dels=0.00;FS=7.091;HaplotypeScore=7.4280;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.515;QD=23.24;ReadPosRankSum=2.408;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:2,115:118:99:2775,300,0
chrXIII	173124	.	G	A	1843	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1876,201,0
chrXIII	173282	.	T	C	1515	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.68;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1548,168,0
chrXIII	173537	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.18;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1526,168,0
chrXIII	173678	.	C	T	1455	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.38;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1488,156,0
chrXIII	173888	.	T	C	1644	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.52;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1677,183,0
chrXIII	174577	.	A	G	2286	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.5726;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=19.37;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2319,261,0
chrXIII	174661	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.33;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1192,129,0
chrXIII	174980	.	T	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.15;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1726,180,0
chrXIII	174982	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.95;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1669,180,0
chrXIII	175074	.	G	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.94;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1436,159,0
chrXIII	175225	.	G	A	2724	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.89;SB=-1.494e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2757,297,0
chrXIII	175469	.	C	T	2884	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=23.45;SB=-1.579e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2917,306,0
chrXIII	175507	.	G	A	3836.01	PASS	AC=2;AF=1.00;AN=2;DP=177;Dels=0.00;FS=0.000;HaplotypeScore=7.2647;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=21.67;SB=-1.905e+03	GT:AD:DP:GQ:PL	1/1:0,176:177:99:3836,420,0
chrXIII	175545	.	T	C	3941.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=9.5149;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=23.05;SB=-1.750e+03	GT:AD:DP:GQ:PL	1/1:0,171:171:99:3941,432,0
chrXIII	175777	.	A	G	2250	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.43;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2283,246,0
chrXIII	175815	.	T	C	2916	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=20.11;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:2949,333,0
chrXIII	175871	.	C	T	2426	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=10.2720;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=15.16;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,156:160:99:2459,258,0
chrXIII	175874	.	C	A	2187	PASS	AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=9.4833;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=12.43;SB=-1.307e+03	GT:AD:DP:GQ:PL	1/1:0,172:176:99:2220,240,0
chrXIII	175883	.	A	T	2442	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=190;Dels=0.00;FS=2.925;HaplotypeScore=7.5353;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;MQRankSum=-2.088;QD=12.85;ReadPosRankSum=2.359;SB=-2.146e+03	GT:AD:DP:GQ:PL	1/1:2,188:190:99:2475,261,0
chrXIII	176006	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1835,192,0
chrXIII	176077	.	T	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.1046;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.42;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2006,216,0
chrXIII	176141	.	C	T	3485.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.93;SB=-1.965e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3485,369,0
chrXIII	176730	.	T	C	2161	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=6.128;HaplotypeScore=6.1255;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.380;QD=17.57;ReadPosRankSum=1.704;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2194,237,0
chrXIII	176890	.	C	T	1522	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.06;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1555,168,0
chrXIII	176942	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.75;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1396,153,0
chrXIII	177237	.	T	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.92;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1958,216,0
chrXIII	177595	.	C	T	1861	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.15;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1894,201,0
chrXIII	177778	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=20.85;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1513,156,0
chrXIII	177801	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=17.94;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1486,156,0
chrXIII	177805	.	A	T	1300	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=16.46;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1333,144,0
chrXIII	178128	.	A	G	1782	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=19.58;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1815,198,0
chrXIII	178203	.	A	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.46;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1726,192,0
chrXIII	178920	.	A	G	1916	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.54;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1949,213,0
chrXIII	178941	.	A	G	1591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.123;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=1.022;QD=20.14;ReadPosRankSum=1.688;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1624,183,0
chrXIII	179112	.	T	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.50;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1293,138,0
chrXIII	179205	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.2835;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.20;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1232,129,0
chrXIII	179677	.	T	A	602	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=15.05;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:69:635,69,0
chrXIII	179713	.	G	C	173.06	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.61;MQ0=0;QD=3.09;SB=-1.381e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:21:206,21,0
chrXIII	179752	.	G	A	620	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=11.48;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,54:54:66:653,66,0
chrXIII	180257	.	G	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.97;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1543,168,0
chrXIII	181992	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=23.09;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1557,162,0
chrXIII	182688	.	A	G	1110	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.82;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1143,129,0
chrXIII	182691	.	A	T	1116	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.29;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1149,126,0
chrXIII	182695	.	A	T	1244	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=21.08;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1277,132,0
chrXIII	183006	.	T	C	1813	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.406;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;MQRankSum=-1.284;QD=21.33;ReadPosRankSum=1.691;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1846,204,0
chrXIII	183093	.	C	T	1659	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=24.40;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1692,174,0
chrXIII	183195	.	C	A	842	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.58;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:875,93,0
chrXIII	183371	.	C	T	1080	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=19.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:55:99:1113,123,0
chrXIII	183700	.	T	A	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:55,6,0
chrXIII	183712	.	C	T	80.51	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=3.35;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,24:24:12:113,12,0
chrXIII	183752	.	G	A	234.01	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=6.16;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:0,38:38:27:267,27,0
chrXIII	183799	.	T	C	466	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=10.84;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:54:499,54,0
chrXIII	183800	.	A	T	479	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.17;MQ0=0;QD=11.14;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:54:512,54,0
chrXIII	183815	.	T	C	421	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.50;MQ0=0;MQRankSum=0.743;QD=10.02;ReadPosRankSum=1.650;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:1,41:42:48:454,48,0
chrXIII	183816	.	A	C	418	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.78;MQ0=0;QD=10.20;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:48:451,48,0
chrXIII	183824	.	G	T	457	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=35.98;MQ0=0;QD=10.16;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,45:45:51:490,51,0
chrXIII	183882	.	G	A	1053	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=42.1295;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;QD=22.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1086,120,0
chrXIII	183972	.	C	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=34.96;MQ0=0;QD=22.78;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1901,216,0
chrXIII	184099	.	G	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=22.73;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1783,186,0
chrXIII	190082	.	C	T	40.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.898;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=3.3286;MLEAC=2;MLEAF=1.00;MQ=27.23;MQ0=9;MQRankSum=1.733;QD=2.16;ReadPosRankSum=-1.271;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:10,8:19:9:73,9,0
chrXIII	190128	.	G	C	3305.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=4.2339;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=1.055;QD=18.89;ReadPosRankSum=-1.334;SB=-1.523e+03	GT:AD:DP:GQ:PL	1/1:1,173:175:99:3305,357,0
chrXIII	190481	.	C	T	1756	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.6999;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=17.39;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1789,186,0
chrXIII	190550	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=3.837;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.208;QD=21.41;ReadPosRankSum=1.686;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1660,183,0
chrXIII	191033	.	A	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.74;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1415,159,0
chrXIII	191291	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=19.42;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1373,150,0
chrXIII	191314	.	T	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7435;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=17.86;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1176,129,0
chrXIII	191318	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.3342;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=18.67;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1265,135,0
chrXIII	191452	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.468;QD=19.81;ReadPosRankSum=1.685;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1519,168,0
chrXIII	191569	.	T	C	2098	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.63;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2131,237,0
chrXIII	191792	.	A	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=20.73;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1422,159,0
chrXIII	191837	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.9668;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;MQRankSum=-1.124;QD=16.76;ReadPosRankSum=1.685;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1290,138,0
chrXIII	191860	.	G	A	795	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=16.56;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:87:828,87,0
chrXIII	191863	.	C	T	702	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=14.62;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:81:735,81,0
chrXIII	191932	.	A	T	1248	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.96;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1281,135,0
chrXIII	191956	.	G	C	973	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.63;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1006,108,0
chrXIII	191998	.	T	A	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;DP=22;Dels=0.00;FS=23.650;HaplotypeScore=13.0614;MLEAC=1;MLEAF=0.500;MQ=50.95;MQ0=0;MQRankSum=3.031;QD=0.52;ReadPosRankSum=-2.044;SB=-1.100e+01	GT:AD:DP:GQ:PL	0/1:15,7:22:41:41,0,129
chrXIII	192044	.	C	A	638	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=21.27;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:78:671,78,0
chrXIII	192110	.	T	C	721	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=24.86;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:81:754,81,0
chrXIII	192147	.	C	T	585	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=14.27;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:66:618,66,0
chrXIII	192321	.	T	C	749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=41;Dels=0.00;FS=3.575;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.549;QD=18.27;ReadPosRankSum=0.211;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:90:782,90,0
chrXIII	192372	.	T	C	856	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=19.45;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:889,96,0
chrXIII	192396	.	C	T	851	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=21.27;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:93:884,93,0
chrXIII	192432	.	T	C	464	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=16.00;SB=-1.460e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:54:497,54,0
chrXIII	192436	.	T	C	434	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=16.07;SB=-1.370e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:51:467,51,0
chrXIII	192743	.	G	A	93.26	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=7.17;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,13:13:15:126,15,0
chrXIII	193083	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1541,165,0
chrXIII	193159	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.64;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1483,159,0
chrXIII	193330	.	T	C	1727	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.56;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1760,192,0
chrXIII	193709	.	C	A	1407	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=15.81;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1440,156,0
chrXIII	193723	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.19;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1494,156,0
chrXIII	193971	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=7.361;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.203;QD=21.09;ReadPosRankSum=2.303;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1446,159,0
chrXIII	194335	.	C	T	1117	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.60;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1150,123,0
chrXIII	194436	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.25;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1246,138,0
chrXIII	194614	.	T	C	1969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.716;QD=23.44;ReadPosRankSum=1.364;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:2002,216,0
chrXIII	195045	.	C	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.91;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1601,171,0
chrXIII	195227	.	A	G	2231	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.7732;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.45;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2264,249,0
chrXIII	195282	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.40;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1706,186,0
chrXIII	195330	.	C	A	1457	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.96;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1490,159,0
chrXIII	195360	.	T	C	1528	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=19.84;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1561,171,0
chrXIII	195417	.	T	C	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.216;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=1.412;QD=18.95;ReadPosRankSum=1.679;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1265,138,0
chrXIII	195423	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=19.35;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1252,135,0
chrXIII	195744	.	T	C	1239	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.36;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1272,141,0
chrXIII	195860	.	A	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.46;MQ0=0;QD=17.44;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1707,186,0
chrXIII	195862	.	G	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=18.04;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1801,198,0
chrXIII	195938	.	A	G	1681	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=20.50;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1714,180,0
chrXIII	195968	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=12.5646;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.52;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1410,150,0
chrXIII	195989	.	G	A	870	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=20.23;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:96:903,96,0
chrXIII	196113	.	T	C	293	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=15.42;SB=-8.426e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:36:326,36,0
chrXIII	196123	.	A	G	466	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.87;MQ0=0;QD=17.26;SB=-6.553e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:54:499,54,0
chrXIII	196201	.	A	G	24.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=6.19;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:6:56,6,0
chrXIII	196246	.	C	T	1027	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=27.76;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1060,111,0
chrXIII	202185	.	G	A	19.09	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=7.35;MQ0=53;MQRankSum=1.666;QD=0.31;ReadPosRankSum=-1.666;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:58,4:62:19:49,0,19
chrXIII	202186	.	T	C	16.14	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DP=96;Dels=0.00;FS=14.393;HaplotypeScore=5.9101;MLEAC=1;MLEAF=0.500;MQ=18.71;MQ0=51;MQRankSum=0.578;QD=0.17;ReadPosRankSum=1.570;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,2:96:19:46,0,19
chrXIII	202206	.	T	C	64.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;DP=79;Dels=0.00;FS=44.184;HaplotypeScore=17.8309;MLEAC=1;MLEAF=0.500;MQ=23.83;MQ0=20;MQRankSum=1.560;QD=0.81;ReadPosRankSum=3.538;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:34,43:79:65:94,0,65
chrXIII	202207	.	T	A	165.06	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.096;DP=78;Dels=0.00;FS=18.606;HaplotypeScore=23.0234;MLEAC=2;MLEAF=1.00;MQ=24.92;MQ0=18;MQRankSum=1.896;QD=2.12;ReadPosRankSum=3.417;SB=-1.331e+02	GT:AD:DP:GQ:PL	1/1:32,46:78:21:198,21,0
chrXIII	202222	.	A	C	201.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.776;DP=66;Dels=0.00;FS=53.960;HaplotypeScore=9.9032;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=1;MQRankSum=2.376;QD=3.05;ReadPosRankSum=5.334;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:13,53:66:24:234,24,0
chrXIII	202482	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=21.01;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1693,186,0
chrXIII	202531	.	T	C	2597	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=21.82;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2630,282,0
chrXIII	203104	.	C	T	2233	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.47;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2266,249,0
chrXIII	207757	.	A	G	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=58;Dels=0.00;FS=6.577;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.369;QD=22.72;ReadPosRankSum=2.364;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:2,55:58:99:1351,147,0
chrXIII	209014	.	G	A	589	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.85;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:66:622,66,0
chrXIII	209233	.	C	T	850	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:93:883,93,0
chrXIII	211521	.	T	C	3221.02	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.413;DP=137;Dels=0.00;FS=2.702;HaplotypeScore=13.2251;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=0.138;QD=23.51;ReadPosRankSum=1.569;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:2,132:137:99:3254,360,0
chrXIII	212859	.	T	C	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.551;QD=21.18;ReadPosRankSum=1.653;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1897,207,0
chrXIII	213972	.	G	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.11;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1859,192,0
chrXIII	214086	.	C	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=12.33;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:1439,153,0
chrXIII	214378	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.17;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1505,165,0
chrXIII	215334	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.95;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:78:99:1589,177,0
chrXIII	215544	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7766;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.80;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1537,165,0
chrXIII	215595	.	T	C	2380	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.67;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2413,261,0
chrXIII	216027	.	C	T	1833	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.29;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1866,201,0
chrXIII	216572	.	T	C	1434	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.13;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1467,156,0
chrXIII	217030	.	T	G	2918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=137;Dels=0.00;FS=4.465;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.569;QD=21.30;ReadPosRankSum=1.606;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:1,136:137:99:2951,318,0
chrXIII	217750	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.74;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1757,183,0
chrXIII	217967	.	G	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.27;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1748,186,0
chrXIII	218882	.	T	C	1188	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.86;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1221,135,0
chrXIII	219326	.	G	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.5708;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=22.29;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1883,204,0
chrXIII	220725	.	A	G	2191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=5.822;HaplotypeScore=6.6428;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.279;QD=20.48;ReadPosRankSum=-0.113;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2224,243,0
chrXIII	220830	.	C	T	4900.01	PASS	AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=9.7084;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.67;SB=-1.956e+03	GT:AD:DP:GQ:PL	1/1:0,206:207:99:4900,520,0
chrXIII	220900	.	G	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.86;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1953,219,0
chrXIII	233610	.	C	T	1024	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=18.29;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1057,111,0
chrXIII	233612	.	G	A	932	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=16.35;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:965,108,0
chrXIII	233936	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.86;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1602,174,0
chrXIII	234091	.	C	A	3405.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.1415;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.48;SB=-1.876e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3405,360,0
chrXIII	234329	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.11;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1581,171,0
chrXIII	234471	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.82;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1480,165,0
chrXIII	234518	.	C	G	1343	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=20.98;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1376,147,0
chrXIII	234542	.	T	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.90;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1566,165,0
chrXIII	234606	.	G	C	961	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.61;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:99:994,108,0
chrXIII	234636	.	A	T	648	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.64;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:72:681,72,0
chrXIII	234644	.	A	G	650	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.31;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:75:683,75,0
chrXIII	234778	.	T	C	755	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=18.41;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:90:788,90,0
chrXIII	235099	.	G	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=19.18;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1203,135,0
chrXIII	235740	.	A	G	2432	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9879;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.52;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2465,270,0
chrXIII	235798	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5272;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.05;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1923,201,0
chrXIII	236124	.	G	C	1727	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.14;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1760,195,0
chrXIII	236185	.	A	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.59;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1307,135,0
chrXIII	236370	.	C	T	2525	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.60;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2558,273,0
chrXIII	236833	.	C	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.71;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1649,174,0
chrXIII	236851	.	G	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.27;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1522,159,0
chrXIII	237159	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=4.260;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.000;QD=18.35;ReadPosRankSum=1.646;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:87:767,87,0
chrXIII	237882	.	C	T	907	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.14;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:940,105,0
chrXIII	237965	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.91;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1420,153,0
chrXIII	245622	.	G	A	1109	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=16.80;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1142,120,0
chrXIII	245624	.	C	T	1116	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=16.91;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1149,123,0
chrXIII	245628	.	A	G	1073	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=15.11;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1106,123,0
chrXIII	246258	.	C	T	1857	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.11;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1890,201,0
chrXIII	246679	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0109;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.01;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1326,147,0
chrXIII	246803	.	T	C	2296	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=3.432;HaplotypeScore=7.9639;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-1.668;QD=21.06;ReadPosRankSum=1.636;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2329,258,0
chrXIII	246910	.	A	T	1894	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.60;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1927,201,0
chrXIII	247126	.	T	C	1720	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.33;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1753,195,0
chrXIII	247484	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.46;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1181,126,0
chrXIII	247728	.	T	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=22.90;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1613,177,0
chrXIII	250211	.	A	G	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.660;QD=23.10;ReadPosRankSum=1.196;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1973,216,0
chrXIII	250529	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=17.97;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1345,147,0
chrXIII	250706	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.07;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1559,168,0
chrXIII	251274	.	A	C	2228	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=21.02;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2261,246,0
chrXIII	252532	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.6989;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.75;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1554,162,0
chrXIII	253274	.	G	A	1965	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.90;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1998,219,0
chrXIII	253290	.	G	C	2037	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=20.17;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2070,225,0
chrXIII	253309	.	T	C	2066	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.78;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2099,231,0
chrXIII	253448	.	A	C	816	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.74;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:849,93,0
chrXIII	254132	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=22.18;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1364,141,0
chrXIII	254138	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.67;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1209,132,0
chrXIII	254318	.	C	T	1963	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.54;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1996,216,0
chrXIII	254427	.	A	G	1167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.062;DP=61;Dels=0.00;FS=7.361;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.132;QD=19.13;ReadPosRankSum=1.009;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:2,58:61:99:1200,111,0
chrXIII	255569	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.83;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1741,189,0
chrXIII	256001	.	T	C	1698	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.49;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1731,186,0
chrXIII	257811	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.78;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1449,159,0
chrXIII	259099	.	C	T	3217.04	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.8069;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.50;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3250,342,0
chrXIII	259663	.	T	C	2388	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.91;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2421,264,0
chrXIII	259756	.	C	T	1498	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.83;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1531,162,0
chrXIII	260334	.	T	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.19;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1958,213,0
chrXIII	260437	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.08;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1238,138,0
chrXIII	260462	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.597;QD=20.14;ReadPosRankSum=1.493;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1221,135,0
chrXIII	260580	.	T	C	3532.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=6.6880;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.55;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:1,149:150:99:3532,390,0
chrXIII	260820	.	G	A	2051	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.51;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2084,219,0
chrXIII	261191	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.400;QD=20.97;ReadPosRankSum=1.685;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1564,171,0
chrXIII	261864	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0480;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.42;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1274,141,0
chrXIII	262219	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.05;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1212,126,0
chrXIII	262578	.	G	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9391;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.42;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1719,186,0
chrXIII	262645	.	T	C	1003	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=19.29;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1036,114,0
chrXIII	262749	.	T	C	709	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.2691;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=17.29;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:84:742,84,0
chrXIII	262790	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.11;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1258,135,0
chrXIII	262820	.	G	C	1442	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6731;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.85;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1475,165,0
chrXIII	262898	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.433;QD=21.79;ReadPosRankSum=1.689;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1798,192,0
chrXIII	262958	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9499;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.48;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1604,174,0
chrXIII	263216	.	A	G	1238	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.94;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1271,138,0
chrXIII	263244	.	C	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.60;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1328,138,0
chrXIII	264340	.	A	T	653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=77;Dels=0.00;FS=2.417;HaplotypeScore=66.3658;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;MQRankSum=0.303;QD=8.48;ReadPosRankSum=2.514;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:90:686,90,0
chrXIII	264341	.	A	T	1136	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=64.4790;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=15.56;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1169,141,0
chrXIII	264868	.	G	A	2649	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;QD=23.44;SB=-1.434e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2682,285,0
chrXIII	265251	.	T	C	2335	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.35;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2368,261,0
chrXIII	265416	.	G	A	2082	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.26;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2115,231,0
chrXIII	265689	.	T	C	2406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=120;Dels=0.00;FS=3.237;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.851;QD=20.05;ReadPosRankSum=1.644;SB=-1.477e+03	GT:AD:DP:GQ:PL	1/1:1,117:120:99:2439,261,0
chrXIII	266166	.	G	A	2004	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.02;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2037,219,0
chrXIII	266327	.	C	A	1367	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.78;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1400,144,0
chrXIII	267926	.	T	A	330	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.71;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:39:363,39,0
chrXIII	267945	.	T	C	266	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=13.30;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,19:20:33:299,33,0
chrXIII	268094	.	T	A	270	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=12.27;SB=-1.450e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:33:303,33,0
chrXIII	268102	.	T	G	307	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=14.62;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:36:340,36,0
chrXIII	268108	.	G	A	301	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=13.68;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:36:334,36,0
chrXIII	268153	.	A	G	591	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=17.38;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:69:624,69,0
chrXIII	268427	.	C	A	706	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=24.34;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:78:739,78,0
chrXIII	268589	.	C	A	1024	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=26.26;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1057,111,0
chrXIII	268655	.	G	A	967	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1000,105,0
chrXIII	268760	.	A	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.20;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1167,129,0
chrXIII	269778	.	C	T	1582	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1615,171,0
chrXIII	270183	.	T	G	2345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=107;Dels=0.00;FS=5.950;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-0.538;QD=21.92;ReadPosRankSum=2.840;SB=-1.203e+03	GT:AD:DP:GQ:PL	1/1:3,104:107:99:2378,261,0
chrXIII	271672	.	A	C	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=3.048;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.107;QD=20.72;ReadPosRankSum=2.389;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:2,79:82:99:1732,189,0
chrXIII	273227	.	C	A	1688	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.21;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1721,183,0
chrXIII	273267	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.31;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1617,177,0
chrXIII	273598	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.88;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1394,147,0
chrXIII	274088	.	C	T	2122	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.82;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2155,231,0
chrXIII	274730	.	A	G	2291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.042;HaplotypeScore=7.4313;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.099;QD=22.03;ReadPosRankSum=1.666;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2324,264,0
chrXIII	274871	.	T	A	2190	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.47;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2223,234,0
chrXIII	275537	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.02;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1398,150,0
chrXIII	275767	.	C	T	2877	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.15;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:99:2910,315,0
chrXIII	275773	.	T	C	2564	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=19.57;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2597,285,0
chrXIII	275910	.	C	G	3470.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.0932;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.29;SB=-1.804e+03	GT:AD:DP:GQ:PL	1/1:0,148:149:99:3470,390,0
chrXIII	277164	.	A	G	1789	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.09;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1822,201,0
chrXIII	277293	.	T	G	2437	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.38;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2470,276,0
chrXIII	278550	.	C	G	2293	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.11;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2326,258,0
chrXIII	278881	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=18.44;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1176,132,0
chrXIII	279058	.	C	A	2096	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.17;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2129,219,0
chrXIII	279616	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.89;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1968,210,0
chrXIII	279667	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.43;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1393,153,0
chrXIII	280213	.	T	C	2029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=3.184;HaplotypeScore=7.1933;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.087;QD=19.89;ReadPosRankSum=1.664;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2062,222,0
chrXIII	280386	.	A	G	2064	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.96;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2097,228,0
chrXIII	281241	.	A	G	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;DP=82;Dels=0.00;FS=6.515;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-0.466;QD=21.04;ReadPosRankSum=2.390;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1758,189,0
chrXIII	281820	.	T	C	948	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.89;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:981,108,0
chrXIII	281871	.	A	C	1108	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.79;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1141,123,0
chrXIII	282022	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.26;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1431,156,0
chrXIII	282174	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1192,129,0
chrXIII	282723	.	A	G	2102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=2.908;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.565;QD=21.45;ReadPosRankSum=2.400;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:2,96:98:99:2135,231,0
chrXIII	282738	.	G	A	2130	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=20.29;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2163,231,0
chrXIII	283144	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.35;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1549,168,0
chrXIII	283368	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.75;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1251,135,0
chrXIII	283596	.	C	G	611	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.09;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:72:644,72,0
chrXIII	283853	.	G	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.93;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1305,141,0
chrXIII	284491	.	C	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.22;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1226,129,0
chrXIII	284507	.	T	C	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.440;QD=18.63;ReadPosRankSum=1.615;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1132,123,0
chrXIII	285133	.	A	G	2563	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.88;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2596,282,0
chrXIII	285222	.	T	C	1685	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4772;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.06;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1718,186,0
chrXIII	285345	.	A	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.59;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1701,183,0
chrXIII	285414	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.47;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1493,171,0
chrXIII	285468	.	G	A	1238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=9.4522;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.681;QD=18.48;ReadPosRankSum=0.336;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1271,135,0
chrXIII	285831	.	T	C	643	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.17;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:75:676,75,0
chrXIII	285841	.	C	T	660	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=21.29;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:72:693,72,0
chrXIII	285936	.	G	A	1026	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.02;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1059,111,0
chrXIII	286020	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.83;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1203,126,0
chrXIII	286104	.	C	T	2517	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.33;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2550,273,0
chrXIII	286123	.	T	C	2309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.5283;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.216;QD=19.74;ReadPosRankSum=2.940;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:3,114:117:99:2342,258,0
chrXIII	286312	.	C	G	2200	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.57;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,99:102:99:2233,240,0
chrXIII	286779	.	G	A	2969	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=11.8703;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.53;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,151:152:99:3002,324,0
chrXIII	287411	.	G	A	769	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.62;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:84:802,84,0
chrXIII	287879	.	A	C	681	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.28;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:714,78,0
chrXIII	287910	.	C	T	716	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=29.1691;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=18.84;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:78:749,78,0
chrXIII	287924	.	C	T	668	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=13.92;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:78:701,78,0
chrXIII	288024	.	T	C	2881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;DP=124;Dels=0.00;FS=6.114;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=0.602;QD=23.23;ReadPosRankSum=2.943;SB=-1.628e+03	GT:AD:DP:GQ:PL	1/1:3,121:124:99:2914,315,0
chrXIII	288031	.	T	C	2734	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.05;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2767,303,0
chrXIII	288433	.	T	A	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=75;Dels=0.00;FS=3.949;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.059;QD=19.56;ReadPosRankSum=1.684;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1500,159,0
chrXIII	288558	.	A	G	1036	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.1112;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.92;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1069,117,0
chrXIII	289183	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1364,147,0
chrXIII	289227	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.50;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1359,150,0
chrXIII	289416	.	C	T	1982	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.32;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2015,210,0
chrXIII	289866	.	C	T	2341	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=24.39;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2374,252,0
chrXIII	289963	.	A	G	2856	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=21.97;SB=-1.666e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:2889,318,0
chrXIII	290135	.	C	G	2807	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.1539;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=19.63;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2840,306,0
chrXIII	290137	.	C	T	2775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.498;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=0.378;QD=20.56;ReadPosRankSum=1.706;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:1,132:135:99:2808,274,0
chrXIII	290194	.	T	C	2352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.603;DP=134;Dels=0.00;FS=3.789;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=0.905;QD=17.55;ReadPosRankSum=-1.241;SB=-1.441e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:2385,261,0
chrXIII	290366	.	T	C	4131.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.194;DP=205;Dels=0.00;FS=6.669;HaplotypeScore=22.7408;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.696;QD=20.15;ReadPosRankSum=2.425;SB=-2.277e+03	GT:AD:DP:GQ:PL	1/1:2,200:205:99:4131,453,0
chrXIII	290445	.	A	G	3911.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=169;Dels=0.00;FS=6.859;HaplotypeScore=6.7070;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.080;QD=23.14;ReadPosRankSum=2.391;SB=-1.977e+03	GT:AD:DP:GQ:PL	1/1:2,167:169:99:3911,426,0
chrXIII	290456	.	A	C	3296.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=-0.978;QD=22.42;ReadPosRankSum=1.685;SB=-1.857e+03	GT:AD:DP:GQ:PL	1/1:1,146:147:99:3296,369,0
chrXIII	290482	.	A	C	2701	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=21.78;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2734,294,0
chrXIII	290576	.	G	A	2106	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.06;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2139,234,0
chrXIII	290664	.	T	A	3701.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.88;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,154:155:99:3701,393,0
chrXIII	290867	.	G	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.4575;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.08;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1077,114,0
chrXIII	291003	.	A	G	1336	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.87;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1369,150,0
chrXIII	291392	.	A	G	1307	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.76;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1340,147,0
chrXIII	291877	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.815;QD=20.85;ReadPosRankSum=1.630;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1451,162,0
chrXIII	292060	.	C	T	1619	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.49;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1652,177,0
chrXIII	292355	.	G	A	1064	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.08;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1097,123,0
chrXIII	292852	.	A	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.95;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1206,129,0
chrXIII	294133	.	A	G	1008	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1041,114,0
chrXIII	294166	.	T	C	932	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=16.64;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:965,108,0
chrXIII	295047	.	A	C	2404	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.34;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2437,264,0
chrXIII	295343	.	C	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.58;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1188,123,0
chrXIII	295950	.	G	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.84;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2013,213,0
chrXIII	296427	.	T	C	2136	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2169,243,0
chrXIII	298131	.	T	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1213,126,0
chrXIII	298845	.	T	C	2706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.407;DP=115;Dels=0.00;FS=2.790;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.263;QD=23.53;ReadPosRankSum=2.320;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:2,112:115:99:2739,306,0
chrXIII	299287	.	G	A	1918	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0266;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.83;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1951,213,0
chrXIII	301274	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.96;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1370,147,0
chrXIII	302548	.	A	G	5025.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.501;QD=23.93;ReadPosRankSum=1.716;SB=-2.312e+03	GT:AD:DP:GQ:PL	1/1:1,209:210:99:5025,541,0
chrXIII	303266	.	A	G	2166	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2199,246,0
chrXIII	303419	.	T	A	1562	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.69;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1595,168,0
chrXIII	303638	.	A	T	2390	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.55;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2423,255,0
chrXIII	303755	.	T	A	1245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.342;QD=17.54;ReadPosRankSum=1.683;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1278,135,0
chrXIII	303923	.	T	G	1491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.183;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;MQRankSum=0.607;QD=19.36;ReadPosRankSum=1.642;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1524,165,0
chrXIII	303930	.	C	G	1432	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.89;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1465,162,0
chrXIII	304595	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=3.030;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.616;QD=21.77;ReadPosRankSum=1.407;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1579,174,0
chrXIII	305303	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=78;Dels=0.00;FS=3.245;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.368;QD=17.35;ReadPosRankSum=1.687;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1386,150,0
chrXIII	305614	.	G	T	1342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;DP=84;Dels=0.00;FS=2.616;HaplotypeScore=6.7336;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.084;QD=15.98;ReadPosRankSum=2.212;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1375,153,0
chrXIII	305615	.	T	A	1304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.144;DP=87;Dels=0.00;FS=2.197;HaplotypeScore=8.3110;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-1.691;QD=14.99;ReadPosRankSum=3.227;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:4,83:87:99:1337,150,0
chrXIII	305906	.	G	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2770;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=24.11;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1865,198,0
chrXIII	306044	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.00;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1733,189,0
chrXIII	306769	.	C	T	1202	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.09;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1235,129,0
chrXIII	307008	.	C	T	1267	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=17.36;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1300,141,0
chrXIII	307060	.	C	T	1244	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.73;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1277,135,0
chrXIII	307069	.	T	G	1263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.254;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.9784;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;MQRankSum=0.896;QD=21.78;ReadPosRankSum=1.613;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1296,144,0
chrXIII	307219	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.9804;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=20.14;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,63:66:99:1362,141,0
chrXIII	307396	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=2;QD=19.85;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1601,171,0
chrXIII	307416	.	T	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.86;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1640,171,0
chrXIII	307426	.	A	G	1562	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=16.27;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1595,174,0
chrXIII	307796	.	G	A	1159	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=10.0052;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.11;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1192,129,0
chrXIII	308296	.	T	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.75;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1447,153,0
chrXIII	308353	.	G	C	1891	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.35;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1924,213,0
chrXIII	308753	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=4.349;HaplotypeScore=4.6121;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;MQRankSum=-0.672;QD=15.47;ReadPosRankSum=1.697;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1549,168,0
chrXIII	308762	.	A	G	1320	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=158.5073;MLEAC=2;MLEAF=1.00;MQ=38.90;MQ0=0;QD=15.17;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1353,147,0
chrXIII	308764	.	A	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=158.5073;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=15.08;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1330,147,0
chrXIII	308804	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=0;QD=13.94;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1162,120,0
chrXIII	308827	.	C	A	807	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=12.04;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:93:840,93,0
chrXIII	309061	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=17.47;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1588,171,0
chrXIII	309160	.	T	C	2590	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=24.43;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2623,285,0
chrXIII	309271	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;MQRankSum=-0.433;QD=19.37;ReadPosRankSum=1.609;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1118,126,0
chrXIII	309285	.	C	T	1235	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;QD=20.25;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1268,132,0
chrXIII	309296	.	T	C	1028	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=17.42;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1061,114,0
chrXIII	309305	.	T	A	1201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=5.441;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;MQRankSum=-0.891;QD=16.92;ReadPosRankSum=1.534;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1234,129,0
chrXIII	309424	.	G	T	2577	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=18.81;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2610,279,0
chrXIII	309446	.	G	A	1742	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=15.28;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:1,112:114:99:1775,198,0
chrXIII	309469	.	T	A	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;MQRankSum=-0.533;QD=13.40;ReadPosRankSum=2.298;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1132,123,0
chrXIII	309490	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=19.50;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1359,153,0
chrXIII	309570	.	A	G	1071	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=18.15;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1104,123,0
chrXIII	309648	.	C	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=21.25;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1563,159,0
chrXIII	309663	.	G	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.72;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1415,150,0
chrXIII	309809	.	G	C	971	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=14.49;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1004,108,0
chrXIII	309810	.	A	C	944	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.75;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:977,108,0
chrXIII	310154	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.05;FS=0.000;HaplotypeScore=12.9553;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=16.40;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1443,153,0
chrXIII	310534	.	C	T	1859	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.24;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1892,204,0
chrXIII	310656	.	C	T	2861	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=9.5744;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.45;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2894,309,0
chrXIII	310858	.	G	A	1920	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.94;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1953,204,0
chrXIII	311235	.	C	T	2641	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.5109;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.23;SB=-1.341e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2674,285,0
chrXIII	311323	.	G	A	2742	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.39;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2775,297,0
chrXIII	311452	.	T	C	1665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=22.50;ReadPosRankSum=1.685;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1698,186,0
chrXIII	311868	.	C	T	1877	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1931;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.17;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1910,207,0
chrXIII	311951	.	T	G	2020	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=75.4402;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=23.49;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2053,219,0
chrXIII	312006	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.192;DP=87;Dels=0.00;FS=5.222;HaplotypeScore=12.1318;MLEAC=2;MLEAF=1.00;MQ=60.34;MQ0=0;MQRankSum=0.274;QD=16.92;ReadPosRankSum=3.354;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:4,83:87:99:1505,165,0
chrXIII	312074	.	C	A	1755	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.29;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1788,189,0
chrXIII	312699	.	C	A	2527	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=13.7412;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.42;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,115:118:99:2560,285,0
chrXIII	312755	.	C	T	2343	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.75;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2376,252,0
chrXIII	312892	.	G	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.71;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1140,120,0
chrXIII	312920	.	C	A	945	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=16.29;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:978,108,0
chrXIII	312960	.	A	G	1524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.688;QD=20.88;ReadPosRankSum=1.685;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1557,171,0
chrXIII	313018	.	A	G	2899	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=10.4198;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.72;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,145:147:99:2932,315,0
chrXIII	313051	.	C	T	2908	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.7131;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.06;SB=-1.753e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:2941,309,0
chrXIII	313064	.	C	T	2765	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=19.89;SB=-1.863e+03	GT:AD:DP:GQ:PL	1/1:0,137:139:99:2798,294,0
chrXIII	313179	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.455;QD=21.70;ReadPosRankSum=1.663;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1118,120,0
chrXIII	313329	.	G	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.06;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1658,180,0
chrXIII	313709	.	G	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.00;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1459,156,0
chrXIII	314140	.	C	A	983	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.37;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1016,108,0
chrXIII	314484	.	G	A	1488	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.25;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1521,159,0
chrXIII	314570	.	G	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8559;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.00;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1287,141,0
chrXIII	314816	.	G	A	1349	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.41;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1382,144,0
chrXIII	314837	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.17;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1515,162,0
chrXIII	315235	.	C	T	2736	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.61;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2769,291,0
chrXIII	315372	.	T	A	1501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.129;QD=22.07;ReadPosRankSum=1.681;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1534,162,0
chrXIII	315598	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.91;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1243,135,0
chrXIII	315824	.	C	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.86;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1284,141,0
chrXIII	316408	.	T	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.90;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1347,150,0
chrXIII	316612	.	G	A	1679	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.81;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1712,180,0
chrXIII	317105	.	A	T	1902	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=4.006;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=0.772;QD=22.64;ReadPosRankSum=1.649;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1935,210,0
chrXIII	317648	.	G	A	997	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.17;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1030,117,0
chrXIII	317750	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.54;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1304,138,0
chrXIII	318108	.	A	C	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=4.601;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.624;QD=23.16;ReadPosRankSum=1.686;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1793,198,0
chrXIII	318454	.	C	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.64;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1545,168,0
chrXIII	319370	.	C	G	1388	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=21.03;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1421,156,0
chrXIII	319399	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=50.3793;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=17.98;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1220,135,0
chrXIII	319443	.	T	C	1998	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.60;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2031,216,0
chrXIII	319703	.	A	G	1501	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=0.366;QD=20.85;ReadPosRankSum=1.683;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1534,168,0
chrXIII	319734	.	G	A	1549	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.45;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1582,171,0
chrXIII	319797	.	A	C	1912	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=21.48;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1945,216,0
chrXIII	319884	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.565;DP=92;Dels=0.00;FS=12.538;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.396;QD=19.29;ReadPosRankSum=3.686;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:5,87:92:99:1808,192,0
chrXIII	319962	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=20.13;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1241,138,0
chrXIII	319980	.	A	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.07;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1196,126,0
chrXIII	320166	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1380,153,0
chrXIII	321232	.	A	G	1628	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.93;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1661,180,0
chrXIII	321247	.	A	C	2039	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.71;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2072,228,0
chrXIII	321532	.	A	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=25.35;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1478,153,0
chrXIII	321660	.	G	A	2460	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=21.39;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2493,258,0
chrXIII	321768	.	C	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.4302;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.55;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1606,171,0
chrXIII	321868	.	A	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.07;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1440,159,0
chrXIII	322684	.	A	G	1459	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.84;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1492,165,0
chrXIII	322885	.	T	C	1776	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=83;Dels=0.00;FS=2.595;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.525;QD=21.40;ReadPosRankSum=2.867;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:3,80:83:99:1809,201,0
chrXIII	323081	.	C	T	1841	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.46;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1874,192,0
chrXIII	323439	.	T	C	2352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=8.187;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.219;QD=21.98;ReadPosRankSum=2.404;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2385,261,0
chrXIII	323942	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.379;QD=17.86;ReadPosRankSum=2.385;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1390,153,0
chrXIII	323949	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.79;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1405,147,0
chrXIII	324005	.	A	T	978	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=16.30;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1011,108,0
chrXIII	324023	.	T	G	791	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=15.82;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:90:824,90,0
chrXIII	324028	.	G	A	758	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=16.48;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:84:791,84,0
chrXIII	324034	.	T	G	779	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=2.966;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=-2.030;QD=14.70;ReadPosRankSum=2.264;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:2,51:53:87:812,87,0
chrXIII	324107	.	C	T	1681	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.72;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1714,177,0
chrXIII	324350	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.04;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1620,174,0
chrXIII	324431	.	G	A	1446	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.70;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1479,159,0
chrXIII	324569	.	G	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=19.26;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1574,165,0
chrXIII	324584	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=17.14;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1490,168,0
chrXIII	324803	.	T	C	1719	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.71;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1752,195,0
chrXIII	324879	.	C	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.99;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1849,195,0
chrXIII	325046	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.52;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1553,165,0
chrXIII	325160	.	C	T	2134	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.98;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2167,228,0
chrXIII	325675	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.01;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1414,153,0
chrXIII	325728	.	A	G	1991	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.78;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2024,222,0
chrXIII	325787	.	T	A	2462	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.86;SB=-1.324e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2495,261,0
chrXIII	325826	.	G	C	2425	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.32;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2458,267,0
chrXIII	325905	.	T	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.35;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1368,147,0
chrXIII	325975	.	C	T	1660	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.84;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1693,180,0
chrXIII	326203	.	G	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.5821;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.47;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1289,144,0
chrXIII	326419	.	T	C	2134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=91;Dels=0.00;FS=3.955;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-0.179;QD=23.45;ReadPosRankSum=1.692;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:1,86:91:99:2167,234,0
chrXIII	326503	.	A	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.71;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1441,156,0
chrXIII	326713	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=64;Dels=0.00;FS=4.500;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.229;QD=16.70;ReadPosRankSum=1.676;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,61:64:99:1102,123,0
chrXIII	326714	.	A	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.02;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1105,123,0
chrXIII	327622	.	A	C	1677	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.5122;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.36;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1710,189,0
chrXIII	327938	.	A	G	2190	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2223,243,0
chrXIII	328333	.	C	T	2684	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.06;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2717,288,0
chrXIII	328866	.	T	C	1884	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.47;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1917,213,0
chrXIII	329673	.	T	C	1634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.854;HaplotypeScore=4.7442;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.162;QD=19.22;ReadPosRankSum=-1.651;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1667,183,0
chrXIII	329783	.	G	A	1058	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=10.5680;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.34;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1091,114,0
chrXIII	330241	.	C	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.2324;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.77;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1513,159,0
chrXIII	330411	.	A	G	1651	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.9386;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.447;QD=22.62;ReadPosRankSum=1.637;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1684,183,0
chrXIII	330481	.	T	C	1565	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.3551;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.08;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1598,174,0
chrXIII	330584	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.119;QD=22.76;ReadPosRankSum=1.613;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1353,147,0
chrXIII	330819	.	G	A	1921	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1954,201,0
chrXIII	332269	.	T	C	857	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.81;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:99:890,99,0
chrXIII	332376	.	T	C	705	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.74;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:738,81,0
chrXIII	332469	.	T	C	861	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.13;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:894,99,0
chrXIII	332483	.	G	C	726	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.29;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:759,81,0
chrXIII	332494	.	C	T	633	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=16.23;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:666,72,0
chrXIII	332749	.	T	C	1017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.601;QD=20.34;ReadPosRankSum=1.662;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:1050,117,0
chrXIII	332892	.	A	G	873	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=19.84;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:906,99,0
chrXIII	332932	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.50;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1140,126,0
chrXIII	333053	.	T	G	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=87;Dels=0.00;FS=6.279;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.301;QD=18.40;ReadPosRankSum=2.335;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1634,177,0
chrXIII	333260	.	C	T	862	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=18.74;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:93:895,93,0
chrXIII	333421	.	A	G	1068	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;MQRankSum=-1.176;QD=19.07;ReadPosRankSum=1.670;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1101,120,0
chrXIII	333449	.	G	A	989	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.02;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1022,108,0
chrXIII	333840	.	C	T	1383	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.44;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1416,153,0
chrXIII	333892	.	C	G	1307	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.43;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1340,147,0
chrXIII	334830	.	T	G	1897	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.31;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1930,213,0
chrXIII	335225	.	A	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.37;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1401,156,0
chrXIII	335290	.	G	C	994	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=16.03;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,58:62:99:1027,111,0
chrXIII	335301	.	A	T	1079	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=17.69;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1112,117,0
chrXIII	335383	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.51;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1087,114,0
chrXIII	335404	.	T	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.19;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1453,159,0
chrXIII	336381	.	A	G	1587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.112;QD=20.35;ReadPosRankSum=1.642;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1620,180,0
chrXIII	337377	.	G	A	2469	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.8084;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.66;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2502,261,0
chrXIII	337649	.	T	G	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=3.358;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.857;QD=21.96;ReadPosRankSum=1.694;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2031,222,0
chrXIII	337875	.	T	C	2212	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.29;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2245,243,0
chrXIII	338041	.	G	C	1954	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.94;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,96:98:99:1987,216,0
chrXIII	338329	.	T	C	2209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=3.768;HaplotypeScore=8.2229;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.762;QD=22.09;ReadPosRankSum=1.594;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2242,246,0
chrXIII	338395	.	T	C	2344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;DP=117;Dels=0.00;FS=6.787;HaplotypeScore=9.0875;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=1.056;QD=20.03;ReadPosRankSum=2.232;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:2,111:117:99:2377,264,0
chrXIII	339328	.	G	A	2205	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,105:108:99:2238,240,0
chrXIII	341020	.	G	A	823	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.57;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:90:856,90,0
chrXIII	346162	.	C	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=14.3361;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.58;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2030,216,0
chrXIII	349563	.	C	T	2704	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.3106;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.46;SB=-1.413e+03	GT:AD:DP:GQ:PL	1/1:0,124:126:99:2737,288,0
chrXIII	350144	.	T	C	2314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=4.441;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.276;QD=19.95;ReadPosRankSum=1.702;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:1,114:116:99:2347,261,0
chrXIII	350249	.	C	T	1885	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.84;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1918,213,0
chrXIII	350323	.	G	A	1424	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.26;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1457,162,0
chrXIII	353259	.	G	A	1529	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1562,165,0
chrXIII	355100	.	C	T	2176	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=26.54;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2209,231,0
chrXIII	355589	.	A	G	1405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-0.540;QD=23.03;ReadPosRankSum=1.675;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1438,156,0
chrXIII	356409	.	G	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.38;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1197,132,0
chrXIII	361270	.	T	C	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=16.33;MQ0=6;MQRankSum=-2.301;QD=0.61;ReadPosRankSum=2.301;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,35:39:6:55,6,0
chrXIII	361368	.	C	T	59.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.70;MQ0=119;MQRankSum=0.395;QD=0.43;ReadPosRankSum=-2.324;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:100,37:138:36:89,0,36
chrXIII	361725	.	A	G	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.27;MQ0=7;MQRankSum=-1.754;QD=1.41;ReadPosRankSum=1.754;SB=-2.376e+01	GT:AD:DP:GQ:PL	1/1:3,11:14:6:51,6,0
chrXIII	362082	.	G	T	263	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.37;MQ0=20;QD=5.06;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:33:296,33,0
chrXIII	362183	.	C	T	178.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.80;MQ0=83;MQRankSum=2.063;QD=1.55;ReadPosRankSum=0.895;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:63,52:115:24:211,24,0
chrXIII	362186	.	A	G	178.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.518;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.69;MQ0=86;MQRankSum=1.985;QD=1.51;ReadPosRankSum=0.817;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:66,51:118:24:211,24,0
chrXIII	362544	.	T	G	680	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=133;Dels=0.00;FS=3.112;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=11.92;MQ0=90;MQRankSum=1.874;QD=5.11;ReadPosRankSum=-0.029;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:67,66:133:81:713,81,0
chrXIII	362992	.	G	A	1829	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=19.05;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1862,192,0
chrXIII	363444	.	G	A	1407	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.10;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:70:99:1440,150,0
chrXIII	363595	.	T	C	1752	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.11;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1785,195,0
chrXIII	363840	.	C	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.15;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1577,171,0
chrXIII	363895	.	A	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.29;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1306,147,0
chrXIII	364102	.	G	A	1908	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1941,207,0
chrXIII	364252	.	G	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=20.74;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1858,201,0
chrXIII	364264	.	C	A	1756	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=20.18;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1789,189,0
chrXIII	364294	.	C	G	1552	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.16;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1585,177,0
chrXIII	364324	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-1.516;QD=17.83;ReadPosRankSum=1.624;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1174,129,0
chrXIII	364548	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=3.9391;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-0.962;QD=19.44;ReadPosRankSum=1.677;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1258,135,0
chrXIII	364627	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;MQRankSum=0.338;QD=16.82;ReadPosRankSum=1.690;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1412,156,0
chrXIII	364636	.	G	T	1475	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=16.76;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1508,162,0
chrXIII	364639	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=16.53;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1471,162,0
chrXIII	365286	.	T	G	1033	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.98;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1066,123,0
chrXIII	365359	.	C	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.02;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1114,123,0
chrXIII	365365	.	T	A	1059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;MQRankSum=1.257;QD=20.76;ReadPosRankSum=1.664;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1092,114,0
chrXIII	365504	.	T	C	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.240;QD=16.91;ReadPosRankSum=1.679;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1132,126,0
chrXIII	365505	.	G	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=16.98;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1137,123,0
chrXIII	365551	.	C	T	1083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=4.2548;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=-0.520;QD=18.05;ReadPosRankSum=1.328;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:92:1116,92,0
chrXIII	365580	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.04;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1113,117,0
chrXIII	365788	.	T	A	825	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.75;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:93:858,93,0
chrXIII	365953	.	T	C	424	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.023;DP=30;Dels=0.00;FS=9.553;HaplotypeScore=5.8759;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.559;QD=14.13;ReadPosRankSum=1.162;SB=-1.460e+02	GT:AD:DP:GQ:PL	1/1:2,27:30:37:457,37,0
chrXIII	366043	.	T	C	1076	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.52;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1109,120,0
chrXIII	366226	.	A	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.39;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1175,129,0
chrXIII	366401	.	G	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.03;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1707,183,0
chrXIII	366559	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=3.080;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-2.293;QD=21.05;ReadPosRankSum=2.372;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1380,153,0
chrXIII	366629	.	C	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.02;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1222,132,0
chrXIII	366707	.	A	G	1016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=14.1624;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.818;QD=13.92;ReadPosRankSum=0.481;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1049,117,0
chrXIII	366806	.	T	C	2311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=120;Dels=0.00;FS=6.124;HaplotypeScore=12.6624;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.280;QD=19.26;ReadPosRankSum=2.924;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:3,116:120:99:2344,255,0
chrXIII	366938	.	T	C	2330	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9377;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.78;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2363,261,0
chrXIII	367636	.	T	C	2244	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.58;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2277,249,0
chrXIII	367694	.	A	G	1846	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.74;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1879,210,0
chrXIII	367845	.	C	A	2008	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.2318;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.62;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2041,216,0
chrXIII	367942	.	A	T	2066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.481;QD=18.95;ReadPosRankSum=1.700;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2099,222,0
chrXIII	368861	.	C	T	2034	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.2170;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.76;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2067,225,0
chrXIII	369062	.	A	C	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.337;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.979;QD=20.41;ReadPosRankSum=1.682;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1441,162,0
chrXIII	369419	.	T	C	944	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.51;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:977,108,0
chrXIII	369465	.	C	T	829	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:862,90,0
chrXIII	369610	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.39;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1603,177,0
chrXIII	370224	.	A	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=18.97;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1304,144,0
chrXIII	370246	.	C	T	1598	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.75;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1631,171,0
chrXIII	370531	.	T	C	1579	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.49;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1612,180,0
chrXIII	370539	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.19;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1769,186,0
chrXIII	370569	.	T	A	1678	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=85;Dels=0.00;FS=4.058;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;MQRankSum=0.825;QD=19.74;ReadPosRankSum=1.691;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1711,180,0
chrXIII	370701	.	A	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.68;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1332,144,0
chrXIII	370707	.	A	G	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=8.195;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;MQRankSum=-0.243;QD=18.65;ReadPosRankSum=2.375;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1264,141,0
chrXIII	370747	.	T	A	1384	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=10.3533;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.96;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1417,150,0
chrXIII	370816	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=40.4615;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=18.43;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1102,120,0
chrXIII	370880	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=16.41;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1313,144,0
chrXIII	370885	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=15.66;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1333,144,0
chrXIII	370891	.	C	T	1506	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.11;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1539,159,0
chrXIII	371047	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.1494;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.29;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1243,141,0
chrXIII	371090	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=20.85;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1576,171,0
chrXIII	371117	.	A	G	1079	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=18.60;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1112,123,0
chrXIII	371128	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=17.11;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:991,111,0
chrXIII	371174	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=19.60;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1111,114,0
chrXIII	371287	.	G	A	2078	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.11;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2111,228,0
chrXIII	371315	.	G	A	1639	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.28;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1672,177,0
chrXIII	371320	.	G	T	1611	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.89;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1644,174,0
chrXIII	371362	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.94;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1548,165,0
chrXIII	371393	.	T	C	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=0.755;QD=18.62;ReadPosRankSum=1.688;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1485,162,0
chrXIII	371401	.	G	A	1545	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=19.07;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1578,165,0
chrXIII	371404	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=18.01;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1474,165,0
chrXIII	371467	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=21.02;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1294,141,0
chrXIII	371524	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=20.28;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1331,147,0
chrXIII	371527	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=19.48;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1280,147,0
chrXIII	371550	.	A	G	1106	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=18.43;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1139,123,0
chrXIII	371604	.	C	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.74;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1178,126,0
chrXIII	371677	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.854;QD=18.79;ReadPosRankSum=1.683;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1367,147,0
chrXIII	371738	.	A	G	1911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=2.623;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=1.563;QD=19.11;ReadPosRankSum=2.327;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:2,98:100:99:1944,213,0
chrXIII	371763	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;MQRankSum=1.320;QD=19.50;ReadPosRankSum=1.691;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1671,180,0
chrXIII	371851	.	A	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.57;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1364,141,0
chrXIII	371856	.	A	C	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=3.741;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.024;QD=18.06;ReadPosRankSum=1.683;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1315,147,0
chrXIII	371874	.	A	T	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-0.735;QD=18.24;ReadPosRankSum=1.575;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1237,129,0
chrXIII	371941	.	T	A	610	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=19.06;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:69:643,69,0
chrXIII	372322	.	C	T	2031	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.07;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2064,219,0
chrXIII	372700	.	G	T	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=5;QD=1.80;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:2,9:11:6:51,6,0
chrXIII	378730	.	T	C	2015	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=23.43;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2048,222,0
chrXIII	378772	.	C	G	1841	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.49;MQ0=0;QD=22.45;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1874,204,0
chrXIII	378811	.	A	G	2186	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=49.00;MQ0=0;QD=22.54;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2219,249,0
chrXIII	379174	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.074;QD=19.25;ReadPosRankSum=2.722;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1361,150,0
chrXIII	379175	.	A	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.56;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1456,150,0
chrXIII	379248	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=23.36;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1575,165,0
chrXIII	379347	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=2;QD=16.76;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:938,108,0
chrXIII	379349	.	T	C	941	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=2;QD=16.51;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:974,108,0
chrXIII	379813	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=21.07;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1508,156,0
chrXIII	379976	.	T	A	1073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=0.777;QD=18.19;ReadPosRankSum=1.374;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1106,123,0
chrXIII	379984	.	G	A	1207	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.12;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1240,129,0
chrXIII	380333	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=16.71;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1587,180,0
chrXIII	380451	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=6.092;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=1.278;QD=22.28;ReadPosRankSum=1.675;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1392,153,0
chrXIII	380979	.	A	G	1662	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5276;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=17.68;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1695,189,0
chrXIII	380997	.	T	C	1704	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=17.75;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1737,195,0
chrXIII	381204	.	T	C	1651	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.14;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1684,186,0
chrXIII	381441	.	T	C	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=4.907;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.773;QD=22.62;ReadPosRankSum=1.679;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1526,165,0
chrXIII	381609	.	A	G	988	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.7311;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.151;QD=21.02;ReadPosRankSum=1.657;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:99:1021,111,0
chrXIII	382384	.	A	T	1280	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0037;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.39;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1313,138,0
chrXIII	383224	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.13;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1781,183,0
chrXIII	383374	.	C	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.87;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2157,231,0
chrXIII	383408	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.63;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1677,180,0
chrXIII	383797	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.17;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1363,150,0
chrXIII	383914	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.80;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1201,129,0
chrXIII	383953	.	C	T	1353	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1386,144,0
chrXIII	384223	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=83;Dels=0.00;FS=4.420;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.730;QD=22.57;ReadPosRankSum=1.690;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1906,207,0
chrXIII	384334	.	C	T	1535	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.74;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1568,168,0
chrXIII	384682	.	C	G	1952	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.93;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1985,222,0
chrXIII	384775	.	G	A	2222	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.39;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2255,240,0
chrXIII	384946	.	G	A	1694	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1727,183,0
chrXIII	385015	.	T	A	1706	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.84;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1739,186,0
chrXIII	385180	.	A	G	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=6.849;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-2.212;QD=23.34;ReadPosRankSum=2.331;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1970,213,0
chrXIII	385378	.	G	A	1634	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.69;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1667,177,0
chrXIII	385805	.	T	A	2413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-0.157;QD=21.74;ReadPosRankSum=1.669;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2446,276,0
chrXIII	386654	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.34;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1457,153,0
chrXIII	387028	.	G	A	1917	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.97;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1950,204,0
chrXIII	387084	.	C	G	1574	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=16.5510;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=17.69;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1607,180,0
chrXIII	387174	.	A	G	629	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:75:662,75,0
chrXIII	387573	.	T	C	1574	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.827;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.285;QD=19.92;ReadPosRankSum=1.688;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1607,177,0
chrXIII	387621	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.81;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1237,135,0
chrXIII	387876	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=15.04;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1176,126,0
chrXIII	387879	.	A	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.56;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1125,123,0
chrXIII	388202	.	C	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.78;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1592,177,0
chrXIII	388416	.	T	C	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=-0.800;QD=22.19;ReadPosRankSum=1.599;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1209,129,0
chrXIII	388450	.	A	G	834	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.38;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:867,96,0
chrXIII	389020	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=3.579;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-1.185;QD=20.16;ReadPosRankSum=1.611;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1182,129,0
chrXIII	389031	.	C	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.18;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1107,120,0
chrXIII	389274	.	T	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.06;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1939,207,0
chrXIII	389517	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.88;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1365,144,0
chrXIII	389982	.	T	C	2121	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.57;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2154,237,0
chrXIII	390009	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=22.52;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1880,195,0
chrXIII	390057	.	C	T	1842	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=21.42;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1875,198,0
chrXIII	390075	.	T	C	1728	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.917;QD=20.33;ReadPosRankSum=1.691;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1761,195,0
chrXIII	390237	.	T	C	1597	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.79;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1630,177,0
chrXIII	390351	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1625;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.242;QD=19.51;ReadPosRankSum=1.620;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,93:96:99:1906,204,0
chrXIII	390486	.	T	G	1966	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.37;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1999,216,0
chrXIII	390519	.	C	T	2403	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.54;SB=-1.558e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2436,258,0
chrXIII	390664	.	C	G	1400	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.67;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1433,159,0
chrXIII	391419	.	T	C	1695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.721;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.329;QD=19.71;ReadPosRankSum=1.652;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1728,189,0
chrXIII	391443	.	T	C	2147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=103;Dels=0.00;FS=8.335;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.768;QD=20.84;ReadPosRankSum=2.304;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:3,99:103:99:2180,240,0
chrXIII	391619	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.20;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1750,195,0
chrXIII	391712	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.477;QD=22.03;ReadPosRankSum=1.681;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1531,171,0
chrXIII	391763	.	G	A	1889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.5475;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.565;QD=22.22;ReadPosRankSum=0.522;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1922,204,0
chrXIII	392042	.	T	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.27;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1058,117,0
chrXIII	392476	.	T	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.06;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1776,195,0
chrXIII	392483	.	C	T	1901	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.63;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1934,201,0
chrXIII	392572	.	T	C	3017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=11.4142;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.708;QD=21.40;ReadPosRankSum=-0.307;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:1,140:141:99:3050,333,0
chrXIII	392665	.	G	T	3032	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.35;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,145:149:99:3065,324,0
chrXIII	393433	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=24.87;ReadPosRankSum=1.622;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1600,171,0
chrXIII	394731	.	G	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.84;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1824,204,0
chrXIII	394852	.	C	T	2784	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=22.82;SB=-1.424e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2817,294,0
chrXIII	394901	.	G	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.34;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1986,222,0
chrXIII	394928	.	A	G	1847	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.08;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1880,210,0
chrXIII	395237	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=17.98;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1507,159,0
chrXIII	395714	.	T	C	715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=3.617;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.075;QD=15.21;ReadPosRankSum=1.657;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:81:748,81,0
chrXIII	396068	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.42;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1254,132,0
chrXIII	396453	.	C	T	2005	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.31;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:2038,216,0
chrXIII	396483	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.311;QD=17.65;ReadPosRankSum=1.688;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1427,162,0
chrXIII	396594	.	C	A	1799	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.03;FS=0.000;HaplotypeScore=17.8815;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.49;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1832,192,0
chrXIII	396788	.	T	C	2384	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.3886;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.91;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,111:114:99:2417,267,0
chrXIII	397127	.	G	C	2058	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.37;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2091,228,0
chrXIII	397386	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.04;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1548,165,0
chrXIII	397685	.	C	T	1023	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.27;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1056,114,0
chrXIII	398046	.	T	C	907	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.90;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:940,102,0
chrXIII	398240	.	A	G	2068	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.24;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2101,228,0
chrXIII	398295	.	A	G	1576	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=1.311;QD=21.30;ReadPosRankSum=1.685;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1609,177,0
chrXIII	398366	.	G	C	961	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=15.75;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:994,108,0
chrXIII	398377	.	A	G	941	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=16.22;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:974,108,0
chrXIII	398491	.	A	G	1248	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.81;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1281,138,0
chrXIII	398620	.	A	C	1610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=70;Dels=0.00;FS=4.111;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-1.474;QD=23.00;ReadPosRankSum=1.681;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,67:70:99:1643,177,0
chrXIII	398818	.	T	C	1209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=3.345;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.962;QD=22.39;ReadPosRankSum=1.668;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1242,135,0
chrXIII	398862	.	C	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.56;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1760,192,0
chrXIII	398994	.	C	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.97;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1439,156,0
chrXIII	399106	.	A	G	1231	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.23;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1264,138,0
chrXIII	399177	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.3795;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-1.675;QD=22.28;ReadPosRankSum=1.675;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1392,153,0
chrXIII	399408	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=18.93;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1434,150,0
chrXIII	399414	.	C	A	1175	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.80;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1208,129,0
chrXIII	399479	.	A	C	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.405;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=1.489;QD=0.33;ReadPosRankSum=-2.405;SB=-4.376e+01	GT:AD:DP:GQ:PL	1/1:52,2:54:6:49,6,0
chrXIII	399956	.	C	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.13;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1449,159,0
chrXIII	400718	.	C	G	1360	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.86;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1393,153,0
chrXIII	400849	.	G	A	2388	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.4483;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.13;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2421,249,0
chrXIII	400907	.	A	G	1895	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.40;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1928,210,0
chrXIII	400908	.	C	T	1947	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7630;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.72;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:1980,207,0
chrXIII	401233	.	A	G	2287	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.06;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2320,252,0
chrXIII	401247	.	A	C	2017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.556;QD=18.85;ReadPosRankSum=1.699;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:1,105:107:99:2050,222,0
chrXIII	401494	.	T	G	1846	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.72;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1879,204,0
chrXIII	401933	.	C	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=24.39;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1545,165,0
chrXIII	402072	.	G	A	1934	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4370;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=24.79;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1967,207,0
chrXIII	402092	.	G	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.01;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1858,195,0
chrXIII	402234	.	C	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.68;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1666,174,0
chrXIII	402254	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.12;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1765,186,0
chrXIII	402422	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.337;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.760;QD=22.89;ReadPosRankSum=1.672;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1338,150,0
chrXIII	402504	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.89;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1299,138,0
chrXIII	402537	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.03;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1333,147,0
chrXIII	402714	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.207;QD=20.32;ReadPosRankSum=1.680;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1374,150,0
chrXIII	403215	.	A	G	1409	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=21.03;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1442,159,0
chrXIII	403250	.	A	G	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-1.098;QD=16.32;ReadPosRankSum=1.563;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1371,153,0
chrXIII	403256	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=16.45;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1398,156,0
chrXIII	403445	.	T	C	1776	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.00;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1809,201,0
chrXIII	403553	.	G	T	1326	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=22.47;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1359,144,0
chrXIII	403634	.	T	A	1961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=9.833;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=0.924;QD=21.32;ReadPosRankSum=2.343;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1994,213,0
chrXIII	403773	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0376;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=23.81;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1747,177,0
chrXIII	403801	.	A	G	1321	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.39;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1354,147,0
chrXIII	403960	.	A	C	2067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.759;QD=23.22;ReadPosRankSum=1.693;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2100,228,0
chrXIII	404196	.	G	A	2269	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.47;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2302,240,0
chrXIII	404319	.	G	A	3610.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=23.29;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,153:155:99:3610,390,0
chrXIII	404584	.	A	G	2059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-0.277;QD=20.59;ReadPosRankSum=1.628;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2092,228,0
chrXIII	404593	.	T	C	2014	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=19.55;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2047,228,0
chrXIII	404983	.	A	G	870	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.76;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:903,99,0
chrXIII	405164	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.7839;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.89;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1412,153,0
chrXIII	405193	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.80;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1247,135,0
chrXIII	405305	.	A	G	1016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=55;Dels=0.00;FS=8.268;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.965;QD=18.47;ReadPosRankSum=2.354;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:2,49:55:99:1049,114,0
chrXIII	405463	.	G	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.69;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1336,144,0
chrXIII	405638	.	G	A	1042	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.1923;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=14.27;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1075,117,0
chrXIII	405726	.	A	G	1913	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=24.53;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1946,213,0
chrXIII	405762	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1479,162,0
chrXIII	405877	.	C	G	951	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.20;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:984,105,0
chrXIII	406116	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1002,108,0
chrXIII	406151	.	T	C	697	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.12;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:81:730,81,0
chrXIII	406222	.	A	T	1393	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.90;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1426,153,0
chrXIII	406240	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.42;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1507,162,0
chrXIII	406307	.	T	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.82;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1120,114,0
chrXIII	406330	.	G	A	916	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.28;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:949,105,0
chrXIII	406355	.	T	C	1073	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.16;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1106,123,0
chrXIII	406917	.	G	C	2174	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6386;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.13;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2207,249,0
chrXIII	407112	.	G	A	1688	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2735;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.37;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1721,183,0
chrXIII	407179	.	G	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1610,171,0
chrXIII	407242	.	T	C	1774	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.63;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1807,204,0
chrXIII	407557	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.10;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1007,111,0
chrXIII	408131	.	C	T	1586	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.73;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1619,174,0
chrXIII	408484	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.33;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:865,99,0
chrXIII	408987	.	G	A	2490	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=8.9313;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.84;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2523,267,0
chrXIII	409222	.	A	G	66.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.288;DP=65;Dels=0.03;FS=25.404;HaplotypeScore=20.5249;MLEAC=1;MLEAF=0.500;MQ=46.26;MQ0=0;MQRankSum=0.297;QD=1.02;ReadPosRankSum=-3.117;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:50,13:63:96:96,0,158
chrXIII	409225	.	A	T	47.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;DP=60;Dels=0.02;FS=40.437;HaplotypeScore=22.3069;MLEAC=1;MLEAF=0.500;MQ=45.94;MQ0=0;MQRankSum=1.622;QD=0.78;ReadPosRankSum=-4.606;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,13:59:77:77,0,165
chrXIII	409643	.	A	G	238	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=47.81;MQ0=0;QD=11.33;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:30:271,30,0
chrXIII	409650	.	C	T	311	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=12.96;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:36:344,36,0
chrXIII	409788	.	G	A	832	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.21;SB=-8.901e+01	GT:AD:DP:GQ:PL	1/1:0,32:33:93:865,93,0
chrXIII	409894	.	T	C	699	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.97;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:732,81,0
chrXIII	410026	.	T	C	1921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=-1.555;QD=24.63;ReadPosRankSum=1.643;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1954,216,0
chrXIII	410071	.	C	T	1600	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=23.88;SB=-2.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1633,174,0
chrXIII	410365	.	A	G	4620.01	PASS	AC=2;AF=1.00;AN=2;DP=199;Dels=0.00;FS=0.000;HaplotypeScore=7.1332;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.22;SB=-2.171e+03	GT:AD:DP:GQ:PL	1/1:0,195:199:99:4620,498,0
chrXIII	410551	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.260;QD=19.32;ReadPosRankSum=1.689;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:1,79:85:99:1675,183,0
chrXIII	410660	.	C	T	8838.01	filter	AC=2;AF=1.00;AN=2;DP=397;Dels=0.00;FS=0.000;HaplotypeScore=9.6693;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.26;SB=-3.494e+03	GT:AD:DP:GQ:PL	1/1:0,397:397:99:8838,987,0
chrXIII	411113	.	C	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.85;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1672,177,0
chrXIII	411358	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.04;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1430,153,0
chrXIII	411619	.	C	T	1621	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=24.19;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1654,174,0
chrXIII	411958	.	T	C	1674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.208;QD=22.03;ReadPosRankSum=1.640;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1707,186,0
chrXIII	411991	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.88;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1776,189,0
chrXIII	412177	.	C	T	2150	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2183,234,0
chrXIII	412378	.	T	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.53;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1480,153,0
chrXIII	412542	.	A	G	1918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=81;Dels=0.00;FS=3.661;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.294;QD=23.68;ReadPosRankSum=1.688;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1951,210,0
chrXIII	412783	.	C	T	2779	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.0457;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.96;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2812,309,0
chrXIII	412878	.	C	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=10.4017;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.37;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1539,168,0
chrXIII	413447	.	C	T	1949	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.52;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1982,210,0
chrXIII	414299	.	G	A	939	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.16;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:972,102,0
chrXIII	414344	.	G	A	833	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.83;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:866,90,0
chrXIII	414447	.	C	T	876	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.90;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,38:40:96:909,96,0
chrXIII	414548	.	C	T	1041	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.64;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1074,114,0
chrXIII	415068	.	G	A	2092	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=22.49;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2125,228,0
chrXIII	415331	.	T	C	2001	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.5615;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.523;QD=23.82;ReadPosRankSum=1.690;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:2034,225,0
chrXIII	415454	.	G	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=19.47;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1201,126,0
chrXIII	415495	.	A	T	1233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-1.586;QD=17.37;ReadPosRankSum=1.683;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1266,135,0
chrXIII	415535	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.5534;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.13;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1850,195,0
chrXIII	415566	.	A	G	2416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.606;QD=21.19;ReadPosRankSum=1.701;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:1,109:114:99:2449,264,0
chrXIII	415744	.	A	G	1800	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.68;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1833,195,0
chrXIII	415772	.	T	G	1654	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;MQRankSum=-0.094;QD=22.35;ReadPosRankSum=1.685;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1687,186,0
chrXIII	415813	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=21.71;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1466,162,0
chrXIII	416114	.	T	C	2138	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=19.44;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2171,240,0
chrXIII	416124	.	C	T	2166	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.00;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2199,231,0
chrXIII	416258	.	A	G	2054	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=19.94;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2087,228,0
chrXIII	416274	.	A	G	1483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3170;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;MQRankSum=-0.764;QD=15.78;ReadPosRankSum=1.695;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1516,168,0
chrXIII	416283	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.2909;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=16.44;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1480,153,0
chrXIII	416781	.	C	T	2872	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.2940;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.74;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2905,306,0
chrXIII	416823	.	C	T	2995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.199;QD=24.75;ReadPosRankSum=-1.347;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:1,116:121:99:3028,321,0
chrXIII	416929	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.65;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1121,117,0
chrXIII	417054	.	C	A	1880	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.36;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1913,207,0
chrXIII	417062	.	C	T	1940	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.86;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1973,219,0
chrXIII	417126	.	A	C	2191	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.7272;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.10;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2224,243,0
chrXIII	417249	.	C	T	1441	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.62;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1474,159,0
chrXIII	417403	.	G	A	1515	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.61;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1548,171,0
chrXIII	417450	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=24.68;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1711,186,0
chrXIII	417524	.	C	T	2168	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.35;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2201,228,0
chrXIII	418089	.	T	C	1661	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.15;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1694,186,0
chrXIII	418206	.	T	C	1159	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.29;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1192,129,0
chrXIII	418982	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.95;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1505,162,0
chrXIII	419424	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.2218;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.89;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1783,192,0
chrXIII	419667	.	G	A	2851	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.56;SB=-1.495e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2884,297,0
chrXIII	419718	.	C	A	2118	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.53;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2151,228,0
chrXIII	419976	.	G	A	1995	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.42;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2028,216,0
chrXIII	420051	.	G	C	1928	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.51;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1961,213,0
chrXIII	420098	.	A	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.29;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1798,186,0
chrXIII	420348	.	A	T	1798	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.063;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;MQRankSum=0.397;QD=21.40;ReadPosRankSum=1.690;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1831,201,0
chrXIII	420356	.	G	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=20.78;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1924,204,0
chrXIII	420528	.	C	T	1642	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.03;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=23.13;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1675,174,0
chrXIII	420568	.	C	T	1384	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=21.29;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1417,150,0
chrXIII	420683	.	C	T	1749	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=22.14;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1782,183,0
chrXIII	420689	.	C	T	1722	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.13;MQ0=0;QD=21.26;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1755,183,0
chrXIII	420702	.	G	C	1702	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=19.79;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1735,195,0
chrXIII	420786	.	G	A	2333	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=90.2818;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=22.65;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2366,246,0
chrXIII	420832	.	C	T	2147	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=20.84;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2180,228,0
chrXIII	420885	.	G	A	2115	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=22.74;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2148,222,0
chrXIII	420892	.	C	T	1994	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=22.16;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2027,216,0
chrXIII	420966	.	T	G	503	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;QD=18.63;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,26:27:60:536,60,0
chrXIII	420982	.	G	A	56.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;DP=30;Dels=0.00;FS=5.721;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.97;MQ0=0;MQRankSum=0.559;QD=1.87;ReadPosRankSum=4.476;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:19,11:30:86:86,0,328
chrXIII	421039	.	G	A	436	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.79;MQ0=0;QD=17.44;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:48:469,48,0
chrXIII	421102	.	A	T	260	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=37.54;MQ0=0;MQRankSum=-1.519;QD=16.25;ReadPosRankSum=1.519;SB=-1.492e-02	GT:AD:DP:GQ:PL	1/1:1,15:16:30:293,30,0
chrXIII	421309	.	A	T	1010	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.06;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1043,111,0
chrXIII	421314	.	A	G	960	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=18.82;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,50:51:99:993,111,0
chrXIII	421535	.	G	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.42;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2024,219,0
chrXIII	421708	.	A	C	2266	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.70;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2299,258,0
chrXIII	421952	.	T	C	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.575;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.887;QD=20.67;ReadPosRankSum=1.690;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,81:84:99:1769,192,0
chrXIII	422449	.	G	A	2197	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.62;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2230,240,0
chrXIII	422548	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.97;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1483,162,0
chrXIII	422714	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.83;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1452,159,0
chrXIII	422731	.	T	C	1362	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5592;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.97;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1395,150,0
chrXIII	423169	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.82;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1480,162,0
chrXIII	423520	.	C	T	1506	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.56;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1539,168,0
chrXIII	423541	.	G	A	1617	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.56;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1650,177,0
chrXIII	423603	.	A	T	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.192;QD=18.98;ReadPosRankSum=1.694;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1741,186,0
chrXIII	423901	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.18;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1600,174,0
chrXIII	424537	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=59;Dels=0.00;FS=12.411;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.105;QD=19.61;ReadPosRankSum=2.844;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:3,55:59:99:1190,126,0
chrXIII	424856	.	A	T	2053	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.03;FS=0.000;HaplotypeScore=19.6296;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=15.79;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2086,225,0
chrXIII	424897	.	T	G	968	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=17.60;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1001,114,0
chrXIII	425034	.	A	T	2477	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.04;FS=0.000;HaplotypeScore=26.1505;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=14.49;SB=-1.839e+03	GT:AD:DP:GQ:PL	1/1:0,165:165:99:2510,264,0
chrXIII	425035	.	C	T	2456	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.01;FS=0.000;HaplotypeScore=26.1505;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=14.36;SB=-1.888e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:2489,267,0
chrXIII	425123	.	A	T	3805.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.713;QD=21.14;ReadPosRankSum=1.654;SB=-2.182e+03	GT:AD:DP:GQ:PL	1/1:1,179:180:99:3805,405,0
chrXIII	425138	.	A	G	3137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;DP=149;Dels=0.00;FS=5.787;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=1.465;QD=21.05;ReadPosRankSum=2.952;SB=-1.715e+03	GT:AD:DP:GQ:PL	1/1:3,142:148:99:3170,345,0
chrXIII	425705	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1368,153,0
chrXIII	425898	.	T	C	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.818;QD=21.39;ReadPosRankSum=1.684;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,71:74:99:1616,174,0
chrXIII	425957	.	T	C	1168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=2.724;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.189;QD=22.90;ReadPosRankSum=2.354;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:99:1201,132,0
chrXIII	426159	.	A	C	1925	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.48;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1958,213,0
chrXIII	426219	.	T	A	1158	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=85;Dels=0.00;FS=4.367;HaplotypeScore=23.0848;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.521;QD=13.62;ReadPosRankSum=1.690;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1191,132,0
chrXIII	426590	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.23;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,52:56:99:1054,114,0
chrXIII	426934	.	T	C	2037	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.2930;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=23.41;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2070,231,0
chrXIII	426949	.	C	A	1968	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=22.36;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2001,219,0
chrXIII	426952	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.82;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1803,204,0
chrXIII	427123	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.10;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1889,204,0
chrXIII	427279	.	T	C	2082	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8700;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.46;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2115,231,0
chrXIII	427327	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.7337;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.752;QD=19.56;ReadPosRankSum=1.634;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2106,231,0
chrXIII	428833	.	A	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.2169;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.64;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1622,174,0
chrXIII	429376	.	A	G	1337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=3.216;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.133;QD=20.26;ReadPosRankSum=1.626;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1370,153,0
chrXIII	429465	.	G	C	1491	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1524,165,0
chrXIII	429559	.	G	A	2320	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.3213;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.31;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2353,249,0
chrXIII	429941	.	A	T	5655.01	PASS	AC=2;AF=1.00;AN=2;DP=228;Dels=0.00;FS=0.000;HaplotypeScore=8.6084;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.80;SB=-2.471e+03	GT:AD:DP:GQ:PL	1/1:0,228:228:99:5655,604,0
chrXIII	430146	.	A	G	1885	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.71;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1918,207,0
chrXIII	430167	.	C	A	2053	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.81;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2086,219,0
chrXIII	430438	.	A	G	2146	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=23.33;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2179,240,0
chrXIII	430487	.	G	A	1676	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.65;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1709,189,0
chrXIII	430685	.	G	A	1544	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.06;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1577,171,0
chrXIII	430694	.	A	G	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;MQRankSum=-0.967;QD=18.18;ReadPosRankSum=1.597;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1433,156,0
chrXIII	430795	.	T	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=18.28;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1477,162,0
chrXIII	430800	.	T	C	1520	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=19.24;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1553,168,0
chrXIII	430847	.	T	C	1420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;MQRankSum=0.209;QD=15.43;ReadPosRankSum=1.694;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1453,156,0
chrXIII	430856	.	G	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.7816;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=14.86;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1341,138,0
chrXIII	430895	.	A	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.52;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1536,159,0
chrXIII	430948	.	G	C	1074	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=19.53;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1107,123,0
chrXIII	431202	.	C	T	1832	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=23.19;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1865,192,0
chrXIII	431689	.	C	T	1015	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.71;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1048,114,0
chrXIII	431763	.	T	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.92;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1085,120,0
chrXIII	432008	.	A	G	657	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=1.398;QD=21.19;ReadPosRankSum=1.621;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:75:690,75,0
chrXIII	432019	.	T	A	734	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.39;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:767,84,0
chrXIII	432613	.	G	A	949	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=17.91;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:982,105,0
chrXIII	432625	.	C	T	951	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;QD=18.65;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:984,102,0
chrXIII	432667	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.35;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1252,132,0
chrXIII	432856	.	G	C	1795	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.44;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1828,195,0
chrXIII	433010	.	T	A	1982	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.7357;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=1.619;QD=21.09;ReadPosRankSum=1.582;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2015,219,0
chrXIII	433052	.	T	A	3474.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;MQRankSum=0.225;QD=22.56;ReadPosRankSum=1.710;SB=-1.905e+03	GT:AD:DP:GQ:PL	1/1:1,153:154:99:3474,384,0
chrXIII	433082	.	G	A	3712.01	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=23.64;SB=-2.019e+03	GT:AD:DP:GQ:PL	1/1:0,156:157:99:3712,385,0
chrXIII	433201	.	C	T	2253	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.2439;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=23.72;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2286,243,0
chrXIII	433223	.	A	G	2194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=9.162;HaplotypeScore=2.7176;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.238;QD=21.51;ReadPosRankSum=2.931;SB=-1.313e+03	GT:AD:DP:GQ:PL	1/1:3,99:102:99:2227,246,0
chrXIII	433274	.	T	C	2930	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.304;DP=135;Dels=0.00;FS=3.043;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-2.359;QD=21.70;ReadPosRankSum=2.413;SB=-1.688e+03	GT:AD:DP:GQ:PL	1/1:2,133:135:99:2963,324,0
chrXIII	433376	.	G	A	1058	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.72;MQ0=0;QD=11.14;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1091,114,0
chrXIII	433409	.	A	C	944	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.66;MQ0=0;MQRankSum=-0.109;QD=11.80;ReadPosRankSum=2.388;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:2,77:80:99:977,108,0
chrXIII	433422	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=2.029;QD=12.61;ReadPosRankSum=2.390;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1067,117,0
chrXIII	433474	.	G	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.66;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1783,186,0
chrXIII	433519	.	A	G	1984	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.2877;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=21.33;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2017,219,0
chrXIII	433544	.	G	T	2689	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=24.23;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2722,285,0
chrXIII	433574	.	C	T	2803	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.42;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2836,309,0
chrXIII	433720	.	A	G	1087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;MQRankSum=0.334;QD=19.07;ReadPosRankSum=1.672;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1120,126,0
chrXIII	433952	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.66;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1252,135,0
chrXIII	434151	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.06;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1765,183,0
chrXIII	434234	.	G	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5017;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.56;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1760,183,0
chrXIII	434510	.	T	C	1072	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=14.89;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1105,123,0
chrXIII	434538	.	G	A	1110	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=16.32;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1143,120,0
chrXIII	434776	.	G	A	3664.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=16.8733;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.76;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,147:148:99:3664,387,0
chrXIII	434958	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.87;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1771,186,0
chrXIII	436081	.	A	G	707	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.20;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:81:740,81,0
chrXIII	436089	.	A	C	740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=-0.087;QD=18.05;ReadPosRankSum=1.559;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:87:773,87,0
chrXIII	436140	.	C	T	887	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.06;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:52:96:920,96,0
chrXIII	436183	.	G	A	862	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.74;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:895,96,0
chrXIII	436475	.	G	A	653	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.65;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:72:686,72,0
chrXIII	436595	.	A	C	1874	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=4.437;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.594;QD=24.99;ReadPosRankSum=1.686;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1907,207,0
chrXIII	436769	.	G	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.14;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1491,156,0
chrXIII	436907	.	C	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1567,165,0
chrXIII	437012	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.65;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1664,183,0
chrXIII	437041	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.61;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1249,138,0
chrXIII	437167	.	T	C	1915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=1.569;QD=22.27;ReadPosRankSum=1.691;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1948,213,0
chrXIII	437427	.	A	G	757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.506;QD=16.46;ReadPosRankSum=1.657;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:90:790,90,0
chrXIII	437529	.	G	A	1127	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.34;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1160,123,0
chrXIII	438469	.	C	T	1826	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4594;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.54;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1859,201,0
chrXIII	438807	.	C	T	3493.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.29;SB=-1.787e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3493,364,0
chrXIII	439294	.	A	T	1483	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.1592;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.577;QD=18.54;ReadPosRankSum=1.643;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1516,165,0
chrXIII	439396	.	T	C	1044	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.216;QD=22.21;ReadPosRankSum=1.585;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1077,117,0
chrXIII	439839	.	T	C	1232	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.61;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1265,141,0
chrXIII	439990	.	A	G	1551	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.16;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1584,171,0
chrXIII	440197	.	A	G	2919	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=24.32;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2952,324,0
chrXIII	440349	.	A	G	1686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.594;QD=22.48;ReadPosRankSum=1.594;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1719,186,0
chrXIII	440381	.	A	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.30;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1673,180,0
chrXIII	440388	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.42;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1605,168,0
chrXIII	440514	.	C	A	1177	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=17.31;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1210,129,0
chrXIII	440533	.	T	C	1000	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=16.95;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1033,111,0
chrXIII	440535	.	T	C	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=4.486;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-1.263;QD=16.56;ReadPosRankSum=1.674;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1010,111,0
chrXIII	440546	.	A	G	888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.706;QD=16.44;ReadPosRankSum=1.668;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:921,102,0
chrXIII	440602	.	G	C	1004	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.31;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1037,114,0
chrXIII	440791	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=15.16;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:96:867,96,0
chrXIII	440792	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-1.476;QD=15.44;ReadPosRankSum=1.668;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:93:867,93,0
chrXIII	441110	.	T	G	790	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5317;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=15.80;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:823,93,0
chrXIII	441175	.	G	A	885	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.24;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:918,99,0
chrXIII	441855	.	C	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.35;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1486,156,0
chrXIII	442338	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.02;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1376,147,0
chrXIII	442504	.	G	A	1595	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=3.209;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=0.905;QD=23.46;ReadPosRankSum=1.474;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1628,168,0
chrXIII	442619	.	C	G	1424	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.64;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1457,159,0
chrXIII	442817	.	C	T	1926	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.78;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1959,207,0
chrXIII	442835	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.11;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1697,189,0
chrXIII	442877	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.440;DP=83;Dels=0.00;FS=3.063;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;MQRankSum=0.730;QD=18.20;ReadPosRankSum=0.605;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1544,140,0
chrXIII	442886	.	T	A	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.163;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.501;QD=17.52;ReadPosRankSum=1.017;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1540,143,0
chrXIII	442916	.	A	G	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.178;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=0.993;QD=15.55;ReadPosRankSum=-1.224;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1215,112,0
chrXIII	443042	.	C	T	2742	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.4814;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.44;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2775,297,0
chrXIII	443954	.	G	C	1983	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.10;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2016,222,0
chrXIII	444299	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1405,147,0
chrXIII	444677	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.10;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1558,174,0
chrXIII	444797	.	T	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.23;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1085,120,0
chrXIII	445007	.	G	A	768	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.20;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:801,84,0
chrXIII	445016	.	A	G	659	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.2795;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=15.33;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:692,75,0
chrXIII	445293	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1523;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.35;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1549,168,0
chrXIII	445660	.	C	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.00;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1477,159,0
chrXIII	445927	.	A	G	1733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=83;Dels=0.00;FS=3.040;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=0.797;QD=20.88;ReadPosRankSum=2.360;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:2,80:83:99:1766,195,0
chrXIII	446239	.	A	T	1121	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.38;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1154,120,0
chrXIII	446260	.	T	C	928	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=15.47;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:961,105,0
chrXIII	446284	.	T	C	809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=4.150;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;MQRankSum=-0.240;QD=12.26;ReadPosRankSum=1.679;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:93:842,93,0
chrXIII	446574	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.1201;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=19.88;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1186,129,0
chrXIII	446761	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.804;QD=19.41;ReadPosRankSum=2.263;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:2,65:68:99:1353,156,0
chrXIII	446935	.	C	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.53;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1107,117,0
chrXIII	446980	.	T	C	962	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.49;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:995,111,0
chrXIII	446995	.	A	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.02;FS=0.000;HaplotypeScore=5.8217;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.12;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1102,120,0
chrXIII	447481	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.86;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1212,123,0
chrXIII	447488	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=17.11;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1145,126,0
chrXIII	447556	.	A	G	723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.096;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;MQRankSum=0.306;QD=14.18;ReadPosRankSum=1.664;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:84:756,84,0
chrXIII	447559	.	T	C	700	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=14.29;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:81:733,81,0
chrXIII	447588	.	G	A	655	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=15.23;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:688,72,0
chrXIII	447640	.	G	A	906	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.49;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:939,102,0
chrXIII	447874	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.63;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1798,192,0
chrXIII	448333	.	G	A	776	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=15.22;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:90:809,90,0
chrXIII	448334	.	A	G	746	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=15.54;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:87:779,87,0
chrXIII	448374	.	C	T	783	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=17.02;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:816,87,0
chrXIII	448632	.	G	A	1336	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=21.55;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1369,147,0
chrXIII	448688	.	C	G	975	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=16.25;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1008,111,0
chrXIII	448690	.	T	C	767	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.90;MQ0=0;QD=14.47;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:90:800,90,0
chrXIII	448702	.	T	C	698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;MQRankSum=-0.624;QD=13.96;ReadPosRankSum=1.594;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:81:731,81,0
chrXIII	448719	.	G	A	667	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=13.34;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:75:700,75,0
chrXIII	448755	.	C	T	550	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=10.58;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:63:583,63,0
chrXIII	448756	.	G	T	544	SnpCluster	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=10.46;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:63:577,63,0
chrXIII	448761	.	A	C	562	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.72;MQ0=0;MQRankSum=-0.770;QD=10.22;ReadPosRankSum=1.668;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:66:595,66,0
chrXIII	448777	.	T	C	776	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1180;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;MQRankSum=-1.453;QD=12.52;ReadPosRankSum=1.621;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:90:809,90,0
chrXIII	448943	.	A	T	1288	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=18.14;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1321,144,0
chrXIII	450205	.	C	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8584;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.30;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1572,168,0
chrXIII	451041	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.07;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1648,174,0
chrXIII	453686	.	C	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.56;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1205,132,0
chrXIII	454966	.	T	C	723	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.43;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:756,84,0
chrXIII	455073	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.0801;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.85;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1448,165,0
chrXIII	455166	.	T	C	1956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.039;QD=23.01;ReadPosRankSum=1.691;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1989,219,0
chrXIII	455319	.	T	C	1964	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.25;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1997,222,0
chrXIII	455541	.	A	G	3331.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.170;QD=22.21;ReadPosRankSum=1.685;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:1,147:150:99:3331,366,0
chrXIII	456415	.	G	A	2465	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.1683;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.81;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2498,264,0
chrXIII	456638	.	A	G	2152	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.4654;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.74;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2185,237,0
chrXIII	457614	.	G	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.57;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1392,153,0
chrXIII	458213	.	C	G	954	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.74;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:987,108,0
chrXIII	458720	.	G	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.0705;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.49;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1592,171,0
chrXIII	459995	.	A	C	1162	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.75;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1195,129,0
chrXIII	460285	.	A	G	2299	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.09;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2332,264,0
chrXIII	461207	.	A	T	865	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.80;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:898,93,0
chrXIII	461530	.	G	A	924	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=18.12;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:957,102,0
chrXIII	461653	.	A	G	1591	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=19.17;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1624,174,0
chrXIII	461659	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.59;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1613,171,0
chrXIII	462232	.	C	T	1132	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.77;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1165,120,0
chrXIII	462409	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1507;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.49;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1387,153,0
chrXIII	462535	.	G	C	1870	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.00;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1903,207,0
chrXIII	462716	.	G	A	528	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=7.65;SB=-1.700e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:60:561,60,0
chrXIII	462773	.	A	T	2370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;DP=107;Dels=0.00;FS=3.033;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.576;QD=22.15;ReadPosRankSum=2.358;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2403,255,0
chrXIII	462976	.	A	G	2033	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.94;MQ0=0;QD=23.64;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2066,231,0
chrXIII	463091	.	C	T	1840	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.11;MQ0=0;QD=21.90;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1873,198,0
chrXIII	463170	.	A	C	1707	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=20.82;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1740,192,0
chrXIII	463171	.	C	G	1668	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=20.34;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1701,192,0
chrXIII	463232	.	C	T	1041	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=51.8025;MLEAC=2;MLEAF=1.00;MQ=36.42;MQ0=0;QD=16.79;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1074,111,0
chrXIII	463247	.	C	T	915	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=0;QD=14.76;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:948,105,0
chrXIII	463261	.	A	C	1030	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=16.09;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1063,117,0
chrXIII	463264	.	G	A	1030	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;QD=15.37;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1063,111,0
chrXIII	463330	.	T	C	754	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=39.27;MQ0=7;QD=14.23;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:90:787,90,0
chrXIII	463337	.	A	T	713	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.06;MQ0=7;QD=14.26;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:78:746,78,0
chrXIII	463367	.	C	A	328	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=7;QD=11.71;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:39:361,39,0
chrXIII	463374	.	C	T	265	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=6.8885;MLEAC=2;MLEAF=1.00;MQ=27.22;MQ0=7;QD=9.46;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:33:298,33,0
chrXIII	463395	.	C	G	302	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=2;QD=7.74;SB=-2.060e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:39:335,39,0
chrXIII	463407	.	G	A	463	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=10.29;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:51:496,51,0
chrXIII	463410	.	G	A	539	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;QD=11.00;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:60:572,60,0
chrXIII	463412	.	G	A	563	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;QD=11.49;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:63:596,63,0
chrXIII	463414	.	G	A	601	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=11.78;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:69:634,69,0
chrXIII	463419	.	C	T	641	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.76;MQ0=0;QD=8.01;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:72:674,72,0
chrXIII	464615	.	G	A	471	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.44;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,26:27:57:504,57,0
chrXIII	465080	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5372;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.98;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1250,135,0
chrXIII	465559	.	T	C	1568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.367;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.231;QD=20.63;ReadPosRankSum=0.729;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1601,171,0
chrXIII	465619	.	G	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.27;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1748,186,0
chrXIII	465767	.	C	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.63;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1677,180,0
chrXIII	466416	.	C	A	2600	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.22;SB=-1.319e+03	GT:AD:DP:GQ:PL	1/1:0,114:117:99:2633,279,0
chrXIII	466614	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.51;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1560,171,0
chrXIII	468051	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.35;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1478,159,0
chrXIII	468328	.	G	A	1857	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.11;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1890,198,0
chrXIII	468499	.	A	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.29;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1103,117,0
chrXIII	468937	.	T	C	2026	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2059,222,0
chrXIII	469382	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5962;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.74;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1903,210,0
chrXIII	470011	.	G	C	1467	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.10;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1500,165,0
chrXIII	470206	.	A	G	1855	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.6108;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.74;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1888,210,0
chrXIII	470654	.	C	A	2048	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=18.29;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2081,222,0
chrXIII	470666	.	G	A	2243	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.17;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2276,243,0
chrXIII	470916	.	T	C	955	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=15.40;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:988,111,0
chrXIII	471649	.	G	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.21;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1518,165,0
chrXIII	472484	.	A	G	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.368;QD=18.77;ReadPosRankSum=1.672;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1103,123,0
chrXIII	472763	.	C	T	786	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.46;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:90:819,90,0
chrXIII	473006	.	A	G	375	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=22.06;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,16:17:45:408,45,0
chrXIII	473172	.	T	C	1045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=7.561;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;MQRankSum=1.613;QD=17.71;ReadPosRankSum=2.367;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1078,120,0
chrXIII	473320	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.67;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1087,120,0
chrXIII	473383	.	T	C	815	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.52;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:848,93,0
chrXIII	473407	.	C	G	347	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=9.91;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:42:380,42,0
chrXIII	473450	.	A	G	478	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=14.94;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:57:511,57,0
chrXIII	473541	.	G	A	628	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;QD=13.36;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:72:661,72,0
chrXIII	473564	.	A	G	837	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=16.41;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:870,93,0
chrXIII	473594	.	T	A	1022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.00;FS=9.058;HaplotypeScore=3.4387;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;MQRankSum=-1.146;QD=14.39;ReadPosRankSum=2.309;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1055,114,0
chrXIII	473599	.	T	G	1049	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5659;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.43;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1082,120,0
chrXIII	473747	.	T	A	1389	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=22.05;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1422,156,0
chrXIII	473888	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=0.147;QD=21.66;ReadPosRankSum=1.674;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1311,144,0
chrXIII	474275	.	C	T	1292	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.49;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1325,138,0
chrXIII	474350	.	C	T	1083	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.75;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1116,117,0
chrXIII	474359	.	A	G	930	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=16.91;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:963,108,0
chrXIII	474399	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.33;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1367,147,0
chrXIII	474624	.	T	C	901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=0.371;QD=16.09;ReadPosRankSum=1.670;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:934,102,0
chrXIII	474632	.	T	C	949	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=16.36;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:982,105,0
chrXIII	474682	.	G	A	1121	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.98;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1154,123,0
chrXIII	474721	.	G	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.52;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1857,195,0
chrXIII	474893	.	G	A	1425	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.65;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1458,162,0
chrXIII	474938	.	C	T	1290	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.85;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1323,144,0
chrXIII	475024	.	G	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=19.36;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1543,162,0
chrXIII	475108	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3651;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=18.43;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1489,159,0
chrXIII	475126	.	G	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4404;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.17;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1414,150,0
chrXIII	475202	.	A	G	1475	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.35;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1508,165,0
chrXIII	475652	.	C	T	805	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;QD=23.68;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:90:838,90,0
chrXIII	475855	.	G	A	1787	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4337;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.15;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1820,198,0
chrXIII	476482	.	A	G	757	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=16.82;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,41:45:87:790,87,0
chrXIII	476503	.	G	A	982	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.25;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1015,108,0
chrXIII	476788	.	C	G	2071	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.01;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2104,228,0
chrXIII	476911	.	T	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.99;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1362,144,0
chrXIII	476980	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.56;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1617,177,0
chrXIII	476994	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.60;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1542,168,0
chrXIII	477051	.	T	C	1729	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.43;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1762,195,0
chrXIII	477184	.	A	G	1719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.316;QD=22.92;ReadPosRankSum=1.686;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1752,186,0
chrXIII	477223	.	G	A	1610	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.7066;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1643,180,0
chrXIII	477610	.	A	G	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.000;QD=20.23;ReadPosRankSum=1.683;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1469,162,0
chrXIII	477847	.	C	G	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.682;QD=21.66;ReadPosRankSum=1.682;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1571,174,0
chrXIII	477882	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.74;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1602,180,0
chrXIII	478014	.	A	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-2.710e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1069,114,0
chrXIII	478087	.	C	T	862	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.74;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:895,96,0
chrXIII	478297	.	T	C	956	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.38;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:989,108,0
chrXIII	478638	.	T	G	761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=4.260;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.505;QD=15.85;ReadPosRankSum=1.660;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:87:794,87,0
chrXIII	478673	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.19;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:982,105,0
chrXIII	479127	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.05;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:65:99:1141,123,0
chrXIII	479132	.	A	C	943	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=16.84;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:976,108,0
chrXIII	479146	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=17.12;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1026,114,0
chrXIII	479345	.	A	G	1170	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.46;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1203,135,0
chrXIII	479746	.	G	C	2366	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.94;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2399,267,0
chrXIII	480242	.	T	C	2769	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=21.63;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2802,309,0
chrXIII	480327	.	T	C	1752	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=22.75;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1785,192,0
chrXIII	480404	.	A	G	1480	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0031;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=0.176;QD=21.14;ReadPosRankSum=1.682;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1513,165,0
chrXIII	480430	.	G	A	1839	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=20.21;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1872,198,0
chrXIII	480440	.	A	C	1944	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1301;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.06;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1977,216,0
chrXIII	480495	.	C	G	2836	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.2540;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=16.78;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,168:169:99:2869,303,0
chrXIII	480496	.	G	A	2982	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=5.0427;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=17.64;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,169:169:99:3015,318,0
chrXIII	480545	.	G	A	3853.01	PASS	AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.3542;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=20.94;SB=-1.731e+03	GT:AD:DP:GQ:PL	1/1:0,183:184:99:3853,397,0
chrXIII	480549	.	G	A	3572.01	PASS	AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=20.30;SB=-1.575e+03	GT:AD:DP:GQ:PL	1/1:0,176:176:99:3572,373,0
chrXIII	480601	.	C	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=17.61;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1477,156,0
chrXIII	480711	.	C	A	792	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=18.42;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:825,87,0
chrXIII	480896	.	A	G	662	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=20.69;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:75:695,75,0
chrXIII	481004	.	T	G	244	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=16.27;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:30:277,30,0
chrXIII	481006	.	G	A	259	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=17.27;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:30:292,30,0
chrXIII	481103	.	G	A	170.06	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=5.86;SB=-3.207e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:21:203,21,0
chrXIII	481286	.	T	A	1093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;MQRankSum=0.033;QD=20.62;ReadPosRankSum=1.667;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1126,117,0
chrXIII	481385	.	T	C	2337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.980;QD=22.05;ReadPosRankSum=1.699;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2370,261,0
chrXIII	481412	.	A	T	2683	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=21.99;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2716,288,0
chrXIII	481511	.	C	T	2166	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.56;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2199,234,0
chrXIII	481534	.	G	A	2146	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=21.90;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2179,228,0
chrXIII	481556	.	G	C	2085	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=19.31;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,105:108:99:2118,231,0
chrXIII	481603	.	C	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.43;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1636,171,0
chrXIII	481610	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.07;MQ0=0;QD=15.48;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1395,150,0
chrXIII	481632	.	T	A	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=88;Dels=0.00;FS=9.490;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;MQRankSum=0.345;QD=15.64;ReadPosRankSum=2.874;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1409,156,0
chrXIII	481647	.	G	T	1601	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.62;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1634,180,0
chrXIII	481735	.	C	T	2759	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.22;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2792,303,0
chrXIII	481808	.	G	A	2690	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=22.61;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2723,288,0
chrXIII	481809	.	G	A	2705	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.92;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2738,288,0
chrXIII	481834	.	G	A	2537	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=23.93;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2570,270,0
chrXIII	482458	.	C	T	2789	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.46;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2822,297,0
chrXIII	482549	.	C	T	2458	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.3776;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.86;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2491,261,0
chrXIII	482700	.	C	A	1428	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.70;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1461,153,0
chrXIII	482769	.	G	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.75;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1702,183,0
chrXIII	482780	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.17;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1647,180,0
chrXIII	482805	.	T	A	1967	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.9404;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.28;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2000,207,0
chrXIII	482985	.	A	G	2133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=110;Dels=0.00;FS=4.731;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.405;QD=19.39;ReadPosRankSum=1.700;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,106:110:99:2166,240,0
chrXIII	483157	.	T	G	2797	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.11;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2830,309,0
chrXIII	483470	.	C	T	4446.01	PASS	AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=12.8471;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=21.58;SB=-2.564e+03	GT:AD:DP:GQ:PL	1/1:0,206:206:99:4446,469,0
chrXIII	483875	.	A	T	2222	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2255,237,0
chrXIII	483985	.	C	T	2210	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.4438;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.40;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2243,240,0
chrXIII	484290	.	C	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=16.93;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1455,162,0
chrXIII	484842	.	T	C	1474	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.19;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1507,168,0
chrXIII	485130	.	G	A	1175	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.92;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1208,129,0
chrXIII	485474	.	A	C	1291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.658;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.293;QD=19.86;ReadPosRankSum=1.679;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1324,147,0
chrXIII	485712	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.18;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1284,141,0
chrXIII	486339	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.49;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1333,144,0
chrXIII	486464	.	T	C	1228	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.93;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1261,138,0
chrXIII	486465	.	C	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.48;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1292,138,0
chrXIII	487177	.	T	C	1871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=90;Dels=0.00;FS=3.051;HaplotypeScore=7.4510;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=-0.452;QD=20.79;ReadPosRankSum=2.313;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1904,213,0
chrXIII	487393	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=23.11;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1443,156,0
chrXIII	487441	.	C	G	1337	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=23.46;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1370,147,0
chrXIII	487468	.	C	T	1354	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.57;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1387,147,0
chrXIII	487573	.	C	T	2209	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.50;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2242,237,0
chrXIII	487606	.	A	G	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=1.641;QD=23.45;ReadPosRankSum=1.687;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1815,201,0
chrXIII	487633	.	C	T	1796	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.73;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1829,201,0
chrXIII	487714	.	A	G	848	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=1.320;QD=20.19;ReadPosRankSum=1.650;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:96:881,96,0
chrXIII	487795	.	A	G	1131	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=18.24;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1164,129,0
chrXIII	487798	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=17.66;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1181,132,0
chrXIII	487831	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=17.93;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1378,150,0
chrXIII	489701	.	C	A	622	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;QD=16.37;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:655,69,0
chrXIII	489786	.	G	A	287	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;QD=7.18;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,38:40:33:320,33,0
chrXIII	489875	.	C	T	1507	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.08;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1540,159,0
chrXIII	490248	.	C	G	2115	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.36;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2148,231,0
chrXIII	490343	.	A	T	4758.01	PASS	AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=4.2913;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.65;SB=-2.179e+03	GT:AD:DP:GQ:PL	1/1:0,193:193:99:4758,510,0
chrXIII	490524	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.36;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1519,162,0
chrXIII	490598	.	A	G	2448	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.9625;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.88;SB=-1.320e+03	GT:AD:DP:GQ:PL	1/1:0,104:107:99:2481,270,0
chrXIII	490749	.	G	A	1703	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.92;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1736,183,0
chrXIII	490970	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.39;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1600,174,0
chrXIII	491108	.	T	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.23;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1163,129,0
chrXIII	491129	.	T	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=16.51;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1337,144,0
chrXIII	491195	.	G	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.69;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1491,159,0
chrXIII	491384	.	A	G	659	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:78:692,78,0
chrXIII	491444	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.69;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1161,120,0
chrXIII	491531	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.51;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1361,150,0
chrXIII	491569	.	G	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.89;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1349,147,0
chrXIII	491864	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.51;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1577,171,0
chrXIII	491919	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.94;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1437,150,0
chrXIII	491997	.	G	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.06;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1798,186,0
chrXIII	492202	.	G	A	2274	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2307,240,0
chrXIII	492323	.	T	G	1270	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.028;DP=77;Dels=0.00;FS=3.041;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.243;QD=16.49;ReadPosRankSum=2.385;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1303,144,0
chrXIII	492373	.	T	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.41;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1547,168,0
chrXIII	492378	.	G	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.16;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1451,159,0
chrXIII	492388	.	C	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=18.26;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1567,165,0
chrXIII	492566	.	T	C	1529	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9546;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.24;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1562,171,0
chrXIII	492720	.	T	C	2010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=97;Dels=0.00;FS=6.531;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.952;QD=20.72;ReadPosRankSum=2.374;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2043,222,0
chrXIII	492749	.	G	T	2342	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=22.96;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2375,255,0
chrXIII	492833	.	C	T	2133	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=24.52;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2166,225,0
chrXIII	493115	.	G	A	1895	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.40;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1928,207,0
chrXIII	493130	.	T	C	1748	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=18.80;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1781,201,0
chrXIII	493334	.	C	T	2441	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=9.5002;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.23;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2474,261,0
chrXIII	493442	.	C	T	1783	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.01;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1816,189,0
chrXIII	493797	.	A	G	2026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=109;Dels=0.00;FS=9.137;HaplotypeScore=10.4362;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.059;QD=18.59;ReadPosRankSum=2.356;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:2,103:109:99:2059,225,0
chrXIII	493832	.	G	A	1587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.355;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=1.110;QD=20.09;ReadPosRankSum=1.510;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1620,164,0
chrXIII	494172	.	G	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.02;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1584,165,0
chrXIII	494247	.	G	A	1688	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.40;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1721,183,0
chrXIII	494333	.	T	G	1621	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0311;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=17.62;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1654,183,0
chrXIII	494475	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.18;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1537,162,0
chrXIII	494582	.	C	T	940	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.08;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:973,105,0
chrXIII	494673	.	C	T	968	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=18.98;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1001,108,0
chrXIII	494734	.	A	G	869	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;MQRankSum=-0.391;QD=14.25;ReadPosRankSum=2.244;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:2,58:61:99:902,102,0
chrXIII	494735	.	G	A	915	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=15.00;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:948,105,0
chrXIII	494827	.	T	A	1537	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.40;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1570,165,0
chrXIII	494850	.	A	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7987;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.63;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1687,183,0
chrXIII	494957	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.638;QD=23.46;ReadPosRankSum=2.360;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1957,216,0
chrXIII	495304	.	G	A	2186	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.86;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,96:100:99:2219,231,0
chrXIII	495487	.	A	C	1881	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.22;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1914,213,0
chrXIII	495637	.	A	C	1565	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.15;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1598,177,0
chrXIII	496111	.	T	C	2187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;MQRankSum=-1.032;QD=21.44;ReadPosRankSum=1.697;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,98:102:99:2220,243,0
chrXIII	496303	.	C	T	2185	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.68;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2218,243,0
chrXIII	496310	.	T	G	2056	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.04;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2089,228,0
chrXIII	496501	.	C	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=15.28;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1271,132,0
chrXIII	496520	.	T	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=13.84;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1085,120,0
chrXIII	496537	.	A	T	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.123;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;MQRankSum=-1.377;QD=12.85;ReadPosRankSum=1.688;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1048,114,0
chrXIII	496551	.	C	T	1056	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=13.54;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1089,114,0
chrXIII	496565	.	A	G	966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=83;Dels=0.00;FS=7.112;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;MQRankSum=-0.380;QD=11.64;ReadPosRankSum=2.298;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:2,79:83:95:999,95,0
chrXIII	496640	.	T	G	1261	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.67;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1294,144,0
chrXIII	496721	.	G	A	1285	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=19.47;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1318,144,0
chrXIII	496739	.	C	T	1158	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.63;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1191,129,0
chrXIII	496955	.	A	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=18.21;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1071,114,0
chrXIII	497249	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.44;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1191,132,0
chrXIII	497270	.	A	G	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.987;DP=64;Dels=0.00;FS=6.960;HaplotypeScore=6.0203;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=0.637;QD=19.08;ReadPosRankSum=2.373;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1254,138,0
chrXIII	497366	.	G	C	947	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.21;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:980,111,0
chrXIII	497568	.	G	T	1472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.409;QD=19.63;ReadPosRankSum=-1.224;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1505,140,0
chrXIII	497778	.	G	C	1393	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.87;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1426,156,0
chrXIII	498101	.	G	A	947	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.21;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:980,105,0
chrXIII	498543	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.24;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1657,177,0
chrXIII	498573	.	T	C	1664	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=24.84;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1697,186,0
chrXIII	498745	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.14;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1537,162,0
chrXIII	499134	.	A	G	1476	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.43;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1509,165,0
chrXIII	499738	.	A	G	2376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.696;QD=22.21;ReadPosRankSum=1.667;SB=-1.386e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2409,264,0
chrXIII	499915	.	A	T	2438	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7247;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=19.98;SB=-1.545e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2471,258,0
chrXIII	499930	.	A	T	2532	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.75;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2565,282,0
chrXIII	500738	.	A	G	2039	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.69;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2072,228,0
chrXIII	500788	.	G	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=21.20;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1877,198,0
chrXIII	500943	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.56;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1274,141,0
chrXIII	501060	.	A	G	1791	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.6237;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.59;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1824,204,0
chrXIII	501084	.	T	C	1140	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=17.54;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1173,129,0
chrXIII	501090	.	C	T	1183	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.43;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1216,129,0
chrXIII	501121	.	C	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=16.90;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1182,129,0
chrXIII	501143	.	T	G	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=1.689;QD=17.57;ReadPosRankSum=1.647;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1456,162,0
chrXIII	501911	.	T	G	971	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.58;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1004,111,0
chrXIII	502051	.	C	T	2439	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.62;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2472,264,0
chrXIII	502120	.	C	T	4829.01	PASS	AC=2;AF=1.00;AN=2;DP=204;Dels=0.00;FS=0.000;HaplotypeScore=16.9259;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.67;SB=-1.858e+03	GT:AD:DP:GQ:PL	1/1:0,204:204:99:4829,513,0
chrXIII	502616	.	T	A	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.119;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.0457;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;MQRankSum=-0.203;QD=20.75;ReadPosRankSum=2.266;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1423,131,0
chrXIII	502640	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.540;QD=20.34;ReadPosRankSum=1.675;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1274,141,0
chrXIII	502704	.	C	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.82;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:99:1440,159,0
chrXIII	502787	.	G	A	1977	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=7.6316;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.73;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2010,213,0
chrXIII	502941	.	A	G	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=9.544;HaplotypeScore=5.4558;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=-1.304;QD=17.63;ReadPosRankSum=2.335;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:2,84:87:99:1567,171,0
chrXIII	502964	.	C	T	2199	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.99;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2232,237,0
chrXIII	503125	.	T	C	3051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=138;Dels=0.00;FS=4.043;HaplotypeScore=8.9684;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;MQRankSum=-0.822;QD=22.11;ReadPosRankSum=1.682;SB=-1.432e+03	GT:AD:DP:GQ:PL	1/1:1,136:138:99:3084,336,0
chrXIII	503212	.	C	T	2847	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=24.54;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2880,306,0
chrXIII	503284	.	C	T	2220	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=22.20;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2253,234,0
chrXIII	503379	.	C	T	2172	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;QD=21.29;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2205,237,0
chrXIII	503388	.	C	T	2171	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=22.61;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2204,240,0
chrXIII	503456	.	G	A	807	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=21.81;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:840,90,0
chrXIII	503612	.	A	T	720	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=0;QD=17.14;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:753,81,0
chrXIII	503630	.	C	A	687	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=20.8548;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=19.08;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:75:720,75,0
chrXIII	503664	.	C	A	450	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.13;MQ0=0;QD=15.00;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:51:483,51,0
chrXIII	503767	.	A	C	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=6.8322;MLEAC=2;MLEAF=1.00;MQ=29.28;MQ0=1;MQRankSum=-0.717;QD=1.07;ReadPosRankSum=-0.387;SB=1.24	GT:AD:DP:GQ:PL	1/1:7,5:13:6:45,6,0
chrXIII	503810	.	T	A	114.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=18.38;MQ0=21;MQRankSum=1.134;QD=3.45;ReadPosRankSum=1.635;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:21,12:33:35:144,0,35
chrXIII	504115	.	C	T	67.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.74;MQ0=14;MQRankSum=1.495;QD=3.19;ReadPosRankSum=-1.495;SB=-6.177e-03	GT:AD:DP:GQ:PL	0/1:8,12:21:38:97,0,38
chrXIII	504142	.	T	A	38.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DP=42;Dels=0.00;FS=29.760;HaplotypeScore=10.7869;MLEAC=1;MLEAF=0.500;MQ=30.20;MQ0=1;MQRankSum=0.817;QD=0.90;ReadPosRankSum=3.566;SB=-6.517e-03	GT:AD:DP:GQ:PL	0/1:37,5:42:65:68,0,65
chrXIII	504174	.	A	T	602	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=46.98;MQ0=0;QD=12.04;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:66:635,66,0
chrXIII	504283	.	G	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=24.58;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:1090,117,0
chrXIII	504337	.	G	A	1701	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=25.01;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1734,186,0
chrXIII	504435	.	A	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.75;MQ0=0;QD=20.37;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1907,201,0
chrXIII	504447	.	C	G	1858	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=20.42;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1891,210,0
chrXIII	504527	.	A	G	2187	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=22.32;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2220,243,0
chrXIII	504619	.	T	C	2433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.102;DP=115;Dels=0.00;FS=1.983;HaplotypeScore=5.4093;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;MQRankSum=0.085;QD=21.16;ReadPosRankSum=2.579;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:4,110:115:99:2466,251,0
chrXIII	504623	.	A	G	2461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.324;DP=110;Dels=0.00;FS=7.628;HaplotypeScore=5.6701;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;MQRankSum=1.085;QD=22.37;ReadPosRankSum=1.085;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:2,108:110:99:2494,276,0
chrXIII	504746	.	A	C	2051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=0.778;QD=20.93;ReadPosRankSum=1.626;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2084,225,0
chrXIII	504775	.	A	T	2348	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=21.15;SB=-1.256e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2381,252,0
chrXIII	504813	.	G	A	2209	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=20.64;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2242,234,0
chrXIII	504829	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=16.99;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1851,195,0
chrXIII	504848	.	C	G	1641	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=49.42;MQ0=0;QD=16.09;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,98:102:99:1674,183,0
chrXIII	504878	.	C	T	1386	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=16.31;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1419,147,0
chrXIII	504891	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.32;MQ0=0;QD=14.57;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1301,144,0
chrXIII	505036	.	G	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.63;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1505,159,0
chrXIII	505100	.	C	A	2131	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.91;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2164,228,0
chrXIII	505362	.	G	C	1958	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=13.7463;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.05;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,87:93:99:1991,222,0
chrXIII	505690	.	G	A	1626	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.27;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1659,177,0
chrXIII	505942	.	T	C	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.836;DP=80;Dels=0.00;FS=6.180;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;MQRankSum=0.025;QD=17.67;ReadPosRankSum=2.912;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:3,77:80:99:1447,159,0
chrXIII	505945	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=3.054;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=0.827;QD=17.23;ReadPosRankSum=2.360;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1446,156,0
chrXIII	506166	.	G	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.72;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1649,180,0
chrXIII	506223	.	T	C	2276	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.99;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2309,252,0
chrXIII	506403	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.22;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1589,171,0
chrXIII	506583	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.84;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1358,150,0
chrXIII	506838	.	T	C	1081	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.6524;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.79;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1114,120,0
chrXIII	506964	.	G	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.04;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1674,180,0
chrXIII	506980	.	A	G	1470	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.34;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1503,165,0
chrXIII	507039	.	G	C	1806	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.25;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1839,201,0
chrXIII	507297	.	C	G	2719	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=19.85;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2752,303,0
chrXIII	507637	.	A	G	1839	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2159;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.99;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1872,204,0
chrXIII	507712	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.97;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1513,165,0
chrXIII	507752	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.54;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1278,138,0
chrXIII	508047	.	G	T	238.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.475;DP=66;Dels=0.00;FS=131.985;HaplotypeScore=22.1539;MLEAC=1;MLEAF=0.500;MQ=55.29;MQ0=0;MQRankSum=-0.891;QD=3.61;ReadPosRankSum=-4.716;SB=-3.015e+00	GT:AD:DP:GQ:PL	0/1:37,29:66:99:268,0,505
chrXIII	508389	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.63;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1828,192,0
chrXIII	508549	.	T	C	933	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.28;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:966,108,0
chrXIII	508768	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.8269;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.61;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1700,183,0
chrXIII	508918	.	T	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.08;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1277,144,0
chrXIII	509532	.	C	T	963	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.26;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:996,108,0
chrXIII	510091	.	G	A	1857	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.4878;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.87;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1890,198,0
chrXIII	510373	.	A	T	1321	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=20.97;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1354,141,0
chrXIII	510615	.	A	C	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.153;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=-0.559;QD=19.22;ReadPosRankSum=1.676;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1244,138,0
chrXIII	510989	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.74;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1251,138,0
chrXIII	511205	.	G	A	2455	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=15.6145;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.12;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:0,119:122:99:2488,267,0
chrXIII	511256	.	A	G	2344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=97;Dels=0.00;FS=4.816;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=60.10;MQ0=0;MQRankSum=-0.804;QD=24.16;ReadPosRankSum=1.696;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2377,261,0
chrXIII	511679	.	A	T	671	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.17;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:72:704,72,0
chrXIII	511826	.	G	A	574	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=19.13;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,29:30:72:607,72,0
chrXIII	511892	.	T	A	557	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=23.21;SB=-6.523e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:63:590,63,0
chrXIII	511943	.	T	C	183.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;MQRankSum=-1.240;QD=13.07;ReadPosRankSum=1.488;SB=-3.987e-02	GT:AD:DP:GQ:PL	1/1:1,13:14:24:216,24,0
chrXIII	511953	.	G	A	184.03	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=10.83;SB=-4.069e-02	GT:AD:DP:GQ:PL	1/1:0,16:17:24:217,24,0
chrXIII	512124	.	T	C	723	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.08;MQ0=0;QD=19.03;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:756,84,0
chrXIII	512151	.	T	C	656	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=17.73;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:78:689,78,0
chrXIII	512161	.	C	T	606	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=18.94;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:72:639,72,0
chrXIII	512189	.	G	A	814	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=19.85;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:847,90,0
chrXIII	512213	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=21.50;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1108,123,0
chrXIII	512254	.	C	A	878	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=17.56;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:911,99,0
chrXIII	512272	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=17.24;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1033,114,0
chrXIII	512330	.	C	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=19.45;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1278,135,0
chrXIII	512343	.	G	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=17.71;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1255,138,0
chrXIII	512366	.	A	G	1022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-0.412;QD=16.22;ReadPosRankSum=1.622;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1055,117,0
chrXIII	512368	.	A	G	963	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.65;MQ0=0;QD=15.79;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:996,111,0
chrXIII	512447	.	A	T	1316	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=19.94;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1349,141,0
chrXIII	512449	.	G	A	1228	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4453;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=19.19;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1261,141,0
chrXIII	512483	.	A	G	1144	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=0;QD=18.75;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1177,132,0
chrXIII	512520	.	A	G	544	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=16.00;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:577,66,0
chrXIII	512540	.	G	A	600	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=19.8302;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=0;QD=18.18;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:69:633,69,0
chrXIII	512558	.	A	G	426	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=31.76;MQ0=0;QD=16.38;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:51:459,51,0
chrXIII	512693	.	G	C	2170	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=22.37;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2203,246,0
chrXIII	512725	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=3.554;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;MQRankSum=0.306;QD=21.45;ReadPosRankSum=1.681;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1513,165,0
chrXIII	512809	.	G	A	832	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=18.49;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:865,90,0
chrXIII	512863	.	A	G	38.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.455;DP=78;Dels=0.00;FS=0.963;HaplotypeScore=3.3760;MLEAC=1;MLEAF=0.500;MQ=35.37;MQ0=0;MQRankSum=0.536;QD=0.49;ReadPosRankSum=-6.543;SB=-4.170e+02	GT:AD:DP:GQ:PL	0/1:27,51:78:68:68,0,371
chrXIII	512964	.	A	G	1584	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=21.41;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1617,180,0
chrXIII	513020	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=23.26;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1568,174,0
chrXIII	513049	.	C	T	1183	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=21.12;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1216,129,0
chrXIII	513096	.	T	C	679	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=17.87;SB=-1.480e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:78:712,78,0
chrXIII	513097	.	T	C	642	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=43.94;MQ0=0;QD=16.89;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:75:675,75,0
chrXIII	513130	.	T	C	526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.67;MQ0=0;MQRankSum=-1.733;QD=15.94;ReadPosRankSum=1.625;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:63:559,63,0
chrXIII	513160	.	C	T	339	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=12.56;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:42:372,42,0
chrXIII	513161	.	A	G	331	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.29;MQ0=0;MQRankSum=0.743;QD=11.82;ReadPosRankSum=1.609;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:1,27:28:42:364,42,0
chrXIII	513198	.	T	C	490	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.40;MQ0=0;QD=15.81;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:523,57,0
chrXIII	513217	.	C	T	489	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=11.64;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:57:522,57,0
chrXIII	513259	.	C	A	1192	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=17.03;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1225,132,0
chrXIII	513285	.	G	A	1457	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=17.77;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1490,156,0
chrXIII	513345	.	T	C	1133	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=13.49;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1166,126,0
chrXIII	513350	.	G	A	1196	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.55;MQ0=0;QD=14.95;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1229,132,0
chrXIII	513352	.	G	T	1225	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.30;MQ0=0;QD=15.51;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1258,132,0
chrXIII	513381	.	T	C	919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;MQRankSum=-0.481;QD=12.76;ReadPosRankSum=1.684;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:952,108,0
chrXIII	513415	.	G	A	979	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.80;MQ0=0;QD=15.30;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1012,108,0
chrXIII	513420	.	A	T	1000	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.274;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;MQRankSum=0.459;QD=14.71;ReadPosRankSum=1.681;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1033,111,0
chrXIII	513425	.	A	T	1055	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=15.07;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1088,114,0
chrXIII	513778	.	C	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=18.28;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1587,177,0
chrXIII	513871	.	C	G	747	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.15;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:87:780,87,0
chrXIII	514146	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=21.4651;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.11;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1237,132,0
chrXIII	514194	.	A	G	998	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1031,114,0
chrXIII	514342	.	C	T	492	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=9.2648;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=13.30;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:57:525,57,0
chrXIII	515220	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.69;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1508,162,0
chrXIII	515325	.	T	C	877	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.88;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:910,99,0
chrXIII	515375	.	G	A	866	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.62;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:899,96,0
chrXIII	516109	.	G	A	1350	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.77;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1383,150,0
chrXIII	516134	.	A	G	1355	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.53;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1388,159,0
chrXIII	517277	.	G	A	2197	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.62;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2230,240,0
chrXIII	526917	.	C	T	1682	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.03;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1715,186,0
chrXIII	530525	.	T	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.70;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1327,147,0
chrXIII	531867	.	A	G	3308.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.13;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,141:143:99:3308,363,0
chrXIII	532942	.	A	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.95;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1387,150,0
chrXIII	533769	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.42;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1725,189,0
chrXIII	534586	.	T	A	1888	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.45;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1921,201,0
chrXIII	534609	.	G	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.97;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1903,201,0
chrXIII	534845	.	G	A	1697	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.93;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1730,183,0
chrXIII	535310	.	G	A	2373	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2728;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.19;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2406,261,0
chrXIII	535721	.	T	C	812	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=8.3668;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=15.92;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,50:50:93:845,93,0
chrXIII	535737	.	A	C	666	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.211;QD=16.24;ReadPosRankSum=1.648;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:1,40:41:81:699,81,0
chrXIII	535756	.	A	C	637	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.20;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:72:670,72,0
chrXIII	535992	.	T	G	102.26	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.30;SB=-8.114e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:135,15,0
chrXIII	536440	.	G	A	981	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=14.64;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1014,108,0
chrXIII	536833	.	C	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=18.05;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1477,159,0
chrXIII	536835	.	G	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.35;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1483,156,0
chrXIII	536848	.	T	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=17.14;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1370,144,0
chrXIII	536887	.	A	C	978	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=-0.812;QD=15.28;ReadPosRankSum=1.678;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1011,111,0
chrXIII	536982	.	C	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.00;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1153,126,0
chrXIII	537691	.	C	G	1751	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.74;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1784,192,0
chrXIII	537942	.	G	A	1908	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.56;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1941,204,0
chrXIII	538176	.	T	C	1607	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.96;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1640,183,0
chrXIII	538521	.	A	G	1283	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=20.69;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1316,141,0
chrXIII	538619	.	A	T	218	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=52.1914;MLEAC=2;MLEAF=1.00;MQ=32.15;MQ0=0;QD=5.07;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:33:251,33,0
chrXIII	538680	.	C	T	823	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=13.95;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:90:856,90,0
chrXIII	538772	.	A	G	1212	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.26;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1245,138,0
chrXIII	539541	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.060;QD=20.40;ReadPosRankSum=1.681;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1400,156,0
chrXIII	539622	.	A	G	1651	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1684,183,0
chrXIII	539804	.	T	G	1384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=15.7990;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.561;QD=16.88;ReadPosRankSum=1.604;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1417,159,0
chrXIII	539865	.	A	G	724	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=12.93;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:81:757,81,0
chrXIII	540088	.	C	A	2228	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7786;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.25;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2261,246,0
chrXIII	540287	.	G	T	766	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.3240;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.15;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:799,84,0
chrXIII	540307	.	T	C	851	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.91;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:96:884,96,0
chrXIII	540423	.	G	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.11;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1363,150,0
chrXIII	540446	.	A	T	1711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=73;Dels=0.00;FS=3.050;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.166;QD=23.44;ReadPosRankSum=2.382;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1744,183,0
chrXIII	540526	.	C	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.84;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1649,177,0
chrXIII	540598	.	G	A	960	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.33;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:993,102,0
chrXIII	540664	.	A	T	791	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.28;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:824,87,0
chrXIII	540897	.	C	T	1487	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.57;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1520,165,0
chrXIII	541041	.	C	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.07;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1082,114,0
chrXIII	541095	.	T	A	1161	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.470;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=1.627;QD=17.33;ReadPosRankSum=1.680;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1194,135,0
chrXIII	541246	.	A	G	1006	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.63;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1039,117,0
chrXIII	541445	.	C	A	160.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.335;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=86.0133;MLEAC=1;MLEAF=0.500;MQ=37.48;MQ0=0;MQRankSum=0.792;QD=1.76;ReadPosRankSum=-4.892;SB=-2.320e+02	GT:AD:DP:GQ:PL	0/1:60,30:91:99:190,0,139
chrXIII	541446	.	A	G	94.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.442;DP=88;Dels=0.00;FS=29.137;HaplotypeScore=73.2620;MLEAC=1;MLEAF=0.500;MQ=36.47;MQ0=0;MQRankSum=0.670;QD=1.07;ReadPosRankSum=-3.483;SB=-1.501e+01	GT:AD:DP:GQ:PL	0/1:61,27:88:99:124,0,231
chrXIII	541447	.	T	C	123.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=73.2620;MLEAC=1;MLEAF=0.500;MQ=36.11;MQ0=0;MQRankSum=-1.099;QD=1.41;ReadPosRankSum=-5.466;SB=-2.150e+02	GT:AD:DP:GQ:PL	0/1:61,26:87:99:153,0,151
chrXIII	541449	.	G	A	129.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.905;DP=86;Dels=0.00;FS=0.913;HaplotypeScore=71.6847;MLEAC=1;MLEAF=0.500;MQ=35.74;MQ0=0;MQRankSum=-0.900;QD=1.50;ReadPosRankSum=-6.070;SB=-2.040e+02	GT:AD:DP:GQ:PL	0/1:62,24:86:99:159,0,141
chrXIII	541450	.	T	C	121.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;DP=87;Dels=0.00;FS=0.914;HaplotypeScore=71.6847;MLEAC=1;MLEAF=0.500;MQ=36.11;MQ0=0;MQRankSum=-0.888;QD=1.39;ReadPosRankSum=-5.969;SB=-1.930e+02	GT:AD:DP:GQ:PL	0/1:63,24:87:99:151,0,175
chrXIII	541511	.	T	C	1211	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=13.61;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1244,138,0
chrXIII	541716	.	C	T	1971	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.15;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2004,213,0
chrXIII	541747	.	C	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9072;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.99;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1381,147,0
chrXIII	541852	.	T	C	2058	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.049;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-0.663;QD=21.89;ReadPosRankSum=1.695;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2091,228,0
chrXIII	542119	.	T	A	1472	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.44;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1505,165,0
chrXIII	542277	.	C	T	1085	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=14.28;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1118,120,0
chrXIII	542490	.	C	T	1755	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0619;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1788,189,0
chrXIII	542926	.	T	A	3002	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.45;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3035,324,0
chrXIII	543143	.	T	C	2262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.108;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.118;QD=21.96;ReadPosRankSum=1.631;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2295,255,0
chrXIII	543392	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.30;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1906,210,0
chrXIII	543500	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1514;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.89;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1979,216,0
chrXIII	544007	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.06;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1339,144,0
chrXIII	544466	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.65;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1582,177,0
chrXIII	544697	.	G	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.0435;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.27;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1674,180,0
chrXIII	544984	.	T	C	1405	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1438,159,0
chrXIII	545060	.	G	C	2307	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.60;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2340,258,0
chrXIII	545488	.	T	C	2120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=100;Dels=0.00;FS=6.608;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=1.440;QD=21.20;ReadPosRankSum=2.351;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:2,98:100:99:2153,237,0
chrXIII	545520	.	C	T	1832	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=12.0331;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.55;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1865,198,0
chrXIII	545586	.	A	G	1680	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.66;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1713,183,0
chrXIII	545622	.	G	C	1244	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.08;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1277,141,0
chrXIII	545665	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=20.73;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1256,135,0
chrXIII	545686	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.76;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1535,171,0
chrXIII	545809	.	T	C	1922	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1955,210,0
chrXIII	545904	.	C	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.28;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1556,171,0
chrXIII	545936	.	A	T	2133	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.8602;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.55;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2166,234,0
chrXIII	545985	.	G	A	2519	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.29;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2552,279,0
chrXIII	546319	.	T	C	1866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=5.195;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.208;QD=21.45;ReadPosRankSum=1.571;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1899,216,0
chrXIII	547278	.	A	G	2360	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.0946;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.85;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2393,264,0
chrXIII	547440	.	T	A	4157.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=8.7190;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.50;SB=-1.476e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:4157,433,0
chrXIII	547482	.	C	T	2362	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.86;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2395,255,0
chrXIII	547537	.	C	T	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.664;HaplotypeScore=9.3218;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=0.950;QD=20.22;ReadPosRankSum=1.136;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1934,204,0
chrXIII	547540	.	T	C	1990	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=4.260;HaplotypeScore=9.5198;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=-0.433;QD=20.73;ReadPosRankSum=0.794;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2023,225,0
chrXIII	547652	.	G	A	2759	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.8309;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.18;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2792,291,0
chrXIII	547694	.	C	T	2273	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.26;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2306,240,0
chrXIII	547731	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9329;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.86;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1694,177,0
chrXIII	548019	.	G	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.03;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1461,162,0
chrXIII	548115	.	G	A	1230	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.60;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1263,132,0
chrXIII	548622	.	T	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.58;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1259,135,0
chrXIII	548625	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.55;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1174,129,0
chrXIII	548863	.	T	C	540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.2299;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.551;QD=12.27;ReadPosRankSum=1.654;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:63:573,63,0
chrXIII	548999	.	G	C	812	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=14.50;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:93:845,93,0
chrXIII	549187	.	C	T	1358	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.68;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1391,150,0
chrXIII	549556	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.114;QD=19.13;ReadPosRankSum=1.691;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1640,177,0
chrXIII	549635	.	T	G	1763	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.99;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1796,195,0
chrXIII	549691	.	T	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.76;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1258,135,0
chrXIII	549772	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-1.492;QD=21.35;ReadPosRankSum=1.588;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1570,177,0
chrXIII	550458	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.30;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2137,231,0
chrXIII	550984	.	T	C	1839	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.261;QD=21.64;ReadPosRankSum=2.218;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1872,201,0
chrXIII	551044	.	T	C	1352	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.81;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1385,150,0
chrXIII	551083	.	G	A	1599	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.99;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1632,171,0
chrXIII	551093	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.0130;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.85;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:1979,216,0
chrXIII	551147	.	G	A	2510	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.6209;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.68;SB=-1.544e+03	GT:AD:DP:GQ:PL	1/1:0,140:142:99:2543,270,0
chrXIII	551159	.	C	T	2572	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=17.86;SB=-1.670e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:2605,282,0
chrXIII	551554	.	T	G	2457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=117;Dels=0.00;FS=3.606;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-0.962;QD=21.00;ReadPosRankSum=1.703;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2490,273,0
chrXIII	551662	.	A	C	1805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.925;HaplotypeScore=9.5914;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.943;QD=22.85;ReadPosRankSum=1.688;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1838,204,0
chrXIII	552004	.	G	A	1837	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.68;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1870,198,0
chrXIII	552227	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.79;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1297,141,0
chrXIII	552305	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.63;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1504,156,0
chrXIII	552363	.	C	G	1440	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=16.74;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1473,162,0
chrXIII	552364	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.46;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1552,162,0
chrXIII	552615	.	T	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.51;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1594,177,0
chrXIII	553020	.	T	A	3137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.218;QD=24.13;ReadPosRankSum=1.705;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:1,129:130:99:3170,336,0
chrXIII	553194	.	C	G	2825	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.90;SB=-1.528e+03	GT:AD:DP:GQ:PL	1/1:0,127:129:99:2858,306,0
chrXIII	553241	.	A	C	2682	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.12;SB=-1.494e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2715,300,0
chrXIII	553315	.	C	T	2278	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=21.49;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2311,237,0
chrXIII	554314	.	A	G	2585	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=21.19;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2618,291,0
chrXIII	554323	.	G	A	2438	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=20.32;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2471,264,0
chrXIII	554339	.	C	T	2209	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=19.72;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2242,240,0
chrXIII	554399	.	A	G	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.964;DP=93;Dels=0.00;FS=10.840;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;MQRankSum=-3.010;QD=16.49;ReadPosRankSum=4.074;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:6,87:93:99:1567,171,0
chrXIII	554401	.	T	C	1580	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=7.836;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;MQRankSum=-1.386;QD=17.95;ReadPosRankSum=2.394;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1613,174,0
chrXIII	554421	.	T	G	1973	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.72;MQ0=0;QD=18.10;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2006,213,0
chrXIII	554447	.	C	T	2227	SnpCluster	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7106;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=17.26;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,127:129:99:2260,234,0
chrXIII	554456	.	C	T	1863	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.959;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=5.3315;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;MQRankSum=0.373;QD=14.11;ReadPosRankSum=0.586;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,130:131:99:1896,216,0
chrXIII	554457	.	T	C	1825	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.679;DP=131;Dels=0.01;FS=0.000;HaplotypeScore=18.9836;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-0.826;QD=13.93;ReadPosRankSum=0.187;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,129:130:99:1858,213,0
chrXIII	554514	.	G	C	2122	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.54;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2155,240,0
chrXIII	554580	.	T	C	1968	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=19.88;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2001,219,0
chrXIII	557335	.	A	G	2835	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.64;SB=-1.611e+03	GT:AD:DP:GQ:PL	1/1:0,129:131:99:2868,303,0
chrXIII	557358	.	G	A	3427.01	PASS	AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=5.9674;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=20.64;SB=-1.821e+03	GT:AD:DP:GQ:PL	1/1:0,166:166:99:3427,372,0
chrXIII	557425	.	G	A	5329.01	PASS	AC=2;AF=1.00;AN=2;DP=222;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=24.00;SB=-2.298e+03	GT:AD:DP:GQ:PL	1/1:0,222:222:99:5329,582,0
chrXIII	557458	.	C	T	5854.01	PASS	AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=11.5496;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.29;SB=-1.914e+03	GT:AD:DP:GQ:PL	1/1:0,240:241:99:5854,619,0
chrXIII	558791	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.41;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1176,123,0
chrXIII	559180	.	A	G	971	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.68;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1004,108,0
chrXIII	559312	.	A	C	1058	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=3.388;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.072;QD=22.04;ReadPosRankSum=1.660;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1091,104,0
chrXIII	559619	.	G	A	734	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=17.90;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:767,81,0
chrXIII	562752	.	A	G	1103	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.43;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1136,126,0
chrXIII	564438	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.00;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1321,135,0
chrXIII	564933	.	A	G	2031	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.5200;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2064,225,0
chrXIII	565188	.	G	T	997	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.49;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1030,108,0
chrXIII	565315	.	T	A	1925	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.15;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1958,207,0
chrXIII	565352	.	C	T	1785	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.40;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1818,201,0
chrXIII	565610	.	G	A	1691	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9237;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.25;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1724,180,0
chrXIII	566017	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.55;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1225,138,0
chrXIII	566147	.	G	A	1451	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.32;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1484,153,0
chrXIII	566498	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.19;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1559,165,0
chrXIII	566527	.	T	A	1562	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=20.03;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1595,168,0
chrXIII	566560	.	C	T	1887	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=19.86;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1920,213,0
chrXIII	566650	.	G	A	2417	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.6702;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.02;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2450,252,0
chrXIII	566965	.	A	G	1698	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.52;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1731,186,0
chrXIII	566975	.	T	C	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.933;QD=18.94;ReadPosRankSum=1.688;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1529,168,0
chrXIII	567163	.	A	G	2102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=97;Dels=0.00;FS=2.712;HaplotypeScore=6.5407;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=-1.594;QD=21.67;ReadPosRankSum=1.776;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:2,94:97:99:2135,234,0
chrXIII	568072	.	T	A	2338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=110;Dels=0.00;FS=4.000;HaplotypeScore=11.3262;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.700;QD=21.25;ReadPosRankSum=1.700;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2371,252,0
chrXIII	568220	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=21.57;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1284,132,0
chrXIII	568443	.	G	A	2972	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=10.3559;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.59;SB=-1.647e+03	GT:AD:DP:GQ:PL	1/1:0,122:126:99:3005,312,0
chrXIII	568527	.	G	A	2109	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.43;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2142,225,0
chrXIII	568577	.	A	G	1812	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=19.28;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1845,204,0
chrXIII	568585	.	A	G	1744	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.38;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1777,198,0
chrXIII	571267	.	G	A	98.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.686;DP=119;Dels=0.01;FS=113.001;HaplotypeScore=12.9168;MLEAC=1;MLEAF=0.500;MQ=57.44;MQ0=0;MQRankSum=1.675;QD=0.82;ReadPosRankSum=-6.205;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,34:118:99:128,0,410
chrXIII	572253	.	G	A	1853	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.8838;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.80;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1886,201,0
chrXIII	572476	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=20.90;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1642,180,0
chrXIII	572646	.	C	T	1666	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=19.37;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1699,189,0
chrXIII	572747	.	G	C	2770	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=23.47;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2803,303,0
chrXIII	572794	.	T	A	2393	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.81;SB=-1.445e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2426,252,0
chrXIII	572799	.	A	G	2158	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.44;SB=-1.377e+03	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2191,237,0
chrXIII	572965	.	T	C	2249	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.36;MQ0=0;QD=21.02;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2282,255,0
chrXIII	572971	.	A	T	1888	SnpCluster	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;QD=18.15;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1921,219,0
chrXIII	572972	.	T	C	1767	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.488;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.37;MQ0=0;MQRankSum=-1.199;QD=16.99;ReadPosRankSum=1.699;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1800,213,0
chrXIII	572974	.	C	A	1882	SnpCluster	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.38;MQ0=0;QD=18.82;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1915,219,0
chrXIII	572995	.	C	T	2661	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=19.86;SB=-1.441e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2694,285,0
chrXIII	573026	.	T	A	2579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=139;Dels=0.00;FS=2.991;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;MQRankSum=-0.876;QD=18.55;ReadPosRankSum=2.397;SB=-1.794e+03	GT:AD:DP:GQ:PL	1/1:2,137:139:99:2612,276,0
chrXIII	573027	.	C	T	2519	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.01;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.99;SB=-1.663e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2552,279,0
chrXIII	573111	.	T	G	3878.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=0.097;QD=23.79;ReadPosRankSum=1.711;SB=-1.591e+03	GT:AD:DP:GQ:PL	1/1:2,160:163:99:3878,426,0
chrXIII	574518	.	T	C	1594	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.571;QD=18.53;ReadPosRankSum=1.652;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1627,180,0
chrXIII	574666	.	A	G	2786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=3.739;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.606;QD=22.11;ReadPosRankSum=1.704;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:1,123:126:99:2819,306,0
chrXIII	576142	.	C	T	1811	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.22;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1844,198,0
chrXIII	577667	.	G	A	893	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=15.95;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:926,96,0
chrXIII	577824	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.62;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1277,138,0
chrXIII	579159	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.378;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.140;QD=19.97;ReadPosRankSum=1.592;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1511,165,0
chrXIII	579347	.	T	C	1420	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.52;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1453,156,0
chrXIII	579452	.	T	C	2024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=86;Dels=0.00;FS=2.828;HaplotypeScore=9.5989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.845;QD=23.53;ReadPosRankSum=2.364;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:2057,225,0
chrXIII	579707	.	A	G	1956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.627;DP=100;Dels=0.00;FS=5.963;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-1.293;QD=19.56;ReadPosRankSum=2.889;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:3,97:100:99:1989,213,0
chrXIII	579968	.	T	C	1877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=3.956;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.075;QD=20.40;ReadPosRankSum=1.694;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1910,213,0
chrXIII	580121	.	A	G	1837	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;DP=88;Dels=0.00;FS=17.356;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.355;QD=20.87;ReadPosRankSum=3.293;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:4,83:88:99:1870,201,0
chrXIII	580721	.	G	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.77;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1159,126,0
chrXIII	580883	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.242;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.956;QD=17.86;ReadPosRankSum=2.276;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1301,147,0
chrXIII	581966	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.61;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1367,147,0
chrXIII	582869	.	A	G	1769	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.91;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1802,195,0
chrXIII	584328	.	C	T	2008	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.82;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2041,219,0
chrXIII	585609	.	A	G	2712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=3.476;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.262;QD=22.79;ReadPosRankSum=1.703;SB=-1.370e+03	GT:AD:DP:GQ:PL	1/1:1,117:119:99:2745,309,0
chrXIII	585807	.	A	T	1464	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.019;QD=21.53;ReadPosRankSum=0.764;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1497,159,0
chrXIII	585859	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1660,180,0
chrXIII	585987	.	A	G	2239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=101;Dels=0.00;FS=2.926;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.137;QD=22.17;ReadPosRankSum=2.400;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:2,98:101:99:2272,249,0
chrXIII	586081	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.43;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1864,195,0
chrXIII	586147	.	C	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=22.03;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1729,192,0
chrXIII	586462	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=22.20;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1232,129,0
chrXIII	586528	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=5.643;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.105;QD=20.05;ReadPosRankSum=1.680;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1356,147,0
chrXIII	586557	.	G	T	1676	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.69;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1709,183,0
chrXIII	586728	.	C	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=20.46;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1404,147,0
chrXIII	586744	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.73;MQ0=0;QD=20.12;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1421,150,0
chrXIII	586753	.	T	C	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=4.014;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.95;MQ0=0;MQRankSum=-0.412;QD=19.35;ReadPosRankSum=1.677;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1252,135,0
chrXIII	586759	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.917;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-1.331;QD=17.32;ReadPosRankSum=1.632;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1228,135,0
chrXIII	586795	.	T	G	1014	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.13;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1047,114,0
chrXIII	587075	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.21;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1495,156,0
chrXIII	587134	.	C	T	1362	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=26.71;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1395,147,0
chrXIII	587600	.	A	G	645	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=15.36;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:75:678,75,0
chrXIII	587668	.	T	C	113.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=9;Dels=0.00;FS=9.542;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.751;QD=12.59;ReadPosRankSum=-0.751;SB=-3.146e+00	GT:AD:DP:GQ:PL	0/1:1,8:9:9:143,0,9
chrXIII	587939	.	A	G	1332	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.62;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1365,147,0
chrXIII	588594	.	C	T	86.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.778;DP=106;Dels=0.00;FS=0.771;HaplotypeScore=47.2645;MLEAC=1;MLEAF=0.500;MQ=33.46;MQ0=1;MQRankSum=-2.337;QD=0.81;ReadPosRankSum=-1.210;SB=-2.510e+02	GT:AD:DP:GQ:PL	0/1:68,38:106:99:116,0,677
chrXIII	588597	.	T	C	617.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.885;DP=107;Dels=0.00;FS=2.569;HaplotypeScore=55.7591;MLEAC=1;MLEAF=0.500;MQ=32.91;MQ0=2;MQRankSum=1.815;QD=5.77;ReadPosRankSum=0.947;SB=-5.500e+02	GT:AD:DP:GQ:PL	0/1:51,56:107:99:647,0,146
chrXIII	588606	.	C	T	786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;DP=108;Dels=0.00;FS=1.378;HaplotypeScore=46.6149;MLEAC=2;MLEAF=1.00;MQ=34.05;MQ0=2;MQRankSum=3.039;QD=7.28;ReadPosRankSum=0.761;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:11,96:108:66:819,66,0
chrXIII	588609	.	C	T	532.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.910;DP=112;Dels=0.00;FS=3.532;HaplotypeScore=186.9273;MLEAC=1;MLEAF=0.500;MQ=36.61;MQ0=2;MQRankSum=-0.156;QD=4.75;ReadPosRankSum=-0.629;SB=-5.140e+02	GT:AD:DP:GQ:PL	0/1:59,53:112:80:562,0,80
chrXIII	588618	.	T	C	320.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.219;DP=106;Dels=0.01;FS=2.630;HaplotypeScore=202.3349;MLEAC=1;MLEAF=0.500;MQ=37.00;MQ0=2;MQRankSum=-0.935;QD=3.02;ReadPosRankSum=0.731;SB=-3.570e+02	GT:AD:DP:GQ:PL	0/1:66,39:105:99:350,0,465
chrXIII	588630	.	T	C	129.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.707;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=86.5804;MLEAC=1;MLEAF=0.500;MQ=38.96;MQ0=2;MQRankSum=-1.495;QD=1.25;ReadPosRankSum=-0.324;SB=-2.730e+02	GT:AD:DP:GQ:PL	0/1:69,34:103:99:159,0,651
chrXIII	588642	.	T	C	60.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.135;DP=110;Dels=0.00;FS=2.078;HaplotypeScore=48.6488;MLEAC=1;MLEAF=0.500;MQ=42.44;MQ0=2;MQRankSum=-2.226;QD=0.55;ReadPosRankSum=1.203;SB=-3.901e+01	GT:AD:DP:GQ:PL	0/1:90,20:110:90:90,0,828
chrXIII	589062	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=65;Dels=0.00;FS=2.442;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=0.707;QD=21.29;ReadPosRankSum=2.316;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:4,61:65:99:1417,131,0
chrXIII	589109	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.67;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1393,147,0
chrXIII	589236	.	T	C	801	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.02;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:90:834,90,0
chrXIII	589680	.	C	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1760,189,0
chrXIII	589881	.	A	C	1244	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1277,141,0
chrXIII	590016	.	A	G	3358.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.249;DP=147;Dels=0.00;FS=7.126;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.162;QD=22.84;ReadPosRankSum=2.416;SB=-1.483e+03	GT:AD:DP:GQ:PL	1/1:2,145:147:99:3358,366,0
chrXIII	590486	.	T	C	1508	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.32;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1541,162,0
chrXIII	590865	.	A	G	983	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.87;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1016,111,0
chrXIII	590967	.	C	T	1132	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.10;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1165,123,0
chrXIII	591086	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.40;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1430,153,0
chrXIII	591930	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.29;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1920,207,0
chrXIII	592765	.	A	G	290	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.3404;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=11.15;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:36:323,36,0
chrXIII	593048	.	C	T	767	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=27.39;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:84:800,84,0
chrXIII	593072	.	T	C	811	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=24.58;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:93:844,93,0
chrXIII	593277	.	T	A	1643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.791;HaplotypeScore=5.3974;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.066;QD=20.80;ReadPosRankSum=1.644;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1676,180,0
chrXIII	593397	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.51;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1744,186,0
chrXIII	593685	.	A	G	585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.199;QD=10.45;ReadPosRankSum=2.362;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:69:618,69,0
chrXIII	593840	.	G	A	2361	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.38;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2394,252,0
chrXIII	594280	.	T	A	2131	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.91;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2164,237,0
chrXIII	594379	.	T	C	1719	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.96;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1752,195,0
chrXIII	594875	.	A	G	1904	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.26;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1937,213,0
chrXIII	595611	.	T	A	1579	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.34;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1612,171,0
chrXIII	595697	.	T	C	1943	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.08;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1976,213,0
chrXIII	595929	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5304;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1414,156,0
chrXIII	596008	.	G	A	2227	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.96;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2260,240,0
chrXIII	596122	.	T	C	1364	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.31;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1397,153,0
chrXIII	596293	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.4238;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.96;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1437,150,0
chrXIII	596760	.	T	C	1761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.094;QD=22.87;ReadPosRankSum=1.641;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1794,198,0
chrXIII	596917	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.60;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1520,165,0
chrXIII	596993	.	C	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.97;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1903,198,0
chrXIII	597167	.	A	G	1575	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.546;QD=21.58;ReadPosRankSum=1.590;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1608,174,0
chrXIII	597264	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.42;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1401,156,0
chrXIII	597636	.	A	C	2039	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.87;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2072,225,0
chrXIII	597709	.	G	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.56;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1499,165,0
chrXIII	597731	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.49;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1709,192,0
chrXIII	597758	.	G	C	1781	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.36;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1814,204,0
chrXIII	597926	.	G	T	3622.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.1038;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.64;SB=-2.045e+03	GT:AD:DP:GQ:PL	1/1:0,159:160:99:3622,387,0
chrXIII	598154	.	G	A	2039	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2072,219,0
chrXIII	598520	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.8516;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=20.39;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1501,168,0
chrXIII	599023	.	T	C	2389	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;DP=100;Dels=0.00;FS=2.445;HaplotypeScore=7.5270;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.725;QD=23.89;ReadPosRankSum=2.684;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:3,96:100:99:2422,261,0
chrXIII	599192	.	T	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4203;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.22;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1497,162,0
chrXIII	599195	.	T	G	1429	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.363;DP=85;Dels=0.00;FS=5.786;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;MQRankSum=-0.681;QD=16.81;ReadPosRankSum=2.189;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1462,159,0
chrXIII	599343	.	T	C	3426.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=149;Dels=0.00;FS=3.040;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=1.314;QD=22.99;ReadPosRankSum=1.686;SB=-1.904e+03	GT:AD:DP:GQ:PL	1/1:1,148:149:99:3426,384,0
chrXIII	599439	.	A	G	1313	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=3.658;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-0.453;QD=20.20;ReadPosRankSum=1.679;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1346,150,0
chrXIII	599730	.	A	G	995	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;MQRankSum=-0.181;QD=14.85;ReadPosRankSum=1.681;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1028,114,0
chrXIII	599732	.	C	T	1050	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=15.67;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1083,117,0
chrXIII	599735	.	T	C	1001	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=14.51;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1034,114,0
chrXIII	599751	.	C	T	877	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;QD=14.38;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:910,99,0
chrXIII	599808	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=19.92;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1089,114,0
chrXIII	599886	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=1;QD=15.00;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1008,108,0
chrXIII	599901	.	T	C	903	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=1;QD=13.48;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:936,105,0
chrXIII	599907	.	A	G	855	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=1;QD=13.36;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:888,99,0
chrXIII	599973	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=16.44;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1069,114,0
chrXIII	600252	.	T	C	967	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=3;QD=17.27;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1000,111,0
chrXIII	600288	.	T	C	878	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=3;MQRankSum=-0.650;QD=17.22;ReadPosRankSum=1.660;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:911,102,0
chrXIII	600354	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=1;MQRankSum=-1.427;QD=19.04;ReadPosRankSum=1.681;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1347,147,0
chrXIII	600525	.	A	G	952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.411;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.67;MQ0=0;MQRankSum=-1.070;QD=14.00;ReadPosRankSum=1.630;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:985,111,0
chrXIII	600548	.	C	A	1126	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.05;MQ0=0;QD=15.22;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1159,123,0
chrXIII	600549	.	G	A	1122	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;QD=15.58;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1155,117,0
chrXIII	600558	.	C	T	1104	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=42.93;MQ0=2;QD=14.15;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1137,123,0
chrXIII	600564	.	T	A	1308	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=42.51;MQ0=3;QD=16.15;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1341,141,0
chrXIII	600765	.	C	T	847	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=29.61;MQ0=7;QD=18.41;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:880,93,0
chrXIII	600819	.	C	T	1022	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=40.49;MQ0=7;QD=16.22;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:5,58:63:99:1055,111,0
chrXIII	601004	.	T	A	1795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1755;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;MQRankSum=-1.732;QD=21.37;ReadPosRankSum=1.608;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1828,192,0
chrXIII	601104	.	A	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=24.07;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1453,153,0
chrXIII	601213	.	T	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=19.03;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1289,144,0
chrXIII	601257	.	A	C	874	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5655;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=14.57;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:907,105,0
chrXIII	601259	.	G	A	775	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=45.1827;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=12.11;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:90:808,90,0
chrXIII	601355	.	C	T	2301	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4617;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.56;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2334,252,0
chrXIII	601700	.	G	A	1773	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.36;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1806,189,0
chrXIII	601760	.	T	C	1766	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=21.02;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1799,198,0
chrXIII	601986	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=1;QD=20.92;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1393,147,0
chrXIII	602018	.	G	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=30.19;MQ0=1;QD=22.24;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1412,144,0
chrXIII	602096	.	C	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=2;QD=16.79;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1343,141,0
chrXIII	602111	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.402;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.4238;MLEAC=2;MLEAF=1.00;MQ=39.33;MQ0=1;MQRankSum=-0.330;QD=15.00;ReadPosRankSum=0.825;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1308,144,0
chrXIII	602408	.	T	A	1715	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=24.50;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1748,183,0
chrXIII	602462	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=84;Dels=0.00;FS=4.205;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=3;MQRankSum=0.153;QD=19.37;ReadPosRankSum=1.644;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,81:84:99:1660,180,0
chrXIII	602564	.	A	G	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=83;Dels=0.00;FS=5.296;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=1;MQRankSum=-0.568;QD=19.16;ReadPosRankSum=2.791;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:3,80:83:99:1623,177,0
chrXIII	602603	.	G	A	1063	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=1;QD=20.06;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1096,114,0
chrXIII	602618	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=61;Dels=0.00;FS=8.449;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=1;MQRankSum=1.627;QD=18.64;ReadPosRankSum=2.286;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1170,129,0
chrXIII	602663	.	T	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=20.21;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1448,159,0
chrXIII	602744	.	G	A	1396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.897;DP=67;Dels=0.00;FS=3.052;HaplotypeScore=9.9463;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=2.340;QD=20.84;ReadPosRankSum=1.308;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1429,150,0
chrXIII	602774	.	T	C	1265	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=1;QD=20.74;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1298,144,0
chrXIII	602863	.	C	T	1595	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.420;DP=81;Dels=0.00;FS=13.633;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=30.22;MQ0=4;MQRankSum=2.852;QD=19.69;ReadPosRankSum=0.149;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:5,76:81:99:1628,153,0
chrXIII	602909	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=4.346;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.81;MQ0=1;MQRankSum=1.681;QD=21.90;ReadPosRankSum=0.051;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1544,165,0
chrXIII	602939	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=31.99;MQ0=1;QD=20.68;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1212,129,0
chrXIII	602975	.	C	T	782	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.79;MQ0=3;QD=17.77;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:815,87,0
chrXIII	603002	.	A	G	624	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=4;QD=16.86;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:72:657,72,0
chrXIII	603044	.	C	T	676	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=2;QD=15.72;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:78:709,78,0
chrXIII	603083	.	T	C	979	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=1;QD=16.88;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,55:58:99:1012,111,0
chrXIII	603086	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=1;QD=16.88;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1029,114,0
chrXIII	603125	.	C	T	1053	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=17.85;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1086,117,0
chrXIII	603131	.	A	G	924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=-0.133;QD=17.77;ReadPosRankSum=1.666;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:957,105,0
chrXIII	603192	.	T	C	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=4.082;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;MQRankSum=-0.866;QD=18.55;ReadPosRankSum=1.624;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1220,132,0
chrXIII	603225	.	C	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=44.61;MQ0=0;QD=19.88;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1683,180,0
chrXIII	603461	.	A	G	1105	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.3201;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=22.10;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1138,126,0
chrXIII	603572	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=18.58;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1185,129,0
chrXIII	603797	.	G	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.00;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1377,147,0
chrXIII	604098	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.20;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1447,153,0
chrXIII	604285	.	A	C	935	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=17.64;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:968,105,0
chrXIII	604342	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.60;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1149,126,0
chrXIII	604354	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6515;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.64;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1133,120,0
chrXIII	604624	.	T	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.18;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1607,177,0
chrXIII	605013	.	T	C	871	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=53;Dels=0.00;FS=6.040;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;MQRankSum=-0.212;QD=16.43;ReadPosRankSum=2.829;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:3,50:53:99:904,99,0
chrXIII	605014	.	G	A	885	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=16.70;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:918,99,0
chrXIII	605018	.	G	C	1056	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=17.90;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1089,123,0
chrXIII	605171	.	T	C	2641	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.16;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2674,294,0
chrXIII	605203	.	T	C	2460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=121;Dels=0.00;FS=9.259;HaplotypeScore=11.0515;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.539;QD=20.33;ReadPosRankSum=2.389;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:2,119:121:99:2493,267,0
chrXIII	605479	.	C	T	1111	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.16;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1144,123,0
chrXIII	605687	.	G	A	932	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=23.90;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:965,102,0
chrXIII	605741	.	G	A	1131	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.75;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1164,123,0
chrXIII	606580	.	A	C	2073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.663;QD=21.82;ReadPosRankSum=1.695;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:1,93:95:99:2106,228,0
chrXIII	606602	.	A	C	2044	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=20.24;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2077,225,0
chrXIII	606680	.	C	T	1822	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.44;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1855,195,0
chrXIII	606777	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.86;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:867,96,0
chrXIII	606804	.	C	T	765	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.66;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:84:798,84,0
chrXIII	606815	.	C	A	928	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.20;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:961,102,0
chrXIII	606892	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-1.469;QD=19.04;ReadPosRankSum=1.688;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1537,171,0
chrXIII	606899	.	A	T	1624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.064;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.176;QD=20.05;ReadPosRankSum=1.647;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1657,177,0
chrXIII	607553	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.33;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1440,150,0
chrXIII	607855	.	C	T	2842	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.11;SB=-1.507e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2875,303,0
chrXIII	608020	.	T	G	1528	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1949;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.22;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1561,168,0
chrXIII	608116	.	G	A	2041	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.04;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2074,225,0
chrXIII	608168	.	C	T	2599	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.5840;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=18.70;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:2632,285,0
chrXIII	608200	.	A	G	3220.05	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.25;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,159:159:99:3253,360,0
chrXIII	608238	.	G	A	2938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.841;QD=21.60;ReadPosRankSum=-0.713;SB=-1.328e+03	GT:AD:DP:GQ:PL	1/1:1,135:136:99:2971,321,0
chrXIII	608255	.	A	G	2284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=106;Dels=0.00;FS=5.292;HaplotypeScore=4.2148;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.715;QD=21.55;ReadPosRankSum=2.439;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:3,103:106:99:2317,255,0
chrXIII	608340	.	C	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.49;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2017,210,0
chrXIII	608372	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.61;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1445,165,0
chrXIII	608809	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=20.51;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1776,186,0
chrXIII	608922	.	C	T	77.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.515;DP=131;Dels=0.00;FS=26.441;HaplotypeScore=23.6161;MLEAC=1;MLEAF=0.500;MQ=36.32;MQ0=2;MQRankSum=-1.528;QD=0.59;ReadPosRankSum=-4.794;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:104,27:131:99:107,0,1403
chrXIII	608937	.	T	C	2359.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;DP=236;Dels=0.00;FS=22.005;HaplotypeScore=158.3024;MLEAC=1;MLEAF=0.500;MQ=33.93;MQ0=3;MQRankSum=1.457;QD=10.00;ReadPosRankSum=2.802;SB=-8.620e+02	GT:AD:DP:GQ:PL	0/1:69,167:236:99:2389,0,417
chrXIII	608943	.	C	T	1077.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.975;DP=259;Dels=0.00;FS=20.095;HaplotypeScore=186.6213;MLEAC=1;MLEAF=0.500;MQ=33.66;MQ0=4;MQRankSum=-3.824;QD=4.16;ReadPosRankSum=-7.694;SB=-5.430e+02	GT:AD:DP:GQ:PL	0/1:172,87:259:99:1107,0,2090
chrXIII	608946	.	T	C	569.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.969;DP=277;Dels=0.00;FS=0.533;HaplotypeScore=189.1939;MLEAC=1;MLEAF=0.500;MQ=33.39;MQ0=5;MQRankSum=1.418;QD=2.05;ReadPosRankSum=4.771;SB=-3.370e+02	GT:AD:DP:GQ:PL	0/1:211,66:277:99:599,0,3022
chrXIII	608961	.	C	T	231.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.544;DP=344;Dels=0.00;FS=1.811;HaplotypeScore=94.2752;MLEAC=1;MLEAF=0.500;MQ=33.44;MQ0=7;MQRankSum=-0.067;QD=0.67;ReadPosRankSum=-3.447;SB=-1.130e+02	GT:AD:DP:GQ:PL	0/1:289,55:344:99:261,0,4189
chrXIII	608967	.	T	C	980.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.923;DP=352;Dels=0.00;FS=15.257;HaplotypeScore=91.9611;MLEAC=1;MLEAF=0.500;MQ=33.03;MQ0=8;MQRankSum=-0.219;QD=2.78;ReadPosRankSum=1.029;SB=-6.840e+02	GT:AD:DP:GQ:PL	0/1:231,119:351:99:1010,0,3548
chrXIII	608979	.	C	T	5986.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=333;Dels=0.00;FS=13.294;HaplotypeScore=21.1403;MLEAC=2;MLEAF=1.00;MQ=32.62;MQ0=8;MQRankSum=1.229;QD=17.98;ReadPosRankSum=2.455;SB=-3.808e+03	GT:AD:DP:GQ:PL	1/1:4,329:333:99:5986,617,0
chrXIII	609003	.	C	T	5587.01	filter	AC=2;AF=1.00;AN=2;DP=295;Dels=0.00;FS=0.000;HaplotypeScore=4.7630;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=8;QD=18.94;SB=-3.650e+03	GT:AD:DP:GQ:PL	1/1:2,292:295:99:5587,606,0
chrXIII	609006	.	C	T	5227.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.474;DP=286;Dels=0.00;FS=0.000;HaplotypeScore=4.6798;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=8;MQRankSum=0.212;QD=18.28;ReadPosRankSum=1.720;SB=-3.263e+03	GT:AD:DP:GQ:PL	1/1:1,285:286:99:5227,585,0
chrXIII	609063	.	G	A	588	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=78;Dels=0.00;FS=3.424;HaplotypeScore=2.6527;MLEAC=2;MLEAF=1.00;MQ=20.80;MQ0=11;MQRankSum=-0.210;QD=7.54;ReadPosRankSum=1.312;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:66:621,66,0
chrXIII	609084	.	T	C	169.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;DP=75;Dels=0.00;FS=22.692;HaplotypeScore=5.6991;MLEAC=1;MLEAF=0.500;MQ=22.14;MQ0=8;MQRankSum=-2.016;QD=2.25;ReadPosRankSum=-0.728;SB=-5.801e+01	GT:AD:DP:GQ:PL	0/1:26,49:75:99:199,0,290
chrXIII	609090	.	T	C	565	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.7016;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=7;QD=7.34;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:66:598,66,0
chrXIII	609093	.	C	T	168.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;DP=79;Dels=0.00;FS=11.714;HaplotypeScore=4.7083;MLEAC=1;MLEAF=0.500;MQ=23.45;MQ0=6;MQRankSum=-2.175;QD=2.13;ReadPosRankSum=-1.931;SB=-1.150e+02	GT:AD:DP:GQ:PL	0/1:27,52:79:99:198,0,292
chrXIII	609099	.	G	A	537	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.8033;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=6;QD=6.88;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:63:570,63,0
chrXIII	609132	.	T	C	165.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.928;DP=58;Dels=0.00;FS=7.767;HaplotypeScore=32.7902;MLEAC=1;MLEAF=0.500;MQ=25.74;MQ0=0;MQRankSum=-0.955;QD=2.84;ReadPosRankSum=1.408;SB=-1.150e+02	GT:AD:DP:GQ:PL	0/1:21,37:58:99:195,0,247
chrXIII	609156	.	T	C	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;DP=45;Dels=0.00;FS=1.268;HaplotypeScore=4.7115;MLEAC=1;MLEAF=0.500;MQ=31.46;MQ0=1;MQRankSum=1.230;QD=1.02;ReadPosRankSum=1.589;SB=-8.601e+01	GT:AD:DP:GQ:PL	0/1:28,17:45:76:76,0,158
chrXIII	609165	.	C	T	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.3559;MLEAC=1;MLEAF=0.500;MQ=31.45;MQ0=1;MQRankSum=0.468;QD=0.77;ReadPosRankSum=-2.751;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:21,12:35:57:57,0,87
chrXIII	609168	.	T	C	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.303;DP=35;Dels=0.00;FS=1.533;HaplotypeScore=2.7776;MLEAC=1;MLEAF=0.500;MQ=31.45;MQ0=1;MQRankSum=0.401;QD=0.66;ReadPosRankSum=-2.807;SB=-3.501e+01	GT:AD:DP:GQ:PL	0/1:23,11:35:53:53,0,91
chrXIII	609207	.	G	T	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;DP=39;Dels=0.00;FS=10.571;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.99;MQ0=1;MQRankSum=-2.103;QD=0.36;ReadPosRankSum=-4.131;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:24,15:39:44:44,0,88
chrXIII	609210	.	A	T	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;DP=40;Dels=0.00;FS=10.571;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.64;MQ0=2;MQRankSum=-2.164;QD=0.83;ReadPosRankSum=-2.285;SB=-2.301e+01	GT:AD:DP:GQ:PL	0/1:24,15:40:63:63,0,93
chrXIII	609219	.	T	G	42.22	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;DP=38;Dels=0.00;FS=11.024;HaplotypeScore=12.0915;MLEAC=1;MLEAF=0.500;MQ=26.63;MQ0=2;MQRankSum=-1.804;QD=1.11;ReadPosRankSum=2.671;SB=-3.522e+01	GT:AD:DP:GQ:PL	0/1:21,17:38:10:72,0,10
chrXIII	609225	.	C	T	54.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.897;DP=35;Dels=0.03;FS=2.006;HaplotypeScore=21.2569;MLEAC=2;MLEAF=1.00;MQ=25.83;MQ0=3;MQRankSum=1.500;QD=1.56;ReadPosRankSum=1.444;SB=-6.218e+01	GT:AD:DP:GQ:PL	1/1:9,19:34:12:87,12,0
chrXIII	609231	.	C	T	97.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=33;Dels=0.03;FS=1.890;HaplotypeScore=16.7502;MLEAC=2;MLEAF=1.00;MQ=17.20;MQ0=3;MQRankSum=1.976;QD=2.94;ReadPosRankSum=2.415;SB=-1.051e+02	GT:AD:DP:GQ:PL	1/1:8,24:32:18:130,18,0
chrXIII	609288	.	C	T	59.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;DP=84;Dels=0.00;FS=2.210;HaplotypeScore=12.6470;MLEAC=1;MLEAF=0.500;MQ=32.04;MQ0=7;MQRankSum=-1.909;QD=0.70;ReadPosRankSum=-3.979;SB=-9.601e+01	GT:AD:DP:GQ:PL	0/1:61,23:84:89:89,0,910
chrXIII	609317	.	G	A	592.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=8.603;DP=218;Dels=0.00;FS=57.183;HaplotypeScore=184.1275;MLEAC=1;MLEAF=0.500;MQ=29.03;MQ0=9;MQRankSum=-1.822;QD=2.72;ReadPosRankSum=-5.555;SB=-5.770e+02	GT:AD:DP:GQ:PL	0/1:93,124:218:99:622,0,1132
chrXIII	609321	.	C	T	252.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.225;DP=267;Dels=0.00;FS=31.091;HaplotypeScore=321.2562;MLEAC=1;MLEAF=0.500;MQ=28.49;MQ0=10;MQRankSum=-1.000;QD=0.94;ReadPosRankSum=4.674;SB=-2.930e+02	GT:AD:DP:GQ:PL	0/1:212,55:267:99:282,0,1445
chrXIII	609322	.	A	G	249.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;DP=269;Dels=0.00;FS=31.150;HaplotypeScore=323.9751;MLEAC=1;MLEAF=0.500;MQ=28.50;MQ0=10;MQRankSum=-0.004;QD=0.93;ReadPosRankSum=4.909;SB=-2.520e+02	GT:AD:DP:GQ:PL	0/1:214,55:269:99:279,0,1511
chrXIII	609330	.	G	T	348.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.314;DP=329;Dels=0.00;FS=3.630;HaplotypeScore=324.9563;MLEAC=1;MLEAF=0.500;MQ=28.65;MQ0=9;MQRankSum=-2.820;QD=1.06;ReadPosRankSum=0.603;SB=-6.730e+02	GT:AD:DP:GQ:PL	0/1:93,76:329:99:378,0,1088
chrXIII	609336	.	T	C	372.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.978;DP=343;Dels=0.00;FS=29.531;HaplotypeScore=207.1649;MLEAC=1;MLEAF=0.500;MQ=29.16;MQ0=10;MQRankSum=0.336;QD=1.08;ReadPosRankSum=4.295;SB=-4.370e+02	GT:AD:DP:GQ:PL	0/1:262,78:343:99:402,0,1744
chrXIII	609345	.	C	T	1394.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.539;DP=378;Dels=0.00;FS=60.488;HaplotypeScore=265.3243;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=8;MQRankSum=1.413;QD=3.69;ReadPosRankSum=0.748;SB=-1.361e+03	GT:AD:DP:GQ:PL	0/1:220,158:378:99:1424,0,802
chrXIII	609346	.	G	A	905.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.518;DP=384;Dels=0.00;FS=52.598;HaplotypeScore=268.8047;MLEAC=1;MLEAF=0.500;MQ=29.85;MQ0=8;MQRankSum=-1.136;QD=2.36;ReadPosRankSum=-0.183;SB=-6.780e+02	GT:AD:DP:GQ:PL	0/1:154,227:383:99:935,0,1397
chrXIII	609348	.	T	C	823.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.723;DP=390;Dels=0.00;FS=13.523;HaplotypeScore=204.5120;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=8;MQRankSum=2.389;QD=2.11;ReadPosRankSum=2.723;SB=-5.460e+02	GT:AD:DP:GQ:PL	0/1:249,139:389:99:853,0,1641
chrXIII	609366	.	C	T	312.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.948;DP=423;Dels=0.00;FS=28.728;HaplotypeScore=103.3934;MLEAC=1;MLEAF=0.500;MQ=30.37;MQ0=10;MQRankSum=-0.275;QD=0.74;ReadPosRankSum=0.711;SB=-5.760e+02	GT:AD:DP:GQ:PL	0/1:330,93:423:99:342,0,2700
chrXIII	609372	.	T	C	217.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.051;DP=413;Dels=0.00;FS=15.366;HaplotypeScore=176.4349;MLEAC=1;MLEAF=0.500;MQ=30.10;MQ0=12;MQRankSum=1.799;QD=0.53;ReadPosRankSum=-1.709;SB=-9.401e+01	GT:AD:DP:GQ:PL	0/1:318,95:413:99:247,0,2764
chrXIII	609384	.	C	T	452.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=9.142;DP=376;Dels=0.00;FS=23.262;HaplotypeScore=82.4011;MLEAC=1;MLEAF=0.500;MQ=30.32;MQ0=14;MQRankSum=-2.159;QD=1.20;ReadPosRankSum=-9.937;SB=-7.660e+02	GT:AD:DP:GQ:PL	0/1:184,192:376:99:482,0,2216
chrXIII	609394	.	G	A	323.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.755;DP=333;Dels=0.00;FS=13.057;HaplotypeScore=14.4431;MLEAC=1;MLEAF=0.500;MQ=30.60;MQ0=16;MQRankSum=-1.215;QD=0.97;ReadPosRankSum=-12.773;SB=-5.850e+02	GT:AD:DP:GQ:PL	0/1:177,155:333:99:353,0,2105
chrXIII	609420	.	G	A	2098	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.026;DP=147;Dels=0.00;FS=10.475;HaplotypeScore=12.8873;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=14;MQRankSum=0.813;QD=14.27;ReadPosRankSum=0.827;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:16,131:147:99:2131,170,0
chrXIII	609441	.	T	C	487.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;DP=69;Dels=0.00;FS=13.667;HaplotypeScore=5.6899;MLEAC=1;MLEAF=0.500;MQ=32.85;MQ0=14;MQRankSum=2.887;QD=7.06;ReadPosRankSum=-1.100;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,32:69:99:517,0,302
chrXIII	609447	.	T	C	624	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.6983;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=13;QD=12.73;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:78:657,78,0
chrXIII	609450	.	C	T	103.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;DP=41;Dels=0.00;FS=10.089;HaplotypeScore=7.6185;MLEAC=1;MLEAF=0.500;MQ=24.47;MQ0=13;MQRankSum=0.455;QD=2.51;ReadPosRankSum=-0.887;SB=-7.007e+00	GT:AD:DP:GQ:PL	0/1:31,10:41:99:133,0,185
chrXIII	609456	.	G	A,T	271.01	SnpCluster;filter	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.193;DP=40;Dels=0.00;FS=6.021;HaplotypeScore=2.7736;MLEAC=1,1;MLEAF=0.500,0.500;MQ=26.28;MQ0=13;MQRankSum=-0.578;QD=6.78;ReadPosRankSum=0.835;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/2:1,32,7:40:57:331,90,57,241,0,229
chrXIII	609498	.	T	C	151.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.4769;MLEAC=1;MLEAF=0.500;MQ=37.08;MQ0=0;MQRankSum=-3.434;QD=1.82;ReadPosRankSum=2.856;SB=-1.290e+02	GT:AD:DP:GQ:PL	0/1:55,28:83:99:181,0,718
chrXIII	609499	.	G	A	157.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.977;DP=89;Dels=0.01;FS=2.198;HaplotypeScore=6.0542;MLEAC=1;MLEAF=0.500;MQ=36.59;MQ0=0;MQRankSum=-3.696;QD=1.76;ReadPosRankSum=2.586;SB=-1.320e+02	GT:AD:DP:GQ:PL	0/1:56,30:88:99:187,0,692
chrXIII	609501	.	C	T	147.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;DP=90;Dels=0.01;FS=8.243;HaplotypeScore=6.0542;MLEAC=1;MLEAF=0.500;MQ=36.51;MQ0=0;MQRankSum=-4.091;QD=1.63;ReadPosRankSum=1.099;SB=-1.310e+02	GT:AD:DP:GQ:PL	0/1:57,32:89:99:177,0,744
chrXIII	609548	.	C	T	936.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.240;DP=174;Dels=0.00;FS=25.175;HaplotypeScore=10.1981;MLEAC=1;MLEAF=0.500;MQ=37.07;MQ0=0;MQRankSum=-1.814;QD=5.38;ReadPosRankSum=0.812;SB=-5.580e+02	GT:AD:DP:GQ:PL	0/1:101,70:174:99:966,0,1155
chrXIII	609570	.	A	T	1380.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;DP=192;Dels=0.00;FS=9.206;HaplotypeScore=7.2564;MLEAC=1;MLEAF=0.500;MQ=37.00;MQ0=0;MQRankSum=-0.688;QD=7.19;ReadPosRankSum=-1.263;SB=-5.120e+02	GT:AD:DP:GQ:PL	0/1:88,104:192:99:1410,0,1132
chrXIII	609576	.	C	T	1299.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;DP=219;Dels=0.00;FS=12.584;HaplotypeScore=6.5111;MLEAC=1;MLEAF=0.500;MQ=36.11;MQ0=0;MQRankSum=0.305;QD=5.93;ReadPosRankSum=0.608;SB=-8.250e+02	GT:AD:DP:GQ:PL	0/1:116,103:219:99:1329,0,1442
chrXIII	609603	.	C	T	1056.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;DP=243;Dels=0.00;FS=7.486;HaplotypeScore=5.7522;MLEAC=1;MLEAF=0.500;MQ=34.53;MQ0=2;MQRankSum=-0.727;QD=4.35;ReadPosRankSum=1.382;SB=-3.870e+02	GT:AD:DP:GQ:PL	0/1:128,115:243:99:1086,0,1718
chrXIII	609684	.	C	T	86.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;DP=100;Dels=0.00;FS=17.947;HaplotypeScore=255.3835;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=10;MQRankSum=1.936;QD=0.86;ReadPosRankSum=2.208;SB=-9.501e+01	GT:AD:DP:GQ:PL	0/1:69,31:100:99:116,0,465
chrXIII	609696	.	T	C	91.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.461;DP=104;Dels=0.00;FS=76.652;HaplotypeScore=37.7926;MLEAC=1;MLEAF=0.500;MQ=26.76;MQ0=10;MQRankSum=1.872;QD=0.88;ReadPosRankSum=1.289;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:78,26:104:99:121,0,512
chrXIII	609699	.	T	A	137.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;DP=112;Dels=0.00;FS=42.224;HaplotypeScore=61.9917;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=10;MQRankSum=-0.183;QD=1.22;ReadPosRankSum=3.016;SB=-1.770e+02	GT:AD:DP:GQ:PL	0/1:69,43:112:99:167,0,484
chrXIII	609708	.	C	T	198.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;DP=115;Dels=0.00;FS=44.633;HaplotypeScore=21.5236;MLEAC=1;MLEAF=0.500;MQ=25.58;MQ0=9;MQRankSum=0.649;QD=1.72;ReadPosRankSum=0.459;SB=-2.600e+02	GT:AD:DP:GQ:PL	0/1:59,56:115:99:228,0,294
chrXIII	609710	.	G	A	229.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.804;DP=116;Dels=0.00;FS=47.540;HaplotypeScore=21.5236;MLEAC=1;MLEAF=0.500;MQ=25.61;MQ0=9;MQRankSum=0.621;QD=1.97;ReadPosRankSum=0.334;SB=-2.910e+02	GT:AD:DP:GQ:PL	0/1:60,56:116:99:259,0,287
chrXIII	609717	.	C	T	176.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.054;DP=131;Dels=0.00;FS=16.494;HaplotypeScore=56.2635;MLEAC=1;MLEAF=0.500;MQ=26.03;MQ0=9;MQRankSum=-0.643;QD=1.34;ReadPosRankSum=-0.654;SB=-1.820e+02	GT:AD:DP:GQ:PL	0/1:88,43:131:99:206,0,380
chrXIII	609723	.	G	A	242.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.099;DP=131;Dels=0.00;FS=39.396;HaplotypeScore=84.4935;MLEAC=1;MLEAF=0.500;MQ=26.70;MQ0=6;MQRankSum=0.025;QD=1.85;ReadPosRankSum=-3.619;SB=-3.010e+02	GT:AD:DP:GQ:PL	0/1:56,58:131:99:272,0,263
chrXIII	609729	.	T	C	175.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.031;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=138.9020;MLEAC=1;MLEAF=0.500;MQ=27.16;MQ0=5;MQRankSum=0.981;QD=1.33;ReadPosRankSum=0.466;SB=-2.790e+02	GT:AD:DP:GQ:PL	0/1:89,43:132:99:205,0,537
chrXIII	609739	.	G	A	326.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.875;DP=151;Dels=0.00;FS=0.615;HaplotypeScore=52.9447;MLEAC=1;MLEAF=0.500;MQ=30.94;MQ0=4;MQRankSum=-0.985;QD=2.16;ReadPosRankSum=0.195;SB=-6.610e+02	GT:AD:DP:GQ:PL	0/1:84,66:151:99:356,0,592
chrXIII	609741	.	T	C	184.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.116;DP=151;Dels=0.00;FS=10.799;HaplotypeScore=52.9447;MLEAC=1;MLEAF=0.500;MQ=31.32;MQ0=3;MQRankSum=-1.125;QD=1.22;ReadPosRankSum=4.413;SB=-3.120e+02	GT:AD:DP:GQ:PL	0/1:97,54:151:99:214,0,809
chrXIII	609747	.	C	A	181.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;DP=146;Dels=0.00;FS=2.120;HaplotypeScore=166.0529;MLEAC=1;MLEAF=0.500;MQ=31.83;MQ0=2;MQRankSum=-1.095;QD=1.24;ReadPosRankSum=1.366;SB=-5.460e+02	GT:AD:DP:GQ:PL	0/1:82,64:146:99:211,0,842
chrXIII	609750	.	C	T	143.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.915;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=152.3188;MLEAC=1;MLEAF=0.500;MQ=32.23;MQ0=1;MQRankSum=-1.983;QD=1.07;ReadPosRankSum=1.648;SB=-4.960e+02	GT:AD:DP:GQ:PL	0/1:80,54:134:99:173,0,842
chrXIII	609759	.	T	C	850.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.806;DP=126;Dels=0.00;FS=8.131;HaplotypeScore=103.5401;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=1;MQRankSum=4.025;QD=6.75;ReadPosRankSum=-0.566;SB=-4.603e+02	GT:AD:DP:GQ:PL	1/1:61,65:126:15:883,15,0
chrXIII	609774	.	T	C	984.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.685;DP=115;Dels=0.00;FS=2.712;HaplotypeScore=39.9683;MLEAC=1;MLEAF=0.500;MQ=33.24;MQ0=0;MQRankSum=1.201;QD=8.56;ReadPosRankSum=3.848;SB=-7.211e+02	GT:AD:DP:GQ:PL	0/1:32,83:115:15:1014,0,15
chrXIII	609786	.	C	T	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;DP=129;Dels=0.00;FS=14.356;HaplotypeScore=69.9790;MLEAC=1;MLEAF=0.500;MQ=33.38;MQ0=0;MQRankSum=-2.654;QD=0.20;ReadPosRankSum=-3.474;SB=-2.150e+02	GT:AD:DP:GQ:PL	0/1:90,39:129:56:56,0,1084
chrXIII	609793	.	G	A	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.821;DP=122;Dels=0.00;FS=10.958;HaplotypeScore=87.9394;MLEAC=1;MLEAF=0.500;MQ=34.13;MQ0=0;MQRankSum=-1.691;QD=0.18;ReadPosRankSum=-5.660;SB=-2.140e+02	GT:AD:DP:GQ:PL	0/1:83,39:122:52:52,0,1127
chrXIII	609834	.	T	C	235.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;DP=72;Dels=0.00;FS=17.486;HaplotypeScore=35.3144;MLEAC=1;MLEAF=0.500;MQ=37.25;MQ0=0;MQRankSum=0.044;QD=3.26;ReadPosRankSum=-2.612;SB=-7.901e+01	GT:AD:DP:GQ:PL	0/1:49,22:72:99:265,0,399
chrXIII	609921	.	C	A	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.531;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=20.0946;MLEAC=2;MLEAF=1.00;MQ=40.09;MQ0=0;MQRankSum=1.594;QD=16.60;ReadPosRankSum=0.254;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:1,74:77:99:1311,141,0
chrXIII	609992	.	G	A	1772	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.16;MQ0=0;QD=16.88;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1805,195,0
chrXIII	609994	.	C	T	1821	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=44.46;MQ0=0;QD=17.34;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,102:105:99:1854,195,0
chrXIII	610070	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=23.33;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1853,198,0
chrXIII	610073	.	G	A	1791	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=22.11;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1824,198,0
chrXIII	610237	.	G	T	887	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.63;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:920,99,0
chrXIII	610501	.	C	G	1926	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.2571;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.40;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1959,216,0
chrXIII	610627	.	T	A	2600	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=24.53;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2633,285,0
chrXIII	610865	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.89;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1621,174,0
chrXIII	610968	.	C	T	2591	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=21.07;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:0,121:123:99:2624,276,0
chrXIII	610972	.	G	A	2510	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.5594;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.76;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:0,123:127:99:2543,276,0
chrXIII	610995	.	A	C	2500	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=17.48;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2533,285,0
chrXIII	611396	.	A	T	3367.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=164;Dels=0.05;FS=3.869;HaplotypeScore=11.8809;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.155;QD=20.53;ReadPosRankSum=1.710;SB=-1.695e+03	GT:AD:DP:GQ:PL	1/1:1,155:156:99:3367,357,0
chrXIII	611803	.	G	A	1391	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1424,150,0
chrXIII	611899	.	C	G	972	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:99:1005,108,0
chrXIII	612029	.	G	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.45;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1084,114,0
chrXIII	612137	.	A	G	1491	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.30;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1524,168,0
chrXIII	612269	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=60;Dels=0.00;FS=6.394;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.874;QD=21.20;ReadPosRankSum=2.368;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1305,144,0
chrXIII	612492	.	C	T	1077	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.58;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1110,117,0
chrXIII	612545	.	A	G	1148	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1181,129,0
chrXIII	612690	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=45;Dels=0.00;FS=3.782;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.201;QD=16.84;ReadPosRankSum=1.652;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:1,42:45:87:791,87,0
chrXIII	613009	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1583;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.86;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1250,135,0
chrXIII	613158	.	T	C	1198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.702;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;MQRankSum=0.615;QD=19.32;ReadPosRankSum=1.621;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1231,138,0
chrXIII	613284	.	G	A	1048	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=18.39;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1081,120,0
chrXIII	613383	.	A	G	757	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=17.60;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:790,87,0
chrXIII	613424	.	G	A	871	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.78;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:904,96,0
chrXIII	613425	.	T	A	846	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.27;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:879,96,0
chrXIII	613437	.	T	A	696	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=15.82;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:729,78,0
chrXIII	613595	.	G	A	1402	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.03;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1435,147,0
chrXIII	613737	.	T	C	1560	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=25.57;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1593,177,0
chrXIII	613794	.	A	C	1000	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.41;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1033,111,0
chrXIII	613875	.	C	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.27;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1249,141,0
chrXIII	613950	.	G	A	2274	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.72;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2307,243,0
chrXIII	614450	.	A	G	2983	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=9.6544;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.16;SB=-1.461e+03	GT:AD:DP:GQ:PL	1/1:0,139:141:99:3016,330,0
chrXIII	614840	.	A	G	1986	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=19.66;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2019,222,0
chrXIII	614847	.	C	T	2033	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=20.74;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2066,216,0
chrXIII	615436	.	T	A	1884	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.43;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1917,210,0
chrXIII	615554	.	T	G	1349	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.48;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1382,153,0
chrXIII	615603	.	A	G	1203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=5.156;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=0.264;QD=20.39;ReadPosRankSum=1.674;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1236,138,0
chrXIII	615663	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.75;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1340,141,0
chrXIII	615950	.	T	C	1911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.3433;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.142;QD=21.72;ReadPosRankSum=1.614;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1944,213,0
chrXIII	616086	.	A	G	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=11.287;HaplotypeScore=5.9098;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=1.351;QD=22.95;ReadPosRankSum=2.391;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1938,219,0
chrXIII	616262	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.561;QD=18.79;ReadPosRankSum=1.689;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1574,171,0
chrXIII	616438	.	G	A	1931	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.99;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1964,213,0
chrXIII	616459	.	T	C	1602	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.36;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1635,177,0
chrXIII	616481	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.174;QD=18.94;ReadPosRankSum=2.900;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1359,150,0
chrXIII	616622	.	T	C	1344	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.03;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1377,150,0
chrXIII	616649	.	T	C	1364	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.36;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1397,153,0
chrXIII	617306	.	A	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.63;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1972,216,0
chrXIII	617657	.	A	G	1743	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.15;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1776,198,0
chrXIII	618075	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.17;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1474,156,0
chrXIII	618249	.	T	G	2667	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=20.84;SB=-1.603e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2700,297,0
chrXIII	618829	.	A	T	2010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.137;QD=20.10;ReadPosRankSum=1.662;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2043,228,0
chrXIII	619123	.	A	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8195;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=18.32;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1279,141,0
chrXIII	619339	.	T	A	617	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.057;DP=46;Dels=0.00;FS=3.029;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=0.761;QD=13.41;ReadPosRankSum=2.226;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:69:650,69,0
chrXIII	619387	.	T	C	892	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-0.609;QD=24.11;ReadPosRankSum=1.639;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:99:925,99,0
chrXIII	619538	.	C	G	1061	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.8468;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.40;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1094,123,0
chrXIII	619660	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.74;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1298,144,0
chrXIII	620533	.	A	G	977	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=18.79;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1010,111,0
chrXIII	621112	.	A	G	1479	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7667;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.41;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1512,165,0
chrXIII	621180	.	G	T	1930	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1963,201,0
chrXIII	621333	.	G	A	975	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.16;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1008,108,0
chrXIII	621489	.	C	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.28;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1587,171,0
chrXIII	621668	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=3.245;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=-0.501;QD=18.16;ReadPosRankSum=1.687;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1431,159,0
chrXIII	622063	.	A	G	765	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.79;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:87:798,87,0
chrXIII	622071	.	A	C	808	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=18.36;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:93:841,93,0
chrXIII	622076	.	T	G	826	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=18.77;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:96:859,96,0
chrXIII	622122	.	A	C	1114	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.02;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1147,123,0
chrXIII	622209	.	A	G	1007	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.38;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1040,114,0
chrXIII	622286	.	T	C	1216	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=25.87;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1249,135,0
chrXIII	622437	.	A	G	663	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.10;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:696,78,0
chrXIII	622608	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=17.54;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1401,156,0
chrXIII	622664	.	T	G	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.577;QD=19.04;ReadPosRankSum=1.681;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1328,150,0
chrXIII	622706	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=20.63;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1539,168,0
chrXIII	622747	.	T	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.44;MQ0=0;QD=18.57;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1110,126,0
chrXIII	622752	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;MQRankSum=-0.152;QD=19.14;ReadPosRankSum=1.672;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1124,123,0
chrXIII	623037	.	A	G	1739	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.19;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1772,198,0
chrXIII	623049	.	G	A	1620	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.19;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1653,180,0
chrXIII	623124	.	T	C	976	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=17.12;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1009,111,0
chrXIII	623127	.	C	T	968	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=16.69;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1001,108,0
chrXIII	623505	.	C	T	995	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=17.46;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1028,108,0
chrXIII	623510	.	T	C	975	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=17.73;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1008,111,0
chrXIII	623598	.	T	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.81;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1447,150,0
chrXIII	623608	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=20.44;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1423,150,0
chrXIII	623868	.	G	A	1085	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.73;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1118,120,0
chrXIII	623896	.	G	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=19.32;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1115,120,0
chrXIII	624267	.	G	A	1503	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.12;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1536,171,0
chrXIII	624297	.	A	G	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=67;Dels=0.00;FS=4.771;HaplotypeScore=7.2379;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=0.000;QD=22.49;ReadPosRankSum=1.680;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1540,171,0
chrXIII	624780	.	C	T	1786	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.1180;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.41;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1819,195,0
chrXIII	624949	.	A	G	1793	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.7565;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.87;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1826,201,0
chrXIII	625068	.	T	C	2207	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.36;SB=-1.510e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2240,243,0
chrXIII	625245	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.13;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1702,183,0
chrXIII	625730	.	A	G	206.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.162;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=5.3887;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;MQRankSum=1.416;QD=8.58;ReadPosRankSum=0.373;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:3,15:23:27:239,27,0
chrXIII	625824	.	G	C	351	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=35.17;MQ0=0;QD=9.00;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:42:384,42,0
chrXIII	625828	.	G	A	274	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=7.21;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:33:307,33,0
chrXIII	625846	.	A	T	248	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.72;MQ0=0;QD=5.77;SB=-5.702e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:30:281,30,0
chrXIII	625850	.	T	C	218.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=5.45;SB=-5.502e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:27:251,27,0
chrXIII	625851	.	T	C	190.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.51;MQ0=0;QD=4.87;SB=-5.504e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:24:223,24,0
chrXIII	625858	.	C	T	242	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.77;MQ0=0;QD=5.15;SB=-8.602e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:30:275,30,0
chrXIII	625864	.	T	A	96.26	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.79;MQ0=0;QD=2.19;SB=-5.927e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:15:129,15,0
chrXIII	625931	.	C	T	454	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.79;MQ0=0;QD=11.07;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:51:487,51,0
chrXIII	625941	.	C	T	444	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=12.00;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:51:477,51,0
chrXIII	625982	.	C	T	675	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.05;MQ0=0;QD=14.36;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:78:708,78,0
chrXIII	626109	.	C	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=20.35;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1091,120,0
chrXIII	626128	.	A	G	1030	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;QD=20.60;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1063,117,0
chrXIII	626140	.	C	T	1099	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.50;MQ0=0;QD=21.13;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1132,120,0
chrXIII	626430	.	A	G	953	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.85;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:986,108,0
chrXIII	626717	.	A	G	1789	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.36;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1822,201,0
chrXIII	627002	.	T	C	2053	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=16.3407;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-0.310;QD=21.39;ReadPosRankSum=1.696;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2086,228,0
chrXIII	627290	.	G	A	1062	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.31;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1095,117,0
chrXIII	627725	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1571,174,0
chrXIII	627939	.	C	T	2082	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2115,222,0
chrXIII	628401	.	G	T	1157	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.04;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1190,126,0
chrXIII	628415	.	G	A	925	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=17.45;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:958,102,0
chrXIII	628498	.	C	A	581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.427;QD=17.09;ReadPosRankSum=1.427;SB=-1.180e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:63:614,63,0
chrXIII	628650	.	A	G	555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=0.763;QD=22.20;ReadPosRankSum=1.595;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:1,24:25:66:588,66,0
chrXIII	628879	.	T	G	989	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=20.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1022,114,0
chrXIII	628919	.	A	G	943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.115;QD=20.50;ReadPosRankSum=0.269;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:1,44:46:99:976,108,0
chrXIII	628982	.	T	A	1350	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-1.565;QD=21.43;ReadPosRankSum=1.621;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1383,159,0
chrXIII	629060	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=25.74;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1835,192,0
chrXIII	629269	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.0527;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=22.14;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1937,216,0
chrXIII	629290	.	G	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.43;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1549,165,0
chrXIII	629294	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=18.01;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1618,168,0
chrXIII	629663	.	A	G	2692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.352;QD=22.62;ReadPosRankSum=1.703;SB=-1.402e+03	GT:AD:DP:GQ:PL	1/1:1,117:119:99:2725,306,0
chrXIII	629793	.	C	T	2231	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.54;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2264,240,0
chrXIII	629993	.	C	A	1977	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2010,216,0
chrXIII	630199	.	C	T	1421	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.56;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1454,153,0
chrXIII	630246	.	T	A	1333	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.229;DP=71;Dels=0.00;FS=17.432;HaplotypeScore=1.9598;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-0.312;QD=18.77;ReadPosRankSum=3.229;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:4,67:71:99:1366,144,0
chrXIII	630249	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.7432;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.34;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1390,150,0
chrXIII	630317	.	T	C	1958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=2.910;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=0.358;QD=22.77;ReadPosRankSum=2.393;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1991,216,0
chrXIII	630353	.	T	C	1892	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.65;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1925,204,0
chrXIII	630740	.	T	G	2701	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.8400;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.28;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2734,300,0
chrXIII	630977	.	A	G	2063	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.92;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2096,234,0
chrXIII	631158	.	A	G	2823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.612;DP=115;Dels=0.00;FS=5.422;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.401;QD=24.55;ReadPosRankSum=1.702;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2856,309,0
chrXIII	631591	.	G	A	2489	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.70;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2522,267,0
chrXIII	631615	.	A	G	2226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.322;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-0.223;QD=22.04;ReadPosRankSum=1.698;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2259,252,0
chrXIII	631670	.	T	C	1997	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.087;QD=19.58;ReadPosRankSum=1.562;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2030,216,0
chrXIII	632006	.	C	T	2654	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=22.30;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2687,288,0
chrXIII	632030	.	A	C	2232	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.58;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2265,246,0
chrXIII	632286	.	A	G	2119	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.5819;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.62;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2152,234,0
chrXIII	632468	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=27.39;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1731,180,0
chrXIII	632657	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=20.01;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1634,177,0
chrXIII	632810	.	C	T	1785	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.50;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1818,192,0
chrXIII	633062	.	A	G	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-0.049;QD=22.71;ReadPosRankSum=1.683;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1623,177,0
chrXIII	633113	.	C	T	1838	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.14;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1871,204,0
chrXIII	633857	.	T	C	1949	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=1;QD=18.56;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,100:105:99:1982,225,0
chrXIII	633893	.	G	A	1773	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=14.7394;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=1;QD=18.86;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1806,192,0
chrXIII	634112	.	A	G	542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=1;MQRankSum=-0.140;QD=14.26;ReadPosRankSum=1.639;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:2,36:38:66:575,66,0
chrXIII	634582	.	G	A	1005	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.12;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1038,117,0
chrXIII	634607	.	T	C	668	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=22.27;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:701,78,0
chrXIII	634615	.	T	C	569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;MQRankSum=0.619;QD=20.32;ReadPosRankSum=1.486;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,27:28:66:602,66,0
chrXIII	634650	.	C	T	434	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.69;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:48:467,48,0
chrXIII	634668	.	G	A	322	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=12.38;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:39:355,39,0
chrXIII	634674	.	T	C	298	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=12.96;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:36:331,36,0
chrXIII	635124	.	A	G	2717	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=107;Dels=0.00;FS=4.690;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=1.569;QD=25.39;ReadPosRankSum=1.601;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,105:107:99:2750,303,0
chrXIII	635337	.	T	G	1915	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.01;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1948,210,0
chrXIII	635402	.	A	G	1986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.6775;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=1.321;QD=20.47;ReadPosRankSum=2.398;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:2,94:97:99:2019,222,0
chrXIII	635448	.	A	G	1902	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.919;DP=88;Dels=0.00;FS=2.588;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;MQRankSum=-0.663;QD=21.61;ReadPosRankSum=2.826;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:3,84:88:99:1935,210,0
chrXIII	635501	.	G	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.67;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1583,168,0
chrXIII	635513	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.78;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1423,153,0
chrXIII	635544	.	G	A	1462	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.24;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1495,162,0
chrXIII	635673	.	C	A	1293	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.2492;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.29;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1326,138,0
chrXIII	635760	.	G	A	937	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.6560;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=19.12;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:970,105,0
chrXIII	636081	.	G	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.42;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1156,129,0
chrXIII	636091	.	C	A	1166	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.76;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1199,132,0
chrXIII	636208	.	C	T	2211	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.77;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2244,240,0
chrXIII	637013	.	A	T	667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.933;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=0.405;QD=14.19;ReadPosRankSum=1.585;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:75:700,75,0
chrXIII	637026	.	T	C	479	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=11.97;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:57:512,57,0
chrXIII	637066	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.09;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:865,96,0
chrXIII	637295	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=18.68;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1882,198,0
chrXIII	637313	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.07;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1749,192,0
chrXIII	637373	.	C	T	1746	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.04;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1779,186,0
chrXIII	637515	.	G	A	1846	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.79;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1879,195,0
chrXIII	637703	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=6.651;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=1.217;QD=20.30;ReadPosRankSum=1.685;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1535,168,0
chrXIII	638364	.	T	C	1118	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.70;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1151,126,0
chrXIII	638467	.	C	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.24;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1567,165,0
chrXIII	638480	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.51;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1310,144,0
chrXIII	639659	.	C	T	2217	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.72;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2250,240,0
chrXIII	640295	.	G	A	1451	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.7883;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.03;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1484,159,0
chrXIII	640619	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.139;HaplotypeScore=7.3627;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.021;QD=20.89;ReadPosRankSum=1.649;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1767,195,0
chrXIII	640720	.	G	C	2101	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.61;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2134,234,0
chrXIII	640737	.	G	A	2267	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=23.13;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2300,249,0
chrXIII	640781	.	C	T	1925	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=21.39;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1958,210,0
chrXIII	640801	.	A	G	1891	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.33;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1924,210,0
chrXIII	641090	.	A	G	899	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.35;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:932,102,0
chrXIII	641091	.	A	G	916	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.36;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:949,105,0
chrXIII	641281	.	C	T	1096	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.40;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1129,126,0
chrXIII	641296	.	T	C	1239	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.49;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1272,144,0
chrXIII	641548	.	A	G	935	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.08;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,46:49:99:968,108,0
chrXIII	641634	.	C	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=21.33;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1462,153,0
chrXIII	641923	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.3630;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=22.36;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1889,201,0
chrXIII	642068	.	A	T	2065	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2491;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.45;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2098,225,0
chrXIII	642208	.	C	T	2158	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.25;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2191,231,0
chrXIII	642868	.	G	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.34;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1406,150,0
chrXIII	643348	.	A	T	1893	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=19.52;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1926,204,0
chrXIII	643424	.	G	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.88;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1298,141,0
chrXIII	643425	.	G	C	1262	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.56;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1295,144,0
chrXIII	643493	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.404;QD=21.45;ReadPosRankSum=1.675;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1320,144,0
chrXIII	644595	.	G	A	2310	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.7742;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.65;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2343,249,0
chrXIII	644973	.	T	G	1467	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=6.272;HaplotypeScore=6.6010;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.954;QD=16.48;ReadPosRankSum=1.693;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1500,162,0
chrXIII	645040	.	C	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=13.28;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1467,156,0
chrXIII	645047	.	C	G	1411	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=13.83;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1444,159,0
chrXIII	645101	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=14.27;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1317,144,0
chrXIII	645302	.	C	T	1364	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.67;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1397,150,0
chrXIII	645345	.	G	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=26.75;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1611,168,0
chrXIII	645420	.	A	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=24.45;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1549,165,0
chrXIII	645754	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.08;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1216,129,0
chrXIII	645786	.	G	A	951	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=14.63;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:984,105,0
chrXIII	645797	.	G	A	781	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=12.20;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:87:814,87,0
chrXIII	645814	.	C	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.57;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1053,111,0
chrXIII	645859	.	G	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=17.24;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1343,144,0
chrXIII	645914	.	C	G	1165	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.40;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1198,132,0
chrXIII	646115	.	A	G	1862	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=23.27;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1895,207,0
chrXIII	646181	.	G	A	2133	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.18;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2166,225,0
chrXIII	646241	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.94;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2029,225,0
chrXIII	646699	.	G	T	2407	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.71;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2440,258,0
chrXIII	647012	.	G	A	2720	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.42;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2753,285,0
chrXIII	647615	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.42;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1602,171,0
chrXIII	647896	.	A	C	3230.05	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.1728;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.07;SB=-1.601e+03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:3263,354,0
chrXIII	648168	.	T	A	2101	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.12;MQ0=0;QD=23.34;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2134,225,0
chrXIII	648335	.	A	G	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=90;Dels=0.00;FS=2.653;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.609;QD=20.12;ReadPosRankSum=2.393;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:2,85:90:99:1844,201,0
chrXIII	648638	.	A	G	1772	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1805,195,0
chrXIII	648769	.	C	T	1808	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.78;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1841,195,0
chrXIII	648809	.	A	G	2059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.266;DP=95;Dels=0.00;FS=2.861;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.197;QD=21.67;ReadPosRankSum=2.345;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:2,92:95:99:2092,228,0
chrXIII	648932	.	G	T	1604	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.25;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1637,177,0
chrXIII	649250	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.59;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1236,129,0
chrXIII	649424	.	A	G	2273	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=6.383;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=-1.143;QD=22.73;ReadPosRankSum=1.697;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2306,246,0
chrXIII	649473	.	G	A	2153	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.20;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2186,240,0
chrXIII	649520	.	A	C	2045	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=22.23;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2078,228,0
chrXIII	649543	.	T	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=21.49;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1924,198,0
chrXIII	649592	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.71;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1414,156,0
chrXIII	649796	.	G	A	2735	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=7.8712;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=21.37;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2768,294,0
chrXIII	649834	.	G	A	2930	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.78;SB=-1.578e+03	GT:AD:DP:GQ:PL	1/1:0,139:141:99:2963,318,0
chrXIII	649860	.	C	T	2753	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.57;SB=-1.677e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2786,288,0
chrXIII	649905	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=1.089;QD=19.29;ReadPosRankSum=1.683;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:1,69:73:99:1441,156,0
chrXIII	650015	.	A	G	1467	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.92;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1500,162,0
chrXIII	650025	.	C	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.63;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1601,171,0
chrXIII	650044	.	A	C	1728	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=20.33;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1761,198,0
chrXIII	650512	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.50;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1293,144,0
chrXIII	650714	.	T	C	1613	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.38;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1646,180,0
chrXIII	651148	.	A	G	1954	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.26;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1987,213,0
chrXIII	651277	.	A	G	2597	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.01;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,115:118:99:2630,282,0
chrXIII	651996	.	C	T	1212	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.87;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1245,135,0
chrXIII	652003	.	A	G	1190	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.19;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1223,135,0
chrXIII	652026	.	G	A	1073	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=18.82;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1106,114,0
chrXIII	652077	.	G	A	601	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=18.78;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:69:634,69,0
chrXIII	652186	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.12;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1258,138,0
chrXIII	652187	.	G	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.88;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1324,141,0
chrXIII	652277	.	T	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.96;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1594,174,0
chrXIII	652690	.	A	C	799	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=18.58;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:832,90,0
chrXIII	652744	.	A	G	1640	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.16;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1673,180,0
chrXIII	652951	.	A	T	809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.228;DP=86;Dels=0.00;FS=5.789;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;MQRankSum=1.681;QD=9.41;ReadPosRankSum=-6.556;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:30,56:86:93:842,93,0
chrXIII	652964	.	T	A	395.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DP=82;Dels=0.00;FS=3.134;HaplotypeScore=4.1314;MLEAC=1;MLEAF=0.500;MQ=36.68;MQ0=0;MQRankSum=-0.236;QD=4.82;ReadPosRankSum=-7.456;SB=-1.620e+02	GT:AD:DP:GQ:PL	0/1:52,30:82:99:425,0,471
chrXIII	653063	.	C	A	1036	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.14;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1069,117,0
chrXIII	653102	.	T	C	1119	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.98;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1152,129,0
chrXIII	653300	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=18.10;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1246,144,0
chrXIII	653418	.	A	G	1092	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.41;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1125,120,0
chrXIII	653486	.	G	T	1014	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.88;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1047,114,0
chrXIII	653617	.	C	T	990	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.8742;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=16.23;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1023,114,0
chrXIII	653704	.	C	T	1457	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.08;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1490,159,0
chrXIII	653809	.	T	C	836	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=20.39;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:869,93,0
chrXIII	653832	.	G	A	888	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.12;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:921,102,0
chrXIII	654423	.	C	T	4884.01	PASS	AC=2;AF=1.00;AN=2;DP=220;Dels=0.00;FS=0.000;HaplotypeScore=17.5314;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.20;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:0,217:220:99:4884,525,0
chrXIII	654750	.	A	G	1987	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.92;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2020,225,0
chrXIII	654902	.	T	C	1635	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.46;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1668,180,0
chrXIII	654983	.	T	C	1229	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=17.56;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1262,138,0
chrXIII	655051	.	G	A	1868	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.91;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1901,201,0
chrXIII	655922	.	A	G	2127	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.65;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2160,237,0
chrXIII	655948	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.66;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2120,231,0
chrXIII	656131	.	A	G	857	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.55;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:96:890,96,0
chrXIII	656137	.	T	C	856	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=22.53;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:889,102,0
chrXIII	657064	.	G	A	2293	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.93;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2326,249,0
chrXIII	657240	.	G	C	637	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=17.22;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:670,72,0
chrXIII	657241	.	C	A	659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=3.378;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=0.234;QD=17.81;ReadPosRankSum=-0.796;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:75:692,75,0
chrXIII	657406	.	G	A	1529	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.86;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1562,168,0
chrXIII	657916	.	T	C	1139	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.78;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1172,129,0
chrXIII	658093	.	G	T	1906	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=88;Dels=0.00;FS=6.145;HaplotypeScore=5.3633;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.207;QD=21.66;ReadPosRankSum=1.495;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1939,204,0
chrXIII	658298	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.77;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2101,228,0
chrXIII	658377	.	G	A	2061	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.47;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2094,225,0
chrXIII	658644	.	T	C	1857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.462;QD=20.63;ReadPosRankSum=1.694;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1890,210,0
chrXIII	658659	.	T	A	1935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=0.993;QD=21.74;ReadPosRankSum=-0.798;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1968,219,0
chrXIII	659437	.	C	T	3306.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.4982;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.61;SB=-1.699e+03	GT:AD:DP:GQ:PL	1/1:0,151:153:99:3306,351,0
chrXIII	659450	.	T	C	2783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=0.794;QD=20.77;ReadPosRankSum=1.654;SB=-1.421e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:2816,309,0
chrXIII	659686	.	C	T	2873	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=21.93;SB=-1.338e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2906,309,0
chrXIII	659687	.	A	G	2792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=131;Dels=0.02;FS=0.000;HaplotypeScore=6.5877;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;MQRankSum=-0.541;QD=21.31;ReadPosRankSum=1.705;SB=-1.341e+03	GT:AD:DP:GQ:PL	1/1:1,127:129:99:2825,312,0
chrXIII	659727	.	A	G	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=106;Dels=0.00;FS=3.033;HaplotypeScore=10.5648;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=0.527;QD=18.85;ReadPosRankSum=2.403;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:2,103:106:99:2031,228,0
chrXIII	659982	.	A	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.11;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1426,156,0
chrXIII	660011	.	T	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.70;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1503,159,0
chrXIII	661113	.	A	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.27;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1513,156,0
chrXIII	661121	.	A	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=17.39;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1320,144,0
chrXIII	661143	.	C	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.10;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1408,147,0
chrXIII	661308	.	G	A	2449	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.6694;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=24.99;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2482,258,0
chrXIII	661371	.	A	G	1730	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.76;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1763,192,0
chrXIII	661378	.	A	G	1647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=4.137;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.445;QD=23.53;ReadPosRankSum=1.683;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1680,177,0
chrXIII	661472	.	G	T	1832	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.82;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1865,201,0
chrXIII	661638	.	A	C	1882	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.91;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1915,210,0
chrXIII	661676	.	T	C	1903	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.68;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1936,219,0
chrXIII	661718	.	A	G	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;DP=93;Dels=0.00;FS=2.608;HaplotypeScore=7.4707;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=1.337;QD=18.32;ReadPosRankSum=2.859;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:3,90:93:99:1737,195,0
chrXIII	661764	.	G	A	1910	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.95;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1943,207,0
chrXIII	661857	.	A	T	1352	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=19.59;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1385,153,0
chrXIII	661975	.	C	T	928	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=16.00;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:961,102,0
chrXIII	662294	.	T	C	1167	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.47;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1200,135,0
chrXIII	662466	.	T	C	1064	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.70;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1097,123,0
chrXIII	662603	.	C	T	2039	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.27;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2072,222,0
chrXIII	662775	.	A	G	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=73;Dels=0.00;FS=3.461;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.049;QD=21.40;ReadPosRankSum=1.635;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:1,70:73:99:1595,177,0
chrXIII	662886	.	A	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.59;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1440,156,0
chrXIII	663000	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0181;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.773;QD=21.06;ReadPosRankSum=1.412;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1423,140,0
chrXIII	663189	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.48;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1455,159,0
chrXIII	663441	.	T	C	1770	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.33;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1803,204,0
chrXIII	663903	.	T	C	2040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=105;Dels=0.00;FS=2.922;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.243;QD=19.43;ReadPosRankSum=2.402;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:2,102:105:99:2073,228,0
chrXIII	664122	.	A	C	2210	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=109;Dels=0.00;FS=6.817;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.102;QD=20.28;ReadPosRankSum=2.405;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:2,107:109:99:2243,249,0
chrXIII	664466	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.38;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1777,195,0
chrXIII	664741	.	A	G	2021	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.97;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2054,231,0
chrXIII	664811	.	A	G	1532	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8811;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.28;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1565,171,0
chrXIII	665349	.	C	T	1982	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.65;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2015,213,0
chrXIII	665423	.	C	T	1659	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.0381;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.07;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1692,186,0
chrXIII	665710	.	A	G	1634	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=21.22;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1667,180,0
chrXIII	665727	.	C	A	1886	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=22.19;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1919,198,0
chrXIII	666112	.	T	C	1072	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5219;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=16.75;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1105,120,0
chrXIII	666667	.	C	T	1434	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.41;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1467,156,0
chrXIII	667024	.	G	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.36;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1682,183,0
chrXIII	667173	.	G	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.93;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1283,141,0
chrXIII	667277	.	C	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.69;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1096,117,0
chrXIII	667295	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.299;DP=58;Dels=0.00;FS=8.718;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=0.660;QD=20.90;ReadPosRankSum=3.299;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:4,54:58:99:1245,135,0
chrXIII	667318	.	C	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.73;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1277,144,0
chrXIII	667456	.	A	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.70;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1333,147,0
chrXIII	667766	.	G	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0890;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.84;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1471,156,0
chrXIII	668276	.	C	T	142.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=17.77;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:175,18,0
chrXIII	668408	.	A	G	486	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,21:22:60:519,60,0
chrXIII	669285	.	A	C	1312	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.298;DP=66;Dels=0.00;FS=6.226;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.513;QD=19.88;ReadPosRankSum=2.374;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:1345,147,0
chrXIII	669310	.	T	C	1309	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.14;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1342,147,0
chrXIII	669355	.	C	T	1882	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.01;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.82;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1915,207,0
chrXIII	669472	.	T	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.71;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1196,129,0
chrXIII	669628	.	C	T	945	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.54;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:978,102,0
chrXIII	669658	.	A	T	1032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.892;QD=15.64;ReadPosRankSum=1.627;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1065,111,0
chrXIII	669672	.	T	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=17.33;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1194,126,0
chrXIII	670228	.	T	C	1501	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.01;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1534,168,0
chrXIII	670498	.	A	G	1798	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.567;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.565;QD=21.66;ReadPosRankSum=1.690;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1831,201,0
chrXIII	670546	.	C	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.56;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1909,201,0
chrXIII	671290	.	G	C	1111	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.21;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1144,123,0
chrXIII	671402	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.04;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1368,147,0
chrXIII	671526	.	G	C	1363	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.20;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1396,153,0
chrXIII	671728	.	T	C	2915	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=60.25;MQ0=0;QD=25.35;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2948,324,0
chrXIII	672129	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=6.532;HaplotypeScore=7.9177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.337;QD=15.08;ReadPosRankSum=1.684;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1134,129,0
chrXIII	672760	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=3.697;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.098;QD=19.60;ReadPosRankSum=1.690;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1660,186,0
chrXIII	673108	.	A	G	2271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.00;FS=3.819;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.601;QD=21.22;ReadPosRankSum=1.667;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:1,105:107:99:2304,252,0
chrXIII	673147	.	T	A	2223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.6457;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.889;QD=19.85;ReadPosRankSum=1.701;SB=-1.327e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2256,246,0
chrXIII	673402	.	G	A	2240	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2574;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.86;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2273,237,0
chrXIII	673803	.	A	G	1916	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.634;DP=94;Dels=0.00;FS=13.890;HaplotypeScore=12.3046;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.500;QD=20.38;ReadPosRankSum=2.034;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:3,88:94:99:1949,216,0
chrXIII	673846	.	A	G	1975	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.70;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2008,225,0
chrXIII	673975	.	G	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1509,168,0
chrXIII	674192	.	A	G	1853	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.0255;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.10;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1886,210,0
chrXIII	674283	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.71;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1472,162,0
chrXIII	674833	.	G	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.42;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1412,147,0
chrXIII	675083	.	A	C	1301	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=2.8909;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.43;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1334,150,0
chrXIII	675245	.	G	C	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.115;DP=74;Dels=0.00;FS=4.831;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.590;QD=21.82;ReadPosRankSum=-1.305;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1648,180,0
chrXIII	675362	.	G	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.17;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1894,198,0
chrXIII	675611	.	T	C	1872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=4.130;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.102;QD=21.27;ReadPosRankSum=1.693;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1905,207,0
chrXIII	675922	.	C	T	2025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.209;DP=91;Dels=0.00;FS=4.677;HaplotypeScore=11.0026;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.656;QD=22.25;ReadPosRankSum=1.618;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2058,222,0
chrXIII	676024	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=19.33;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1251,135,0
chrXIII	676154	.	G	C	1468	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.32;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1501,162,0
chrXIII	676329	.	G	A	1746	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6155;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.04;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1779,192,0
chrXIII	676414	.	A	G	933	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=18.29;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:966,108,0
chrXIII	676426	.	C	T	1025	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=15.77;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1058,117,0
chrXIII	676447	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=16.23;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1185,129,0
chrXIII	677046	.	C	T	2781	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.01;FS=0.000;HaplotypeScore=21.3409;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=16.36;SB=-2.026e+03	GT:AD:DP:GQ:PL	1/1:0,165:169:99:2814,300,0
chrXIII	677544	.	A	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.46;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1233,135,0
chrXIII	677619	.	G	A	1737	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.74;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1770,192,0
chrXIII	678111	.	C	T	1975	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.5811;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.51;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2008,210,0
chrXIII	678210	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=4.638;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.299;QD=21.57;ReadPosRankSum=1.570;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1435,156,0
chrXIII	678831	.	G	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.34;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1317,141,0
chrXIII	679230	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=76;Dels=0.00;FS=11.515;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.240;QD=17.82;ReadPosRankSum=2.908;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1387,150,0
chrXIII	680380	.	T	C	946	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.52;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:979,105,0
chrXIII	680399	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.03;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1335,144,0
chrXIII	680675	.	G	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.23;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1434,150,0
chrXIII	680769	.	T	C	2406	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=24.30;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2439,258,0
chrXIII	680903	.	C	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.56;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1246,132,0
chrXIII	680936	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;MQRankSum=0.760;QD=18.77;ReadPosRankSum=1.672;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1103,120,0
chrXIII	680940	.	C	G	1062	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.41;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1095,120,0
chrXIII	681495	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.36;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1762,189,0
chrXIII	681830	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.47;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1513,171,0
chrXIII	682194	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4116;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.91;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1293,141,0
chrXIII	682560	.	G	A	1766	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.07;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1799,201,0
chrXIII	682641	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.99;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1838,195,0
chrXIII	683655	.	T	C	2172	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.11;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:2205,240,0
chrXIII	683958	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.9858;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.96;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1937,204,0
chrXIII	684156	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.28;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1331,141,0
chrXIII	684220	.	A	G	1278	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.61;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1311,147,0
chrXIII	684406	.	A	T	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0258;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=0.139;QD=21.28;ReadPosRankSum=1.692;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1906,201,0
chrXIII	684520	.	A	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.57;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1545,171,0
chrXIII	684697	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.36;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1336,138,0
chrXIII	684700	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.22;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1263,132,0
chrXIII	685585	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.22;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1731,183,0
chrXIII	686772	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.59;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1440,153,0
chrXIII	687199	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.00;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1545,159,0
chrXIII	687331	.	C	T	1656	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.51;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1689,174,0
chrXIII	687431	.	C	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.01;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1573,171,0
chrXIII	687551	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.93;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1310,144,0
chrXIII	688004	.	G	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.74;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1070,117,0
chrXIII	688023	.	G	A	1054	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.96;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1087,114,0
chrXIII	688238	.	C	T	831	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.31;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:90:864,90,0
chrXIII	688319	.	T	C	669	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=3.399;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.149;QD=19.11;ReadPosRankSum=1.634;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:78:702,78,0
chrXIII	688379	.	A	G	1022	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.86;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1055,114,0
chrXIII	688991	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=60.1785;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-1.245;QD=20.27;ReadPosRankSum=1.678;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1330,144,0
chrXIII	689061	.	A	T	1691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.733;DP=89;Dels=0.00;FS=24.643;HaplotypeScore=4.5111;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;MQRankSum=-0.241;QD=19.00;ReadPosRankSum=3.733;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:5,84:89:99:1724,186,0
chrXIII	689079	.	A	C	1922	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=20.67;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1955,216,0
chrXIII	689429	.	C	G	1573	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=19.18;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1606,177,0
chrXIII	689462	.	T	A	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.895;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-1.098;QD=20.38;ReadPosRankSum=1.683;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1480,159,0
chrXIII	690036	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=78;Dels=0.00;FS=15.185;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.976;QD=22.26;ReadPosRankSum=2.387;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1769,201,0
chrXIII	690172	.	A	G	793	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=13.91;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,51:57:90:826,90,0
chrXIII	690252	.	G	A	2391	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.54;SB=-1.423e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2424,255,0
chrXIII	690671	.	G	A	1959	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.2844;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.62;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1992,207,0
chrXIII	690710	.	A	T	1710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.606;QD=21.37;ReadPosRankSum=1.689;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1743,189,0
chrXIII	691064	.	A	T	1970	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=13.3963;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.41;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2003,216,0
chrXIII	691343	.	A	G	1582	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.7640;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.562;QD=21.38;ReadPosRankSum=1.592;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1615,180,0
chrXIII	691697	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.655;QD=21.29;ReadPosRankSum=1.685;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1630,174,0
chrXIII	691745	.	G	A	2199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;DP=106;Dels=0.00;FS=2.910;HaplotypeScore=18.2229;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.410;QD=20.75;ReadPosRankSum=1.770;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:2,103:106:99:2232,243,0
chrXIII	691787	.	A	G	2337	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.69;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2370,258,0
chrXIII	691867	.	T	C	1319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.773;QD=20.29;ReadPosRankSum=1.679;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1352,150,0
chrXIII	691976	.	T	C	1683	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=21.30;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1716,186,0
chrXIII	692015	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.81;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1698,177,0
chrXIII	692042	.	C	A	1665	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=22.50;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1698,177,0
chrXIII	692398	.	C	T	909	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=15.95;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:942,99,0
chrXIII	692417	.	A	G	987	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=0.687;QD=15.18;ReadPosRankSum=1.677;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:99:1020,111,0
chrXIII	692624	.	G	A	2407	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=22.92;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2440,276,0
chrXIII	692823	.	G	A	1570	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=19.87;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1603,165,0
chrXIII	692846	.	G	A	1374	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=17.17;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1407,147,0
chrXIII	692849	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=16.35;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1390,150,0
chrXIII	692858	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=16.42;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1412,153,0
chrXIII	693184	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=23.05;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1485,156,0
chrXIII	693249	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=22.17;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1341,141,0
chrXIII	693352	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.89;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1725,195,0
chrXIII	693410	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.59;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1083,120,0
chrXIII	693754	.	C	T	958	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.11;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:991,105,0
chrXIII	694233	.	T	C	874	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.00;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:907,99,0
chrXIII	694403	.	C	A	897	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.69;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:930,99,0
chrXIII	694404	.	T	C	885	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.44;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:918,99,0
chrXIII	694629	.	C	T	955	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.22;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:988,105,0
chrXIII	694654	.	G	C	676	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=16.10;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:709,75,0
chrXIII	694691	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=20.08;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1258,135,0
chrXIII	694961	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1937;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=17.57;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1597,177,0
chrXIII	694967	.	T	A	1727	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.2486;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;MQRankSum=-0.780;QD=18.98;ReadPosRankSum=1.656;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1760,186,0
chrXIII	695123	.	A	G	1603	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=17.81;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1636,177,0
chrXIII	695300	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.97;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1683,180,0
chrXIII	695433	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=77;Dels=0.00;FS=13.612;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=2.169;QD=20.01;ReadPosRankSum=3.225;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:4,73:77:99:1574,148,0
chrXIII	695535	.	T	C	1021	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=48;Dels=0.02;FS=5.166;HaplotypeScore=3.9109;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.657;QD=21.27;ReadPosRankSum=1.657;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:99:1054,114,0
chrXIII	695622	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=2.609;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.051;QD=22.34;ReadPosRankSum=2.885;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:3,58:61:99:1396,153,0
chrXIII	695793	.	A	G	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=1.353;QD=16.73;ReadPosRankSum=1.685;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1254,138,0
chrXIII	695805	.	G	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.82;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1245,132,0
chrXIII	696003	.	A	G	1426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.483;QD=23.38;ReadPosRankSum=1.675;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1459,153,0
chrXIII	696776	.	T	C	2015	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.57;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2048,222,0
chrXIII	697520	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=18.70;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1323,144,0
chrXIII	697902	.	C	T	1856	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.75;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1889,198,0
chrXIII	697993	.	G	A	1709	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.35;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1742,192,0
chrXIII	698195	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.15;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1302,138,0
chrXIII	698244	.	A	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=15.56;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1091,123,0
chrXIII	698372	.	C	A	1004	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=17.02;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1037,108,0
chrXIII	698559	.	T	C	873	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=22.38;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:906,99,0
chrXIII	698569	.	A	G	652	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=18.63;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:75:685,75,0
chrXIII	698576	.	G	T	594	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=18.00;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:69:627,69,0
chrXIII	698667	.	A	G	1429	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.65;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1462,162,0
chrXIII	698822	.	T	A	1402	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.24;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1435,162,0
chrXIII	700452	.	T	A	1274	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.89;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1307,138,0
chrXIII	700491	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.53;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1325,141,0
chrXIII	701606	.	T	A	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.076;DP=88;Dels=0.00;FS=22.848;HaplotypeScore=16.7724;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=2.431;QD=16.86;ReadPosRankSum=4.341;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:8,80:88:99:1517,162,0
chrXIII	702047	.	G	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=18.35;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1336,144,0
chrXIII	702059	.	C	T	1542	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=21.72;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1575,168,0
chrXIII	702308	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.06;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1180,129,0
chrXIII	703483	.	A	G	805	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=22.36;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:93:838,93,0
chrXIII	703487	.	T	C	698	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=19.39;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:81:731,81,0
chrXIII	703489	.	A	G	726	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.17;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:84:759,84,0
chrXIII	703549	.	T	C	49.97	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=4.16;SB=-5.596e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:9:82,9,0
chrXIII	703558	.	A	G	46.97	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=12.5646;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=0;QD=3.91;SB=-5.697e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:9:79,9,0
chrXIII	703588	.	C	T	303	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=42.57;MQ0=0;QD=12.12;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:36:336,36,0
chrXIII	703828	.	A	G	1953	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=82;Dels=0.00;FS=4.228;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=1.567;QD=23.82;ReadPosRankSum=1.446;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:2,79:82:99:1986,216,0
chrXIII	703858	.	G	A	1657	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=18.01;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1690,177,0
chrXIII	703860	.	A	G	1586	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=92;Dels=0.00;FS=5.788;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=-1.047;QD=17.24;ReadPosRankSum=1.694;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1619,177,0
chrXIII	703913	.	T	G	1112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=4.586;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;MQRankSum=-0.929;QD=15.89;ReadPosRankSum=-0.477;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1145,126,0
chrXIII	703969	.	C	T	1209	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.49;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1242,138,0
chrXIII	703990	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.31;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1205,126,0
chrXIII	704140	.	C	T	2950	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.2381;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=22.18;SB=-1.676e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2983,321,0
chrXIII	704425	.	A	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.40;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1257,135,0
chrXIII	704551	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.53;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1365,144,0
chrXIII	704563	.	A	G	1263	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.85;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1296,144,0
chrXIII	704692	.	C	T	769	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=17.88;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:802,87,0
chrXIII	704704	.	T	C	677	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=15.04;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:78:710,78,0
chrXIII	704707	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=16.84;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:791,87,0
chrXIII	704739	.	T	G	577	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=14.79;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:610,69,0
chrXIII	704858	.	T	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.54;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1304,144,0
chrXIII	705104	.	C	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.19;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1177,123,0
chrXIII	705208	.	A	G	1629	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.3534;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.88;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1662,183,0
chrXIII	705271	.	A	G	1414	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=19.64;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1447,156,0
chrXIII	705286	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.61;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1373,147,0
chrXIII	705307	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.53;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1478,162,0
chrXIII	705665	.	G	A	1963	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=21.57;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1996,210,0
chrXIII	705679	.	T	C	1808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;MQRankSum=-0.905;QD=20.31;ReadPosRankSum=1.693;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1841,198,0
chrXIII	705697	.	G	A	1697	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=18.65;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1730,183,0
chrXIII	705701	.	A	C	1681	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=17.69;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1714,189,0
chrXIII	705940	.	C	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.5942;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.25;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1997,213,0
chrXIII	706063	.	A	G	1162	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=17.88;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1195,129,0
chrXIII	706072	.	G	A	1261	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=19.40;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1294,138,0
chrXIII	706102	.	T	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.66;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1624,168,0
chrXIII	706316	.	T	C	789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-1.247;QD=15.47;ReadPosRankSum=1.663;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:90:822,90,0
chrXIII	706357	.	A	G	703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.450;DP=50;Dels=0.00;FS=3.100;HaplotypeScore=5.2658;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=-0.601;QD=14.06;ReadPosRankSum=1.237;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:81:736,81,0
chrXIII	706360	.	C	T	745	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.4771;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;MQRankSum=-1.266;QD=14.33;ReadPosRankSum=1.466;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:81:778,81,0
chrXIII	706368	.	T	G	699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;MQRankSum=-1.257;QD=13.71;ReadPosRankSum=1.597;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:81:732,81,0
chrXIII	706399	.	T	G	704	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7273;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=13.54;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:737,81,0
chrXIII	706506	.	C	T	1409	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=22.02;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1442,153,0
chrXIII	706931	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=16.93;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1218,135,0
chrXIII	706935	.	T	C	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.203;QD=16.82;ReadPosRankSum=1.636;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1244,135,0
chrXIII	707030	.	A	G	1587	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.35;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1620,177,0
chrXIII	707109	.	C	T	2004	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.77;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2037,216,0
chrXIII	707180	.	A	T	2015	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.16;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2048,216,0
chrXIII	707281	.	A	G	1688	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=4.424;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.107;QD=23.44;ReadPosRankSum=1.636;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1721,189,0
chrXIII	707429	.	G	A	2604	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=25.04;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2637,273,0
chrXIII	707624	.	T	C	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;MQRankSum=1.039;QD=20.58;ReadPosRankSum=1.691;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:1,84:88:99:1844,201,0
chrXIII	707917	.	G	A	1723	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.28;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1756,186,0
chrXIII	708061	.	G	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=19.72;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1591,171,0
chrXIII	708064	.	C	A	1448	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=19.31;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1481,156,0
chrXIII	708117	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=41.86;MQ0=0;QD=16.33;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1062,114,0
chrXIII	708126	.	A	G	891	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9226;MLEAC=2;MLEAF=1.00;MQ=39.42;MQ0=0;QD=13.71;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:924,105,0
chrXIII	708130	.	T	C	1012	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=4.914;HaplotypeScore=2.7113;MLEAC=2;MLEAF=1.00;MQ=37.56;MQ0=0;MQRankSum=-1.732;QD=16.32;ReadPosRankSum=1.676;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1045,111,0
chrXIII	708165	.	A	C	987	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=16.18;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1020,111,0
chrXIII	708169	.	T	C	971	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=15.66;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1004,108,0
chrXIII	708177	.	A	G	960	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=15.00;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:993,108,0
chrXIII	708242	.	G	A	871	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=15.02;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:96:904,96,0
chrXIII	708248	.	A	T	830	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=15.66;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:96:863,96,0
chrXIII	708259	.	C	A	924	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=17.77;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:957,102,0
chrXIII	708336	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.12;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1449,153,0
chrXIII	708449	.	G	A	1073	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=24.95;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1106,117,0
chrXIII	708515	.	A	G	832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=3.445;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=1.238;QD=19.81;ReadPosRankSum=1.650;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:96:865,96,0
chrXIII	708535	.	C	G	781	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=17.75;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:814,90,0
chrXIII	708648	.	G	A	1006	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.86;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1039,111,0
chrXIII	708659	.	T	C	976	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=20.77;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1009,111,0
chrXIII	708678	.	G	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=22.20;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1054,111,0
chrXIII	708752	.	C	T	930	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.63;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:963,102,0
chrXIII	708816	.	G	A	891	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.25;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:924,96,0
chrXIII	708850	.	G	A	978	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.73;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1011,105,0
chrXIII	708880	.	C	T	841	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.56;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:90:874,90,0
chrXIII	708913	.	G	A	937	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.79;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:970,99,0
chrXIII	709000	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=2.800;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.985;QD=21.93;ReadPosRankSum=2.359;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1217,135,0
chrXIII	709047	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.54;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,53:56:99:1295,144,0
chrXIII	709130	.	C	G	1553	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.53;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1586,177,0
chrXIII	709221	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.11;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1464,165,0
chrXIII	709259	.	A	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=23.51;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1373,147,0
chrXIII	709343	.	C	T	1033	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.96;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1066,111,0
chrXIII	709368	.	G	A	640	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.29;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:69:673,69,0
chrXIII	709513	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.73;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1828,192,0
chrXIII	709549	.	G	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.61;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1654,180,0
chrXIII	709571	.	G	A	1583	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.68;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1616,171,0
chrXIII	709740	.	T	C	941	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.95;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:974,108,0
chrXIII	709763	.	T	C	935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;MQRankSum=-1.168;QD=21.74;ReadPosRankSum=1.652;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:968,108,0
chrXIII	709817	.	C	T	1251	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.95;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1284,141,0
chrXIII	709860	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.92;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1706,186,0
chrXIII	709938	.	G	A	1082	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.98;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1115,117,0
chrXIII	709940	.	A	C	1078	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.60;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1111,123,0
chrXIII	709983	.	G	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.71;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1531,162,0
chrXIII	710039	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.42;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1580,168,0
chrXIII	710067	.	G	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.68;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1326,141,0
chrXIII	710099	.	C	T	870	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=18.51;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:96:903,96,0
chrXIII	710133	.	A	G	807	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=17.54;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:840,93,0
chrXIII	710137	.	A	G	832	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=18.09;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:96:865,96,0
chrXIII	710293	.	C	T	1522	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=23.42;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1555,171,0
chrXIII	710381	.	T	C	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.173;QD=22.68;ReadPosRankSum=1.676;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1439,159,0
chrXIII	710402	.	G	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.59;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1186,126,0
chrXIII	710470	.	C	T	646	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=16.56;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:679,72,0
chrXIII	710608	.	A	C	1691	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.68;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1724,195,0
chrXIII	710752	.	T	C	1443	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.55;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1476,162,0
chrXIII	710845	.	G	A	584	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=15.78;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:66:617,66,0
chrXIII	710880	.	T	A	933	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.04;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:966,105,0
chrXIII	710897	.	A	C	979	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=19.98;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1012,111,0
chrXIII	711019	.	T	G	1285	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.08;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1318,144,0
chrXIII	711139	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.85;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1305,144,0
chrXIII	711514	.	A	G	1558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.137;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.891;QD=21.64;ReadPosRankSum=1.683;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1591,171,0
chrXIII	711575	.	G	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2489;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.51;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1514,159,0
chrXIII	711900	.	A	G	1679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.222;QD=21.53;ReadPosRankSum=1.643;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1712,186,0
chrXIII	712021	.	G	A	529	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.5317;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.35;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:60:562,60,0
chrXIII	712271	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.5113;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.83;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1791,198,0
chrXIII	712385	.	A	C	1001	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=-1.299;QD=17.87;ReadPosRankSum=1.609;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1034,114,0
chrXIII	712387	.	A	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.08;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1044,117,0
chrXIII	712461	.	G	A	1872	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.02;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1905,198,0
chrXIII	712539	.	G	C	1959	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.26;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1992,219,0
chrXIII	712621	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3159;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.06;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1432,159,0
chrXIII	712702	.	T	C	1646	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.294;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.241;QD=20.84;ReadPosRankSum=1.688;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1679,186,0
chrXIII	712889	.	G	T	1415	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.12;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1448,150,0
chrXIII	713054	.	G	A	1320	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.00;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1353,147,0
chrXIII	713074	.	T	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.46;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1322,147,0
chrXIII	713194	.	A	G	1028	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.5522;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.87;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1061,117,0
chrXIII	713537	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.84;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1429,156,0
chrXIII	713573	.	A	G	1243	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.05;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1276,141,0
chrXIII	713731	.	A	C	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.770;QD=21.06;ReadPosRankSum=1.668;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1170,129,0
chrXIII	713803	.	T	G	1529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.278;QD=18.88;ReadPosRankSum=0.748;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1562,177,0
chrXIII	713828	.	C	T	2039	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0613;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.39;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2072,219,0
chrXIII	713912	.	T	G	2215	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.89;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2248,246,0
chrXIII	713980	.	G	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.5066;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.40;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1601,171,0
chrXIII	714945	.	C	T	1804	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.22;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1837,201,0
chrXIII	715098	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.628;QD=20.54;ReadPosRankSum=1.632;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1450,156,0
chrXIII	715145	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1122;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.02;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1398,150,0
chrXIII	715257	.	T	C	2734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-1.145;QD=23.17;ReadPosRankSum=1.703;SB=-1.327e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2767,306,0
chrXIII	715590	.	A	T	2758	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=16.4963;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.38;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2791,291,0
chrXIII	715643	.	T	C	1913	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.51;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1946,210,0
chrXIII	715773	.	C	T	1304	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.71;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1337,144,0
chrXIII	715919	.	T	C	998	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.9033;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=18.83;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1031,114,0
chrXIII	715953	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.65;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1396,153,0
chrXIII	715971	.	G	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=16.32;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1241,132,0
chrXIII	716317	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=18.76;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,74:78:99:1496,159,0
chrXIII	716342	.	T	C	1681	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.9960;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.01;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1714,189,0
chrXIII	716382	.	T	C	3069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;DP=146;Dels=0.00;FS=16.316;HaplotypeScore=5.0668;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=-1.205;QD=21.02;ReadPosRankSum=3.279;SB=-1.456e+03	GT:AD:DP:GQ:PL	1/1:4,142:146:99:3102,336,0
chrXIII	716541	.	G	T	1916	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.9110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1949,213,0
chrXIII	716720	.	C	T	1771	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.36;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1804,195,0
chrXIII	717629	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=7.468;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.165;QD=19.33;ReadPosRankSum=2.360;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1618,174,0
chrXIII	718241	.	C	T	2528	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.85;SB=-1.473e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2561,264,0
chrXIII	718391	.	T	C	1058	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=17.34;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1091,120,0
chrXIII	718396	.	A	G	1023	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.20;MQ0=0;QD=16.50;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1056,117,0
chrXIII	718423	.	G	A	888	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=13.25;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:921,99,0
chrXIII	718428	.	T	C	793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.658;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;MQRankSum=-1.519;QD=12.20;ReadPosRankSum=1.626;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:93:826,93,0
chrXIII	718456	.	A	C	1123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=1.301;QD=15.38;ReadPosRankSum=2.349;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1156,126,0
chrXIII	718505	.	A	G	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.626;QD=19.02;ReadPosRankSum=1.661;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1897,207,0
chrXIII	718511	.	T	C	1880	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.43;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1913,210,0
chrXIII	718535	.	T	A	1792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=6.128;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.929;QD=21.33;ReadPosRankSum=1.690;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1825,189,0
chrXIII	718632	.	T	A	1901	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.76;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1934,204,0
chrXIII	718645	.	C	T	1318	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.12;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1351,141,0
chrXIII	718679	.	G	A	1073	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=8.6440;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.04;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1106,117,0
chrXIII	718763	.	T	C	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.225;QD=21.59;ReadPosRankSum=2.330;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1803,195,0
chrXIII	718938	.	T	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=17.42;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1392,150,0
chrXIII	718973	.	G	A	1661	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.57;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1694,174,0
chrXIII	719076	.	A	G	851	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=16.06;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:884,99,0
chrXIII	719499	.	A	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.93;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1205,132,0
chrXIII	719516	.	G	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.17;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1134,120,0
chrXIII	719811	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.73;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1663,183,0
chrXIII	720435	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.56;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1494,159,0
chrXIII	721068	.	T	C	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.037;QD=20.64;ReadPosRankSum=0.663;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1973,216,0
chrXIII	721309	.	A	T	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.976;QD=19.90;ReadPosRankSum=1.653;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1764,198,0
chrXIII	721409	.	A	C	1626	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=19.83;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1659,186,0
chrXIII	721557	.	A	G	1489	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8643;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.507;QD=18.16;ReadPosRankSum=1.648;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1522,168,0
chrXIII	721563	.	A	G	1517	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=-0.619;QD=17.64;ReadPosRankSum=1.691;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:1,83:86:99:1550,171,0
chrXIII	721591	.	G	T	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4102;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.909;QD=17.87;ReadPosRankSum=1.559;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1463,153,0
chrXIII	721626	.	G	A	1214	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.59;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1247,129,0
chrXIII	721694	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.21;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1823,192,0
chrXIII	721872	.	C	G	1086	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=17.24;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1119,126,0
chrXIII	721887	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.60;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1142,120,0
chrXIII	722430	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=20.44;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1423,150,0
chrXIII	722436	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.23;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1309,138,0
chrXIII	722506	.	G	C	2106	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.4974;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.47;SB=-1.448e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2139,231,0
chrXIII	722556	.	C	G	4004.01	PASS	AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=6.4275;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.07;SB=-2.435e+03	GT:AD:DP:GQ:PL	1/1:0,189:190:99:4004,432,0
chrXIII	723405	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=17.31;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1210,132,0
chrXIII	723430	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=18.58;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1185,126,0
chrXIII	723720	.	G	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=15.89;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1368,150,0
chrXIII	723721	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=17.41;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1461,153,0
chrXIII	723828	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=3.925;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=-1.118;QD=20.46;ReadPosRankSum=1.644;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1670,189,0
chrXIII	723996	.	T	C	1455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.316;QD=19.40;ReadPosRankSum=1.686;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1488,162,0
chrXIII	724434	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=5.2993;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.597;QD=19.69;ReadPosRankSum=1.552;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1549,171,0
chrXIII	724793	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.63;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1323,147,0
chrXIII	724837	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.55;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1334,141,0
chrXIII	725177	.	A	G	1282	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1315,147,0
chrXIII	725726	.	G	A	1654	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.30;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1687,180,0
chrXIII	726417	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.35;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1356,150,0
chrXIII	726963	.	G	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.51;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1181,126,0
chrXIII	727057	.	A	G	1104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.318;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.403;QD=15.12;ReadPosRankSum=1.685;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1137,126,0
chrXIII	727058	.	C	T	1110	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=15.42;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1143,123,0
chrXIII	727303	.	C	T	1630	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=25.47;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1663,174,0
chrXIII	727646	.	G	A	1486	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.30;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1519,156,0
chrXIII	727763	.	A	G	1625	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=73;Dels=0.00;FS=2.835;HaplotypeScore=6.8951;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.253;QD=22.26;ReadPosRankSum=2.146;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1658,183,0
chrXIII	727917	.	A	G	1385	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=19.51;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1418,159,0
chrXIII	727920	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=19.93;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1408,150,0
chrXIII	727934	.	C	T	1455	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=19.66;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1488,165,0
chrXIII	728296	.	T	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.68;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1269,141,0
chrXIII	729020	.	G	C	1086	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.6524;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.52;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1119,123,0
chrXIII	729284	.	T	C	1535	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.244;QD=21.62;ReadPosRankSum=1.683;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1568,171,0
chrXIII	729654	.	C	T	1800	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1833,195,0
chrXIII	729711	.	T	C	1568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.866;QD=21.78;ReadPosRankSum=1.588;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1601,177,0
chrXIII	729828	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.72;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1532,159,0
chrXIII	729862	.	C	T	1487	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.53;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1520,159,0
chrXIII	729976	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.183;DP=74;Dels=0.00;FS=2.932;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.750;QD=20.69;ReadPosRankSum=2.283;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1564,171,0
chrXIII	730384	.	A	G	1626	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.85;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1659,180,0
chrXIII	730533	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.87;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1348,150,0
chrXIII	730842	.	C	T	1723	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.54;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1756,186,0
chrXIII	731422	.	A	G	1338	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.91;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1371,150,0
chrXIII	731537	.	T	C	2587	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.30;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2620,285,0
chrXIII	731576	.	A	G	2566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.7480;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.547;QD=22.91;ReadPosRankSum=1.639;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2599,285,0
chrXIII	732373	.	A	G	2183	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=23.73;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2216,243,0
chrXIII	732395	.	T	C	2301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2181;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=1.626;QD=23.48;ReadPosRankSum=1.661;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2334,252,0
chrXIII	732621	.	G	T	1569	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.14;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1602,168,0
chrXIII	732658	.	A	G	1834	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.15;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1867,204,0
chrXIII	732675	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.56;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1666,177,0
chrXIII	732688	.	A	G	1725	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.4715;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=16.91;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1758,195,0
chrXIII	734239	.	C	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.63;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1585,171,0
chrXIII	734324	.	A	C	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.205;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.644;QD=24.11;ReadPosRankSum=1.688;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1938,213,0
chrXIII	734392	.	T	C	2027	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.42;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2060,231,0
chrXIII	734558	.	A	G	2501	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.16;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2534,276,0
chrXIII	734679	.	C	T	3118	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=6.2140;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=24.94;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3151,327,0
chrXIII	734873	.	G	A	2523	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.13;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2556,276,0
chrXIII	735107	.	T	C	2785	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=124;Dels=0.00;FS=4.500;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.034;QD=22.46;ReadPosRankSum=1.648;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2818,303,0
chrXIII	735170	.	G	A	2442	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.9244;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.80;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2475,267,0
chrXIII	735372	.	G	A	1483	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1516,156,0
chrXIII	735474	.	G	C	1700	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4046;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.10;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1733,189,0
chrXIII	735876	.	A	G	1784	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.30;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1817,204,0
chrXIII	736200	.	A	T	1586	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.44;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1619,171,0
chrXIII	736201	.	C	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.11;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1572,171,0
chrXIII	736533	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.92;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1811,195,0
chrXIII	736827	.	G	A	1810	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8729;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.13;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1843,192,0
chrXIII	736875	.	G	A	2011	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2698;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.86;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2044,213,0
chrXIII	737093	.	C	T	1697	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0653;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.90;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1730,183,0
chrXIII	737201	.	A	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.49;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1184,129,0
chrXIII	737273	.	C	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.62;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1481,156,0
chrXIII	737293	.	C	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=22.00;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1771,189,0
chrXIII	737381	.	T	G	2608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=-0.341;QD=21.20;ReadPosRankSum=1.704;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,121:123:99:2641,288,0
chrXIII	737389	.	T	C	2540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;MQRankSum=0.616;QD=20.99;ReadPosRankSum=1.675;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2573,282,0
chrXIII	737462	.	G	A	1246	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.12;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1279,135,0
chrXIII	737485	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.67;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1393,144,0
chrXIII	737552	.	A	G	1081	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.20;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1114,123,0
chrXIII	737651	.	A	G	2307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.4264;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=0.033;QD=21.56;ReadPosRankSum=1.699;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,105:107:99:2340,242,0
chrXIII	737933	.	C	G	1655	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.49;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1688,189,0
chrXIII	738269	.	G	A	1913	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.51;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1946,201,0
chrXIII	738517	.	C	T	1850	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=21.26;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1883,198,0
chrXIII	738561	.	G	A	1613	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=22.40;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1646,174,0
chrXIII	738563	.	T	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=21.59;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1609,177,0
chrXIII	738608	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.28;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1294,141,0
chrXIII	738674	.	C	A	1513	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.91;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1546,177,0
chrXIII	738824	.	C	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1492,156,0
chrXIII	739012	.	T	C	1752	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1785,195,0
chrXIII	739150	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.713;QD=21.25;ReadPosRankSum=-1.019;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1499,140,0
chrXIII	740011	.	G	A	2017	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.30;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2050,213,0
chrXIII	740037	.	C	T	1821	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.93;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1854,198,0
chrXIII	740188	.	G	A	2557	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=21.67;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2590,267,0
chrXIII	740191	.	G	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=22.11;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2531,264,0
chrXIII	740218	.	G	T	2493	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8775;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.68;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2526,264,0
chrXIII	740301	.	G	A	2720	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.48;SB=-1.360e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2753,291,0
chrXIII	740463	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.58;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1423,150,0
chrXIII	740583	.	T	C	1474	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=94;Dels=0.00;FS=10.859;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.569;QD=15.68;ReadPosRankSum=2.397;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:2,91:94:99:1507,171,0
chrXIII	740818	.	A	G	1894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=87;Dels=0.00;FS=12.739;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.696;QD=21.77;ReadPosRankSum=2.392;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:2,83:87:99:1927,219,0
chrXIII	741162	.	G	A	2256	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.34;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2289,237,0
chrXIII	741316	.	T	G	1574	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.321;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3046;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.689;QD=19.20;ReadPosRankSum=1.647;SB=-2.330e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1607,152,0
chrXIII	741779	.	A	G	1910	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.9166;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=19.10;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1943,213,0
chrXIII	741880	.	C	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.99;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1432,153,0
chrXIII	742214	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1571,168,0
chrXIII	742337	.	T	G	1547	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9392;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.49;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1580,168,0
chrXIII	742738	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.04;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1516,159,0
chrXIII	742757	.	G	C	1361	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=19.17;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1394,156,0
chrXIII	742863	.	A	G	2078	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.431;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-0.564;QD=23.89;ReadPosRankSum=1.692;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:2111,228,0
chrXIII	742901	.	T	C	1984	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.62;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:2017,222,0
chrXIII	742946	.	A	G	1445	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1478,162,0
chrXIII	743222	.	C	T	2032	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.73;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2065,219,0
chrXIII	743279	.	C	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.91;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1586,165,0
chrXIII	743500	.	C	A	1546	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.40;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1579,168,0
chrXIII	743510	.	G	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=17.86;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1551,165,0
chrXIII	743691	.	G	C	1144	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.43;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1177,126,0
chrXIII	743742	.	C	T	1502	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.47;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1535,162,0
chrXIII	743928	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7564;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.68;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1509,159,0
chrXIII	743991	.	T	C	1024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.599;QD=19.69;ReadPosRankSum=1.599;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1057,117,0
chrXIII	744231	.	C	T	1990	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2023,216,0
chrXIII	744270	.	C	T	2433	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.08;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2466,261,0
chrXIII	744435	.	T	A	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.5219;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.677;QD=21.52;ReadPosRankSum=1.622;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1389,159,0
chrXIII	744471	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.001;DP=66;Dels=0.00;FS=2.976;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=0.879;QD=20.06;ReadPosRankSum=2.375;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1357,147,0
chrXIII	744735	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=18.05;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1134,120,0
chrXIII	744855	.	T	C	1676	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=21.22;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1709,189,0
chrXIII	744882	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=17.68;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1536,162,0
chrXIII	744933	.	T	C	1720	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=17.55;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,94:98:99:1753,189,0
chrXIII	744937	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=18.28;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1733,183,0
chrXIII	744949	.	T	C	1723	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.21;MQ0=0;QD=18.14;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1756,189,0
chrXIII	744975	.	C	T	1792	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=19.06;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1825,189,0
chrXIII	744999	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.01;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1202,132,0
chrXIII	745005	.	C	T	1151	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=16.44;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1184,126,0
chrXIII	745236	.	G	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.98;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1616,171,0
chrXIII	745377	.	C	T	1613	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=24.07;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1646,171,0
chrXIII	745976	.	C	T	3282.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=16.6492;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.18;SB=-1.671e+03	GT:AD:DP:GQ:PL	1/1:0,147:148:99:3282,348,0
chrXIII	746043	.	C	T	2737	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.01;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2770,288,0
chrXIII	746072	.	G	C	1876	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.84;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1909,207,0
chrXIII	746108	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3838;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.216;QD=19.81;ReadPosRankSum=2.341;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:2,66:69:99:1400,153,0
chrXIII	746305	.	T	A	4097.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.533;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=9.5481;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.114;QD=22.15;ReadPosRankSum=-0.114;SB=-2.079e+03	GT:AD:DP:GQ:PL	1/1:1,184:185:99:4097,414,0
chrXIII	746448	.	T	C	1899	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9657;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.35;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1932,207,0
chrXIII	747051	.	T	C	1626	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1934;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.91;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1659,186,0
chrXIII	747252	.	C	T	2452	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.92;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2485,264,0
chrXIII	747330	.	T	C	1613	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.51;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1646,180,0
chrXIII	747492	.	G	A	1787	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.27;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1820,192,0
chrXIII	747765	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=82;Dels=0.00;FS=4.314;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.219;QD=19.05;ReadPosRankSum=1.604;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1595,174,0
chrXIII	747983	.	T	C	887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=3.478;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=0.672;QD=18.10;ReadPosRankSum=0.813;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:920,99,0
chrXIII	748010	.	G	A	998	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=19.96;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1031,108,0
chrXIII	748055	.	C	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.68;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1052,108,0
chrXIII	748185	.	G	T	609	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.29;MQ0=0;QD=8.58;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,71:71:69:642,69,0
chrXIII	748780	.	A	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.81;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1712,183,0
chrXIII	750116	.	A	G	744	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=16.53;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:777,87,0
chrXIII	750175	.	A	G	1092	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1125,123,0
chrXIII	750242	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.29;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1549,165,0
chrXIII	750679	.	G	A	2009	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.09;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2042,213,0
chrXIII	750743	.	G	A	1448	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=20.11;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1481,168,0
chrXIII	750755	.	T	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.99;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1256,138,0
chrXIII	750779	.	T	C	966	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=15.33;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:999,114,0
chrXIII	750782	.	G	A	942	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=14.95;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:975,105,0
chrXIII	750890	.	A	G	1378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.403;QD=18.88;ReadPosRankSum=1.685;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1411,159,0
chrXIII	750996	.	G	A	3039	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.74;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:3072,327,0
chrXIII	751063	.	C	T	1982	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3637;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.22;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2015,213,0
chrXIII	751101	.	C	T	1591	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5430;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.17;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1624,168,0
chrXIII	751163	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.30;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1088,117,0
chrXIII	751496	.	G	C	1235	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.43;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1268,138,0
chrXIII	751891	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.19;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1654,174,0
chrXIII	752227	.	T	G	969	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=16.71;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1002,111,0
chrXIII	752515	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=19.90;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1207,129,0
chrXIII	752521	.	T	G	1156	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.27;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1189,129,0
chrXIII	752985	.	C	A	539	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=18.59;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:63:572,63,0
chrXIII	753769	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1736,186,0
chrXIII	754342	.	G	C	1584	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1617,177,0
chrXIII	754411	.	T	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1624,174,0
chrXIII	754594	.	T	C	1608	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.0356;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.35;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1641,183,0
chrXIII	754630	.	T	C	2035	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.36;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2068,228,0
chrXIII	754796	.	A	T	2136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=5.921;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.886;QD=24.84;ReadPosRankSum=1.692;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2169,228,0
chrXIII	754906	.	C	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.11;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1535,159,0
chrXIII	754943	.	C	A	1768	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.67;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1801,186,0
chrXIII	755265	.	G	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.95;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1113,117,0
chrXIII	755483	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.44;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1321,141,0
chrXIII	755501	.	C	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.55;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1108,117,0
chrXIII	755741	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.54;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1368,153,0
chrXIII	755780	.	T	C	1474	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7421;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=18.66;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1507,168,0
chrXIII	755942	.	T	A	1504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.0994;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.137;QD=23.14;ReadPosRankSum=1.677;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1537,162,0
chrXIII	756198	.	A	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=17.84;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1157,123,0
chrXIII	756230	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=18.37;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1135,120,0
chrXIII	756433	.	G	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=23.30;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1291,141,0
chrXIII	756542	.	T	G	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.969;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=40.43;MQ0=0;MQRankSum=-0.565;QD=0.39;ReadPosRankSum=3.216;SB=-5.087e+02	GT:AD:DP:GQ:PL	1/1:5,42:48:6:50,6,0
chrXIII	756564	.	C	G	407	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.24;MQ0=0;QD=10.17;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:48:440,48,0
chrXIII	756565	.	A	C	402	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=9.14;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:48:435,48,0
chrXIII	756577	.	T	C	661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.651;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.46;MQ0=0;MQRankSum=-1.257;QD=12.96;ReadPosRankSum=1.664;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:78:694,78,0
chrXIII	756630	.	T	A	855	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=16.44;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:888,93,0
chrXIII	756660	.	A	T	769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-1.654;QD=17.48;ReadPosRankSum=1.654;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:87:802,87,0
chrXIII	756710	.	A	G	668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;DP=38;Dels=0.00;FS=3.016;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=-1.209;QD=17.58;ReadPosRankSum=2.321;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:2,36:38:78:701,78,0
chrXIII	756713	.	G	T	639	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.04;MQ0=0;QD=17.27;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:672,72,0
chrXIII	756979	.	A	T	227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.748;DP=38;Dels=0.00;FS=15.332;HaplotypeScore=14.4550;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;MQRankSum=1.578;QD=5.97;ReadPosRankSum=1.811;SB=-2.198e+02	GT:AD:DP:GQ:PL	1/1:11,27:38:30:260,30,0
chrXIII	756991	.	A	T	110.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;DP=42;Dels=0.05;FS=5.458;HaplotypeScore=3.5104;MLEAC=1;MLEAF=0.500;MQ=37.50;MQ0=0;MQRankSum=-1.523;QD=2.62;ReadPosRankSum=-4.032;SB=-1.380e+02	GT:AD:DP:GQ:PL	0/1:25,15:40:25:140,0,25
chrXIII	757086	.	A	T	2081	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.8991;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.65;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2114,222,0
chrXIII	757200	.	T	C	2622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;DP=109;Dels=0.00;FS=2.599;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;MQRankSum=-1.269;QD=24.06;ReadPosRankSum=2.936;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:3,106:109:99:2655,285,0
chrXIII	757281	.	T	C	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.278;QD=19.19;ReadPosRankSum=2.305;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:1990,225,0
chrXIII	757285	.	A	G	1969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=102;Dels=0.00;FS=4.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.069;QD=19.30;ReadPosRankSum=1.697;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,99:102:99:2002,222,0
chrXIII	757815	.	G	C	973	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.02;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1006,108,0
chrXIII	758570	.	G	C	1511	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.25;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,62:65:99:1544,168,0
chrXIII	759082	.	A	G	962	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=13.74;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:995,111,0
chrXIII	759711	.	A	G	1453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9094;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.060;QD=21.69;ReadPosRankSum=-1.577;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1486,168,0
chrXIII	761318	.	T	A	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.683;QD=21.07;ReadPosRankSum=1.683;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1529,168,0
chrXIII	761608	.	A	C	1586	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.661;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.644;QD=20.08;ReadPosRankSum=0.592;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1619,174,0
chrXIII	761656	.	A	G	1734	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.3836;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.16;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1767,192,0
chrXIII	761771	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3914;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.59;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1727,180,0
chrXIII	762321	.	C	T	1023	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.6834;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=15.50;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1056,108,0
chrXIII	763743	.	A	G	960	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.43;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:993,108,0
chrXIII	764499	.	C	A	2906	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=6.5111;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.85;SB=-1.476e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2939,318,0
chrXIII	764921	.	G	A	2076	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.9932;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.57;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2109,219,0
chrXIII	765091	.	T	C	1698	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.95;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1731,189,0
chrXIII	765121	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.340;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.084;QD=21.56;ReadPosRankSum=1.648;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1801,198,0
chrXIII	765682	.	T	C	1902	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.12;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1935,210,0
chrXIII	766039	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.385;QD=22.01;ReadPosRankSum=1.684;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1618,174,0
chrXIII	767798	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5173;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.23;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1287,144,0
chrXIII	768019	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.20;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1309,144,0
chrXIII	769127	.	G	C	3922.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=12.8983;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=24.82;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,157:158:99:3922,432,0
chrXIII	769653	.	A	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1805;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.93;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1707,183,0
chrXIII	770320	.	T	C	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.7722;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.412;QD=20.55;ReadPosRankSum=-1.199;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1389,150,0
chrXIII	770362	.	A	C	1655	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.31;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1688,183,0
chrXIII	770699	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7863;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.99;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1754,192,0
chrXIII	772660	.	T	G	317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.537;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=11.0820;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.627;QD=9.91;ReadPosRankSum=3.253;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:9,22:32:42:350,42,0
chrXIII	772718	.	A	G	715	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.86;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:81:748,81,0
chrXIII	773437	.	G	A	1745	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.81;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1778,189,0
chrXIII	774331	.	T	C	1157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;MQRankSum=-1.124;QD=20.30;ReadPosRankSum=1.672;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1190,132,0
chrXIII	774570	.	T	C	888	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.14;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:921,102,0
chrXIII	774688	.	T	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=17.65;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1639,174,0
chrXIII	774694	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;QD=17.57;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1597,174,0
chrXIII	774716	.	G	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=58.4551;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=15.73;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1433,156,0
chrXIII	774827	.	T	A	1427	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=25.04;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1460,153,0
chrXIII	775031	.	T	C	566	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=14.89;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,37:38:66:599,66,0
chrXIII	775628	.	A	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.28;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1441,150,0
chrXIII	777456	.	A	G	1953	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1986,216,0
chrXIII	780034	.	T	A	1983	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3408;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.03;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2016,213,0
chrXIII	781016	.	C	G	2212	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.53;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2245,246,0
chrXIII	784941	.	T	C	2223	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2256,249,0
chrXIII	785245	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.962;QD=22.61;ReadPosRankSum=1.677;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1480,162,0
chrXIII	785591	.	G	A	1871	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.27;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1904,201,0
chrXIII	788656	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.71;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1441,159,0
chrXIII	788971	.	A	G	760	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.54;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:87:793,87,0
chrXIII	789071	.	G	T	975	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1008,108,0
chrXIII	789101	.	G	A	651	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3924;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:72:684,72,0
chrXIII	789267	.	G	T	880	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.50;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:96:913,96,0
chrXIII	789347	.	G	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.52;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1068,114,0
chrXIII	789456	.	G	A	1096	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.37;SB=-1.370e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1129,120,0
chrXIII	789474	.	A	G	936	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.50;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:969,108,0
chrXIII	796580	.	C	T	1822	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=25.31;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1855,198,0
chrXIII	796818	.	C	T	1434	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1467,156,0
chrXIII	797885	.	G	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.55;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1137,129,0
chrXIII	798060	.	G	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.51;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1407,153,0
chrXIII	798063	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.35;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1378,150,0
chrXIII	798090	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.86;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:976,108,0
chrXIII	798447	.	T	A	1960	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.697;DP=90;Dels=0.00;FS=2.539;HaplotypeScore=6.9065;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=1.484;QD=21.78;ReadPosRankSum=0.629;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:3,87:90:99:1993,222,0
chrXIII	798450	.	C	G	2023	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.03;FS=0.000;HaplotypeScore=13.7993;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=21.52;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:2056,222,0
chrXIII	798485	.	T	G	1529	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=22.49;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,65:68:99:1562,168,0
chrXIII	798592	.	T	G	938	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.96;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:971,108,0
chrXIII	798593	.	T	G	941	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=20.02;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:974,105,0
chrXIII	798732	.	A	G	1113	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.24;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1146,126,0
chrXIII	798739	.	C	A	981	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.87;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1014,117,0
chrXIII	798826	.	C	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=15.81;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1045,108,0
chrXIII	798889	.	C	G	1129	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.47;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1162,132,0
chrXIII	799519	.	C	T	908	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.62;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:941,99,0
chrXIII	799605	.	T	C	765	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.66;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:798,87,0
chrXIII	799711	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5556;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.55;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1121,123,0
chrXIII	799763	.	A	C	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=2.892;HaplotypeScore=9.9157;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.834;QD=19.20;ReadPosRankSum=2.396;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1799,195,0
chrXIII	799825	.	A	G	1719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.263;DP=79;Dels=0.00;FS=10.116;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.016;QD=21.76;ReadPosRankSum=2.325;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1752,192,0
chrXIII	800212	.	T	C	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=-0.379;QD=18.33;ReadPosRankSum=1.678;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1206,132,0
chrXIII	800233	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=20.42;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1156,126,0
chrXIII	800264	.	G	A	983	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.5961;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.27;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1016,108,0
chrXIII	800350	.	G	A	1352	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=17.79;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1385,150,0
chrXIII	800368	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=16.14;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1292,141,0
chrXIII	800425	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.0367;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.59;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1446,165,0
chrXIII	800554	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.90;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1286,138,0
chrXIII	800561	.	A	G	1144	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=17.07;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1177,129,0
chrXIII	800671	.	T	C	1694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.6488;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.947;QD=22.29;ReadPosRankSum=1.686;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1727,189,0
chrXIII	800705	.	A	G	1861	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.2281;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=21.39;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1894,210,0
chrXIII	800812	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=8.957;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=0.874;QD=18.37;ReadPosRankSum=2.381;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1356,150,0
chrXIII	800816	.	A	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=16.31;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1305,144,0
chrXIII	800866	.	C	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.84;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1501,159,0
chrXIII	800900	.	T	G	1913	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=21.74;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1946,216,0
chrXIII	800977	.	A	G	1517	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=21.67;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1550,168,0
chrXIII	801034	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.571;DP=86;Dels=0.00;FS=3.112;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=-0.443;QD=16.98;ReadPosRankSum=1.370;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1493,141,0
chrXIII	801050	.	G	A	1655	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1894;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=17.99;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1688,186,0
chrXIII	801144	.	T	A	2024	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=19.46;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2057,228,0
chrXIII	801181	.	C	G	1038	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.71;MQ0=0;QD=13.31;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1071,114,0
chrXIII	801182	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=13.99;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1082,114,0
chrXIII	801226	.	G	A	740	SnpCluster	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;QD=8.51;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:87:773,87,0
chrXIII	801227	.	A	G	723	SnpCluster	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=34.86;MQ0=0;QD=8.31;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:87:756,87,0
chrXIII	801232	.	T	C	726	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.06;MQ0=0;MQRankSum=-1.351;QD=7.98;ReadPosRankSum=1.694;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:87:759,87,0
chrXIII	801254	.	C	T	814	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.48;MQ0=0;QD=8.95;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:87:847,87,0
chrXIII	801280	.	A	G	664	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=0.953;QD=8.30;ReadPosRankSum=1.689;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:78:697,78,0
chrXIII	801282	.	A	C	653	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=8.16;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:75:686,75,0
chrXIII	801283	.	T	A	666	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;MQRankSum=0.110;QD=8.22;ReadPosRankSum=1.688;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:75:699,75,0
chrXIII	801536	.	G	A	3048	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.02;FS=0.000;HaplotypeScore=10.5311;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=25.40;SB=-1.457e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3081,324,0
chrXIII	801732	.	G	A	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.818;QD=24.53;ReadPosRankSum=0.674;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1799,189,0
chrXIII	801754	.	G	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.37;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1503,159,0
chrXIII	801760	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=17.60;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1441,156,0
chrXIII	801808	.	G	A	1280	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=17.07;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1313,138,0
chrXIII	801823	.	C	A	1394	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.22;MQ0=0;QD=17.00;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1427,153,0
chrXIII	801852	.	C	T	2000	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.61;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2033,222,0
chrXIII	801876	.	C	T	2015	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=19.75;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2048,222,0
chrXIII	801921	.	C	T	2193	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.84;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2226,234,0
chrXIII	801957	.	C	T	1784	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=24.11;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1817,189,0
chrXIII	802065	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.74;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1307,141,0
chrXIII	802071	.	G	A	1349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-1.732;QD=19.00;ReadPosRankSum=-0.628;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1382,131,0
chrXIII	802119	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=18.40;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1505,159,0
chrXIII	802161	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=20.42;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1544,162,0
chrXIII	802176	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.02;FS=3.912;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=-1.570;QD=17.72;ReadPosRankSum=1.624;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1185,129,0
chrXIII	802188	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=18.85;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1277,141,0
chrXIII	802329	.	A	C	1923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-1.085;QD=20.90;ReadPosRankSum=1.656;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:1,90:92:99:1956,219,0
chrXIII	802356	.	C	T	2305	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.38;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2338,249,0
chrXIII	802432	.	A	G	1826	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=24.03;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1859,204,0
chrXIII	802461	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=23.58;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1424,156,0
chrXIII	802519	.	A	G	952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=-0.425;QD=17.31;ReadPosRankSum=1.667;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,52:55:99:985,111,0
chrXIII	802543	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=6.911;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=-0.759;QD=19.93;ReadPosRankSum=2.364;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1169,126,0
chrXIII	802566	.	C	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=22.76;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1194,126,0
chrXIII	802644	.	A	G	1611	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.65;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1644,183,0
chrXIII	802701	.	T	A	2421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=114;Dels=0.00;FS=4.135;HaplotypeScore=7.5099;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=0.213;QD=21.24;ReadPosRankSum=1.702;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2454,264,0
chrXIII	802825	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=18.73;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1138,120,0
chrXIII	802829	.	T	C	980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=61;Dels=0.00;FS=9.119;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=-0.131;QD=16.07;ReadPosRankSum=3.307;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:4,57:61:99:1013,114,0
chrXIII	802854	.	T	C	738	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=-0.928;QD=13.18;ReadPosRankSum=1.670;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:84:771,84,0
chrXIII	802876	.	G	T	688	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=13.23;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:78:721,78,0
chrXIII	802880	.	C	T	722	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=13.13;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:81:755,81,0
chrXIII	802912	.	A	G	890	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=12.54;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:923,102,0
chrXIII	802921	.	G	A	966	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=13.23;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:999,108,0
chrXIII	802960	.	T	C	1570	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.15;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1603,180,0
chrXIII	802989	.	T	C	1591	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=17.88;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1624,183,0
chrXIII	803013	.	G	A	1653	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=16.53;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1686,186,0
chrXIII	803021	.	C	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=17.26;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1880,195,0
chrXIII	803086	.	T	C	2662	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.64;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,127:129:99:2695,285,0
chrXIII	803149	.	T	C	1958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=3.047;HaplotypeScore=5.2543;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=-0.833;QD=19.20;ReadPosRankSum=2.305;SB=-1.264e+03	GT:AD:DP:GQ:PL	1/1:2,100:102:99:1991,219,0
chrXIII	803154	.	T	C	1747	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2878;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=18.99;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1780,198,0
chrXIII	803211	.	T	C	1682	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.33;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1715,189,0
chrXIII	803536	.	T	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.98;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1396,153,0
chrXIII	803680	.	G	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.13;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1543,168,0
chrXIII	803820	.	C	T	2017	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.92;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2050,216,0
chrXIII	803905	.	C	T	2367	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.4090;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.21;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2400,252,0
chrXIII	804103	.	T	C	1969	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.37;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2002,219,0
chrXIII	804379	.	C	G	1237	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=18.46;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1270,141,0
chrXIII	804397	.	C	A	1200	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=17.91;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1233,135,0
chrXIII	804400	.	G	A	1196	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=16.85;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1229,132,0
chrXIII	804770	.	C	T	1817	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.54;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1850,201,0
chrXIII	804774	.	A	T	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;DP=90;Dels=0.00;FS=11.795;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=49.59;MQ0=0;MQRankSum=-0.787;QD=19.18;ReadPosRankSum=2.855;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:3,87:90:99:1759,183,0
chrXIII	804798	.	G	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=18.62;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1970,204,0
chrXIII	804802	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=16.94;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1880,198,0
chrXIII	804869	.	C	T	2308	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.63;MQ0=0;QD=18.17;SB=-1.419e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2341,258,0
chrXIII	804888	.	T	A	2171	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=17.51;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2204,234,0
chrXIII	804916	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=3.048;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=46.17;MQ0=0;MQRankSum=-0.226;QD=14.30;ReadPosRankSum=1.702;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:1677,183,0
chrXIII	804970	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;QD=13.67;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1291,135,0
chrXIII	804991	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.59;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1423,147,0
chrXIII	805204	.	T	C	2609	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=42.49;MQ0=0;QD=21.56;SB=-1.506e+03	GT:AD:DP:GQ:PL	1/1:0,119:121:99:2642,285,0
chrXIII	805213	.	G	A	2685	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=101.6244;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=21.14;SB=-1.512e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2718,291,0
chrXIII	805270	.	C	A	2790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.163;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=13.3421;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=0.491;QD=20.22;ReadPosRankSum=1.706;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,135:138:99:2823,303,0
chrXIII	805321	.	C	T	2604	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=21.88;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2637,276,0
chrXIII	805324	.	A	G	2567	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=20.54;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2600,288,0
chrXIII	805368	.	C	T	2059	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=21.23;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2092,219,0
chrXIII	805419	.	A	G	1866	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=20.73;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1899,213,0
chrXIII	805436	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.71;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1708,183,0
chrXIII	805455	.	A	G	2005	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=20.67;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2038,228,0
chrXIII	805482	.	G	A	1991	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.33;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2024,222,0
chrXIII	805521	.	C	T	2513	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.8100;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.66;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2546,276,0
chrXIII	805587	.	C	T	2977	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.01;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=25.23;SB=-1.606e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3010,315,0
chrXIII	805689	.	C	A	2300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=106;Dels=0.00;FS=3.777;HaplotypeScore=9.8755;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;MQRankSum=0.742;QD=21.70;ReadPosRankSum=-0.445;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2333,249,0
chrXIII	805724	.	C	T	2410	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3496;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=22.52;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2443,261,0
chrXIII	805954	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.30;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1906,213,0
chrXIII	806068	.	G	T	1746	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.04;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1779,183,0
chrXIII	806118	.	A	G	1585	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=17.81;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1618,180,0
chrXIII	806533	.	A	T	995	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=17.46;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1028,114,0
chrXIII	807432	.	T	C	939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=3.933;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;MQRankSum=0.405;QD=19.98;ReadPosRankSum=1.659;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:972,108,0
chrXIII	807457	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.72;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1237,132,0
chrXIII	807522	.	C	T	2368	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.53;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2401,252,0
chrXIII	807742	.	A	G	797	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=16.27;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:830,90,0
chrXIII	807743	.	T	G	806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;MQRankSum=-1.663;QD=16.12;ReadPosRankSum=1.594;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:90:839,90,0
chrXIII	807915	.	C	G	2112	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.23;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2145,237,0
chrXIII	807924	.	C	G	2147	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.36;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2180,237,0
chrXIII	807956	.	G	A	1966	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.69;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1999,219,0
chrXIII	808003	.	T	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.93;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1776,192,0
chrXIII	808186	.	C	A	1673	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.2644;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=21.73;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1706,180,0
chrXIII	808362	.	G	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=21.95;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1701,177,0
chrXIII	808388	.	A	C	2018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.434;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;MQRankSum=-1.208;QD=23.47;ReadPosRankSum=1.692;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2051,222,0
chrXIII	808442	.	A	G	2084	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.814;DP=93;Dels=0.00;FS=6.166;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;MQRankSum=-0.857;QD=22.41;ReadPosRankSum=2.902;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:3,89:93:99:2117,231,0
chrXIII	808544	.	A	G	74.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;DP=23;Dels=0.00;FS=8.113;HaplotypeScore=10.8629;MLEAC=1;MLEAF=0.500;MQ=29.24;MQ0=0;MQRankSum=1.610;QD=3.22;ReadPosRankSum=-2.098;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:14,7:23:99:104,0,127
chrXIII	808548	.	A	T	33.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=23.6374;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=1.660;QD=1.22;ReadPosRankSum=-2.426;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:23,4:27:63:63,0,266
chrXIII	808554	.	A	T	51.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;DP=26;Dels=0.00;FS=6.628;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=27.35;MQ0=1;MQRankSum=0.708;QD=1.96;ReadPosRankSum=-0.335;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:20,6:26:81:81,0,261
chrXIII	808556	.	A	G	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;DP=27;Dels=0.00;FS=6.990;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.84;MQ0=2;MQRankSum=0.034;QD=1.44;ReadPosRankSum=-0.034;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:22,5:27:69:69,0,376
chrXIII	808828	.	G	T	36.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.94;MQ0=11;MQRankSum=-0.573;QD=1.80;ReadPosRankSum=1.203;SB=-6.487e-03	GT:AD:DP:GQ:PL	0/1:13,7:20:53:66,0,53
chrXIII	808863	.	T	C	70.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=23.59;MQ0=5;MQRankSum=-1.650;QD=2.92;ReadPosRankSum=2.950;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:8,16:24:83:100,0,83
chrXIII	808909	.	A	C	47.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.324;DP=33;Dels=0.00;FS=74.973;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.89;MQ0=1;MQRankSum=0.247;QD=1.45;ReadPosRankSum=4.767;SB=0.214	GT:AD:DP:GQ:PL	1/1:19,14:33:9:80,9,0
chrXIII	808917	.	T	A	46.06	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;DP=35;Dels=0.00;FS=65.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=27.10;MQ0=0;MQRankSum=0.152;QD=1.32;ReadPosRankSum=-4.192;SB=-6.059e-02	GT:AD:DP:GQ:PL	0/1:21,14:35:16:76,0,16
chrXIII	808919	.	A	T	40.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;DP=37;Dels=0.00;FS=56.189;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=27.72;MQ0=0;MQRankSum=-1.206;QD=1.08;ReadPosRankSum=-4.181;SB=-6.606e-03	GT:AD:DP:GQ:PL	0/1:23,14:37:44:70,0,44
chrXIII	808933	.	G	A	165.06	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.09;MQ0=0;QD=4.59;SB=-3.421e+02	GT:AD:DP:GQ:PL	1/1:0,34:36:21:198,21,0
chrXIII	808942	.	G	A	377	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=8.20;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:45:410,45,0
chrXIII	809106	.	G	A	2555	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=22.41;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2588,285,0
chrXIII	809151	.	T	C	2541	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=24.20;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2574,285,0
chrXIII	809198	.	A	G	1334	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=18.53;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1367,147,0
chrXIII	809204	.	C	T	1258	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=19.66;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1291,138,0
chrXIII	809255	.	G	A	336	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.58;MQ0=0;QD=10.50;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:42:369,42,0
chrXIII	809257	.	C	T	353	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.70;MQ0=0;QD=12.17;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:45:386,45,0
chrXIII	809261	.	C	T	319	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=9.97;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:42:352,42,0
chrXIII	809264	.	A	G	359	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;MQRankSum=-0.325;QD=11.22;ReadPosRankSum=1.516;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:45:392,45,0
chrXIII	809275	.	G	A	517	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;QD=15.21;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:63:550,63,0
chrXIII	809325	.	T	C	698	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=18.86;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:731,81,0
chrXIII	809473	.	C	T	2442	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.23;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2475,255,0
chrXIII	810229	.	G	A	983	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.48;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1016,105,0
chrXIII	810963	.	C	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=18.29;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1405,153,0
chrXIII	811133	.	A	G	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=1.110;QD=22.40;ReadPosRankSum=1.643;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1780,198,0
chrXIII	811161	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.35;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1498,159,0
chrXIII	811672	.	G	T	44.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;DP=34;Dels=0.00;FS=1.508;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=49.64;MQ0=0;MQRankSum=-1.939;QD=1.29;ReadPosRankSum=-2.096;SB=-9.701e+01	GT:AD:DP:GQ:PL	0/1:23,11:34:74:74,0,267
chrXIII	811673	.	C	T	34.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.213;DP=34;Dels=0.00;FS=1.508;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=49.64;MQ0=0;MQRankSum=-2.723;QD=1.00;ReadPosRankSum=-2.252;SB=-8.701e+01	GT:AD:DP:GQ:PL	0/1:23,10:34:64:64,0,285
chrXIII	811741	.	G	A	693	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;QD=14.74;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:75:726,75,0
chrXIII	811754	.	G	C	703	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=10.98;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:81:736,81,0
chrXIII	811756	.	A	G	682	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=10.49;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:78:715,78,0
chrXIII	811802	.	T	C	932	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;MQRankSum=0.017;QD=12.43;ReadPosRankSum=2.283;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:965,102,0
chrXIII	812178	.	C	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.38;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1312,138,0
chrXIII	815529	.	T	C	985	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.15;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1018,111,0
chrXIII	817301	.	C	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.55;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1679,177,0
chrXIII	819018	.	C	T	1636	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.37;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1669,177,0
chrXIII	819141	.	A	C	751	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.95;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:87:784,87,0
chrXIII	819652	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1553,174,0
chrXIII	819989	.	C	T	2331	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.1602;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.00;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2364,249,0
chrXIII	820241	.	C	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.87;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1598,171,0
chrXIII	821488	.	G	T	1378	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.36;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1411,159,0
chrXIII	822465	.	G	T	1430	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.34;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1463,150,0
chrXIII	822819	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.6440;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.98;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1159,126,0
chrXIII	823029	.	A	G	1118	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.466;QD=21.50;ReadPosRankSum=1.666;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1151,126,0
chrXIII	824598	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.908;DP=77;Dels=0.00;FS=2.579;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.453;QD=20.49;ReadPosRankSum=2.908;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:3,73:77:99:1611,174,0
chrXIII	824795	.	C	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.37;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1350,153,0
chrXIII	824813	.	A	G	795	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.56;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:828,93,0
chrXIII	824825	.	C	T	527	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=13.87;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:60:560,60,0
chrXIII	825605	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.865;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.681;QD=21.11;ReadPosRankSum=1.609;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1215,138,0
chrXIII	826533	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=3.287;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.492;QD=21.31;ReadPosRankSum=1.604;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1759,195,0
chrXIII	826657	.	C	A	3011	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=12.3539;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.52;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3044,324,0
chrXIII	826818	.	T	G	1103	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.35;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1136,126,0
chrXIII	827201	.	G	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.34;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1387,147,0
chrXIII	827669	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.2516;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.73;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1493,156,0
chrXIII	828055	.	T	C	2277	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.02;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2310,252,0
chrXIII	830235	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=54;Dels=0.00;FS=3.274;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.374;QD=22.13;ReadPosRankSum=1.597;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,51:54:99:1228,135,0
chrXIII	830265	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=23.32;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1269,138,0
chrXIII	830275	.	C	A	1198	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=22.19;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1231,129,0
chrXIII	830562	.	C	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=21.23;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1328,141,0
chrXIII	830586	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.60;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1207,126,0
chrXIII	830589	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=20.39;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1195,126,0
chrXIII	830715	.	C	T	2189	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9647;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.08;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2222,246,0
chrXIII	831156	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.9528;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.31;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1455,156,0
chrXIII	831366	.	C	A	2319	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.82;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2352,255,0
chrXIII	831576	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.38;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1215,129,0
chrXIII	831687	.	G	A	2336	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.25;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2369,249,0
chrXIII	831723	.	T	C	2050	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.58;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2083,225,0
chrXIII	831921	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.33;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1708,186,0
chrXIII	831989	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=3.163;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=1.135;QD=21.89;ReadPosRankSum=1.613;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1937,213,0
chrXIII	832077	.	A	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.64;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1560,165,0
chrXIII	832299	.	G	A	2080	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.5529;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=22.61;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2113,225,0
chrXIII	832337	.	A	G	2176	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=23.40;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2209,237,0
chrXIII	832356	.	T	A	1867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=6.620;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.074;QD=22.49;ReadPosRankSum=2.361;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1900,198,0
chrXIII	832485	.	T	C	2120	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.37;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2153,231,0
chrXIII	832782	.	A	G	2431	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=0.662;QD=19.45;ReadPosRankSum=1.704;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:1,122:125:99:2464,276,0
chrXIII	832917	.	T	A	1695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.9275;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.607;QD=22.01;ReadPosRankSum=1.687;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1728,183,0
chrXIII	833149	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.71;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1708,192,0
chrXIII	833279	.	A	T	2783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.927;DP=129;Dels=0.01;FS=2.050;HaplotypeScore=8.9974;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.550;QD=21.57;ReadPosRankSum=2.136;SB=-1.524e+03	GT:AD:DP:GQ:PL	1/1:4,124:128:99:2816,285,0
chrXIII	833534	.	C	T	4586.01	PASS	AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=11.4096;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=25.76;SB=-1.864e+03	GT:AD:DP:GQ:PL	1/1:0,177:178:99:4586,481,0
chrXIII	833648	.	G	A	3133	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=23.92;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3166,336,0
chrXIII	833673	.	T	A	2697	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.47;SB=-1.290e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2730,291,0
chrXIII	833889	.	C	T	2337	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.44;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2370,258,0
chrXIII	833905	.	C	T	2222	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5731;MLEAC=2;MLEAF=1.00;MQ=55.25;MQ0=0;QD=20.39;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2255,240,0
chrXIII	834040	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.49;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1570,171,0
chrXIII	834111	.	G	A	2377	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.01;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2410,252,0
chrXIII	834662	.	C	T	1528	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=22.81;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1561,162,0
chrXIII	835125	.	T	G	1874	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;MQRankSum=1.249;QD=21.79;ReadPosRankSum=1.611;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1907,207,0
chrXIII	835147	.	A	T	1963	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.06;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1996,210,0
chrXIII	835289	.	G	A	2732	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.96;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2765,303,0
chrXIII	835312	.	T	C	2415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=0.567;QD=21.00;ReadPosRankSum=1.701;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:1,109:115:99:2448,270,0
chrXIII	835425	.	A	T	1676	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.69;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1709,186,0
chrXIII	835545	.	C	T	2340	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=11.5950;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.71;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:0,110:113:99:2373,258,0
chrXIII	835676	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.7362;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=17.14;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1284,135,0
chrXIII	835854	.	G	A	2368	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.45;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2401,255,0
chrXIII	836466	.	G	A	2037	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.25;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:2070,216,0
chrXIII	836660	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.18;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1452,162,0
chrXIII	837116	.	A	G	2048	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.76;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2081,234,0
chrXIII	837145	.	C	T	2217	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.62;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2250,234,0
chrXIII	837515	.	A	G	2301	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.92;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2334,255,0
chrXIII	837772	.	C	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=88.7625;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=18.97;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2006,216,0
chrXIII	837788	.	T	C	2176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;MQRankSum=0.016;QD=19.96;ReadPosRankSum=1.669;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2209,243,0
chrXIII	837798	.	T	G	2066	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;QD=19.13;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2099,231,0
chrXIII	837875	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.88;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2120,234,0
chrXIII	837908	.	A	G	2096	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.55;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2129,231,0
chrXIII	837971	.	C	T	1841	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=21.66;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1874,195,0
chrXIII	838117	.	G	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=18.49;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1993,219,0
chrXIII	838133	.	G	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=21.19;SB=-1.319e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2067,219,0
chrXIII	838192	.	C	G	1785	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.52;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1818,195,0
chrXIII	838248	.	C	A	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=97;Dels=0.00;FS=3.912;HaplotypeScore=9.0361;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.505;QD=19.21;ReadPosRankSum=-0.866;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1896,201,0
chrXIII	838336	.	G	C	2003	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.26;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2036,225,0
chrXIII	838867	.	T	C	1717	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.73;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1750,189,0
chrXIII	839875	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.07;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1806,186,0
chrXIII	839912	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.801;QD=22.16;ReadPosRankSum=1.681;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1540,171,0
chrXIII	841443	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.95;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1549,174,0
chrXIII	841486	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=18.51;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1791,198,0
chrXIII	841599	.	A	G	1705	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0450;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.30;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1738,189,0
chrXIII	841704	.	C	T	2387	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2420,255,0
chrXIII	841893	.	A	G	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=89;Dels=0.00;FS=11.142;HaplotypeScore=7.5068;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.184;QD=20.58;ReadPosRankSum=2.368;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:3,85:89:99:1865,201,0
chrXIII	842091	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.306;QD=20.67;ReadPosRankSum=1.651;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1811,201,0
chrXIII	842364	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.83;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1553,168,0
chrXIII	843360	.	G	A	1108	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.16;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1141,126,0
chrXIII	844197	.	A	G	2068	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0897;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2101,231,0
chrXIII	844681	.	T	C	1577	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.60;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1610,180,0
chrXIII	846009	.	G	A	2290	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.4313;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=22.90;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2323,243,0
chrXIII	846119	.	T	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.22;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1226,135,0
chrXIII	846242	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=22.95;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1548,168,0
chrXIII	846261	.	C	A	1492	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.94;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1525,159,0
chrXIII	846356	.	C	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.94;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1750,180,0
chrXIII	846359	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.66;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1665,177,0
chrXIII	846548	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.90;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1454,159,0
chrXIII	846600	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.10;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1299,144,0
chrXIII	846746	.	T	C	1575	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.28;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1608,177,0
chrXIII	847205	.	A	G	2286	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2319,258,0
chrXIII	848515	.	A	C	3133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=11.7632;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.211;QD=20.48;ReadPosRankSum=0.894;SB=-1.551e+03	GT:AD:DP:GQ:PL	1/1:1,152:153:99:3166,329,0
chrXIII	850030	.	G	T	1835	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.47;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1868,195,0
chrXIII	850884	.	C	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.76;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1080,114,0
chrXIII	851620	.	T	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.72;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1923,204,0
chrXIII	851822	.	T	C	898	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.63;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:931,102,0
chrXIII	851845	.	G	A	776	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=24.25;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:84:809,84,0
chrXIII	851869	.	C	T	968	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=22.00;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1001,108,0
chrXIII	851894	.	A	G	1012	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.46;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1045,114,0
chrXIII	851914	.	A	G	1146	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.11;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1179,129,0
chrXIII	853001	.	G	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.54;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1498,159,0
chrXIII	853271	.	C	T	1266	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.42;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1299,138,0
chrXIII	853565	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0894;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.00;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1353,144,0
chrXIII	853595	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=20.42;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1197,132,0
chrXIII	853802	.	C	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.62;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1438,156,0
chrXIII	853913	.	A	T	1096	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.57;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1129,126,0
chrXIII	853954	.	A	G	1853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=82;Dels=0.00;FS=8.828;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.105;QD=22.60;ReadPosRankSum=2.390;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1886,207,0
chrXIII	854292	.	T	A	943	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:976,111,0
chrXIII	855008	.	A	G	1914	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.52;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1947,207,0
chrXIII	855635	.	G	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.1108;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.25;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1219,135,0
chrXIII	855808	.	G	C	2480	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.96;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2513,270,0
chrXIII	855825	.	A	G	2412	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.0037;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=23.88;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2445,267,0
chrXIII	855975	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.00;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1199,132,0
chrXIII	856026	.	A	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.80;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1279,141,0
chrXIII	856038	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=17.00;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1155,120,0
chrXIII	856042	.	C	T	1180	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=16.62;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1213,129,0
chrXIII	856275	.	C	T	1385	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.70;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1418,153,0
chrXIII	856401	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.95;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1657,177,0
chrXIII	856554	.	T	A	1733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.168;QD=20.15;ReadPosRankSum=1.652;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1766,192,0
chrXIII	856673	.	T	C	2074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=106;Dels=0.00;FS=4.455;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.261;QD=19.57;ReadPosRankSum=1.699;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2107,225,0
chrXIII	856807	.	A	G	1891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.823;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.563;QD=22.78;ReadPosRankSum=1.690;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1924,210,0
chrXIII	857214	.	C	T	1839	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.43;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1872,195,0
chrXIII	857240	.	A	G	1732	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.330;QD=20.62;ReadPosRankSum=1.691;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1765,195,0
chrXIII	857306	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.22;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1167,129,0
chrXIII	857371	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.03;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1251,138,0
chrXIII	857379	.	G	A	1171	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=17.22;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1204,129,0
chrXIII	857448	.	C	G	1266	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=16.44;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1299,147,0
chrXIII	857520	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=79;Dels=0.00;FS=7.286;HaplotypeScore=11.5469;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.269;QD=21.62;ReadPosRankSum=2.355;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:2,76:79:99:1741,192,0
chrXIII	857568	.	T	A	1560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.501;DP=71;Dels=0.00;FS=6.079;HaplotypeScore=5.8333;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=0.786;QD=21.97;ReadPosRankSum=1.929;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:3,68:71:99:1593,148,0
chrXIII	857676	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.76;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1046,117,0
chrXIII	857756	.	G	A	1852	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=25.03;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1885,198,0
chrXIII	857787	.	G	A	1976	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.2027;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.98;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2009,210,0
chrXIII	857842	.	T	C	1864	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.19;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1897,210,0
chrXIII	860181	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.50;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1515,162,0
chrXIII	860703	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.41;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1182,132,0
chrXIII	862977	.	T	C	989	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.66;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1022,114,0
chrXIII	863208	.	C	T	2356	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.14;SB=-1.519e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2389,252,0
chrXIII	863229	.	T	C	2628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=130;Dels=0.00;FS=2.882;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;MQRankSum=-1.077;QD=20.22;ReadPosRankSum=2.354;SB=-1.458e+03	GT:AD:DP:GQ:PL	1/1:2,127:130:99:2661,291,0
chrXIII	863507	.	G	A	1770	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=17.88;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1803,189,0
chrXIII	863526	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.48;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:1945,207,0
chrXIII	863539	.	T	C	1997	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9687;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=17.07;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2030,225,0
chrXIII	863763	.	G	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=21.57;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1349,147,0
chrXIII	863801	.	A	G	978	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=1.116;QD=21.73;ReadPosRankSum=1.655;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1011,111,0
chrXIII	864272	.	A	G	1907	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9939;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.43;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1940,213,0
chrXIII	864888	.	G	T	2300	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.70;SB=-1.324e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2333,246,0
chrXIII	865402	.	A	G	1808	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.31;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1841,204,0
chrXIII	868383	.	A	G	907	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.30;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:940,105,0
chrXIII	868389	.	T	C	772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=3.575;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=0.549;QD=18.83;ReadPosRankSum=1.648;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:87:805,87,0
chrXIII	868542	.	G	A	687	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.36;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:78:720,78,0
chrXIII	868833	.	T	C	1210	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=3.002;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-1.768;QD=20.51;ReadPosRankSum=2.365;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:2,56:59:99:1243,138,0
chrXIII	869058	.	C	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.46;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1142,126,0
chrXIII	869428	.	A	G	956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=3.245;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;MQRankSum=-0.213;QD=16.48;ReadPosRankSum=1.550;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:989,108,0
chrXIII	869439	.	G	A	806	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=17.15;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:839,90,0
chrXIII	869963	.	G	T	2377	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.61;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2410,255,0
chrXIII	870074	.	C	T	2793	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.2182;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.54;SB=-1.549e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2826,309,0
chrXIII	870328	.	C	T	1849	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.01;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1882,201,0
chrXIII	870588	.	C	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.50;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1161,123,0
chrXIII	870784	.	A	T	1756	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.66;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1789,192,0
chrXIII	870868	.	C	T	1569	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=21.20;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1602,168,0
chrXIII	870888	.	G	A	1243	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=20.05;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1276,138,0
chrXIII	870889	.	G	A	1217	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.82;MQ0=0;QD=19.63;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1250,135,0
chrXIII	870894	.	G	A	1200	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=17.14;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1233,132,0
chrXIII	870922	.	T	C	701	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8923;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=14.60;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:81:734,81,0
chrXIII	871099	.	T	C	1496	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.00;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1529,168,0
chrXIII	871217	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=23.30;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1757,186,0
chrXIII	871240	.	C	T	1551	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=22.81;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1584,168,0
chrXIII	871306	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.38;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1102,120,0
chrXIII	871355	.	A	T	1181	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.36;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1214,129,0
chrXIII	871808	.	C	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.8429;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.54;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1186,132,0
chrXIII	872287	.	C	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=19.98;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1072,111,0
chrXIII	872370	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.9774;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=18.62;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1653,180,0
chrXIII	872374	.	A	C	1474	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.8643;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.14;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1507,171,0
chrXIII	872669	.	T	G	1166	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.00;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1199,132,0
chrXIII	872702	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=3.347;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.491;QD=20.37;ReadPosRankSum=1.525;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1398,153,0
chrXIII	872820	.	C	A	2254	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.60;SB=-1.488e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2287,249,0
chrXIII	872821	.	A	G	2282	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.84;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2315,255,0
chrXIII	872837	.	T	C	2179	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=3.371;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.812;QD=19.28;ReadPosRankSum=1.701;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2212,243,0
chrXIII	872926	.	A	C	2495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=110;Dels=0.00;FS=5.790;HaplotypeScore=4.9555;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.693;QD=22.68;ReadPosRankSum=1.669;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2528,276,0
chrXIII	873141	.	C	T	1178	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9252;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=17.32;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1211,141,0
chrXIII	873246	.	A	G	3636.01	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=10.2577;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=22.17;SB=-2.114e+03	GT:AD:DP:GQ:PL	1/1:0,161:164:99:3636,402,0
chrXIII	873817	.	G	A	696	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=17.40;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:729,78,0
chrXIII	873861	.	T	G	757	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.54;MQ0=0;QD=18.92;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:790,93,0
chrXIII	873882	.	G	A	619	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=16.29;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:75:652,75,0
chrXIII	873884	.	T	C	652	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=17.62;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:685,81,0
chrXIII	873888	.	C	G	695	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=18.29;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:728,84,0
chrXIII	874014	.	G	T	1582	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=1;QD=21.38;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1615,171,0
chrXIII	874157	.	A	G	39.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=40;Dels=0.00;FS=3.979;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=18.09;MQ0=0;MQRankSum=-1.733;QD=1.00;ReadPosRankSum=1.646;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,39:40:9:72,9,0
chrXIII	874233	.	T	C	32.97	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.78;MQ0=0;QD=3.00;SB=-8.391e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:9:65,9,0
chrXIII	874247	.	G	C	107.13	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.52;MQ0=0;QD=5.36;SB=-1.851e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:18:140,18,0
chrXIII	874266	.	G	A	188.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.21;MQ0=0;QD=6.96;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:27:221,27,0
chrXIII	874272	.	C	T	225	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.81;MQ0=0;QD=6.25;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:30:258,30,0
chrXIII	874275	.	A	G	241	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=0;QD=6.51;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:33:274,33,0
chrXIII	874277	.	G	A	248	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.82;MQ0=0;QD=6.70;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:33:281,33,0
chrXIII	874278	.	C	T	268	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.35;MQ0=0;QD=7.05;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:36:301,36,0
chrXIII	874287	.	G	A	337	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;QD=5.71;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:42:370,42,0
chrXIII	874296	.	T	C	539	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;QD=8.17;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:66:572,66,0
chrXIII	874543	.	C	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=20.18;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1244,129,0
chrXIII	874942	.	T	A	2247	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.82;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2280,240,0
chrXIII	876530	.	G	A	1807	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5993;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.53;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1840,192,0
chrXIII	876747	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.19;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1549,168,0
chrXIII	876852	.	A	G	1287	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.81;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1320,144,0
chrXIII	877396	.	A	T	1691	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1724,183,0
chrXIII	877786	.	A	T	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.261;QD=19.86;ReadPosRankSum=2.381;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1463,153,0
chrXIII	878152	.	C	A	925	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.02;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:99:958,99,0
chrXIII	878178	.	A	G	962	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.37;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:995,108,0
chrXIII	878219	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.933;QD=22.19;ReadPosRankSum=1.666;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1187,129,0
chrXIII	878403	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.86;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1563,171,0
chrXIII	878722	.	T	A	739	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3617;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:81:772,81,0
chrXIII	878778	.	C	T	430	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=16.54;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:48:463,48,0
chrXIII	878823	.	A	C	110.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.016;DP=13;Dels=0.00;FS=32.345;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;MQRankSum=-3.016;QD=8.48;ReadPosRankSum=3.016;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:6,7:13:15:143,15,0
chrXIII	878825	.	A	T	111.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;DP=10;Dels=0.00;FS=20.792;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-2.166;QD=11.13;ReadPosRankSum=2.166;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:3,7:10:15:144,15,0
chrXIII	878834	.	A	G	130.13	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=16.27;SB=-1.076e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:18:163,18,0
chrXIII	879414	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.47;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1450,162,0
chrXIII	880104	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.16;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1784,189,0
chrXIII	880179	.	T	A	1761	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3620;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=19.79;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1794,189,0
chrXIII	880236	.	G	T	2132	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=19.21;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,109:111:99:2165,228,0
chrXIII	880244	.	G	A	2079	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.18;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2112,231,0
chrXIII	880373	.	C	T	2736	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.99;SB=-1.604e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2769,285,0
chrXIII	880430	.	C	T	1719	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1752,183,0
chrXIII	881617	.	T	C	1586	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.048;QD=22.03;ReadPosRankSum=1.684;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1619,174,0
chrXIII	881716	.	G	A	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4973;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.592;QD=19.90;ReadPosRankSum=1.592;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1585,177,0
chrXIII	882115	.	G	A	1821	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.21;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1854,195,0
chrXIII	882391	.	G	A	1033	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.12;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1066,111,0
chrXIII	882406	.	C	T	989	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=17.66;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1022,108,0
chrXIII	882454	.	G	C	1095	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=17.95;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1128,126,0
chrXIII	882943	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.310;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.617;QD=20.03;ReadPosRankSum=1.675;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1235,132,0
chrXIII	883123	.	A	G	1702	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.64;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1735,189,0
chrXIII	883144	.	T	C	1691	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.82;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1724,183,0
chrXIII	883606	.	T	C	1580	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.07;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1613,177,0
chrXIII	883726	.	C	T	1591	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.48;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1624,171,0
chrXIII	884877	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.4100;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.50;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1608,168,0
chrXIII	885057	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=21.27;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1437,150,0
chrXIII	885067	.	C	T	1141	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.83;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1174,126,0
chrXIII	885211	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.05;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1090,120,0
chrXIII	885661	.	C	T	1769	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.28;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1802,198,0
chrXIII	885848	.	G	A	1442	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.03;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1475,153,0
chrXIII	886989	.	G	T	2807	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.02;FS=0.000;HaplotypeScore=27.0117;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.79;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2840,297,0
chrXIII	887158	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.80;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1302,138,0
chrXIII	887633	.	A	G	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=71;Dels=0.00;FS=2.846;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.816;QD=19.31;ReadPosRankSum=2.309;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1404,153,0
chrXIII	888010	.	A	C	1371	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=20.77;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1404,153,0
chrXIII	888020	.	A	T	1186	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=4.840;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.732;QD=18.53;ReadPosRankSum=1.624;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1219,129,0
chrXIII	888021	.	G	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.30;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1186,129,0
chrXIII	888298	.	T	C	1693	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7857;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.28;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1726,192,0
chrXIII	888449	.	T	C	750	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.1436;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=12.93;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,53:58:87:783,87,0
chrXIII	888463	.	T	C	652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=3.819;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;MQRankSum=0.294;QD=12.30;ReadPosRankSum=1.667;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:75:685,75,0
chrXIII	888637	.	C	T	2336	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.3790;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.97;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2369,261,0
chrXIII	888860	.	A	C	4363.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=183;Dels=0.00;FS=4.326;HaplotypeScore=8.8462;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.433;QD=23.84;ReadPosRankSum=1.712;SB=-1.746e+03	GT:AD:DP:GQ:PL	1/1:1,175:183:99:4363,471,0
chrXIII	888990	.	C	T	2292	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.39;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2325,243,0
chrXIII	889053	.	C	T	1969	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.90;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2002,207,0
chrXIII	889102	.	C	T	2424	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.5222;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.87;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2457,270,0
chrXIII	889183	.	A	G	3270.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.887;DP=152;Dels=0.00;FS=2.584;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-2.087;QD=21.51;ReadPosRankSum=2.940;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:3,148:152:99:3270,357,0
chrXIII	889638	.	G	A	3361.01	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.50;SB=-1.747e+03	GT:AD:DP:GQ:PL	1/1:0,141:143:99:3361,348,0
chrXIII	890590	.	C	T	3990.01	PASS	AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=7.4875;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.45;SB=-2.180e+03	GT:AD:DP:GQ:PL	1/1:0,185:186:99:3990,421,0
chrXIII	890848	.	T	C	1485	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.29;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1518,165,0
chrXIII	890947	.	C	T	2174	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=13.3186;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.52;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2207,234,0
chrXIII	892255	.	T	C	1197	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.00;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1230,129,0
chrXIII	892535	.	T	C	1131	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=16.88;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1164,129,0
chrXIII	892536	.	G	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=16.79;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1158,126,0
chrXIII	892597	.	T	C	746	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=15.54;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:779,87,0
chrXIII	892643	.	T	C	1064	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.46;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1097,120,0
chrXIII	892700	.	A	C	1573	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.48;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1606,174,0
chrXIII	893651	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=21.44;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1598,174,0
chrXIII	893659	.	G	T	1375	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.18;MQ0=0;QD=19.64;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1408,153,0
chrXIII	893774	.	A	G	1299	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.085;QD=21.30;ReadPosRankSum=1.619;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1332,147,0
chrXIII	894039	.	A	T	2075	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.58;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2108,225,0
chrXIII	894275	.	C	T	2374	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.39;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2407,258,0
chrXIII	896227	.	A	G	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.184;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.231;QD=22.39;ReadPosRankSum=1.641;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1757,192,0
chrXIII	896918	.	G	T	2916	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0583;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.71;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2949,315,0
chrXIII	897093	.	G	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.4121;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.92;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1326,141,0
chrXIII	897391	.	G	A	1500	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.99;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1533,171,0
chrXIII	897430	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.41;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1596,171,0
chrXIII	897583	.	G	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=21.64;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1916,204,0
chrXIII	897605	.	A	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.45;MQ0=0;QD=20.46;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1854,204,0
chrXIII	897633	.	C	T	1388	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=18.26;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1421,153,0
chrXIII	897639	.	C	T	1313	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;QD=17.28;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1346,144,0
chrXIII	897645	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.01;MQ0=0;QD=16.74;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1205,132,0
chrXIII	897761	.	C	T	1307	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.51;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1340,141,0
chrXIII	897795	.	C	G	1401	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.68;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1434,156,0
chrXIII	897815	.	G	A	1848	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=20.76;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1881,204,0
chrXIII	897927	.	T	C	2089	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.10;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2122,234,0
chrXIII	897951	.	C	A	1967	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=18.38;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2000,219,0
chrXIII	897979	.	A	T	1748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=4.172;HaplotypeScore=2.6670;MLEAC=2;MLEAF=1.00;MQ=45.96;MQ0=0;MQRankSum=-0.256;QD=15.20;ReadPosRankSum=1.551;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:1781,192,0
chrXIII	897990	.	A	G	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=4.049;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;MQRankSum=-0.111;QD=14.32;ReadPosRankSum=1.695;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1379,153,0
chrXIII	898013	.	G	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.88;MQ0=0;QD=14.28;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1390,150,0
chrXIII	898041	.	G	A	1324	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=15.40;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1357,144,0
chrXIII	898088	.	C	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.51;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1226,129,0
chrXIII	898169	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.03;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1484,168,0
chrXIII	898408	.	G	A	1626	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.85;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1659,177,0
chrXIII	898425	.	A	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.90;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1413,156,0
chrXIII	898462	.	G	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.56;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1226,129,0
chrXIII	898537	.	A	C	1629	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.43;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1662,183,0
chrXIII	898606	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.56;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1308,141,0
chrXIII	898692	.	A	G	1874	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.52;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1907,207,0
chrXIII	898776	.	A	G	1704	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.53;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1737,189,0
chrXIII	899002	.	C	A	2943	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.12;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2976,324,0
chrXIII	899239	.	T	C	4207.01	PASS	AC=2;AF=1.00;AN=2;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=13.7784;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.36;SB=-2.063e+03	GT:AD:DP:GQ:PL	1/1:0,197:197:99:4207,456,0
chrXIII	899812	.	A	G	809	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:96:842,96,0
chrXIII	900141	.	A	G	1237	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.70;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1270,138,0
chrXIII	901050	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=20.24;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1490,162,0
chrXIII	901451	.	G	A	2081	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.56;MQ0=0;QD=22.14;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2114,228,0
chrXIII	901535	.	A	T	3786.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-1.708e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3786,394,0
chrXIII	901656	.	C	A	1427	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.95;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1460,156,0
chrXIII	902020	.	C	T	1116	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.58;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1149,123,0
chrXIII	902209	.	G	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.23;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1317,138,0
chrXIII	902587	.	C	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.23;MQ0=0;QD=24.02;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1162,126,0
chrXIII	902696	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.95;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,36:38:87:791,87,0
chrXIII	902762	.	T	G	1007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.575;QD=22.89;ReadPosRankSum=1.654;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1040,114,0
chrXIII	903126	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.610;HaplotypeScore=4.9735;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.279;QD=23.34;ReadPosRankSum=1.676;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1480,165,0
chrXIII	903204	.	T	C	1138	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=54;Dels=0.00;FS=3.854;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.713;QD=21.07;ReadPosRankSum=1.664;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,50:54:99:1171,129,0
chrXIII	903498	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.027;QD=21.63;ReadPosRankSum=1.677;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1396,153,0
chrXIII	903771	.	T	C	910	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.20;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:943,102,0
chrXIII	903804	.	A	G	879	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.53;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:912,102,0
chrXIII	903826	.	T	C	1004	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.59;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1037,117,0
chrXIII	903875	.	T	G	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=5.870;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.243;QD=20.36;ReadPosRankSum=1.691;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1764,192,0
chrXIII	904006	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=24.61;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1288,135,0
chrXIII	904067	.	G	C	867	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.85;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:900,102,0
chrXIII	904069	.	A	C	931	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.24;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:964,105,0
chrXIII	904131	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=48;Dels=0.00;FS=3.590;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=1.299;QD=17.77;ReadPosRankSum=1.227;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:96:886,96,0
chrXIII	904272	.	C	A	1641	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.6543;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=19.31;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1674,189,0
chrXIII	904456	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.7327;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.51;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1448,150,0
chrXIII	904676	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.95;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1185,126,0
chrXIII	904920	.	C	T	717	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:750,78,0
chrXIII	905025	.	T	C	719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.933;QD=18.44;ReadPosRankSum=1.644;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:84:752,84,0
chrXIII	905217	.	A	C	1281	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.87;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1314,144,0
chrXIII	905531	.	T	C	1537	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=24.40;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1570,171,0
chrXIII	905893	.	A	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.37;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1482,156,0
chrXIII	905943	.	A	G	980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.553;QD=20.85;ReadPosRankSum=1.585;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1013,114,0
chrXIII	906187	.	G	A	1491	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.00;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1524,156,0
chrXIII	906340	.	G	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9922;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=18.82;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1068,117,0
chrXIII	906407	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.6880;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=1.203;QD=20.19;ReadPosRankSum=-1.444;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1507,139,0
chrXIII	906589	.	A	G	2476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=110;Dels=0.00;FS=4.612;HaplotypeScore=8.1150;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.570;QD=22.51;ReadPosRankSum=1.667;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,106:110:99:2509,258,0
chrXIII	906678	.	C	T	2589	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.6538;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.71;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2622,276,0
chrXIII	906771	.	A	G	2072	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.81;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2105,231,0
chrXIII	906784	.	T	C	2115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.679;QD=20.74;ReadPosRankSum=1.698;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2148,234,0
chrXIII	907585	.	T	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.72;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1711,186,0
chrXIII	907700	.	T	C	1294	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.49;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1327,144,0
chrXIII	907728	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=15.68;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1052,114,0
chrXIII	907958	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=18.37;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1741,189,0
chrXIII	908014	.	G	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.64;MQ0=0;QD=18.71;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1324,138,0
chrXIII	908047	.	T	C	1316	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=19.94;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1349,147,0
chrXIII	908105	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=44.93;MQ0=0;QD=19.85;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1363,150,0
chrXIII	908138	.	C	T	966	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.6016;MLEAC=2;MLEAF=1.00;MQ=41.83;MQ0=0;QD=18.94;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:999,105,0
chrXIII	908174	.	G	T	167.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.275;DP=65;Dels=0.00;FS=20.567;HaplotypeScore=46.7843;MLEAC=1;MLEAF=0.500;MQ=34.41;MQ0=0;MQRankSum=-1.475;QD=2.57;ReadPosRankSum=1.900;SB=-3.501e+01	GT:AD:DP:GQ:PL	0/1:42,23:65:99:197,0,199
chrXIII	908175	.	T	C	159.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;DP=66;Dels=0.00;FS=29.264;HaplotypeScore=48.3617;MLEAC=1;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=-0.482;QD=2.41;ReadPosRankSum=2.492;SB=-3.007e+00	GT:AD:DP:GQ:PL	0/1:45,21:66:99:189,0,251
chrXIII	908177	.	A	G	233.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DP=65;Dels=0.00;FS=6.734;HaplotypeScore=87.8928;MLEAC=1;MLEAF=0.500;MQ=33.91;MQ0=0;MQRankSum=-1.339;QD=3.58;ReadPosRankSum=0.772;SB=-3.490e+02	GT:AD:DP:GQ:PL	0/1:29,36:65:99:263,0,191
chrXIII	908179	.	T	G	168.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;DP=67;Dels=0.00;FS=20.936;HaplotypeScore=70.2026;MLEAC=1;MLEAF=0.500;MQ=34.38;MQ0=0;MQRankSum=-2.250;QD=2.51;ReadPosRankSum=1.690;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,18:67:99:198,0,232
chrXIII	908185	.	A	G	188.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;DP=98;Dels=0.00;FS=39.213;HaplotypeScore=83.4068;MLEAC=1;MLEAF=0.500;MQ=34.85;MQ0=0;MQRankSum=0.274;QD=1.92;ReadPosRankSum=-1.003;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:70,27:98:99:218,0,386
chrXIII	908192	.	T	C	271.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.567;DP=115;Dels=0.00;FS=44.896;HaplotypeScore=61.8456;MLEAC=1;MLEAF=0.500;MQ=35.84;MQ0=0;MQRankSum=1.806;QD=2.36;ReadPosRankSum=-2.578;SB=-3.560e+02	GT:AD:DP:GQ:PL	0/1:60,55:115:99:301,0,452
chrXIII	908196	.	G	C	865.19	SnpCluster	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=52.0210;MLEAC=1;MLEAF=0.500;MQ=36.32;MQ0=0;QD=7.33;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,101:118:99:897,99,0
chrXIII	908198	.	G	T	85.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;DP=126;Dels=0.00;FS=36.284;HaplotypeScore=53.8013;MLEAC=1;MLEAF=0.500;MQ=36.45;MQ0=0;MQRankSum=-0.654;QD=0.67;ReadPosRankSum=-1.459;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:107,19:126:99:115,0,793
chrXIII	908203	.	G	A	53.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.534;DP=139;Dels=0.00;FS=54.392;HaplotypeScore=20.7108;MLEAC=1;MLEAF=0.500;MQ=36.63;MQ0=0;MQRankSum=-1.288;QD=0.38;ReadPosRankSum=-2.793;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:116,22:139:83:83,0,879
chrXIII	908218	.	C	T	640.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.389;DP=156;Dels=0.00;FS=14.514;HaplotypeScore=5.7279;MLEAC=1;MLEAF=0.500;MQ=38.03;MQ0=0;MQRankSum=0.474;QD=4.10;ReadPosRankSum=-0.206;SB=-8.010e+02	GT:AD:DP:GQ:PL	0/1:74,82:156:99:670,0,572
chrXIII	908246	.	G	T	201.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;DP=187;Dels=0.00;FS=6.972;HaplotypeScore=101.4162;MLEAC=1;MLEAF=0.500;MQ=37.72;MQ0=0;MQRankSum=-1.702;QD=1.07;ReadPosRankSum=-0.157;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:149,37:187:99:231,0,1330
chrXIII	908247	.	T	C	200.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;DP=186;Dels=0.00;FS=7.013;HaplotypeScore=131.3175;MLEAC=1;MLEAF=0.500;MQ=37.77;MQ0=0;MQRankSum=-2.020;QD=1.08;ReadPosRankSum=-0.455;SB=-8.201e+01	GT:AD:DP:GQ:PL	0/1:149,37:186:99:230,0,1410
chrXIII	908254	.	T	C	59.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.536;DP=182;Dels=0.00;FS=2.754;HaplotypeScore=133.5702;MLEAC=1;MLEAF=0.500;MQ=37.60;MQ0=0;MQRankSum=-0.750;QD=0.32;ReadPosRankSum=-0.204;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:155,26:182:89:89,0,1610
chrXIII	908257	.	A	G	314.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.161;DP=178;Dels=0.00;FS=78.112;HaplotypeScore=98.4610;MLEAC=1;MLEAF=0.500;MQ=37.78;MQ0=0;MQRankSum=-2.874;QD=1.76;ReadPosRankSum=1.137;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:119,59:178:99:344,0,1303
chrXIII	908270	.	T	G	87.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.746;DP=151;Dels=0.00;FS=52.789;HaplotypeScore=65.5610;MLEAC=1;MLEAF=0.500;MQ=38.51;MQ0=0;MQRankSum=-3.175;QD=0.58;ReadPosRankSum=-1.056;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:106,45:151:99:117,0,1320
chrXIII	908275	.	G	A	1265.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.443;DP=147;Dels=0.00;FS=50.091;HaplotypeScore=59.6642;MLEAC=1;MLEAF=0.500;MQ=38.54;MQ0=0;MQRankSum=4.304;QD=8.61;ReadPosRankSum=1.698;SB=-7.860e+02	GT:AD:DP:GQ:PL	0/1:44,103:147:29:1295,0,29
chrXIII	908287	.	G	A	705.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.143;DP=108;Dels=0.00;FS=34.721;HaplotypeScore=58.7778;MLEAC=1;MLEAF=0.500;MQ=37.60;MQ0=0;MQRankSum=3.609;QD=6.53;ReadPosRankSum=0.946;SB=-3.589e+02	GT:AD:DP:GQ:PL	0/1:22,67:108:82:735,0,82
chrXIII	908300	.	C	T	68.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.299;DP=83;Dels=0.00;FS=109.947;HaplotypeScore=15.8221;MLEAC=1;MLEAF=0.500;MQ=36.45;MQ0=0;MQRankSum=-1.417;QD=0.82;ReadPosRankSum=-0.754;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,30:83:98:98,0,621
chrXIII	908306	.	T	G	431.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.956;DP=70;Dels=0.00;FS=55.228;HaplotypeScore=12.9269;MLEAC=1;MLEAF=0.500;MQ=35.51;MQ0=0;MQRankSum=-0.202;QD=6.16;ReadPosRankSum=-1.341;SB=-3.800e+02	GT:AD:DP:GQ:PL	0/1:18,51:70:71:461,0,71
chrXIII	908311	.	A	G	389.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;DP=64;Dels=0.00;FS=55.807;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=33.59;MQ0=0;MQRankSum=0.290;QD=6.08;ReadPosRankSum=-1.322;SB=-2.200e+02	GT:AD:DP:GQ:PL	0/1:22,42:64:68:419,0,68
chrXIII	908329	.	C	G	110.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=5.7477;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.01;SB=-2.313e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:15:143,15,0
chrXIII	908333	.	A	G	53.97	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=7.4305;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.348;QD=4.91;ReadPosRankSum=1.393;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:1,9:11:9:86,9,0
chrXIII	908334	.	T	C	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=6.6418;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.044;QD=4.90;ReadPosRankSum=1.393;SB=3.15	GT:AD:DP:GQ:PL	1/1:1,9:10:9:81,9,0
chrXIII	908338	.	G	A	56.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.044;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.348;QD=5.70;ReadPosRankSum=1.393;SB=1.56	GT:AD:DP:GQ:PL	1/1:1,9:10:9:89,9,0
chrXIII	908341	.	A	G	48.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.044;QD=4.90;ReadPosRankSum=1.393;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:1,9:10:9:81,9,0
chrXIII	908342	.	A	T	54.97	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=1.044;QD=5.50;ReadPosRankSum=1.393;SB=-9.645e-01	GT:AD:DP:GQ:PL	1/1:1,9:10:9:87,9,0
chrXIII	908359	.	A	G	103.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=16;Dels=0.00;FS=8.751;HaplotypeScore=2.6825;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;MQRankSum=1.504;QD=6.45;ReadPosRankSum=1.042;SB=-2.327e+01	GT:AD:DP:GQ:PL	1/1:1,14:16:15:136,15,0
chrXIII	908365	.	A	G	187.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.214;DP=20;Dels=0.00;FS=8.239;HaplotypeScore=2.6825;MLEAC=2;MLEAF=1.00;MQ=33.11;MQ0=0;MQRankSum=1.561;QD=9.35;ReadPosRankSum=0.173;SB=-5.504e+01	GT:AD:DP:GQ:PL	1/1:1,19:20:24:220,24,0
chrXIII	908462	.	T	G	47.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;DP=29;Dels=0.00;FS=11.364;HaplotypeScore=4.1526;MLEAC=1;MLEAF=0.500;MQ=30.47;MQ0=2;MQRankSum=-0.091;QD=1.62;ReadPosRankSum=1.120;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,8:29:77:77,0,78
chrXIII	908463	.	C	T	48.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DP=28;Dels=0.00;FS=8.098;HaplotypeScore=3.3639;MLEAC=1;MLEAF=0.500;MQ=30.52;MQ0=2;MQRankSum=-0.033;QD=1.71;ReadPosRankSum=0.967;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,6:28:78:78,0,79
chrXIII	908465	.	G	A	47.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;DP=27;Dels=0.00;FS=8.098;HaplotypeScore=2.5752;MLEAC=1;MLEAF=0.500;MQ=30.57;MQ0=2;MQRankSum=-0.300;QD=1.74;ReadPosRankSum=-1.767;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,6:27:77:77,0,98
chrXIII	908467	.	A	G,T	145.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=30.57;MQ0=2;QD=5.37;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/2:0,21,6:27:79:205,94,79,111,0,99
chrXIII	908503	.	G	A	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;DP=49;Dels=0.00;FS=3.380;HaplotypeScore=6.6429;MLEAC=1;MLEAF=0.500;MQ=29.83;MQ0=4;MQRankSum=0.489;QD=0.63;ReadPosRankSum=-2.187;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:35,13:49:61:61,0,193
chrXIII	908522	.	T	G	69.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5720;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=3;MQRankSum=0.201;QD=1.08;ReadPosRankSum=4.256;SB=-5.101e+01	GT:AD:DP:GQ:PL	0/1:49,14:64:99:99,0,255
chrXIII	908527	.	A	G	38.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.821;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=15.8555;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=3;MQRankSum=0.660;QD=0.59;ReadPosRankSum=4.742;SB=-4.801e+01	GT:AD:DP:GQ:PL	0/1:50,14:64:68:68,0,358
chrXIII	908534	.	T	G	192.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.730;DP=56;Dels=0.00;FS=2.607;HaplotypeScore=14.4745;MLEAC=1;MLEAF=0.500;MQ=30.49;MQ0=0;MQRankSum=0.849;QD=3.43;ReadPosRankSum=-0.899;SB=-1.170e+02	GT:AD:DP:GQ:PL	0/1:23,33:56:99:222,0,165
chrXIII	908535	.	C	T	189.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;DP=56;Dels=0.00;FS=1.163;HaplotypeScore=17.4502;MLEAC=1;MLEAF=0.500;MQ=30.49;MQ0=0;MQRankSum=0.394;QD=3.38;ReadPosRankSum=-1.166;SB=-1.450e+02	GT:AD:DP:GQ:PL	0/1:22,34:56:99:219,0,143
chrXIII	908539	.	G	A	184.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=12.5081;MLEAC=1;MLEAF=0.500;MQ=30.44;MQ0=0;MQRankSum=0.146;QD=3.17;ReadPosRankSum=-1.294;SB=-2.150e+02	GT:AD:DP:GQ:PL	0/1:21,37:58:99:214,0,120
chrXIII	908545	.	A	G	51.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;DP=53;Dels=0.00;FS=1.340;HaplotypeScore=8.4765;MLEAC=1;MLEAF=0.500;MQ=30.67;MQ0=0;MQRankSum=1.264;QD=0.96;ReadPosRankSum=1.934;SB=-4.901e+01	GT:AD:DP:GQ:PL	0/1:36,14:53:81:81,0,252
chrXIII	908556	.	C	T	64.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.9061;MLEAC=1;MLEAF=0.500;MQ=29.03;MQ0=0;MQRankSum=1.000;QD=1.39;ReadPosRankSum=-3.049;SB=-4.601e+01	GT:AD:DP:GQ:PL	0/1:33,13:46:94:94,0,247
chrXIII	908558	.	T	G	399	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.350;DP=46;Dels=0.00;FS=3.392;HaplotypeScore=4.9061;MLEAC=2;MLEAF=1.00;MQ=29.03;MQ0=0;MQRankSum=-0.350;QD=8.67;ReadPosRankSum=1.858;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:48:432,48,0
chrXIII	908563	.	A	G	384	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.074;DP=45;Dels=0.00;FS=3.310;HaplotypeScore=6.9503;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;MQRankSum=-1.790;QD=8.53;ReadPosRankSum=1.184;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:48:417,48,0
chrXIII	908570	.	T	G	32.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9723;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=0;MQRankSum=1.723;QD=0.73;ReadPosRankSum=-3.396;SB=-5.001e+01	GT:AD:DP:GQ:PL	0/1:31,13:44:62:62,0,252
chrXIII	908571	.	C	T	38.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9723;MLEAC=1;MLEAF=0.500;MQ=29.31;MQ0=0;MQRankSum=1.852;QD=0.86;ReadPosRankSum=-3.318;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:31,13:44:68:68,0,247
chrXIII	908581	.	A	G	204.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DP=44;Dels=0.00;FS=1.413;HaplotypeScore=1.9874;MLEAC=1;MLEAF=0.500;MQ=28.62;MQ0=0;MQRankSum=0.520;QD=4.64;ReadPosRankSum=3.664;SB=-1.840e+02	GT:AD:DP:GQ:PL	0/1:15,29:44:65:234,0,65
chrXIII	908592	.	C	T	159.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.929;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=0;MQRankSum=-0.398;QD=5.89;ReadPosRankSum=0.027;SB=-1.097e+02	GT:AD:DP:GQ:PL	1/1:8,19:27:21:192,21,0
chrXIII	908594	.	T	G	153.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.000;DP=29;Dels=0.00;FS=1.973;HaplotypeScore=1.9841;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;MQRankSum=1.976;QD=5.28;ReadPosRankSum=1.244;SB=-1.511e+02	GT:AD:DP:GQ:PL	1/1:8,21:29:21:186,21,0
chrXIII	908606	.	T	G	36.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.9849;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=1.925;QD=1.57;ReadPosRankSum=-2.135;SB=-4.001e+01	GT:AD:DP:GQ:PL	0/1:17,6:23:34:66,0,34
chrXIII	908607	.	C	T	29.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.9743;MLEAC=1;MLEAF=0.500;MQ=28.70;MQ0=0;MQRankSum=1.855;QD=1.26;ReadPosRankSum=-2.345;SB=-3.201e+01	GT:AD:DP:GQ:PL	0/1:17,6:23:59:59,0,76
chrXIII	908617	.	G	C	63.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.004;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=0;MQRankSum=-0.274;QD=3.34;ReadPosRankSum=1.552;SB=-9.506e+01	GT:AD:DP:GQ:PL	1/1:1,18:19:12:96,12,0
chrXIII	908634	.	A	C	114.13	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.17;MQ0=0;QD=4.39;SB=-2.181e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:18:147,18,0
chrXIII	908647	.	G	T	336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.93;MQ0=0;MQRankSum=1.155;QD=8.00;ReadPosRankSum=-0.165;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:45:369,45,0
chrXIII	908659	.	T	C	422	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.59;MQ0=0;QD=8.27;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:51:455,51,0
chrXIII	908660	.	T	C	480	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.63;MQ0=0;QD=8.28;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:57:513,57,0
chrXIII	908770	.	T	G	1539	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=21.37;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1572,174,0
chrXIII	908906	.	A	T	1011	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=18.38;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1044,111,0
chrXIII	908913	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=18.56;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1128,120,0
chrXIII	909265	.	A	G	1370	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.75;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1403,156,0
chrXIII	909339	.	A	G	960	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.11;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:993,108,0
chrXIII	909413	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.33;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1270,138,0
chrXIII	909483	.	G	C	1361	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.64;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1394,153,0
chrXIII	909570	.	C	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.9017;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.06;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1297,144,0
chrXIII	909772	.	A	C	1298	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=17.31;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1331,147,0
chrXIII	909807	.	G	C	1352	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.27;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1385,153,0
chrXIII	909879	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.99;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1649,180,0
chrXIII	909953	.	C	G	1463	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=18.76;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1496,171,0
chrXIII	910304	.	C	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.52;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1137,120,0
chrXIII	910334	.	C	T	375.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.689;DP=204;Dels=0.00;FS=39.398;HaplotypeScore=51.1761;MLEAC=1;MLEAF=0.500;MQ=38.43;MQ0=0;MQRankSum=-1.181;QD=1.84;ReadPosRankSum=-1.124;SB=-4.960e+02	GT:AD:DP:GQ:PL	0/1:103,101:204:99:405,0,894
chrXIII	910346	.	A	G	568.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DP=241;Dels=0.00;FS=27.520;HaplotypeScore=46.3158;MLEAC=1;MLEAF=0.500;MQ=37.60;MQ0=0;MQRankSum=-2.385;QD=2.36;ReadPosRankSum=-0.415;SB=-2.950e+02	GT:AD:DP:GQ:PL	0/1:176,64:241:99:598,0,971
chrXIII	910352	.	G	A	525.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.766;DP=247;Dels=0.00;FS=28.408;HaplotypeScore=6.4398;MLEAC=1;MLEAF=0.500;MQ=37.26;MQ0=0;MQRankSum=-2.133;QD=2.13;ReadPosRankSum=-1.225;SB=-2.550e+02	GT:AD:DP:GQ:PL	0/1:185,60:247:99:555,0,1119
chrXIII	910375	.	G	A	290.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.944;DP=256;Dels=0.00;FS=25.594;HaplotypeScore=12.9275;MLEAC=1;MLEAF=0.500;MQ=38.99;MQ0=0;MQRankSum=-1.674;QD=1.13;ReadPosRankSum=-0.616;SB=-9.201e+01	GT:AD:DP:GQ:PL	0/1:208,47:256:99:320,0,1398
chrXIII	910380	.	C	T	173.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.432;DP=260;Dels=0.00;FS=21.592;HaplotypeScore=16.2342;MLEAC=1;MLEAF=0.500;MQ=39.80;MQ0=0;MQRankSum=-3.782;QD=0.67;ReadPosRankSum=-0.584;SB=-5.901e+01	GT:AD:DP:GQ:PL	0/1:215,45:260:99:203,0,1636
chrXIII	910397	.	C	T	317.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;DP=209;Dels=0.00;FS=6.805;HaplotypeScore=33.1884;MLEAC=1;MLEAF=0.500;MQ=42.79;MQ0=0;MQRankSum=-7.699;QD=1.52;ReadPosRankSum=0.047;SB=-9.110e+02	GT:AD:DP:GQ:PL	0/1:113,96:209:99:347,0,1747
chrXIII	910409	.	C	A	460.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;DP=167;Dels=0.00;FS=37.589;HaplotypeScore=31.7469;MLEAC=1;MLEAF=0.500;MQ=45.97;MQ0=0;MQRankSum=-9.617;QD=2.75;ReadPosRankSum=-4.358;SB=-7.060e+02	GT:AD:DP:GQ:PL	0/1:75,91:167:99:490,0,1430
chrXIII	910413	.	G	C	323.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;DP=143;Dels=0.00;FS=22.156;HaplotypeScore=9.9137;MLEAC=1;MLEAF=0.500;MQ=47.83;MQ0=0;MQRankSum=-9.472;QD=2.26;ReadPosRankSum=-3.085;SB=-6.440e+02	GT:AD:DP:GQ:PL	0/1:76,67:143:99:353,0,1471
chrXIII	910415	.	A	G	237.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;DP=142;Dels=0.00;FS=14.135;HaplotypeScore=9.9137;MLEAC=1;MLEAF=0.500;MQ=47.74;MQ0=0;MQRankSum=-9.508;QD=1.67;ReadPosRankSum=-3.259;SB=-5.510e+02	GT:AD:DP:GQ:PL	0/1:78,63:142:99:267,0,1458
chrXIII	910422	.	G	A	83.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.472;DP=112;Dels=0.00;FS=30.458;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=0;MQRankSum=-8.229;QD=0.74;ReadPosRankSum=-5.627;SB=-2.690e+02	GT:AD:DP:GQ:PL	0/1:68,43:112:99:113,0,1449
chrXIII	910423	.	C	T	55.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;DP=110;Dels=0.00;FS=28.213;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=50.21;MQ0=0;MQRankSum=-8.549;QD=0.50;ReadPosRankSum=-5.971;SB=-2.170e+02	GT:AD:DP:GQ:PL	0/1:68,42:110:85:85,0,1413
chrXIII	910733	.	C	T	1716	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=18.65;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1749,183,0
chrXIII	910955	.	A	T	3938.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=12.0080;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=25.74;SB=-1.841e+03	GT:AD:DP:GQ:PL	1/1:0,153:153:99:3938,426,0
chrXIII	911382	.	A	T	2146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=99;Dels=0.00;FS=3.240;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.196;QD=21.68;ReadPosRankSum=1.661;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2179,240,0
chrXIII	911502	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.054;QD=19.60;ReadPosRankSum=1.678;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1307,144,0
chrXIII	911910	.	C	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.53;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1330,144,0
chrXIII	912213	.	C	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=15.24;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1420,156,0
chrXIII	912216	.	T	G	1371	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=15.23;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1404,156,0
chrXIII	912463	.	C	G	1469	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.60;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1502,165,0
chrXIII	912879	.	G	A	1994	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.9226;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=25.24;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:2027,216,0
chrXIII	913429	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1033,114,0
chrXIII	913525	.	T	C	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.150;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.466;QD=20.08;ReadPosRankSum=1.626;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1338,147,0
chrXIII	913648	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.208;QD=22.52;ReadPosRankSum=1.663;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1159,126,0
chrXIII	914143	.	A	G	1333	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.830;DP=65;Dels=0.00;FS=10.318;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.047;QD=20.51;ReadPosRankSum=2.830;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:99:1366,150,0
chrXIII	914575	.	T	C	2231	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.66;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2264,249,0
chrXIII	914876	.	G	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.61;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1224,135,0
chrXIII	914895	.	A	T	1151	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=16.93;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1184,132,0
chrXIII	915129	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.305;DP=82;Dels=0.00;FS=19.511;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.098;QD=15.24;ReadPosRankSum=4.862;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:9,72:82:99:1283,147,0
chrXIII	915182	.	A	G	2714	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=24.67;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2747,291,0
chrXIII	915420	.	A	C	1503	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=22.10;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1536,168,0
chrXIII	915435	.	A	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=21.57;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1521,165,0
chrXIII	916916	.	C	T	1666	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=22.21;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1699,180,0
chrXIII	917195	.	G	C	2406	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.82;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2439,270,0
chrXIII	917275	.	G	A	1747	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=21.57;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1780,183,0
chrXIII	917437	.	C	T	2565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=138;Dels=0.00;FS=4.207;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=0.544;QD=18.59;ReadPosRankSum=-0.695;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:1,136:138:99:2598,291,0
chrXIII	917493	.	C	T	2366	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.01;FS=0.000;HaplotypeScore=21.1783;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=19.08;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2399,252,0
chrXIII	917789	.	C	T	486	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=24.29;MQ0=1;QD=8.68;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,55:56:57:519,57,0
chrXIII	917863	.	G	A	83.66	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.50;MQ0=1;QD=2.88;SB=12.46	GT:AD:DP:GQ:PL	1/1:0,28:29:12:116,12,0
chrXIII	918053	.	G	A	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=4.6130;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;MQRankSum=-0.651;QD=0.83;ReadPosRankSum=-1.953;SB=1.24	GT:AD:DP:GQ:PL	1/1:23,2:25:6:52,6,0
chrXIII	918260	.	T	C	334	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.86;MQ0=1;QD=13.92;SB=-7.610e-03	GT:AD:DP:GQ:PL	1/1:1,23:24:39:367,39,0
chrXIII	918322	.	G	A	391	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=1;QD=15.64;SB=-6.792e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:45:424,45,0
chrXIII	918325	.	C	A	396	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=26.96;MQ0=1;QD=14.14;SB=-6.793e-03	GT:AD:DP:GQ:PL	1/1:0,28:28:45:429,45,0
chrXIII	918333	.	G	C	334	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=3;QD=11.93;SB=-7.604e-03	GT:AD:DP:GQ:PL	1/1:2,26:28:39:367,39,0
chrXIII	918341	.	T	A	308	filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.38;MQ0=11;QD=9.62;SB=-8.666e-03	GT:AD:DP:GQ:PL	1/1:3,29:32:36:341,36,0
chrXIII	918407	.	A	G	1175.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;DP=130;Dels=0.00;FS=2.617;HaplotypeScore=14.4908;MLEAC=1;MLEAF=0.500;MQ=28.40;MQ0=26;MQRankSum=0.289;QD=9.04;ReadPosRankSum=-0.822;SB=-2.540e+02	GT:AD:DP:GQ:PL	0/1:38,90:130:99:1205,0,397
chrXIII	918497	.	T	C	1233	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.689;DP=86;Dels=0.00;FS=5.064;HaplotypeScore=13.1658;MLEAC=2;MLEAF=1.00;MQ=21.81;MQ0=18;MQRankSum=-0.634;QD=14.34;ReadPosRankSum=3.407;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:5,81:86:99:1266,150,0
chrXIII	918507	.	T	C	607.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.849;DP=81;Dels=0.00;FS=3.872;HaplotypeScore=8.8617;MLEAC=1;MLEAF=0.500;MQ=18.83;MQ0=33;MQRankSum=1.994;QD=7.49;ReadPosRankSum=1.855;SB=-2.640e+02	GT:AD:DP:GQ:PL	0/1:18,61:81:84:637,0,84
chrXIII	918513	.	G	A	451.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.628;DP=83;Dels=0.00;FS=6.459;HaplotypeScore=2.3857;MLEAC=1;MLEAF=0.500;MQ=17.32;MQ0=43;MQRankSum=1.555;QD=5.43;ReadPosRankSum=1.879;SB=-2.280e+02	GT:AD:DP:GQ:PL	0/1:25,57:83:99:481,0,110
chrXIII	918585	.	G	A	36.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DP=98;Dels=0.00;FS=3.010;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=6.86;MQ0=88;MQRankSum=0.741;QD=0.37;ReadPosRankSum=0.000;SB=-1.897e+01	GT:AD:DP:GQ:PL	0/1:58,39:98:34:66,0,34
chrXIII	918738	.	A	G	222.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.32;MQ0=61;MQRankSum=0.867;QD=2.22;ReadPosRankSum=-0.107;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:40,59:100:76:252,0,76
chrXIII	918791	.	T	A	599.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=17.21;MQ0=60;MQRankSum=0.283;QD=4.50;ReadPosRankSum=1.741;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:43,90:133:77:629,0,77
chrXIII	918843	.	G	A	379.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=18.53;MQ0=40;MQRankSum=0.372;QD=3.75;ReadPosRankSum=-3.439;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:28,73:101:99:409,0,99
chrXIII	918891	.	C	G	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=8.6642;MLEAC=1;MLEAF=0.500;MQ=17.76;MQ0=19;MQRankSum=-1.196;QD=0.29;ReadPosRankSum=1.196;SB=-7.382e-03	GT:AD:DP:GQ:PL	0/1:12,26:39:34:41,0,34
chrXIII	920069	.	G	A	174.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.880;DP=84;Dels=0.00;FS=5.401;HaplotypeScore=14.0868;MLEAC=1;MLEAF=0.500;MQ=14.64;MQ0=39;MQRankSum=0.182;QD=2.07;ReadPosRankSum=0.322;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,28:84:99:204,0,521
chrXIII	920657	.	T	C	75.26	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.18;MQ0=0;QD=10.75;SB=-4.276e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:15:108,15,0
chrXIII	920696	.	A	G	75.26	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=1;QD=12.54;SB=-2.176e+01	GT:AD:DP:GQ:PL	1/1:1,5:6:15:108,15,0
chrXIII	920702	.	C	T	75.26	PASS	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.52;MQ0=1;QD=12.54;SB=-2.176e+01	GT:AD:DP:GQ:PL	1/1:1,5:6:15:108,15,0
chrXIII	920726	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.00;MQ0=0;QD=6.02;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:43,6,0
chrXIII	920978	.	C	T	44.97	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=2;QD=8.99;SB=-2.121e+01	GT:AD:DP:GQ:PL	1/1:0,5:5:9:77,9,0
chrXIII	921041	.	A	T	192.03	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=27.07;MQ0=1;QD=10.67;SB=-6.804e+01	GT:AD:DP:GQ:PL	1/1:1,17:18:24:225,24,0
chrXIII	921056	.	G	A	271	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.408;DP=26;Dels=0.00;FS=41.021;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=1;MQRankSum=1.520;QD=10.42;ReadPosRankSum=-0.704;SB=-1.084e-02	GT:AD:DP:GQ:PL	1/1:5,21:26:33:304,33,0
chrXIII	921206	.	A	G	128.13	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,6:6:18:161,18,0
chrXIII	921777	.	C	T	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.995;DP=69;Dels=0.00;FS=11.473;HaplotypeScore=5.0877;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=28;MQRankSum=-2.333;QD=0.21;ReadPosRankSum=-1.339;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:52,16:69:44:44,0,471
chrXIII	921790	.	C	T	17.09	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.456;DP=74;Dels=0.00;FS=9.709;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=23.21;MQ0=32;MQRankSum=-3.143;QD=0.23;ReadPosRankSum=-0.926;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,21:74:47:47,0,421
chrXIII	921793	.	G	T	21.04	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.196;DP=75;Dels=0.00;FS=10.084;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=22.68;MQ0=34;MQRankSum=-2.492;QD=0.28;ReadPosRankSum=-0.948;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:54,21:75:51:51,0,427
chrXIII	921794	.	C	T	22.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;DP=78;Dels=0.00;FS=10.414;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=22.61;MQ0=36;MQRankSum=-3.229;QD=0.28;ReadPosRankSum=-1.007;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:56,22:78:52:52,0,439
chrXIII	921796	.	G	A	22.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;DP=77;Dels=0.00;FS=10.084;HaplotypeScore=1.6828;MLEAC=1;MLEAF=0.500;MQ=22.51;MQ0=36;MQRankSum=-2.248;QD=0.29;ReadPosRankSum=0.325;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:56,21:77:52:52,0,400
chrXIII	921831	.	T	A	111.02	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;DP=125;Dels=0.00;FS=13.573;HaplotypeScore=19.3287;MLEAC=1;MLEAF=0.500;MQ=24.42;MQ0=39;MQRankSum=-0.971;QD=0.89;ReadPosRankSum=1.880;SB=-2.020e-02	GT:AD:DP:GQ:PL	0/1:70,55:125:22:141,0,22
chrXIII	921835	.	T	C	145.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.784;DP=124;Dels=0.00;FS=13.419;HaplotypeScore=15.7403;MLEAC=2;MLEAF=1.00;MQ=24.38;MQ0=39;MQRankSum=-2.004;QD=1.17;ReadPosRankSum=1.447;SB=2.94	GT:AD:DP:GQ:PL	1/1:69,54:124:21:178,21,0
chrXIII	921836	.	T	C	149.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.204;DP=124;Dels=0.00;FS=13.146;HaplotypeScore=10.7300;MLEAC=2;MLEAF=1.00;MQ=24.52;MQ0=38;MQRankSum=-2.363;QD=1.20;ReadPosRankSum=1.139;SB=2.94	GT:AD:DP:GQ:PL	1/1:68,54:124:21:182,21,0
chrXIII	921838	.	C	T	52.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.898;DP=122;Dels=0.01;FS=9.441;HaplotypeScore=5.2866;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=36;MQRankSum=-2.656;QD=0.43;ReadPosRankSum=-0.125;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,57:121:82:82,0,650
chrXIII	921841	.	A	C	86.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.761;DP=127;Dels=0.00;FS=9.738;HaplotypeScore=3.3760;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=35;MQRankSum=-1.093;QD=0.68;ReadPosRankSum=0.072;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:65,61:127:99:116,0,647
chrXIII	921847	.	G	A	55.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.949;DP=118;Dels=0.00;FS=4.329;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=34;MQRankSum=-2.753;QD=0.47;ReadPosRankSum=-0.315;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:64,54:118:85:85,0,672
chrXIII	921848	.	T	C	47.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.602;DP=116;Dels=0.00;FS=4.420;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.68;MQ0=33;MQRankSum=-1.417;QD=0.41;ReadPosRankSum=-0.517;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,53:116:77:77,0,708
chrXIII	921849	.	A	C	68.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.251;DP=116;Dels=0.00;FS=4.420;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.68;MQ0=33;MQRankSum=-1.739;QD=0.59;ReadPosRankSum=-0.431;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,53:116:98:98,0,514
chrXIII	921856	.	T	A	51.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.723;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=24.94;MQ0=32;MQRankSum=-2.184;QD=0.42;ReadPosRankSum=-2.753;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:61,60:121:81:81,0,709
chrXIII	921859	.	A	G	49.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.659;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=1;MLEAF=0.500;MQ=25.06;MQ0=32;MQRankSum=-1.204;QD=0.41;ReadPosRankSum=-2.797;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:61,60:121:79:79,0,703
chrXIII	921901	.	G	A	209.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.524;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.4646;MLEAC=1;MLEAF=0.500;MQ=27.50;MQ0=11;MQRankSum=-2.286;QD=1.77;ReadPosRankSum=1.316;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:34,84:118:99:239,0,472
chrXIII	921911	.	C	T	858	filter	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9179;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=2;QD=7.46;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,115:115:93:891,93,0
chrXIII	921927	.	T	A	258.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.17;MQ0=2;MQRankSum=-0.546;QD=2.74;ReadPosRankSum=3.015;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:6,88:94:64:288,0,64
chrXIII	921928	.	G	A	272.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.17;MQ0=2;MQRankSum=0.718;QD=2.89;ReadPosRankSum=3.015;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:6,88:94:61:302,0,61
chrXIII	921943	.	C	T	354	filter	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.17;MQ0=2;QD=3.77;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:2,92:94:39:387,39,0
chrXIII	921949	.	A	C	319	filter	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=28.11;MQ0=2;QD=3.62;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:2,86:88:39:352,39,0
chrXIII	921961	.	T	G	321	filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=4.12;SB=-7.613e-03	GT:AD:DP:GQ:PL	1/1:0,78:78:39:354,39,0
chrXIII	921982	.	G	A	120.13	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=2.40;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,50:50:18:153,18,0
chrXIII	921983	.	C	T	140.13	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;QD=2.80;SB=-1.420e-01	GT:AD:DP:GQ:PL	1/1:0,50:50:18:173,18,0
chrXIII	922056	.	G	A	35.97	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.55;MQ0=0;QD=2.00;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:9:68,9,0
chrXIII	922104	.	A	G	88.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DP=38;Dels=0.00;FS=9.333;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.48;MQ0=0;MQRankSum=-4.917;QD=2.32;ReadPosRankSum=-2.557;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,14:38:99:118,0,449
chrXIII	922110	.	A	C	224.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;DP=53;Dels=0.02;FS=0.000;HaplotypeScore=7.3764;MLEAC=1;MLEAF=0.500;MQ=32.76;MQ0=0;MQRankSum=-5.433;QD=4.23;ReadPosRankSum=-4.579;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:25,25:52:99:254,0,452
chrXIII	922111	.	G	A	439.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;DP=55;Dels=0.02;FS=3.275;HaplotypeScore=7.3764;MLEAC=1;MLEAF=0.500;MQ=32.77;MQ0=0;MQRankSum=5.237;QD=7.98;ReadPosRankSum=4.510;SB=-8.001e+01	GT:AD:DP:GQ:PL	0/1:28,26:54:99:469,0,340
chrXIII	922118	.	T	C	1246	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.532;DP=74;Dels=0.00;FS=30.166;HaplotypeScore=11.9307;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;MQRankSum=1.723;QD=16.84;ReadPosRankSum=3.575;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:5,69:74:99:1279,138,0
chrXIII	922213	.	C	T	3734.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;DP=226;Dels=0.00;FS=2.471;HaplotypeScore=47.8314;MLEAC=1;MLEAF=0.500;MQ=38.39;MQ0=9;MQRankSum=-1.865;QD=16.52;ReadPosRankSum=3.403;SB=-2.110e+03	GT:AD:DP:GQ:PL	0/1:37,187:225:99:3734,0,120
chrXIII	922339	.	C	T	982	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=46;MQRankSum=1.652;QD=11.03;ReadPosRankSum=-0.282;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:22,67:89:99:1015,108,0
chrXIII	922340	.	G	T	965	filter	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.20;MQ0=46;QD=10.84;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:21,68:89:99:998,108,0
chrXIII	922388	.	A	G	396.79	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.363;DP=78;Dels=0.00;FS=13.293;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=14.73;MQ0=41;MQRankSum=-2.031;QD=5.09;ReadPosRankSum=2.253;SB=-7.983e-01	GT:AD:DP:GQ:PL	1/1:17,61:78:10:429,10,0
chrXIII	922448	.	A	G	245	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.16;MQ0=2;QD=9.07;SB=-7.999e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:33:278,33,0
chrXIII	922489	.	T	G	177.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.40;MQ0=0;QD=7.38;SB=-4.093e-02	GT:AD:DP:GQ:PL	1/1:0,24:24:24:210,24,0
chrXIII	922493	.	G	C	335	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=3;QD=8.82;SB=-7.067e-03	GT:AD:DP:GQ:PL	1/1:0,32:38:42:368,42,0
chrXIII	922496	.	A	C	408	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=8;QD=8.33;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,47:49:48:441,48,0
chrXIII	922667	.	C	T	1359	filter	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1984;MLEAC=2;MLEAF=1.00;MQ=29.50;MQ0=11;QD=13.32;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1392,150,0
chrXIII	922726	.	C	A	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DP=92;Dels=0.00;FS=43.134;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=17.87;MQ0=41;MQRankSum=2.265;QD=0.13;ReadPosRankSum=-2.742;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,20:92:42:42,0,212
chrXIII	922751	.	C	T	162.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.212;DP=110;Dels=0.00;FS=69.923;HaplotypeScore=2.4892;MLEAC=1;MLEAF=0.500;MQ=20.16;MQ0=40;MQRankSum=2.671;QD=1.47;ReadPosRankSum=-1.165;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:75,35:110:99:192,0,413
chrXIII	922763	.	T	C	161.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;DP=122;Dels=0.00;FS=63.810;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=42;MQRankSum=2.413;QD=1.32;ReadPosRankSum=0.506;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:79,43:122:99:191,0,544
chrXIII	922772	.	C	T	230.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;DP=131;Dels=0.00;FS=63.355;HaplotypeScore=6.3529;MLEAC=1;MLEAF=0.500;MQ=22.33;MQ0=40;MQRankSum=2.847;QD=1.76;ReadPosRankSum=0.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:79,51:131:99:260,0,626
chrXIII	922883	.	C	T	1913.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.702;DP=267;Dels=0.00;FS=69.664;HaplotypeScore=11.5168;MLEAC=1;MLEAF=0.500;MQ=32.34;MQ0=7;MQRankSum=0.750;QD=7.16;ReadPosRankSum=-0.143;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:171,96:267:99:1943,0,2151
chrXIII	922946	.	C	T	1074.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;DP=200;Dels=0.00;FS=42.893;HaplotypeScore=6.5707;MLEAC=1;MLEAF=0.500;MQ=34.57;MQ0=0;MQRankSum=-3.157;QD=5.37;ReadPosRankSum=0.824;SB=-6.460e+02	GT:AD:DP:GQ:PL	0/1:82,118:200:99:1104,0,1429
chrXIII	922949	.	T	C	1152.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=202;Dels=0.00;FS=48.317;HaplotypeScore=4.2594;MLEAC=1;MLEAF=0.500;MQ=34.62;MQ0=1;MQRankSum=-2.894;QD=5.70;ReadPosRankSum=1.198;SB=-5.810e+02	GT:AD:DP:GQ:PL	0/1:83,118:202:99:1182,0,1407
chrXIII	922967	.	T	C	1205.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.292;DP=216;Dels=0.00;FS=18.973;HaplotypeScore=6.3417;MLEAC=1;MLEAF=0.500;MQ=35.12;MQ0=7;MQRankSum=-4.263;QD=5.58;ReadPosRankSum=0.799;SB=-4.790e+02	GT:AD:DP:GQ:PL	0/1:84,132:216:99:1235,0,1496
chrXIII	923132	.	G	T	5151.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.874;DP=529;Dels=0.00;FS=8.029;HaplotypeScore=26.8706;MLEAC=1;MLEAF=0.500;MQ=41.72;MQ0=10;MQRankSum=-7.476;QD=9.74;ReadPosRankSum=1.435;SB=-2.568e+03	GT:AD:DP:GQ:PL	0/1:170,353:529:99:5151,0,2760
chrXIII	923175	.	C	A	386.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.137;DP=338;Dels=0.00;FS=2.046;HaplotypeScore=172.3254;MLEAC=1;MLEAF=0.500;MQ=43.19;MQ0=1;MQRankSum=-8.592;QD=1.14;ReadPosRankSum=-7.665;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:239,98:338:99:416,0,5011
chrXIII	923178	.	A	G	171.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.217;DP=310;Dels=0.00;FS=0.500;HaplotypeScore=148.3896;MLEAC=1;MLEAF=0.500;MQ=43.13;MQ0=0;MQRankSum=-9.165;QD=0.55;ReadPosRankSum=-5.548;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:238,72:310:99:201,0,5341
chrXIII	923183	.	A	G	2326.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670;DP=273;Dels=0.00;FS=13.352;HaplotypeScore=104.8020;MLEAC=1;MLEAF=0.500;MQ=43.35;MQ0=0;MQRankSum=-10.004;QD=8.52;ReadPosRankSum=0.870;SB=-5.600e+02	GT:AD:DP:GQ:PL	0/1:123,148:273:99:2356,0,2359
chrXIII	923213	.	T	A	1862.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.194;DP=193;Dels=0.00;FS=21.723;HaplotypeScore=46.0683;MLEAC=1;MLEAF=0.500;MQ=46.45;MQ0=0;MQRankSum=-6.847;QD=9.65;ReadPosRankSum=0.498;SB=-3.850e+02	GT:AD:DP:GQ:PL	0/1:91,89:193:99:1892,0,1742
chrXIII	923260	.	G	A	847.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;DP=141;Dels=0.00;FS=5.122;HaplotypeScore=6.7662;MLEAC=1;MLEAF=0.500;MQ=48.13;MQ0=0;MQRankSum=-7.375;QD=6.01;ReadPosRankSum=-0.593;SB=-5.110e+02	GT:AD:DP:GQ:PL	0/1:79,61:141:99:877,0,1461
chrXIII	923269	.	A	G	759.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;DP=146;Dels=0.00;FS=3.031;HaplotypeScore=12.4369;MLEAC=1;MLEAF=0.500;MQ=49.13;MQ0=0;MQRankSum=-7.620;QD=5.20;ReadPosRankSum=1.905;SB=-4.110e+02	GT:AD:DP:GQ:PL	0/1:89,57:146:99:789,0,1645
chrXIII	923299	.	T	C	1289.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.538;DP=182;Dels=0.00;FS=9.146;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=48.21;MQ0=0;MQRankSum=-9.866;QD=7.08;ReadPosRankSum=-1.415;SB=-3.850e+02	GT:AD:DP:GQ:PL	0/1:98,84:182:99:1319,0,1805
chrXIII	923305	.	A	C	1397.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.786;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=22.0283;MLEAC=1;MLEAF=0.500;MQ=46.82;MQ0=0;MQRankSum=-10.537;QD=6.95;ReadPosRankSum=-3.871;SB=-4.490e+02	GT:AD:DP:GQ:PL	0/1:94,104:201:99:1427,0,1791
chrXIII	923430	.	A	G	2718.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.426;DP=219;Dels=0.00;FS=28.203;HaplotypeScore=16.8875;MLEAC=1;MLEAF=0.500;MQ=42.69;MQ0=2;MQRankSum=3.206;QD=12.41;ReadPosRankSum=5.324;SB=-5.470e+02	GT:AD:DP:GQ:PL	0/1:56,163:219:99:2748,0,692
chrXIII	923455	.	G	A	717.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.783;DP=162;Dels=0.00;FS=78.308;HaplotypeScore=3.8198;MLEAC=1;MLEAF=0.500;MQ=44.43;MQ0=2;MQRankSum=-5.846;QD=4.43;ReadPosRankSum=-0.697;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:105,56:162:99:747,0,1791
chrXIII	923469	.	T	A	609.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;DP=149;Dels=0.00;FS=98.349;HaplotypeScore=8.6208;MLEAC=1;MLEAF=0.500;MQ=48.03;MQ0=0;MQRankSum=-9.958;QD=4.09;ReadPosRankSum=-2.893;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:88,61:149:99:639,0,1741
chrXIII	923473	.	C	T	447.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.817;DP=144;Dels=0.00;FS=90.511;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=49.27;MQ0=0;MQRankSum=-10.100;QD=3.10;ReadPosRankSum=-3.149;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:88,56:144:99:477,0,1652
chrXIII	923478	.	G	T	381.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.921;DP=145;Dels=0.00;FS=73.757;HaplotypeScore=12.0501;MLEAC=1;MLEAF=0.500;MQ=51.20;MQ0=0;MQRankSum=-8.786;QD=2.63;ReadPosRankSum=-2.256;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:92,52:145:99:411,0,1717
chrXIII	923489	.	A	G	412.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;DP=169;Dels=0.01;FS=120.480;HaplotypeScore=14.0884;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=0;MQRankSum=-6.737;QD=2.44;ReadPosRankSum=-1.865;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:106,62:168:99:442,0,2037
chrXIII	923490	.	C	T	443.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.243;DP=174;Dels=0.01;FS=120.746;HaplotypeScore=14.0884;MLEAC=1;MLEAF=0.500;MQ=53.04;MQ0=0;MQRankSum=-6.296;QD=2.55;ReadPosRankSum=-2.466;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:106,67:173:99:473,0,1951
chrXIII	923508	.	A	C	981.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.478;DP=210;Dels=0.00;FS=104.092;HaplotypeScore=14.4965;MLEAC=1;MLEAF=0.500;MQ=52.46;MQ0=0;MQRankSum=-8.466;QD=4.67;ReadPosRankSum=-0.325;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:122,88:210:99:1011,0,2221
chrXIII	923589	.	G	A	1050.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.652;DP=327;Dels=0.00;FS=356.033;HaplotypeScore=135.8106;MLEAC=1;MLEAF=0.500;MQ=48.04;MQ0=0;MQRankSum=-10.419;QD=3.21;ReadPosRankSum=1.168;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:243,84:327:99:1080,0,4176
chrXIII	923602	.	T	G	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.732;DP=311;Dels=0.00;FS=368.834;HaplotypeScore=89.1423;MLEAC=1;MLEAF=0.500;MQ=48.82;MQ0=0;MQRankSum=-11.926;QD=0.09;ReadPosRankSum=-1.868;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:207,102:311:57:57,0,4574
chrXIII	923606	.	A	T	1408.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.756;DP=311;Dels=0.00;FS=376.531;HaplotypeScore=89.7506;MLEAC=1;MLEAF=0.500;MQ=48.36;MQ0=0;MQRankSum=-12.579;QD=4.53;ReadPosRankSum=-2.875;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:204,107:311:99:1438,0,4392
chrXIII	923629	.	A	T	1299.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.119;DP=310;Dels=0.00;FS=447.747;HaplotypeScore=108.6346;MLEAC=1;MLEAF=0.500;MQ=46.83;MQ0=0;MQRankSum=-11.350;QD=4.19;ReadPosRankSum=1.388;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:202,107:310:99:1329,0,4467
chrXIII	923636	.	C	A	1113.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=10.820;DP=295;Dels=0.00;FS=421.263;HaplotypeScore=21.3961;MLEAC=1;MLEAF=0.500;MQ=46.25;MQ0=0;MQRankSum=-11.006;QD=3.77;ReadPosRankSum=1.688;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:190,104:294:99:1143,0,3830
chrXIII	923652	.	T	G	2750.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;DP=300;Dels=0.00;FS=106.954;HaplotypeScore=157.2879;MLEAC=1;MLEAF=0.500;MQ=41.75;MQ0=0;MQRankSum=8.723;QD=9.17;ReadPosRankSum=6.387;SB=-6.360e+02	GT:AD:DP:GQ:PL	0/1:153,144:300:99:2780,0,1065
chrXIII	923654	.	T	C	4672.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.049;DP=288;Dels=0.00;FS=131.993;HaplotypeScore=153.9285;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=0;MQRankSum=4.345;QD=16.22;ReadPosRankSum=10.083;SB=-2.153e+03	GT:AD:DP:GQ:PL	1/1:51,237:288:99:4672,455,0
chrXIII	923675	.	C	T	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DP=168;Dels=0.01;FS=0.000;HaplotypeScore=41.7094;MLEAC=1;MLEAF=0.500;MQ=40.55;MQ0=1;MQRankSum=-1.494;QD=0.08;ReadPosRankSum=-2.558;SB=-3.801e+01	GT:AD:DP:GQ:PL	0/1:151,15:167:44:44,0,1764
chrXIII	923679	.	T	C	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=43.4715;MLEAC=1;MLEAF=0.500;MQ=39.63;MQ0=1;MQRankSum=-2.179;QD=0.20;ReadPosRankSum=-0.937;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:153,13:166:63:63,0,1824
chrXIII	923710	.	G	A	298.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.775;DP=124;Dels=0.00;FS=9.891;HaplotypeScore=44.7705;MLEAC=1;MLEAF=0.500;MQ=38.14;MQ0=2;MQRankSum=-1.628;QD=2.40;ReadPosRankSum=2.668;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:99,25:124:99:328,0,1652
chrXIII	923712	.	T	C	140.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.282;DP=130;Dels=0.00;FS=22.897;HaplotypeScore=45.5592;MLEAC=1;MLEAF=0.500;MQ=37.96;MQ0=3;MQRankSum=-4.573;QD=1.08;ReadPosRankSum=4.078;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:103,27:130:99:170,0,1913
chrXIII	923857	.	A	G	90.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;DP=198;Dels=0.00;FS=22.015;HaplotypeScore=19.1083;MLEAC=1;MLEAF=0.500;MQ=46.19;MQ0=1;MQRankSum=-7.649;QD=0.45;ReadPosRankSum=-1.001;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:161,37:198:99:120,0,3239
chrXIII	923874	.	G	C	79.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;DP=197;Dels=0.00;FS=22.216;HaplotypeScore=11.8587;MLEAC=1;MLEAF=0.500;MQ=45.96;MQ0=1;MQRankSum=-7.340;QD=0.40;ReadPosRankSum=5.464;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:160,37:197:99:109,0,3130
chrXIII	923934	.	A	T	1092.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;DP=223;Dels=0.00;FS=72.662;HaplotypeScore=31.6846;MLEAC=1;MLEAF=0.500;MQ=41.59;MQ0=0;MQRankSum=-7.003;QD=4.90;ReadPosRankSum=-0.269;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:144,73:223:99:1122,0,2545
chrXIII	923948	.	A	T	875.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.366;DP=191;Dels=0.00;FS=42.916;HaplotypeScore=24.2084;MLEAC=1;MLEAF=0.500;MQ=42.13;MQ0=0;MQRankSum=-6.847;QD=4.58;ReadPosRankSum=6.993;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:129,62:191:99:905,0,2310
chrXIII	923969	.	A	G	3140	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.01;FS=0.000;HaplotypeScore=188.9790;MLEAC=2;MLEAF=1.00;MQ=39.23;MQ0=1;QD=19.15;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3173,336,0
chrXIII	923987	.	G	A	984.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=139;Dels=0.00;FS=38.639;HaplotypeScore=15.9511;MLEAC=1;MLEAF=0.500;MQ=35.00;MQ0=2;MQRankSum=1.327;QD=7.08;ReadPosRankSum=3.278;SB=-4.210e+02	GT:AD:DP:GQ:PL	0/1:59,80:139:99:1014,0,921
chrXIII	924037	.	G	C	497	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=21.4971;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=2;QD=10.14;SB=-2.201e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:60:530,60,0
chrXIII	924039	.	A	G	224.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.566;DP=49;Dels=0.00;FS=12.236;HaplotypeScore=19.5641;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=2;MQRankSum=0.509;QD=4.57;ReadPosRankSum=1.658;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,28:49:99:254,0,179
chrXIII	924046	.	G	A	100.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;DP=57;Dels=0.00;FS=2.414;HaplotypeScore=22.8037;MLEAC=1;MLEAF=0.500;MQ=25.88;MQ0=1;MQRankSum=1.847;QD=1.75;ReadPosRankSum=-2.346;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,13:57:99:130,0,441
chrXIII	924055	.	C	G	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DP=55;Dels=0.00;FS=6.566;HaplotypeScore=53.6988;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=0;MQRankSum=-0.120;QD=0.36;ReadPosRankSum=1.953;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:45,10:55:50:50,0,548
chrXIII	924057	.	G	C	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DP=58;Dels=0.00;FS=6.954;HaplotypeScore=40.0407;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=0;MQRankSum=-0.196;QD=0.35;ReadPosRankSum=1.781;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:48,10:58:50:50,0,540
chrXIII	924058	.	A	T	226.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;DP=59;Dels=0.00;FS=12.824;HaplotypeScore=40.0407;MLEAC=1;MLEAF=0.500;MQ=26.66;MQ0=0;MQRankSum=2.130;QD=3.83;ReadPosRankSum=0.190;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:30,29:59:99:256,0,378
chrXIII	924062	.	T	G	45.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;DP=66;Dels=0.00;FS=7.191;HaplotypeScore=45.4829;MLEAC=1;MLEAF=0.500;MQ=26.92;MQ0=0;MQRankSum=-1.549;QD=0.68;ReadPosRankSum=2.082;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:55,11:66:75:75,0,601
chrXIII	924063	.	G	A	16.11	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;DP=67;Dels=0.00;FS=8.029;HaplotypeScore=45.4829;MLEAC=1;MLEAF=0.500;MQ=26.95;MQ0=0;MQRankSum=-0.326;QD=0.24;ReadPosRankSum=2.208;SB=-6.508e-03	GT:AD:DP:GQ:PL	0/1:57,10:67:46:46,0,631
chrXIII	924072	.	A	G	748	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.675;DP=67;Dels=0.00;FS=30.886;HaplotypeScore=26.0339;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=0;MQRankSum=2.686;QD=11.16;ReadPosRankSum=-0.463;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:4,63:67:34:781,34,0
chrXIII	924074	.	G	T	693	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.308;DP=66;Dels=0.00;FS=36.605;HaplotypeScore=8.5471;MLEAC=2;MLEAF=1.00;MQ=27.16;MQ0=0;MQRankSum=2.278;QD=10.50;ReadPosRankSum=-1.785;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:3,63:66:34:726,34,0
chrXIII	924078	.	A	G	952	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=24.7852;MLEAC=2;MLEAF=1.00;MQ=27.46;MQ0=0;QD=12.05;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:985,108,0
chrXIII	924080	.	C	T	102.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;DP=79;Dels=0.00;FS=2.372;HaplotypeScore=23.7859;MLEAC=1;MLEAF=0.500;MQ=27.46;MQ0=0;MQRankSum=0.304;QD=1.29;ReadPosRankSum=3.227;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:62,17:79:99:132,0,585
chrXIII	924086	.	A	G	398.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;DP=82;Dels=0.00;FS=17.965;HaplotypeScore=44.3779;MLEAC=1;MLEAF=0.500;MQ=27.10;MQ0=0;MQRankSum=3.159;QD=4.85;ReadPosRankSum=-1.416;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,45:82:99:428,0,351
chrXIII	924092	.	T	C	475.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.842;DP=82;Dels=0.04;FS=0.000;HaplotypeScore=30.8753;MLEAC=1;MLEAF=0.500;MQ=27.10;MQ0=0;MQRankSum=2.612;QD=5.79;ReadPosRankSum=-0.037;SB=-5.001e+01	GT:AD:DP:GQ:PL	0/1:30,48:79:99:505,0,275
chrXIII	924093	.	A	C	87.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.207;DP=90;Dels=0.03;FS=2.381;HaplotypeScore=32.7641;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=0;MQRankSum=1.605;QD=0.97;ReadPosRankSum=2.364;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,17:87:99:117,0,703
chrXIII	924101	.	T	A	539.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=43.0172;MLEAC=1;MLEAF=0.500;MQ=26.49;MQ0=0;MQRankSum=3.126;QD=5.61;ReadPosRankSum=1.444;SB=-5.001e+01	GT:AD:DP:GQ:PL	0/1:41,55:96:99:569,0,304
chrXIII	924107	.	T	C	75.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.263;DP=100;Dels=0.00;FS=2.365;HaplotypeScore=46.6396;MLEAC=1;MLEAF=0.500;MQ=26.41;MQ0=0;MQRankSum=2.908;QD=0.75;ReadPosRankSum=1.362;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,19:100:99:105,0,764
chrXIII	924110	.	G	A	49.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=45.8074;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=0;MQRankSum=3.083;QD=0.49;ReadPosRankSum=0.330;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,16:101:79:79,0,820
chrXIII	924112	.	A	G	539.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=101;Dels=0.00;FS=19.153;HaplotypeScore=29.2801;MLEAC=1;MLEAF=0.500;MQ=26.44;MQ0=0;MQRankSum=4.839;QD=5.34;ReadPosRankSum=1.150;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:43,58:101:99:569,0,258
chrXIII	924138	.	C	T	471.03	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.433;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=58.3431;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=0;MQRankSum=3.456;QD=6.93;ReadPosRankSum=-3.286;SB=-3.377e-02	GT:AD:DP:GQ:PL	0/1:19,47:66:19:501,0,19
chrXIII	924140	.	A	G	651	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.292;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=48.4753;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=0;MQRankSum=-0.162;QD=9.57;ReadPosRankSum=0.919;SB=1.19	GT:AD:DP:GQ:PL	1/1:6,62:68:58:684,58,0
chrXIII	924143	.	G	A	529.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=50.0961;MLEAC=1;MLEAF=0.500;MQ=26.59;MQ0=0;MQRankSum=4.206;QD=7.67;ReadPosRankSum=-2.654;SB=-8.690e-03	GT:AD:DP:GQ:PL	0/1:21,48:69:30:559,0,30
chrXIII	924146	.	T	G	564.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=43.8651;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=0;MQRankSum=4.127;QD=8.06;ReadPosRankSum=-1.640;SB=-1.338e-02	GT:AD:DP:GQ:PL	0/1:21,49:70:25:594,0,25
chrXIII	924147	.	G	A	555.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=42.8986;MLEAC=1;MLEAF=0.500;MQ=26.48;MQ0=0;MQRankSum=4.178;QD=7.93;ReadPosRankSum=-1.410;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,49:70:76:585,0,76
chrXIII	924155	.	C	T	777	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.512;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=12.6432;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=0;MQRankSum=1.378;QD=8.73;ReadPosRankSum=-0.551;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,87:89:90:810,90,0
chrXIII	924172	.	G	C	602.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.316;DP=88;Dels=0.00;FS=6.435;HaplotypeScore=63.3576;MLEAC=1;MLEAF=0.500;MQ=26.96;MQ0=0;MQRankSum=5.252;QD=6.84;ReadPosRankSum=1.339;SB=-3.013e+00	GT:AD:DP:GQ:PL	0/1:20,68:88:41:632,0,41
chrXIII	924183	.	C	T	709	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.5857;MLEAC=2;MLEAF=1.00;MQ=27.39;MQ0=0;QD=8.44;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,84:84:78:742,78,0
chrXIII	924184	.	G	T	488.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;DP=84;Dels=0.00;FS=7.202;HaplotypeScore=12.5857;MLEAC=1;MLEAF=0.500;MQ=27.39;MQ0=0;MQRankSum=4.551;QD=5.81;ReadPosRankSum=2.386;SB=-3.019e+00	GT:AD:DP:GQ:PL	0/1:16,68:84:30:518,0,30
chrXIII	924189	.	G	A	556.26	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.649;DP=87;Dels=0.00;FS=8.256;HaplotypeScore=15.2677;MLEAC=2;MLEAF=1.00;MQ=27.49;MQ0=0;MQRankSum=4.435;QD=6.39;ReadPosRankSum=2.863;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:13,74:87:15:589,15,0
chrXIII	924196	.	G	T	570	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.014;DP=84;Dels=0.00;FS=19.138;HaplotypeScore=10.8563;MLEAC=2;MLEAF=1.00;MQ=28.36;MQ0=0;MQRankSum=-0.676;QD=6.79;ReadPosRankSum=-0.127;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:1,81:84:66:603,66,0
chrXIII	924216	.	G	A	549	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.705;DP=90;Dels=0.00;FS=26.026;HaplotypeScore=9.3092;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;MQRankSum=1.638;QD=6.10;ReadPosRankSum=1.392;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:5,85:90:63:582,63,0
chrXIII	924224	.	C	G	532	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.0095;MLEAC=2;MLEAF=1.00;MQ=28.01;MQ0=0;QD=6.65;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,80:80:60:565,60,0
chrXIII	924239	.	G	A	565	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.712;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=9.1691;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;MQRankSum=3.217;QD=8.31;ReadPosRankSum=1.855;SB=-7.209e-03	GT:AD:DP:GQ:PL	1/1:7,61:68:41:598,41,0
chrXIII	924242	.	A	G	542	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2477;MLEAC=2;MLEAF=1.00;MQ=28.10;MQ0=0;MQRankSum=1.676;QD=8.47;ReadPosRankSum=1.676;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:1,61:64:63:575,63,0
chrXIII	924243	.	A	T	588	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.7798;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=1.392;QD=9.33;ReadPosRankSum=1.619;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:1,60:63:66:621,66,0
chrXIII	924252	.	C	T	563	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;QD=9.08;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,60:62:63:596,63,0
chrXIII	924264	.	A	T	455	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=109.8263;MLEAC=2;MLEAF=1.00;MQ=28.13;MQ0=0;MQRankSum=-2.104;QD=9.10;ReadPosRankSum=2.352;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:2,48:50:54:488,54,0
chrXIII	924283	.	G	A	90.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=104.5170;MLEAC=1;MLEAF=0.500;MQ=27.84;MQ0=0;MQRankSum=0.269;QD=2.25;ReadPosRankSum=-2.907;SB=-6.524e-03	GT:AD:DP:GQ:PL	0/1:26,14:40:57:120,0,57
chrXIII	924287	.	G	A	35.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.213;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=42.1682;MLEAC=1;MLEAF=0.500;MQ=28.10;MQ0=0;MQRankSum=2.144;QD=0.92;ReadPosRankSum=4.509;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:16,22:38:65:65,0,87
chrXIII	924288	.	G	T	163.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.193;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=28.6371;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;MQRankSum=-0.770;QD=4.53;ReadPosRankSum=0.866;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:1,35:36:21:196,21,0
chrXIII	924294	.	G	A	68.11	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=15.1416;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=-0.420;QD=1.95;ReadPosRankSum=3.524;SB=-1.031e-01	GT:AD:DP:GQ:PL	0/1:10,25:35:13:98,0,13
chrXIII	924324	.	T	G	374.02	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.425;DP=52;Dels=0.00;FS=15.441;HaplotypeScore=18.3020;MLEAC=2;MLEAF=1.00;MQ=25.87;MQ0=2;MQRankSum=3.567;QD=7.19;ReadPosRankSum=-4.794;SB=2.98	GT:AD:DP:GQ:PL	1/1:17,35:52:26:407,26,0
chrXIV	6369	.	C	A	48.97	filter	AC=2;AF=1.00;AN=2;DP=523;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=2.12;MQ0=517;QD=0.09;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:488,35:523:9:81,9,0
chrXIV	6415	.	C	A	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=426;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=1.61;MQ0=423;QD=0.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:5,421:426:6:53,6,0
chrXIV	6552	.	A	G	150.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DP=232;Dels=0.00;FS=43.073;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=15.17;MQ0=180;MQRankSum=3.076;QD=0.65;ReadPosRankSum=-2.987;SB=-1.622e+01	GT:AD:DP:GQ:PL	0/1:217,14:232:99:180,0,588
chrXIV	6582	.	A	G	349.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;DP=166;Dels=0.00;FS=22.024;HaplotypeScore=2.5721;MLEAC=1;MLEAF=0.500;MQ=18.92;MQ0=109;MQRankSum=1.714;QD=2.10;ReadPosRankSum=0.159;SB=-1.720e+02	GT:AD:DP:GQ:PL	0/1:144,22:166:99:379,0,607
chrXIV	6731	.	G	C	55.51	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=24.4154;MLEAC=2;MLEAF=1.00;MQ=21.49;MQ0=1;QD=1.91;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:0,26:29:12:88,12,0
chrXIV	6786	.	C	T	552.98	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.026;DP=82;Dels=0.00;FS=25.101;HaplotypeScore=56.7209;MLEAC=1;MLEAF=0.500;MQ=20.64;MQ0=4;MQRankSum=2.473;QD=6.74;ReadPosRankSum=2.056;SB=-6.997e+01	GT:AD:DP:GQ:PL	0/1:28,54:82:3:582,0,3
chrXIV	6818	.	A	T	624	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.272;DP=90;Dels=0.00;FS=22.747;HaplotypeScore=14.0379;MLEAC=2;MLEAF=1.00;MQ=19.08;MQ0=5;MQRankSum=-0.479;QD=6.93;ReadPosRankSum=1.470;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:4,53:90:51:657,51,0
chrXIV	6832	.	T	C	58.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;DP=60;Dels=0.00;FS=4.715;HaplotypeScore=42.4161;MLEAC=1;MLEAF=0.500;MQ=15.28;MQ0=3;MQRankSum=1.673;QD=0.97;ReadPosRankSum=-2.075;SB=-4.151e+01	GT:AD:DP:GQ:PL	0/1:10,49:60:25:88,0,25
chrXIV	6906	.	G	C	593	SnpCluster	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=75.7746;MLEAC=2;MLEAF=1.00;MQ=24.64;MQ0=0;QD=5.65;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:78:626,78,0
chrXIV	6912	.	C	G	427.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;DP=114;Dels=0.00;FS=43.514;HaplotypeScore=68.7656;MLEAC=1;MLEAF=0.500;MQ=26.28;MQ0=0;MQRankSum=-4.939;QD=3.75;ReadPosRankSum=6.761;SB=-3.618e+02	GT:AD:DP:GQ:PL	0/1:44,70:114:99:457,0,126
chrXIV	6914	.	G	C	425.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;DP=120;Dels=0.00;FS=49.182;HaplotypeScore=84.2859;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=0;MQRankSum=-5.234;QD=3.54;ReadPosRankSum=7.086;SB=-3.620e+02	GT:AD:DP:GQ:PL	0/1:47,70:120:99:455,0,162
chrXIV	6924	.	A	G	405.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;DP=134;Dels=0.00;FS=57.489;HaplotypeScore=28.6906;MLEAC=1;MLEAF=0.500;MQ=27.28;MQ0=3;MQRankSum=-5.678;QD=3.02;ReadPosRankSum=5.152;SB=-2.890e+02	GT:AD:DP:GQ:PL	0/1:64,70:134:99:435,0,282
chrXIV	6940	.	C	T	339.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.480;DP=174;Dels=0.00;FS=34.708;HaplotypeScore=15.7123;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=10;MQRankSum=7.094;QD=1.95;ReadPosRankSum=4.835;SB=-2.530e+02	GT:AD:DP:GQ:PL	0/1:112,62:174:99:369,0,475
chrXIV	6992	.	C	G	284.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254;DP=240;Dels=0.00;FS=16.267;HaplotypeScore=96.5102;MLEAC=1;MLEAF=0.500;MQ=21.56;MQ0=31;MQRankSum=2.837;QD=1.18;ReadPosRankSum=-1.180;SB=-1.540e+02	GT:AD:DP:GQ:PL	0/1:200,38:240:99:314,0,1155
chrXIV	7010	.	T	C	1219	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.334;DP=227;Dels=0.00;FS=10.824;HaplotypeScore=259.8723;MLEAC=2;MLEAF=1.00;MQ=19.52;MQ0=35;MQRankSum=4.602;QD=5.37;ReadPosRankSum=2.674;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:90,137:227:42:1252,42,0
chrXIV	7057	.	T	C	313	filter	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=16.6529;MLEAC=2;MLEAF=1.00;MQ=19.30;MQ0=26;QD=3.26;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:36:346,36,0
chrXIV	7071	.	A	T	182.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;DP=68;Dels=0.00;FS=10.106;HaplotypeScore=39.5410;MLEAC=1;MLEAF=0.500;MQ=23.62;MQ0=12;MQRankSum=1.279;QD=2.68;ReadPosRankSum=-2.330;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,23:68:99:212,0,121
chrXIV	7096	.	G	A	97.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=12.5784;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=3;QD=4.05;SB=-1.573e+02	GT:AD:DP:GQ:PL	1/1:0,22:23:15:130,15,0
chrXIV	7098	.	C	T	107.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=12.6703;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=3;QD=4.47;SB=-1.993e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:15:140,15,0
chrXIV	7099	.	A	C	102.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=11.6969;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=3;QD=4.26;SB=-1.813e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:15:135,15,0
chrXIV	7101	.	A	C	97.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.04;FS=0.000;HaplotypeScore=34.6906;MLEAC=2;MLEAF=1.00;MQ=25.01;MQ0=3;QD=4.05;SB=-1.803e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:15:130,15,0
chrXIV	7122	.	G	A	143.02	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;DP=62;Dels=0.02;FS=6.071;HaplotypeScore=57.2462;MLEAC=1;MLEAF=0.500;MQ=22.54;MQ0=13;MQRankSum=3.011;QD=2.31;ReadPosRankSum=0.555;SB=-2.039e+02	GT:AD:DP:GQ:PL	0/1:20,41:61:24:173,0,24
chrXIV	7154	.	C	T	42.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.675;DP=148;Dels=0.00;FS=108.827;HaplotypeScore=84.0349;MLEAC=1;MLEAF=0.500;MQ=17.29;MQ0=21;MQRankSum=4.604;QD=0.28;ReadPosRankSum=3.851;SB=-6.502e-03	GT:AD:DP:GQ:PL	0/1:114,34:148:72:72,0,288
chrXIV	7155	.	C	T	294.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.439;DP=149;Dels=0.00;FS=20.571;HaplotypeScore=84.9015;MLEAC=1;MLEAF=0.500;MQ=17.22;MQ0=22;MQRankSum=7.055;QD=1.97;ReadPosRankSum=6.573;SB=-4.864e+02	GT:AD:DP:GQ:PL	0/1:64,85:149:53:324,0,53
chrXIV	7157	.	A	G	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;DP=160;Dels=0.00;FS=117.611;HaplotypeScore=64.4169;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=23;MQRankSum=4.095;QD=0.24;ReadPosRankSum=3.951;SB=-5.007e+00	GT:AD:DP:GQ:PL	0/1:116,43:160:69:69,0,275
chrXIV	7209	.	C	G	192.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;DP=184;Dels=0.00;FS=1.905;HaplotypeScore=59.8882;MLEAC=1;MLEAF=0.500;MQ=14.81;MQ0=55;MQRankSum=0.974;QD=1.04;ReadPosRankSum=-2.725;SB=-7.701e+01	GT:AD:DP:GQ:PL	0/1:136,45:184:99:222,0,201
chrXIV	7298	.	C	T	163.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.855;DP=338;Dels=0.00;FS=264.552;HaplotypeScore=95.2720;MLEAC=1;MLEAF=0.500;MQ=19.31;MQ0=17;MQRankSum=1.713;QD=0.48;ReadPosRankSum=2.970;SB=-2.881e+00	GT:AD:DP:GQ:PL	0/1:245,93:338:99:193,0,3095
chrXIV	7299	.	A	G	1385.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.724;DP=337;Dels=0.00;FS=63.305;HaplotypeScore=94.4833;MLEAC=1;MLEAF=0.500;MQ=19.28;MQ0=18;MQRankSum=1.939;QD=4.11;ReadPosRankSum=-1.347;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:220,117:337:99:1415,0,2003
chrXIV	7370	.	T	C	278.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;DP=225;Dels=0.00;FS=0.000;HaplotypeScore=28.7931;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=59;MQRankSum=3.165;QD=1.24;ReadPosRankSum=2.941;SB=-1.450e+02	GT:AD:DP:GQ:PL	0/1:182,38:225:99:308,0,1351
chrXIV	7417	.	T	C	1233.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=152;Dels=0.00;FS=63.985;HaplotypeScore=4.6606;MLEAC=1;MLEAF=0.500;MQ=26.86;MQ0=16;MQRankSum=-0.050;QD=8.11;ReadPosRankSum=1.164;SB=-3.310e+02	GT:AD:DP:GQ:PL	0/1:78,74:152:99:1263,0,721
chrXIV	7722	.	A	G	484	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.20;MQ0=3;MQRankSum=1.625;QD=13.83;ReadPosRankSum=1.625;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:1,33:35:63:517,63,0
chrXIV	7753	.	C	T	491	filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.98;MQ0=4;QD=10.91;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:3,42:45:63:524,63,0
chrXIV	8815	.	A	C	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.58;MQ0=0;MQRankSum=-1.302;QD=0.87;ReadPosRankSum=1.519;SB=-1.774e+00	GT:AD:DP:GQ:PL	1/1:1,15:16:6:45,6,0
chrXIV	8892	.	G	A	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=40;Dels=0.00;FS=32.345;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.90;MQ0=26;MQRankSum=3.204;QD=0.35;ReadPosRankSum=-2.339;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:26,13:40:6:45,6,0
chrXIV	8986	.	A	G	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.86;MQ0=3;QD=2.72;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:6:53,6,0
chrXIV	9646	.	T	C	1184	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=5;QD=21.53;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1217,138,0
chrXIV	9739	.	A	G	350	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.419;DP=42;Dels=0.00;FS=7.404;HaplotypeScore=3.4698;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=20;MQRankSum=1.576;QD=8.33;ReadPosRankSum=-1.734;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:8,33:42:45:383,45,0
chrXIV	9744	.	A	G	378	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.011;DP=45;Dels=0.00;FS=6.812;HaplotypeScore=4.2585;MLEAC=2;MLEAF=1.00;MQ=18.97;MQ0=21;MQRankSum=1.011;QD=8.40;ReadPosRankSum=-1.589;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:10,35:45:48:411,48,0
chrXIV	9930	.	A	G	592	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=24.08;MQ0=19;MQRankSum=0.762;QD=8.58;ReadPosRankSum=1.663;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:1,68:69:69:625,69,0
chrXIV	10172	.	G	A	395	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=26.16;MQ0=21;QD=9.40;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:48:428,48,0
chrXIV	10233	.	C	T	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.07;MQ0=2;QD=1.73;SB=-1.706e+00	GT:AD:DP:GQ:PL	1/1:0,12:12:6:52,6,0
chrXIV	10272	.	G	A	283	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.34;MQ0=2;QD=15.72;SB=-8.563e-03	GT:AD:DP:GQ:PL	1/1:0,18:18:36:316,36,0
chrXIV	10429	.	T	C	313	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=8;QD=12.04;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:39:346,39,0
chrXIV	10441	.	A	G	351	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=8;QD=12.10;SB=-1.290e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:45:384,45,0
chrXIV	10478	.	A	C	284	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=10;QD=8.61;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:36:317,36,0
chrXIV	10567	.	A	G	610	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=45;Dels=0.00;FS=3.493;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.07;MQ0=6;MQRankSum=0.456;QD=13.56;ReadPosRankSum=1.550;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,43:45:72:643,72,0
chrXIV	10574	.	A	C	596	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.70;MQ0=6;QD=13.86;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:629,72,0
chrXIV	10683	.	T	C	622	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.27;MQ0=4;QD=15.17;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,41:41:75:655,75,0
chrXIV	10693	.	G	A	562	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.26;MQ0=4;QD=14.05;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,39:40:66:595,66,0
chrXIV	10809	.	A	G	698	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.78;MQ0=1;QD=18.86;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:731,81,0
chrXIV	10813	.	T	G	665	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=1;QD=18.47;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:698,78,0
chrXIV	10829	.	G	A	612	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.41;MQ0=4;QD=17.00;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:645,72,0
chrXIV	10855	.	T	G	240	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=8;QD=8.57;SB=-1.129e+02	GT:AD:DP:GQ:PL	1/1:0,26:28:30:273,30,0
chrXIV	10888	.	A	G	71.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;DP=18;Dels=0.00;FS=7.404;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.62;MQ0=7;MQRankSum=0.474;QD=3.97;ReadPosRankSum=-1.739;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:1,17:18:12:104,12,0
chrXIV	10986	.	G	T	829	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=32.75;MQ0=3;QD=14.29;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:96:862,96,0
chrXIV	11193	.	G	A	239	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.73;MQ0=11;QD=8.54;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:30:272,30,0
chrXIV	11263	.	C	T	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.46;MQ0=18;QD=0.78;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,24:24:6:50,6,0
chrXIV	11354	.	T	C	171.03	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.81;MQ0=5;QD=4.75;SB=-1.510e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:24:204,24,0
chrXIV	11443	.	G	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.23;MQ0=2;QD=22.21;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1388,153,0
chrXIV	11914	.	A	G	96.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=14.55;MQ0=28;MQRankSum=0.751;QD=2.60;ReadPosRankSum=0.751;SB=-7.630e+01	GT:AD:DP:GQ:PL	1/1:1,36:37:15:129,15,0
chrXIV	12174	.	T	C	205.01	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=14.12;MQ0=21;QD=3.87;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:1,52:53:27:238,27,0
chrXIV	12185	.	C	T	179.03	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.64;MQ0=23;QD=3.38;SB=-3.661e-02	GT:AD:DP:GQ:PL	1/1:0,53:53:24:212,24,0
chrXIV	12487	.	A	G	122.13	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.35;MQ0=26;QD=3.70;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:18:155,18,0
chrXIV	12563	.	T	G	332	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.109;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=18;MQRankSum=-2.367;QD=7.06;ReadPosRankSum=2.195;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,45:47:42:365,42,0
chrXIV	12847	.	T	C	469	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=23.94;MQ0=13;MQRankSum=1.155;QD=10.91;ReadPosRankSum=1.617;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:57:502,57,0
chrXIV	12906	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=2;QD=17.00;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1189,135,0
chrXIV	12941	.	A	G	1016	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=1;QD=17.52;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1049,117,0
chrXIV	12971	.	A	G	789	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=29.9011;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=1;QD=17.93;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:822,93,0
chrXIV	13011	.	C	T	234	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.44;MQ0=9;QD=9.36;SB=-8.098e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:30:267,30,0
chrXIV	13014	.	C	T	240	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.27;MQ0=10;QD=9.60;SB=-8.198e+01	GT:AD:DP:GQ:PL	1/1:0,24:25:30:273,30,0
chrXIV	13135	.	G	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=3;QD=18.55;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1257,141,0
chrXIV	13209	.	G	T	317	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.57;MQ0=9;QD=11.74;SB=-1.510e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:39:350,39,0
chrXIV	13218	.	A	G	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.003;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.41;MQ0=7;MQRankSum=0.589;QD=1.49;ReadPosRankSum=2.003;SB=-1.639e+00	GT:AD:DP:GQ:PL	1/1:2,16:18:6:58,6,0
chrXIV	13228	.	C	A	104.26	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.91;MQ0=10;QD=4.96;SB=-2.384e-01	GT:AD:DP:GQ:PL	1/1:0,21:21:15:137,15,0
chrXIV	13308	.	A	G	154.06	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=16.43;MQ0=28;QD=3.58;SB=-5.768e-02	GT:AD:DP:GQ:PL	1/1:0,43:43:21:187,21,0
chrXIV	13451	.	G	A	369	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.27;MQ0=25;QD=5.95;SB=-6.790e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:45:402,45,0
chrXIV	13485	.	T	C	179.03	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=16.52;MQ0=24;QD=3.81;SB=-3.987e-02	GT:AD:DP:GQ:PL	1/1:0,46:47:24:212,24,0
chrXIV	13503	.	C	A	49.97	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.80;MQ0=20;QD=1.39;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:0,36:36:9:82,9,0
chrXIV	14055	.	G	A	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.20;MQ0=19;QD=0.86;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:6:51,6,0
chrXIV	14062	.	A	G	48.97	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.33;MQ0=17;QD=2.45;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:9:81,9,0
chrXIV	14621	.	C	T	74.51	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=8.54;MQ0=48;QD=1.22;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:7,52:61:12:107,12,0
chrXIV	14876	.	C	T	116.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.093;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=12.43;MQ0=53;MQRankSum=-2.286;QD=1.15;ReadPosRankSum=-1.086;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,57:101:99:146,0,139
chrXIV	14888	.	T	C	107.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=12.74;MQ0=47;MQRankSum=1.486;QD=1.09;ReadPosRankSum=2.153;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,24:98:99:137,0,187
chrXIV	14969	.	C	G	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.38;MQ0=31;MQRankSum=0.449;QD=0.40;ReadPosRankSum=-1.429;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,18:50:50:50,0,78
chrXIV	15155	.	T	C	60.14	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;DP=86;Dels=0.00;FS=44.978;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=10.50;MQ0=55;MQRankSum=-1.090;QD=0.70;ReadPosRankSum=0.795;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:31,55:86:12:90,0,12
chrXIV	15245	.	A	T	1206	filter	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=18.61;MQ0=36;QD=10.58;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,101:114:99:1239,150,0
chrXIV	15281	.	C	T	112.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DP=155;Dels=0.00;FS=1.929;HaplotypeScore=8.9169;MLEAC=1;MLEAF=0.500;MQ=19.38;MQ0=38;MQRankSum=4.641;QD=0.72;ReadPosRankSum=-5.552;SB=-7.701e+01	GT:AD:DP:GQ:PL	0/1:127,27:155:99:142,0,1395
chrXIV	15350	.	T	C	101.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=13.94;MQ0=21;MQRankSum=1.393;QD=3.07;ReadPosRankSum=1.393;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,30:33:15:134,15,0
chrXIV	15574	.	G	A	172.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=62;Dels=0.00;FS=4.449;HaplotypeScore=4.2701;MLEAC=2;MLEAF=1.00;MQ=16.72;MQ0=22;MQRankSum=-1.733;QD=2.77;ReadPosRankSum=-0.222;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:24:205,24,0
chrXIV	15593	.	T	C	278.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;DP=77;Dels=0.00;FS=115.780;HaplotypeScore=11.1848;MLEAC=1;MLEAF=0.500;MQ=20.12;MQ0=20;MQRankSum=2.477;QD=3.61;ReadPosRankSum=1.145;SB=-3.402e+01	GT:AD:DP:GQ:PL	0/1:34,43:77:46:308,0,46
chrXIV	15695	.	C	T	294.46	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;DP=75;Dels=0.00;FS=83.246;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=5;MQRankSum=2.937;QD=3.93;ReadPosRankSum=-0.351;SB=-7.447e+01	GT:AD:DP:GQ:PL	0/1:16,59:75:1:323,0,1
chrXIV	15696	.	T	C	278.46	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=75;Dels=0.00;FS=83.246;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=21.41;MQ0=5;MQRankSum=2.937;QD=3.71;ReadPosRankSum=-0.039;SB=-7.147e+01	GT:AD:DP:GQ:PL	0/1:16,59:75:1:307,0,1
chrXIV	16112	.	C	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;QD=16.78;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1795,195,0
chrXIV	16124	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=16.87;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1602,183,0
chrXIV	16379	.	A	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.27;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1857,201,0
chrXIV	16445	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=18.66;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1563,174,0
chrXIV	16568	.	A	G	1754	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=19.71;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1787,201,0
chrXIV	17428	.	A	C	1814	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.12;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1847,207,0
chrXIV	17694	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.66;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1541,165,0
chrXIV	17727	.	T	C	1186	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.8682;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.83;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1219,135,0
chrXIV	17835	.	A	G	2148	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.87;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2181,240,0
chrXIV	18046	.	T	C	2262	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.54;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2295,255,0
chrXIV	18355	.	T	C	1918	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.1363;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.27;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,103:105:99:1951,216,0
chrXIV	18574	.	G	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.64;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1462,162,0
chrXIV	18748	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.51;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1241,141,0
chrXIV	18787	.	C	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.20;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1185,129,0
chrXIV	18838	.	C	T	915	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.30;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:948,105,0
chrXIV	19036	.	A	G	1911	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1944,225,0
chrXIV	19321	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=18.84;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1823,201,0
chrXIV	19440	.	A	G	2434	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.131;QD=20.28;ReadPosRankSum=1.703;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:2,118:120:99:2467,279,0
chrXIV	19517	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=17.05;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1380,150,0
chrXIV	19520	.	T	A	1354	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=17.14;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1387,150,0
chrXIV	19703	.	A	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4270;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=15.02;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1505,168,0
chrXIV	19713	.	C	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3564;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=16.58;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,97:99:99:1674,183,0
chrXIV	19742	.	T	C	1554	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=16.89;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1587,177,0
chrXIV	19886	.	A	C	1219	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=18.19;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1252,141,0
chrXIV	19934	.	G	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=18.37;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1503,171,0
chrXIV	19955	.	G	A	1277	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=15.57;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1310,141,0
chrXIV	19960	.	G	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=14.77;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1185,129,0
chrXIV	20018	.	A	G	800	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=12.1091;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=13.11;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:96:833,96,0
chrXIV	20045	.	A	C	750	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=16.30;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:783,87,0
chrXIV	20114	.	A	G	497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;MQRankSum=-0.479;QD=10.14;ReadPosRankSum=1.659;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:60:530,60,0
chrXIV	20228	.	C	T	908	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.46;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:941,105,0
chrXIV	20559	.	C	T	1061	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1898;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.65;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1094,123,0
chrXIV	20711	.	A	G	1727	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=4.184;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-1.322;QD=22.72;ReadPosRankSum=1.687;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1760,192,0
chrXIV	20915	.	G	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.71;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1835,201,0
chrXIV	20936	.	G	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.65;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1618,177,0
chrXIV	21401	.	G	A	1776	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1809,204,0
chrXIV	21518	.	A	G	942	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.44;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:975,111,0
chrXIV	21526	.	C	G	776	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=13.86;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,51:56:93:809,93,0
chrXIV	21612	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.148;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=0.433;QD=22.91;ReadPosRankSum=1.678;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1499,165,0
chrXIV	21635	.	T	G	1497	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.226;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.632;QD=21.39;ReadPosRankSum=1.481;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1530,177,0
chrXIV	21701	.	T	C	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=1.258;QD=21.65;ReadPosRankSum=1.685;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1635,183,0
chrXIV	21836	.	A	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1125,129,0
chrXIV	21949	.	T	C	1047	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;MQRankSum=-0.094;QD=19.04;ReadPosRankSum=1.606;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1080,120,0
chrXIV	21953	.	A	G	1025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=3.345;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=0.128;QD=18.98;ReadPosRankSum=1.668;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1058,120,0
chrXIV	21965	.	A	G	1047	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=20.94;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1080,120,0
chrXIV	22021	.	T	C	980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=3.468;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.404;QD=16.33;ReadPosRankSum=1.501;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1013,114,0
chrXIV	22090	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.60;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1719,189,0
chrXIV	22825	.	A	G	1113	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.24;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1146,129,0
chrXIV	22855	.	A	G	1100	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.97;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1133,132,0
chrXIV	22918	.	G	A	948	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.24;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:981,111,0
chrXIV	23134	.	C	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.72;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1167,135,0
chrXIV	23219	.	T	C	1051	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.11;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1084,120,0
chrXIV	23451	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.81;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1737,189,0
chrXIV	23459	.	G	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=19.40;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1682,183,0
chrXIV	23495	.	G	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=18.30;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1662,189,0
chrXIV	23592	.	C	T	1228	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.98;MQ0=0;QD=18.33;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1261,135,0
chrXIV	23613	.	C	T	1409	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=16.98;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1442,156,0
chrXIV	23884	.	T	C	1922	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.628;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;MQRankSum=1.649;QD=23.16;ReadPosRankSum=1.690;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1955,213,0
chrXIV	23905	.	T	A	1857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.199;HaplotypeScore=4.3027;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=0.811;QD=19.76;ReadPosRankSum=1.695;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1890,219,0
chrXIV	24043	.	C	T	1813	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.75;MQ0=0;QD=14.98;SB=-1.453e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:1846,201,0
chrXIV	24081	.	A	T	2310	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.4356;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=19.91;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2343,258,0
chrXIV	24221	.	T	C	2401	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=23.09;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2434,264,0
chrXIV	24263	.	T	A	1704	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=19.36;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1737,189,0
chrXIV	24285	.	G	A	1198	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=17.11;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1231,135,0
chrXIV	24290	.	C	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.94;MQ0=0;QD=15.13;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1092,120,0
chrXIV	24336	.	C	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.57;MQ0=0;QD=18.16;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1577,171,0
chrXIV	24346	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=17.86;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1694,183,0
chrXIV	24416	.	T	C	3034	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=21.37;SB=-1.625e+03	GT:AD:DP:GQ:PL	1/1:0,140:142:99:3067,339,0
chrXIV	24467	.	C	T	3150	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=20.86;SB=-1.966e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3183,342,0
chrXIV	24473	.	C	T	2796	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=18.64;SB=-1.673e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:2829,312,0
chrXIV	24509	.	T	A	2192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=0.075;QD=19.06;ReadPosRankSum=1.702;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2225,249,0
chrXIV	24575	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.29;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1566,183,0
chrXIV	24616	.	G	T	1265	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=20.74;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1298,144,0
chrXIV	24641	.	G	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.58;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1316,141,0
chrXIV	24809	.	T	C	1848	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=4.214;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.456;QD=19.45;ReadPosRankSum=1.696;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1881,213,0
chrXIV	24857	.	G	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.3140;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=16.75;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:1708,186,0
chrXIV	24910	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.0844;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=20.13;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1684,183,0
chrXIV	25123	.	T	C	989	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.0581;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=14.13;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1022,114,0
chrXIV	25137	.	G	A	652	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.94;MQ0=0;QD=11.24;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:78:685,78,0
chrXIV	25142	.	T	C	642	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.40;MQ0=0;QD=11.26;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:78:675,78,0
chrXIV	25157	.	G	A	600	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=10.71;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:69:633,69,0
chrXIV	25167	.	A	T	573	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=10.81;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:66:606,66,0
chrXIV	25197	.	A	G	540	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=11.49;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:66:573,66,0
chrXIV	25340	.	C	T	1934	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.9414;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=19.94;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1967,216,0
chrXIV	25369	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=15.64;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1378,153,0
chrXIV	25389	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=4.619;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;MQRankSum=-1.443;QD=10.52;ReadPosRankSum=1.691;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:917,105,0
chrXIV	25410	.	A	C	834	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=9.93;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:867,99,0
chrXIV	25427	.	A	G	599	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=45.76;MQ0=0;QD=8.09;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:72:632,72,0
chrXIV	25436	.	C	T	646	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=48.60;MQ0=0;QD=9.23;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:75:679,75,0
chrXIV	25528	.	T	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=20.06;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1477,165,0
chrXIV	25651	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=4.496;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.570;QD=14.24;ReadPosRankSum=1.635;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,107:108:99:1571,177,0
chrXIV	25739	.	G	T	1881	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=19.39;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1914,210,0
chrXIV	25764	.	G	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=5.1312;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=18.07;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1677,180,0
chrXIV	25800	.	C	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=18.38;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1595,171,0
chrXIV	25936	.	C	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.86;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1913,207,0
chrXIV	26041	.	A	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.38;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1706,186,0
chrXIV	26085	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=18.44;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1600,180,0
chrXIV	26102	.	C	T	1479	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=15.73;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1512,168,0
chrXIV	26378	.	T	C	2009	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=20.93;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2042,234,0
chrXIV	26408	.	G	A	2044	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7172;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.98;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2077,228,0
chrXIV	26480	.	C	T	1749	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=20.82;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1782,195,0
chrXIV	26624	.	C	T	2115	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4503;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=23.24;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2148,240,0
chrXIV	26669	.	A	G	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.371;DP=62;Dels=0.00;FS=3.077;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;MQRankSum=-0.339;QD=19.92;ReadPosRankSum=-1.773;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1268,125,0
chrXIV	26675	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.308;DP=53;Dels=0.00;FS=3.070;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;MQRankSum=-1.309;QD=18.57;ReadPosRankSum=1.975;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:2,50:53:99:1017,117,0
chrXIV	26681	.	C	T	731	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=16.61;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:764,87,0
chrXIV	26744	.	G	T	1255.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;DP=97;Dels=0.00;FS=19.696;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=53.70;MQ0=0;MQRankSum=-1.021;QD=12.94;ReadPosRankSum=2.510;SB=-7.890e+02	GT:AD:DP:GQ:PL	0/1:20,77:97:99:1285,0,144
chrXIV	26783	.	G	A	815.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.673;DP=118;Dels=0.00;FS=2.446;HaplotypeScore=4.3128;MLEAC=1;MLEAF=0.500;MQ=52.15;MQ0=0;MQRankSum=-2.642;QD=6.91;ReadPosRankSum=-2.422;SB=-6.270e+02	GT:AD:DP:GQ:PL	0/1:44,73:118:99:845,0,638
chrXIV	26789	.	T	C	1720	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=15.09;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:1753,201,0
chrXIV	26953	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.10;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1313,141,0
chrXIV	27007	.	C	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.53;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1182,129,0
chrXIV	27233	.	C	T	1006	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=18.98;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1039,117,0
chrXIV	27266	.	G	T	1139	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=21.49;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1172,126,0
chrXIV	27283	.	T	C	914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=0.510;QD=17.92;ReadPosRankSum=1.664;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:947,111,0
chrXIV	27309	.	G	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.77;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1084,120,0
chrXIV	27347	.	T	C	765	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=20.68;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:798,90,0
chrXIV	27364	.	C	A	794	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=22.06;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:90:827,90,0
chrXIV	27513	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.15;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1399,159,0
chrXIV	27622	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.30;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1535,174,0
chrXIV	27635	.	T	A	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=-1.444;QD=22.00;ReadPosRankSum=1.684;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1617,171,0
chrXIV	27814	.	A	G	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.626;QD=17.29;ReadPosRankSum=1.572;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1157,129,0
chrXIV	27917	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.47;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1696,183,0
chrXIV	28009	.	C	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=19.58;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1384,150,0
chrXIV	28026	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=20.25;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1390,150,0
chrXIV	28085	.	T	G	1282	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.35;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1315,150,0
chrXIV	28335	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=21.91;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1501,162,0
chrXIV	28353	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=22.14;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1295,141,0
chrXIV	28440	.	C	G	991	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=13.76;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1024,117,0
chrXIV	28602	.	T	A	1662	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.2180;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;MQRankSum=0.885;QD=18.47;ReadPosRankSum=1.694;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1695,183,0
chrXIV	28617	.	T	C	1619	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;QD=17.79;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1652,180,0
chrXIV	28660	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.60;MQ0=0;QD=9.87;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:990,114,0
chrXIV	28675	.	T	A	643	SnpCluster	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.97;MQ0=0;QD=6.70;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:75:676,75,0
chrXIV	28680	.	A	G	636	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;MQRankSum=-1.167;QD=6.91;ReadPosRankSum=1.694;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:72:669,72,0
chrXIV	28682	.	C	A	664	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=29.51;MQ0=0;QD=7.22;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:75:697,75,0
chrXIV	28686	.	T	C	562	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.379;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=29.48;MQ0=0;MQRankSum=0.601;QD=5.73;ReadPosRankSum=1.697;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:66:595,66,0
chrXIV	28703	.	C	A	707	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=38.05;MQ0=0;QD=7.07;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:84:740,84,0
chrXIV	28799	.	G	A	2761	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.91;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2794,324,0
chrXIV	28847	.	A	G	2212	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.80;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2245,255,0
chrXIV	29291	.	C	A	2007	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.82;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2040,222,0
chrXIV	29547	.	A	G	2344	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.37;SB=-1.541e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2377,267,0
chrXIV	29555	.	C	T	2348	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.90;SB=-1.483e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2381,258,0
chrXIV	29633	.	T	C	1747	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.84;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1780,195,0
chrXIV	29975	.	A	G	1067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=66;Dels=0.00;FS=2.846;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.766;QD=16.17;ReadPosRankSum=2.336;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:1100,126,0
chrXIV	29984	.	A	G	885	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=58;Dels=0.00;FS=2.949;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;MQRankSum=-0.066;QD=15.26;ReadPosRankSum=2.362;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:2,54:58:99:918,105,0
chrXIV	30413	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6578;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.02;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1775,192,0
chrXIV	30527	.	A	T	2962	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=8.0816;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.08;SB=-1.659e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2995,321,0
chrXIV	30578	.	G	A	2861	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2894,309,0
chrXIV	30802	.	G	T	2498	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2531,270,0
chrXIV	31190	.	T	C	2970	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;QD=22.85;SB=-1.600e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3003,339,0
chrXIV	31429	.	T	C	1722	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.57;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1755,198,0
chrXIV	31443	.	T	C	1894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.566;QD=18.75;ReadPosRankSum=1.698;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:1927,219,0
chrXIV	31516	.	G	T	2134	SnpCluster	AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=0;QD=11.99;SB=-2.002e+03	GT:AD:DP:GQ:PL	1/1:0,178:178:99:2167,243,0
chrXIV	31519	.	C	T	2266	SnpCluster	AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;QD=13.10;SB=-1.950e+03	GT:AD:DP:GQ:PL	1/1:0,169:173:99:2299,249,0
chrXIV	31526	.	A	G	2215	SnpCluster	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=0;QD=13.59;SB=-1.816e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:2248,252,0
chrXIV	31527	.	C	A	2384	SnpCluster	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.46;MQ0=0;QD=14.63;SB=-1.893e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:2417,264,0
chrXIV	31542	.	A	G	2055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.710;DP=157;Dels=0.01;FS=0.000;HaplotypeScore=547.6979;MLEAC=2;MLEAF=1.00;MQ=29.24;MQ0=0;MQRankSum=0.503;QD=13.09;ReadPosRankSum=1.687;SB=-1.746e+03	GT:AD:DP:GQ:PL	1/1:1,154:156:99:2088,243,0
chrXIV	31657	.	G	A	914	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=18.65;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:947,108,0
chrXIV	31666	.	T	C	777	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=18.07;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:810,90,0
chrXIV	31693	.	T	C	473	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=13.91;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:57:506,57,0
chrXIV	31702	.	A	G	371	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.16;MQ0=0;QD=10.60;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:45:404,45,0
chrXIV	31722	.	A	T	425	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;MQRankSum=-0.829;QD=9.24;ReadPosRankSum=1.657;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:51:458,51,0
chrXIV	31748	.	T	C	697	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=12.45;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:81:730,81,0
chrXIV	31770	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=16.16;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1487,162,0
chrXIV	31774	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.86;MQ0=0;QD=16.21;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1638,171,0
chrXIV	31994	.	C	T	1247	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.32;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1280,141,0
chrXIV	32015	.	A	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.82;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1044,114,0
chrXIV	32112	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.80;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1161,132,0
chrXIV	32285	.	A	G	1772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.163;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.139;QD=20.37;ReadPosRankSum=-0.418;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1805,210,0
chrXIV	32330	.	A	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.6024;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.01;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1611,180,0
chrXIV	33086	.	A	G	779	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=15.58;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:90:812,90,0
chrXIV	33272	.	G	A	1503	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.78;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1536,174,0
chrXIV	33359	.	G	A	1705	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1136;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.36;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1738,186,0
chrXIV	33540	.	A	G	1625	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=22.26;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1658,189,0
chrXIV	33602	.	T	C	1707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.750;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.939;QD=20.57;ReadPosRankSum=1.690;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1740,201,0
chrXIV	33651	.	T	C	1495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.862;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.590;QD=20.48;ReadPosRankSum=1.685;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1528,168,0
chrXIV	33735	.	G	C	1145	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=14.68;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1178,135,0
chrXIV	33946	.	G	C	1709	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.36;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1742,195,0
chrXIV	34054	.	G	A	1037	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.52;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1070,114,0
chrXIV	34134	.	C	T	422	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=12.06;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:51:455,51,0
chrXIV	34193	.	G	A	552	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=12.55;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:63:585,63,0
chrXIV	34497	.	G	A	481	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.91;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:57:514,57,0
chrXIV	34590	.	G	A	1136	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.27;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1169,123,0
chrXIV	34650	.	T	A	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;MQRankSum=-0.297;QD=20.24;ReadPosRankSum=1.633;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1450,156,0
chrXIV	34651	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.99;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1432,159,0
chrXIV	35550	.	A	G	1128	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.49;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1161,129,0
chrXIV	36225	.	T	C	1842	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.17;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1875,213,0
chrXIV	36273	.	A	G	1254	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=17.91;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1287,147,0
chrXIV	36441	.	G	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.37;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1703,189,0
chrXIV	36607	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.48;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1558,180,0
chrXIV	36738	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=12.61;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1155,129,0
chrXIV	36744	.	T	C	1120	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=12.04;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1153,129,0
chrXIV	36849	.	T	A	2114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.347;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.115;QD=22.02;ReadPosRankSum=2.296;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:2,94:96:99:2147,237,0
chrXIV	37063	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=19.00;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1363,153,0
chrXIV	37484	.	G	C	2299	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.54;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,119:124:99:2332,255,0
chrXIV	37492	.	T	A	2341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.587;DP=120;Dels=0.00;FS=3.352;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.015;QD=19.51;ReadPosRankSum=1.703;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2374,264,0
chrXIV	37528	.	A	G	2599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.196;DP=127;Dels=0.00;FS=9.406;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-0.927;QD=20.46;ReadPosRankSum=2.372;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:3,124:127:99:2632,300,0
chrXIV	37676	.	A	G	1057	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1090,126,0
chrXIV	37834	.	C	T	1334	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=15.69;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1367,156,0
chrXIV	37855	.	C	T	1627	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.92;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1660,177,0
chrXIV	37986	.	T	C	1426	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.28;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1459,165,0
chrXIV	38125	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.33;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1436,156,0
chrXIV	38446	.	G	C	1156	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1189,135,0
chrXIV	38764	.	A	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.44;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1838,201,0
chrXIV	38851	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.12;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1680,189,0
chrXIV	39122	.	T	C	1657	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.52;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1690,192,0
chrXIV	39235	.	C	A	2011	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.38;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2044,222,0
chrXIV	39282	.	C	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.70;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1787,192,0
chrXIV	39538	.	A	G	1469	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.40;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1502,171,0
chrXIV	39847	.	G	T	1884	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.91;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1917,207,0
chrXIV	40035	.	T	G	2617	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.8328;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.426;QD=21.45;ReadPosRankSum=1.704;SB=-1.523e+03	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2650,291,0
chrXIV	40397	.	A	G	3124	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.69;SB=-1.229e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3157,357,0
chrXIV	40439	.	G	A	3283.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.27;SB=-1.447e+03	GT:AD:DP:GQ:PL	1/1:0,156:162:99:3283,366,0
chrXIV	40607	.	C	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.57;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1452,159,0
chrXIV	40627	.	G	A	1544	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=88;Dels=0.00;FS=3.062;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.591;QD=17.55;ReadPosRankSum=0.020;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:1,85:88:99:1577,168,0
chrXIV	40663	.	T	C	1794	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.1479;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=17.42;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1827,198,0
chrXIV	40774	.	C	T	2239	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=24.08;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2272,243,0
chrXIV	40852	.	A	C	1615	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1396;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.70;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1648,186,0
chrXIV	40912	.	C	T	1014	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.19;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1047,117,0
chrXIV	40918	.	A	G	999	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=15.61;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1032,117,0
chrXIV	41218	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.14;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1483,159,0
chrXIV	41680	.	C	T	1925	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1958,213,0
chrXIV	42031	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.8314;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.07;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2120,228,0
chrXIV	42185	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.86;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1920,210,0
chrXIV	42341	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.1615;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.20;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1476,159,0
chrXIV	42360	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.68;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1501,171,0
chrXIV	42589	.	A	C	1202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;MQRankSum=0.326;QD=17.42;ReadPosRankSum=1.682;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1235,138,0
chrXIV	42594	.	A	T	1141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-0.317;QD=16.07;ReadPosRankSum=1.683;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1174,126,0
chrXIV	42629	.	C	G	994	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=16.30;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1027,114,0
chrXIV	42682	.	C	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.1224;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.27;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1452,159,0
chrXIV	42770	.	T	C	1653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.962;QD=20.41;ReadPosRankSum=1.561;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1686,192,0
chrXIV	42819	.	A	G	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;MQRankSum=0.803;QD=18.41;ReadPosRankSum=1.690;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1561,180,0
chrXIV	43099	.	A	T	1060	filter	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=20.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1093,114,0
chrXIV	43100	.	T	C	951	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=17.94;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:984,111,0
chrXIV	43141	.	G	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=18.14;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1194,129,0
chrXIV	43155	.	T	C	914	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=15.49;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:947,111,0
chrXIV	43156	.	C	G	929	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=16.02;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:962,111,0
chrXIV	43311	.	A	G	718	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=24.76;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:81:751,81,0
chrXIV	43402	.	C	T	1257	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=24.17;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1290,141,0
chrXIV	43576	.	G	A	1740	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.86;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1773,192,0
chrXIV	43810	.	A	G	1208	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.03;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1241,141,0
chrXIV	43821	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=8.376;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;MQRankSum=-1.040;QD=17.79;ReadPosRankSum=2.380;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1278,144,0
chrXIV	44216	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.6386;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=22.00;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1221,135,0
chrXIV	44256	.	C	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.55;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1476,159,0
chrXIV	44605	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.370;QD=18.81;ReadPosRankSum=1.629;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1293,147,0
chrXIV	44718	.	G	A	1778	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=16.62;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:1811,201,0
chrXIV	44734	.	C	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=17.89;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,101:105:99:1911,207,0
chrXIV	44757	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;DP=111;Dels=0.00;FS=12.966;HaplotypeScore=11.7439;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=-0.610;QD=16.04;ReadPosRankSum=3.343;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:4,104:111:99:1813,204,0
chrXIV	44920	.	A	G	1897	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.56;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1930,222,0
chrXIV	45224	.	T	C	2816	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.29;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:2849,318,0
chrXIV	45374	.	T	C	949	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=16.95;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:982,111,0
chrXIV	45407	.	T	C	801	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=3.499;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.848;QD=16.69;ReadPosRankSum=1.659;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:93:834,93,0
chrXIV	45479	.	G	T	1035	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=14.37;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1068,117,0
chrXIV	45497	.	A	G	999	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=12.81;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1032,117,0
chrXIV	45566	.	A	G	1614	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.77;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1647,186,0
chrXIV	45634	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=15.90;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1496,162,0
chrXIV	46130	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.59;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1433,150,0
chrXIV	46179	.	G	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=18.13;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1175,132,0
chrXIV	46184	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=18.76;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1196,135,0
chrXIV	46217	.	A	G	818	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=3.617;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.753;QD=17.78;ReadPosRankSum=1.657;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:96:851,96,0
chrXIV	46343	.	A	T	1073	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1106,123,0
chrXIV	46554	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.25;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1207,132,0
chrXIV	46706	.	G	C	1500	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.00;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1533,171,0
chrXIV	47216	.	G	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.03;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1829,195,0
chrXIV	47275	.	C	A	1438	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=17.12;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1471,159,0
chrXIV	47277	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=16.52;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1388,156,0
chrXIV	47307	.	C	T	1367	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=17.09;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1400,153,0
chrXIV	50094	.	T	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.3840;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.51;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1347,150,0
chrXIV	50288	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.17;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1720,186,0
chrXIV	50444	.	A	G	2017	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=18.68;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,105:108:99:2050,231,0
chrXIV	50452	.	G	A	2234	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=20.13;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2267,246,0
chrXIV	50576	.	A	G	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=87;Dels=0.00;FS=5.918;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;MQRankSum=-0.071;QD=19.82;ReadPosRankSum=2.918;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:3,83:87:99:1757,204,0
chrXIV	50593	.	G	A	1720	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=20.24;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1753,189,0
chrXIV	50736	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.16;MQ0=0;QD=16.47;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1911,210,0
chrXIV	50744	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=95;Dels=0.00;FS=5.260;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;MQRankSum=-1.364;QD=18.36;ReadPosRankSum=1.695;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,93:95:99:1777,198,0
chrXIV	50927	.	G	A	1358	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2612;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.22;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1391,150,0
chrXIV	51041	.	G	A	1819	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1849;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.67;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1852,201,0
chrXIV	51050	.	C	A	1823	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=19.19;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,92:95:99:1856,201,0
chrXIV	51058	.	C	T	1667	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=18.73;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1700,186,0
chrXIV	51266	.	C	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=22.97;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1641,177,0
chrXIV	51825	.	A	G	1964	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=22.32;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1997,225,0
chrXIV	52243	.	C	T	1349	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.27;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1382,150,0
chrXIV	52659	.	G	T	939	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.77;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:972,108,0
chrXIV	52985	.	C	T	1195	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.55;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1228,135,0
chrXIV	55377	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.89;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1537,168,0
chrXIV	57343	.	C	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.74;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1045,114,0
chrXIV	57579	.	C	T	1723	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.7456;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.27;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1756,195,0
chrXIV	57838	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=73;Dels=0.01;FS=3.017;HaplotypeScore=9.7791;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=0.017;QD=18.89;ReadPosRankSum=1.011;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1412,153,0
chrXIV	57896	.	C	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.3396;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=16.73;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1606,171,0
chrXIV	57930	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=3.174;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=-1.411;QD=18.76;ReadPosRankSum=0.481;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2078,225,0
chrXIV	58009	.	G	T	1614	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.7994;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=17.35;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1647,186,0
chrXIV	58013	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=15.28;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1500,168,0
chrXIV	58106	.	T	C	1541	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.01;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1574,174,0
chrXIV	58117	.	A	G	1352	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=3.259;HaplotypeScore=4.4595;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-1.059;QD=18.78;ReadPosRankSum=1.636;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1385,156,0
chrXIV	58193	.	G	A	1882	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.95;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1915,207,0
chrXIV	58317	.	T	C	2269	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=21.61;SB=-1.385e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2302,255,0
chrXIV	58649	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.71;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1618,177,0
chrXIV	58685	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.74;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:991,114,0
chrXIV	58697	.	C	T	732	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=17.02;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:765,84,0
chrXIV	58742	.	G	C	646	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=13.18;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:78:679,78,0
chrXIV	59702	.	C	T	997	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.6882;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.21;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1030,111,0
chrXIV	59823	.	G	A	3053	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=11.5050;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.35;SB=-1.684e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:3086,345,0
chrXIV	59960	.	G	A	1133	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.79;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1166,123,0
chrXIV	59998	.	G	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.66;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1098,117,0
chrXIV	60029	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.35;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:865,99,0
chrXIV	60034	.	A	T	844	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.18;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:877,96,0
chrXIV	60096	.	A	G	755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=46;Dels=0.00;FS=3.979;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=-0.962;QD=16.41;ReadPosRankSum=1.501;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:87:788,87,0
chrXIV	60098	.	G	C	786	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=17.09;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:93:819,93,0
chrXIV	60302	.	C	T	2602	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=19.71;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2635,294,0
chrXIV	60311	.	G	A	2287	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.72;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2320,255,0
chrXIV	60608	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.67;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1744,198,0
chrXIV	60667	.	C	T	2055	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.3526;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=17.27;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,116:119:99:2088,231,0
chrXIV	60881	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=3.066;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.503;QD=19.13;ReadPosRankSum=2.190;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1487,168,0
chrXIV	61007	.	C	T	1352	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.48;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1385,150,0
chrXIV	61244	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5028;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.41;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1781,201,0
chrXIV	61469	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.59;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1737,189,0
chrXIV	61714	.	G	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2205;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.34;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1368,159,0
chrXIV	61741	.	T	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=15.45;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1223,135,0
chrXIV	61870	.	A	C	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.076;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.178;QD=18.10;ReadPosRankSum=1.253;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:2,64:68:99:1264,144,0
chrXIV	62457	.	G	A	1604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.463;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.6092;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=1.155;QD=17.63;ReadPosRankSum=-0.539;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1637,183,0
chrXIV	62535	.	T	A	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=91;Dels=0.00;FS=2.907;HaplotypeScore=75.9652;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;MQRankSum=-1.665;QD=14.30;ReadPosRankSum=2.396;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1334,153,0
chrXIV	62564	.	G	A	957	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=11.39;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:990,108,0
chrXIV	62649	.	A	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.93;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1327,153,0
chrXIV	62825	.	A	T	1379	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=18.64;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1412,153,0
chrXIV	62842	.	C	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.7511;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=12.42;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1225,138,0
chrXIV	63085	.	T	A	1951	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.21;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1984,216,0
chrXIV	63207	.	T	G	2126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;MQRankSum=0.309;QD=18.98;ReadPosRankSum=1.670;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2159,246,0
chrXIV	63218	.	A	G	2040	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=17.59;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2073,240,0
chrXIV	63313	.	G	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=67.9572;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=20.79;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1613,171,0
chrXIV	64081	.	G	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.31;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1866,207,0
chrXIV	64151	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.9824;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.41;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1377,153,0
chrXIV	64164	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.720;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=-0.593;QD=15.97;ReadPosRankSum=1.685;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1199,135,0
chrXIV	64229	.	T	C	961	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.45;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:994,111,0
chrXIV	64664	.	A	G	1861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=9.719;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.808;QD=23.56;ReadPosRankSum=2.911;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1894,210,0
chrXIV	64678	.	T	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.10;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1046,114,0
chrXIV	64718	.	A	G	590	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.67;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:72:623,72,0
chrXIV	64820	.	C	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.91;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1866,201,0
chrXIV	64948	.	A	T	1248	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.63;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1281,138,0
chrXIV	64966	.	G	A	869	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=18.10;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:902,99,0
chrXIV	65000	.	G	A	695	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=16.55;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:728,81,0
chrXIV	65061	.	T	C	534	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=17.23;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:66:567,66,0
chrXIV	65167	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1836,198,0
chrXIV	65493	.	G	A	1364	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=18.68;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1397,156,0
chrXIV	65527	.	A	T	1494	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.65;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1527,165,0
chrXIV	65630	.	A	C	1946	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.85;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:1979,219,0
chrXIV	65647	.	A	T	2462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=125;Dels=0.00;FS=3.726;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;MQRankSum=-1.455;QD=19.70;ReadPosRankSum=1.649;SB=-1.421e+03	GT:AD:DP:GQ:PL	1/1:1,124:125:99:2495,273,0
chrXIV	66215	.	C	T	1731	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.67;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1764,189,0
chrXIV	66427	.	C	T	1710	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.2311;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=22.80;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1743,195,0
chrXIV	67140	.	C	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.38;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1113,126,0
chrXIV	68040	.	G	C	928	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.74;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:99:961,108,0
chrXIV	68221	.	T	A	856	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.02;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:889,96,0
chrXIV	68234	.	T	A	732	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=17.02;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:765,81,0
chrXIV	68397	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.17;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1145,132,0
chrXIV	68451	.	T	C	1093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=61;Dels=0.00;FS=7.506;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.020;QD=17.92;ReadPosRankSum=2.329;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1126,129,0
chrXIV	68498	.	G	A	1841	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.92;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1874,204,0
chrXIV	69145	.	A	C	748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.644;QD=19.18;ReadPosRankSum=1.644;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:87:781,87,0
chrXIV	69775	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.26;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1350,153,0
chrXIV	69925	.	T	C	1182	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.70;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1215,138,0
chrXIV	70054	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.202;DP=57;Dels=0.02;FS=2.681;HaplotypeScore=7.8274;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.922;QD=20.16;ReadPosRankSum=1.371;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:2,53:56:99:1182,132,0
chrXIV	70114	.	C	T	1834	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.71;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1867,204,0
chrXIV	70291	.	G	A	1819	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.9835;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.37;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1852,204,0
chrXIV	70909	.	A	G	1711	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.90;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1744,198,0
chrXIV	71495	.	T	C	2356	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.01;FS=0.000;HaplotypeScore=5.0877;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=19.80;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2389,261,0
chrXIV	71751	.	G	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.46;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1291,147,0
chrXIV	71784	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.15;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1606,171,0
chrXIV	72005	.	T	A	1583	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1616,174,0
chrXIV	72483	.	G	A	1753	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=23.69;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1786,186,0
chrXIV	72849	.	T	C	1954	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.47;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1987,225,0
chrXIV	73758	.	A	G	2303	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.58;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2336,267,0
chrXIV	74370	.	C	A	2156	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.43;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2189,237,0
chrXIV	74437	.	T	G	1641	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.48;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1674,186,0
chrXIV	74523	.	A	C	1042	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.61;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1075,123,0
chrXIV	74571	.	A	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.84;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1471,159,0
chrXIV	74607	.	T	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.58;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1350,144,0
chrXIV	74669	.	T	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.3004;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.41;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1625,174,0
chrXIV	75636	.	C	T	2806	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.1283;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.00;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2839,306,0
chrXIV	75675	.	G	A	2764	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.9321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.11;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2797,300,0
chrXIV	75987	.	G	A	3463.01	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.99;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,164:165:99:3463,393,0
chrXIV	76856	.	A	T	2027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=7.935;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.924;QD=22.78;ReadPosRankSum=2.367;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:2,87:89:99:2060,231,0
chrXIV	77017	.	A	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3336;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.82;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1614,183,0
chrXIV	77182	.	G	A	2062	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.71;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2095,231,0
chrXIV	77306	.	T	C	1639	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=21.57;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1672,183,0
chrXIV	77530	.	T	C	1238	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.94;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1271,141,0
chrXIV	77543	.	T	C	1330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=79;Dels=0.00;FS=9.322;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=-0.205;QD=16.84;ReadPosRankSum=2.387;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:2,76:79:99:1363,150,0
chrXIV	77773	.	G	C	1267	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.47;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1300,147,0
chrXIV	78583	.	T	C	2073	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.52;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,98:101:99:2106,237,0
chrXIV	80343	.	G	A	1195	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.60;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1228,135,0
chrXIV	80433	.	C	G	1543	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.29;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1576,180,0
chrXIV	81570	.	G	C	959	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.44;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:992,111,0
chrXIV	81740	.	C	T	960	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.43;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:993,108,0
chrXIV	81857	.	A	C	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=78;Dels=0.00;FS=3.302;HaplotypeScore=7.2441;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.112;QD=19.76;ReadPosRankSum=1.687;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1574,180,0
chrXIV	82142	.	C	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.22;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1101,117,0
chrXIV	82505	.	G	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.56;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1409,159,0
chrXIV	82802	.	G	A	2117	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.9240;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.79;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2150,231,0
chrXIV	83130	.	C	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.14;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1641,180,0
chrXIV	83324	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.93;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1408,156,0
chrXIV	83714	.	G	A	1240	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1273,144,0
chrXIV	83946	.	G	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1541,165,0
chrXIV	84148	.	T	C	1983	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2016,222,0
chrXIV	84247	.	A	G	1369	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.789;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.163;QD=20.43;ReadPosRankSum=1.629;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1402,159,0
chrXIV	84464	.	G	C	1587	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.35;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1620,180,0
chrXIV	84727	.	G	A	1698	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=5.1170;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=19.74;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1731,189,0
chrXIV	84728	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=87;Dels=0.00;FS=2.888;HaplotypeScore=4.1276;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;MQRankSum=-1.957;QD=18.75;ReadPosRankSum=2.363;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:2,83:87:99:1664,186,0
chrXIV	84877	.	G	A	1127	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.26;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1160,126,0
chrXIV	85225	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=21.12;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1089,117,0
chrXIV	85237	.	A	G	995	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.43;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1028,117,0
chrXIV	85261	.	G	A	901	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=16.69;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:934,105,0
chrXIV	85300	.	C	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.44;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1413,153,0
chrXIV	85381	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=18.69;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1771,189,0
chrXIV	85405	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.550;QD=18.76;ReadPosRankSum=1.691;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:1665,189,0
chrXIV	85621	.	G	C	897	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.39;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:99:930,105,0
chrXIV	85714	.	G	A	2196	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=15.3320;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=19.61;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2229,243,0
chrXIV	85777	.	T	C	2587	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=10.5550;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.18;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2620,297,0
chrXIV	85934	.	G	A	744	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=16.91;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:777,84,0
chrXIV	85954	.	T	C	715	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=16.63;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:748,84,0
chrXIV	86022	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.6023;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=15.96;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1390,156,0
chrXIV	86042	.	G	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=15.61;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1282,138,0
chrXIV	86138	.	T	C	903	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=80;Dels=0.01;FS=11.251;HaplotypeScore=12.5951;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-0.390;QD=11.29;ReadPosRankSum=2.388;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:936,108,0
chrXIV	86180	.	T	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=14.29;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:77:99:1133,129,0
chrXIV	86183	.	T	A	1025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;MQRankSum=-1.020;QD=14.04;ReadPosRankSum=1.685;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1058,120,0
chrXIV	86400	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.953;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=1.521;QD=20.15;ReadPosRankSum=1.690;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1685,192,0
chrXIV	86724	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.66;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1293,150,0
chrXIV	86793	.	T	C	1371	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.04;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1404,162,0
chrXIV	86805	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=-1.140;QD=18.42;ReadPosRankSum=1.368;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1433,156,0
chrXIV	87876	.	A	C	2217	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=19.45;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2250,255,0
chrXIV	88013	.	G	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.88;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1520,171,0
chrXIV	88950	.	C	T	1321	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=24.02;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1354,147,0
chrXIV	88957	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.79;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1239,141,0
chrXIV	88974	.	T	C	1187	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.5962;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=20.47;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1220,138,0
chrXIV	89010	.	A	T	1218	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=19.97;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1251,135,0
chrXIV	89040	.	G	A	1433	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=21.07;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1466,162,0
chrXIV	89169	.	A	G	1459	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.336;QD=20.55;ReadPosRankSum=1.683;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1492,171,0
chrXIV	89494	.	A	G	1805	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=23.14;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1838,204,0
chrXIV	89776	.	C	T	3141	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.9916;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=23.44;SB=-1.661e+03	GT:AD:DP:GQ:PL	1/1:0,132:134:99:3174,345,0
chrXIV	89837	.	C	T	2144	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4565;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=18.48;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2177,237,0
chrXIV	89847	.	G	T	1975	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=17.95;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2008,219,0
chrXIV	89919	.	A	G	1967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.737;QD=22.61;ReadPosRankSum=1.692;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2000,219,0
chrXIV	90031	.	G	A	2058	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.13;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2091,228,0
chrXIV	90251	.	T	G	1446	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.54;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1479,168,0
chrXIV	90414	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.346;QD=21.11;ReadPosRankSum=1.683;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1532,168,0
chrXIV	90677	.	A	G	1914	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.58;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1947,219,0
chrXIV	90956	.	C	T	2105	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.16;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2138,234,0
chrXIV	91169	.	G	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.76;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1883,201,0
chrXIV	91235	.	A	G	1915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=0.042;QD=23.35;ReadPosRankSum=-0.760;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1948,213,0
chrXIV	91525	.	T	C	2527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.286;DP=132;Dels=0.00;FS=14.240;HaplotypeScore=9.3839;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.670;QD=19.14;ReadPosRankSum=3.352;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:4,128:132:99:2560,285,0
chrXIV	91989	.	T	C	1034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.979;QD=22.48;ReadPosRankSum=1.657;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1067,120,0
chrXIV	92329	.	C	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.02;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1486,162,0
chrXIV	92407	.	A	G	958	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.96;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:991,108,0
chrXIV	92476	.	T	C	896	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.29;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:929,105,0
chrXIV	92908	.	A	T	972	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.36;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1005,111,0
chrXIV	93151	.	C	T	1857	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1890,204,0
chrXIV	93328	.	A	G	2358	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.89;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2391,273,0
chrXIV	93481	.	T	C	2544	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.02;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2577,297,0
chrXIV	93790	.	T	C	2406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=3.743;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.149;QD=20.74;ReadPosRankSum=1.613;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2439,279,0
chrXIV	93974	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.77;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1513,165,0
chrXIV	94896	.	A	C	765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;MQRankSum=-0.621;QD=14.43;ReadPosRankSum=1.536;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:90:798,90,0
chrXIV	95089	.	T	C	1465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.5321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.370;QD=21.87;ReadPosRankSum=1.681;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1498,165,0
chrXIV	95190	.	G	A	949	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.19;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:982,108,0
chrXIV	95393	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5034;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.169;QD=22.12;ReadPosRankSum=1.680;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1803,204,0
chrXIV	95510	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7924;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.45;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1515,165,0
chrXIV	95692	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.31;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1618,174,0
chrXIV	96083	.	C	T	2268	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.46;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2301,249,0
chrXIV	96132	.	T	C	4044.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.413;DP=186;Dels=0.00;FS=9.174;HaplotypeScore=11.3198;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=1.826;QD=21.74;ReadPosRankSum=3.413;SB=-2.297e+03	GT:AD:DP:GQ:PL	1/1:4,182:186:99:4044,465,0
chrXIV	96181	.	C	A	3553.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.01;FS=0.000;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=22.07;SB=-2.030e+03	GT:AD:DP:GQ:PL	1/1:0,159:159:99:3553,387,0
chrXIV	96228	.	C	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=19.7336;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=22.00;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1903,207,0
chrXIV	96324	.	G	A	1238	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.65;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1271,144,0
chrXIV	96482	.	T	C	2400	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=120;Dels=0.00;FS=4.234;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=6;MQRankSum=1.702;QD=20.00;ReadPosRankSum=1.580;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2433,270,0
chrXIV	98305	.	T	C	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.056;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=7.47;MQ0=16;MQRankSum=0.839;QD=0.34;ReadPosRankSum=-1.174;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:22,13:35:6:43,6,0
chrXIV	98320	.	C	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=7.84;MQ0=16;QD=0.27;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,44:45:6:43,6,0
chrXIV	100931	.	G	A	127.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;DP=56;Dels=0.00;FS=37.410;HaplotypeScore=2.5787;MLEAC=1;MLEAF=0.500;MQ=15.02;MQ0=29;MQRankSum=2.147;QD=2.27;ReadPosRankSum=2.887;SB=-1.180e-02	GT:AD:DP:GQ:PL	0/1:38,18:56:26:157,0,26
chrXIV	100944	.	T	G	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430;DP=51;Dels=0.00;FS=20.836;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=18.37;MQ0=24;MQRankSum=-0.025;QD=0.35;ReadPosRankSum=-1.258;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:20,31:51:48:48,0,151
chrXIV	100973	.	T	C	217	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.780;DP=51;Dels=0.00;FS=10.647;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.37;MQ0=25;MQRankSum=2.165;QD=4.25;ReadPosRankSum=2.261;SB=-7.402e+01	GT:AD:DP:GQ:PL	1/1:15,36:51:30:250,30,0
chrXIV	101054	.	T	C	563	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=24.23;MQ0=5;QD=15.64;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,34:36:69:596,69,0
chrXIV	101238	.	A	G	611	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.621;DP=52;Dels=0.00;FS=4.488;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=9;MQRankSum=3.340;QD=11.75;ReadPosRankSum=0.777;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:6,45:52:78:644,78,0
chrXIV	101393	.	G	A	105.26	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=3;QD=8.77;SB=-2.384e-01	GT:AD:DP:GQ:PL	1/1:0,12:12:15:138,15,0
chrXIV	101453	.	T	C	50.97	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=1;QD=7.28;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,7:7:9:83,9,0
chrXIV	102628	.	C	A	2142	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=21.00;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2175,237,0
chrXIV	102646	.	G	A	2361	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.91;MQ0=0;QD=21.08;SB=-1.442e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2394,255,0
chrXIV	102681	.	C	T	2163	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.27;MQ0=0;QD=20.60;SB=-1.337e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2196,237,0
chrXIV	102817	.	T	A	1105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;DP=59;Dels=0.00;FS=7.561;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;MQRankSum=-1.403;QD=18.73;ReadPosRankSum=2.367;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1138,126,0
chrXIV	102825	.	A	G	1252	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=18.97;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1285,147,0
chrXIV	102872	.	T	C	2223	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=20.39;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2256,246,0
chrXIV	102906	.	A	G	3077	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.7791;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=21.82;SB=-1.605e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3110,342,0
chrXIV	103108	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=21.50;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1237,138,0
chrXIV	103662	.	A	T	1888	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.07;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1921,213,0
chrXIV	103902	.	T	G	1028	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=17.13;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1061,123,0
chrXIV	104034	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=16.52;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1371,162,0
chrXIV	104153	.	T	C	1596	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.17;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1629,180,0
chrXIV	104189	.	A	G	1686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.222;QD=21.34;ReadPosRankSum=1.643;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1719,189,0
chrXIV	104278	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.01;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1258,138,0
chrXIV	104301	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.34;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1390,153,0
chrXIV	104374	.	G	A	1356	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.16;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1389,153,0
chrXIV	104378	.	A	G	1223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=81;Dels=0.00;FS=6.782;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.300;QD=15.10;ReadPosRankSum=2.387;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:2,76:81:99:1256,141,0
chrXIV	104504	.	G	A	1964	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.46;MQ0=0;QD=20.25;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1997,228,0
chrXIV	104516	.	C	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=19.61;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1916,219,0
chrXIV	104554	.	G	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=18.85;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1560,177,0
chrXIV	104770	.	G	A	2586	PASS	AC=2;AF=1.00;AN=2;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=15.77;SB=-1.454e+03	GT:AD:DP:GQ:PL	1/1:0,164:164:99:2619,297,0
chrXIV	104779	.	G	A	2104	SnpCluster	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=0;QD=14.41;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:2137,246,0
chrXIV	104781	.	A	T	1884	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.708;DP=145;Dels=0.00;FS=5.082;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.37;MQ0=0;MQRankSum=-0.323;QD=12.99;ReadPosRankSum=1.660;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:1,144:145:99:1917,219,0
chrXIV	104785	.	C	T	1675	SnpCluster	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=11.71;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,143:143:99:1708,192,0
chrXIV	104803	.	G	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.84;MQ0=0;QD=11.75;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,136:138:99:1654,186,0
chrXIV	104985	.	T	A	3670.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=181;Dels=0.00;FS=16.360;HaplotypeScore=7.6891;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-0.760;QD=20.28;ReadPosRankSum=2.939;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:3,178:181:99:3670,399,0
chrXIV	104993	.	C	T	3027	PASS	AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=17.50;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:0,171:173:99:3060,339,0
chrXIV	105255	.	C	T	1877	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.7093;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.40;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1910,213,0
chrXIV	105379	.	T	C	2012	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2300;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=15.97;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2045,237,0
chrXIV	105689	.	G	C	1932	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=12.0333;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=18.76;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,101:103:99:1965,219,0
chrXIV	105839	.	G	A	2131	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=13.2624;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=19.73;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2164,234,0
chrXIV	105923	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.102;QD=19.18;ReadPosRankSum=1.687;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1510,171,0
chrXIV	106004	.	T	G	1175	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.26;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1208,135,0
chrXIV	106690	.	G	C	1295	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1328,147,0
chrXIV	107084	.	G	A	1611	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.01;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1644,180,0
chrXIV	107444	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.51;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1243,135,0
chrXIV	109033	.	C	T	3130	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=8.8807;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.94;SB=-1.751e+03	GT:AD:DP:GQ:PL	1/1:0,157:157:99:3163,351,0
chrXIV	109533	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.62;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1683,189,0
chrXIV	109881	.	A	G	1992	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.53;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2025,231,0
chrXIV	111323	.	T	C	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=84;Dels=0.00;FS=5.626;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=-1.237;QD=18.18;ReadPosRankSum=1.691;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1560,174,0
chrXIV	111590	.	A	G	1407	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1440,156,0
chrXIV	113726	.	A	G	1823	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.68;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1856,204,0
chrXIV	114927	.	G	T	841	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.28;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:874,96,0
chrXIV	115349	.	C	T	1734	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.95;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1767,195,0
chrXIV	115882	.	G	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.1479;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.80;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1084,117,0
chrXIV	116131	.	T	C	1314	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.25;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1347,153,0
chrXIV	117271	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1357,150,0
chrXIV	117305	.	T	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.22;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1306,147,0
chrXIV	118249	.	G	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4027;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.94;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1269,147,0
chrXIV	119960	.	A	G	1781	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.43;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1814,201,0
chrXIV	121385	.	G	T	2164	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.34;SB=-1.484e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2197,240,0
chrXIV	121394	.	G	A	1938	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.62;SB=-1.331e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1971,216,0
chrXIV	121510	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.7710;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.65;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1684,180,0
chrXIV	121562	.	C	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=16.1467;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.98;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1330,144,0
chrXIV	121736	.	G	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.61;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1317,147,0
chrXIV	121847	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.277;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=0.981;QD=19.64;ReadPosRankSum=1.690;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1663,192,0
chrXIV	121853	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.6895;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=17.77;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1757,186,0
chrXIV	121988	.	T	G	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=1.683;QD=20.47;ReadPosRankSum=0.841;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1466,168,0
chrXIV	122216	.	G	A	3098	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.65;SB=-1.964e+03	GT:AD:DP:GQ:PL	1/1:0,148:150:99:3131,339,0
chrXIV	122217	.	G	A	3052	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=20.21;SB=-1.984e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:3085,336,0
chrXIV	122496	.	G	A	1409	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=17.40;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1442,162,0
chrXIV	122520	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.2211;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=16.42;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1544,174,0
chrXIV	123158	.	G	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.3122;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.64;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2213,249,0
chrXIV	123338	.	C	T	1423	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.7197;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.93;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1456,162,0
chrXIV	123423	.	A	C	1034	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=18.80;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1067,120,0
chrXIV	123426	.	T	C	967	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.91;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1000,114,0
chrXIV	123896	.	A	G	894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.709;QD=20.32;ReadPosRankSum=1.654;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:927,105,0
chrXIV	124154	.	T	C	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.989;DP=65;Dels=0.00;FS=13.328;HaplotypeScore=8.6329;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.505;QD=18.71;ReadPosRankSum=3.317;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:4,61:65:99:1249,141,0
chrXIV	124235	.	C	T	1321	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.31;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1354,144,0
chrXIV	124329	.	G	A	1384	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.97;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1417,159,0
chrXIV	124634	.	C	G	1690	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.4336;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.39;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1723,198,0
chrXIV	124765	.	G	A	3088	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=10.5337;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.59;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3121,339,0
chrXIV	124988	.	T	C	1977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=1.471;QD=21.26;ReadPosRankSum=1.695;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2010,219,0
chrXIV	125337	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=16.23;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1364,153,0
chrXIV	126226	.	G	A	1798	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.20;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1831,198,0
chrXIV	126305	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.7058;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.06;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2111,234,0
chrXIV	126702	.	C	T	3544.01	PASS	AC=2;AF=1.00;AN=2;DP=207;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.12;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,205:207:99:3544,405,0
chrXIV	126707	.	G	C	3723.01	PASS	AC=2;AF=1.00;AN=2;DP=210;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.73;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,203:210:99:3723,429,0
chrXIV	126744	.	G	A	3449.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=20.17;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,171:171:99:3449,378,0
chrXIV	126981	.	T	C	1723	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=2.693;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-1.850;QD=23.28;ReadPosRankSum=2.383;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1756,192,0
chrXIV	127238	.	C	T	1193	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=18.94;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1226,132,0
chrXIV	127240	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.09;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1274,135,0
chrXIV	127270	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=17.61;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1283,147,0
chrXIV	127345	.	A	T	1648	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.27;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1681,183,0
chrXIV	127464	.	A	G	964	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.53;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:997,111,0
chrXIV	128152	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.96;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1588,183,0
chrXIV	128581	.	T	C	1267	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.84;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1300,144,0
chrXIV	128889	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.81;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1380,153,0
chrXIV	128908	.	G	A	1394	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.91;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1427,159,0
chrXIV	129103	.	C	T	2280	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=21.92;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2313,255,0
chrXIV	129277	.	G	A	1069	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.44;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1102,117,0
chrXIV	129503	.	A	G	937	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=19.52;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:970,111,0
chrXIV	129702	.	A	G	923	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=23.67;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,37:39:99:956,111,0
chrXIV	129800	.	T	C	1529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=5.682;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;MQRankSum=-1.217;QD=20.66;ReadPosRankSum=1.685;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1562,177,0
chrXIV	130095	.	T	C	1068	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.74;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1101,126,0
chrXIV	130161	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.434;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.075;QD=20.07;ReadPosRankSum=1.673;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1217,138,0
chrXIV	130662	.	T	A	1023	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.25;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1056,114,0
chrXIV	130803	.	T	C	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.433;QD=21.44;ReadPosRankSum=1.660;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1062,120,0
chrXIV	130851	.	G	A	676	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.79;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:75:709,75,0
chrXIV	130860	.	C	T	683	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.97;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:716,78,0
chrXIV	130982	.	A	G	866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=45;Dels=0.00;FS=2.932;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=2.231;QD=19.24;ReadPosRankSum=2.341;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:899,99,0
chrXIV	131735	.	T	C	685	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=15.93;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:718,81,0
chrXIV	132054	.	A	G	983	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.27;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1016,117,0
chrXIV	132063	.	C	T	1039	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.3968;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.24;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1072,117,0
chrXIV	132263	.	C	T	1212	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.24;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1245,135,0
chrXIV	132374	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.67;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1356,147,0
chrXIV	132489	.	A	G	1654	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.124;QD=19.69;ReadPosRankSum=1.691;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1687,183,0
chrXIV	132564	.	G	A	1229	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.19;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1262,135,0
chrXIV	132587	.	G	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.47;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1171,126,0
chrXIV	132840	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.39;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1111,123,0
chrXIV	132906	.	G	A	1033	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=18.78;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1066,114,0
chrXIV	134481	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=18.60;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1540,174,0
chrXIV	134547	.	G	A	1491	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=18.41;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1524,168,0
chrXIV	134870	.	A	G	1753	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.64;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1786,204,0
chrXIV	134952	.	C	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.71;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1214,132,0
chrXIV	135060	.	A	C	1099	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=1.091;QD=20.35;ReadPosRankSum=1.668;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1132,126,0
chrXIV	135401	.	C	T	829	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.42;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:93:862,93,0
chrXIV	135598	.	T	C	988	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;MQRankSum=1.193;QD=21.96;ReadPosRankSum=1.501;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1021,111,0
chrXIV	135752	.	A	G	1023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=50;Dels=0.00;FS=5.141;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.106;QD=20.46;ReadPosRankSum=1.662;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:1056,120,0
chrXIV	135883	.	C	T	217.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.698;DP=70;Dels=0.04;FS=19.639;HaplotypeScore=165.0404;MLEAC=2;MLEAF=1.00;MQ=41.33;MQ0=0;MQRankSum=1.153;QD=3.10;ReadPosRankSum=3.650;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:7,60:67:27:250,27,0
chrXIV	135928	.	A	G	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=5.215;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;MQRankSum=-0.017;QD=12.50;ReadPosRankSum=1.698;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1321,159,0
chrXIV	135949	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.64;MQ0=0;QD=13.95;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1456,156,0
chrXIV	136113	.	T	C	1697	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.48;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1730,195,0
chrXIV	136345	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.79;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1592,183,0
chrXIV	136375	.	G	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.85;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1518,168,0
chrXIV	136579	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;MQRankSum=-0.728;QD=18.93;ReadPosRankSum=1.682;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1377,153,0
chrXIV	136762	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=23.98;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1232,132,0
chrXIV	136765	.	A	C	1011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=51;Dels=0.00;FS=4.771;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=1.664;QD=19.82;ReadPosRankSum=1.529;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1044,101,0
chrXIV	136945	.	T	C	1161	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=22.76;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1194,129,0
chrXIV	136960	.	C	T	958	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.29;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:991,108,0
chrXIV	137098	.	C	T	1015	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=17.50;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1048,117,0
chrXIV	137110	.	C	A	986	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=18.60;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1019,111,0
chrXIV	137209	.	G	A	799	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=18.16;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:832,90,0
chrXIV	137227	.	T	C	708	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=17.70;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:741,84,0
chrXIV	137285	.	A	G	1061	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=16.08;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1094,123,0
chrXIV	137407	.	C	G	1176	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.67;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1209,138,0
chrXIV	137489	.	C	G	668	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=14.52;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:78:701,78,0
chrXIV	137796	.	T	C	1081	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.28;MQ0=0;QD=24.02;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1114,123,0
chrXIV	137823	.	G	A	957	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;QD=23.34;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:990,108,0
chrXIV	137884	.	G	A	438	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=18.25;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:51:471,51,0
chrXIV	137886	.	C	A	418	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.10;MQ0=0;QD=17.42;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:51:451,51,0
chrXIV	137905	.	C	T	256	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.66;MQ0=0;QD=15.06;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:33:289,33,0
chrXIV	137961	.	A	G	465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;MQRankSum=-1.733;QD=14.53;ReadPosRankSum=1.625;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:1,31:32:54:498,54,0
chrXIV	137974	.	C	T	398	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.72;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:51:431,51,0
chrXIV	137978	.	G	T	449	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.61;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,32:33:51:482,51,0
chrXIV	137983	.	T	A	440	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.22;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:51:473,51,0
chrXIV	137984	.	T	C	461	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.81;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:54:494,54,0
chrXIV	137990	.	G	C	457	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.35;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:54:490,54,0
chrXIV	137992	.	T	A	473	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.78;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:54:506,54,0
chrXIV	137996	.	A	G	450	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=29.7205;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.86;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:54:483,54,0
chrXIV	138013	.	A	G	438	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.59;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:51:471,51,0
chrXIV	138022	.	T	C	360	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=54;Dels=0.00;FS=14.153;HaplotypeScore=46.0367;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.847;QD=6.67;ReadPosRankSum=2.130;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:45:393,45,0
chrXIV	138025	.	T	C	339	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=46.0367;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.65;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:42:372,42,0
chrXIV	138027	.	A	T	357	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=44.0704;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.510;QD=7.00;ReadPosRankSum=2.354;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:42:390,42,0
chrXIV	138040	.	C	T	335	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.98;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:39:368,39,0
chrXIV	138041	.	A	G	314	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.54;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:39:347,39,0
chrXIV	138047	.	C	T	265	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.30;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:33:298,33,0
chrXIV	138052	.	G	A	207.01	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.50;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:27:240,27,0
chrXIV	138067	.	C	A	270	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.81;MQ0=0;QD=5.51;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:33:303,33,0
chrXIV	138082	.	G	A	293	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=6.98;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:36:326,36,0
chrXIV	138090	.	A	G	301	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=0;QD=7.17;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:39:334,39,0
chrXIV	138102	.	A	G	40.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=40;Dels=0.00;FS=3.424;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=0.474;QD=1.02;ReadPosRankSum=1.423;SB=-4.785e+01	GT:AD:DP:GQ:PL	1/1:1,10:40:9:73,9,0
chrXIV	138112	.	A	T	215	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=6.32;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:30:248,30,0
chrXIV	138120	.	G	A	272	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=7.35;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:33:305,33,0
chrXIV	138126	.	C	T	292	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;QD=7.89;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:36:325,36,0
chrXIV	138141	.	A	G	304	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=9.21;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:39:337,39,0
chrXIV	138144	.	C	G	256	SnpCluster	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=8.26;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:1,30:31:33:289,33,0
chrXIV	138147	.	A	G	257	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;MQRankSum=1.704;QD=8.29;ReadPosRankSum=2.286;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:2,28:30:33:290,33,0
chrXIV	138148	.	A	C	257	SnpCluster	AC=2;AF=1.00;AN=2;DP=29;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=8.86;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:33:290,33,0
chrXIV	138155	.	A	G	231	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;QD=8.56;SB=-2.602e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:30:264,30,0
chrXIV	138167	.	G	C	211.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=8.79;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:0,24:24:27:244,27,0
chrXIV	138168	.	C	T	204.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=8.50;SB=-2.381e-02	GT:AD:DP:GQ:PL	1/1:0,24:24:27:237,27,0
chrXIV	138172	.	G	T	177.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=7.08;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,25:25:24:210,24,0
chrXIV	138175	.	A	G	184.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;QD=7.36;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:0,24:25:24:217,24,0
chrXIV	138189	.	G	C	96.26	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=4.81;SB=-2.728e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:15:129,15,0
chrXIV	138190	.	G	A	104.26	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=5.21;SB=-2.728e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:15:137,15,0
chrXIV	138208	.	T	C	50.97	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=3.92;SB=-9.775e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:9:83,9,0
chrXIV	138222	.	A	T	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.80;MQ0=0;MQRankSum=0.751;QD=2.53;ReadPosRankSum=0.751;SB=-4.464e+01	GT:AD:DP:GQ:PL	1/1:1,8:9:6:54,6,0
chrXIV	138230	.	G	A	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=0;QD=3.11;SB=-4.451e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:6:53,6,0
chrXIV	138237	.	T	C	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=3.9309;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=1.98;SB=-7.064e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:6:51,6,0
chrXIV	138357	.	T	C	558	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=22.32;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:63:591,63,0
chrXIV	138418	.	G	T	331	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=15.76;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:42:364,42,0
chrXIV	138435	.	G	A	50.97	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=5.66;SB=-2.885e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:9:83,9,0
chrXIV	138609	.	T	C	726	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;QD=18.15;SB=-6.901e+01	GT:AD:DP:GQ:PL	1/1:1,39:40:96:759,96,0
chrXIV	138615	.	A	G	802	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.16;MQ0=0;QD=20.05;SB=-7.001e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:99:835,105,0
chrXIV	138630	.	A	G	722	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=18.05;SB=-6.901e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:96:755,96,0
chrXIV	138636	.	A	G	517	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=14.36;SB=-7.001e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:72:550,72,0
chrXIV	138665	.	C	T	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=24.15;MQ0=0;QD=1.25;SB=-1.766e+00	GT:AD:DP:GQ:PL	1/1:0,13:15:6:50,6,0
chrXIV	138677	.	G	A	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.75;MQ0=0;QD=0.66;SB=-5.877e+01	GT:AD:DP:GQ:PL	1/1:0,26:27:6:49,6,0
chrXIV	138689	.	C	T	38.97	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.81;MQ0=0;QD=1.26;SB=-8.098e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:9:71,9,0
chrXIV	138693	.	A	G	87.26	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.60;MQ0=0;QD=2.49;SB=-1.373e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:15:120,15,0
chrXIV	138702	.	T	C	165.03	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=0;QD=4.03;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:24:198,24,0
chrXIV	138751	.	G	A	377	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=7.69;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:48:410,48,0
chrXIV	138757	.	A	T	426	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.45;MQ0=0;QD=9.91;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:51:459,51,0
chrXIV	138797	.	T	C	440	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=10.73;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:57:473,57,0
chrXIV	138802	.	G	A	314	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;QD=8.26;SB=-1.200e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:42:347,42,0
chrXIV	138817	.	A	C	285	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=0;QD=8.14;SB=-1.200e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:39:318,39,0
chrXIV	138821	.	A	G	288	SnpCluster	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.84;MQ0=0;QD=8.23;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:39:321,39,0
chrXIV	138825	.	T	C	263	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;QD=8.22;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:36:296,36,0
chrXIV	138826	.	A	G	277	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.52;MQ0=0;QD=8.66;SB=-1.190e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:39:310,39,0
chrXIV	138867	.	G	C	572	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=15.89;SB=-9.401e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:69:605,69,0
chrXIV	138888	.	A	G	793	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=19.82;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:93:826,93,0
chrXIV	138978	.	G	A	602	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=12.81;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:72:635,72,0
chrXIV	138981	.	C	T	523	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.15;MQ0=0;QD=10.90;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:63:556,63,0
chrXIV	138984	.	G	T	465	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=9.49;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:57:498,57,0
chrXIV	139008	.	C	T	422	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=10.05;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:455,54,0
chrXIV	139009	.	A	G	399	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.89;MQ0=0;QD=9.50;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:54:432,54,0
chrXIV	139041	.	G	A	362	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.92;MQ0=0;QD=10.06;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:48:395,48,0
chrXIV	139050	.	G	T	452	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.40;MQ0=0;QD=10.51;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:60:485,60,0
chrXIV	139092	.	G	A	860	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=34.91;MQ0=0;QD=14.33;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:893,102,0
chrXIV	139101	.	A	G	825	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;MQRankSum=0.440;QD=13.98;ReadPosRankSum=1.615;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:858,102,0
chrXIV	139119	.	T	C	845	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=13.20;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:878,102,0
chrXIV	139182	.	C	T	935	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;QD=17.64;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:968,105,0
chrXIV	139206	.	T	C	742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=9.188;HaplotypeScore=4.6272;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;MQRankSum=-0.800;QD=15.46;ReadPosRankSum=2.244;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:87:775,87,0
chrXIV	139218	.	A	G	592	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=45;Dels=0.00;FS=2.675;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;MQRankSum=0.479;QD=13.16;ReadPosRankSum=2.057;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:2,42:45:72:625,72,0
chrXIV	139254	.	T	C	603	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.12;MQ0=0;QD=14.36;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:72:636,72,0
chrXIV	139269	.	C	T	863	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=15.41;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:896,96,0
chrXIV	139332	.	G	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=19.25;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1188,129,0
chrXIV	139383	.	C	T	822	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=19.57;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:855,93,0
chrXIV	139398	.	G	A	698	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.71;MQ0=0;QD=19.39;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:731,78,0
chrXIV	139451	.	G	A	72.51	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=0;QD=3.30;SB=-4.926e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:12:105,12,0
chrXIV	139455	.	A	G	71.51	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.31;MQ0=0;QD=3.58;SB=-4.826e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:12:104,12,0
chrXIV	139476	.	C	T	70.51	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=3.92;SB=-7.055e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:12:103,12,0
chrXIV	139482	.	C	T	81.51	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.80;MQ0=0;QD=4.53;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,18:18:12:114,12,0
chrXIV	139527	.	G	T	626	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.29;MQ0=0;QD=15.27;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:659,75,0
chrXIV	139563	.	C	T	782	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.37;MQ0=0;QD=16.29;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:815,90,0
chrXIV	139569	.	A	T	764	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=16.98;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:797,90,0
chrXIV	139581	.	T	C	661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=51;Dels=0.00;FS=3.055;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.73;MQ0=0;MQRankSum=-1.237;QD=12.96;ReadPosRankSum=2.354;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:2,49:51:81:694,81,0
chrXIV	139614	.	T	C	973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.688;DP=69;Dels=0.00;FS=2.598;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.64;MQ0=0;MQRankSum=-0.597;QD=14.10;ReadPosRankSum=2.897;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:3,65:69:99:1006,114,0
chrXIV	139630	.	A	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=15.41;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1050,120,0
chrXIV	139692	.	A	G	1011	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.512;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=1.402;QD=16.05;ReadPosRankSum=-0.412;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1044,120,0
chrXIV	139695	.	A	G	1016	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=16.13;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1049,123,0
chrXIV	139698	.	C	T	973	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;MQRankSum=0.058;QD=16.22;ReadPosRankSum=-0.751;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1006,111,0
chrXIV	139832	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=18.40;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1284,138,0
chrXIV	139835	.	C	G	1173	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=48.87;MQ0=0;QD=17.77;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1206,132,0
chrXIV	139851	.	G	A	1076	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=15.82;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1109,120,0
chrXIV	139875	.	G	A	762	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=11.55;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:87:795,87,0
chrXIV	139897	.	G	A	851	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.16;MQ0=0;QD=11.99;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:884,102,0
chrXIV	139930	.	C	T	1141	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=16.78;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1174,126,0
chrXIV	139971	.	G	A	1437	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=18.91;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1470,165,0
chrXIV	140025	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=7.132;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;MQRankSum=1.162;QD=18.19;ReadPosRankSum=2.394;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1634,186,0
chrXIV	140034	.	G	A	1755	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=19.08;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1788,189,0
chrXIV	140088	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=19.53;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1791,192,0
chrXIV	140238	.	T	A	1707	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=19.40;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1740,192,0
chrXIV	140538	.	A	T	1372	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.79;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1405,153,0
chrXIV	140811	.	T	C	1273	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.87;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1306,147,0
chrXIV	140943	.	A	G	2422	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.85;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2455,273,0
chrXIV	141630	.	C	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=18.33;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1298,141,0
chrXIV	141786	.	T	A	1827	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.73;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1860,204,0
chrXIV	141816	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.50;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1366,153,0
chrXIV	141890	.	A	G	1190	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.5268;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1223,135,0
chrXIV	141985	.	C	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.92;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1248,138,0
chrXIV	142022	.	C	T	911	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=18.59;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,46:49:99:944,102,0
chrXIV	142629	.	T	G	1915	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.94;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1948,216,0
chrXIV	142664	.	G	A	1658	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.03;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1691,177,0
chrXIV	142998	.	G	A	1437	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.42;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1470,159,0
chrXIV	143955	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=19.93;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1249,141,0
chrXIV	144084	.	A	G	56.51	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.83;MQ0=0;QD=1.18;SB=-1.105e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:12:89,12,0
chrXIV	144250	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=19.97;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1571,168,0
chrXIV	144264	.	C	T	915	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=12.20;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:948,108,0
chrXIV	144427	.	C	T	1497	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=24.95;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1530,165,0
chrXIV	144997	.	T	C	1695	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;QD=18.23;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1728,198,0
chrXIV	145006	.	C	A	1551	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=18.69;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1584,174,0
chrXIV	145227	.	T	C	2646	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.89;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2679,303,0
chrXIV	145293	.	G	T	1934	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=19.73;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1967,216,0
chrXIV	145312	.	C	G	1761	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.57;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1794,207,0
chrXIV	145314	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=19.63;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1800,207,0
chrXIV	145411	.	A	G	739	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.47;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:772,87,0
chrXIV	146052	.	C	T	1769	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.84;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1802,198,0
chrXIV	146766	.	G	A	3340.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.69;SB=-1.882e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3340,363,0
chrXIV	146788	.	G	C	2287	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=16.57;SB=-1.475e+03	GT:AD:DP:GQ:PL	1/1:0,134:138:99:2320,267,0
chrXIV	146794	.	T	G	2065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.5456;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;MQRankSum=0.719;QD=15.88;ReadPosRankSum=1.652;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:1,129:130:99:2098,240,0
chrXIV	147211	.	A	G	1057	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.732;QD=18.54;ReadPosRankSum=1.672;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1090,123,0
chrXIV	148156	.	C	G	2068	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2101,231,0
chrXIV	148331	.	T	C	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.812;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.148;QD=20.48;ReadPosRankSum=1.693;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1856,207,0
chrXIV	148823	.	A	G	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.592;QD=19.36;ReadPosRankSum=1.685;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1466,162,0
chrXIV	149024	.	A	G	1024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.976;QD=17.96;ReadPosRankSum=1.606;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:1,54:57:99:1057,117,0
chrXIV	149054	.	T	C	924	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.43;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:957,111,0
chrXIV	149537	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.67;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1056,120,0
chrXIV	150779	.	G	A	2067	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.09;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2100,231,0
chrXIV	151127	.	C	T	1670	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.12;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1703,189,0
chrXIV	151394	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.78;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1555,165,0
chrXIV	152295	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1380,159,0
chrXIV	153222	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.618;QD=21.35;ReadPosRankSum=1.694;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1976,225,0
chrXIV	153358	.	C	T	2324	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.39;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2357,258,0
chrXIV	156507	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=71;Dels=0.00;FS=6.340;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.617;QD=18.99;ReadPosRankSum=2.380;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1381,159,0
chrXIV	159166	.	A	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4001;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.26;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1155,126,0
chrXIV	159230	.	T	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.29;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1441,162,0
chrXIV	159352	.	T	C	2682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.9179;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=0.346;QD=20.17;ReadPosRankSum=1.705;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:1,129:133:99:2715,306,0
chrXIV	162311	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.162;QD=22.14;ReadPosRankSum=1.678;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1450,162,0
chrXIV	162494	.	C	A	1619	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.16;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1652,177,0
chrXIV	163717	.	C	T	2193	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.50;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2226,243,0
chrXIV	163817	.	G	A	1432	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.37;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1465,168,0
chrXIV	163952	.	G	A	2383	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.4388;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.90;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2416,261,0
chrXIV	164196	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.34;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1798,201,0
chrXIV	164315	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3291;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.38;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1540,168,0
chrXIV	166155	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.12;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1515,165,0
chrXIV	167536	.	C	T	1501	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.14;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1534,171,0
chrXIV	167835	.	C	T	1736	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=21.97;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1769,189,0
chrXIV	167850	.	A	C	1795	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.37;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1828,207,0
chrXIV	167984	.	T	G	948	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=18.23;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:981,114,0
chrXIV	168076	.	G	A	1010	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=12.6034;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=18.70;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1043,117,0
chrXIV	168178	.	T	C	1208	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.58;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1241,138,0
chrXIV	168578	.	A	G	1190	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.543;QD=20.88;ReadPosRankSum=1.669;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1223,138,0
chrXIV	168628	.	T	C	1599	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.99;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1632,180,0
chrXIV	168676	.	G	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.41;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1414,156,0
chrXIV	168712	.	T	C	1034	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.27;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1067,117,0
chrXIV	168853	.	A	G	846	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.485;QD=16.92;ReadPosRankSum=1.594;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:879,102,0
chrXIV	169220	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.56;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1364,147,0
chrXIV	169290	.	A	G	1109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.279;QD=17.89;ReadPosRankSum=1.621;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1142,126,0
chrXIV	169469	.	G	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.87;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1580,174,0
chrXIV	169528	.	T	G	1978	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.04;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:2011,228,0
chrXIV	169784	.	A	C	1463	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.04;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1496,165,0
chrXIV	169998	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.4705;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.74;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1474,156,0
chrXIV	170305	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=74;Dels=0.00;FS=3.259;HaplotypeScore=7.1706;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;MQRankSum=0.481;QD=17.89;ReadPosRankSum=1.684;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,71:74:99:1357,150,0
chrXIV	170401	.	A	G	1691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=80;Dels=0.00;FS=3.736;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.643;QD=21.14;ReadPosRankSum=1.688;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1724,195,0
chrXIV	170493	.	G	A	2442	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.26;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2475,267,0
chrXIV	170509	.	C	T	2323	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.85;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2356,261,0
chrXIV	170790	.	A	G	3032	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.15;SB=-1.503e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3065,336,0
chrXIV	171097	.	C	T	2947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=132;Dels=0.00;FS=3.077;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.575;QD=22.33;ReadPosRankSum=-0.997;SB=-1.678e+03	GT:AD:DP:GQ:PL	1/1:1,131:132:99:2980,333,0
chrXIV	171927	.	A	G	1108	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.87;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1141,129,0
chrXIV	173029	.	C	T	1601	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.07;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1634,177,0
chrXIV	174073	.	T	C	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=3.663;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=1.571;QD=18.87;ReadPosRankSum=1.611;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1656,186,0
chrXIV	174382	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.31;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1887,213,0
chrXIV	174791	.	A	G	1490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=82;Dels=0.00;FS=3.064;HaplotypeScore=9.6150;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;MQRankSum=-0.556;QD=18.17;ReadPosRankSum=2.390;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1523,168,0
chrXIV	174821	.	A	G	1942	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.62;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,96:99:99:1975,216,0
chrXIV	174916	.	A	T	1561	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.010;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=1.276;QD=20.54;ReadPosRankSum=-1.413;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1594,168,0
chrXIV	174935	.	C	T	1377	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=19.67;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1410,153,0
chrXIV	174966	.	C	A	1093	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3427;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=16.07;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1126,126,0
chrXIV	175088	.	T	A	1702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;DP=91;Dels=0.00;FS=8.129;HaplotypeScore=6.0051;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;MQRankSum=-2.396;QD=18.70;ReadPosRankSum=1.990;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1735,195,0
chrXIV	175091	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.2287;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=21.20;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1856,198,0
chrXIV	175109	.	C	T	1928	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=20.51;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1961,216,0
chrXIV	175243	.	C	G	998	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=8.6017;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=16.36;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1031,117,0
chrXIV	175274	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.51;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1496,162,0
chrXIV	175559	.	T	A	1594	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.5720;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=22.77;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1627,183,0
chrXIV	175973	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.29;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1571,177,0
chrXIV	176246	.	C	T	1854	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.89;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1887,204,0
chrXIV	176348	.	G	A	1978	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.74;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2011,225,0
chrXIV	176366	.	G	A	1855	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.4520;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.08;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1888,204,0
chrXIV	176676	.	T	C	1775	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.88;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1808,201,0
chrXIV	176801	.	G	A	1755	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.50;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1788,198,0
chrXIV	177005	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.27;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1748,195,0
chrXIV	177137	.	A	G	1730	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1763,198,0
chrXIV	177269	.	G	A	1940	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.21;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1973,213,0
chrXIV	177299	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.353;DP=86;Dels=0.00;FS=9.287;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-1.466;QD=19.05;ReadPosRankSum=3.353;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:4,82:86:99:1671,189,0
chrXIV	177761	.	G	A	1718	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.61;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1751,189,0
chrXIV	177881	.	T	C	1943	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.70;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1976,228,0
chrXIV	178001	.	G	A	2273	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2306,252,0
chrXIV	178272	.	A	G	2002	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.49;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2035,231,0
chrXIV	178431	.	G	C	1897	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.32;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1930,216,0
chrXIV	178487	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.36;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2006,219,0
chrXIV	178556	.	C	T	2295	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.65;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2328,258,0
chrXIV	179264	.	T	C	1638	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.84;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1671,189,0
chrXIV	179559	.	A	T	2901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=140;Dels=0.00;FS=9.862;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.663;QD=20.72;ReadPosRankSum=2.414;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:2,138:140:99:2934,321,0
chrXIV	179985	.	G	A	2297	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.47;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2330,258,0
chrXIV	180002	.	G	A	2933	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.80;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,140:141:99:2966,321,0
chrXIV	180219	.	G	A	1740	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.75;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1773,192,0
chrXIV	180736	.	C	T	1960	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.30;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1993,216,0
chrXIV	180742	.	C	A	1903	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.24;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1936,207,0
chrXIV	180909	.	G	T	2146	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.35;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2179,237,0
chrXIV	181057	.	A	T	1337	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.111;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.152;QD=16.30;ReadPosRankSum=2.938;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:4,78:82:99:1370,153,0
chrXIV	181382	.	T	C	992	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=18.37;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1025,114,0
chrXIV	181532	.	T	C	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.321;QD=21.72;ReadPosRankSum=2.382;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:2,71:74:99:1640,159,0
chrXIV	181565	.	G	A	1320	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.33;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1353,147,0
chrXIV	181925	.	T	C	1393	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.35;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1426,159,0
chrXIV	182084	.	C	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1542;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.24;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1541,171,0
chrXIV	182327	.	G	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1753;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.08;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1407,162,0
chrXIV	182372	.	G	A	1272	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.52;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1305,141,0
chrXIV	182462	.	G	A	797	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=16.60;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:830,90,0
chrXIV	182621	.	T	G	1078	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1111,123,0
chrXIV	183060	.	T	C	2149	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.62;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2182,243,0
chrXIV	184035	.	C	T	925	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=17.79;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:958,108,0
chrXIV	184065	.	C	T	986	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.60;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1019,114,0
chrXIV	184146	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3227;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=18.71;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1399,153,0
chrXIV	184212	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;MQRankSum=1.176;QD=21.28;ReadPosRankSum=1.670;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1246,141,0
chrXIV	184449	.	G	A	734	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.84;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:767,84,0
chrXIV	184629	.	G	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.54;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1088,123,0
chrXIV	184882	.	T	C	2428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.5107;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.775;QD=23.12;ReadPosRankSum=1.666;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2461,276,0
chrXIV	184944	.	A	G	2678	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.7431;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.733;QD=24.13;ReadPosRankSum=-0.889;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2711,286,0
chrXIV	184992	.	G	A	2385	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=23.61;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2418,261,0
chrXIV	185085	.	T	C	1803	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.7645;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.496;QD=20.49;ReadPosRankSum=1.693;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1836,210,0
chrXIV	185179	.	A	G	1670	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8991;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.88;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1703,189,0
chrXIV	185309	.	A	G	3427.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=155;Dels=0.00;FS=10.189;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=-0.497;QD=22.11;ReadPosRankSum=2.941;SB=-1.548e+03	GT:AD:DP:GQ:PL	1/1:3,151:155:99:3427,387,0
chrXIV	185417	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=23.54;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1516,165,0
chrXIV	185512	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.77;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1399,156,0
chrXIV	185525	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.9055;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.60;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1405,156,0
chrXIV	185626	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.12;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1381,153,0
chrXIV	185701	.	G	A	1605	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.12;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1638,177,0
chrXIV	185846	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=3.815;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.773;QD=20.65;ReadPosRankSum=1.679;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1396,159,0
chrXIV	185849	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.56;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1390,153,0
chrXIV	185896	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=56;Dels=0.00;FS=3.090;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.291;QD=20.64;ReadPosRankSum=1.669;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1189,132,0
chrXIV	186263	.	G	A	1263	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.16;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1296,141,0
chrXIV	186562	.	T	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.55;SB=-1.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1314,144,0
chrXIV	186992	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.04;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1576,174,0
chrXIV	187217	.	A	T	1003	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.88;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1036,111,0
chrXIV	187884	.	A	C	890	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=15.89;SB=-9.801e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:99:923,105,0
chrXIV	189723	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.26;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1480,165,0
chrXIV	191108	.	C	T	576	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=16.00;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:609,66,0
chrXIV	191137	.	A	G	507	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.50;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:60:540,60,0
chrXIV	191184	.	C	A	784	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.63;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:817,87,0
chrXIV	191241	.	A	C	919	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.37;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:952,108,0
chrXIV	191365	.	T	G	1081	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.79;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1114,126,0
chrXIV	191560	.	G	A	974	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.7632;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.88;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1007,117,0
chrXIV	191890	.	G	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.25;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1924,216,0
chrXIV	191917	.	T	C	1897	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.18;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1930,216,0
chrXIV	192641	.	G	T	2324	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.3468;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.94;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2357,252,0
chrXIV	193276	.	G	A	733	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=19.29;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:766,84,0
chrXIV	193417	.	A	G	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=70;Dels=0.00;FS=6.202;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.522;QD=21.50;ReadPosRankSum=2.900;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1538,168,0
chrXIV	193473	.	C	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1504,159,0
chrXIV	193628	.	T	G	950	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.21;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:99:983,111,0
chrXIV	194047	.	A	G	794	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.46;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:93:827,93,0
chrXIV	194260	.	A	G	687	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:78:720,78,0
chrXIV	194299	.	A	G	973	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.17;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1006,114,0
chrXIV	194351	.	G	A	786	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.9968;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.71;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:87:819,87,0
chrXIV	194419	.	T	C	1241	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1274,147,0
chrXIV	194533	.	C	T	1006	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.12;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1039,117,0
chrXIV	194614	.	A	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.32;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1506,168,0
chrXIV	194656	.	G	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.35;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1640,174,0
chrXIV	195073	.	A	G	2297	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.30;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2330,264,0
chrXIV	195206	.	T	C	1105	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.10;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1138,129,0
chrXIV	195358	.	A	C	1445	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.25;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1478,162,0
chrXIV	195463	.	G	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.76;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1614,180,0
chrXIV	195766	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=3.617;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.879;QD=21.26;ReadPosRankSum=1.632;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1521,168,0
chrXIV	196115	.	A	G	1031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7522;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.407;QD=16.11;ReadPosRankSum=1.678;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1064,120,0
chrXIV	197095	.	G	A	739	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.5463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.94;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:87:772,87,0
chrXIV	197710	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.00;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1436,156,0
chrXIV	198249	.	T	C	58.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.524;QD=0.90;ReadPosRankSum=2.334;SB=-8.352e+01	GT:AD:DP:GQ:PL	1/1:2,63:65:12:91,12,0
chrXIV	198384	.	T	G	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=-1.493;QD=19.60;ReadPosRankSum=1.613;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1170,132,0
chrXIV	198392	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=20.21;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1205,132,0
chrXIV	198795	.	T	C	43.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=1.69;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,25:26:9:76,9,0
chrXIV	198796	.	G	C	70.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=2.82;SB=-1.315e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:12:103,12,0
chrXIV	198797	.	G	A	46.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=1.88;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:9:79,9,0
chrXIV	198937	.	G	A	682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.238;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=1.436;QD=19.49;ReadPosRankSum=0.248;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:1,34:35:58:715,58,0
chrXIV	199244	.	T	C	1063	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.62;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1096,120,0
chrXIV	199403	.	A	G	815	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.90;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:96:848,96,0
chrXIV	199569	.	T	C	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.556;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.316;QD=19.54;ReadPosRankSum=0.165;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1635,165,0
chrXIV	199570	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=19.86;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1642,189,0
chrXIV	199635	.	A	G	902	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=17.35;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:935,102,0
chrXIV	199813	.	G	C	906	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=18.87;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:99:939,105,0
chrXIV	199873	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.27;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1371,153,0
chrXIV	200003	.	C	T	912	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.00;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:945,102,0
chrXIV	200248	.	A	C	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-1.452;QD=20.05;ReadPosRankSum=0.778;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1717,195,0
chrXIV	200503	.	C	T	1018	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.58;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1051,114,0
chrXIV	201039	.	T	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.34;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1058,120,0
chrXIV	201078	.	T	G	1077	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.95;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1110,129,0
chrXIV	201183	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.58;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1457,165,0
chrXIV	201465	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=11.7299;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.87;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1722,186,0
chrXIV	201849	.	A	G	1807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=85;Dels=0.00;FS=3.384;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.569;QD=21.26;ReadPosRankSum=1.610;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1840,204,0
chrXIV	201947	.	C	A	1782	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.73;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1815,198,0
chrXIV	201965	.	T	C	1928	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;DP=103;Dels=0.00;FS=19.414;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=-0.284;QD=18.72;ReadPosRankSum=2.912;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:3,100:103:99:1961,225,0
chrXIV	201973	.	C	T	2002	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=16.28;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2035,228,0
chrXIV	202014	.	A	T	3541.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=20.83;SB=-2.089e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:3541,387,0
chrXIV	202313	.	T	C	2085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=4.273;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-1.214;QD=19.49;ReadPosRankSum=1.635;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2118,240,0
chrXIV	202394	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1351;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.55;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1718,186,0
chrXIV	202414	.	T	A	1800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=1.205;QD=19.57;ReadPosRankSum=1.694;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1833,201,0
chrXIV	202510	.	T	C	1851	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.566;QD=18.33;ReadPosRankSum=1.697;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:1,97:101:99:1884,213,0
chrXIV	202811	.	G	A	2149	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.7422;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.28;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2182,237,0
chrXIV	203039	.	T	A	1626	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.83;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1659,180,0
chrXIV	203284	.	G	A	1536	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.07;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1569,171,0
chrXIV	203351	.	C	T	1397	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=17.46;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1430,156,0
chrXIV	203363	.	T	C	1213	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=74;Dels=0.00;FS=6.141;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.125;QD=16.39;ReadPosRankSum=2.904;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:3,70:74:99:1246,141,0
chrXIV	203441	.	T	C	1916	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.38;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1949,222,0
chrXIV	204260	.	G	A	1059	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;QD=19.25;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1092,117,0
chrXIV	204270	.	G	A	1103	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=18.69;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1136,123,0
chrXIV	204288	.	G	A	1199	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=17.90;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1232,135,0
chrXIV	204319	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=12.01;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:898,102,0
chrXIV	204325	.	T	C	913	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=44.34;MQ0=0;QD=12.01;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:946,105,0
chrXIV	204368	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=16.09;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1256,138,0
chrXIV	204375	.	A	G	1106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=5.411;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.51;MQ0=0;MQRankSum=-1.400;QD=15.15;ReadPosRankSum=1.685;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1139,132,0
chrXIV	204395	.	G	A	1206	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=17.23;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1239,132,0
chrXIV	204437	.	T	A	959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=8.122;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;MQRankSum=-0.889;QD=14.10;ReadPosRankSum=2.341;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:992,117,0
chrXIV	204438	.	T	A	1014	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=14.91;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1047,114,0
chrXIV	204668	.	T	C	2831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.9245;MLEAC=2;MLEAF=1.00;MQ=54.24;MQ0=0;MQRankSum=0.893;QD=21.78;ReadPosRankSum=1.705;SB=-1.468e+03	GT:AD:DP:GQ:PL	1/1:1,128:130:99:2864,324,0
chrXIV	204752	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=21.82;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1757,192,0
chrXIV	205138	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3381;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.25;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1390,153,0
chrXIV	205199	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=15.33;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1336,150,0
chrXIV	205208	.	T	A	1432	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=15.91;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1465,159,0
chrXIV	205622	.	G	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.92;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1433,156,0
chrXIV	205867	.	G	A	1263	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=21.41;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1296,141,0
chrXIV	205874	.	C	T	1241	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.68;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1274,138,0
chrXIV	206552	.	T	A	1262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=6.163;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.118;QD=20.35;ReadPosRankSum=1.621;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1295,144,0
chrXIV	206709	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.501;QD=21.18;ReadPosRankSum=1.675;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1304,144,0
chrXIV	206756	.	G	C	773	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=21.47;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:806,90,0
chrXIV	206786	.	G	A	1043	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.18;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1076,114,0
chrXIV	206892	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=60;Dels=0.00;FS=10.150;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.968;QD=21.25;ReadPosRankSum=2.286;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1308,144,0
chrXIV	207129	.	T	C	803	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.07;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:96:836,96,0
chrXIV	207219	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.10;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1219,132,0
chrXIV	207358	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.58;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1222,135,0
chrXIV	207631	.	T	C	1412	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.977;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.688;QD=17.87;ReadPosRankSum=-1.466;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1445,140,0
chrXIV	207991	.	G	A	1326	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.40;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1359,150,0
chrXIV	208195	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.22;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1321,147,0
chrXIV	208275	.	C	G	880	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=13.97;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:913,102,0
chrXIV	208804	.	A	G	835	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.37;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:96:868,96,0
chrXIV	208882	.	C	T	1212	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.90;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1245,135,0
chrXIV	208921	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.09;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:982,108,0
chrXIV	209095	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=1.479;QD=18.49;ReadPosRankSum=1.564;SB=-1.540e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:93:791,93,0
chrXIV	209155	.	G	A	1387	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.22;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1420,147,0
chrXIV	209245	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.51;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1448,159,0
chrXIV	209482	.	A	G	1287	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;MQRankSum=0.787;QD=19.21;ReadPosRankSum=1.680;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1320,150,0
chrXIV	210155	.	T	C	1025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=52;Dels=0.00;FS=2.781;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.595;QD=19.71;ReadPosRankSum=2.355;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:1058,120,0
chrXIV	210240	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.59;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1334,141,0
chrXIV	210433	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5051;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=19.16;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1087,123,0
chrXIV	210438	.	A	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.6050;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=20.24;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1045,114,0
chrXIV	210474	.	G	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.74;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1415,153,0
chrXIV	210544	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.30;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1304,144,0
chrXIV	210617	.	A	G	1449	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.63;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1482,165,0
chrXIV	210763	.	C	T	1060	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=16.56;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1093,123,0
chrXIV	210775	.	G	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.22;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1108,120,0
chrXIV	211051	.	T	C	1411	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6432;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.16;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1444,159,0
chrXIV	211183	.	A	G	1436	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1291;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=1.431;QD=20.23;ReadPosRankSum=1.582;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1469,165,0
chrXIV	211348	.	C	T	1061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.377;QD=23.07;ReadPosRankSum=-0.904;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1094,120,0
chrXIV	211378	.	A	G	881	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.98;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:914,102,0
chrXIV	211824	.	C	T	976	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.77;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1009,114,0
chrXIV	211886	.	A	G	1057	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.57;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1090,126,0
chrXIV	211934	.	A	G	731	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=16.24;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:764,90,0
chrXIV	212140	.	A	C	867	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:900,102,0
chrXIV	212538	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.94;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1394,150,0
chrXIV	213031	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.14;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1258,141,0
chrXIV	213556	.	T	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.13;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1405,153,0
chrXIV	213607	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.98;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1187,132,0
chrXIV	213646	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=18.81;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1143,126,0
chrXIV	213823	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.2657;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=21.51;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1173,129,0
chrXIV	213856	.	C	T	865	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=14.18;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:898,99,0
chrXIV	213861	.	T	A	816	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=12.75;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:96:849,96,0
chrXIV	214019	.	C	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=12.8198;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.53;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1080,120,0
chrXIV	214071	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8449;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=21.21;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1454,159,0
chrXIV	214111	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=16.23;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1250,138,0
chrXIV	214535	.	T	C	1506	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-1.022;QD=19.06;ReadPosRankSum=1.599;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1539,174,0
chrXIV	214622	.	G	A	2587	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.89;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2620,282,0
chrXIV	214696	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.54;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1557,177,0
chrXIV	214732	.	C	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.90;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1588,171,0
chrXIV	214843	.	G	A	1599	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.99;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1632,183,0
chrXIV	214847	.	A	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.96;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1588,177,0
chrXIV	214909	.	A	G	1187	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=4.009;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=0.451;QD=16.26;ReadPosRankSum=1.685;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1220,138,0
chrXIV	214918	.	T	C	1466	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.56;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1499,168,0
chrXIV	214934	.	T	C	1861	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=21.39;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1894,210,0
chrXIV	215120	.	T	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.13;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1085,120,0
chrXIV	215804	.	T	C	1011	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.44;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1044,120,0
chrXIV	215887	.	T	A	1217	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-1.427;QD=17.90;ReadPosRankSum=1.579;SB=-2.120e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1250,138,0
chrXIV	216026	.	T	A	2334	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.3017;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.37;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2367,249,0
chrXIV	216068	.	A	G	887	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.63;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:920,105,0
chrXIV	216626	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.98;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1166,126,0
chrXIV	218831	.	G	T	2839	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.47;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2872,309,0
chrXIV	218903	.	A	G	2045	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=18.94;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2078,228,0
chrXIV	219170	.	T	C	1923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=6.500;HaplotypeScore=4.9154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.661;QD=18.67;ReadPosRankSum=2.330;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:2,101:103:99:1956,216,0
chrXIV	219422	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=17.28;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1433,156,0
chrXIV	220172	.	C	A	459	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=15.83;SB=-1.580e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:54:492,54,0
chrXIV	220272	.	G	A	905	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.26;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:99:938,102,0
chrXIV	220528	.	T	C	409	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.41;MQ0=0;QD=12.03;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:51:442,51,0
chrXIV	220548	.	T	G	289	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=10.32;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:36:322,36,0
chrXIV	220550	.	T	G	302	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.86;MQ0=0;QD=11.19;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:36:335,36,0
chrXIV	220551	.	T	A	307	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=10.96;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:36:340,36,0
chrXIV	220632	.	G	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.40;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1574,177,0
chrXIV	220663	.	A	T	1859	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=4.924;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-1.254;QD=21.37;ReadPosRankSum=1.692;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1892,204,0
chrXIV	220920	.	C	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.06;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1202,138,0
chrXIV	220950	.	C	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=20.51;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1551,174,0
chrXIV	221010	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;QD=16.40;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1443,156,0
chrXIV	221013	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=15.39;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1310,150,0
chrXIV	221022	.	G	C	1291	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=15.19;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1324,147,0
chrXIV	221673	.	T	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=16.32;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1241,141,0
chrXIV	221796	.	C	T	1674	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0394;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.81;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1707,186,0
chrXIV	221922	.	A	G	920	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.40;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:953,108,0
chrXIV	223210	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.14;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1124,123,0
chrXIV	223453	.	T	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.25;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1390,159,0
chrXIV	224654	.	G	A	1038	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=15.97;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1071,117,0
chrXIV	224659	.	G	T	1028	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=14.69;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1061,114,0
chrXIV	224991	.	A	G	1255	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=10.3973;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=17.93;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1288,144,0
chrXIV	225318	.	T	A	1821	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.42;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1854,201,0
chrXIV	225417	.	T	C	1727	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.34;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1760,192,0
chrXIV	225699	.	T	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.56;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1754,198,0
chrXIV	226011	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=16.81;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1445,156,0
chrXIV	226015	.	G	T	1275	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=15.74;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1308,141,0
chrXIV	226114	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.66;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1547,168,0
chrXIV	226418	.	T	C	1378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=1.381;QD=17.44;ReadPosRankSum=0.285;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1411,162,0
chrXIV	226500	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.3943;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=15.87;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1445,162,0
chrXIV	226580	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=3.979;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.472;QD=16.26;ReadPosRankSum=1.646;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1350,153,0
chrXIV	226950	.	A	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.69;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1304,141,0
chrXIV	227377	.	G	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=24.43;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1572,171,0
chrXIV	227455	.	C	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1645,180,0
chrXIV	227572	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.32;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1173,129,0
chrXIV	227933	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.06;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1647,189,0
chrXIV	229790	.	C	T	1958	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.28;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1991,219,0
chrXIV	229818	.	C	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.48;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1572,168,0
chrXIV	229890	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=51.6255;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=19.16;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1202,135,0
chrXIV	230599	.	G	A	1705	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.04;FS=0.000;HaplotypeScore=13.3759;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.58;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1738,192,0
chrXIV	230725	.	T	C	2269	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.63;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,106:110:99:2302,252,0
chrXIV	230742	.	T	C	2034	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=104;Dels=0.04;FS=0.000;HaplotypeScore=47.6414;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;MQRankSum=1.005;QD=19.56;ReadPosRankSum=1.594;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2067,231,0
chrXIV	230962	.	G	T	2418	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=21.59;SB=-1.470e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2451,267,0
chrXIV	231004	.	T	C	2089	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=0.713;QD=20.48;ReadPosRankSum=1.698;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2122,240,0
chrXIV	231034	.	G	A	1777	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.41;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1810,192,0
chrXIV	231326	.	C	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=16.93;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1438,156,0
chrXIV	231344	.	A	T	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.242;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;MQRankSum=1.410;QD=16.16;ReadPosRankSum=1.490;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1423,159,0
chrXIV	231346	.	C	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=16.86;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1500,162,0
chrXIV	231426	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=16.62;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1529,168,0
chrXIV	231454	.	C	A	1418	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.9989;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.66;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1451,159,0
chrXIV	232241	.	G	A	1871	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.69;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1904,207,0
chrXIV	232438	.	C	T	1648	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.97;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1681,180,0
chrXIV	232508	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7051;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.182;QD=20.66;ReadPosRankSum=1.687;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1603,180,0
chrXIV	232914	.	A	G	1469	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.29;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1502,171,0
chrXIV	233132	.	T	C	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=1.304;QD=18.43;ReadPosRankSum=1.693;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1673,186,0
chrXIV	233237	.	G	C	1339	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=17.39;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:77:99:1372,153,0
chrXIV	233293	.	A	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9402;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.62;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1641,177,0
chrXIV	233498	.	T	C	997	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.49;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1030,114,0
chrXIV	233507	.	A	G	990	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.751;QD=16.23;ReadPosRankSum=1.675;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1023,114,0
chrXIV	233560	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=15.79;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1170,129,0
chrXIV	233585	.	C	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=16.18;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1198,138,0
chrXIV	233609	.	A	G	1244	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=72;Dels=0.00;FS=5.022;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;MQRankSum=-1.536;QD=17.28;ReadPosRankSum=3.331;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:4,68:72:99:1277,144,0
chrXIV	234325	.	G	A	2850	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.7508;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=25.00;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2883,312,0
chrXIV	234916	.	T	C	920	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.78;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:953,108,0
chrXIV	235726	.	T	G	904	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.52;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:937,102,0
chrXIV	236320	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.441;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.327;QD=22.27;ReadPosRankSum=1.687;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1748,198,0
chrXIV	236685	.	A	G	2627	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.65;SB=-1.302e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2660,294,0
chrXIV	236810	.	A	G	890	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.25;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:923,105,0
chrXIV	237099	.	T	C	1963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;DP=87;Dels=0.00;FS=2.963;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.212;QD=22.56;ReadPosRankSum=2.337;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1996,225,0
chrXIV	237838	.	T	G	1103	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.35;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1136,126,0
chrXIV	238041	.	A	G	1762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.822;DP=86;Dels=0.00;FS=6.087;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.750;QD=20.49;ReadPosRankSum=2.917;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:3,83:86:99:1795,198,0
chrXIV	238429	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.25;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1896,213,0
chrXIV	238666	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=21.17;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1769,201,0
chrXIV	239929	.	C	A	1210	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=18.62;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1243,138,0
chrXIV	239950	.	A	G	1098	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.370;DP=67;Dels=0.00;FS=3.209;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.595;QD=16.39;ReadPosRankSum=1.681;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1131,129,0
chrXIV	239987	.	T	G	892	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.536;DP=54;Dels=0.00;FS=4.021;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;MQRankSum=0.360;QD=16.52;ReadPosRankSum=-0.752;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:99:925,102,0
chrXIV	240005	.	A	C	667	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.99;MQ0=0;QD=14.50;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:81:700,81,0
chrXIV	240009	.	T	C	633	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=14.39;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:75:666,75,0
chrXIV	240047	.	A	G	899	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=14.50;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:932,108,0
chrXIV	240441	.	G	A	1172	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.11;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1205,138,0
chrXIV	240602	.	T	C	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=5.006;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=-0.137;QD=16.21;ReadPosRankSum=1.641;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1265,144,0
chrXIV	240618	.	G	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=15.97;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1103,123,0
chrXIV	241273	.	C	A	3022	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.80;SB=-1.563e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3055,327,0
chrXIV	241440	.	G	T	2109	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=20.88;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2142,231,0
chrXIV	242111	.	C	T	1780	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=11.5639;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.14;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1813,195,0
chrXIV	242246	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7033;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.88;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1912,222,0
chrXIV	242579	.	G	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=15.86;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1207,129,0
chrXIV	242589	.	T	C	1148	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=16.17;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1181,132,0
chrXIV	242759	.	C	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.61;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1706,183,0
chrXIV	243194	.	G	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.57;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1198,129,0
chrXIV	243291	.	G	A	2232	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.9827;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.10;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2265,246,0
chrXIV	243674	.	C	T	2761	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.01;SB=-1.500e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2794,300,0
chrXIV	244458	.	G	A	2801	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.15;SB=-1.559e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2834,306,0
chrXIV	245307	.	G	A	837	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.2656;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.41;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:870,96,0
chrXIV	245680	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.31;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1483,168,0
chrXIV	246542	.	G	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=23.33;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1316,144,0
chrXIV	246603	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=17.92;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1520,174,0
chrXIV	246634	.	T	A	1367	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=17.75;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1400,153,0
chrXIV	247168	.	G	A	1224	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=20.75;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1257,135,0
chrXIV	247214	.	T	C	1291	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=15.37;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1324,147,0
chrXIV	247216	.	C	A	1294	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=15.05;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1327,150,0
chrXIV	248282	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.73;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1337,150,0
chrXIV	248423	.	G	A	3230.05	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=17.5959;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.97;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,146:147:99:3264,354,0
chrXIV	248556	.	G	A	2396	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.13;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2429,270,0
chrXIV	249509	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=22.23;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1767,189,0
chrXIV	249542	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=21.17;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1790,198,0
chrXIV	249902	.	A	G	2521	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.174;DP=134;Dels=0.00;FS=3.113;HaplotypeScore=6.4885;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.101;QD=18.81;ReadPosRankSum=1.991;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:2,132:134:99:2554,291,0
chrXIV	249918	.	G	A	2700	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.77;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2733,294,0
chrXIV	250008	.	G	A	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DP=93;Dels=0.00;FS=2.209;HaplotypeScore=8.9090;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;MQRankSum=2.359;QD=20.89;ReadPosRankSum=2.207;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:3,90:93:99:1976,213,0
chrXIV	250019	.	C	T	1773	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.4597;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=19.48;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1806,195,0
chrXIV	250342	.	C	T	922	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=15.63;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:955,102,0
chrXIV	250357	.	G	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=17.24;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1309,141,0
chrXIV	250456	.	C	G	2278	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=21.70;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2311,267,0
chrXIV	250502	.	C	T	1938	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.94;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1971,216,0
chrXIV	250504	.	G	T	1943	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.16;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1976,216,0
chrXIV	250567	.	G	A	2221	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.8332;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.82;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2254,246,0
chrXIV	250619	.	G	A	1972	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.05;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2005,219,0
chrXIV	250834	.	T	C	1698	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=18.66;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1731,189,0
chrXIV	250840	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=16.10;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1482,168,0
chrXIV	250896	.	C	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=16.80;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1125,120,0
chrXIV	252203	.	C	G	1852	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=22.86;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1885,210,0
chrXIV	252907	.	T	C	1231	filter	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.1877;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=15;QD=15.01;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:8,73:82:99:1264,144,0
chrXIV	253087	.	T	C	207.01	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=3;QD=17.25;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,12:12:27:240,27,0
chrXIV	253156	.	T	C	502	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.71;MQ0=8;QD=14.76;SB=-1.560e+02	GT:AD:DP:GQ:PL	1/1:5,29:34:60:535,60,0
chrXIV	253543	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.2291;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=2;QD=20.26;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1350,147,0
chrXIV	253852	.	A	T	1598	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;MQRankSum=-1.192;QD=20.49;ReadPosRankSum=1.597;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1631,177,0
chrXIV	254091	.	T	C	987	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.74;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1020,114,0
chrXIV	254094	.	G	A	916	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=19.49;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:949,102,0
chrXIV	254113	.	C	T	755	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=18.41;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:788,87,0
chrXIV	254143	.	C	T	662	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=15.05;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:75:695,75,0
chrXIV	254151	.	T	G	535	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=12.16;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:63:568,63,0
chrXIV	254474	.	C	T	1601	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.53;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1634,180,0
chrXIV	254495	.	T	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=20.05;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1196,129,0
chrXIV	254579	.	C	T	1275	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=22.77;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1308,144,0
chrXIV	254632	.	T	C	1650	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.89;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1683,189,0
chrXIV	255178	.	G	A	1370	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.03;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1403,159,0
chrXIV	255189	.	A	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.79;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1461,165,0
chrXIV	255192	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.95;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1509,162,0
chrXIV	255215	.	G	A	1896	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=19.55;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1929,204,0
chrXIV	255330	.	C	A	3843.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.87;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,160:161:99:3843,417,0
chrXIV	256252	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2263;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=17.05;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1363,150,0
chrXIV	256273	.	G	A	1306	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.93;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1339,147,0
chrXIV	256778	.	C	T	2216	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.4677;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=18.47;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2249,246,0
chrXIV	256787	.	G	C	1901	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.60;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:1934,222,0
chrXIV	256857	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=5.149;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=-0.289;QD=18.45;ReadPosRankSum=1.684;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1380,156,0
chrXIV	256929	.	A	G	1693	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.46;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,83:87:99:1726,195,0
chrXIV	257114	.	C	T	1674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.001;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=1.386;QD=18.40;ReadPosRankSum=1.694;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1707,165,0
chrXIV	257115	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=0.577;QD=17.20;ReadPosRankSum=1.694;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1598,180,0
chrXIV	257376	.	G	C	2201	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.8169;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=17.89;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,119:123:99:2234,252,0
chrXIV	257472	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=19.61;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1347,153,0
chrXIV	257568	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=19.35;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1233,135,0
chrXIV	257643	.	A	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.11;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1139,129,0
chrXIV	257904	.	T	C	980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=48;Dels=0.00;FS=7.551;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.553;QD=20.42;ReadPosRankSum=2.345;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:2,45:48:99:1013,117,0
chrXIV	257986	.	A	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=21.92;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1436,153,0
chrXIV	258010	.	C	T	1352	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=20.48;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1385,150,0
chrXIV	258013	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=20.31;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1414,153,0
chrXIV	258241	.	A	T	632	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=17.56;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:72:665,72,0
chrXIV	258320	.	A	T	876	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-0.168;QD=14.13;ReadPosRankSum=1.676;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:909,105,0
chrXIV	258399	.	G	A	689	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=16.80;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:722,81,0
chrXIV	258474	.	G	A	571	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.42;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:66:604,66,0
chrXIV	258589	.	T	A	521	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=16.81;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:60:554,60,0
chrXIV	258590	.	G	C	497	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=15.53;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:60:530,60,0
chrXIV	258678	.	C	G	870	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=20.23;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:99:903,102,0
chrXIV	258735	.	A	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.65;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1050,120,0
chrXIV	258795	.	A	G	847	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.17;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:880,99,0
chrXIV	258883	.	C	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=18.16;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1159,126,0
chrXIV	258894	.	A	G	1050	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=17.21;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1083,126,0
chrXIV	259059	.	A	G	1489	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.90;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1522,177,0
chrXIV	259283	.	A	G	1162	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.16;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1195,138,0
chrXIV	259493	.	A	T	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.469;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.5559;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;MQRankSum=0.941;QD=18.47;ReadPosRankSum=1.694;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1769,198,0
chrXIV	259503	.	T	G	1495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=89;Dels=0.00;FS=3.434;HaplotypeScore=4.2283;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;MQRankSum=0.282;QD=16.80;ReadPosRankSum=1.692;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,85:89:99:1528,177,0
chrXIV	259519	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=68;Dels=0.00;FS=10.472;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=0.478;QD=16.81;ReadPosRankSum=2.897;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:3,65:68:99:1176,132,0
chrXIV	259572	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=19.82;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1242,132,0
chrXIV	259694	.	A	G	955	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=20.32;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:988,111,0
chrXIV	259989	.	C	T	1189	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.82;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1222,132,0
chrXIV	260057	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=8.5752;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.67;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:70:99:1480,162,0
chrXIV	260099	.	A	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=22.30;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1527,168,0
chrXIV	260108	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=23.64;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1617,174,0
chrXIV	260586	.	G	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.23;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1349,147,0
chrXIV	260605	.	C	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=17.93;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1091,120,0
chrXIV	260618	.	A	G	860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=4.114;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.601;QD=17.55;ReadPosRankSum=1.662;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:893,99,0
chrXIV	261047	.	T	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.68;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1462,162,0
chrXIV	261362	.	C	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=18.81;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1481,162,0
chrXIV	261659	.	G	A	1864	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1897,213,0
chrXIV	261740	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.7336;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=20.82;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1532,168,0
chrXIV	261806	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=16.04;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1140,129,0
chrXIV	261812	.	G	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.66;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1098,120,0
chrXIV	262046	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.59;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1911,216,0
chrXIV	262109	.	G	A	1749	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.82;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1782,195,0
chrXIV	262301	.	G	A	2298	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.7085;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.08;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2331,255,0
chrXIV	262513	.	T	G	1659	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.55;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1692,192,0
chrXIV	263036	.	A	G	1635	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.40;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1668,189,0
chrXIV	263657	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.399;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.247;QD=22.83;ReadPosRankSum=1.633;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1654,186,0
chrXIV	263896	.	A	C	807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.330;QD=18.77;ReadPosRankSum=1.652;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:96:840,96,0
chrXIV	263968	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.83;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1464,162,0
chrXIV	264232	.	A	G	623	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=18.88;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:656,72,0
chrXIV	264468	.	G	T	1498	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;QD=16.28;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1531,171,0
chrXIV	264473	.	C	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=16.34;SB=-1.174e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1585,174,0
chrXIV	264537	.	A	G	2403	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=11.3751;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.22;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,124:125:99:2436,270,0
chrXIV	265328	.	C	T	1415	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=17.91;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1448,156,0
chrXIV	266015	.	C	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.14;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1267,141,0
chrXIV	266760	.	C	T	1854	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.07;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1887,213,0
chrXIV	267267	.	C	T	1045	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.49;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1078,120,0
chrXIV	268398	.	T	G	1250	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=1.051;QD=19.84;ReadPosRankSum=1.675;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:1,60:63:99:1283,147,0
chrXIV	269266	.	C	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=24.01;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1810,201,0
chrXIV	269711	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.483;QD=19.70;ReadPosRankSum=2.343;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1392,153,0
chrXIV	270079	.	C	A	883	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=20.53;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:916,99,0
chrXIV	270094	.	C	T	770	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=16.38;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:803,87,0
chrXIV	270107	.	T	G	711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-1.732;QD=14.51;ReadPosRankSum=1.662;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:81:744,81,0
chrXIV	270129	.	A	T	739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.71;MQ0=0;MQRankSum=-1.597;QD=14.49;ReadPosRankSum=1.664;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:84:772,84,0
chrXIV	270133	.	C	T	636	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.19;MQ0=0;QD=12.98;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:75:669,75,0
chrXIV	270160	.	T	C	625	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=11.36;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:75:658,75,0
chrXIV	270214	.	T	C	436	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=5.01;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:54:469,54,0
chrXIV	270237	.	T	A	408	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=5.59;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:57:441,57,0
chrXIV	270238	.	A	T	432	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=5.92;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:60:465,60,0
chrXIV	270239	.	C	T	457	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.03;MQ0=0;QD=6.18;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:60:490,60,0
chrXIV	270241	.	A	T	529	SnpCluster	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.48;MQ0=0;QD=6.96;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:63:562,63,0
chrXIV	270523	.	T	G	1507	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.9633;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=20.64;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1540,171,0
chrXIV	270998	.	A	C	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=89;Dels=0.00;FS=3.731;HaplotypeScore=4.2759;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-1.162;QD=14.78;ReadPosRankSum=1.691;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,84:89:99:1348,153,0
chrXIV	271001	.	T	C	1420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8532;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=-0.904;QD=15.43;ReadPosRankSum=1.694;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1453,165,0
chrXIV	271098	.	T	G	3006	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.5137;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=20.87;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,144:144:99:3039,348,0
chrXIV	271256	.	G	C	3046	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.37;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3079,351,0
chrXIV	271443	.	T	A	5394.01	PASS	AC=2;AF=1.00;AN=2;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=12.7622;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.38;SB=-2.638e+03	GT:AD:DP:GQ:PL	1/1:0,241:241:99:5394,588,0
chrXIV	271921	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.7986;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=14.47;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1379,150,0
chrXIV	272042	.	A	G	1743	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.00;FS=5.971;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.976;QD=20.03;ReadPosRankSum=1.692;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1776,204,0
chrXIV	272165	.	C	T	2094	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.3477;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.73;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2127,234,0
chrXIV	272328	.	A	G	5089.01	PASS	AC=2;AF=1.00;AN=2;DP=205;Dels=0.00;FS=0.000;HaplotypeScore=4.2274;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.82;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,204:205:99:5089,561,0
chrXIV	272416	.	A	G	2577	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.9864;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.45;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2610,294,0
chrXIV	272546	.	T	A	6047.01	PASS	AC=2;AF=1.00;AN=2;DP=262;Dels=0.00;FS=0.000;HaplotypeScore=15.8243;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=23.08;SB=-2.247e+03	GT:AD:DP:GQ:PL	1/1:0,262:262:99:6047,660,0
chrXIV	272669	.	C	T	2079	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.05;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2112,228,0
chrXIV	272830	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.589;DP=86;Dels=0.00;FS=5.728;HaplotypeScore=14.9849;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.083;QD=19.50;ReadPosRankSum=2.918;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:3,83:86:99:1710,192,0
chrXIV	273091	.	C	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.58;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1206,132,0
chrXIV	273490	.	A	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.29;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1036,114,0
chrXIV	273698	.	A	G	2670	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.71;SB=-1.500e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2703,297,0
chrXIV	273885	.	G	T	2181	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.96;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2214,240,0
chrXIV	274110	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=16.78;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1258,138,0
chrXIV	274653	.	G	A	2298	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=24.19;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2331,246,0
chrXIV	274721	.	G	A	935	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=16.40;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:968,108,0
chrXIV	274731	.	C	T	928	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.51;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:961,105,0
chrXIV	274808	.	T	C	1180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=59;Dels=0.00;FS=3.054;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;MQRankSum=0.775;QD=20.00;ReadPosRankSum=2.367;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1213,135,0
chrXIV	274838	.	G	A	1421	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.59;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1454,159,0
chrXIV	274853	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=18.76;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1365,150,0
chrXIV	274886	.	C	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=18.19;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1379,150,0
chrXIV	275189	.	G	A	1325	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.40;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1358,153,0
chrXIV	275212	.	T	A	1615	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.75;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1648,180,0
chrXIV	275298	.	C	T	2056	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.10;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2089,231,0
chrXIV	275437	.	T	C	791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=3.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;MQRankSum=0.702;QD=21.38;ReadPosRankSum=1.452;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:90:824,90,0
chrXIV	275457	.	G	A	856	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.61;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:889,99,0
chrXIV	275934	.	T	C	2432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.8344;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.802;QD=21.33;ReadPosRankSum=2.363;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:2,112:114:99:2465,279,0
chrXIV	276118	.	A	C	1105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.962;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=1.476;QD=20.09;ReadPosRankSum=1.668;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1138,108,0
chrXIV	276149	.	A	G	1042	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.0143;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.27;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1075,123,0
chrXIV	276550	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.24;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1269,141,0
chrXIV	276588	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.15;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,59:62:99:1282,141,0
chrXIV	276799	.	C	T	2385	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.8086;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=21.11;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2418,267,0
chrXIV	276831	.	A	G	2083	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.07;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2116,237,0
chrXIV	277361	.	G	A	1745	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=6.6145;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.29;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1778,192,0
chrXIV	277707	.	A	T	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.187;QD=20.34;ReadPosRankSum=1.679;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1355,150,0
chrXIV	277752	.	A	G	1411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.692;DP=69;Dels=0.00;FS=18.205;HaplotypeScore=5.9881;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.914;QD=20.45;ReadPosRankSum=3.599;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:5,64:69:99:1444,162,0
chrXIV	277797	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1117;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;MQRankSum=0.303;QD=20.00;ReadPosRankSum=1.689;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1653,186,0
chrXIV	277803	.	G	A	1663	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1665;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.663;QD=20.28;ReadPosRankSum=-1.604;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1696,163,0
chrXIV	278278	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=22.69;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1258,135,0
chrXIV	278286	.	C	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.28;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1246,138,0
chrXIV	278430	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.60;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1346,153,0
chrXIV	278571	.	A	G	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.530;QD=19.10;ReadPosRankSum=1.662;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:969,111,0
chrXIV	278691	.	T	C	915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.979;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.578;QD=20.33;ReadPosRankSum=1.655;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:948,105,0
chrXIV	278757	.	A	G	940	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;QD=17.74;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:973,111,0
chrXIV	278850	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.93;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1184,135,0
chrXIV	279061	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.39;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1017,114,0
chrXIV	279072	.	A	G	1063	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.44;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1096,120,0
chrXIV	279171	.	C	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=20.48;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1487,162,0
chrXIV	279177	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.805;QD=18.27;ReadPosRankSum=1.635;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1330,147,0
chrXIV	279204	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.14;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1201,129,0
chrXIV	279267	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.28;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1325,147,0
chrXIV	279378	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.8562;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.05;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1767,204,0
chrXIV	279444	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.96;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1504,162,0
chrXIV	279537	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9589;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=21.57;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1694,192,0
chrXIV	279645	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=23.13;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2045,234,0
chrXIV	279996	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.04;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1386,150,0
chrXIV	280002	.	T	A	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=0.503;QD=19.65;ReadPosRankSum=1.676;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1251,135,0
chrXIV	280016	.	C	A	1066	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=19.74;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1099,123,0
chrXIV	280112	.	C	T	849	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=18.87;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:882,96,0
chrXIV	280158	.	T	C	746	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=15.54;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:779,84,0
chrXIV	280722	.	C	T	1695	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.46;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1728,189,0
chrXIV	280848	.	A	G	3197	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=23.34;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3230,351,0
chrXIV	280977	.	A	G	1858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.243;DP=87;Dels=0.00;FS=3.166;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.224;QD=21.36;ReadPosRankSum=-1.488;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:1891,194,0
chrXIV	281038	.	G	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.52;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1677,180,0
chrXIV	281100	.	C	T	1970	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.94;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2003,222,0
chrXIV	281196	.	G	A	2932	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=9.8313;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.72;SB=-1.665e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2965,315,0
chrXIV	281259	.	G	A	2553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.795;DP=123;Dels=0.00;FS=3.621;HaplotypeScore=10.2342;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.767;QD=20.76;ReadPosRankSum=-1.704;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:1,121:123:99:2586,259,0
chrXIV	281391	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.37;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1529,168,0
chrXIV	281525	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=17.99;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1814,198,0
chrXIV	281533	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=18.38;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1889,207,0
chrXIV	281634	.	C	T	2131	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.30;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2164,234,0
chrXIV	281655	.	A	G	1865	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.28;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1898,210,0
chrXIV	282032	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=57.99;MQ0=0;QD=20.77;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1965,213,0
chrXIV	282640	.	C	T	1495	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.2867;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=18.92;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1528,165,0
chrXIV	282778	.	T	C	1153	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;MQRankSum=-0.674;QD=16.01;ReadPosRankSum=1.684;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1186,132,0
chrXIV	282787	.	C	T	949	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=14.38;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:982,108,0
chrXIV	282805	.	C	T	998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3126;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;MQRankSum=-0.853;QD=14.90;ReadPosRankSum=1.681;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1031,111,0
chrXIV	282820	.	C	T	769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.017;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=40.68;MQ0=0;MQRankSum=-0.797;QD=12.21;ReadPosRankSum=1.622;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:67:802,67,0
chrXIV	282824	.	A	G	763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;MQRankSum=-1.359;QD=11.74;ReadPosRankSum=1.626;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:90:796,90,0
chrXIV	282868	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=18.94;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1378,153,0
chrXIV	282964	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.09;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1660,192,0
chrXIV	283562	.	A	G	1273	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.282;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.577;QD=19.00;ReadPosRankSum=1.680;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1306,147,0
chrXIV	283828	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.736;QD=21.71;ReadPosRankSum=1.689;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1770,201,0
chrXIV	283835	.	A	G	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=4.505;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.118;QD=20.75;ReadPosRankSum=1.688;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1672,186,0
chrXIV	284646	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.89;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1544,165,0
chrXIV	284715	.	T	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.17;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1425,156,0
chrXIV	284733	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-0.129;QD=17.78;ReadPosRankSum=1.681;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1224,138,0
chrXIV	284847	.	C	T	1730	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.62;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1763,192,0
chrXIV	285069	.	C	T	1241	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.70;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1274,144,0
chrXIV	285306	.	G	A	1141	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1174,132,0
chrXIV	285483	.	C	T	1277	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.26;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1310,147,0
chrXIV	285930	.	A	G	2258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=0.044;QD=19.14;ReadPosRankSum=1.703;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:1,116:118:99:2291,261,0
chrXIV	286055	.	G	A	1650	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.157;QD=21.15;ReadPosRankSum=1.687;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1683,180,0
chrXIV	286099	.	T	C	894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=3.096;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.645;QD=18.62;ReadPosRankSum=2.193;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:927,108,0
chrXIV	286146	.	A	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.31;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1056,120,0
chrXIV	286433	.	T	C	1558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.9756;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.071;QD=21.34;ReadPosRankSum=1.590;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1591,177,0
chrXIV	286619	.	C	T	1799	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.67;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1832,207,0
chrXIV	286831	.	A	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0920;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.15;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1661,186,0
chrXIV	286862	.	C	T	1845	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.97;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1878,210,0
chrXIV	287016	.	C	G	1238	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.63;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1271,144,0
chrXIV	287096	.	A	C	1544	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=3.245;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.456;QD=20.32;ReadPosRankSum=1.687;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1577,183,0
chrXIV	287246	.	G	A	2636	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.97;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2669,297,0
chrXIV	287304	.	T	C	3691.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=17.0491;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.752;QD=23.21;ReadPosRankSum=1.710;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,158:159:99:3691,417,0
chrXIV	287408	.	C	A	1690	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.95;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1723,189,0
chrXIV	287435	.	G	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=18.79;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1367,156,0
chrXIV	287504	.	C	T	2696	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.01;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.09;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,148:148:99:2729,312,0
chrXIV	287606	.	T	C	5409.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=242;Dels=0.00;FS=2.800;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=-1.293;QD=22.35;ReadPosRankSum=2.409;SB=-2.391e+03	GT:AD:DP:GQ:PL	1/1:2,240:242:99:5409,588,0
chrXIV	287633	.	A	G	4257.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.934;DP=200;Dels=0.00;FS=14.716;HaplotypeScore=5.1845;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.409;QD=21.29;ReadPosRankSum=2.722;SB=-1.411e+03	GT:AD:DP:GQ:PL	1/1:3,196:200:99:4257,471,0
chrXIV	287655	.	A	G	3348.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=150;Dels=0.00;FS=4.859;HaplotypeScore=3.5893;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-0.393;QD=22.32;ReadPosRankSum=1.709;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:1,149:150:99:3348,378,0
chrXIV	288102	.	A	G	2145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=106;Dels=0.00;FS=3.979;HaplotypeScore=4.4107;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.478;QD=20.24;ReadPosRankSum=1.336;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2178,240,0
chrXIV	288146	.	A	T	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=79;Dels=0.00;FS=3.480;HaplotypeScore=8.6791;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.799;QD=17.80;ReadPosRankSum=1.688;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1439,159,0
chrXIV	288198	.	A	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.51;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1603,174,0
chrXIV	288447	.	A	G	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.014;QD=19.84;ReadPosRankSum=2.393;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1739,195,0
chrXIV	289129	.	A	G	723	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.21;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:756,84,0
chrXIV	289819	.	G	A	1542	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.03;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:70:99:1575,174,0
chrXIV	289920	.	A	G	1123	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1156,132,0
chrXIV	290022	.	C	T	608	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.00;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:72:641,72,0
chrXIV	290043	.	C	T	226.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DP=45;Dels=0.00;FS=6.950;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=47.45;MQ0=0;MQRankSum=-0.561;QD=5.02;ReadPosRankSum=2.184;SB=-1.570e+02	GT:AD:DP:GQ:PL	0/1:26,18:45:99:256,0,194
chrXIV	290055	.	C	T	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;DP=43;Dels=0.00;FS=8.640;HaplotypeScore=4.5077;MLEAC=1;MLEAF=0.500;MQ=48.79;MQ0=0;MQRankSum=-2.113;QD=1.00;ReadPosRankSum=-3.982;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:33,10:43:73:73,0,344
chrXIV	290461	.	G	A	1387	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.26;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1420,156,0
chrXIV	290667	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.90;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1446,159,0
chrXIV	290886	.	C	T	2106	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.27;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2139,237,0
chrXIV	290985	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.33;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1903,207,0
chrXIV	291360	.	G	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.29;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1230,135,0
chrXIV	291552	.	C	T	981	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=18.51;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1014,111,0
chrXIV	291555	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.37;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:971,105,0
chrXIV	291654	.	T	A	1362	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.28;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1395,159,0
chrXIV	291725	.	C	T	2452	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.54;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2485,270,0
chrXIV	291882	.	C	T	2301	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.12;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2334,255,0
chrXIV	292005	.	A	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.26;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1754,195,0
chrXIV	292036	.	A	G	1684	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.07;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1717,192,0
chrXIV	292265	.	T	C	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.0796;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.299;QD=19.46;ReadPosRankSum=1.678;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1298,147,0
chrXIV	292355	.	G	C	1484	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.05;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1517,174,0
chrXIV	292505	.	C	T	1964	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.58;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1997,219,0
chrXIV	292695	.	G	A	2212	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=94;Dels=0.00;FS=3.153;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.726;QD=23.53;ReadPosRankSum=-0.056;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2245,221,0
chrXIV	292862	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=22.40;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1444,162,0
chrXIV	292881	.	C	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=17.06;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1125,126,0
chrXIV	292884	.	T	G	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=6.435;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.44;MQ0=0;MQRankSum=-0.105;QD=18.52;ReadPosRankSum=1.680;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1255,138,0
chrXIV	293042	.	G	A	3385.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.03;FS=0.000;HaplotypeScore=25.5528;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.84;SB=-1.919e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3385,369,0
chrXIV	293332	.	C	T	1846	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.07;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1879,207,0
chrXIV	293347	.	A	G	1943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-0.382;QD=19.24;ReadPosRankSum=2.401;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:2,98:101:99:1976,219,0
chrXIV	294334	.	G	A	2283	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.14;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2316,255,0
chrXIV	294681	.	A	G	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=2.756;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.317;QD=19.64;ReadPosRankSum=2.383;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:1506,162,0
chrXIV	294859	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.93;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1660,177,0
chrXIV	294928	.	C	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.39;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1690,186,0
chrXIV	294973	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.93;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1434,162,0
chrXIV	295050	.	T	C	1573	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=-1.495;QD=21.55;ReadPosRankSum=1.685;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1606,180,0
chrXIV	295066	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.17;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1375,153,0
chrXIV	295715	.	T	C	1217	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.96;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1250,138,0
chrXIV	295803	.	A	C	1833	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0867;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.82;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1866,210,0
chrXIV	296137	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=83;Dels=0.00;FS=6.743;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;MQRankSum=0.225;QD=16.08;ReadPosRankSum=2.239;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:2,80:83:99:1368,156,0
chrXIV	296142	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=17.05;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1431,162,0
chrXIV	296416	.	T	C	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=6.826;HaplotypeScore=4.0045;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.483;QD=19.32;ReadPosRankSum=2.383;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1463,159,0
chrXIV	296479	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=18.23;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1309,147,0
chrXIV	296824	.	A	G	1898	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.60;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1931,219,0
chrXIV	296860	.	A	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.84;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1492,168,0
chrXIV	296926	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.22;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1494,162,0
chrXIV	296932	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.19;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1434,159,0
chrXIV	297187	.	G	A	2371	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.9225;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.36;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2404,273,0
chrXIV	297253	.	T	C	2083	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.8356;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.26;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,96:98:99:2116,234,0
chrXIV	297310	.	A	G	1751	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=19.03;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1784,201,0
chrXIV	297334	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7287;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=18.87;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1656,189,0
chrXIV	297366	.	C	T	1970	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.31;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2003,222,0
chrXIV	297636	.	C	T	1706	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=20.07;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1739,186,0
chrXIV	297638	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=19.30;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1731,189,0
chrXIV	297710	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=19.25;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1823,195,0
chrXIV	297762	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=52.0064;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=17.14;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1216,135,0
chrXIV	298110	.	C	A	1028	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=19.77;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1061,114,0
chrXIV	299396	.	T	C	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=4.973;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=0.315;QD=20.30;ReadPosRankSum=1.680;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1393,156,0
chrXIV	299444	.	G	A	1039	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.37;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1072,117,0
chrXIV	299483	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=3.882;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.472;QD=22.82;ReadPosRankSum=1.496;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1037,120,0
chrXIV	299515	.	A	G	1534	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.501;QD=20.18;ReadPosRankSum=1.594;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1567,158,0
chrXIV	300185	.	G	A	758	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.49;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:791,90,0
chrXIV	300215	.	T	C	762	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=18.14;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:795,90,0
chrXIV	300432	.	G	A	960	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.00;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:993,114,0
chrXIV	300452	.	T	C	807	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.77;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:96:840,96,0
chrXIV	300720	.	T	C	497	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=15.06;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:60:530,60,0
chrXIV	300738	.	G	C	491	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=14.44;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:60:524,60,0
chrXIV	301119	.	A	T	242	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.03;MQ0=0;QD=20.17;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:30:275,30,0
chrXIV	301186	.	G	T	100.26	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=15.3643;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=5.28;SB=-2.727e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:15:133,15,0
chrXIV	301290	.	T	C	712	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.97;SB=-1.040e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:84:745,84,0
chrXIV	301506	.	A	G	502	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.08;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,25:25:60:535,60,0
chrXIV	301548	.	T	A	750	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.43;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:87:783,87,0
chrXIV	301618	.	A	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=21.13;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1153,126,0
chrXIV	301781	.	C	G	1021	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=17.91;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:57:99:1054,120,0
chrXIV	301794	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0612;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=17.52;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1189,129,0
chrXIV	301887	.	C	G	657	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=19.91;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:81:690,81,0
chrXIV	301936	.	A	C	975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=50;Dels=0.00;FS=3.372;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=1.109;QD=19.50;ReadPosRankSum=1.594;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1008,114,0
chrXIV	301978	.	A	T	758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=61;Dels=0.00;FS=3.053;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-1.519;QD=12.43;ReadPosRankSum=2.126;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:90:791,90,0
chrXIV	301979	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.454;DP=62;Dels=0.00;FS=3.063;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.498;QD=11.84;ReadPosRankSum=2.052;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:90:767,90,0
chrXIV	302118	.	A	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=19.71;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1649,186,0
chrXIV	302222	.	C	T	1344	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=20.68;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1377,150,0
chrXIV	302243	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=20.44;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1239,135,0
chrXIV	302346	.	A	G	887	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=18.10;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,47:49:99:920,102,0
chrXIV	302380	.	T	C	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.475;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=-0.979;QD=17.74;ReadPosRankSum=1.682;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1257,141,0
chrXIV	302384	.	T	C	1235	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=17.64;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1268,138,0
chrXIV	302459	.	G	T	47.97	filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.04;FS=0.000;HaplotypeScore=61.6483;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=0.62;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:9:80,9,0
chrXIV	302463	.	G	T	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=79;Dels=0.03;FS=0.000;HaplotypeScore=61.8897;MLEAC=2;MLEAF=1.00;MQ=42.65;MQ0=0;QD=0.33;SB=-9.798e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:6:57,6,0
chrXIV	302635	.	C	T	2268	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.00;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2301,258,0
chrXIV	302640	.	T	A	2123	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.44;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2156,234,0
chrXIV	302877	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.63;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1564,177,0
chrXIV	302943	.	T	C	2404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.150;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=1.415;QD=22.47;ReadPosRankSum=2.312;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2437,251,0
chrXIV	303090	.	T	C	1053	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.87;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1086,123,0
chrXIV	303243	.	T	C	1248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.302;DP=62;Dels=0.00;FS=14.835;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.317;QD=20.13;ReadPosRankSum=3.211;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:4,55:62:99:1281,144,0
chrXIV	303460	.	G	T	2278	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=22.78;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2311,249,0
chrXIV	303465	.	T	G	2197	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.75;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2230,255,0
chrXIV	303657	.	C	T	888	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.08;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:921,99,0
chrXIV	303695	.	G	A	983	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1741;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=15.85;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1016,114,0
chrXIV	303956	.	T	C	1853	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.71;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1886,213,0
chrXIV	304058	.	G	A	1297	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.65;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1330,144,0
chrXIV	304064	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=16.47;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1186,132,0
chrXIV	304122	.	G	A	2071	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.1417;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.57;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2104,228,0
chrXIV	304313	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.25;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2013,222,0
chrXIV	304693	.	C	T	1127	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=50.1663;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=20.49;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1160,123,0
chrXIV	304761	.	A	G	957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-1.237;QD=19.14;ReadPosRankSum=1.662;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:990,111,0
chrXIV	304801	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.94;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1547,174,0
chrXIV	304886	.	G	A	2012	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5112;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.74;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2045,222,0
chrXIV	305066	.	A	G	784	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=14.79;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:93:817,93,0
chrXIV	305067	.	T	C	820	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=15.77;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:853,93,0
chrXIV	305136	.	G	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=17.45;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1185,132,0
chrXIV	305166	.	C	T	1879	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.60;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1912,207,0
chrXIV	305299	.	A	G	1806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.697;HaplotypeScore=9.1304;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.042;QD=21.76;ReadPosRankSum=1.690;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1839,210,0
chrXIV	305568	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=20.19;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1729,195,0
chrXIV	305637	.	G	T	1081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.8254;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.635;QD=18.02;ReadPosRankSum=0.577;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1114,120,0
chrXIV	305670	.	A	G	1112	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.11;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1145,129,0
chrXIV	305724	.	A	G	1310	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.47;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1343,150,0
chrXIV	305863	.	A	G	2816	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=23.47;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2849,324,0
chrXIV	305936	.	T	C	932	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=45.31;MQ0=0;QD=16.64;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:965,111,0
chrXIV	305988	.	G	A	768	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=13.96;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:801,90,0
chrXIV	305989	.	C	G	761	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=13.84;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:794,90,0
chrXIV	306024	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=18.15;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1140,132,0
chrXIV	306047	.	G	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.62;MQ0=0;QD=18.76;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1346,147,0
chrXIV	306244	.	T	C	2425	SnpCluster	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=15.85;SB=-1.644e+03	GT:AD:DP:GQ:PL	1/1:0,151:153:99:2458,276,0
chrXIV	306250	.	A	G	2329	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.951;DP=144;Dels=0.00;FS=5.950;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;MQRankSum=-2.378;QD=16.17;ReadPosRankSum=2.951;SB=-1.696e+03	GT:AD:DP:GQ:PL	1/1:3,141:144:99:2362,273,0
chrXIV	306252	.	C	T	2417	SnpCluster	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=106.2538;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=17.14;SB=-1.758e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:2450,267,0
chrXIV	306286	.	G	A	1971	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=14.28;SB=-1.736e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2004,219,0
chrXIV	306300	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.9409;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=13.37;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:1691,192,0
chrXIV	306326	.	C	T	1748	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=45.53;MQ0=0;QD=14.57;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:1781,198,0
chrXIV	307339	.	G	A	2640	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.2336;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.96;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2673,297,0
chrXIV	307665	.	T	C	2000	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.4893;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.05;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2033,228,0
chrXIV	307785	.	A	G	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=101;Dels=0.00;FS=8.389;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.709;QD=21.74;ReadPosRankSum=2.400;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:2,97:101:99:2229,255,0
chrXIV	307827	.	A	G	2022	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.0914;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.72;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2055,234,0
chrXIV	307869	.	G	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.79;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1406,153,0
chrXIV	307920	.	G	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.59;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1242,141,0
chrXIV	308154	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=17.51;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1399,156,0
chrXIV	308270	.	C	T	974	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=18.38;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1007,111,0
chrXIV	308304	.	G	A	859	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=-0.217;QD=17.90;ReadPosRankSum=1.516;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:892,99,0
chrXIV	308305	.	A	G	829	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=-1.588;QD=17.27;ReadPosRankSum=1.588;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:96:862,96,0
chrXIV	308412	.	A	G	759	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=17.65;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:90:792,90,0
chrXIV	308436	.	A	G	821	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=16.76;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:96:854,96,0
chrXIV	308673	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=22.22;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1166,126,0
chrXIV	309059	.	A	G	955	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.32;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:988,111,0
chrXIV	309212	.	T	C	610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.459;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.182;QD=15.64;ReadPosRankSum=1.641;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:1,37:39:72:643,72,0
chrXIV	309245	.	T	C	978	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.181;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=0.133;QD=18.81;ReadPosRankSum=1.599;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1011,114,0
chrXIV	309362	.	T	C	828	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.62;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:861,99,0
chrXIV	309497	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.11;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1025,120,0
chrXIV	309823	.	C	T	2043	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.21;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2076,225,0
chrXIV	310003	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.95;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1070,120,0
chrXIV	310045	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.48;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1729,192,0
chrXIV	310181	.	A	G	1800	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.18;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1833,207,0
chrXIV	310209	.	C	G	1265	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.44;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1298,144,0
chrXIV	310493	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=2.902;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-1.233;QD=21.39;ReadPosRankSum=2.258;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1680,186,0
chrXIV	310616	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5246;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=19.38;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1448,165,0
chrXIV	310625	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.58;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1494,162,0
chrXIV	310689	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=22.56;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1657,189,0
chrXIV	310715	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=22.36;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1665,180,0
chrXIV	310729	.	A	G	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.4752;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=0.422;QD=19.55;ReadPosRankSum=1.690;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1656,186,0
chrXIV	311115	.	G	A	1611	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.65;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1644,183,0
chrXIV	311133	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=19.84;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1600,174,0
chrXIV	311376	.	C	T	968	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.98;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1001,108,0
chrXIV	311556	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.06;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1423,153,0
chrXIV	311614	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.229;QD=18.77;ReadPosRankSum=0.894;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1197,135,0
chrXIV	311670	.	A	T	807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6940;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;MQRankSum=-1.439;QD=13.68;ReadPosRankSum=1.674;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:96:840,96,0
chrXIV	311673	.	G	T	1003	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=17.00;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1036,111,0
chrXIV	312312	.	A	G	1891	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=5.509;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;MQRankSum=-0.397;QD=19.70;ReadPosRankSum=1.696;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1924,216,0
chrXIV	312686	.	T	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.98;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1722,195,0
chrXIV	312912	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.89;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1393,153,0
chrXIV	313160	.	G	A	1322	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.66;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1355,150,0
chrXIV	313182	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.29;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1437,159,0
chrXIV	313387	.	C	T	1738	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2212;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.94;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1771,192,0
chrXIV	313482	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.19;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1002,111,0
chrXIV	313665	.	G	A	749	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=18.72;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:782,84,0
chrXIV	313792	.	C	T	1138	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.47;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1171,129,0
chrXIV	313908	.	A	G	1604	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.83;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1637,180,0
chrXIV	313965	.	T	C	935	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.86;MQ0=0;QD=21.25;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:968,105,0
chrXIV	314230	.	G	A	1477	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.96;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1510,162,0
chrXIV	314331	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.80;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1320,150,0
chrXIV	314373	.	C	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=19.23;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1206,129,0
chrXIV	314700	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1487,168,0
chrXIV	314885	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.7203;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.99;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1775,198,0
chrXIV	314976	.	G	A	2110	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.1335;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.71;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2143,234,0
chrXIV	315076	.	C	T	2102	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.61;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2135,231,0
chrXIV	315396	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.056;QD=18.27;ReadPosRankSum=2.375;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1239,141,0
chrXIV	315475	.	G	A	1582	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.60;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1615,177,0
chrXIV	315726	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1256,147,0
chrXIV	315771	.	G	A	1348	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=22.85;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1381,150,0
chrXIV	315912	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.333;QD=23.35;ReadPosRankSum=1.599;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1247,138,0
chrXIV	316199	.	T	C	1900	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=0.282;QD=22.09;ReadPosRankSum=1.611;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1933,219,0
chrXIV	316244	.	C	T	1190	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=17.50;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1223,132,0
chrXIV	316253	.	A	G	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.076;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=-1.267;QD=16.37;ReadPosRankSum=1.681;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1146,129,0
chrXIV	316782	.	C	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.61;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1243,135,0
chrXIV	316808	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=20.28;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1108,129,0
chrXIV	316955	.	G	A	1477	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.04;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1510,159,0
chrXIV	317015	.	G	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.26;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1046,117,0
chrXIV	317078	.	T	C	1208	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.37;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1241,138,0
chrXIV	317738	.	A	T	1736	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.70;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1769,195,0
chrXIV	318057	.	C	T	1798	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.93;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1831,198,0
chrXIV	318127	.	C	T	1942	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.32;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1975,213,0
chrXIV	318162	.	T	C	1577	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5165;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.22;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1610,180,0
chrXIV	318393	.	A	T	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=2.818;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.044;QD=19.24;ReadPosRankSum=2.362;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1649,177,0
chrXIV	318591	.	G	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.82;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1361,150,0
chrXIV	318794	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.36;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1373,153,0
chrXIV	318818	.	G	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.73;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1434,162,0
chrXIV	319024	.	A	T	1506	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.10;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1539,168,0
chrXIV	319149	.	A	G	1679	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5425;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=24.33;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1712,189,0
chrXIV	319268	.	C	T	2126	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.4837;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.25;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2159,237,0
chrXIV	319642	.	T	C	1965	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.047;QD=21.59;ReadPosRankSum=1.656;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1998,228,0
chrXIV	319911	.	G	A	1707	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.02;FS=0.000;HaplotypeScore=28.4946;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.85;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1740,189,0
chrXIV	321214	.	A	G	1614	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=22.42;SB=-2.560e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1647,183,0
chrXIV	321588	.	T	A	1827	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=25.03;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1860,195,0
chrXIV	321987	.	T	G	1403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.102;QD=18.22;ReadPosRankSum=-0.427;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1436,165,0
chrXIV	322059	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.89;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1412,159,0
chrXIV	322144	.	C	T	1087	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.18;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1120,120,0
chrXIV	322462	.	A	G	994	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.15;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1027,120,0
chrXIV	322769	.	C	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.67;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1619,174,0
chrXIV	322936	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.84;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1200,132,0
chrXIV	323011	.	T	G	1062	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=19.67;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1095,126,0
chrXIV	323069	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.72;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1362,153,0
chrXIV	323081	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=18.24;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1474,159,0
chrXIV	323087	.	C	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=16.06;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1350,147,0
chrXIV	323136	.	A	G	1566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=5.014;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.904;QD=17.02;ReadPosRankSum=1.694;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1599,183,0
chrXIV	323238	.	A	C	1634	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.17;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1667,192,0
chrXIV	323309	.	A	G	1972	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=5.973;HaplotypeScore=6.6410;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.161;QD=21.67;ReadPosRankSum=1.694;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2005,219,0
chrXIV	323530	.	A	G	1701	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=19.55;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1734,192,0
chrXIV	323874	.	C	G	1357	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0320;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.96;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1390,159,0
chrXIV	324247	.	G	C	760	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=16.89;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:793,93,0
chrXIV	324447	.	C	T	2253	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.23;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2286,246,0
chrXIV	328472	.	T	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.34;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1986,222,0
chrXIV	328483	.	G	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.56;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1842,198,0
chrXIV	328670	.	T	C	1996	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.58;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2029,222,0
chrXIV	329212	.	T	G	1382	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=17.49;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1415,162,0
chrXIV	329339	.	A	G	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-0.067;QD=21.85;ReadPosRankSum=1.666;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1169,129,0
chrXIV	329474	.	T	C	1687	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.10;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1720,198,0
chrXIV	330243	.	G	A	1859	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=22.95;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1892,201,0
chrXIV	330284	.	A	T	1518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.819;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;MQRankSum=0.590;QD=16.68;ReadPosRankSum=1.580;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1551,168,0
chrXIV	330285	.	T	G	1437	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.52;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1470,165,0
chrXIV	330365	.	A	G	1800	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=22.22;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1833,198,0
chrXIV	330395	.	G	A	1912	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.49;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1945,210,0
chrXIV	330503	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.830;QD=18.91;ReadPosRankSum=1.624;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1848,204,0
chrXIV	330713	.	G	T	2081	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.68;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2114,228,0
chrXIV	330944	.	G	T	3686.01	PASS	AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=10.5282;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.71;SB=-1.864e+03	GT:AD:DP:GQ:PL	1/1:0,178:178:99:3686,411,0
chrXIV	331023	.	T	C	3081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=134;Dels=0.00;FS=8.653;HaplotypeScore=7.8371;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=1.575;QD=22.99;ReadPosRankSum=1.286;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:2,131:134:99:3114,351,0
chrXIV	331067	.	G	A	3452.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=10.5316;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=23.17;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,148:149:99:3452,396,0
chrXIV	331401	.	C	T	3667.01	PASS	AC=2;AF=1.00;AN=2;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=14.8388;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.51;SB=-1.949e+03	GT:AD:DP:GQ:PL	1/1:0,186:188:99:3667,405,0
chrXIV	331411	.	T	C	3160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=157;Dels=0.00;FS=2.943;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;MQRankSum=0.864;QD=20.13;ReadPosRankSum=2.418;SB=-1.734e+03	GT:AD:DP:GQ:PL	1/1:2,153:157:99:3193,351,0
chrXIV	331752	.	T	A	4348.01	PASS	AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=9.0791;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.25;SB=-2.290e+03	GT:AD:DP:GQ:PL	1/1:0,187:187:99:4348,471,0
chrXIV	331884	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.91;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1685,189,0
chrXIV	332417	.	T	G	1225	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.49;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1258,138,0
chrXIV	332894	.	T	C	918	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=11.20;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:951,108,0
chrXIV	332987	.	G	A	2043	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7493;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.06;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2076,225,0
chrXIV	333180	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.33;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:913,105,0
chrXIV	333289	.	G	A	569	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=22.7568;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=9.33;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:66:602,66,0
chrXIV	333895	.	C	T	985	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.31;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1018,111,0
chrXIV	333907	.	G	A	940	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=18.08;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:973,108,0
chrXIV	334339	.	G	A	1674	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1421;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.93;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1707,183,0
chrXIV	335000	.	T	A	2414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.323;QD=21.75;ReadPosRankSum=1.638;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:1,109:111:99:2447,264,0
chrXIV	335033	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=7.027;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.215;QD=21.35;ReadPosRankSum=2.368;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1314,150,0
chrXIV	335197	.	G	A	3220.05	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=22.84;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3253,360,0
chrXIV	335341	.	A	T	980	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=15.81;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1013,111,0
chrXIV	335376	.	A	G	459	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;MQRankSum=-0.774;QD=9.77;ReadPosRankSum=1.659;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:57:492,57,0
chrXIV	335395	.	G	A	492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=41;Dels=0.00;FS=4.667;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=1.648;QD=12.00;ReadPosRankSum=-0.296;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:57:525,57,0
chrXIV	335707	.	T	G	834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=-1.578;QD=18.53;ReadPosRankSum=1.655;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:867,99,0
chrXIV	336158	.	T	C	1542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=67;Dels=0.00;FS=6.771;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.861;QD=23.01;ReadPosRankSum=2.376;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1575,177,0
chrXIV	336315	.	C	G	1743	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.64;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1776,204,0
chrXIV	336508	.	A	T	2188	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=23.28;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2221,243,0
chrXIV	336616	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.115;QD=21.60;ReadPosRankSum=-0.024;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1610,171,0
chrXIV	336941	.	G	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=16.55;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1324,150,0
chrXIV	336952	.	A	G	1171	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;MQRankSum=0.241;QD=16.04;ReadPosRankSum=1.684;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1204,138,0
chrXIV	336970	.	A	C	1206	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=16.30;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1239,138,0
chrXIV	337051	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.80;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1696,186,0
chrXIV	337877	.	G	A	2093	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.52;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2126,231,0
chrXIV	337949	.	T	C	1889	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=22.22;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1922,216,0
chrXIV	338161	.	T	C	2281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=105;Dels=0.00;FS=3.004;HaplotypeScore=6.9978;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.715;QD=21.72;ReadPosRankSum=2.379;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:2,103:105:99:2314,264,0
chrXIV	338359	.	C	T	2527	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.42;SB=-1.515e+03	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2560,279,0
chrXIV	338360	.	A	G	2431	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.96;SB=-1.483e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2464,279,0
chrXIV	338424	.	G	A	1970	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.74;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2003,216,0
chrXIV	338522	.	G	T	1696	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.7611;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=16.96;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1729,192,0
chrXIV	338586	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.86;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1781,195,0
chrXIV	338610	.	T	C	1879	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.57;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1912,216,0
chrXIV	338838	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2638;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.138;QD=18.74;ReadPosRankSum=1.633;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1345,153,0
chrXIV	339555	.	C	T	2486	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2818;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.45;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2519,273,0
chrXIV	339819	.	G	A	2249	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8160;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.49;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2282,246,0
chrXIV	340266	.	A	T	1703	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.35;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1736,198,0
chrXIV	340286	.	A	T	1275	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.96;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1308,147,0
chrXIV	340288	.	A	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.37;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1319,147,0
chrXIV	340397	.	A	G	852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;MQRankSum=-0.133;QD=16.38;ReadPosRankSum=1.666;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:885,99,0
chrXIV	340398	.	C	T	915	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=17.60;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:948,102,0
chrXIV	340618	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.59;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1495,168,0
chrXIV	340804	.	G	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.80;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1948,213,0
chrXIV	340939	.	G	A	2092	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.4307;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.02;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2125,228,0
chrXIV	340949	.	G	A	1983	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.79;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2016,216,0
chrXIV	340976	.	T	C	2195	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.42;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2228,249,0
chrXIV	341067	.	C	A	3146	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.6923;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.65;SB=-1.660e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3179,348,0
chrXIV	341465	.	G	A	1701	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.68;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1734,189,0
chrXIV	341642	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=76;Dels=0.00;FS=2.733;HaplotypeScore=6.2999;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.510;QD=16.57;ReadPosRankSum=2.351;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1292,144,0
chrXIV	341705	.	A	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.0115;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=15.62;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1158,129,0
chrXIV	341727	.	G	A	1188	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=16.05;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1221,132,0
chrXIV	341764	.	G	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.89;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1607,183,0
chrXIV	342049	.	C	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.18;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1473,159,0
chrXIV	342273	.	C	G	1103	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.43;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1136,129,0
chrXIV	342370	.	A	G	1047	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.94;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1080,120,0
chrXIV	342707	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=23.29;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1407,156,0
chrXIV	342793	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.82;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1146,129,0
chrXIV	342811	.	C	A	1150	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.18;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1183,129,0
chrXIV	342839	.	T	C	1543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.087;HaplotypeScore=3.2018;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=0.634;QD=18.82;ReadPosRankSum=1.690;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1576,180,0
chrXIV	342841	.	C	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=19.42;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1645,177,0
chrXIV	342917	.	G	T	2591	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=124;Dels=0.00;FS=3.155;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.448;QD=20.90;ReadPosRankSum=0.909;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:1,122:124:99:2624,294,0
chrXIV	343922	.	G	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=18.56;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1332,147,0
chrXIV	344176	.	A	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.5279;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.48;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1253,135,0
chrXIV	344260	.	G	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.05;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1316,150,0
chrXIV	344329	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-1.207;QD=19.80;ReadPosRankSum=1.627;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1340,150,0
chrXIV	344398	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.04;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1004,108,0
chrXIV	344873	.	T	G	1558	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.58;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1591,180,0
chrXIV	345058	.	C	T	1540	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5203;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.00;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1573,171,0
chrXIV	345099	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.16;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1566,174,0
chrXIV	345121	.	G	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=18.00;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1491,168,0
chrXIV	345349	.	G	A	1363	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=10.9613;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.04;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1396,150,0
chrXIV	345668	.	T	C	2016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;DP=102;Dels=0.00;FS=11.748;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=-1.149;QD=19.76;ReadPosRankSum=2.832;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:3,99:102:99:2049,225,0
chrXIV	345712	.	A	G	2278	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.67;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2311,258,0
chrXIV	345744	.	G	A	2319	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=18.0480;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=18.55;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2352,261,0
chrXIV	345915	.	G	A	2344	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.6549;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.74;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2377,252,0
chrXIV	346068	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=17.79;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1403,153,0
chrXIV	346103	.	T	G	1333	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.51;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1366,156,0
chrXIV	346115	.	A	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.01;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1309,147,0
chrXIV	346414	.	A	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.49;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1585,177,0
chrXIV	346690	.	T	A	1628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;DP=75;Dels=0.00;FS=2.619;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.906;QD=21.71;ReadPosRankSum=2.879;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1661,180,0
chrXIV	347194	.	T	C	2401	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.31;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2434,273,0
chrXIV	347234	.	G	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1446,156,0
chrXIV	347308	.	T	C	995	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=17.77;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1028,114,0
chrXIV	347517	.	A	G	1892	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.02;SB=-3.490e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1925,213,0
chrXIV	347615	.	T	C	1813	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4593;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.11;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1846,210,0
chrXIV	347708	.	G	C	1060	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.20;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1093,123,0
chrXIV	347728	.	A	G	851	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.419;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=-0.387;QD=17.37;ReadPosRankSum=2.296;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:2,46:49:99:884,99,0
chrXIV	347745	.	T	C	740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;MQRankSum=-0.389;QD=15.10;ReadPosRankSum=1.662;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:87:773,87,0
chrXIV	347763	.	C	T	867	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=16.36;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:900,102,0
chrXIV	347988	.	T	C	1063	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.02;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1096,126,0
chrXIV	348360	.	T	C	1449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.586;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.527;QD=21.00;ReadPosRankSum=1.632;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1482,168,0
chrXIV	348462	.	G	A	1544	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.8519;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;QD=18.60;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1577,171,0
chrXIV	348465	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=84;Dels=0.00;FS=9.038;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;MQRankSum=-0.044;QD=16.89;ReadPosRankSum=2.391;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1452,165,0
chrXIV	348486	.	C	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=15.55;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1464,165,0
chrXIV	348533	.	G	A	1446	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.8188;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=13.77;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1479,162,0
chrXIV	348537	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=107;Dels=0.00;FS=2.700;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=50.55;MQ0=0;MQRankSum=-1.236;QD=11.79;ReadPosRankSum=2.765;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:3,104:107:99:1295,147,0
chrXIV	348669	.	G	A	742	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=18.55;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:775,84,0
chrXIV	348777	.	C	T	748	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.58;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:781,84,0
chrXIV	348823	.	T	C	868	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=16.07;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:901,102,0
chrXIV	348831	.	A	C	869	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=14.73;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:902,102,0
chrXIV	348835	.	A	T	939	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=15.39;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:972,108,0
chrXIV	348847	.	A	G	916	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=14.31;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:949,108,0
chrXIV	348902	.	A	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.80;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1947,216,0
chrXIV	348931	.	C	T	1916	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=21.53;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1949,216,0
chrXIV	348937	.	T	C	1870	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=21.74;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1903,216,0
chrXIV	349014	.	G	A	626	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=16.47;SB=-1.830e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:659,72,0
chrXIV	349029	.	C	T	743	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=44.5653;MLEAC=2;MLEAF=1.00;MQ=44.98;MQ0=0;QD=15.16;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:776,87,0
chrXIV	349058	.	G	C	670	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=10.81;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:78:703,78,0
chrXIV	349064	.	T	G	552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4960;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=-0.720;QD=8.49;ReadPosRankSum=1.679;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:69:585,69,0
chrXIV	349343	.	G	A	1529	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7406;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=17.18;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1562,171,0
chrXIV	349351	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=15.69;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1351,153,0
chrXIV	349357	.	C	T	1183	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;QD=14.43;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1216,135,0
chrXIV	349397	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=16.23;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1510,174,0
chrXIV	349523	.	T	C	1479	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.83;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1512,171,0
chrXIV	349556	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=17.92;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1162,129,0
chrXIV	349827	.	A	C	40.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.094;DP=79;Dels=0.04;FS=6.277;HaplotypeScore=125.4059;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;MQRankSum=0.301;QD=0.52;ReadPosRankSum=-5.496;SB=-5.397e+01	GT:AD:DP:GQ:PL	1/1:55,15:76:9:73,9,0
chrXIV	349972	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=1.039;QD=18.78;ReadPosRankSum=1.679;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1254,144,0
chrXIV	349976	.	T	A	1190	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.19;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1223,132,0
chrXIV	350057	.	C	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.75;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1083,117,0
chrXIV	350393	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.68;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1605,171,0
chrXIV	350459	.	G	A	1312	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=3.941;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=1.611;QD=22.62;ReadPosRankSum=0.821;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1345,147,0
chrXIV	350601	.	C	T	936	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=20.35;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:969,102,0
chrXIV	350676	.	T	C	817	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.30;MQ0=0;QD=16.67;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:96:850,96,0
chrXIV	350696	.	C	T	964	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=13.39;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:997,108,0
chrXIV	350848	.	A	C	1229	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.15;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1262,144,0
chrXIV	350910	.	T	A	1093	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.86;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1126,120,0
chrXIV	350980	.	T	C	1586	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=21.15;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1619,183,0
chrXIV	350992	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=20.49;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1570,180,0
chrXIV	351006	.	C	G	1385	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=17.99;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1418,162,0
chrXIV	351009	.	A	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=16.89;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1384,153,0
chrXIV	351050	.	T	G	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-1.128;QD=17.40;ReadPosRankSum=1.692;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1529,174,0
chrXIV	351221	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.95;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1350,156,0
chrXIV	351622	.	T	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.91;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1413,159,0
chrXIV	351777	.	A	G	2362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.135;DP=125;Dels=0.00;FS=12.399;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.330;QD=18.90;ReadPosRankSum=3.374;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:4,121:125:99:2395,273,0
chrXIV	351850	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.28;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1757,189,0
chrXIV	351884	.	G	A	1784	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.74;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1817,195,0
chrXIV	352437	.	C	T	535	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=12.16;SB=-1.680e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:63:568,63,0
chrXIV	352641	.	C	G	1355	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.93;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1388,156,0
chrXIV	352733	.	G	C	1105	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=16.25;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1138,129,0
chrXIV	353010	.	G	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.40;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:68:99:1420,162,0
chrXIV	353111	.	C	T	2061	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.69;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2094,225,0
chrXIV	353151	.	T	C	1826	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2490;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.52;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1859,207,0
chrXIV	353234	.	A	G	1812	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.36;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1845,210,0
chrXIV	353453	.	C	T	1656	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.82;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1689,183,0
chrXIV	353490	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=15.79;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1154,129,0
chrXIV	353696	.	C	T	3049	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=13.6083;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.82;SB=-1.757e+03	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3082,348,0
chrXIV	353732	.	C	T	2836	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.56;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:2869,309,0
chrXIV	353786	.	A	T	1901	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.22;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1934,216,0
chrXIV	353924	.	G	A	994	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.41;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1027,111,0
chrXIV	354053	.	T	C	1479	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=20.54;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1512,168,0
chrXIV	354061	.	C	T	1356	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=19.37;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1389,150,0
chrXIV	354131	.	G	C	1014	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=15.36;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1047,120,0
chrXIV	354641	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8490;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.70;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1360,156,0
chrXIV	354740	.	A	G	1333	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8005;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=20.51;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1366,150,0
chrXIV	354924	.	G	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.9289;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.91;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1706,183,0
chrXIV	354992	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7924;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.506;QD=17.52;ReadPosRankSum=1.679;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1189,135,0
chrXIV	355079	.	C	T	796	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=18.51;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:90:829,90,0
chrXIV	355610	.	C	T	600	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.18;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:69:633,69,0
chrXIV	355746	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.72;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1354,147,0
chrXIV	355832	.	A	G	1419	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.52;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1452,165,0
chrXIV	355861	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.02;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1420,159,0
chrXIV	355985	.	C	T	2058	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=26.05;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2091,225,0
chrXIV	356010	.	C	T	2035	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5033;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.94;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2068,228,0
chrXIV	356062	.	A	G	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=-0.016;QD=22.94;ReadPosRankSum=2.386;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1799,204,0
chrXIV	356361	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=15.74;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1371,150,0
chrXIV	356370	.	C	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=15.82;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1330,144,0
chrXIV	356379	.	A	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=15.76;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1388,153,0
chrXIV	356489	.	T	C	2458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.093;QD=22.97;ReadPosRankSum=2.404;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:2,105:107:99:2491,285,0
chrXIV	356515	.	C	T	2058	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.66;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2091,231,0
chrXIV	356568	.	T	G	1894	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.37;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1927,222,0
chrXIV	356615	.	A	C	2129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.221;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=1.335;QD=20.08;ReadPosRankSum=2.357;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2162,243,0
chrXIV	356637	.	G	T	2098	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=20.57;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2131,237,0
chrXIV	356668	.	T	C	2081	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.44;MQ0=0;QD=20.40;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2114,240,0
chrXIV	356684	.	T	C	2109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=-1.182;QD=19.53;ReadPosRankSum=1.667;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2142,249,0
chrXIV	356726	.	T	C	1968	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;MQRankSum=-0.130;QD=21.16;ReadPosRankSum=1.658;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2001,225,0
chrXIV	356876	.	A	G	1082	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.730;QD=14.24;ReadPosRankSum=2.385;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1115,129,0
chrXIV	356935	.	T	A	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=-1.586;QD=17.22;ReadPosRankSum=1.000;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1290,141,0
chrXIV	357088	.	A	G	1659	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.347;DP=82;Dels=0.00;FS=13.277;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=1.797;QD=20.23;ReadPosRankSum=3.347;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:4,78:82:99:1692,192,0
chrXIV	357145	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=69;Dels=0.00;FS=5.315;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.357;QD=19.80;ReadPosRankSum=1.325;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1399,159,0
chrXIV	357250	.	G	A	604	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=14.05;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:637,75,0
chrXIV	357311	.	A	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.31;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1394,153,0
chrXIV	357348	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.881;DP=110;Dels=0.00;FS=17.713;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;MQRankSum=-1.798;QD=17.49;ReadPosRankSum=2.312;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:3,107:110:99:1957,219,0
chrXIV	357361	.	A	T	2270	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-1.230;QD=16.45;ReadPosRankSum=1.657;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:1,137:138:99:2303,252,0
chrXIV	357370	.	A	G	2370	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=15.49;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,152:153:99:2403,264,0
chrXIV	357524	.	T	C	1748	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=19.21;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1781,204,0
chrXIV	357854	.	A	G	1789	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=18.64;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1822,207,0
chrXIV	357873	.	C	T	1978	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2046;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.98;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2011,219,0
chrXIV	358067	.	T	C	1656	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=20.96;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1689,186,0
chrXIV	358300	.	G	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.03;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1685,186,0
chrXIV	358346	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.22;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1408,159,0
chrXIV	358507	.	G	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4839;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=17.43;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1567,174,0
chrXIV	358519	.	C	G	1644	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=17.49;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1677,192,0
chrXIV	358643	.	A	G	2222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.602;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.575;QD=20.20;ReadPosRankSum=1.701;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2255,258,0
chrXIV	358757	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.56;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1680,183,0
chrXIV	358865	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=18.97;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1494,171,0
chrXIV	358910	.	T	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=17.73;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1682,183,0
chrXIV	359017	.	T	A	2141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=107;Dels=0.00;FS=5.380;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.113;QD=20.01;ReadPosRankSum=1.700;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2174,240,0
chrXIV	359040	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.812;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9810;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;MQRankSum=1.137;QD=20.72;ReadPosRankSum=1.678;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1359,150,0
chrXIV	359088	.	C	G	922	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.61;MQ0=0;QD=18.82;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:955,111,0
chrXIV	359114	.	C	T	987	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=19.35;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1020,111,0
chrXIV	359116	.	A	T	1001	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.46;MQ0=0;QD=19.63;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1034,111,0
chrXIV	359140	.	A	G	596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.69;MQ0=0;MQRankSum=-1.732;QD=12.96;ReadPosRankSum=1.657;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:72:629,72,0
chrXIV	359147	.	G	A	584	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.24;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:617,66,0
chrXIV	359155	.	A	T	573	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.69;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:66:606,66,0
chrXIV	359159	.	C	G	568	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.85;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:601,66,0
chrXIV	359163	.	A	T	548	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.45;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:63:581,63,0
chrXIV	359182	.	A	C	406	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.75;MQ0=0;QD=12.30;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:51:439,51,0
chrXIV	359204	.	T	C	467	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=15.06;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:500,57,0
chrXIV	359246	.	T	A	875	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.23;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:908,102,0
chrXIV	359285	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=18.59;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1297,144,0
chrXIV	359506	.	T	G	1338	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=23.89;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1371,153,0
chrXIV	360426	.	T	C	1491	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.71;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1524,177,0
chrXIV	360781	.	G	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=20.68;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1977,210,0
chrXIV	361125	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=18.66;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1563,174,0
chrXIV	361314	.	G	T	1214	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.97;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1247,138,0
chrXIV	361325	.	C	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.27;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1202,132,0
chrXIV	361529	.	C	A	1259	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.25;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1292,138,0
chrXIV	361589	.	A	G	918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.646;DP=61;Dels=0.00;FS=11.193;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.678;QD=15.05;ReadPosRankSum=2.883;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:3,57:61:99:951,111,0
chrXIV	361812	.	G	C	983	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=16.38;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1016,114,0
chrXIV	361814	.	C	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.70;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1113,120,0
chrXIV	362483	.	G	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=22.23;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1567,171,0
chrXIV	362538	.	T	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=20.36;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1621,177,0
chrXIV	362544	.	C	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.35;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1641,183,0
chrXIV	362791	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.57;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1435,153,0
chrXIV	362793	.	C	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.48;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1386,150,0
chrXIV	362940	.	T	C	1479	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=19.21;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1512,168,0
chrXIV	362946	.	A	C	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=9.544;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.917;QD=18.38;ReadPosRankSum=2.383;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1393,156,0
chrXIV	362970	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=18.40;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1321,141,0
chrXIV	362994	.	T	C	1032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;MQRankSum=-0.907;QD=16.12;ReadPosRankSum=1.677;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1065,120,0
chrXIV	363057	.	G	A	2811	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=12.5619;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.62;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:0,127:130:99:2844,306,0
chrXIV	363141	.	G	A	3553.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.8325;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.50;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:3553,384,0
chrXIV	363258	.	C	T	2101	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.35;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2134,228,0
chrXIV	363303	.	A	G	1959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.212;DP=94;Dels=0.00;FS=9.014;HaplotypeScore=9.0795;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;MQRankSum=-0.290;QD=20.84;ReadPosRankSum=3.325;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:4,90:94:99:1992,222,0
chrXIV	363378	.	T	C	3164	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=22.44;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3197,348,0
chrXIV	363390	.	G	A	3108	SnpCluster	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=22.04;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3141,345,0
chrXIV	363393	.	T	G	3115	SnpCluster	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.05;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3148,354,0
chrXIV	363396	.	A	G	3078	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;MQRankSum=1.481;QD=19.86;ReadPosRankSum=1.641;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:1,151:155:99:3111,348,0
chrXIV	363496	.	T	C	2349	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.16;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2382,267,0
chrXIV	363549	.	G	A	1987	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.33;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2020,216,0
chrXIV	363861	.	C	T	1572	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.96;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1605,174,0
chrXIV	364611	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.09;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1102,123,0
chrXIV	364618	.	A	G	1059	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.25;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1092,120,0
chrXIV	364737	.	T	C	1509	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.2410;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.86;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1542,174,0
chrXIV	364966	.	G	A	2088	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.20;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2121,228,0
chrXIV	365449	.	G	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.3189;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.82;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1859,204,0
chrXIV	365714	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.8660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.34;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1716,186,0
chrXIV	365779	.	T	C	2243	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5244;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.36;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2276,261,0
chrXIV	366158	.	G	T	3501.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=10.5590;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.19;SB=-1.897e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3501,381,0
chrXIV	366434	.	A	C	1512	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.0748;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=13.62;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:1545,174,0
chrXIV	366439	.	T	A	1516	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=14.17;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1549,165,0
chrXIV	366552	.	T	C	2974	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=8.9137;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.47;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,160:161:99:3007,345,0
chrXIV	366581	.	G	T	3785.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=8.8059;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.13;SB=-1.931e+03	GT:AD:DP:GQ:PL	1/1:0,169:171:99:3785,414,0
chrXIV	367475	.	C	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.03;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1316,147,0
chrXIV	367502	.	A	G	1189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;MQRankSum=0.000;QD=20.86;ReadPosRankSum=0.247;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1222,141,0
chrXIV	367644	.	G	A	937	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:970,108,0
chrXIV	367703	.	T	C	933	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.44;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:966,111,0
chrXIV	367843	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.80;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2051,222,0
chrXIV	368045	.	C	T	2821	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.75;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2854,315,0
chrXIV	368183	.	C	T	2669	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.83;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2702,291,0
chrXIV	368391	.	G	A	4610.01	PASS	AC=2;AF=1.00;AN=2;DP=215;Dels=0.00;FS=0.000;HaplotypeScore=17.8551;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.44;SB=-1.732e+03	GT:AD:DP:GQ:PL	1/1:0,214:215:99:4610,507,0
chrXIV	368957	.	C	T	964	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=18.90;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:997,111,0
chrXIV	368967	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.1795;MLEAC=2;MLEAF=1.00;MQ=48.62;MQ0=0;MQRankSum=1.091;QD=17.94;ReadPosRankSum=1.540;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1002,111,0
chrXIV	369029	.	T	A	938	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=18.39;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:971,105,0
chrXIV	369030	.	G	A	935	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=17.98;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:968,105,0
chrXIV	369143	.	A	G	914	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.28;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:947,108,0
chrXIV	369343	.	C	T	1291	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.88;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1324,141,0
chrXIV	369348	.	T	C	1200	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-0.742;QD=19.05;ReadPosRankSum=1.622;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1233,135,0
chrXIV	369363	.	C	T	1131	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.24;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1164,126,0
chrXIV	369447	.	A	T	844	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.59;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:96:877,96,0
chrXIV	369591	.	G	A	1267	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.11;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1300,150,0
chrXIV	369651	.	T	C	1559	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.07;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1592,177,0
chrXIV	369711	.	A	T	1829	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.30;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1862,204,0
chrXIV	370196	.	T	G	1520	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=-1.217;QD=20.00;ReadPosRankSum=2.223;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1553,150,0
chrXIV	370841	.	G	C	1667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=79;Dels=0.00;FS=4.505;HaplotypeScore=10.4760;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.688;QD=21.10;ReadPosRankSum=1.601;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1700,172,0
chrXIV	371516	.	T	C	2211	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.26;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2244,252,0
chrXIV	371753	.	A	T	5071.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=207;Dels=0.00;FS=3.184;HaplotypeScore=13.6456;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.764;QD=24.50;ReadPosRankSum=1.715;SB=-2.587e+03	GT:AD:DP:GQ:PL	1/1:1,206:207:99:5071,552,0
chrXIV	371990	.	A	G	2572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.450;QD=20.91;ReadPosRankSum=2.410;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:2,121:123:99:2605,294,0
chrXIV	372107	.	G	A	1926	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.71;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1959,210,0
chrXIV	372259	.	C	T	1150	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=15.97;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1183,129,0
chrXIV	372919	.	T	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.81;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1552,171,0
chrXIV	373080	.	T	C	1253	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.40;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1286,144,0
chrXIV	373134	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.27;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1363,153,0
chrXIV	373375	.	G	A	1733	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.11;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1766,186,0
chrXIV	373632	.	T	A	40.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.140;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=2.177;QD=0.36;ReadPosRankSum=-4.215;SB=-6.397e+01	GT:AD:DP:GQ:PL	1/1:105,8:113:9:73,9,0
chrXIV	373766	.	C	A	2065	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5460;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.97;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2098,228,0
chrXIV	373799	.	A	G	1573	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.26;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1606,183,0
chrXIV	373912	.	A	T	1375	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5908;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.93;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1408,150,0
chrXIV	374054	.	G	A	2154	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.96;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2187,237,0
chrXIV	374078	.	G	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.03;FS=0.000;HaplotypeScore=11.4203;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=16.21;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1427,159,0
chrXIV	374157	.	T	G	1500	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.73;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1533,168,0
chrXIV	374306	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.20;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1108,126,0
chrXIV	374659	.	C	T	1242	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.11;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1275,144,0
chrXIV	374764	.	T	A	1168	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.54;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1201,135,0
chrXIV	374839	.	A	G	886	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.69;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:919,105,0
chrXIV	374970	.	T	A	1060	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.28;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1093,120,0
chrXIV	374985	.	A	T	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.191;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=-0.577;QD=21.00;ReadPosRankSum=1.677;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1356,147,0
chrXIV	375085	.	T	G	905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.395;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.246;QD=15.88;ReadPosRankSum=-1.672;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:80:938,80,0
chrXIV	375845	.	G	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.5572;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.87;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1977,216,0
chrXIV	375848	.	T	C	1907	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=104;Dels=0.00;FS=5.399;HaplotypeScore=4.2911;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=1.033;QD=18.34;ReadPosRankSum=1.666;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:1940,210,0
chrXIV	375878	.	A	G	1716	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=18.26;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1749,192,0
chrXIV	376313	.	C	T	2058	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.5502;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.66;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2091,225,0
chrXIV	376490	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=22.89;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1521,174,0
chrXIV	376598	.	A	G	1470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.1986;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.973;QD=19.86;ReadPosRankSum=1.685;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1503,171,0
chrXIV	376728	.	T	C	1832	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.49;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1865,204,0
chrXIV	376776	.	T	C	1717	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;QD=19.29;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1750,192,0
chrXIV	376841	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.3072;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=0.988;QD=16.29;ReadPosRankSum=0.988;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:2,94:96:99:1597,174,0
chrXIV	376844	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=16.0470;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=15.51;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1522,171,0
chrXIV	376853	.	C	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.3363;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.51;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1750,192,0
chrXIV	377057	.	C	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.52;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1449,159,0
chrXIV	377102	.	C	T	1048	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.05;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1081,120,0
chrXIV	377627	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.36;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1336,147,0
chrXIV	377864	.	T	C	1211	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.92;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1244,141,0
chrXIV	377887	.	G	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.45;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1449,156,0
chrXIV	377912	.	T	C	1396	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.81;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1429,156,0
chrXIV	378863	.	A	G	2130	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.68;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2163,237,0
chrXIV	379436	.	A	T	1261	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.05;FS=0.000;HaplotypeScore=8.7035;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=15.38;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1294,141,0
chrXIV	379700	.	C	T	2349	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.16;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2382,255,0
chrXIV	380458	.	A	T	1493	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=17.36;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1526,165,0
chrXIV	380470	.	A	G	1349	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=16.45;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1382,156,0
chrXIV	380699	.	G	T	2523	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=9.7482;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.02;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2556,288,0
chrXIV	380871	.	C	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.37;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1479,162,0
chrXIV	380883	.	T	C	1279	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=18.27;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1312,150,0
chrXIV	380926	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4557;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=16.03;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1059,120,0
chrXIV	380998	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=10.1026;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=15.66;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1098,120,0
chrXIV	381101	.	G	A	1628	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3809;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;QD=22.61;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1661,183,0
chrXIV	381267	.	C	A	2843	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.8262;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=24.09;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2876,309,0
chrXIV	381889	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.95;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2065,219,0
chrXIV	381942	.	C	T	1476	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.36;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1509,165,0
chrXIV	382139	.	C	T	2471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.9972;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.501;QD=20.59;ReadPosRankSum=0.895;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2504,264,0
chrXIV	382260	.	T	C	1343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=82;Dels=0.00;FS=3.123;HaplotypeScore=10.7437;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.577;QD=16.38;ReadPosRankSum=1.599;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:1,78:82:99:1376,159,0
chrXIV	382312	.	A	T	1908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.485;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.538;QD=21.93;ReadPosRankSum=1.692;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1941,213,0
chrXIV	382331	.	G	A	1806	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=21.76;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1839,198,0
chrXIV	382352	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=18.08;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1588,180,0
chrXIV	382577	.	A	G	1934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=3.156;HaplotypeScore=9.8503;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.237;QD=20.80;ReadPosRankSum=1.694;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,90:93:99:1967,222,0
chrXIV	382693	.	T	A	1336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=75;Dels=0.00;FS=3.030;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.200;QD=17.81;ReadPosRankSum=2.382;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1369,159,0
chrXIV	382763	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.23;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1328,150,0
chrXIV	383402	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.04;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1476,168,0
chrXIV	383575	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.51;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1711,183,0
chrXIV	383709	.	A	T	2170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.4474;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.265;QD=19.37;ReadPosRankSum=1.638;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,110:112:99:2203,246,0
chrXIV	383790	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1801,195,0
chrXIV	384325	.	T	C	2527	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=12.0471;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.38;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2560,297,0
chrXIV	385111	.	A	G	1440	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.18;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1473,162,0
chrXIV	385150	.	T	C	1405	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=20.66;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1438,159,0
chrXIV	385472	.	C	T	888	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.18;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:921,99,0
chrXIV	385521	.	T	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.36;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1272,138,0
chrXIV	385702	.	A	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.76;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1851,207,0
chrXIV	385713	.	G	A	1804	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=20.50;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1837,198,0
chrXIV	385873	.	G	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.02;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1276,141,0
chrXIV	386239	.	C	T	1131	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.50;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1164,129,0
chrXIV	386488	.	C	T	750	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.83;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:90:783,90,0
chrXIV	386641	.	G	A	1083	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=4.508;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.372;QD=22.10;ReadPosRankSum=1.660;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:1116,120,0
chrXIV	386898	.	A	C	1653	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.04;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1686,189,0
chrXIV	387036	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=-0.782;QD=19.71;ReadPosRankSum=1.509;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1255,141,0
chrXIV	387037	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.08;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1278,138,0
chrXIV	387165	.	G	A	2438	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.39;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2471,267,0
chrXIV	387197	.	G	A	2050	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.0108;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=18.30;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2083,231,0
chrXIV	387211	.	T	C	1660	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.91;MQ0=0;QD=17.47;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1693,192,0
chrXIV	387221	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=17.02;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1531,174,0
chrXIV	387361	.	A	G	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;DP=78;Dels=0.00;FS=3.049;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.432;QD=16.92;ReadPosRankSum=1.841;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1353,132,0
chrXIV	387524	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=76;Dels=0.00;FS=12.209;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;MQRankSum=-0.203;QD=18.25;ReadPosRankSum=2.798;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:3,72:76:99:1420,165,0
chrXIV	387540	.	T	C	1676	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.69;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1709,189,0
chrXIV	387577	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.03;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1535,174,0
chrXIV	387817	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=20.48;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1733,189,0
chrXIV	387829	.	G	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.83;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1577,171,0
chrXIV	388136	.	C	T	1796	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.73;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1829,201,0
chrXIV	388579	.	T	C	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=85;Dels=0.00;FS=6.389;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.507;QD=22.19;ReadPosRankSum=2.392;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1919,216,0
chrXIV	388819	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.462;QD=18.43;ReadPosRankSum=1.624;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:1,63:69:99:1305,144,0
chrXIV	388979	.	C	A	1863	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.61;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1896,207,0
chrXIV	389281	.	T	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.06;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1091,120,0
chrXIV	389282	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.788;DP=62;Dels=0.00;FS=6.182;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;MQRankSum=-0.558;QD=17.39;ReadPosRankSum=2.821;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:3,59:62:99:1111,123,0
chrXIV	389323	.	T	C	1568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;MQRankSum=0.171;QD=17.23;ReadPosRankSum=1.694;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1601,183,0
chrXIV	389356	.	C	T	2050	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.13;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2083,225,0
chrXIV	389396	.	T	C	1834	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=20.84;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1867,207,0
chrXIV	389635	.	A	G	2021	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=1.067;QD=20.41;ReadPosRankSum=1.697;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2054,228,0
chrXIV	389671	.	G	A	2072	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.02;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2105,228,0
chrXIV	390089	.	G	T	1779	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.72;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1812,198,0
chrXIV	390137	.	C	T	1840	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.72;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1873,207,0
chrXIV	390377	.	G	A	2165	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.5026;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.79;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2198,240,0
chrXIV	390649	.	C	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.79;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1972,222,0
chrXIV	390845	.	G	C	1839	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.39;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:1872,216,0
chrXIV	391590	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.8695;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=13.56;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:928,105,0
chrXIV	391615	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.44;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1102,120,0
chrXIV	391752	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=3.148;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.812;QD=19.83;ReadPosRankSum=1.678;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1322,147,0
chrXIV	391796	.	G	T	979	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.88;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1012,114,0
chrXIV	391871	.	A	G	1098	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.2196;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=16.89;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1131,129,0
chrXIV	392063	.	A	G	663	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.42;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:696,78,0
chrXIV	392414	.	T	A	712	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.97;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:745,81,0
chrXIV	392609	.	C	G	1149	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.81;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1182,129,0
chrXIV	393703	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.12;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1351,150,0
chrXIV	394063	.	G	T	1938	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2291;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=22.80;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1971,213,0
chrXIV	394167	.	A	G	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.228;DP=100;Dels=0.00;FS=8.711;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-0.455;QD=18.15;ReadPosRankSum=2.401;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:2,98:100:99:1848,204,0
chrXIV	394187	.	T	C	1440	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.897;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.2038;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-0.276;QD=16.36;ReadPosRankSum=2.805;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:3,85:88:99:1473,165,0
chrXIV	394241	.	G	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.94;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1568,174,0
chrXIV	394442	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.53;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1634,186,0
chrXIV	395047	.	C	T	1455	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.73;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1488,159,0
chrXIV	395201	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.20;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1380,150,0
chrXIV	395327	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=20.75;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1610,174,0
chrXIV	395338	.	T	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.81;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1425,165,0
chrXIV	395566	.	G	A	942	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.582;QD=19.62;ReadPosRankSum=1.205;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:1,45:48:99:975,105,0
chrXIV	395734	.	A	G	1618	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.01;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1651,186,0
chrXIV	395854	.	A	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1915;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.85;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1105,123,0
chrXIV	395998	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=3.802;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.203;QD=20.11;ReadPosRankSum=1.684;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1501,165,0
chrXIV	396260	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.31;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1130,123,0
chrXIV	396544	.	C	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=19.16;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1777,192,0
chrXIV	396569	.	T	C	1662	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.77;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1695,186,0
chrXIV	396967	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=20.60;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1310,150,0
chrXIV	397399	.	A	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.0860;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.61;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1327,150,0
chrXIV	397420	.	C	T	1112	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=16.60;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1145,126,0
chrXIV	397432	.	C	T	1247	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=15.59;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1280,144,0
chrXIV	397475	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=17.52;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1627,177,0
chrXIV	397597	.	T	G	1584	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.64;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1617,183,0
chrXIV	397680	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.10;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1580,168,0
chrXIV	397733	.	T	G	1460	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=16.40;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1493,174,0
chrXIV	397752	.	T	C	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;MQRankSum=0.346;QD=17.91;ReadPosRankSum=1.697;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1824,201,0
chrXIV	397790	.	T	C	1820	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=74.0906;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=19.36;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1853,204,0
chrXIV	397986	.	T	C	2296	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;MQRankSum=1.093;QD=22.29;ReadPosRankSum=1.665;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2329,255,0
chrXIV	397996	.	T	G	1957	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=21.27;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1990,231,0
chrXIV	398211	.	A	G	2403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;MQRankSum=1.641;QD=20.90;ReadPosRankSum=1.671;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,113:115:99:2436,264,0
chrXIV	398339	.	C	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.87;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:99:1586,171,0
chrXIV	399956	.	T	G	972	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=18.34;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1005,114,0
chrXIV	400003	.	G	A	648	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=13.79;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:75:681,75,0
chrXIV	400049	.	T	C	751	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=17.47;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:784,90,0
chrXIV	400449	.	T	C	2132	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=23.17;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2165,240,0
chrXIV	400727	.	G	A	1991	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.66;MQ0=0;QD=16.32;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2024,225,0
chrXIV	400773	.	A	G	2054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=154;Dels=0.00;FS=2.950;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;MQRankSum=-2.114;QD=13.34;ReadPosRankSum=2.418;SB=-1.736e+03	GT:AD:DP:GQ:PL	1/1:2,152:154:99:2087,228,0
chrXIV	400777	.	G	A	1965	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=0;QD=12.36;SB=-1.570e+03	GT:AD:DP:GQ:PL	1/1:0,159:159:99:1998,219,0
chrXIV	400788	.	G	T	1952	SnpCluster	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.30;MQ0=0;QD=12.59;SB=-2.033e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:1985,216,0
chrXIV	400794	.	C	T	1975	SnpCluster	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=12.66;SB=-2.001e+03	GT:AD:DP:GQ:PL	1/1:0,156:156:99:2008,213,0
chrXIV	400797	.	T	C	1909	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=163;Dels=0.00;FS=3.257;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;MQRankSum=-1.605;QD=11.71;ReadPosRankSum=1.690;SB=-1.964e+03	GT:AD:DP:GQ:PL	1/1:1,162:163:99:1942,219,0
chrXIV	400813	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.32;MQ0=0;QD=12.21;SB=-1.994e+03	GT:AD:DP:GQ:PL	1/1:0,156:156:99:1937,213,0
chrXIV	400821	.	C	T	1885	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.22;MQ0=0;QD=12.40;SB=-1.790e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:1918,219,0
chrXIV	400849	.	T	C	2314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=164;Dels=0.00;FS=6.005;HaplotypeScore=7.8098;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;MQRankSum=0.417;QD=14.11;ReadPosRankSum=2.798;SB=-1.860e+03	GT:AD:DP:GQ:PL	1/1:3,161:164:99:2347,264,0
chrXIV	400901	.	G	A	2772	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.7413;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=20.09;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2805,315,0
chrXIV	400998	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.057;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=1.159;QD=19.00;ReadPosRankSum=0.019;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:1287,118,0
chrXIV	401015	.	T	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=20.33;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1720,192,0
chrXIV	401240	.	C	T	2777	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=22.04;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2810,303,0
chrXIV	401251	.	A	T	2791	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.47;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2824,309,0
chrXIV	401617	.	A	G	2610	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.89;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2643,297,0
chrXIV	401891	.	C	T	1596	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.57;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1629,180,0
chrXIV	403294	.	T	C	2408	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.94;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2441,273,0
chrXIV	403701	.	C	T	811	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.9807;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.43;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:93:844,93,0
chrXIV	403835	.	C	T	883	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.20;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:916,99,0
chrXIV	404051	.	A	G	1392	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.302;QD=22.10;ReadPosRankSum=1.677;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1425,165,0
chrXIV	404085	.	C	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.93;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1569,171,0
chrXIV	404479	.	C	T	2157	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.01;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2190,240,0
chrXIV	404620	.	C	T	2366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.321;DP=102;Dels=0.00;FS=5.893;HaplotypeScore=8.5054;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;MQRankSum=0.737;QD=23.20;ReadPosRankSum=0.189;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2399,239,0
chrXIV	404663	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=22.97;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1641,180,0
chrXIV	404770	.	C	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=18.06;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1225,135,0
chrXIV	404995	.	A	G	1850	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;QD=18.88;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1883,213,0
chrXIV	405002	.	A	G	1695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.328;DP=84;Dels=0.00;FS=8.717;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;MQRankSum=0.436;QD=20.18;ReadPosRankSum=2.690;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:4,79:84:99:1728,192,0
chrXIV	405028	.	T	A	1138	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=61;Dels=0.00;FS=2.940;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;MQRankSum=0.263;QD=18.66;ReadPosRankSum=2.369;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1171,129,0
chrXIV	405043	.	A	C	1019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=62;Dels=0.00;FS=3.979;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.173;QD=16.44;ReadPosRankSum=1.675;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:1,59:62:99:1052,117,0
chrXIV	405754	.	T	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.69;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1585,174,0
chrXIV	405802	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.2996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.04;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1536,171,0
chrXIV	405847	.	T	C	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=76;Dels=0.00;FS=2.770;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.574;QD=20.28;ReadPosRankSum=2.255;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1574,180,0
chrXIV	405961	.	A	T	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.105;DP=100;Dels=0.00;FS=3.053;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-0.406;QD=16.15;ReadPosRankSum=2.351;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:2,98:100:99:1648,180,0
chrXIV	406074	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.02;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1726,186,0
chrXIV	406133	.	A	G	1961	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.7605;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.55;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1994,219,0
chrXIV	406194	.	T	C	2455	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.463;QD=21.16;ReadPosRankSum=1.702;SB=-1.489e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2488,273,0
chrXIV	406274	.	T	C	2443	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.88;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2476,279,0
chrXIV	406293	.	C	T	2848	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.08;SB=-1.534e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2881,315,0
chrXIV	406337	.	G	A	2894	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.7368;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.79;SB=-1.318e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2927,318,0
chrXIV	406495	.	T	C	2487	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.7761;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.01;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2520,279,0
chrXIV	406753	.	A	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.88;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1543,165,0
chrXIV	407152	.	T	G	961	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:994,111,0
chrXIV	407285	.	A	G	1547	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=10.3869;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.36;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1580,174,0
chrXIV	407734	.	C	T	1221	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=19.38;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1254,141,0
chrXIV	407806	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.60;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1269,141,0
chrXIV	407884	.	C	T	881	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:914,102,0
chrXIV	408124	.	T	C	2317	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.40;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2350,255,0
chrXIV	408338	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.11;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1311,141,0
chrXIV	408529	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=12.0831;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=15.35;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1491,174,0
chrXIV	409114	.	G	A	2056	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=12.7967;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.21;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2089,228,0
chrXIV	409315	.	T	G	1622	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1655,189,0
chrXIV	409420	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.18;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1447,159,0
chrXIV	409585	.	A	G	1388	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.124;QD=18.51;ReadPosRankSum=1.685;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1421,159,0
chrXIV	409622	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1480,171,0
chrXIV	410443	.	A	G	1731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.400;QD=22.19;ReadPosRankSum=1.688;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1764,201,0
chrXIV	410737	.	A	G	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.536;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.110;QD=20.58;ReadPosRankSum=1.644;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1659,189,0
chrXIV	410941	.	A	G	1742	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.8863;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.80;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1775,198,0
chrXIV	411007	.	G	T	1834	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=17.5023;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=17.63;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,99:104:99:1867,210,0
chrXIV	411040	.	G	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.6412;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.12;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1965,219,0
chrXIV	411226	.	A	C	2337	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.15;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2370,273,0
chrXIV	411667	.	T	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.76;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1910,207,0
chrXIV	411928	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=21.47;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1665,183,0
chrXIV	411943	.	G	C	1583	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.11;MQ0=0;QD=19.54;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1616,180,0
chrXIV	412116	.	T	C	3002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=140;Dels=0.00;FS=5.963;HaplotypeScore=9.7093;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;MQRankSum=-0.210;QD=21.44;ReadPosRankSum=2.950;SB=-1.586e+03	GT:AD:DP:GQ:PL	1/1:3,136:140:99:3035,345,0
chrXIV	412258	.	G	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;QD=22.24;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1857,204,0
chrXIV	412260	.	A	G	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.465;QD=21.30;ReadPosRankSum=1.690;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1780,201,0
chrXIV	412273	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.21;MQ0=0;QD=19.54;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1850,201,0
chrXIV	412313	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.47;MQ0=0;QD=15.99;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1648,189,0
chrXIV	412334	.	A	G	1695	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=38.67;MQ0=0;QD=16.62;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1728,195,0
chrXIV	412369	.	A	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.11;MQ0=0;QD=15.45;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1671,189,0
chrXIV	412378	.	T	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.58;MQ0=0;QD=16.02;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1619,177,0
chrXIV	412400	.	C	T	1437	SnpCluster	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.81;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1470,156,0
chrXIV	412403	.	T	C	1297	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=4.159;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.402;QD=13.10;ReadPosRankSum=1.697;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1330,147,0
chrXIV	412406	.	C	T	1354	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=14.25;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1387,147,0
chrXIV	412410	.	G	A	1643	SnpCluster	AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;QD=15.07;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1676,183,0
chrXIV	412417	.	G	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=38.80;MQ0=0;QD=16.28;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1791,195,0
chrXIV	412511	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.02;MQ0=0;QD=15.69;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1398,159,0
chrXIV	412526	.	A	G	1348	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=88;Dels=0.00;FS=8.082;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;MQRankSum=-2.033;QD=15.32;ReadPosRankSum=3.355;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:4,84:88:99:1381,153,0
chrXIV	412555	.	T	A	1125	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=3.274;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.61;MQ0=0;MQRankSum=-1.284;QD=13.24;ReadPosRankSum=1.691;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1158,129,0
chrXIV	412559	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=11.79;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:976,111,0
chrXIV	412581	.	G	A	818	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=49.2507;MLEAC=2;MLEAF=1.00;MQ=27.58;MQ0=0;QD=13.19;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:851,99,0
chrXIV	412587	.	T	A	750	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.46;MQ0=0;QD=14.15;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:783,93,0
chrXIV	412591	.	T	C	731	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=4.102;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;MQRankSum=-1.732;QD=13.29;ReadPosRankSum=1.668;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:93:764,93,0
chrXIV	412609	.	G	T	850	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.63;MQ0=0;QD=15.74;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:883,99,0
chrXIV	412689	.	G	T	1522	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=18.79;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1555,168,0
chrXIV	412736	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=21.05;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1422,156,0
chrXIV	413139	.	C	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.94;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1687,183,0
chrXIV	413265	.	T	C	1239	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.36;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1272,141,0
chrXIV	413359	.	A	G	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.717;QD=20.07;ReadPosRankSum=1.673;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1217,138,0
chrXIV	413392	.	T	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.70;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1215,135,0
chrXIV	413554	.	T	C	1454	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=20.19;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1487,171,0
chrXIV	413606	.	A	T	1528	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=20.11;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1561,174,0
chrXIV	413607	.	T	A	1504	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.79;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1537,174,0
chrXIV	413631	.	G	A	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=5.351;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;MQRankSum=1.444;QD=22.44;ReadPosRankSum=1.636;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1649,180,0
chrXIV	413686	.	G	T	698	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=22.52;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:731,81,0
chrXIV	414010	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.36;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1427,162,0
chrXIV	414025	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.52;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1218,132,0
chrXIV	414277	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.92;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1480,162,0
chrXIV	414799	.	C	T	1815	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=23.57;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1848,201,0
chrXIV	414838	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.9683;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.94;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1436,156,0
chrXIV	414871	.	C	T	1459	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.6075;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.78;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1492,159,0
chrXIV	415276	.	A	G	1142	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.55;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1175,129,0
chrXIV	415611	.	A	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=19.42;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,65:69:99:1373,156,0
chrXIV	415654	.	A	T	1897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.580;QD=20.85;ReadPosRankSum=1.694;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1930,204,0
chrXIV	415788	.	A	G	1030	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;QD=19.07;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1063,117,0
chrXIV	415793	.	A	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;QD=18.74;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1101,120,0
chrXIV	415844	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.50;MQ0=0;QD=13.54;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:886,99,0
chrXIV	415849	.	G	A	919	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.54;MQ0=0;QD=13.51;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:952,102,0
chrXIV	415877	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=15.38;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1325,147,0
chrXIV	416053	.	A	G	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.481;QD=22.32;ReadPosRankSum=1.684;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1640,186,0
chrXIV	416164	.	T	C	1015	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=20.71;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1048,117,0
chrXIV	416179	.	T	C	789	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=17.53;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:822,96,0
chrXIV	416620	.	T	G	1638	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.47;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1671,189,0
chrXIV	416832	.	G	T	2312	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.12;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2345,255,0
chrXIV	416991	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.72;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1445,162,0
chrXIV	417156	.	T	A	2121	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.33;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2154,228,0
chrXIV	417356	.	A	G	1510	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=18.41;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1543,174,0
chrXIV	417400	.	T	A	2034	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=20.76;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2067,225,0
chrXIV	417421	.	C	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=20.18;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1950,213,0
chrXIV	417439	.	G	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=20.83;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1970,216,0
chrXIV	417659	.	G	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9342;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.14;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1491,168,0
chrXIV	417758	.	C	T	2329	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.32;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2362,255,0
chrXIV	418066	.	A	G	968	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1612;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.60;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1001,114,0
chrXIV	418291	.	A	G	1009	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=16.82;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1042,117,0
chrXIV	418300	.	T	C	902	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=2.999;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=46.28;MQ0=0;MQRankSum=-0.817;QD=16.11;ReadPosRankSum=2.274;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:935,105,0
chrXIV	418306	.	G	A	883	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5121;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=16.05;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:916,102,0
chrXIV	418324	.	A	G	711	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=13.42;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:744,84,0
chrXIV	418408	.	T	C	975	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.51;MQ0=0;QD=20.31;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1008,111,0
chrXIV	418437	.	G	A	857	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=20.90;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:890,99,0
chrXIV	418511	.	T	C	1830	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.80;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1863,204,0
chrXIV	418565	.	T	C	1959	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=21.29;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1992,228,0
chrXIV	418594	.	A	G	1233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=2.962;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.805;QD=17.87;ReadPosRankSum=2.092;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1266,141,0
chrXIV	418612	.	C	T	699	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=15.53;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:78:732,78,0
chrXIV	418687	.	T	C	547	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.92;MQ0=0;QD=20.26;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:63:580,63,0
chrXIV	418723	.	T	A	429	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.24;MQ0=0;QD=17.16;SB=-6.587e-03	GT:AD:DP:GQ:PL	1/1:0,25:25:51:462,51,0
chrXIV	418735	.	T	C	441	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=18.37;SB=-6.553e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:54:474,54,0
chrXIV	418738	.	G	A	444	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=18.50;SB=-6.584e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:51:477,51,0
chrXIV	418741	.	C	T	337	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=14.65;SB=-7.050e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:42:370,42,0
chrXIV	418746	.	G	A	356	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.80;SB=-7.059e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:42:389,42,0
chrXIV	418767	.	G	A	410	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.50;MQ0=0;QD=17.08;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:48:443,48,0
chrXIV	418776	.	G	A	431	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.24;MQ0=0;QD=16.58;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:51:464,51,0
chrXIV	418804	.	G	A	607	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.22;MQ0=0;QD=17.85;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:69:640,69,0
chrXIV	418811	.	T	C	610	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=17.43;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,35:35:75:643,75,0
chrXIV	418818	.	A	G	679	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.6232;MLEAC=2;MLEAF=1.00;MQ=44.41;MQ0=0;QD=17.87;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:78:712,78,0
chrXIV	418866	.	A	T	1067	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=18.08;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1100,120,0
chrXIV	418871	.	A	C	1024	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=17.36;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1057,120,0
chrXIV	419029	.	T	C	776	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=20.97;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:93:809,93,0
chrXIV	419038	.	C	T	726	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=22.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:84:759,84,0
chrXIV	419074	.	A	G	424	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=18.43;SB=-6.584e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:51:457,51,0
chrXIV	419161	.	C	T	484	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.00;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:57:517,57,0
chrXIV	419170	.	T	C	486	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.69;SB=-4.701e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:60:519,60,0
chrXIV	419205	.	G	A	728	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=20.22;SB=-1.270e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:84:761,84,0
chrXIV	419323	.	G	A	969	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.78;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1002,111,0
chrXIV	419479	.	G	A	1588	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=20.89;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1621,183,0
chrXIV	420029	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.68;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1273,135,0
chrXIV	420063	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.35;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1357,156,0
chrXIV	420094	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5433;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.05;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1336,147,0
chrXIV	420385	.	T	A	1111	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=64;Dels=0.00;FS=3.153;HaplotypeScore=6.9086;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.559;QD=17.36;ReadPosRankSum=1.676;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1144,126,0
chrXIV	420437	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.942;QD=19.47;ReadPosRankSum=1.672;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1143,129,0
chrXIV	420512	.	A	T	1163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.866;QD=16.15;ReadPosRankSum=1.684;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1196,132,0
chrXIV	420541	.	G	A	1175	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=15.67;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1208,135,0
chrXIV	420944	.	T	C	2092	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.9200;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.24;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2125,237,0
chrXIV	421128	.	T	A	888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=2.973;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.242;QD=19.30;ReadPosRankSum=2.343;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:99:921,99,0
chrXIV	421216	.	T	A	931	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:964,108,0
chrXIV	421256	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1380,150,0
chrXIV	421448	.	C	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.55;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1225,135,0
chrXIV	421490	.	T	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.674;QD=22.18;ReadPosRankSum=1.674;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1386,153,0
chrXIV	421766	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.86;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1493,165,0
chrXIV	421892	.	A	G	1818	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1851,204,0
chrXIV	421926	.	T	C	1617	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.48;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1650,186,0
chrXIV	422369	.	G	A	824	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=16.48;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:857,96,0
chrXIV	422402	.	G	A	1178	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.70;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1211,135,0
chrXIV	422459	.	T	C	1602	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.54;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1635,186,0
chrXIV	422665	.	T	C	942	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.12;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:975,108,0
chrXIV	422755	.	A	T	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.405;DP=53;Dels=0.00;FS=3.625;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.536;QD=21.81;ReadPosRankSum=1.144;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1189,129,0
chrXIV	422988	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=1.540;QD=20.80;ReadPosRankSum=1.668;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1156,129,0
chrXIV	423063	.	C	T	874	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.49;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:907,99,0
chrXIV	423311	.	A	G	960	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.732;QD=20.87;ReadPosRankSum=1.657;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:993,111,0
chrXIV	423792	.	C	T	1522	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.42;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1555,171,0
chrXIV	423923	.	A	C	1607	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.36;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1640,177,0
chrXIV	424064	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=3.590;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;MQRankSum=0.758;QD=20.06;ReadPosRankSum=-0.704;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1357,150,0
chrXIV	424256	.	A	G	1316	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.89;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1349,156,0
chrXIV	424396	.	T	G	2018	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.67;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2051,234,0
chrXIV	424631	.	C	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.59;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1577,180,0
chrXIV	424701	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=5.416;HaplotypeScore=8.0027;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;MQRankSum=0.299;QD=19.55;ReadPosRankSum=1.692;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1734,192,0
chrXIV	424763	.	A	G	2531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.285;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=8.6891;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.297;QD=15.82;ReadPosRankSum=1.994;SB=-1.746e+03	GT:AD:DP:GQ:PL	1/1:3,156:160:99:2564,285,0
chrXIV	424764	.	T	A	2631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.319;DP=163;Dels=0.00;FS=14.793;HaplotypeScore=6.9436;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;MQRankSum=0.049;QD=16.14;ReadPosRankSum=2.747;SB=-1.919e+03	GT:AD:DP:GQ:PL	1/1:4,159:163:99:2664,282,0
chrXIV	424804	.	T	C	3452.01	PASS	AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=12.7395;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.18;SB=-1.847e+03	GT:AD:DP:GQ:PL	1/1:0,178:180:99:3452,387,0
chrXIV	424865	.	G	A	2500	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.12;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2533,273,0
chrXIV	424895	.	T	C	2003	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.02;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2036,228,0
chrXIV	425075	.	C	T	1687	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.08;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1720,183,0
chrXIV	425369	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.73;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1592,177,0
chrXIV	425456	.	A	G	1191	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.89;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1224,135,0
chrXIV	425696	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.643;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=1.267;QD=17.68;ReadPosRankSum=1.577;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1235,138,0
chrXIV	425816	.	G	A	1827	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.56;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1860,204,0
chrXIV	425903	.	G	C	1051	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;QD=16.68;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1084,126,0
chrXIV	425915	.	A	G	884	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=16.07;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:917,105,0
chrXIV	425924	.	G	A	896	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.99;MQ0=0;QD=15.45;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:929,102,0
chrXIV	425942	.	G	A	819	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=14.89;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:852,93,0
chrXIV	426071	.	A	T	1277	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.3873;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=2;QD=20.93;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1310,144,0
chrXIV	426089	.	G	A	1255	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.24;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1288,141,0
chrXIV	426254	.	A	G	1073	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=45.34;MQ0=0;MQRankSum=-0.153;QD=15.78;ReadPosRankSum=1.681;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1106,126,0
chrXIV	426263	.	A	T	923	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=17.09;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:956,102,0
chrXIV	426281	.	T	G	407	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=32.92;MQ0=1;QD=9.47;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:51:440,51,0
chrXIV	426299	.	A	G	96.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=39;Dels=0.00;FS=8.023;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=26.88;MQ0=2;MQRankSum=-1.981;QD=2.47;ReadPosRankSum=2.317;SB=-1.042e+02	GT:AD:DP:GQ:PL	1/1:2,37:39:15:129,15,0
chrXIV	426306	.	T	C	37.97	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=2;QD=1.00;SB=-9.895e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:9:70,9,0
chrXIV	426317	.	T	A	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.01;MQ0=2;QD=0.53;SB=-1.287e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:6:52,6,0
chrXIV	426320	.	T	C	43.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.85;MQ0=2;MQRankSum=-1.641;QD=1.10;ReadPosRankSum=1.641;SB=-1.530e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:9:76,9,0
chrXIV	426332	.	C	T	74.51	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=2;QD=1.69;SB=-2.405e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:12:107,12,0
chrXIV	426338	.	C	T	82.51	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.09;MQ0=2;QD=1.92;SB=-2.775e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:12:115,12,0
chrXIV	426629	.	A	G	465	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.52;MQ0=0;QD=12.24;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:57:498,57,0
chrXIV	426647	.	G	A	396	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=12.37;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:48:429,48,0
chrXIV	426745	.	C	G	664	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=15.44;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:81:697,81,0
chrXIV	426977	.	C	A	337	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;QD=17.74;SB=-9.501e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:42:370,42,0
chrXIV	426994	.	C	A	273	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=16.06;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:1,16:17:33:306,33,0
chrXIV	427020	.	A	T	12.99	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.159;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.579;QD=1.00;ReadPosRankSum=-1.738;SB=1.37	GT:AD:DP:GQ:PL	1/1:1,12:13:6:44,6,0
chrXIV	427026	.	C	T	197.01	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.9664;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=10.37;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:0,19:19:27:230,27,0
chrXIV	427089	.	A	T	871	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.24;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:96:904,96,0
chrXIV	427278	.	A	G	413	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=14.75;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:51:446,51,0
chrXIV	427279	.	A	G	429	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=15.32;SB=-1.270e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:51:462,51,0
chrXIV	427333	.	A	G	680	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=17.89;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:81:713,81,0
chrXIV	427388	.	C	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.0635;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.81;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1676,180,0
chrXIV	427451	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-0.791;QD=16.85;ReadPosRankSum=1.604;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1398,162,0
chrXIV	427528	.	C	G	1254	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.66;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1287,147,0
chrXIV	427601	.	T	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=22.66;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1574,177,0
chrXIV	427654	.	C	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.93;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1913,207,0
chrXIV	427947	.	C	G	1533	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9612;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.29;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1566,174,0
chrXIV	428064	.	T	C	1865	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.0898;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=18.65;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1898,219,0
chrXIV	428076	.	T	C	1705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5769;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=1.323;QD=18.14;ReadPosRankSum=2.319;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1738,198,0
chrXIV	428130	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=3.628;HaplotypeScore=5.5952;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.023;QD=15.58;ReadPosRankSum=-0.689;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1342,150,0
chrXIV	428450	.	T	G	1659	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.23;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1692,189,0
chrXIV	428493	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=89;Dels=0.00;FS=3.317;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.260;QD=17.01;ReadPosRankSum=1.693;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1547,174,0
chrXIV	428582	.	C	G	1651	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=12.6309;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=19.20;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1684,189,0
chrXIV	428649	.	C	T	1384	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=18.96;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1417,153,0
chrXIV	428659	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=16.49;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1237,135,0
chrXIV	428693	.	C	T	1008	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=14.20;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:99:1041,117,0
chrXIV	428788	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.72;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1380,156,0
chrXIV	428861	.	T	C	1456	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.51;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1489,165,0
chrXIV	428883	.	T	C	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=13.335;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.149;QD=18.75;ReadPosRankSum=2.396;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1739,192,0
chrXIV	428948	.	G	A	1957	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=17.02;SB=-1.324e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:1990,216,0
chrXIV	428970	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=14.31;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1478,165,0
chrXIV	428978	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=93;Dels=0.00;FS=6.068;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;MQRankSum=0.317;QD=15.94;ReadPosRankSum=1.658;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1515,168,0
chrXIV	429024	.	T	C	761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.90;MQ0=0;MQRankSum=-1.804;QD=11.36;ReadPosRankSum=2.865;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:3,64:67:90:794,90,0
chrXIV	429042	.	T	C	728	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=14.56;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:84:761,84,0
chrXIV	429120	.	T	C	914	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.87;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:947,105,0
chrXIV	429156	.	T	C	1348	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.47;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1381,156,0
chrXIV	429239	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.81;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1218,129,0
chrXIV	429408	.	C	T	1300	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.9121;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=0.734;QD=21.67;ReadPosRankSum=-0.264;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1333,147,0
chrXIV	429675	.	G	A	415	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-6.588e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:48:448,48,0
chrXIV	429773	.	T	G	247	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=12.35;SB=-1.516e-02	GT:AD:DP:GQ:PL	1/1:0,19:20:30:280,30,0
chrXIV	429959	.	T	A	1392	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.53;MQ0=0;MQRankSum=0.186;QD=24.86;ReadPosRankSum=1.670;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1425,156,0
chrXIV	430032	.	T	C	1370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=0.472;QD=20.76;ReadPosRankSum=1.575;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1403,159,0
chrXIV	430147	.	A	G	835	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.88;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:868,99,0
chrXIV	430152	.	C	T	848	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.19;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:881,99,0
chrXIV	430248	.	G	A	1198	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.02;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1231,138,0
chrXIV	430338	.	T	C	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.00;FS=7.085;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.791;QD=18.35;ReadPosRankSum=1.694;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:1,91:94:99:1758,204,0
chrXIV	430407	.	C	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.95;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1113,120,0
chrXIV	430495	.	A	G	1411	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=78;Dels=0.00;FS=7.549;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=-0.364;QD=18.09;ReadPosRankSum=2.387;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1444,168,0
chrXIV	430923	.	T	A	1655	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.767;QD=20.95;ReadPosRankSum=1.557;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1688,189,0
chrXIV	431004	.	G	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=23.27;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1522,162,0
chrXIV	431058	.	A	G	874	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=15.33;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:907,102,0
chrXIV	431063	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=14.60;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:865,99,0
chrXIV	431072	.	A	G	906	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=16.47;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:939,102,0
chrXIV	431301	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.42;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1832,207,0
chrXIV	431379	.	A	G	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.552;QD=19.91;ReadPosRankSum=1.642;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1566,177,0
chrXIV	431605	.	A	G	1793	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.70;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1826,204,0
chrXIV	431721	.	G	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3708;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=18.74;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1701,186,0
chrXIV	432378	.	G	T	2129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;DP=99;Dels=0.00;FS=3.100;HaplotypeScore=4.3878;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=1.273;QD=21.51;ReadPosRankSum=1.591;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,97:99:99:2162,243,0
chrXIV	432400	.	A	T	2152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.680;HaplotypeScore=4.2332;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.774;QD=22.89;ReadPosRankSum=1.658;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2185,237,0
chrXIV	432822	.	T	C	1574	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.86;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1607,177,0
chrXIV	433148	.	G	A	2649	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.03;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2682,291,0
chrXIV	433271	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5165;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.37;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1657,174,0
chrXIV	434873	.	T	C	1946	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.70;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1979,225,0
chrXIV	435082	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.8130;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.64;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1354,147,0
chrXIV	435337	.	T	C	1570	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.75;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1603,180,0
chrXIV	435509	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.96;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1680,180,0
chrXIV	435604	.	A	G	1027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.3206;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.256;QD=16.56;ReadPosRankSum=1.675;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1060,117,0
chrXIV	435676	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.502;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.619;QD=20.79;ReadPosRankSum=1.670;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1197,129,0
chrXIV	435739	.	A	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.03;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1327,150,0
chrXIV	436207	.	T	G	838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.2841;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.269;QD=18.62;ReadPosRankSum=1.655;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:871,99,0
chrXIV	436645	.	G	A	1380	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.56;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1413,159,0
chrXIV	437581	.	G	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=19.48;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1377,147,0
chrXIV	437599	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=16.28;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:961,108,0
chrXIV	438280	.	C	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.13;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1744,195,0
chrXIV	438374	.	T	C	2550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=4.410;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=0.095;QD=20.08;ReadPosRankSum=1.705;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:1,126:127:99:2583,294,0
chrXIV	439160	.	C	T	2325	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=14.9302;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2358,258,0
chrXIV	439452	.	A	G	2386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.408;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=10.8307;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;MQRankSum=-0.486;QD=19.88;ReadPosRankSum=2.408;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:2,118:120:99:2419,279,0
chrXIV	439712	.	C	T	902	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.41;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:935,99,0
chrXIV	439783	.	G	A	2141	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.01;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2174,237,0
chrXIV	439943	.	G	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.29;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1364,153,0
chrXIV	439991	.	C	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=15.07;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1344,153,0
chrXIV	441069	.	T	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.12;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1143,129,0
chrXIV	441164	.	T	C	793	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=15.55;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:826,93,0
chrXIV	441225	.	C	T	1521	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=16.90;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1554,174,0
chrXIV	441408	.	A	G	1020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=5.948;HaplotypeScore=3.6376;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;MQRankSum=-0.440;QD=17.29;ReadPosRankSum=1.615;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1053,120,0
chrXIV	441429	.	A	G	835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=4.150;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;MQRankSum=0.333;QD=15.75;ReadPosRankSum=1.532;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:868,99,0
chrXIV	441474	.	C	T	919	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.1454;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=16.41;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:952,105,0
chrXIV	441915	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.37;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1130,126,0
chrXIV	442227	.	C	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.00;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1661,183,0
chrXIV	442390	.	C	A	1092	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.2206;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=20.60;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1125,120,0
chrXIV	442648	.	T	A	666	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=20.18;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,31:33:75:699,75,0
chrXIV	442653	.	A	G	653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;MQRankSum=0.368;QD=19.79;ReadPosRankSum=1.628;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:1,32:33:78:686,78,0
chrXIV	442660	.	G	A	680	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=21.94;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:78:713,78,0
chrXIV	442716	.	C	T	337	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=10.87;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:42:370,42,0
chrXIV	442805	.	T	C	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=6.60;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,3:3:6:51,6,0
chrXIV	442868	.	T	C	460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=45.79;MQ0=0;MQRankSum=-0.846;QD=10.70;ReadPosRankSum=1.652;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:1,42:43:57:493,57,0
chrXIV	442949	.	G	A	852	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=21.30;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:885,102,0
chrXIV	443074	.	T	C	502	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=5;QD=18.59;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:3,24:27:60:535,60,0
chrXIV	443131	.	C	A	100.26	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.76;MQ0=0;QD=2.33;SB=-1.303e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:15:133,15,0
chrXIV	443160	.	G	A	1276	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=18.23;SB=-2.030e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1309,144,0
chrXIV	443191	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=16.92;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1285,144,0
chrXIV	443303	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.21;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1362,153,0
chrXIV	443882	.	T	C	952	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.96;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:985,111,0
chrXIV	443895	.	A	C	934	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.4709;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=17.62;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:967,111,0
chrXIV	444424	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1365,150,0
chrXIV	444614	.	A	C	888	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.65;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:921,102,0
chrXIV	444709	.	C	T	714	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.31;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:747,84,0
chrXIV	445056	.	G	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.58;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1384,162,0
chrXIV	445158	.	C	T	1985	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.89;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2018,222,0
chrXIV	445748	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.23;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1773,195,0
chrXIV	445986	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=20.94;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2106,234,0
chrXIV	446017	.	G	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=20.25;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1795,195,0
chrXIV	446044	.	A	G	1773	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.15;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1806,204,0
chrXIV	446337	.	G	A	1180	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=15.95;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1213,135,0
chrXIV	446677	.	G	C	1467	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.34;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1500,171,0
chrXIV	446682	.	T	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.28;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1477,165,0
chrXIV	446766	.	T	A	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.158;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-1.213;QD=20.15;ReadPosRankSum=1.675;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1262,138,0
chrXIV	447382	.	G	T	2047	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=18.28;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2080,222,0
chrXIV	447433	.	A	G	1823	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.4141;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.382;QD=18.41;ReadPosRankSum=1.627;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1856,210,0
chrXIV	448393	.	C	A	1565	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.36;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1598,174,0
chrXIV	448606	.	T	C	539	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=14.97;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:66:572,66,0
chrXIV	448975	.	C	G	1697	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.57;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1730,201,0
chrXIV	449005	.	C	T	1778	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.51;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1811,201,0
chrXIV	449371	.	C	T	2004	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.22;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2037,219,0
chrXIV	449443	.	T	C	1700	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-0.603;QD=19.10;ReadPosRankSum=1.654;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1733,198,0
chrXIV	449451	.	T	A	1908	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.74;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1941,207,0
chrXIV	449452	.	T	A	1878	SnpCluster	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=21.10;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1911,204,0
chrXIV	449521	.	G	A	2306	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=21.16;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2339,252,0
chrXIV	449542	.	T	A	1971	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.77;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2004,219,0
chrXIV	449547	.	T	A	1948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=49.91;MQ0=0;MQRankSum=-1.144;QD=18.21;ReadPosRankSum=1.667;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:1981,213,0
chrXIV	449640	.	A	G	1267	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1300,147,0
chrXIV	449850	.	G	A	2285	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.5940;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.18;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2318,252,0
chrXIV	449873	.	T	C	1870	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=21.01;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1903,216,0
chrXIV	450151	.	C	G	1513	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5655;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.65;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1546,171,0
chrXIV	450291	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=71;Dels=0.01;FS=3.266;HaplotypeScore=5.1145;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.683;QD=20.61;ReadPosRankSum=1.683;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1496,165,0
chrXIV	450320	.	A	C	1159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=3.602;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-1.039;QD=21.07;ReadPosRankSum=1.669;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1192,135,0
chrXIV	450515	.	G	A	1649	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=24.61;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1682,180,0
chrXIV	450550	.	C	G	1728	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.67;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1761,195,0
chrXIV	450577	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.38;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1487,159,0
chrXIV	450844	.	G	A	1217	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.28;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1250,135,0
chrXIV	450995	.	C	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.8724;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.01;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1618,171,0
chrXIV	451256	.	T	G	1245	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.0645;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.45;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1278,144,0
chrXIV	451380	.	T	C	1332	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.7013;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=17.76;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1365,150,0
chrXIV	451746	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.64;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:962,105,0
chrXIV	452274	.	G	A	1987	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.08;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2020,219,0
chrXIV	452401	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.10;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1278,144,0
chrXIV	452788	.	G	A	2031	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.3445;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.62;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2064,216,0
chrXIV	453313	.	T	C	1955	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=86;Dels=0.00;FS=2.554;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.536;QD=22.73;ReadPosRankSum=2.798;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:3,82:86:99:1988,222,0
chrXIV	453766	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=17.93;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1665,189,0
chrXIV	453910	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.54;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1676,192,0
chrXIV	453937	.	C	T	2248	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=22.71;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2281,246,0
chrXIV	454378	.	G	A	2606	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.72;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2639,282,0
chrXIV	454776	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1301;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.99;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1748,189,0
chrXIV	455062	.	T	C	1490	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9835;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.74;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1523,174,0
chrXIV	455254	.	T	G	1706	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.75;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1739,201,0
chrXIV	455781	.	G	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.6469;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.02;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1795,192,0
chrXIV	455941	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;MQRankSum=-0.815;QD=15.51;ReadPosRankSum=1.681;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1103,126,0
chrXIV	455944	.	T	C	1090	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=16.03;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1123,126,0
chrXIV	456086	.	A	G	1699	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=19.99;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1732,192,0
chrXIV	456876	.	G	A	2814	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.51;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2847,309,0
chrXIV	456993	.	A	G	1683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=3.623;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=22.14;ReadPosRankSum=1.595;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1716,198,0
chrXIV	457180	.	G	C	4733.01	PASS	AC=2;AF=1.00;AN=2;DP=194;Dels=0.01;FS=0.000;HaplotypeScore=18.9971;MLEAC=2;MLEAF=1.00;MQ=60.68;MQ0=0;QD=24.40;SB=-2.072e+03	GT:AD:DP:GQ:PL	1/1:0,192:192:99:4733,525,0
chrXIV	457263	.	T	C	2098	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.85;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2131,243,0
chrXIV	457485	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.30;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2078,225,0
chrXIV	458177	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.85;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1800,204,0
chrXIV	458514	.	G	A	1027	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=16.84;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1060,123,0
chrXIV	458521	.	A	G	1066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.213;QD=17.77;ReadPosRankSum=1.675;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1099,123,0
chrXIV	459152	.	A	G	611	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.1637;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=13.28;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:72:644,72,0
chrXIV	459959	.	T	C	707	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.57;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:84:740,84,0
chrXIV	460392	.	G	A	1409	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.30;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1442,159,0
chrXIV	461091	.	C	G	2081	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,91:95:99:2114,237,0
chrXIV	461267	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.73;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1028,111,0
chrXIV	461618	.	T	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1449,156,0
chrXIV	461705	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1249,141,0
chrXIV	461930	.	C	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.06;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1444,162,0
chrXIV	461994	.	A	T	1611	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.8826;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.267;QD=19.18;ReadPosRankSum=1.648;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1644,177,0
chrXIV	462443	.	C	G	1336	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=19.09;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1369,156,0
chrXIV	462447	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=4.594;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.347;QD=18.44;ReadPosRankSum=1.684;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1361,153,0
chrXIV	462572	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.11;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1466,165,0
chrXIV	463310	.	A	G	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=2.999;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.646;QD=19.51;ReadPosRankSum=2.300;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1633,186,0
chrXIV	463399	.	T	A	1121	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.76;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1154,129,0
chrXIV	463775	.	C	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=9.5855;MLEAC=2;MLEAF=1.00;MQ=60.33;MQ0=0;QD=24.74;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1641,177,0
chrXIV	463992	.	C	G	727	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.65;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:87:760,87,0
chrXIV	464117	.	A	G	1505	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1538,174,0
chrXIV	464849	.	C	T	2182	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.04;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2215,249,0
chrXIV	464864	.	G	A	2190	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=21.26;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2223,240,0
chrXIV	465005	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1838,198,0
chrXIV	465982	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.01;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1434,159,0
chrXIV	466168	.	T	C	1397	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.83;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1430,159,0
chrXIV	466221	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.89;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1370,150,0
chrXIV	466265	.	A	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.95;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1625,174,0
chrXIV	466279	.	A	C	1565	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.32;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1598,180,0
chrXIV	466312	.	T	C	1674	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.24;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,83:87:99:1707,189,0
chrXIV	466480	.	T	A	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=90;Dels=0.00;FS=6.267;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.616;QD=17.96;ReadPosRankSum=2.368;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:1649,186,0
chrXIV	466584	.	G	A	1939	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=20.63;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1972,213,0
chrXIV	466623	.	C	T	2095	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.38;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2128,231,0
chrXIV	466878	.	A	G	2845	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=21.72;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2878,324,0
chrXIV	467219	.	A	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.90;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1810,201,0
chrXIV	467343	.	G	A	2211	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.1677;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2244,243,0
chrXIV	467446	.	T	A	1287	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.50;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1320,153,0
chrXIV	467514	.	G	A	679	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=15.09;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:712,81,0
chrXIV	467673	.	T	C	2019	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.79;SB=-1.149e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2052,234,0
chrXIV	468108	.	A	G	1985	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.30;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2018,228,0
chrXIV	468438	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.615;QD=17.57;ReadPosRankSum=1.615;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1087,120,0
chrXIV	468488	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.447;QD=18.40;ReadPosRankSum=1.569;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1597,177,0
chrXIV	468702	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=17.92;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1216,138,0
chrXIV	468720	.	C	T	1256	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.03;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1289,144,0
chrXIV	468840	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.95;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1960,219,0
chrXIV	468861	.	A	G	1901	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.60;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,94:97:99:1934,216,0
chrXIV	468912	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.7575;MLEAC=2;MLEAF=1.00;MQ=55.26;MQ0=0;QD=20.52;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2106,228,0
chrXIV	468930	.	C	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=16.41;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1543,174,0
chrXIV	468958	.	A	C	1233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=7.191;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.345;QD=18.13;ReadPosRankSum=2.377;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1266,144,0
chrXIV	469131	.	T	C	1427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=71;Dels=0.00;FS=6.727;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.400;QD=20.10;ReadPosRankSum=2.381;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1460,159,0
chrXIV	469170	.	T	C	1778	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.98;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1811,210,0
chrXIV	469964	.	T	C	828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-0.380;QD=19.71;ReadPosRankSum=1.564;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:861,99,0
chrXIV	470301	.	C	T	1223	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.11;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1256,135,0
chrXIV	470587	.	C	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.76;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1777,192,0
chrXIV	471448	.	T	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.80;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1406,162,0
chrXIV	471884	.	A	G	689	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=16.40;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:722,84,0
chrXIV	472054	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2912;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.98;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1088,120,0
chrXIV	472094	.	A	G	720	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.46;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:87:753,87,0
chrXIV	472643	.	A	C	950	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=1;QD=13.97;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:983,108,0
chrXIV	472862	.	C	T	1977	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.5934;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.21;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2010,219,0
chrXIV	472898	.	G	A	2584	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.85;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2617,276,0
chrXIV	473146	.	G	C	3068	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=8.8260;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.92;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,152:154:99:3101,363,0
chrXIV	473204	.	G	A	4361.01	PASS	AC=2;AF=1.00;AN=2;DP=191;Dels=0.01;FS=0.000;HaplotypeScore=14.6255;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.83;SB=-2.045e+03	GT:AD:DP:GQ:PL	1/1:0,190:190:99:4361,474,0
chrXIV	473234	.	A	C	2520	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=125;Dels=0.00;FS=10.970;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.431;QD=20.16;ReadPosRankSum=2.943;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:3,121:125:99:2553,294,0
chrXIV	473303	.	T	C	1664	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.80;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1697,186,0
chrXIV	473319	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=16.26;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1301,144,0
chrXIV	473321	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=16.86;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1314,150,0
chrXIV	473357	.	A	G	1149	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.65;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1182,132,0
chrXIV	473375	.	G	A	902	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=14.09;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:935,102,0
chrXIV	473389	.	G	C	1044	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=15.13;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1077,120,0
chrXIV	473603	.	C	T	1943	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.45;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1976,216,0
chrXIV	473648	.	T	C	1908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.544;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.8201;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-0.678;QD=20.74;ReadPosRankSum=1.694;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1941,225,0
chrXIV	473723	.	G	C	1233	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=20.90;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1266,141,0
chrXIV	473855	.	C	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.94;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1157,126,0
chrXIV	473948	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=4.658;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.048;QD=20.19;ReadPosRankSum=1.641;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1588,180,0
chrXIV	474101	.	T	C	983	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.069;QD=20.91;ReadPosRankSum=1.659;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1016,114,0
chrXIV	474209	.	T	C	975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=1.133;QD=18.75;ReadPosRankSum=1.666;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1008,111,0
chrXIV	474245	.	G	A	863	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=16.28;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:896,99,0
chrXIV	474329	.	T	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=24.32;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1322,147,0
chrXIV	474407	.	C	T	984	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.57;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1017,117,0
chrXIV	474540	.	T	G	1059	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.61;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1092,126,0
chrXIV	474581	.	C	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=18.31;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1113,120,0
chrXIV	474589	.	C	G	859	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;QD=15.34;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:892,99,0
chrXIV	474755	.	T	C	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.6455;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.462;QD=18.32;ReadPosRankSum=1.617;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,59:62:99:1169,132,0
chrXIV	474813	.	G	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.28;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1267,138,0
chrXIV	475172	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=4.082;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.299;QD=20.08;ReadPosRankSum=1.624;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1318,150,0
chrXIV	475211	.	A	G	1682	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3192;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.51;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1715,189,0
chrXIV	475712	.	T	G	2566	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.503;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.1368;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.752;QD=24.21;ReadPosRankSum=-0.261;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2599,278,0
chrXIV	475754	.	G	A	2750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=11.5547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.726;QD=21.65;ReadPosRankSum=-0.223;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,123:127:99:2783,295,0
chrXIV	476497	.	G	A	1953	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.93;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1986,219,0
chrXIV	476599	.	A	C	994	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=19.49;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1027,114,0
chrXIV	476731	.	A	G	995	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=17.16;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1028,114,0
chrXIV	477193	.	A	G	750	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.73;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:90:783,90,0
chrXIV	477237	.	T	A	973	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.70;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1006,108,0
chrXIV	477388	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.989;QD=20.60;ReadPosRankSum=2.389;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1702,186,0
chrXIV	477496	.	C	T	1505	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.13;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1538,171,0
chrXIV	477505	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4027;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=16.70;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1386,153,0
chrXIV	477705	.	C	T	1710	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=20.60;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1743,189,0
chrXIV	477742	.	G	A	1848	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.54;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1881,210,0
chrXIV	477931	.	C	A	1084	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.0468;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=19.71;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1117,120,0
chrXIV	478041	.	T	C	2141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=99;Dels=0.00;FS=3.936;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-0.332;QD=21.63;ReadPosRankSum=1.697;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2174,237,0
chrXIV	478303	.	G	A	961	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.88;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:994,108,0
chrXIV	479345	.	T	C	666	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=7.3107;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=13.87;SB=-7.801e+01	GT:AD:DP:GQ:PL	1/1:0,47:48:78:699,78,0
chrXIV	479609	.	T	C	813	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=42.31;MQ0=0;QD=22.58;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:93:846,93,0
chrXIV	479709	.	C	T	1470	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=24.92;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1503,162,0
chrXIV	479944	.	A	G	189.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;DP=121;Dels=0.00;FS=11.820;HaplotypeScore=17.8310;MLEAC=1;MLEAF=0.500;MQ=50.57;MQ0=0;MQRankSum=-5.244;QD=1.56;ReadPosRankSum=-7.732;SB=-1.630e+02	GT:AD:DP:GQ:PL	0/1:85,34:121:99:219,0,1048
chrXIV	480118	.	G	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.15;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1201,135,0
chrXIV	480527	.	A	C	1312	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.18;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1345,153,0
chrXIV	481070	.	T	A	1130	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;DP=71;Dels=0.00;FS=3.065;HaplotypeScore=9.9353;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.712;QD=15.92;ReadPosRankSum=2.311;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1163,126,0
chrXIV	481081	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.97;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1304,138,0
chrXIV	481317	.	A	G	867	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=6.4763;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.85;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:900,105,0
chrXIV	482124	.	C	T	1143	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.57;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1176,126,0
chrXIV	483386	.	G	T	2069	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.25;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:2102,225,0
chrXIV	483741	.	G	A	2179	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=8.8147;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.36;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2212,243,0
chrXIV	483894	.	G	A	1429	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.8579;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.41;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1462,168,0
chrXIV	483951	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=18.86;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1353,147,0
chrXIV	483985	.	C	G	1464	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.01;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1497,168,0
chrXIV	484017	.	C	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.97;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1459,159,0
chrXIV	484452	.	C	T	2103	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.11;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2136,240,0
chrXIV	484786	.	C	A	1547	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.83;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1580,183,0
chrXIV	484851	.	A	G	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=85;Dels=0.00;FS=6.173;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=-0.675;QD=16.45;ReadPosRankSum=2.868;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:3,81:85:99:1431,165,0
chrXIV	484869	.	A	G	1656	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.7719;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;MQRankSum=0.000;QD=16.90;ReadPosRankSum=1.626;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1689,192,0
chrXIV	484904	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.6160;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=-1.155;QD=17.51;ReadPosRankSum=1.702;SB=-1.286e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2029,225,0
chrXIV	485289	.	G	A	3601.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=22.65;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,159:159:99:3601,387,0
chrXIV	485525	.	A	G	1002	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.27;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1035,114,0
chrXIV	485799	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.087;QD=22.23;ReadPosRankSum=2.242;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1611,177,0
chrXIV	485870	.	C	T	1089	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.80;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1122,126,0
chrXIV	485972	.	T	C	991	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.35;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1024,117,0
chrXIV	486092	.	T	C	1208	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=69;Dels=0.00;FS=4.346;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;MQRankSum=-0.459;QD=17.51;ReadPosRankSum=1.681;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1241,141,0
chrXIV	486859	.	T	A	1982	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9722;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.60;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2015,216,0
chrXIV	487935	.	C	T	2278	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.33;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2311,249,0
chrXIV	492375	.	A	G	1698	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.08;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1731,201,0
chrXIV	492875	.	G	A	772	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.14;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:90:805,90,0
chrXIV	493333	.	T	G	871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.714;QD=25.62;ReadPosRankSum=1.631;SB=-7.601e+01	GT:AD:DP:GQ:PL	1/1:1,33:34:99:904,99,0
chrXIV	494028	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1704,189,0
chrXIV	494733	.	C	T	1391	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=18.55;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1424,159,0
chrXIV	495599	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.71;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1850,201,0
chrXIV	495918	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.25;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1733,186,0
chrXIV	496457	.	G	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=9.8284;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=15.78;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1406,153,0
chrXIV	496545	.	A	G	2816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.732;QD=19.83;ReadPosRankSum=1.683;SB=-1.343e+03	GT:AD:DP:GQ:PL	1/1:1,141:142:99:2849,324,0
chrXIV	497303	.	C	G	1287	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1320,150,0
chrXIV	497369	.	G	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.08;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1238,135,0
chrXIV	498514	.	T	C	1775	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.64;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1808,204,0
chrXIV	499188	.	A	G	935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=3.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=-1.121;QD=18.33;ReadPosRankSum=1.664;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:968,111,0
chrXIV	499215	.	C	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.76;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1175,129,0
chrXIV	499366	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.97;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1251,138,0
chrXIV	499614	.	G	A	2920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.819;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=6.1255;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=1.705;QD=22.12;ReadPosRankSum=1.517;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:1,130:132:99:2953,342,0
chrXIV	500387	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=19.76;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1258,138,0
chrXIV	500550	.	A	G	2023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=4.276;HaplotypeScore=4.1329;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.504;QD=22.23;ReadPosRankSum=1.694;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2056,228,0
chrXIV	500621	.	T	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=20.49;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1406,162,0
chrXIV	500627	.	T	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.41;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1339,153,0
chrXIV	500652	.	T	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.30;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1311,141,0
chrXIV	500701	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.014;QD=20.37;ReadPosRankSum=2.396;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:2,89:91:99:1887,216,0
chrXIV	500742	.	T	C	1992	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.64;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2025,222,0
chrXIV	500767	.	A	G	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=3.680;HaplotypeScore=59.9148;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;MQRankSum=-0.165;QD=20.00;ReadPosRankSum=1.650;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1713,195,0
chrXIV	501214	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=22.33;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1663,189,0
chrXIV	501247	.	C	T	1660	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.74;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1693,183,0
chrXIV	501338	.	C	G	1552	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=19.65;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1585,180,0
chrXIV	501452	.	T	C	2446	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.3880;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=20.38;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2479,285,0
chrXIV	501463	.	C	A	2562	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=8.1550;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=20.17;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:0,125:127:99:2595,276,0
chrXIV	501563	.	A	G	1300	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.97;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1333,150,0
chrXIV	501564	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=22.53;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1430,150,0
chrXIV	501765	.	C	T	1566	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=16.48;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1599,171,0
chrXIV	501824	.	C	A	1948	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9055;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.29;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1981,216,0
chrXIV	502079	.	G	A	1149	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.24;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1182,138,0
chrXIV	502322	.	A	G	1053	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.49;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1086,126,0
chrXIV	502360	.	C	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7765;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.42;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1249,138,0
chrXIV	502448	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.73;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1588,171,0
chrXIV	502486	.	C	T	1405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2390;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.933;QD=21.62;ReadPosRankSum=0.400;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1438,156,0
chrXIV	502729	.	T	C	1253	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=21.60;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1286,147,0
chrXIV	502874	.	C	G	905	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.8893;MLEAC=2;MLEAF=1.00;MQ=32.45;MQ0=0;QD=17.40;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:938,108,0
chrXIV	502885	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=36.37;MQ0=0;MQRankSum=-1.182;QD=17.05;ReadPosRankSum=1.677;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1107,126,0
chrXIV	502907	.	G	A	1189	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.43;MQ0=0;QD=18.02;SB=-1.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1222,135,0
chrXIV	502911	.	C	T	1177	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.21;MQ0=0;QD=17.57;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1210,132,0
chrXIV	502975	.	C	T	674	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=12.96;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:707,81,0
chrXIV	503026	.	A	G	39.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;DP=43;Dels=0.00;FS=3.124;HaplotypeScore=7.1363;MLEAC=1;MLEAF=0.500;MQ=32.15;MQ0=0;MQRankSum=0.930;QD=0.91;ReadPosRankSum=-3.504;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:28,15:43:39:69,0,39
chrXIV	503038	.	C	G	60.51	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=18.1893;MLEAC=2;MLEAF=1.00;MQ=32.33;MQ0=0;QD=2.24;SB=-2.285e+02	GT:AD:DP:GQ:PL	1/1:0,26:27:12:93,12,0
chrXIV	503187	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=24.28;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1441,156,0
chrXIV	503211	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.82;MQ0=0;QD=20.33;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1334,144,0
chrXIV	503217	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=19.08;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1273,138,0
chrXIV	503261	.	A	G	745	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=51.99;MQ0=0;QD=15.52;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:778,87,0
chrXIV	503320	.	C	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.57;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1082,123,0
chrXIV	503392	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.99;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1757,195,0
chrXIV	503642	.	C	T	3521.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=149;Dels=0.00;FS=3.808;HaplotypeScore=9.0366;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.639;QD=23.63;ReadPosRankSum=0.825;SB=-1.519e+03	GT:AD:DP:GQ:PL	1/1:1,148:149:99:3521,390,0
chrXIV	505233	.	A	C	1533	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=74;Dels=0.00;FS=7.811;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-0.524;QD=20.72;ReadPosRankSum=2.382;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:2,71:74:99:1566,177,0
chrXIV	505410	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.69;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1792,201,0
chrXIV	506144	.	A	G	1722	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8865;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=19.79;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1755,192,0
chrXIV	506324	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.8894;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=19.77;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:71:99:1437,153,0
chrXIV	506906	.	A	C	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;DP=114;Dels=0.00;FS=10.019;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.142;QD=17.53;ReadPosRankSum=2.363;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:2,111:114:99:2031,228,0
chrXIV	506920	.	G	A	2272	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.29;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2305,243,0
chrXIV	507053	.	T	G	1194	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.90;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1227,138,0
chrXIV	507058	.	G	A	1273	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=19.89;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1306,138,0
chrXIV	507351	.	C	T	1279	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=17.28;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1312,141,0
chrXIV	507355	.	T	A	1090	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.022;QD=13.46;ReadPosRankSum=1.687;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1123,129,0
chrXIV	507430	.	G	T	1413	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=3.261;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;MQRankSum=-0.136;QD=15.70;ReadPosRankSum=1.654;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1446,156,0
chrXIV	507431	.	A	T	1441	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.448;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=4.9540;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=-1.382;QD=16.19;ReadPosRankSum=1.654;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1474,159,0
chrXIV	507432	.	A	T	1451	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;DP=89;Dels=0.00;FS=3.261;HaplotypeScore=4.9540;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;MQRankSum=0.175;QD=16.30;ReadPosRankSum=1.693;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1484,159,0
chrXIV	507433	.	A	C	1393	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.578;DP=90;Dels=0.00;FS=3.310;HaplotypeScore=4.9540;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;MQRankSum=-0.154;QD=15.48;ReadPosRankSum=1.694;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1426,162,0
chrXIV	507599	.	A	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.46;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1901,213,0
chrXIV	507677	.	T	A	1744	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.82;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1777,192,0
chrXIV	507790	.	A	G	2010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=98;Dels=0.00;FS=8.535;HaplotypeScore=11.0375;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.942;QD=20.51;ReadPosRankSum=2.048;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:99:2043,228,0
chrXIV	508159	.	T	C	1860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-1.142;QD=19.79;ReadPosRankSum=1.695;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1893,213,0
chrXIV	508321	.	C	T	1743	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.93;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1776,198,0
chrXIV	508617	.	G	A	985	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.70;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1018,111,0
chrXIV	508645	.	T	C	1406	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.09;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1439,162,0
chrXIV	508667	.	A	G	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6215;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.632;QD=19.58;ReadPosRankSum=1.180;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1384,153,0
chrXIV	508743	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4470;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.65;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1685,189,0
chrXIV	508757	.	C	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.93;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1770,195,0
chrXIV	508768	.	G	A	1513	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.01;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1546,180,0
chrXIV	509043	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2954;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=0.942;QD=20.55;ReadPosRankSum=1.672;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1225,135,0
chrXIV	509173	.	C	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=15.92;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1052,114,0
chrXIV	509283	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=20.93;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1435,162,0
chrXIV	509369	.	G	A	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DP=84;Dels=0.00;FS=6.638;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.482;QD=21.02;ReadPosRankSum=1.273;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1799,173,0
chrXIV	509478	.	C	A	1017	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=19.56;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1050,114,0
chrXIV	509580	.	G	T	1140	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.00;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1173,129,0
chrXIV	509646	.	C	T	2084	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.81;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2117,228,0
chrXIV	510265	.	A	G	711	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.60;MQ0=0;QD=13.42;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:744,84,0
chrXIV	510274	.	C	A	730	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=38.06;MQ0=0;QD=12.37;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:84:763,84,0
chrXIV	510285	.	A	G	596	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.0070;MLEAC=2;MLEAF=1.00;MQ=38.84;MQ0=0;QD=9.61;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:72:629,72,0
chrXIV	510300	.	T	C	780	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=41.57;MQ0=0;QD=11.30;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:93:813,93,0
chrXIV	510362	.	T	A	746	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=9.2012;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;MQRankSum=-1.453;QD=12.03;ReadPosRankSum=-1.509;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:87:779,87,0
chrXIV	510401	.	A	T	982	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=17.85;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1015,111,0
chrXIV	510459	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=20.16;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1263,135,0
chrXIV	510471	.	G	A	1064	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=18.34;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1097,120,0
chrXIV	510479	.	A	G	978	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.56;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1011,114,0
chrXIV	510728	.	G	A	1113	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=23.19;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1146,126,0
chrXIV	510751	.	A	G	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=1.228;QD=22.38;ReadPosRankSum=1.669;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1264,141,0
chrXIV	510803	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.98;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1330,153,0
chrXIV	510838	.	T	C	1164	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.56;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1197,135,0
chrXIV	511838	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.04;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1456,162,0
chrXIV	511916	.	C	T	1832	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=20.13;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1865,207,0
chrXIV	512000	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=70;Dels=0.00;FS=3.016;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.745;QD=18.16;ReadPosRankSum=2.274;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1304,147,0
chrXIV	512380	.	C	T	1022	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=17.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1055,111,0
chrXIV	512400	.	C	T	1012	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=23.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1045,111,0
chrXIV	512455	.	G	A	549	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.87;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:63:582,63,0
chrXIV	512722	.	A	G	1655	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.08;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1688,186,0
chrXIV	512905	.	C	T	2071	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.1530;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.36;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2104,240,0
chrXIV	513243	.	T	C	2055	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.654;QD=22.83;ReadPosRankSum=1.694;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2088,231,0
chrXIV	513525	.	A	G	1934	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.066;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.960;QD=17.74;ReadPosRankSum=2.382;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:2,107:109:99:1967,222,0
chrXIV	513700	.	G	T	1119	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.65;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1152,126,0
chrXIV	513783	.	G	A	1402	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9544;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.32;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1435,153,0
chrXIV	513927	.	A	G	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=60;Dels=0.00;FS=3.485;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.418;QD=19.42;ReadPosRankSum=1.673;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,57:60:99:1198,135,0
chrXIV	514015	.	G	A	1117	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.02;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1150,126,0
chrXIV	514870	.	T	C	928	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=45;Dels=0.00;FS=6.320;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.964;QD=20.62;ReadPosRankSum=2.341;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:961,105,0
chrXIV	515028	.	C	T	2990	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.0877;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.65;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3023,333,0
chrXIV	515081	.	G	A	2526	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.76;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2559,276,0
chrXIV	515393	.	C	T	1675	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=9.0358;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=16.58;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1708,192,0
chrXIV	515478	.	C	A	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.755;QD=21.84;ReadPosRankSum=0.977;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1758,189,0
chrXIV	515537	.	C	T	1614	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=19.93;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1647,183,0
chrXIV	515602	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=22.23;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,82:86:99:1945,207,0
chrXIV	516034	.	A	G	1839	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.96;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1872,210,0
chrXIV	516367	.	C	T	1913	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.24;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1946,213,0
chrXIV	516909	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.74;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1625,177,0
chrXIV	517269	.	A	G	1193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=4.523;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=0.713;QD=23.39;ReadPosRankSum=1.664;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1226,141,0
chrXIV	517634	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.45;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1556,174,0
chrXIV	517810	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.63;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1393,153,0
chrXIV	517970	.	C	T	2051	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2084,237,0
chrXIV	518602	.	G	T	1117	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.27;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1150,123,0
chrXIV	518686	.	G	A	926	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=17.81;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:959,102,0
chrXIV	519058	.	T	C	1057	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=22.02;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1090,123,0
chrXIV	519402	.	C	G	1069	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=51;MQRankSum=3.390;QD=7.80;ReadPosRankSum=4.001;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:32,104:137:99:1102,132,0
chrXIV	519448	.	T	A	425	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=20.8254;MLEAC=2;MLEAF=1.00;MQ=18.06;MQ0=20;QD=8.02;SB=-6.545e-03	GT:AD:DP:GQ:PL	1/1:8,45:53:54:458,54,0
chrXIV	520142	.	A	C	283	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.432;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.02;MQ0=3;MQRankSum=1.583;QD=10.88;ReadPosRankSum=1.432;SB=-8.666e-03	GT:AD:DP:GQ:PL	1/1:1,25:26:36:316,36,0
chrXIV	523434	.	G	A	1142.02	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.286;DP=525;Dels=0.00;FS=163.178;HaplotypeScore=26.6324;MLEAC=1;MLEAF=0.500;MQ=16.96;MQ0=44;MQRankSum=0.079;QD=2.18;ReadPosRankSum=2.287;SB=-8.160e+02	GT:AD:DP:GQ:PL	0/1:145,379:525:24:1172,0,24
chrXIV	523441	.	G	T	1150.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=10.833;DP=507;Dels=0.00;FS=151.075;HaplotypeScore=8.2224;MLEAC=1;MLEAF=0.500;MQ=15.69;MQ0=56;MQRankSum=0.882;QD=2.27;ReadPosRankSum=2.731;SB=-8.240e+02	GT:AD:DP:GQ:PL	0/1:146,360:507:31:1180,0,31
chrXIV	523731	.	G	A	15.14	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;DP=141;Dels=0.00;FS=4.643;HaplotypeScore=9.3463;MLEAC=1;MLEAF=0.500;MQ=16.45;MQ0=49;MQRankSum=4.115;QD=0.11;ReadPosRankSum=-3.471;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:124,17:141:45:45,0,196
chrXIV	523848	.	A	C	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.462;DP=153;Dels=0.00;FS=43.717;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=23.78;MQ0=52;MQRankSum=1.365;QD=0.15;ReadPosRankSum=-0.898;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:139,14:153:53:53,0,901
chrXIV	523878	.	C	T	615.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;DP=148;Dels=0.00;FS=124.460;HaplotypeScore=11.7764;MLEAC=1;MLEAF=0.500;MQ=38.06;MQ0=18;MQRankSum=0.499;QD=4.16;ReadPosRankSum=-1.103;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:101,47:148:99:645,0,1147
chrXIV	523953	.	A	G	521.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014;DP=127;Dels=0.00;FS=72.992;HaplotypeScore=15.3892;MLEAC=1;MLEAF=0.500;MQ=44.15;MQ0=5;MQRankSum=-2.242;QD=4.10;ReadPosRankSum=0.438;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:90,37:127:99:551,0,1663
chrXIV	525453	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=73.4546;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;QD=15.89;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1670,189,0
chrXIV	525472	.	G	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=105.9829;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=12.98;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:1539,165,0
chrXIV	525484	.	C	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.50;MQ0=0;QD=11.30;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1253,135,0
chrXIV	525522	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=4.119;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=33.75;MQ0=0;MQRankSum=1.545;QD=12.77;ReadPosRankSum=1.670;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:1451,159,0
chrXIV	525575	.	T	C	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=115;Dels=0.00;FS=3.008;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;MQRankSum=-1.744;QD=16.20;ReadPosRankSum=2.279;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:2,113:115:99:1896,207,0
chrXIV	525857	.	T	C	2667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=130;Dels=0.00;FS=3.182;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;MQRankSum=0.336;QD=20.52;ReadPosRankSum=1.652;SB=-1.536e+03	GT:AD:DP:GQ:PL	1/1:1,128:130:99:2700,309,0
chrXIV	525960	.	T	C	2585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.776;DP=128;Dels=0.00;FS=19.647;HaplotypeScore=12.8584;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=0.061;QD=20.20;ReadPosRankSum=3.604;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:5,123:128:99:2618,291,0
chrXIV	526397	.	G	A	1892	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.2362;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=18.92;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1925,210,0
chrXIV	526433	.	C	T	2223	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.68;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,114:119:99:2256,246,0
chrXIV	526658	.	G	A	2422	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.62;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2455,270,0
chrXIV	526700	.	T	C	1805	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.7743;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.28;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1838,204,0
chrXIV	526742	.	A	T	1248	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.63;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1281,141,0
chrXIV	526799	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4198;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=-0.462;QD=19.08;ReadPosRankSum=1.694;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1750,198,0
chrXIV	526838	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=19.16;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2006,219,0
chrXIV	526877	.	T	G	1733	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.15;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1766,204,0
chrXIV	527003	.	T	C	2193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=134;Dels=0.00;FS=5.891;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;MQRankSum=-0.472;QD=16.37;ReadPosRankSum=1.706;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,131:134:99:2226,258,0
chrXIV	527012	.	C	T	2340	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=16.48;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2373,267,0
chrXIV	527048	.	G	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.8761;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=18.59;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,101:103:99:1948,216,0
chrXIV	527087	.	T	C	1524	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=20.88;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1557,174,0
chrXIV	527207	.	C	A	1474	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=16.38;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1507,165,0
chrXIV	527225	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=12.95;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1224,138,0
chrXIV	527281	.	C	G	1131	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=15.49;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1164,129,0
chrXIV	527330	.	A	G	1456	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.10;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1489,168,0
chrXIV	527510	.	G	A	326	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=4.35;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:39:359,39,0
chrXIV	527794	.	C	T	1176	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.67;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1209,135,0
chrXIV	528074	.	C	T	2471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.9070;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.461;QD=21.12;ReadPosRankSum=1.371;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2504,261,0
chrXIV	528143	.	G	C	2007	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=22.05;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:2040,231,0
chrXIV	528195	.	C	T	1406	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.422;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.2319;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.629;QD=20.68;ReadPosRankSum=-1.681;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1439,156,0
chrXIV	528567	.	C	G	1952	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=19.72;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1985,219,0
chrXIV	528641	.	C	T	2365	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.70;SB=-1.126e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2398,255,0
chrXIV	528906	.	T	C	1658	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.26;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1691,189,0
chrXIV	528971	.	G	A	1612	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=20.67;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1645,180,0
chrXIV	529082	.	C	T	1629	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=19.87;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1662,183,0
chrXIV	529097	.	C	T	1543	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=46.11;MQ0=0;QD=16.96;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1576,171,0
chrXIV	529112	.	A	G	1466	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.88;MQ0=0;QD=15.93;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1499,168,0
chrXIV	529133	.	A	G	1079	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=12.26;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1112,123,0
chrXIV	529136	.	A	G	1025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=2.901;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=46.09;MQ0=0;MQRankSum=-0.457;QD=11.52;ReadPosRankSum=2.339;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1058,120,0
chrXIV	529316	.	T	C	875	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=13.89;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:908,102,0
chrXIV	529820	.	G	A	3307.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=5.5932;MLEAC=2;MLEAF=1.00;MQ=59.92;MQ0=0;QD=22.50;SB=-1.550e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3307,360,0
chrXIV	530298	.	T	C	1849	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.88;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1882,216,0
chrXIV	530418	.	G	A	1472	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.4943;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.73;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1505,168,0
chrXIV	530856	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=10.254;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=0.657;QD=19.08;ReadPosRankSum=2.354;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1521,171,0
chrXIV	531399	.	G	A	1703	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=12.2991;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=17.74;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1736,195,0
chrXIV	531505	.	G	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=20.44;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1750,186,0
chrXIV	531520	.	A	G	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=4.586;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;MQRankSum=1.393;QD=19.57;ReadPosRankSum=1.694;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,91:93:99:1853,213,0
chrXIV	531611	.	G	A	1974	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.5796;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.14;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2007,219,0
chrXIV	531656	.	G	A	2334	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=15.0967;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.22;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2367,258,0
chrXIV	532165	.	T	C	1391	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.08;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1424,159,0
chrXIV	532531	.	C	T	2260	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.54;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2293,249,0
chrXIV	532649	.	A	C	1127	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9402;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=21.26;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1160,132,0
chrXIV	532670	.	G	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=23.45;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1135,123,0
chrXIV	532716	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.92;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1089,120,0
chrXIV	532717	.	A	C	1058	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=19.96;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1091,123,0
chrXIV	532790	.	T	A	2087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=108;Dels=0.00;FS=9.383;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-0.194;QD=19.32;ReadPosRankSum=2.176;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:2,106:108:99:2120,237,0
chrXIV	532945	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.07;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1571,168,0
chrXIV	533183	.	A	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.94;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1876,204,0
chrXIV	533288	.	T	C	1892	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3449;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.65;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1925,213,0
chrXIV	533519	.	A	G	1723	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.36;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1756,198,0
chrXIV	533533	.	A	G	1619	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=84;Dels=0.00;FS=8.468;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-0.249;QD=19.27;ReadPosRankSum=2.333;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1652,189,0
chrXIV	533705	.	T	A	2221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=3.240;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.232;QD=22.90;ReadPosRankSum=1.696;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2254,243,0
chrXIV	533926	.	T	C	2065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=103;Dels=0.00;FS=6.326;HaplotypeScore=8.2877;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=1.127;QD=20.05;ReadPosRankSum=1.698;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2098,231,0
chrXIV	533937	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.37;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1826,201,0
chrXIV	534210	.	T	C	1332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.354;QD=24.22;ReadPosRankSum=1.669;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1365,153,0
chrXIV	534246	.	T	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.36;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1218,138,0
chrXIV	534658	.	C	T	1866	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.06;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1899,204,0
chrXIV	534750	.	C	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2803;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.03;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1972,213,0
chrXIV	535294	.	C	T	3542.01	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=9.1769;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=24.43;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3542,390,0
chrXIV	535369	.	A	G	1628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.282;DP=88;Dels=0.00;FS=6.909;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.546;QD=18.50;ReadPosRankSum=2.394;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1661,192,0
chrXIV	535542	.	C	A	2015	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=19.95;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2048,219,0
chrXIV	535580	.	C	T	1780	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=17.28;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1813,210,0
chrXIV	535584	.	A	G	1886	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=18.67;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1919,216,0
chrXIV	535827	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.233;QD=20.22;ReadPosRankSum=1.681;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1388,156,0
chrXIV	535965	.	A	G	1981	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.1665;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=21.77;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2014,231,0
chrXIV	536139	.	C	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.08;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1361,147,0
chrXIV	536514	.	G	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.05;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1401,153,0
chrXIV	536661	.	A	G	1363	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1396,159,0
chrXIV	536830	.	G	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.15;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1302,141,0
chrXIV	536942	.	T	C	1295	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9470;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.33;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1328,150,0
chrXIV	537042	.	A	G	1095	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=17.11;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1128,126,0
chrXIV	537237	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=3.274;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.732;QD=23.35;ReadPosRankSum=1.597;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1247,138,0
chrXIV	537329	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=20.15;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1726,192,0
chrXIV	537369	.	C	G	1781	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=23.13;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1814,207,0
chrXIV	537549	.	C	T	1574	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=18.96;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1607,174,0
chrXIV	537552	.	T	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=18.39;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1541,177,0
chrXIV	537637	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7624;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.37;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1642,183,0
chrXIV	537756	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;MQRankSum=-1.299;QD=19.06;ReadPosRankSum=1.693;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1710,192,0
chrXIV	537771	.	A	G	1382	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=16.45;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1415,162,0
chrXIV	537783	.	T	G	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=81;Dels=0.00;FS=6.636;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;MQRankSum=-1.537;QD=15.21;ReadPosRankSum=2.328;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1265,138,0
chrXIV	537806	.	T	C	1013	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=15.58;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1046,117,0
chrXIV	537827	.	A	G	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;MQRankSum=-1.444;QD=15.40;ReadPosRankSum=1.684;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1157,129,0
chrXIV	537960	.	G	A	1710	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.37;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1743,186,0
chrXIV	537981	.	A	C	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=2.947;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.359;QD=17.68;ReadPosRankSum=2.294;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:2,77:81:99:1465,168,0
chrXIV	538142	.	G	A	1322	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.39;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1355,153,0
chrXIV	538315	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.14;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1826,198,0
chrXIV	538517	.	G	T	1943	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.89;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1976,219,0
chrXIV	538772	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.06;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1348,153,0
chrXIV	539366	.	T	A	2045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3884;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.231;QD=22.72;ReadPosRankSum=1.694;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2078,222,0
chrXIV	539651	.	C	T	1815	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1848,198,0
chrXIV	539903	.	C	T	3116	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.9313;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=25.13;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3149,345,0
chrXIV	540168	.	G	A	1717	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1324;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.69;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1750,192,0
chrXIV	540188	.	T	A	1792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=9.955;HaplotypeScore=4.8690;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.920;QD=20.60;ReadPosRankSum=2.393;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1825,198,0
chrXIV	540721	.	T	C	1107	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.77;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1140,126,0
chrXIV	540985	.	G	A	1990	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.63;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2023,225,0
chrXIV	541016	.	G	A	1879	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5460;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.85;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1912,207,0
chrXIV	541405	.	C	G	866	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.591;DP=49;Dels=0.00;FS=4.597;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.955;QD=17.67;ReadPosRankSum=0.247;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:83:899,83,0
chrXIV	541561	.	T	A	2757	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=24.18;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2790,300,0
chrXIV	541624	.	T	C	2645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.799;DP=115;Dels=0.00;FS=5.163;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=0.149;QD=23.00;ReadPosRankSum=2.764;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:3,112:115:99:2678,282,0
chrXIV	541746	.	G	A	856	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.02;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:889,96,0
chrXIV	541750	.	T	C	787	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=16.74;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:820,93,0
chrXIV	542408	.	G	C	1423	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1456,162,0
chrXIV	542443	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1378,156,0
chrXIV	542549	.	T	C	1685	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.55;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1718,195,0
chrXIV	542570	.	G	A	1459	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=17.37;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1492,159,0
chrXIV	542576	.	T	C	1420	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.75;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1453,165,0
chrXIV	542690	.	G	C	1308	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7476;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.24;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1341,150,0
chrXIV	542931	.	T	C	1504	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=17.29;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1537,168,0
chrXIV	543016	.	G	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.76;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1673,183,0
chrXIV	544744	.	G	A	1574	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0169;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.326;QD=22.81;ReadPosRankSum=0.577;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1607,174,0
chrXIV	544998	.	T	C	1128	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.937;QD=18.49;ReadPosRankSum=1.562;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1161,132,0
chrXIV	545184	.	A	G	1677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.913;DP=84;Dels=0.00;FS=9.363;HaplotypeScore=9.9622;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.663;QD=19.96;ReadPosRankSum=2.913;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:3,78:84:99:1710,189,0
chrXIV	545273	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.71;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1400,156,0
chrXIV	545433	.	G	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.61;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1412,159,0
chrXIV	546569	.	G	A	1743	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.5866;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=22.64;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1776,192,0
chrXIV	547464	.	T	C	1253	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=44.26;MQ0=0;QD=17.65;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1286,141,0
chrXIV	547766	.	A	T	796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=44;Dels=0.00;FS=4.771;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;MQRankSum=0.825;QD=18.09;ReadPosRankSum=1.650;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:90:829,90,0
chrXIV	548403	.	T	C	1529	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.95;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1562,171,0
chrXIV	548516	.	T	C	1627	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.41;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1660,192,0
chrXIV	548771	.	T	C	1441	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.19;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1474,165,0
chrXIV	549170	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.27;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1336,147,0
chrXIV	549239	.	A	G	1957	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.1440;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=0.791;QD=20.60;ReadPosRankSum=2.294;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1990,222,0
chrXIV	549448	.	A	C	1715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=85;Dels=0.00;FS=3.612;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.183;QD=20.18;ReadPosRankSum=1.691;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1748,195,0
chrXIV	549560	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1501,168,0
chrXIV	549689	.	G	A	2414	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.55;SB=-1.282e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2447,261,0
chrXIV	549842	.	C	G	1609	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.37;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1642,192,0
chrXIV	550173	.	A	T	1105	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.85;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1138,123,0
chrXIV	550193	.	T	C	950	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;MQRankSum=-0.064;QD=17.59;ReadPosRankSum=1.668;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:983,111,0
chrXIV	550908	.	G	C	1541	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.55;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1574,180,0
chrXIV	551869	.	T	A	1592	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.23;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1625,186,0
chrXIV	551904	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.76;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1513,165,0
chrXIV	551939	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.85;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1273,144,0
chrXIV	552035	.	C	G	1968	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.68;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2001,225,0
chrXIV	552067	.	A	G	2351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=112;Dels=0.00;FS=3.214;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-1.510;QD=20.99;ReadPosRankSum=1.700;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:1,108:112:99:2384,270,0
chrXIV	552144	.	G	A	2870	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=52.02;MQ0=0;QD=19.79;SB=-1.645e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:2903,330,0
chrXIV	552287	.	G	A	1679	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.53;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1712,195,0
chrXIV	552334	.	G	A	2446	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.04;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2479,270,0
chrXIV	552417	.	C	A	2105	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=37.57;MQ0=0;QD=15.04;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2138,240,0
chrXIV	552548	.	T	C	1618	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.7148;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.74;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1651,189,0
chrXIV	552682	.	G	A	2894	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=20.52;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:2927,327,0
chrXIV	552709	.	G	A	2937	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=20.68;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:0,140:142:99:2970,318,0
chrXIV	552787	.	C	G	2791	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=11.1863;MLEAC=2;MLEAF=1.00;MQ=41.08;MQ0=0;QD=20.98;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,127:133:99:2824,309,0
chrXIV	552957	.	A	G	2675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.671;DP=114;Dels=0.00;FS=3.667;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.517;QD=23.46;ReadPosRankSum=1.702;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2708,306,0
chrXIV	553147	.	G	C	1817	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;QD=12.36;SB=-1.773e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:1850,204,0
chrXIV	553207	.	T	A	2882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=151;Dels=0.00;FS=4.466;HaplotypeScore=4.7225;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.493;QD=19.09;ReadPosRankSum=1.617;SB=-1.235e+03	GT:AD:DP:GQ:PL	1/1:1,150:151:99:2915,318,0
chrXIV	553370	.	G	C	2386	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.0907;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.50;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2419,267,0
chrXIV	553539	.	C	T	1935	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.59;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1968,210,0
chrXIV	553652	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4120;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.97;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1962,213,0
chrXIV	553832	.	C	T	905	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.47;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:938,108,0
chrXIV	554140	.	T	C	696	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.85;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:81:729,81,0
chrXIV	554151	.	T	C	690	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.6219;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=0.000;QD=18.65;ReadPosRankSum=1.636;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:1,35:37:78:723,78,0
chrXIV	554217	.	T	C	743	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.55;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:776,84,0
chrXIV	554609	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.44;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1580,177,0
chrXIV	555245	.	T	C	1285	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.7132;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.78;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1318,147,0
chrXIV	555416	.	C	T	738	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.50;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:771,84,0
chrXIV	555441	.	T	C	770	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.33;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:90:803,90,0
chrXIV	555551	.	T	C	867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.444;QD=14.45;ReadPosRankSum=0.173;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:900,102,0
chrXIV	555641	.	T	C	871	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.9101;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=17.78;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:904,102,0
chrXIV	555698	.	T	C	844	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:877,99,0
chrXIV	555821	.	A	G	1205	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.31;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1238,138,0
chrXIV	556301	.	C	T	1685	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=24.42;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1718,189,0
chrXIV	556380	.	T	C	1666	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.83;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1699,192,0
chrXIV	556391	.	T	C	1545	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=16.98;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1578,177,0
chrXIV	556412	.	G	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=17.80;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1795,195,0
chrXIV	556547	.	G	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.5873;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.47;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1772,192,0
chrXIV	556862	.	A	C	2363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.277;DP=118;Dels=0.00;FS=7.940;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.637;QD=20.03;ReadPosRankSum=2.407;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:2,114:118:99:2396,276,0
chrXIV	556914	.	A	T	2570	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.36;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2603,279,0
chrXIV	557553	.	G	A	1324	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3443;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=18.14;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1357,156,0
chrXIV	557562	.	T	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7134;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=17.79;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1278,141,0
chrXIV	557698	.	G	A	1274	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1307,144,0
chrXIV	557801	.	C	A	2060	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.91;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2093,225,0
chrXIV	558310	.	G	T	1901	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.1687;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=17.28;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1934,207,0
chrXIV	558811	.	G	A	2156	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=12.1668;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=19.78;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2189,246,0
chrXIV	559022	.	A	G	1592	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.520;QD=19.90;ReadPosRankSum=1.689;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1625,180,0
chrXIV	559195	.	C	T	2176	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=20.34;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2209,240,0
chrXIV	559202	.	C	T	2213	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=22.35;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2246,243,0
chrXIV	559431	.	G	A	764	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.9497;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=11.94;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:90:797,90,0
chrXIV	559455	.	A	G	463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;MQRankSum=0.346;QD=8.42;ReadPosRankSum=1.606;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:57:496,57,0
chrXIV	559472	.	T	C	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.05;MQ0=0;QD=0.36;SB=-5.008e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:6:48,6,0
chrXIV	559489	.	A	G	464	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=8.92;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:57:497,57,0
chrXIV	559622	.	C	T	943	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=81.5624;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=9.82;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:976,111,0
chrXIV	559694	.	G	T	2109	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.01;FS=0.000;HaplotypeScore=19.9078;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.35;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2142,234,0
chrXIV	559792	.	A	C	1301	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=19.71;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1334,150,0
chrXIV	559885	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.5623;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.23;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1004,111,0
chrXIV	559919	.	C	G	665	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.3563;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=14.46;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:78:698,78,0
chrXIV	559921	.	G	A	663	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.7789;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=15.79;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:696,75,0
chrXIV	560119	.	A	G	1679	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=2.002;QD=21.53;ReadPosRankSum=2.354;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1712,195,0
chrXIV	560185	.	C	T	1892	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.75;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1925,210,0
chrXIV	560302	.	A	G	1779	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.18;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1812,198,0
chrXIV	560362	.	C	T	1719	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=23.87;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1752,189,0
chrXIV	560371	.	G	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=21.28;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1608,183,0
chrXIV	560459	.	A	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=21.88;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1521,162,0
chrXIV	560592	.	A	G	3856.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.108;DP=210;Dels=0.00;FS=1.408;HaplotypeScore=23.5186;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;MQRankSum=-1.585;QD=18.36;ReadPosRankSum=1.665;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:10,199:210:99:3856,441,0
chrXIV	560823	.	T	C	228	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=3.08;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:30:261,30,0
chrXIV	560856	.	G	A	965	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.10;MQ0=0;QD=9.75;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:998,108,0
chrXIV	560870	.	T	C	1090	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=10.38;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1123,126,0
chrXIV	560881	.	A	G	1127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-1.434;QD=10.34;ReadPosRankSum=2.405;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:2,107:109:99:1160,135,0
chrXIV	560883	.	T	C	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=108;Dels=0.00;FS=6.717;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.513;QD=10.52;ReadPosRankSum=1.700;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,107:108:99:1169,135,0
chrXIV	560907	.	C	T	1839	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=14.71;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:1872,201,0
chrXIV	560909	.	T	C	1753	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=129;Dels=0.00;FS=10.933;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.44;MQ0=0;MQRankSum=-1.344;QD=13.59;ReadPosRankSum=2.392;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:2,127:129:99:1786,204,0
chrXIV	560940	.	G	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=3.3060;MLEAC=2;MLEAF=1.00;MQ=45.61;MQ0=0;QD=12.36;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:1726,189,0
chrXIV	561110	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.61;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1654,180,0
chrXIV	561138	.	T	G	1107	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;MQRankSum=0.830;QD=17.30;ReadPosRankSum=2.373;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1140,129,0
chrXIV	561164	.	A	T	713	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=12.96;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:81:746,81,0
chrXIV	561180	.	A	G	352	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=32.7732;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=8.00;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:45:385,45,0
chrXIV	561323	.	G	A	2447	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=19.12;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2480,276,0
chrXIV	561560	.	G	T	2109	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=38.07;MQ0=0;QD=19.90;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2142,234,0
chrXIV	561609	.	T	C	49.14	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.79;MQ0=0;MQRankSum=0.736;QD=8.19;ReadPosRankSum=-0.736;SB=0.124	GT:AD:DP:GQ:PL	0/1:1,5:6:12:79,0,12
chrXIV	561611	.	G	A	23.10	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.79;MQ0=0;MQRankSum=0.736;QD=3.85;ReadPosRankSum=-0.736;SB=0.190	GT:AD:DP:GQ:PL	0/1:1,5:6:15:53,0,15
chrXIV	561711	.	G	A	170.03	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=17.05;MQ0=22;QD=4.36;SB=-2.367e-02	GT:AD:DP:GQ:PL	1/1:19,19:39:24:203,24,0
chrXIV	561783	.	A	T	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.241;DP=75;Dels=0.00;FS=3.660;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=23.04;MQ0=3;MQRankSum=1.636;QD=17.85;ReadPosRankSum=1.155;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1372,170,0
chrXIV	567306	.	C	T	545	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.33;MQ0=1;QD=24.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:63:578,63,0
chrXIV	567667	.	A	T	33.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.030;DP=38;Dels=0.00;FS=14.523;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=3;MQRankSum=0.746;QD=0.89;ReadPosRankSum=0.391;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:3,35:38:9:66,9,0
chrXIV	567668	.	A	G	12.04	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=38;Dels=0.00;FS=8.195;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=34.12;MQ0=3;MQRankSum=1.628;QD=0.32;ReadPosRankSum=1.628;SB=-1.088e+02	GT:AD:DP:GQ:PL	1/1:2,33:38:6:43,6,0
chrXIV	567669	.	A	G	278	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.281;DP=37;Dels=0.00;FS=15.729;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.45;MQ0=3;MQRankSum=0.256;QD=7.51;ReadPosRankSum=0.622;SB=-9.301e+01	GT:AD:DP:GQ:PL	1/1:3,34:37:42:311,42,0
chrXIV	567919	.	C	T	14.26	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DP=93;Dels=0.00;FS=46.804;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=26;MQRankSum=2.713;QD=0.15;ReadPosRankSum=-0.985;SB=-3.102e+00	GT:AD:DP:GQ:PL	0/1:29,64:93:14:44,0,14
chrXIV	567921	.	A	T	18.16	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.592;DP=92;Dels=0.00;FS=46.804;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=23.97;MQ0=25;MQRankSum=2.744;QD=0.20;ReadPosRankSum=-0.985;SB=-3.102e+00	GT:AD:DP:GQ:PL	0/1:28,64:92:14:48,0,14
chrXIV	567925	.	C	T	10.50	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;DP=97;Dels=0.00;FS=33.953;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=25;MQRankSum=2.242;QD=0.11;ReadPosRankSum=-2.415;SB=-3.102e+00	GT:AD:DP:GQ:PL	0/1:27,69:97:14:40,0,14
chrXIV	567928	.	T	C	11.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;DP=103;Dels=0.00;FS=31.160;HaplotypeScore=5.7215;MLEAC=1;MLEAF=0.500;MQ=24.70;MQ0=25;MQRankSum=-0.259;QD=0.11;ReadPosRankSum=2.279;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:33,69:103:36:41,0,36
chrXIV	567937	.	A	C	140.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;DP=102;Dels=0.00;FS=74.086;HaplotypeScore=72.2251;MLEAC=1;MLEAF=0.500;MQ=25.32;MQ0=21;MQRankSum=1.246;QD=1.37;ReadPosRankSum=0.285;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:26,76:102:70:170,0,70
chrXIV	567938	.	T	C	147.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=101;Dels=0.00;FS=74.086;HaplotypeScore=72.2251;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=20;MQRankSum=0.795;QD=1.46;ReadPosRankSum=0.893;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:25,76:101:64:177,0,64
chrXIV	567941	.	A	G	145.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;DP=100;Dels=0.00;FS=74.086;HaplotypeScore=62.1072;MLEAC=1;MLEAF=0.500;MQ=25.57;MQ0=19;MQRankSum=2.070;QD=1.45;ReadPosRankSum=1.599;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:23,77:100:68:175,0,68
chrXIV	567957	.	C	A	129.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;DP=79;Dels=0.00;FS=89.865;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=11;MQRankSum=1.594;QD=1.63;ReadPosRankSum=2.967;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:18,61:79:95:159,0,95
chrXIV	567960	.	G	C	114.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DP=79;Dels=0.00;FS=89.865;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.25;MQ0=11;MQRankSum=1.574;QD=1.44;ReadPosRankSum=1.635;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:18,61:79:92:144,0,92
chrXIV	567962	.	T	A	121.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;DP=78;Dels=0.00;FS=89.865;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=10;MQRankSum=2.119;QD=1.55;ReadPosRankSum=1.029;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:17,61:78:93:151,0,93
chrXIV	567964	.	G	A	124.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;DP=78;Dels=0.00;FS=89.865;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=10;MQRankSum=1.655;QD=1.59;ReadPosRankSum=1.130;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:17,61:78:76:154,0,76
chrXIV	567965	.	T	C	119.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;DP=78;Dels=0.00;FS=79.991;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=10;MQRankSum=1.109;QD=1.53;ReadPosRankSum=0.450;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:15,61:78:68:149,0,68
chrXIV	567979	.	T	G	128.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886;DP=57;Dels=0.00;FS=72.555;HaplotypeScore=135.3111;MLEAC=1;MLEAF=0.500;MQ=27.19;MQ0=6;MQRankSum=-0.541;QD=2.25;ReadPosRankSum=0.015;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:12,45:57:99:158,0,107
chrXIV	567993	.	C	A	81.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;DP=79;Dels=0.00;FS=83.040;HaplotypeScore=194.0903;MLEAC=1;MLEAF=0.500;MQ=28.89;MQ0=3;MQRankSum=0.283;QD=1.03;ReadPosRankSum=1.846;SB=-2.750e+00	GT:AD:DP:GQ:PL	0/1:70,8:79:82:111,0,82
chrXIV	567997	.	C	T	42.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;DP=69;Dels=0.03;FS=31.455;HaplotypeScore=8.5207;MLEAC=1;MLEAF=0.500;MQ=32.12;MQ0=2;MQRankSum=2.187;QD=0.61;ReadPosRankSum=-3.479;SB=-6.518e-03	GT:AD:DP:GQ:PL	0/1:59,6:67:72:72,0,229
chrXIV	568008	.	G	A	471	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=13.1755;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;QD=6.54;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:57:504,57,0
chrXIV	568045	.	T	A	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299;DP=80;Dels=0.00;FS=5.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;MQRankSum=1.689;QD=14.15;ReadPosRankSum=1.689;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1165,126,0
chrXIV	568046	.	T	C	1080	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559;DP=80;Dels=0.00;FS=5.414;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.28;MQ0=0;MQRankSum=1.689;QD=13.50;ReadPosRankSum=1.689;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1113,126,0
chrXIV	568164	.	A	T	1125	filter	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.57;MQ0=9;QD=13.89;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1158,132,0
chrXIV	568362	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.049;DP=70;Dels=0.00;FS=8.875;HaplotypeScore=2.6124;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;MQRankSum=1.834;QD=17.13;ReadPosRankSum=3.277;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:4,66:70:99:1232,141,0
chrXIV	568368	.	T	G	1239	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.05;MQ0=0;QD=18.49;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1272,144,0
chrXIV	568547	.	A	G	805	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=20.12;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:96:838,96,0
chrXIV	568589	.	C	T	1176	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.19;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1209,132,0
chrXIV	568618	.	A	C	1278	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.97;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1311,147,0
chrXIV	568837	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1280,147,0
chrXIV	568887	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.25;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1372,159,0
chrXIV	568967	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=60;Dels=0.00;FS=7.709;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.544;QD=19.80;ReadPosRankSum=2.368;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1221,141,0
chrXIV	569371	.	G	A	1575	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.18;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1608,174,0
chrXIV	569942	.	C	T	482	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=6;QD=10.95;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:57:515,57,0
chrXIV	569961	.	G	C,T	226.22	filter	AC=1,1;AF=0.500,0.500;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=18.87;MQ0=5;QD=5.80;SB=-1.272e+02	GT:AD:DP:GQ:PL	1/2:0,12,27:39:40:286,70,40,216,0,207
chrXIV	569968	.	C	A	192.11	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;DP=40;Dels=0.00;FS=73.638;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.92;MQ0=4;MQRankSum=3.743;QD=4.80;ReadPosRankSum=0.481;SB=-1.411e+01	GT:AD:DP:GQ:PL	0/1:27,13:40:13:222,0,13
chrXIV	570002	.	G	A	209.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.144;DP=44;Dels=0.00;FS=98.848;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.81;MQ0=0;MQRankSum=3.632;QD=4.75;ReadPosRankSum=-0.136;SB=-1.198e+00	GT:AD:DP:GQ:PL	1/1:33,11:44:8:241,8,0
chrXIV	570020	.	C	T	193.01	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.66;MQ0=0;QD=4.83;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:27:226,27,0
chrXIV	570034	.	C	A	201.01	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=0;QD=5.74;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:27:234,27,0
chrXIV	570162	.	G	C	46.97	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.58;MQ0=3;QD=2.04;SB=-2.621e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:9:79,9,0
chrXIV	570167	.	T	C	48.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=25;Dels=0.00;FS=25.855;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.17;MQ0=3;MQRankSum=-1.913;QD=1.96;ReadPosRankSum=2.679;SB=-2.621e+01	GT:AD:DP:GQ:PL	1/1:3,22:25:9:81,9,0
chrXIV	570276	.	A	G	55.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;DP=58;Dels=0.00;FS=7.156;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=19.99;MQ0=30;MQRankSum=-0.540;QD=0.95;ReadPosRankSum=0.746;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,22:58:85:85,0,232
chrXIV	570382	.	A	G	71.61	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.22;MQ0=1;QD=1.88;SB=-1.816e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:12:104,12,0
chrXIV	570409	.	T	C	291	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=25.60;MQ0=5;MQRankSum=0.212;QD=6.33;ReadPosRankSum=2.330;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:2,44:46:36:324,36,0
chrXIV	570447	.	G	A	354.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.718;DP=58;Dels=0.00;FS=8.003;HaplotypeScore=1.5810;MLEAC=1;MLEAF=0.500;MQ=26.42;MQ0=6;MQRankSum=1.753;QD=6.10;ReadPosRankSum=0.410;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:27,31:58:99:384,0,176
chrXIV	570461	.	G	A	575	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.62;MQ0=5;QD=10.45;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,55:55:69:608,69,0
chrXIV	570509	.	T	C	397	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=25.59;MQ0=8;QD=9.23;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,43:43:48:430,48,0
chrXIV	570569	.	C	T	37.08	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=17.26;MQ0=7;MQRankSum=-0.868;QD=1.61;ReadPosRankSum=-1.519;SB=0.439	GT:AD:DP:GQ:PL	0/1:5,18:23:15:67,0,15
chrXIV	570574	.	G	A	52.97	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=20.00;MQ0=4;QD=2.21;SB=-8.463e-01	GT:AD:DP:GQ:PL	1/1:0,22:24:9:85,9,0
chrXIV	570597	.	G	A	84.51	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=7;QD=3.02;SB=-5.205e-01	GT:AD:DP:GQ:PL	1/1:0,28:28:12:117,12,0
chrXIV	570599	.	C	T	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.53;MQ0=9;MQRankSum=-0.670;QD=0.43;ReadPosRankSum=-0.478;SB=0.036	GT:AD:DP:GQ:PL	0/1:9,22:31:41:43,0,41
chrXIV	570609	.	A	G	98.26	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.89;MQ0=15;QD=2.73;SB=-2.723e-01	GT:AD:DP:GQ:PL	1/1:0,36:36:15:131,15,0
chrXIV	570645	.	C	T	519	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=21.83;MQ0=17;QD=8.37;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:60:552,60,0
chrXIV	570674	.	C	A	432.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DP=67;Dels=0.00;FS=2.402;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=26.93;MQ0=15;MQRankSum=2.269;QD=6.45;ReadPosRankSum=-0.454;SB=-1.940e+02	GT:AD:DP:GQ:PL	0/1:26,41:67:99:462,0,222
chrXIV	570750	.	A	G	99.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;DP=81;Dels=0.00;FS=4.136;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=40.52;MQ0=7;MQRankSum=-4.720;QD=1.22;ReadPosRankSum=3.677;SB=-7.601e+01	GT:AD:DP:GQ:PL	0/1:58,21:81:99:129,0,1014
chrXIV	570761	.	C	T	1542	filter	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.51;MQ0=7;QD=20.03;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1575,171,0
chrXIV	570777	.	G	A	301.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.359;DP=100;Dels=0.00;FS=4.272;HaplotypeScore=3.2819;MLEAC=1;MLEAF=0.500;MQ=39.13;MQ0=7;MQRankSum=-5.523;QD=3.01;ReadPosRankSum=-2.224;SB=-1.540e+02	GT:AD:DP:GQ:PL	0/1:67,33:100:99:331,0,1158
chrXIV	570890	.	G	A	695.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.070;DP=105;Dels=0.00;FS=5.500;HaplotypeScore=6.3851;MLEAC=1;MLEAF=0.500;MQ=38.69;MQ0=7;MQRankSum=-0.181;QD=6.62;ReadPosRankSum=-0.552;SB=-1.560e+02	GT:AD:DP:GQ:PL	0/1:62,43:105:99:725,0,882
chrXIV	570955	.	T	C	651	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.832;DP=54;Dels=0.00;FS=2.980;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=6;MQRankSum=1.316;QD=12.06;ReadPosRankSum=0.697;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:3,51:54:78:684,78,0
chrXIV	570986	.	T	C	537	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=28.25;MQ0=8;QD=10.13;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:66:570,66,0
chrXIV	571020	.	G	A	288.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.347;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=27.49;MQ0=10;MQRankSum=-1.090;QD=6.70;ReadPosRankSum=-1.299;SB=-1.780e+02	GT:AD:DP:GQ:PL	0/1:15,27:43:73:318,0,73
chrXIV	571049	.	G	A	350	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=14;QD=9.72;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:42:383,42,0
chrXIV	571056	.	A	C	91.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;DP=45;Dels=0.00;FS=6.872;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=29.58;MQ0=14;MQRankSum=-3.346;QD=2.02;ReadPosRankSum=-1.237;SB=-6.101e+01	GT:AD:DP:GQ:PL	0/1:29,16:45:99:121,0,247
chrXIV	571166	.	T	C	725.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.488;DP=126;Dels=0.00;FS=6.792;HaplotypeScore=9.0405;MLEAC=1;MLEAF=0.500;MQ=34.58;MQ0=0;MQRankSum=-1.761;QD=5.75;ReadPosRankSum=1.190;SB=-2.820e+02	GT:AD:DP:GQ:PL	0/1:71,55:126:99:755,0,1111
chrXIV	571168	.	T	C	760.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.905;DP=122;Dels=0.00;FS=9.891;HaplotypeScore=8.2518;MLEAC=1;MLEAF=0.500;MQ=34.80;MQ0=0;MQRankSum=-1.982;QD=6.23;ReadPosRankSum=1.332;SB=-3.060e+02	GT:AD:DP:GQ:PL	0/1:68,54:122:99:790,0,1022
chrXIV	571170	.	G	A	719.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.975;DP=121;Dels=0.00;FS=10.131;HaplotypeScore=8.2518;MLEAC=1;MLEAF=0.500;MQ=34.81;MQ0=1;MQRankSum=-2.799;QD=5.94;ReadPosRankSum=1.473;SB=-2.840e+02	GT:AD:DP:GQ:PL	0/1:67,53:121:99:749,0,832
chrXIV	571276	.	T	C	99.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;DP=45;Dels=0.00;FS=2.561;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=41.26;MQ0=3;MQRankSum=-1.745;QD=2.20;ReadPosRankSum=-1.230;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:31,14:45:99:129,0,392
chrXIV	571308	.	A	G	272	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.261;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.8528;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=3;MQRankSum=0.788;QD=10.88;ReadPosRankSum=1.261;SB=-8.563e-03	GT:AD:DP:GQ:PL	1/1:4,21:25:36:305,36,0
chrXIV	571312	.	A	G	169.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.98;MQ0=3;MQRankSum=-1.736;QD=9.39;ReadPosRankSum=1.504;SB=-3.878e-02	GT:AD:DP:GQ:PL	1/1:1,17:18:24:202,24,0
chrXIV	571314	.	A	G	188.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=3;QD=11.06;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:3,14:17:27:221,27,0
chrXIV	571316	.	A	G	165.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.64;MQ0=3;QD=9.71;SB=-3.878e-02	GT:AD:DP:GQ:PL	1/1:3,14:17:24:198,24,0
chrXIV	571318	.	C	A	200.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=2;QD=12.50;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:2,14:16:27:233,27,0
chrXIV	571320	.	A	G	194.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.37;MQ0=2;QD=12.13;SB=-2.272e-02	GT:AD:DP:GQ:PL	1/1:2,14:16:27:227,27,0
chrXIV	571328	.	T	A	198.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.67;MQ0=3;QD=8.25;SB=-4.402e+01	GT:AD:DP:GQ:PL	1/1:1,23:24:27:231,27,0
chrXIV	571343	.	T	C	173.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=24;Dels=0.00;FS=6.021;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=21.68;MQ0=4;MQRankSum=0.000;QD=7.21;ReadPosRankSum=1.561;SB=-4.704e+01	GT:AD:DP:GQ:PL	1/1:2,22:24:24:206,24,0
chrXIV	571347	.	C	T	197.01	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.92;MQ0=4;QD=8.57;SB=-7.902e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:27:230,27,0
chrXIV	571380	.	G	A	155.06	filter	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=19.32;MQ0=10;QD=5.35;SB=-1.011e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:21:188,21,0
chrXIV	571440	.	C	A	174.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=17.42;MQ0=17;MQRankSum=-0.717;QD=2.95;ReadPosRankSum=0.257;SB=-7.101e+01	GT:AD:DP:GQ:PL	0/1:25,34:59:66:204,0,66
chrXIV	571502	.	T	C	362.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=16.23;MQ0=27;MQRankSum=2.231;QD=3.69;ReadPosRankSum=1.055;SB=-7.001e+01	GT:AD:DP:GQ:PL	0/1:52,46:98:67:392,0,67
chrXIV	571535	.	C	G	525	filter	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7912;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=30;QD=6.10;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,84:86:63:558,63,0
chrXIV	571562	.	G	C	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;DP=58;Dels=0.00;FS=2.006;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=15.84;MQ0=21;MQRankSum=-2.302;QD=0.21;ReadPosRankSum=-0.094;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:29,25:58:42:42,0,200
chrXIV	571707	.	T	C	511	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=17;QD=11.88;SB=-9.501e+01	GT:AD:DP:GQ:PL	1/1:0,43:43:63:544,63,0
chrXIV	571751	.	G	A	1043	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=9;QD=17.68;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1076,114,0
chrXIV	571754	.	T	A	164.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=39.96;MQ0=9;MQRankSum=-1.898;QD=2.83;ReadPosRankSum=-2.083;SB=-1.320e+02	GT:AD:DP:GQ:PL	0/1:38,20:58:99:194,0,545
chrXIV	571757	.	G	A	210.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;DP=60;Dels=0.00;FS=2.496;HaplotypeScore=4.0706;MLEAC=1;MLEAF=0.500;MQ=40.86;MQ0=7;MQRankSum=-1.694;QD=3.50;ReadPosRankSum=-1.923;SB=-1.780e+02	GT:AD:DP:GQ:PL	0/1:37,22:60:99:240,0,563
chrXIV	571766	.	C	A	578.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.211;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3272;MLEAC=1;MLEAF=0.500;MQ=42.24;MQ0=6;MQRankSum=1.296;QD=8.89;ReadPosRankSum=0.161;SB=-1.640e+02	GT:AD:DP:GQ:PL	0/1:25,40:65:99:608,0,294
chrXIV	571793	.	A	G	1166	filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=13;QD=14.95;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1199,135,0
chrXIV	571839	.	G	A	355.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=26;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.101;SB=-6.801e+01	GT:AD:DP:GQ:PL	0/1:32,42:74:99:385,0,343
chrXIV	571841	.	C	T	972	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=26;QD=13.14;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1005,108,0
chrXIV	571876	.	T	C	254.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=26;MQRankSum=0.567;QD=4.03;ReadPosRankSum=1.150;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:37,25:63:99:284,0,309
chrXIV	571889	.	T	C	633	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.91;MQ0=26;QD=10.38;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,61:61:75:666,75,0
chrXIV	571935	.	A	G	102.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.46;MQ0=20;MQRankSum=1.264;QD=2.68;ReadPosRankSum=-0.609;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:21,17:38:99:132,0,159
chrXIV	571940	.	T	C	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.21;MQ0=19;MQRankSum=-1.867;QD=0.70;ReadPosRankSum=1.333;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:16,17:33:53:53,0,114
chrXIV	571968	.	T	C	97.26	filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.55;MQ0=15;QD=3.89;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,25:25:15:130,15,0
chrXIV	571992	.	T	C	47.97	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.46;MQ0=8;QD=2.67;SB=-5.272e+01	GT:AD:DP:GQ:PL	1/1:0,17:18:9:80,9,0
chrXIV	572008	.	G	A	50.97	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.01;MQ0=5;QD=3.00;SB=-1.087e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:9:83,9,0
chrXIV	572061	.	T	A	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;DP=58;Dels=0.00;FS=28.672;HaplotypeScore=7.3278;MLEAC=1;MLEAF=0.500;MQ=28.95;MQ0=14;MQRankSum=-2.600;QD=0.21;ReadPosRankSum=1.931;SB=-1.366e-03	GT:AD:DP:GQ:PL	0/1:38,20:58:42:42,0,288
chrXIV	572070	.	C	T	61.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DP=71;Dels=0.00;FS=46.820;HaplotypeScore=6.4036;MLEAC=1;MLEAF=0.500;MQ=31.42;MQ0=15;MQRankSum=-2.781;QD=0.86;ReadPosRankSum=-0.600;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:43,28:71:91:91,0,409
chrXIV	572097	.	C	A	291.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.917;DP=115;Dels=0.00;FS=51.650;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=35.48;MQ0=19;MQRankSum=-3.458;QD=2.53;ReadPosRankSum=-1.544;SB=-6.601e+01	GT:AD:DP:GQ:PL	0/1:62,52:115:99:321,0,658
chrXIV	572102	.	T	A	302.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;DP=119;Dels=0.00;FS=53.308;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=36.25;MQ0=19;MQRankSum=-3.317;QD=2.54;ReadPosRankSum=-0.524;SB=-1.130e+02	GT:AD:DP:GQ:PL	0/1:66,53:119:99:332,0,672
chrXIV	572137	.	A	G	717.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.296;DP=130;Dels=0.00;FS=18.948;HaplotypeScore=6.4196;MLEAC=1;MLEAF=0.500;MQ=40.88;MQ0=17;MQRankSum=2.228;QD=5.52;ReadPosRankSum=0.735;SB=-3.230e+02	GT:AD:DP:GQ:PL	0/1:67,63:130:99:747,0,604
chrXIV	572195	.	C	T	116.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;DP=67;Dels=0.00;FS=2.334;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=3;MQRankSum=-1.466;QD=1.73;ReadPosRankSum=-2.138;SB=-8.301e+01	GT:AD:DP:GQ:PL	0/1:45,21:67:99:146,0,599
chrXIV	572219	.	G	A	32.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;DP=63;Dels=0.00;FS=2.365;HaplotypeScore=4.8190;MLEAC=1;MLEAF=0.500;MQ=40.23;MQ0=3;MQRankSum=-3.745;QD=0.51;ReadPosRankSum=0.305;SB=-1.130e+02	GT:AD:DP:GQ:PL	0/1:43,19:63:62:62,0,732
chrXIV	572224	.	G	A	95.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;DP=60;Dels=0.00;FS=1.091;HaplotypeScore=4.8535;MLEAC=1;MLEAF=0.500;MQ=39.36;MQ0=2;MQRankSum=-4.341;QD=1.58;ReadPosRankSum=0.348;SB=-8.401e+01	GT:AD:DP:GQ:PL	0/1:41,19:60:99:125,0,684
chrXIV	572237	.	G	A	111.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;DP=51;Dels=0.00;FS=6.109;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=37.87;MQ0=2;MQRankSum=-3.285;QD=2.18;ReadPosRankSum=-0.315;SB=-5.901e+01	GT:AD:DP:GQ:PL	0/1:31,20:51:99:141,0,592
chrXIV	572251	.	A	C	477.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;DP=61;Dels=0.00;FS=9.154;HaplotypeScore=4.9099;MLEAC=1;MLEAF=0.500;MQ=37.38;MQ0=1;MQRankSum=3.203;QD=7.82;ReadPosRankSum=0.981;SB=-2.140e+02	GT:AD:DP:GQ:PL	0/1:27,33:61:99:507,0,249
chrXIV	572253	.	C	T	222.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.274;DP=61;Dels=0.00;FS=7.159;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=38.11;MQ0=1;MQRankSum=-2.615;QD=3.64;ReadPosRankSum=-1.134;SB=-1.710e+02	GT:AD:DP:GQ:PL	0/1:33,28:61:99:252,0,535
chrXIV	572261	.	G	A	425.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=59;Dels=0.00;FS=14.283;HaplotypeScore=2.6141;MLEAC=1;MLEAF=0.500;MQ=37.27;MQ0=0;MQRankSum=2.922;QD=7.20;ReadPosRankSum=0.615;SB=-1.570e+02	GT:AD:DP:GQ:PL	0/1:28,31:59:99:455,0,341
chrXIV	572277	.	C	T	340.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;DP=53;Dels=0.00;FS=19.863;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=36.74;MQ0=0;MQRankSum=2.055;QD=6.42;ReadPosRankSum=-0.471;SB=-9.201e+01	GT:AD:DP:GQ:PL	0/1:27,26:53:99:370,0,321
chrXIV	572311	.	A	G	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;DP=32;Dels=0.00;FS=24.707;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=32.42;MQ0=1;MQRankSum=-0.661;QD=0.84;ReadPosRankSum=0.300;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:18,14:32:57:57,0,263
chrXIV	572330	.	C	T	305	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=3;QD=10.89;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:36:338,36,0
chrXIV	572374	.	G	A	65.42	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;DP=25;Dels=0.00;FS=4.393;HaplotypeScore=2.4715;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=13;MQRankSum=-0.791;QD=2.62;ReadPosRankSum=-1.423;SB=-3.163e+00	GT:AD:DP:GQ:PL	0/1:1,24:25:7:95,0,7
chrXIV	572516	.	T	C	383.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;DP=141;Dels=0.00;FS=7.720;HaplotypeScore=6.2982;MLEAC=1;MLEAF=0.500;MQ=41.26;MQ0=6;MQRankSum=-2.405;QD=2.72;ReadPosRankSum=1.045;SB=-1.800e+02	GT:AD:DP:GQ:PL	0/1:100,41:141:99:413,0,1848
chrXIV	572525	.	T	C	396.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.449;DP=135;Dels=0.00;FS=9.990;HaplotypeScore=4.0593;MLEAC=1;MLEAF=0.500;MQ=41.42;MQ0=4;MQRankSum=-2.710;QD=2.93;ReadPosRankSum=3.207;SB=-1.780e+02	GT:AD:DP:GQ:PL	0/1:95,39:135:99:426,0,1797
chrXIV	572529	.	C	T	2814	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=9.9956;MLEAC=2;MLEAF=1.00;MQ=41.39;MQ0=3;QD=21.16;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2847,312,0
chrXIV	572596	.	C	T	39.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;DP=59;Dels=0.00;FS=10.432;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=43.68;MQ0=0;MQRankSum=-2.968;QD=0.66;ReadPosRankSum=0.847;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,11:59:69:69,0,854
chrXIV	572597	.	T	C	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;DP=59;Dels=0.00;FS=10.432;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=43.68;MQ0=0;MQRankSum=-2.929;QD=0.73;ReadPosRankSum=0.866;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,11:59:73:73,0,851
chrXIV	572607	.	C	T	180.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.149;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=40.72;MQ0=0;MQRankSum=-2.392;QD=3.10;ReadPosRankSum=-1.557;SB=-1.010e+02	GT:AD:DP:GQ:PL	0/1:42,16:58:99:210,0,637
chrXIV	572643	.	A	G	63.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.909;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=37.97;MQ0=3;MQRankSum=-1.183;QD=1.37;ReadPosRankSum=2.436;SB=-3.901e+01	GT:AD:DP:GQ:PL	0/1:33,13:46:93:93,0,587
chrXIV	572678	.	C	T	196.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;DP=37;Dels=0.00;FS=2.928;HaplotypeScore=6.3094;MLEAC=1;MLEAF=0.500;MQ=37.59;MQ0=3;MQRankSum=0.604;QD=5.30;ReadPosRankSum=-2.363;SB=-1.000e+02	GT:AD:DP:GQ:PL	0/1:19,18:37:99:226,0,313
chrXIV	572753	.	C	A	45.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;DP=43;Dels=0.00;FS=1.960;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=37.08;MQ0=10;MQRankSum=-1.144;QD=1.05;ReadPosRankSum=-2.030;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,11:43:75:75,0,548
chrXIV	572997	.	T	C	213.01	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=11.83;SB=-2.327e-02	GT:AD:DP:GQ:PL	1/1:0,18:18:27:246,27,0
chrXIV	572998	.	C	T	206.01	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=11.45;SB=-2.327e-02	GT:AD:DP:GQ:PL	1/1:0,17:18:27:239,27,0
chrXIV	573274	.	T	C	178.03	filter	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=10.95;MQ0=47;QD=2.51;SB=-3.661e-02	GT:AD:DP:GQ:PL	1/1:28,42:71:24:211,24,0
chrXIV	573505	.	A	G	99.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.41;MQ0=15;MQRankSum=-0.453;QD=3.00;ReadPosRankSum=-1.540;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:13,20:33:99:129,0,161
chrXIV	573515	.	A	G	128.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.60;MQ0=11;MQRankSum=1.303;QD=3.76;ReadPosRankSum=2.238;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,12:34:99:158,0,133
chrXIV	573527	.	C	T	139.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=23.88;MQ0=4;MQRankSum=-1.391;QD=4.21;ReadPosRankSum=-0.872;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:12,21:33:99:169,0,186
chrXIV	573537	.	T	C	454	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=1;QD=13.76;SB=-6.534e-03	GT:AD:DP:GQ:PL	1/1:0,33:33:57:487,57,0
chrXIV	573568	.	G	C	318.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=24.34;MQ0=14;MQRankSum=-0.339;QD=5.58;ReadPosRankSum=2.249;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,33:57:99:348,0,331
chrXIV	573581	.	C	G	245.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=22.65;MQ0=23;MQRankSum=0.128;QD=3.95;ReadPosRankSum=1.528;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:32,30:62:99:275,0,288
chrXIV	573594	.	G	A	287.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.145;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3847;MLEAC=1;MLEAF=0.500;MQ=21.12;MQ0=34;MQRankSum=-0.830;QD=3.99;ReadPosRankSum=-0.861;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,37:72:99:317,0,254
chrXIV	573641	.	G	A	111.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.03;MQ0=51;MQRankSum=-0.634;QD=1.63;ReadPosRankSum=2.586;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:40,28:68:99:141,0,207
chrXIV	573662	.	C	T	399	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.08;MQ0=47;QD=6.44;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:45:432,45,0
chrXIV	573783	.	C	T	216.01	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.60;MQ0=25;QD=5.84;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,35:37:27:249,27,0
chrXIV	573939	.	A	C	503.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;DP=74;Dels=0.00;FS=71.201;HaplotypeScore=32.3278;MLEAC=1;MLEAF=0.500;MQ=40.33;MQ0=2;MQRankSum=1.975;QD=6.80;ReadPosRankSum=0.781;SB=-2.230e+02	GT:AD:DP:GQ:PL	0/1:30,44:74:99:533,0,239
chrXIV	573968	.	C	T	471.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.073;DP=57;Dels=0.00;FS=66.123;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=37.94;MQ0=4;MQRankSum=-0.510;QD=8.26;ReadPosRankSum=0.597;SB=-1.410e+02	GT:AD:DP:GQ:PL	0/1:16,40:57:79:501,0,79
chrXIV	573972	.	C	T	469.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;DP=56;Dels=0.00;FS=57.228;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=37.73;MQ0=6;MQRankSum=-0.788;QD=8.38;ReadPosRankSum=-0.012;SB=-1.540e+02	GT:AD:DP:GQ:PL	0/1:16,40:56:81:499,0,81
chrXIV	574001	.	A	C	99.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=31;Dels=0.00;FS=10.607;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.92;MQ0=8;MQRankSum=-1.734;QD=3.20;ReadPosRankSum=1.583;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:1,30:31:15:132,15,0
chrXIV	574012	.	C	T	190.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.456;DP=33;Dels=0.00;FS=13.979;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=24.87;MQ0=8;MQRankSum=1.595;QD=5.76;ReadPosRankSum=-1.733;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:9,24:33:24:223,24,0
chrXIV	574027	.	G	A	105.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DP=22;Dels=0.00;FS=3.680;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=23.65;MQ0=8;MQRankSum=1.488;QD=4.78;ReadPosRankSum=0.992;SB=-1.411e+02	GT:AD:DP:GQ:PL	1/1:9,13:22:15:138,15,0
chrXIV	574033	.	G	A	136.13	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.24;MQ0=8;QD=6.19;SB=-1.491e+02	GT:AD:DP:GQ:PL	1/1:8,14:22:18:169,18,0
chrXIV	574042	.	G	A	151.06	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.22;MQ0=7;QD=5.81;SB=-1.661e+02	GT:AD:DP:GQ:PL	1/1:7,19:26:21:184,21,0
chrXIV	574150	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=22.38;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1734,192,0
chrXIV	574190	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5750;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.09;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1399,159,0
chrXIV	574362	.	A	G	2206	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=21.42;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,98:103:99:2239,255,0
chrXIV	574682	.	C	T	2267	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.5576;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.01;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2300,246,0
chrXIV	574776	.	G	A	1490	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.41;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1523,168,0
chrXIV	575471	.	A	T	2421	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=117;Dels=0.00;FS=3.203;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.497;QD=20.69;ReadPosRankSum=0.467;SB=-1.471e+03	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2454,248,0
chrXIV	575525	.	C	T	2275	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.5270;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.50;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2308,258,0
chrXIV	575763	.	G	A	1859	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1892,207,0
chrXIV	575952	.	G	A	915	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=19.06;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:948,105,0
chrXIV	576018	.	G	A	983	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.27;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1016,114,0
chrXIV	576084	.	G	A	1941	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.57;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1974,216,0
chrXIV	576121	.	A	C	1797	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.39;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1830,207,0
chrXIV	576309	.	G	A	1085	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.04;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1118,123,0
chrXIV	576317	.	G	T	914	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.32;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:947,102,0
chrXIV	576383	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.60;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1186,135,0
chrXIV	576675	.	C	T	2998	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.2997;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=20.53;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,144:146:99:3031,327,0
chrXIV	577049	.	G	T	105.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=105.5047;MLEAC=1;MLEAF=0.500;MQ=39.46;MQ0=0;MQRankSum=0.485;QD=1.42;ReadPosRankSum=-5.366;SB=-9.007e+00	GT:AD:DP:GQ:PL	0/1:57,16:74:99:135,0,245
chrXIV	577052	.	A	G	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=37.0260;MLEAC=1;MLEAF=0.500;MQ=40.45;MQ0=0;MQRankSum=-0.313;QD=0.60;ReadPosRankSum=-4.229;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,11:77:76:76,0,342
chrXIV	577194	.	A	G	2665	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.38;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2698,309,0
chrXIV	577269	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;QD=17.24;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1274,150,0
chrXIV	577292	.	C	T	894	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=16.25;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:927,102,0
chrXIV	577297	.	G	T	752	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=13.43;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:87:785,87,0
chrXIV	577301	.	G	A	831	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=44.20;MQ0=0;QD=14.33;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:96:864,96,0
chrXIV	577325	.	T	C	871	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=45.04;MQ0=0;QD=14.76;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:904,102,0
chrXIV	577382	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.5459;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.15;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1405,159,0
chrXIV	577727	.	G	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.70;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1503,168,0
chrXIV	577754	.	C	T	1427	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.10;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1460,156,0
chrXIV	577824	.	C	A	971	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=14.71;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1004,108,0
chrXIV	577917	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.69;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1139,126,0
chrXIV	577988	.	G	A	1127	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.26;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,50:53:99:1160,129,0
chrXIV	578628	.	T	G	1698	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.4127;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.46;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1731,195,0
chrXIV	579044	.	T	A	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=64;Dels=0.00;FS=6.179;HaplotypeScore=9.7961;MLEAC=2;MLEAF=1.00;MQ=60.32;MQ0=0;MQRankSum=-0.508;QD=19.30;ReadPosRankSum=2.096;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:3,61:64:99:1268,135,0
chrXIV	579121	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=4.260;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.444;QD=21.37;ReadPosRankSum=1.660;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1059,120,0
chrXIV	579960	.	G	A	445	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.5981;MLEAC=2;MLEAF=1.00;MQ=35.07;MQ0=0;QD=5.71;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:54:478,54,0
chrXIV	579966	.	G	A	386	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=5.08;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:48:419,48,0
chrXIV	579972	.	G	A	414	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.81;MQ0=0;QD=5.05;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:51:447,51,0
chrXIV	579984	.	G	A	535	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=5.88;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:63:568,63,0
chrXIV	580005	.	A	G	521	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=6.43;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:63:554,63,0
chrXIV	580534	.	A	G	996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.380;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.147;QD=16.88;ReadPosRankSum=1.674;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1029,117,0
chrXIV	580610	.	C	T	1781	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.3339;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.47;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1814,201,0
chrXIV	581286	.	T	C	1900	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.170;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.315;QD=22.89;ReadPosRankSum=1.690;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1933,222,0
chrXIV	581472	.	G	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=22.42;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1378,150,0
chrXIV	581502	.	A	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=24.97;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1556,171,0
chrXIV	581872	.	C	T	1014	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=23.05;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1047,114,0
chrXIV	581894	.	A	C	1062	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.60;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1095,126,0
chrXIV	581924	.	C	A	1205	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6490;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=20.42;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:59:99:1238,135,0
chrXIV	582432	.	C	A	2954	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.72;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2987,324,0
chrXIV	582651	.	C	A	1704	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.85;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1737,189,0
chrXIV	582726	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.672;QD=17.69;ReadPosRankSum=1.691;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1537,171,0
chrXIV	582810	.	G	A	1717	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.27;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1750,189,0
chrXIV	582846	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.83;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2065,222,0
chrXIV	582944	.	A	G	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=-0.253;QD=21.52;ReadPosRankSum=1.690;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1798,201,0
chrXIV	583083	.	T	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.31;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1292,144,0
chrXIV	583481	.	G	T	2507	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.21;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2540,273,0
chrXIV	583620	.	T	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.74;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1609,180,0
chrXIV	583930	.	G	T	1144	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.19;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1177,126,0
chrXIV	584126	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.00;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1375,147,0
chrXIV	584635	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.89;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1464,168,0
chrXIV	584770	.	G	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.8380;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.73;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1550,168,0
chrXIV	585051	.	G	A	1974	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.93;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2007,219,0
chrXIV	585226	.	A	G	1764	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.1283;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.51;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1797,204,0
chrXIV	585292	.	G	A	1597	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.2078;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.48;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1630,183,0
chrXIV	585720	.	T	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.55;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1421,159,0
chrXIV	585962	.	C	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.27;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1777,195,0
chrXIV	585996	.	T	C	2054	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=19.56;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2087,237,0
chrXIV	586002	.	G	A	2294	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.67;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2327,252,0
chrXIV	586230	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=22.42;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1468,162,0
chrXIV	586448	.	T	A	1959	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.05;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1992,219,0
chrXIV	586543	.	G	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=17.68;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1324,147,0
chrXIV	586546	.	C	G	1282	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=17.09;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:75:99:1315,147,0
chrXIV	586560	.	G	A	1439	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=17.55;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1472,165,0
chrXIV	586773	.	T	C	2295	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=19.45;SB=-1.470e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2328,261,0
chrXIV	586794	.	A	G	2137	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.61;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2170,237,0
chrXIV	586871	.	C	T	1944	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.5174;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.60;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1977,216,0
chrXIV	587725	.	G	A	705	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=15.00;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:81:738,81,0
chrXIV	588085	.	T	G	1005	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.71;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1038,114,0
chrXIV	588114	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=18.78;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1235,129,0
chrXIV	588859	.	T	C	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=3.010;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.575;QD=19.67;ReadPosRankSum=1.680;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1331,153,0
chrXIV	588903	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.25;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1274,141,0
chrXIV	588959	.	T	C	1630	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.03;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1663,186,0
chrXIV	589185	.	C	G	1473	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1506,171,0
chrXIV	589356	.	T	C	1257	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=15.71;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1290,141,0
chrXIV	589484	.	C	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.29;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1950,210,0
chrXIV	589622	.	A	T	2295	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.28;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2328,252,0
chrXIV	589664	.	A	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.98;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1851,201,0
chrXIV	589893	.	G	A	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.1293;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=1.155;QD=20.70;ReadPosRankSum=-0.885;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1896,201,0
chrXIV	589946	.	A	T	1894	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=98;Dels=0.00;FS=3.740;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.661;QD=19.33;ReadPosRankSum=0.732;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1927,210,0
chrXIV	590833	.	T	C	1634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;DP=81;Dels=0.00;FS=5.358;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;MQRankSum=0.272;QD=20.17;ReadPosRankSum=3.281;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:4,77:81:99:1667,189,0
chrXIV	590903	.	T	C	2145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.9462;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.503;QD=20.24;ReadPosRankSum=1.699;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2178,246,0
chrXIV	590927	.	C	T	2183	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.5424;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=21.40;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2216,243,0
chrXIV	591058	.	C	T	1928	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0423;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=20.29;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1961,213,0
chrXIV	591189	.	A	C	1307	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.15;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1340,153,0
chrXIV	591210	.	G	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.68;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1588,177,0
chrXIV	591230	.	C	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.64;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1622,180,0
chrXIV	591245	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.834;QD=17.93;ReadPosRankSum=1.689;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1485,165,0
chrXIV	591334	.	A	T	2255	SnpCluster	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.64;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2288,246,0
chrXIV	591335	.	T	C	2155	SnpCluster	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=18.11;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2188,246,0
chrXIV	591344	.	G	A	2360	SnpCluster	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=17.48;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2393,267,0
chrXIV	591390	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.01;FS=4.150;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.366;QD=15.58;ReadPosRankSum=1.632;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:1,103:105:99:1685,186,0
chrXIV	591420	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=16.74;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1305,150,0
chrXIV	591433	.	T	C	1015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;MQRankSum=-0.879;QD=15.15;ReadPosRankSum=1.626;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1048,117,0
chrXIV	591460	.	A	G	909	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=14.66;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:942,111,0
chrXIV	591502	.	G	A	684	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=18.00;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:78:717,78,0
chrXIV	591556	.	T	C	739	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=19.97;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:87:772,87,0
chrXIV	591601	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.79;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,50:53:99:1029,117,0
chrXIV	591830	.	C	T	1254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.842;DP=69;Dels=0.00;FS=7.318;HaplotypeScore=3.5402;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=1.878;QD=18.17;ReadPosRankSum=2.307;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1287,138,0
chrXIV	592102	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.84;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1679,183,0
chrXIV	592518	.	A	G	1277	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.60;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1310,147,0
chrXIV	592657	.	T	C	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=4.649;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.445;QD=19.11;ReadPosRankSum=1.683;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1371,156,0
chrXIV	592909	.	T	C	1316	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.490;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.491;QD=19.35;ReadPosRankSum=1.681;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1349,150,0
chrXIV	593099	.	T	C	1311	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.8014;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.21;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1344,156,0
chrXIV	593213	.	C	T	2128	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.13;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2161,237,0
chrXIV	593575	.	T	C	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=90;Dels=0.00;FS=3.522;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.308;QD=19.80;ReadPosRankSum=1.694;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1815,201,0
chrXIV	593736	.	T	C	2036	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.88;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2069,234,0
chrXIV	593883	.	T	C	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.058;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;MQRankSum=-1.402;QD=19.99;ReadPosRankSum=1.691;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1732,195,0
chrXIV	594246	.	G	C	1102	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.95;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1135,129,0
chrXIV	594474	.	G	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.8425;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.40;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1638,180,0
chrXIV	594531	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.33;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1441,165,0
chrXIV	594860	.	A	C	1969	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.88;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2002,228,0
chrXIV	595123	.	C	T	2031	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.08;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2064,222,0
chrXIV	595364	.	A	G	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=82;Dels=0.00;FS=3.736;HaplotypeScore=11.9762;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.711;QD=17.10;ReadPosRankSum=1.688;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,78:82:99:1435,165,0
chrXIV	595434	.	T	C	3621.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.748;QD=22.35;ReadPosRankSum=1.711;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:1,161:162:99:3621,399,0
chrXIV	595549	.	A	T	2493	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.26;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2526,273,0
chrXIV	595591	.	A	G	1556	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.804;DP=78;Dels=0.00;FS=12.557;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=1.303;QD=19.95;ReadPosRankSum=2.382;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1589,183,0
chrXIV	595762	.	G	A	2282	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=19.50;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2315,255,0
chrXIV	595893	.	T	A	1758	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.53;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1791,195,0
chrXIV	596172	.	T	C	1550	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.87;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1583,177,0
chrXIV	596175	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=19.49;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1573,174,0
chrXIV	596346	.	G	A	1089	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.4334;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=21.35;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1122,123,0
chrXIV	596487	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=17.53;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1260,138,0
chrXIV	596700	.	A	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.14;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1472,165,0
chrXIV	596826	.	C	T	1023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=3.874;HaplotypeScore=7.5223;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-0.312;QD=16.50;ReadPosRankSum=1.108;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1056,114,0
chrXIV	597333	.	T	C	2114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=98;Dels=0.00;FS=2.607;HaplotypeScore=6.5453;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-0.214;QD=21.57;ReadPosRankSum=2.324;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:99:2147,240,0
chrXIV	597474	.	A	G	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=61;Dels=0.00;FS=2.847;HaplotypeScore=5.1295;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=-0.679;QD=18.36;ReadPosRankSum=2.368;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:2,58:61:99:1153,132,0
chrXIV	598012	.	T	C	1282	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.85;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1315,150,0
chrXIV	598176	.	C	T	1003	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=4;QD=20.47;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1036,114,0
chrXIV	598229	.	T	G	160.06	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=35.6087;MLEAC=2;MLEAF=1.00;MQ=26.42;MQ0=8;QD=3.14;SB=-1.931e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:21:193,21,0
chrXIV	598433	.	T	C	213.19	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.313;DP=39;Dels=0.00;FS=14.548;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=19.64;MQ0=17;MQRankSum=2.585;QD=5.47;ReadPosRankSum=0.862;SB=-6.820e+01	GT:AD:DP:GQ:PL	1/1:13,26:39:8:245,8,0
chrXIV	598446	.	G	A	205.01	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.63;MQ0=17;QD=4.77;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:27:238,27,0
chrXIV	598499	.	T	C	280.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.076;DP=52;Dels=0.00;FS=34.358;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=23.44;MQ0=19;MQRankSum=2.841;QD=5.39;ReadPosRankSum=0.965;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:15,37:52:15:313,15,0
chrXIV	598508	.	G	A	287.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=45;Dels=0.00;FS=18.304;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=24.03;MQ0=16;MQRankSum=1.678;QD=6.38;ReadPosRankSum=0.387;SB=-2.729e-01	GT:AD:DP:GQ:PL	1/1:10,35:45:15:320,15,0
chrXIV	598511	.	G	A	245.79	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=47;Dels=0.00;FS=17.993;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=18;MQRankSum=0.580;QD=5.23;ReadPosRankSum=0.401;SB=-7.983e-01	GT:AD:DP:GQ:PL	1/1:11,34:47:10:278,10,0
chrXIV	598535	.	T	C	265.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=54;Dels=0.00;FS=13.979;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.77;MQ0=29;MQRankSum=1.456;QD=4.92;ReadPosRankSum=1.040;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:18,36:54:12:298,12,0
chrXIV	598567	.	G	A	162.06	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.17;MQ0=44;QD=2.70;SB=-7.470e-02	GT:AD:DP:GQ:PL	1/1:0,60:60:21:195,21,0
chrXIV	598588	.	C	T	52.97	filter	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.98;MQ0=47;QD=0.96;SB=-9.474e-01	GT:AD:DP:GQ:PL	1/1:33,22:55:9:85,9,0
chrXIV	598635	.	C	T	200.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DP=66;Dels=0.00;FS=5.641;HaplotypeScore=3.1000;MLEAC=1;MLEAF=0.500;MQ=20.44;MQ0=33;MQRankSum=0.917;QD=3.03;ReadPosRankSum=1.478;SB=-9.901e+01	GT:AD:DP:GQ:PL	0/1:47,19:66:99:230,0,180
chrXIV	598648	.	G	C	188.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DP=60;Dels=0.00;FS=4.913;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=22.44;MQ0=22;MQRankSum=0.615;QD=3.13;ReadPosRankSum=1.569;SB=-9.001e+01	GT:AD:DP:GQ:PL	0/1:42,18:60:99:218,0,285
chrXIV	598661	.	C	G	294.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;DP=68;Dels=0.00;FS=4.102;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=24.17;MQ0=17;MQRankSum=1.759;QD=4.32;ReadPosRankSum=-0.839;SB=-1.770e+02	GT:AD:DP:GQ:PL	0/1:43,24:68:99:324,0,351
chrXIV	598702	.	G	A	318.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.596;DP=75;Dels=0.00;FS=14.236;HaplotypeScore=4.1647;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=10;MQRankSum=0.546;QD=4.24;ReadPosRankSum=-0.182;SB=-8.501e+01	GT:AD:DP:GQ:PL	0/1:47,28:75:99:348,0,621
chrXIV	598714	.	T	C	589.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.056;DP=79;Dels=0.00;FS=14.256;HaplotypeScore=4.1212;MLEAC=1;MLEAF=0.500;MQ=22.11;MQ0=19;MQRankSum=-2.045;QD=7.46;ReadPosRankSum=0.068;SB=-3.440e+02	GT:AD:DP:GQ:PL	0/1:29,50:79:99:619,0,309
chrXIV	598724	.	T	C	264.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;DP=74;Dels=0.00;FS=12.582;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=19;MQRankSum=2.091;QD=3.57;ReadPosRankSum=-0.404;SB=-9.801e+01	GT:AD:DP:GQ:PL	0/1:42,30:74:99:294,0,511
chrXIV	598862	.	T	C	302.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=19.20;MQ0=29;MQRankSum=-0.349;QD=3.78;ReadPosRankSum=0.537;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:38,40:80:99:332,0,338
chrXIV	598904	.	T	C	257.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.399;DP=101;Dels=0.00;FS=3.748;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=17.17;MQ0=37;MQRankSum=0.041;QD=2.54;ReadPosRankSum=-0.109;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:59,42:101:99:287,0,460
chrXIV	598922	.	A	G	139.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.287;DP=110;Dels=0.00;FS=2.570;HaplotypeScore=4.1126;MLEAC=1;MLEAF=0.500;MQ=16.65;MQ0=41;MQRankSum=-0.448;QD=1.26;ReadPosRankSum=-0.864;SB=-5.201e+01	GT:AD:DP:GQ:PL	0/1:67,43:110:99:169,0,526
chrXIV	598955	.	A	G	124.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;DP=111;Dels=0.00;FS=15.901;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=17.03;MQ0=44;MQRankSum=-1.050;QD=1.12;ReadPosRankSum=-0.740;SB=-8.874e+01	GT:AD:DP:GQ:PL	0/1:66,44:111:99:154,0,555
chrXIV	598979	.	T	C	557.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;DP=92;Dels=0.00;FS=13.053;HaplotypeScore=3.3449;MLEAC=1;MLEAF=0.500;MQ=16.94;MQ0=40;MQRankSum=2.011;QD=6.05;ReadPosRankSum=-1.867;SB=-3.389e+01	GT:AD:DP:GQ:PL	0/1:31,60:92:39:587,0,39
chrXIV	599087	.	C	T	175.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;DP=40;Dels=0.00;FS=5.518;HaplotypeScore=1.7820;MLEAC=1;MLEAF=0.500;MQ=16.49;MQ0=19;MQRankSum=-1.746;QD=4.38;ReadPosRankSum=-0.493;SB=-1.308e+02	GT:AD:DP:GQ:PL	0/1:12,28:40:41:205,0,41
chrXIV	599232	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=15.99;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1664,189,0
chrXIV	599314	.	G	A	560	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.629;DP=55;Dels=0.00;FS=2.409;HaplotypeScore=5.4970;MLEAC=2;MLEAF=1.00;MQ=25.50;MQ0=11;MQRankSum=2.293;QD=10.18;ReadPosRankSum=1.738;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:13,42:55:66:593,66,0
chrXIV	599321	.	A	G	386	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=8.6469;MLEAC=2;MLEAF=1.00;MQ=25.53;MQ0=11;MQRankSum=2.438;QD=8.98;ReadPosRankSum=3.211;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:14,29:43:48:419,48,0
chrXIV	599322	.	G	T	311	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.725;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=8.6469;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=11;MQRankSum=1.775;QD=7.40;ReadPosRankSum=3.675;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:14,28:42:39:344,39,0
chrXIV	599368	.	T	A	409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DP=31;Dels=0.00;FS=4.210;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=27.71;MQ0=2;MQRankSum=1.614;QD=13.19;ReadPosRankSum=0.896;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:48:442,48,0
chrXIV	599414	.	G	A	423	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=27.76;MQ0=6;MQRankSum=1.614;QD=12.09;ReadPosRankSum=-0.538;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:2,33:35:51:456,51,0
chrXIV	599441	.	T	C	368	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=15.4641;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=9;QD=13.14;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:45:401,45,0
chrXIV	599476	.	G	T	371.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;DP=36;Dels=0.00;FS=11.957;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=31.70;MQ0=5;MQRankSum=0.858;QD=10.31;ReadPosRankSum=1.518;SB=-1.750e+02	GT:AD:DP:GQ:PL	0/1:12,24:36:99:401,0,164
chrXIV	599550	.	T	C	254	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.44;MQ0=4;MQRankSum=-1.735;QD=11.55;ReadPosRankSum=1.542;SB=-5.299e+01	GT:AD:DP:GQ:PL	1/1:1,21:22:33:287,33,0
chrXIV	599551	.	G	A	152.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;DP=22;Dels=0.00;FS=9.874;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=24.44;MQ0=4;MQRankSum=-1.189;QD=6.91;ReadPosRankSum=0.962;SB=-5.401e+01	GT:AD:DP:GQ:PL	0/1:6,16:22:66:182,0,66
chrXIV	599612	.	T	G	19.81	LowQual;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.82;MQ0=0;QD=1.32;SB=-2.780e+01	GT:AD:DP:GQ:PL	1/1:0,14:15:6:51,6,0
chrXIV	599622	.	G	A	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=0;QD=1.85;SB=-2.980e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:6:59,6,0
chrXIV	599723	.	G	A	156.06	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.32;MQ0=7;QD=6.79;SB=-2.207e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:21:189,21,0
chrXIV	599727	.	A	G	131.98	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;DP=26;Dels=0.00;FS=6.662;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=24.03;MQ0=7;MQRankSum=0.492;QD=5.08;ReadPosRankSum=-0.070;SB=-1.901e+01	GT:AD:DP:GQ:PL	0/1:5,20:26:3:161,0,3
chrXIV	599736	.	A	G	179.54	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.857;DP=30;Dels=0.00;FS=3.680;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=24.28;MQ0=9;MQRankSum=0.899;QD=5.98;ReadPosRankSum=-0.659;SB=-2.491e+01	GT:AD:DP:GQ:PL	1/1:5,24:30:2:209,2,0
chrXIV	599886	.	T	G	232.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;DP=65;Dels=0.00;FS=11.225;HaplotypeScore=5.6262;MLEAC=1;MLEAF=0.500;MQ=43.22;MQ0=7;MQRankSum=-3.854;QD=3.57;ReadPosRankSum=0.850;SB=-1.110e+02	GT:AD:DP:GQ:PL	0/1:45,19:65:99:262,0,665
chrXIV	599887	.	A	G	244.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;DP=65;Dels=0.00;FS=11.225;HaplotypeScore=5.6262;MLEAC=1;MLEAF=0.500;MQ=43.22;MQ0=7;MQRankSum=-3.322;QD=3.75;ReadPosRankSum=0.918;SB=-1.180e+02	GT:AD:DP:GQ:PL	0/1:46,19:65:99:274,0,598
chrXIV	599892	.	G	T	245.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.151;DP=66;Dels=0.00;FS=14.732;HaplotypeScore=5.8040;MLEAC=1;MLEAF=0.500;MQ=43.34;MQ0=7;MQRankSum=-2.987;QD=3.71;ReadPosRankSum=1.766;SB=-8.301e+01	GT:AD:DP:GQ:PL	0/1:48,18:66:99:275,0,739
chrXIV	599916	.	C	T	627.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=53;Dels=0.00;FS=20.696;HaplotypeScore=5.7622;MLEAC=1;MLEAF=0.500;MQ=41.51;MQ0=5;MQRankSum=2.245;QD=11.83;ReadPosRankSum=-0.244;SB=-1.180e+02	GT:AD:DP:GQ:PL	0/1:16,37:53:99:657,0,209
chrXIV	599940	.	T	C	428.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;DP=36;Dels=0.00;FS=31.897;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=39.85;MQ0=2;MQRankSum=2.829;QD=11.89;ReadPosRankSum=2.541;SB=-4.787e+01	GT:AD:DP:GQ:PL	0/1:13,23:36:99:458,0,109
chrXIV	599974	.	A	G	74.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;DP=21;Dels=0.00;FS=25.407;HaplotypeScore=1.7621;MLEAC=1;MLEAF=0.500;MQ=35.18;MQ0=3;MQRankSum=-2.177;QD=3.52;ReadPosRankSum=1.999;SB=-2.948e+00	GT:AD:DP:GQ:PL	0/1:12,9:21:99:104,0,203
chrXIV	599988	.	C	T	157.06	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.78;MQ0=1;QD=15.71;SB=-8.294e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:21:190,21,0
chrXIV	599998	.	G	A	90.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DP=9;Dels=0.00;FS=6.021;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.07;MQ0=1;MQRankSum=0.747;QD=10.05;ReadPosRankSum=0.747;SB=-2.729e+01	GT:AD:DP:GQ:PL	0/1:2,7:9:7:120,0,7
chrXIV	600014	.	C	T	94.26	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.11;MQ0=1;QD=11.78;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:1,7:8:15:127,15,0
chrXIV	600027	.	C	T	198.01	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.95;MQ0=1;QD=14.14;SB=-1.239e+02	GT:AD:DP:GQ:PL	1/1:1,13:14:27:231,27,0
chrXIV	600064	.	T	C	177.03	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=2;QD=17.70;SB=-2.797e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:24:210,24,0
chrXIV	600071	.	A	T	175.03	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.76;MQ0=2;QD=17.50;SB=-2.897e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:24:208,24,0
chrXIV	600101	.	C	T	96.26	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.46;MQ0=4;QD=9.63;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,10:10:15:129,15,0
chrXIV	600149	.	A	T	120.13	filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.25;MQ0=12;QD=6.67;SB=-4.963e+01	GT:AD:DP:GQ:PL	1/1:11,7:18:18:153,18,0
chrXIV	600155	.	A	G	144.06	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.71;MQ0=13;QD=6.86;SB=-4.781e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:21:177,21,0
chrXIV	600165	.	C	G	161.03	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.79;MQ0=18;QD=5.96;SB=-7.177e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:24:194,24,0
chrXIV	600188	.	G	A	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;DP=58;Dels=0.00;FS=3.820;HaplotypeScore=9.1713;MLEAC=1;MLEAF=0.500;MQ=37.49;MQ0=21;MQRankSum=-2.742;QD=0.31;ReadPosRankSum=-0.845;SB=-8.007e+00	GT:AD:DP:GQ:PL	0/1:38,19:58:48:48,0,539
chrXIV	600190	.	A	T	555.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;DP=61;Dels=0.00;FS=3.350;HaplotypeScore=8.3826;MLEAC=1;MLEAF=0.500;MQ=36.98;MQ0=21;MQRankSum=2.775;QD=9.10;ReadPosRankSum=2.632;SB=-3.080e+02	GT:AD:DP:GQ:PL	0/1:19,40:61:77:585,0,77
chrXIV	600236	.	G	A	499.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.615;DP=102;Dels=0.00;FS=1.803;HaplotypeScore=3.4034;MLEAC=1;MLEAF=0.500;MQ=46.63;MQ0=12;MQRankSum=-2.507;QD=4.89;ReadPosRankSum=0.651;SB=-2.750e+02	GT:AD:DP:GQ:PL	0/1:63,38:102:99:529,0,1067
chrXIV	600259	.	A	G	1948	filter	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1936;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=6;QD=19.68;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1981,219,0
chrXIV	600272	.	G	A	496.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.628;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9882;MLEAC=1;MLEAF=0.500;MQ=45.61;MQ0=6;MQRankSum=-1.226;QD=5.70;ReadPosRankSum=1.610;SB=-2.120e+02	GT:AD:DP:GQ:PL	0/1:52,35:87:99:526,0,840
chrXIV	600283	.	A	G	1397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=72;Dels=0.00;FS=4.346;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.31;MQ0=3;MQRankSum=1.376;QD=19.40;ReadPosRankSum=1.681;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1430,162,0
chrXIV	600311	.	A	G	101.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;DP=53;Dels=0.00;FS=13.487;HaplotypeScore=4.0214;MLEAC=1;MLEAF=0.500;MQ=37.39;MQ0=11;MQRankSum=-1.694;QD=1.91;ReadPosRankSum=-1.641;SB=-6.001e+01	GT:AD:DP:GQ:PL	0/1:33,20:53:99:131,0,531
chrXIV	600316	.	T	C	448.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;DP=54;Dels=0.00;FS=10.782;HaplotypeScore=7.1761;MLEAC=1;MLEAF=0.500;MQ=36.25;MQ0=13;MQRankSum=1.527;QD=8.30;ReadPosRankSum=1.555;SB=-1.430e+02	GT:AD:DP:GQ:PL	0/1:20,34:54:99:478,0,158
chrXIV	600362	.	A	G	311	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.71;MQ0=20;QD=8.18;SB=-1.849e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:39:344,39,0
chrXIV	600375	.	A	G	67.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;DP=41;Dels=0.00;FS=5.021;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=17.99;MQ0=26;MQRankSum=-0.556;QD=1.63;ReadPosRankSum=-0.150;SB=-1.301e+01	GT:AD:DP:GQ:PL	0/1:19,22:41:97:97,0,125
chrXIV	600410	.	G	A	233	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.14;MQ0=19;QD=7.06;SB=-1.559e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:30:266,30,0
chrXIV	600458	.	T	C	513	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=23.21;MQ0=8;MQRankSum=0.328;QD=11.40;ReadPosRankSum=1.639;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:60:546,60,0
chrXIV	600480	.	G	A	485	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.55;MQ0=0;QD=12.44;SB=-9.301e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:57:518,57,0
chrXIV	600485	.	G	T	439	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.528;DP=39;Dels=0.00;FS=1.662;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.11;MQ0=1;MQRankSum=3.977;QD=11.26;ReadPosRankSum=0.310;SB=-5.400e+01	GT:AD:DP:GQ:PL	1/1:16,23:39:35:472,35,0
chrXIV	600500	.	C	T	560	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.99;MQ0=4;QD=11.67;SB=-6.001e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:66:593,66,0
chrXIV	600533	.	A	G	254.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;DP=62;Dels=0.00;FS=1.661;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=25.05;MQ0=11;MQRankSum=-0.766;QD=4.10;ReadPosRankSum=0.233;SB=-8.901e+01	GT:AD:DP:GQ:PL	0/1:20,42:62:99:284,0,232
chrXIV	600544	.	A	G	766	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=29.86;MQ0=12;QD=11.78;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:93:799,93,0
chrXIV	600689	.	C	G	329.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DP=81;Dels=0.00;FS=1.012;HaplotypeScore=7.0981;MLEAC=1;MLEAF=0.500;MQ=35.02;MQ0=23;MQRankSum=3.169;QD=4.06;ReadPosRankSum=-0.008;SB=-1.860e+02	GT:AD:DP:GQ:PL	0/1:41,39:81:99:359,0,461
chrXIV	600716	.	G	C	126.13	filter	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=15.53;MQ0=29;QD=2.93;SB=-5.063e+01	GT:AD:DP:GQ:PL	1/1:0,42:43:18:159,18,0
chrXIV	600749	.	A	G	122.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=1;MLEAF=0.500;MQ=17.33;MQ0=26;MQRankSum=1.303;QD=2.49;ReadPosRankSum=0.106;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:22,25:49:99:152,0,125
chrXIV	600811	.	G	T	239.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.450;DP=92;Dels=0.00;FS=26.136;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=27.23;MQ0=14;MQRankSum=-5.532;QD=2.60;ReadPosRankSum=2.063;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:52,40:92:99:269,0,642
chrXIV	600876	.	A	C	517.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;DP=106;Dels=0.00;FS=6.323;HaplotypeScore=7.9535;MLEAC=1;MLEAF=0.500;MQ=37.01;MQ0=5;MQRankSum=-1.181;QD=4.88;ReadPosRankSum=1.917;SB=-3.440e+02	GT:AD:DP:GQ:PL	0/1:52,54:106:99:547,0,416
chrXIV	600908	.	A	G	78.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=41.10;MQ0=3;MQRankSum=-2.281;QD=0.80;ReadPosRankSum=-2.245;SB=-4.401e+01	GT:AD:DP:GQ:PL	0/1:73,25:98:99:108,0,1088
chrXIV	600923	.	A	T	104.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;DP=105;Dels=0.00;FS=11.384;HaplotypeScore=13.0883;MLEAC=1;MLEAF=0.500;MQ=42.68;MQ0=1;MQRankSum=-2.802;QD=0.99;ReadPosRankSum=-0.316;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,21:105:99:134,0,1231
chrXIV	600928	.	G	C	1291.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.974;DP=106;Dels=0.00;FS=12.274;HaplotypeScore=12.0950;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=4;MQRankSum=4.397;QD=12.18;ReadPosRankSum=-0.226;SB=-7.630e+02	GT:AD:DP:GQ:PL	0/1:19,85:106:90:1321,0,90
chrXIV	600931	.	T	C	68.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;DP=103;Dels=0.00;FS=18.267;HaplotypeScore=11.3063;MLEAC=1;MLEAF=0.500;MQ=43.54;MQ0=3;MQRankSum=-4.213;QD=0.66;ReadPosRankSum=0.722;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,17:103:98:98,0,1295
chrXIV	600933	.	G	T	22.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340;DP=99;Dels=0.00;FS=15.983;HaplotypeScore=4.8190;MLEAC=1;MLEAF=0.500;MQ=44.24;MQ0=3;MQRankSum=-3.964;QD=0.22;ReadPosRankSum=0.710;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,17:99:52:52,0,1310
chrXIV	600935	.	T	C	75.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;DP=98;Dels=0.00;FS=15.980;HaplotypeScore=7.3698;MLEAC=1;MLEAF=0.500;MQ=44.83;MQ0=3;MQRankSum=-4.725;QD=0.77;ReadPosRankSum=0.599;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:81,17:98:99:105,0,1333
chrXIV	600937	.	T	C	74.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;DP=97;Dels=0.00;FS=15.625;HaplotypeScore=7.3698;MLEAC=1;MLEAF=0.500;MQ=45.06;MQ0=3;MQRankSum=-5.069;QD=0.76;ReadPosRankSum=0.432;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:80,17:97:99:104,0,1357
chrXIV	600943	.	T	C	50.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;DP=106;Dels=0.00;FS=23.301;HaplotypeScore=12.4631;MLEAC=1;MLEAF=0.500;MQ=45.42;MQ0=3;MQRankSum=-5.675;QD=0.47;ReadPosRankSum=-0.842;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,22:106:80:80,0,1323
chrXIV	600975	.	G	A	70.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.956;DP=92;Dels=0.00;FS=26.004;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=44.35;MQ0=3;MQRankSum=-4.717;QD=0.76;ReadPosRankSum=0.043;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,22:92:99:100,0,923
chrXIV	601081	.	C	T	65.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;DP=31;Dels=0.00;FS=14.211;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=22.40;MQ0=11;MQRankSum=-1.713;QD=2.10;ReadPosRankSum=-0.972;SB=-6.149e+01	GT:AD:DP:GQ:PL	0/1:13,17:31:33:95,0,33
chrXIV	601083	.	A	G	64.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;DP=30;Dels=0.00;FS=9.631;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.44;MQ0=10;MQRankSum=-1.571;QD=2.13;ReadPosRankSum=-0.698;SB=-8.368e+01	GT:AD:DP:GQ:PL	0/1:13,17:30:32:94,0,32
chrXIV	601085	.	A	G	64.11	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DP=29;Dels=0.00;FS=9.631;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=22.82;MQ0=9;MQRankSum=-1.746;QD=2.21;ReadPosRankSum=-0.611;SB=-8.270e+01	GT:AD:DP:GQ:PL	0/1:13,16:29:13:94,0,13
chrXIV	601112	.	T	G	217.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=5;MQRankSum=0.528;QD=7.75;ReadPosRankSum=1.583;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:1,26:28:27:250,27,0
chrXIV	601195	.	T	G	783.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.445;DP=111;Dels=0.00;FS=18.450;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=30.97;MQ0=6;MQRankSum=3.046;QD=7.05;ReadPosRankSum=-0.190;SB=-4.000e+02	GT:AD:DP:GQ:PL	0/1:51,60:111:99:813,0,515
chrXIV	601231	.	C	T	351.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.519;DP=83;Dels=0.00;FS=16.141;HaplotypeScore=12.3216;MLEAC=1;MLEAF=0.500;MQ=34.19;MQ0=9;MQRankSum=-0.768;QD=4.23;ReadPosRankSum=0.387;SB=-2.180e+02	GT:AD:DP:GQ:PL	0/1:43,38:83:99:381,0,468
chrXIV	601255	.	A	G	661	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=10;MQRankSum=-0.802;QD=10.33;ReadPosRankSum=2.313;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:78:694,78,0
chrXIV	601259	.	G	T	390.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;DP=64;Dels=0.00;FS=5.921;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=39.42;MQ0=10;MQRankSum=3.225;QD=6.09;ReadPosRankSum=0.637;SB=-6.400e+01	GT:AD:DP:GQ:PL	0/1:21,43:64:99:420,0,113
chrXIV	601265	.	A	G	720	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=41.59;MQ0=8;MQRankSum=1.405;QD=11.80;ReadPosRankSum=1.667;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:84:753,84,0
chrXIV	601361	.	C	T	487	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;DP=36;Dels=0.00;FS=3.388;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=11;MQRankSum=1.589;QD=13.53;ReadPosRankSum=-0.867;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:6,29:36:57:520,57,0
chrXIV	601364	.	A	G	406	filter	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.85;MQ0=11;QD=12.30;SB=-1.510e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:48:439,48,0
chrXIV	601379	.	A	C	226	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=11;QD=9.83;SB=-7.695e+01	GT:AD:DP:GQ:PL	1/1:0,22:23:30:259,30,0
chrXIV	601465	.	G	A	367	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=7;QD=10.19;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:42:400,42,0
chrXIV	601469	.	C	T	384	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=28.74;MQ0=7;QD=10.11;SB=-1.930e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:45:417,45,0
chrXIV	601544	.	T	C	149.08	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.999;DP=33;Dels=0.00;FS=9.165;HaplotypeScore=4.1814;MLEAC=1;MLEAF=0.500;MQ=23.05;MQ0=9;MQRankSum=-0.057;QD=4.52;ReadPosRankSum=2.227;SB=-7.902e+01	GT:AD:DP:GQ:PL	1/1:2,29:33:21:182,21,0
chrXIV	601606	.	G	A	181.03	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=17.14;MQ0=14;QD=5.32;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:24:214,24,0
chrXIV	601642	.	T	C	304	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=38;Dels=0.00;FS=6.854;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=25.66;MQ0=10;MQRankSum=-0.045;QD=8.00;ReadPosRankSum=2.275;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:2,36:38:39:337,39,0
chrXIV	601652	.	G	A	51.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.567;DP=40;Dels=0.00;FS=6.207;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=34.48;MQ0=7;MQRankSum=-2.324;QD=1.28;ReadPosRankSum=0.748;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:27,13:40:81:81,0,280
chrXIV	601654	.	C	T	511	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=35.33;MQ0=6;QD=13.10;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:60:544,60,0
chrXIV	601682	.	G	A	189.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.789;DP=59;Dels=0.00;FS=1.210;HaplotypeScore=3.4334;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=8;MQRankSum=-0.799;QD=3.20;ReadPosRankSum=-2.744;SB=-6.801e+01	GT:AD:DP:GQ:PL	0/1:35,24:59:99:219,0,549
chrXIV	601790	.	C	T	663	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=3;QD=13.53;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:78:696,78,0
chrXIV	601804	.	C	T	305.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.201;DP=47;Dels=0.00;FS=38.014;HaplotypeScore=1.7480;MLEAC=1;MLEAF=0.500;MQ=32.04;MQ0=3;MQRankSum=2.190;QD=6.49;ReadPosRankSum=-2.060;SB=-6.006e+00	GT:AD:DP:GQ:PL	0/1:16,30:47:99:335,0,161
chrXIV	601842	.	A	G	432	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.72;MQ0=3;QD=7.71;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:51:465,51,0
chrXIV	601869	.	T	C	288	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.94;MQ0=2;QD=6.55;SB=-8.701e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:36:321,36,0
chrXIV	601975	.	T	C	223.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;DP=60;Dels=0.00;FS=4.837;HaplotypeScore=4.1379;MLEAC=1;MLEAF=0.500;MQ=20.91;MQ0=20;MQRankSum=-0.813;QD=3.72;ReadPosRankSum=-1.381;SB=-7.701e+01	GT:AD:DP:GQ:PL	0/1:27,32:60:99:253,0,257
chrXIV	602111	.	G	A	1084.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;DP=96;Dels=0.00;FS=95.974;HaplotypeScore=2.4932;MLEAC=1;MLEAF=0.500;MQ=54.38;MQ0=0;MQRankSum=2.681;QD=11.29;ReadPosRankSum=-1.833;SB=-2.000e+02	GT:AD:DP:GQ:PL	0/1:28,68:96:99:1114,0,319
chrXIV	602134	.	T	C	1541.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350;DP=119;Dels=0.00;FS=169.180;HaplotypeScore=9.0280;MLEAC=1;MLEAF=0.500;MQ=53.67;MQ0=0;MQRankSum=4.703;QD=12.95;ReadPosRankSum=1.744;SB=-1.310e+02	GT:AD:DP:GQ:PL	0/1:35,83:119:99:1571,0,357
chrXIV	602249	.	T	G	1013	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=0;QD=11.26;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1046,126,0
chrXIV	602250	.	C	T	596.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;DP=90;Dels=0.00;FS=165.323;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=32.88;MQ0=0;MQRankSum=-0.042;QD=6.62;ReadPosRankSum=0.941;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:17,72:90:99:626,0,212
chrXIV	602260	.	T	G	401.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;DP=82;Dels=0.00;FS=152.958;HaplotypeScore=2.5668;MLEAC=1;MLEAF=0.500;MQ=26.79;MQ0=0;MQRankSum=-2.544;QD=4.89;ReadPosRankSum=2.141;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:17,65:82:99:431,0,225
chrXIV	602262	.	T	A	307.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;DP=80;Dels=0.00;FS=139.762;HaplotypeScore=1.7781;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=0;MQRankSum=-3.270;QD=3.84;ReadPosRankSum=2.917;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:17,63:80:99:337,0,211
chrXIV	602277	.	A	G	260.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.941;DP=80;Dels=0.00;FS=135.067;HaplotypeScore=3.1982;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=2;MQRankSum=-2.371;QD=3.25;ReadPosRankSum=3.094;SB=-2.002e+01	GT:AD:DP:GQ:PL	0/1:15,65:80:99:290,0,119
chrXIV	602284	.	G	T	259.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;DP=76;Dels=0.00;FS=80.757;HaplotypeScore=3.2416;MLEAC=1;MLEAF=0.500;MQ=25.46;MQ0=4;MQRankSum=-1.141;QD=3.41;ReadPosRankSum=0.392;SB=-7.302e+01	GT:AD:DP:GQ:PL	0/1:11,65:76:99:289,0,114
chrXIV	602291	.	G	A	31.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;DP=81;Dels=0.00;FS=70.953;HaplotypeScore=3.9869;MLEAC=1;MLEAF=0.500;MQ=27.55;MQ0=5;MQRankSum=0.193;QD=0.38;ReadPosRankSum=0.675;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,12:81:61:61,0,379
chrXIV	602296	.	A	G	489	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=27.19;MQ0=8;QD=6.61;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:63:522,63,0
chrXIV	602396	.	A	G	81.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=40.5697;MLEAC=2;MLEAF=1.00;MQ=45.07;MQ0=1;MQRankSum=-0.069;QD=1.43;ReadPosRankSum=1.663;SB=-6.005e+02	GT:AD:DP:GQ:PL	1/1:1,49:57:12:114,12,0
chrXIV	602521	.	C	G	3168	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=19.20;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,163:165:99:3201,375,0
chrXIV	602658	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=12.9847;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;MQRankSum=-0.481;QD=15.37;ReadPosRankSum=1.684;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1155,129,0
chrXIV	602860	.	A	T	3353.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=4.328;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.709;QD=22.50;ReadPosRankSum=1.709;SB=-1.366e+03	GT:AD:DP:GQ:PL	1/1:1,148:149:99:3353,369,0
chrXIV	603545	.	A	G	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=3.217;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.370;QD=21.68;ReadPosRankSum=1.571;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1919,213,0
chrXIV	603709	.	G	A	2503	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.9515;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=17.50;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:2536,276,0
chrXIV	603842	.	C	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.20;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1744,189,0
chrXIV	604247	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.74;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1485,162,0
chrXIV	604471	.	A	G	398	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.53;MQ0=0;QD=18.95;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:48:431,48,0
chrXIV	604879	.	T	C	894	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=17.53;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:927,105,0
chrXIV	605032	.	C	G	961	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1713;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.86;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:994,111,0
chrXIV	605755	.	T	A	415	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.977;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.300;QD=18.86;ReadPosRankSum=2.216;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,20:22:51:448,51,0
chrXIV	605825	.	C	G	1852	filter	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.72;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1885,207,0
chrXIV	606035	.	C	T	220.01	filter	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.45;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,9:9:27:253,27,0
chrXIV	606872	.	G	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.0130;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.62;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1568,168,0
chrXIV	607577	.	A	G	2563	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.8291;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.68;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2596,294,0
chrXIV	611511	.	C	T	1720	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.00;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1753,186,0
chrXIV	612523	.	T	G	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.208;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.088;QD=18.42;ReadPosRankSum=1.208;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1617,161,0
chrXIV	612847	.	A	T	2098	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.195;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.407;QD=21.85;ReadPosRankSum=1.660;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2131,234,0
chrXIV	613192	.	C	G	2027	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.68;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2060,228,0
chrXIV	613268	.	G	A	2171	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=19.74;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2204,237,0
chrXIV	613306	.	T	C	2315	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.49;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2348,261,0
chrXIV	613373	.	C	T	2891	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.6080;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=23.13;SB=-1.705e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2924,315,0
chrXIV	613459	.	A	G	2036	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8754;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.89;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2069,231,0
chrXIV	613773	.	T	A	1797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=3.904;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.652;QD=20.66;ReadPosRankSum=1.692;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1830,195,0
chrXIV	614336	.	A	G	2288	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.43;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2321,264,0
chrXIV	614937	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.75;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1693,189,0
chrXIV	614988	.	A	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=21.13;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1491,165,0
chrXIV	615001	.	T	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.90;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1386,156,0
chrXIV	615141	.	A	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.7620;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=24.26;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1731,186,0
chrXIV	615302	.	G	C	1061	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=16.84;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1094,123,0
chrXIV	615305	.	A	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=17.55;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1156,132,0
chrXIV	615447	.	T	C	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=105;Dels=0.00;FS=3.052;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;MQRankSum=-0.012;QD=19.19;ReadPosRankSum=2.403;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:2,103:105:99:2048,234,0
chrXIV	615459	.	C	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=7.5671;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.31;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2157,246,0
chrXIV	615603	.	A	G	1030	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.46;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1063,120,0
chrXIV	615651	.	G	A	1016	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.62;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1049,114,0
chrXIV	615762	.	A	G	2087	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.74;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2120,234,0
chrXIV	615861	.	C	T	2533	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=16.3623;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.94;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2566,285,0
chrXIV	616020	.	C	T	1148	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1181,132,0
chrXIV	616166	.	A	G	2221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.446;DP=125;Dels=0.00;FS=2.982;HaplotypeScore=1.9788;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;MQRankSum=-0.128;QD=17.77;ReadPosRankSum=2.410;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:2,123:125:99:2254,246,0
chrXIV	616170	.	T	A	2155	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.97;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2188,240,0
chrXIV	617185	.	C	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=17.12;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1283,138,0
chrXIV	617231	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.00;FS=2.987;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.600;QD=20.47;ReadPosRankSum=2.369;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:2,59:62:99:1302,147,0
chrXIV	617376	.	G	T	1443	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.0704;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.91;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1476,171,0
chrXIV	617566	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.05;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1597,177,0
chrXIV	617594	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.16;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1681,192,0
chrXIV	617612	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=18.09;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1390,147,0
chrXIV	618073	.	A	G	1835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=7.934;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=1.130;QD=21.85;ReadPosRankSum=2.333;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1868,207,0
chrXIV	618448	.	A	G	2716	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.855;DP=132;Dels=0.00;FS=2.582;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.351;QD=20.58;ReadPosRankSum=2.947;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:3,129:132:99:2749,315,0
chrXIV	618475	.	G	A	2735	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=21.04;SB=-1.175e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2768,300,0
chrXIV	618548	.	G	A	2287	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5819;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.10;SB=-1.221e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2320,249,0
chrXIV	619135	.	G	C	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DP=55;Dels=0.00;FS=1.273;HaplotypeScore=5.7899;MLEAC=1;MLEAF=0.500;MQ=38.64;MQ0=0;MQRankSum=-1.578;QD=0.67;ReadPosRankSum=-5.321;SB=-2.601e+01	GT:AD:DP:GQ:PL	0/1:41,13:55:67:67,0,174
chrXIV	619143	.	G	A	208.01	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.7446;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=4.73;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:27:241,27,0
chrXIV	620369	.	T	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.41;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1322,150,0
chrXIV	620381	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.379;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;MQRankSum=0.890;QD=18.30;ReadPosRankSum=1.685;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1387,153,0
chrXIV	620528	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=11.9062;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.98;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1851,213,0
chrXIV	620819	.	G	A	1904	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.70;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1937,210,0
chrXIV	620981	.	T	C	1950	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.67;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1983,225,0
chrXIV	621080	.	T	C	2393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;DP=128;Dels=0.00;FS=8.577;HaplotypeScore=10.4908;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.144;QD=18.70;ReadPosRankSum=2.373;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:2,126:128:99:2426,276,0
chrXIV	622219	.	C	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.7809;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.16;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1202,129,0
chrXIV	622639	.	A	G	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.424;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.067;QD=21.08;ReadPosRankSum=1.687;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1656,192,0
chrXIV	622973	.	A	G	1947	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.88;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1980,216,0
chrXIV	623097	.	G	T	1726	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8566;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.17;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1759,195,0
chrXIV	623559	.	T	A	2417	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.66;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2450,267,0
chrXIV	624096	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.07;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1759,201,0
chrXIV	624279	.	C	T	2331	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6622;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.55;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2364,258,0
chrXIV	624946	.	C	T	2014	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.86;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2047,219,0
chrXIV	625428	.	T	C	1579	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.1694;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.24;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1612,180,0
chrXIV	625641	.	T	G	1260	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.66;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,57:61:99:1293,144,0
chrXIV	625861	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.75;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1435,156,0
chrXIV	626480	.	C	G	2173	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.40;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2206,252,0
chrXIV	626600	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.24;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1490,168,0
chrXIV	627905	.	G	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.03;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1760,189,0
chrXIV	628112	.	C	T	2460	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.88;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2493,270,0
chrXIV	628379	.	G	A	1601	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.27;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1634,177,0
chrXIV	628503	.	T	C	765	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.21;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:798,90,0
chrXIV	628716	.	G	A	682	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.43;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:78:715,78,0
chrXIV	628742	.	G	A	737	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=19.92;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:84:770,84,0
chrXIV	628743	.	A	G	742	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.05;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:84:775,84,0
chrXIV	628820	.	T	C	41.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-0.731;QD=8.39;ReadPosRankSum=0.731;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:1,4:5:9:74,9,0
chrXIV	628889	.	T	C	1658	filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.12;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1691,186,0
chrXIV	629035	.	T	C	882	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.21;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:99:915,105,0
chrXIV	629078	.	C	G	1067	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.71;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1100,126,0
chrXIV	629307	.	A	G	816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.260;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.477;QD=17.36;ReadPosRankSum=2.878;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:4,43:47:93:849,93,0
chrXIV	629464	.	C	T	1385	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=18.22;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1418,168,0
chrXIV	629775	.	C	T	691	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.36;MQ0=0;QD=23.03;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:724,78,0
chrXIV	629859	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.28;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1610,174,0
chrXIV	630417	.	T	C	1775	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.88;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1808,204,0
chrXIV	630600	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.67;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1485,168,0
chrXIV	631199	.	G	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.07;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1787,201,0
chrXIV	631514	.	T	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.33;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1078,120,0
chrXIV	631593	.	A	G	890	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=45;Dels=0.00;FS=3.002;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.72;MQ0=0;MQRankSum=1.019;QD=19.78;ReadPosRankSum=2.231;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:923,105,0
chrXIV	631782	.	G	A	1131	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=20.56;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1164,126,0
chrXIV	631792	.	T	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=18.33;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1133,126,0
chrXIV	632045	.	A	C	1365	filter	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=4;QD=17.50;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1398,159,0
chrXIV	632138	.	A	G	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.939;DP=83;Dels=0.00;FS=9.648;HaplotypeScore=74.4567;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=0;MQRankSum=1.106;QD=17.10;ReadPosRankSum=0.063;SB=-1.370e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1452,156,0
chrXIV	632163	.	G	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.08;MQ0=0;QD=15.07;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1088,117,0
chrXIV	632192	.	T	G	507	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=0;QD=10.35;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:60:540,60,0
chrXIV	632210	.	T	C	352	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.48;MQ0=0;QD=8.80;SB=-6.794e-03	GT:AD:DP:GQ:PL	1/1:0,40:40:45:385,45,0
chrXIV	632235	.	A	C	730	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=0;QD=15.87;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:46:84:763,84,0
chrXIV	632251	.	G	A	613	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=14.60;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:72:646,72,0
chrXIV	632268	.	G	T	465	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.46;MQ0=1;QD=12.24;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:1,37:38:57:498,57,0
chrXIV	632845	.	C	G	2016	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=23.72;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,81:85:99:2049,225,0
chrXIV	633286	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=18.09;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1299,141,0
chrXIV	633299	.	T	C	1133	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=16.66;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1166,132,0
chrXIV	633644	.	A	G	770	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.33;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:803,90,0
chrXIV	634010	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.12;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1744,192,0
chrXIV	634104	.	G	A	956	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:989,105,0
chrXIV	634319	.	T	G	1780	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.19;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1813,201,0
chrXIV	634336	.	C	T	1983	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=21.10;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2016,225,0
chrXIV	634407	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.88;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1902,213,0
chrXIV	635324	.	T	C	1758	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.32;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1791,198,0
chrXIV	635347	.	A	T	1821	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.017;QD=19.58;ReadPosRankSum=1.694;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1854,204,0
chrXIV	635450	.	A	G	2027	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.47;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2060,231,0
chrXIV	635465	.	T	G	1987	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.514;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=5.4549;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.202;QD=17.74;ReadPosRankSum=1.701;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,110:112:99:2020,225,0
chrXIV	635640	.	C	T	865	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.73;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:898,99,0
chrXIV	635788	.	C	G	2056	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=13.8298;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.77;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2089,231,0
chrXIV	635844	.	T	C	2285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=107;Dels=0.00;FS=3.762;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.408;QD=21.36;ReadPosRankSum=1.700;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2318,258,0
chrXIV	635919	.	G	A	2066	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.48;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2099,225,0
chrXIV	636137	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.26;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1747,189,0
chrXIV	636275	.	T	C	1775	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1808,204,0
chrXIV	636388	.	A	G	1485	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.16;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1518,171,0
chrXIV	636460	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.25;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1746,189,0
chrXIV	636563	.	G	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.2755;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.84;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1883,201,0
chrXIV	638398	.	G	A	1683	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.8826;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.14;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1716,186,0
chrXIV	639045	.	C	T	2128	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=20.27;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2161,240,0
chrXIV	639551	.	C	A	1768	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.64;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1801,195,0
chrXIV	639629	.	A	G	2004	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.09;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2037,231,0
chrXIV	639755	.	A	G	935	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.89;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:968,108,0
chrXIV	640393	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;DP=83;Dels=0.00;FS=3.022;HaplotypeScore=6.6387;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.067;QD=19.86;ReadPosRankSum=2.390;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:2,80:83:99:1681,189,0
chrXIV	640431	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.4455;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-0.650;QD=21.29;ReadPosRankSum=1.602;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1736,171,0
chrXIV	640932	.	T	C	1216	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.33;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1249,141,0
chrXIV	641101	.	C	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.44;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1577,174,0
chrXIV	641452	.	A	G	1643	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.039;QD=20.54;ReadPosRankSum=1.689;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1676,198,0
chrXIV	641892	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.679;QD=20.37;ReadPosRankSum=1.572;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1357,150,0
chrXIV	642812	.	G	C	764	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.83;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:90:797,90,0
chrXIV	643259	.	C	G	2357	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=22.88;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2390,276,0
chrXIV	643436	.	A	G	2320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.449;QD=20.90;ReadPosRankSum=1.701;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:2,109:111:99:2353,261,0
chrXIV	643585	.	C	T	2546	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.58;SB=-1.625e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2579,279,0
chrXIV	643599	.	A	G	2089	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.353;QD=19.34;ReadPosRankSum=1.700;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2122,243,0
chrXIV	644010	.	C	T	1782	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.47;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1815,198,0
chrXIV	644234	.	T	C	357	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.5771;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=4.35;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:45:390,45,0
chrXIV	644512	.	A	G	1635	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=20.44;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1668,189,0
chrXIV	644679	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.05;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1737,195,0
chrXIV	644752	.	C	T	2139	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.57;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2172,234,0
chrXIV	645174	.	A	G	1474	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.76;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1507,168,0
chrXIV	645361	.	G	T	568	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=12.91;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:66:601,66,0
chrXIV	645646	.	C	T	1158	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.44;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1191,126,0
chrXIV	645805	.	G	A	783	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.3613;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.66;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:90:816,90,0
chrXIV	646140	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.24;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1322,147,0
chrXIV	646157	.	A	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=19.03;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1479,165,0
chrXIV	646547	.	A	C	1571	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.0329;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=18.06;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1604,180,0
chrXIV	646799	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=17.90;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1089,123,0
chrXIV	646869	.	T	G	1543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=79;Dels=0.00;FS=2.981;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.983;QD=19.53;ReadPosRankSum=2.325;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1576,180,0
chrXIV	647124	.	A	G	2045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=93;Dels=0.00;FS=3.350;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.689;QD=21.99;ReadPosRankSum=1.695;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2078,234,0
chrXIV	647174	.	G	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=92.5240;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.97;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2006,219,0
chrXIV	647239	.	T	C	2020	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=17.12;SB=-1.464e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2053,231,0
chrXIV	648289	.	A	G	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=-0.058;QD=20.37;ReadPosRankSum=0.115;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1255,141,0
chrXIV	648349	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.22;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1108,123,0
chrXIV	648535	.	T	C	1217	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=18.16;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1250,141,0
chrXIV	648607	.	A	C	2082	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.13;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2115,234,0
chrXIV	648641	.	T	C	1962	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.10;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1995,225,0
chrXIV	648658	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;DP=87;Dels=0.00;FS=7.736;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=-0.269;QD=17.55;ReadPosRankSum=2.337;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1560,174,0
chrXIV	648754	.	G	A	2156	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.23;SB=-1.223e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2189,246,0
chrXIV	648908	.	T	C	3017	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=134;Dels=0.00;FS=3.789;HaplotypeScore=7.2992;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.732;QD=22.51;ReadPosRankSum=0.698;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:1,133:134:99:3050,342,0
chrXIV	648982	.	G	A	4159.01	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=24.61;SB=-1.795e+03	GT:AD:DP:GQ:PL	1/1:0,167:169:99:4159,456,0
chrXIV	649012	.	C	T	4240.01	PASS	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=6.8509;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=24.23;SB=-1.398e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:4240,456,0
chrXIV	649267	.	G	A	2161	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.4088;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.65;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2194,237,0
chrXIV	649517	.	C	T	1602	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.00;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1635,180,0
chrXIV	649796	.	A	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.25;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1746,189,0
chrXIV	650114	.	G	A	1100	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.6663;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.15;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1133,123,0
chrXIV	650269	.	G	A	1787	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.83;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1820,195,0
chrXIV	650366	.	A	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.06;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1776,204,0
chrXIV	650441	.	C	A	1876	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.60;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1909,207,0
chrXIV	650501	.	A	G	1391	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=4.578;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.525;QD=21.08;ReadPosRankSum=1.680;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1424,162,0
chrXIV	650568	.	T	C	1279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.010;HaplotypeScore=6.0771;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-1.155;QD=19.38;ReadPosRankSum=1.680;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1312,147,0
chrXIV	650627	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.90;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1642,186,0
chrXIV	650816	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=18.32;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1334,144,0
chrXIV	650921	.	A	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8957;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.24;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1168,132,0
chrXIV	650977	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.95;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1395,153,0
chrXIV	651098	.	T	C	1509	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.22;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1542,171,0
chrXIV	651197	.	G	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.90;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1172,129,0
chrXIV	651334	.	G	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.43;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1181,129,0
chrXIV	651361	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.9332;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.51;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1360,153,0
chrXIV	651680	.	A	G	856	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=21.40;SB=-1.850e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:889,99,0
chrXIV	651849	.	C	T	914	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=31.0479;MLEAC=2;MLEAF=1.00;MQ=40.40;MQ0=0;QD=14.74;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:947,108,0
chrXIV	651900	.	A	T	100.26	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=9.11;SB=-7.524e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:133,15,0
chrXIV	651906	.	A	G	90.26	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=8.21;SB=-7.724e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:15:123,15,0
chrXIV	652238	.	G	A	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.10;MQ0=0;QD=5.70;SB=-1.258e+00	GT:AD:DP:GQ:PL	1/1:0,4:4:6:54,6,0
chrXIV	652261	.	C	T	69.51	PASS	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=6.32;SB=-5.140e-01	GT:AD:DP:GQ:PL	1/1:0,11:11:12:102,12,0
chrXIV	652265	.	T	G	149.06	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=10.65;SB=-7.442e-02	GT:AD:DP:GQ:PL	1/1:0,14:14:21:182,21,0
chrXIV	652419	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.12;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1559,177,0
chrXIV	652476	.	G	A	1324	filter	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=24.98;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1357,147,0
chrXIV	652557	.	C	A	153.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.584;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=21.5906;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=1.605;QD=6.12;ReadPosRankSum=-3.291;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:13,12:25:99:183,0,121
chrXIV	652628	.	T	C	616	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.53;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:72:649,72,0
chrXIV	652651	.	A	T	795	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=19.39;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:828,90,0
chrXIV	652962	.	C	T	759	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=16.87;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:792,87,0
chrXIV	653385	.	T	C	580	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=16.11;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:69:613,69,0
chrXIV	653525	.	G	A	847	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.82;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:880,96,0
chrXIV	653542	.	T	A	863	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.76;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:896,96,0
chrXIV	653635	.	T	C	1211	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.25;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1244,141,0
chrXIV	653665	.	C	T	1503	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.86;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1536,168,0
chrXIV	654088	.	A	G	1198	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.0072;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=16.19;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1231,138,0
chrXIV	654325	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.14;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1069,117,0
chrXIV	654490	.	A	G	1269	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.83;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1302,147,0
chrXIV	654646	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=80.1653;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=17.68;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1783,195,0
chrXIV	654799	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.11;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1205,129,0
chrXIV	654835	.	T	C	1548	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.76;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1581,180,0
chrXIV	654949	.	C	T	1498	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=18.27;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1531,165,0
chrXIV	655138	.	C	T	1749	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.4558;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.32;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,98:101:99:1782,195,0
chrXIV	655174	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.85;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1336,153,0
chrXIV	655315	.	A	G	929	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-1.597;QD=18.22;ReadPosRankSum=1.664;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:962,108,0
chrXIV	655324	.	G	A	1025	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=16.80;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1058,117,0
chrXIV	655447	.	G	A	1704	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.78;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1737,189,0
chrXIV	655865	.	T	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.6228;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.01;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1630,183,0
chrXIV	655912	.	C	T	1247	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.63;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1280,141,0
chrXIV	655918	.	A	T	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=71;Dels=0.00;FS=8.178;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.191;QD=17.49;ReadPosRankSum=2.207;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1275,141,0
chrXIV	656020	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.17;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1432,162,0
chrXIV	656308	.	G	A	1546	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.08;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1579,177,0
chrXIV	656419	.	G	A	1065	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.02;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1098,120,0
chrXIV	656425	.	G	C	904	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=16.74;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:937,105,0
chrXIV	656560	.	A	G	1068	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=20.15;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1101,126,0
chrXIV	656566	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=19.79;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1082,117,0
chrXIV	656773	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=17.92;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1126,129,0
chrXIV	657606	.	A	C	1427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.326;QD=20.10;ReadPosRankSum=1.682;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1460,162,0
chrXIV	657871	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2035;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=18.46;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1399,153,0
chrXIV	657913	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=19.58;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1541,165,0
chrXIV	657946	.	A	G	1651	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-1.358;QD=22.01;ReadPosRankSum=1.685;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1684,183,0
chrXIV	658012	.	G	A	1231	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.85;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1264,138,0
chrXIV	658252	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.05;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1196,138,0
chrXIV	658306	.	T	A	1097	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;MQRankSum=-0.119;QD=18.91;ReadPosRankSum=1.673;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1130,120,0
chrXIV	658444	.	C	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.04;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1576,177,0
chrXIV	658624	.	C	T	1559	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.59;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1592,174,0
chrXIV	658675	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.07;MQ0=0;QD=19.91;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1088,120,0
chrXIV	658677	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=20.00;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1113,120,0
chrXIV	658861	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.34;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1731,192,0
chrXIV	658915	.	A	G	1621	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=81;Dels=0.00;FS=3.032;HaplotypeScore=5.9297;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;MQRankSum=-0.593;QD=20.01;ReadPosRankSum=2.389;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1654,189,0
chrXIV	659022	.	G	A	1645	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=21.36;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1678,183,0
chrXIV	659344	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=13.56;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:928,102,0
chrXIV	659350	.	A	G	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.81;MQ0=0;MQRankSum=-1.732;QD=14.04;ReadPosRankSum=1.682;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1002,114,0
chrXIV	659362	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.59;MQ0=0;QD=14.67;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1133,123,0
chrXIV	659386	.	A	T	882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;MQRankSum=0.066;QD=11.02;ReadPosRankSum=-0.460;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:85:915,85,0
chrXIV	659398	.	A	G	1016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.760;QD=12.39;ReadPosRankSum=1.605;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1049,120,0
chrXIV	659794	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.66;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1614,177,0
chrXIV	659821	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.76;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1665,186,0
chrXIV	659878	.	G	A	1605	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.61;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1638,180,0
chrXIV	659971	.	G	A	1419	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.7595;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.50;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1452,162,0
chrXIV	660538	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=15.95;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1293,147,0
chrXIV	660562	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=15.07;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:1555,177,0
chrXIV	661117	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0343;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=17.34;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,73:76:99:1351,147,0
chrXIV	661129	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=17.12;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1180,135,0
chrXIV	661923	.	G	A	1078	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=16.09;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1111,126,0
chrXIV	661928	.	G	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=16.41;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1165,126,0
chrXIV	662398	.	C	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=17.25;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1120,123,0
chrXIV	662512	.	C	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=20.71;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1255,135,0
chrXIV	662536	.	T	G	1035	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=17.84;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1068,123,0
chrXIV	662537	.	G	A	1128	SnpCluster	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=19.45;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1161,126,0
chrXIV	662542	.	C	T	1164	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=18.48;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1197,129,0
chrXIV	662586	.	A	G	902	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=14.79;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:935,105,0
chrXIV	662883	.	G	A	1490	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6254;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=16.56;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1523,168,0
chrXIV	662978	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=88;Dels=0.00;FS=3.212;HaplotypeScore=4.5416;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=1.024;QD=14.69;ReadPosRankSum=1.614;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1326,153,0
chrXIV	662982	.	A	G	1138	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=85;Dels=0.00;FS=6.389;HaplotypeScore=6.5247;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;MQRankSum=1.145;QD=13.39;ReadPosRankSum=2.218;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1171,132,0
chrXIV	664009	.	C	T	839	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.85;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:872,96,0
chrXIV	664058	.	A	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.77;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1330,153,0
chrXIV	664499	.	A	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=16.55;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1556,174,0
chrXIV	664887	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=7.3796;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.247;QD=18.61;ReadPosRankSum=1.662;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:945,102,0
chrXIV	664923	.	C	T	658	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.80;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:75:691,75,0
chrXIV	664998	.	A	C	1680	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=34.23;MQ0=0;QD=13.44;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:1713,189,0
chrXIV	665001	.	C	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=12.22;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,135:135:99:1683,177,0
chrXIV	665017	.	C	G	1534	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.4787;MLEAC=2;MLEAF=1.00;MQ=32.99;MQ0=0;QD=9.96;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:1567,180,0
chrXIV	665036	.	G	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=2.6421;MLEAC=2;MLEAF=1.00;MQ=34.62;MQ0=0;QD=10.02;SB=-1.650e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:1486,168,0
chrXIV	665056	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.7318;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;MQRankSum=-0.387;QD=10.42;ReadPosRankSum=1.274;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:1294,150,0
chrXIV	665064	.	T	A	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.5550;MLEAC=2;MLEAF=1.00;MQ=38.18;MQ0=0;MQRankSum=-1.576;QD=10.95;ReadPosRankSum=1.670;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:1249,138,0
chrXIV	665097	.	T	A	994	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.68;MQ0=0;QD=13.25;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1027,108,0
chrXIV	665108	.	T	C	824	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=14.98;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:857,99,0
chrXIV	665503	.	C	T	417	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=9.70;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:51:450,51,0
chrXIV	665506	.	A	G	417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;MQRankSum=0.650;QD=8.51;ReadPosRankSum=1.660;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:51:450,51,0
chrXIV	665889	.	G	A	1281	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.87;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1314,138,0
chrXIV	665969	.	A	C	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=3.765;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.682;QD=20.55;ReadPosRankSum=1.682;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1451,162,0
chrXIV	666127	.	C	T	1550	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.95;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1583,174,0
chrXIV	666445	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.97;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1228,141,0
chrXIV	666697	.	T	C	1558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.317;QD=21.94;ReadPosRankSum=1.635;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1591,177,0
chrXIV	667018	.	C	T	720	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5184;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=15.00;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:84:753,84,0
chrXIV	667216	.	C	T	736	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=16.36;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:87:769,87,0
chrXIV	667292	.	G	A	680	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=16.19;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:78:713,78,0
chrXIV	667419	.	A	G	1712	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=25.55;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1745,192,0
chrXIV	667485	.	A	G	758	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.45;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:93:791,93,0
chrXIV	667515	.	C	A	660	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.38;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:75:693,75,0
chrXIV	667530	.	T	A	757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.544;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=1.516;QD=19.92;ReadPosRankSum=2.761;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:3,35:38:90:790,90,0
chrXIV	667685	.	T	C	1509	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=21.87;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1542,174,0
chrXIV	667737	.	C	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=21.47;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2030,219,0
chrXIV	667749	.	C	T	1869	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=20.77;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1902,207,0
chrXIV	667911	.	G	A	1156	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=17.78;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1189,135,0
chrXIV	667971	.	T	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=17.59;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1317,141,0
chrXIV	668126	.	T	C	320	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.2659;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;QD=5.82;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:42:353,42,0
chrXIV	668135	.	C	T	371	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.3542;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=6.51;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:48:404,48,0
chrXIV	668179	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.367;DP=59;Dels=0.00;FS=6.558;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=0.691;QD=15.34;ReadPosRankSum=2.367;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:2,57:59:99:938,105,0
chrXIV	668876	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.00;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1033,111,0
chrXIV	669030	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.080;QD=20.54;ReadPosRankSum=1.679;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1368,153,0
chrXIV	669144	.	T	C	960	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5865;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.78;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:993,111,0
chrXIV	669261	.	G	A	1113	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.82;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1146,123,0
chrXIV	669360	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=77;Dels=0.00;FS=2.959;HaplotypeScore=9.0664;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.568;QD=20.91;ReadPosRankSum=2.320;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1643,186,0
chrXIV	669563	.	A	G	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=69;Dels=0.00;FS=4.011;HaplotypeScore=4.9865;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;MQRankSum=-1.376;QD=20.75;ReadPosRankSum=1.681;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1465,162,0
chrXIV	669840	.	T	C	1401	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.19;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1434,159,0
chrXIV	669924	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.412;QD=17.45;ReadPosRankSum=1.279;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1499,162,0
chrXIV	669930	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=15.92;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1386,156,0
chrXIV	669943	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.053;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=0.097;QD=15.66;ReadPosRankSum=1.654;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1427,165,0
chrXIV	669967	.	A	C	1477	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=15.23;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,95:97:99:1510,174,0
chrXIV	670369	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.49;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1768,198,0
chrXIV	670370	.	A	G	1697	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=19.07;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1730,189,0
chrXIV	670615	.	C	A	1541	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.66;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1574,171,0
chrXIV	671139	.	A	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.48;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1610,174,0
chrXIV	671188	.	T	C	1397	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.40;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1430,159,0
chrXIV	671311	.	G	A	1363	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.93;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1396,156,0
chrXIV	671317	.	A	G	1437	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.16;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1470,165,0
chrXIV	671629	.	G	A	2662	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=8.9081;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.98;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2695,294,0
chrXIV	671826	.	C	T	2500	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.4468;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=23.15;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2533,273,0
chrXIV	672220	.	T	C	2259	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=21.31;SB=-1.129e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2292,255,0
chrXIV	672239	.	C	T	1941	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=21.10;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1974,213,0
chrXIV	672281	.	T	C	512	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=5.1203;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=14.63;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:63:545,63,0
chrXIV	672756	.	C	T	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;MQRankSum=-1.196;QD=21.81;ReadPosRankSum=1.279;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1865,185,0
chrXIV	672773	.	G	T	1971	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.97;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2004,216,0
chrXIV	673074	.	C	T	3233.06	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=21.27;SB=-1.467e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3267,357,0
chrXIV	673093	.	G	A	3322.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.4489;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=20.89;SB=-1.837e+03	GT:AD:DP:GQ:PL	1/1:0,158:159:99:3322,360,0
chrXIV	673242	.	C	T	1812	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.4676;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=18.68;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1845,201,0
chrXIV	673326	.	C	T	2306	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.75;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2339,249,0
chrXIV	673486	.	C	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=19.29;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1904,207,0
chrXIV	673496	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.82;MQ0=0;QD=19.06;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1901,207,0
chrXIV	673518	.	G	A	1766	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;QD=18.21;SB=-1.214e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1799,195,0
chrXIV	673519	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=16.92;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1742,195,0
chrXIV	673700	.	G	A	1900	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.09;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1933,213,0
chrXIV	673832	.	A	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.80;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1341,153,0
chrXIV	674120	.	A	G	1592	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=22.11;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1625,186,0
chrXIV	674132	.	C	T	1422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=68;Dels=0.00;FS=9.939;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.018;QD=20.91;ReadPosRankSum=2.123;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1455,159,0
chrXIV	674165	.	T	C	977	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.20;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1010,114,0
chrXIV	674309	.	T	C	1827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;DP=91;Dels=0.00;FS=5.611;HaplotypeScore=7.2564;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.767;QD=20.08;ReadPosRankSum=2.923;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:3,88:91:99:1860,207,0
chrXIV	674338	.	G	C	1590	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=19.87;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1623,186,0
chrXIV	674407	.	T	C	2051	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.659;QD=21.59;ReadPosRankSum=1.696;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2084,234,0
chrXIV	674483	.	G	A	2519	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=14.3612;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.65;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2552,276,0
chrXIV	674892	.	T	C	2343	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.823;DP=109;Dels=0.00;FS=2.582;HaplotypeScore=9.6348;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.206;QD=21.50;ReadPosRankSum=2.842;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:3,105:109:99:2376,258,0
chrXIV	674949	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=17.09;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,54:58:99:1024,114,0
chrXIV	674958	.	C	T	840	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.2874;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=15.85;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:96:873,96,0
chrXIV	675270	.	A	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.3378;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.48;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1253,135,0
chrXIV	675462	.	G	A	1112	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=8.0885;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.98;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1145,126,0
chrXIV	675567	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.62;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1390,150,0
chrXIV	675859	.	A	G	1138	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.47;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1171,129,0
chrXIV	676029	.	T	G	793	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.290;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.585;QD=16.52;ReadPosRankSum=1.216;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,46:48:93:826,93,0
chrXIV	676202	.	A	G	1034	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1067,123,0
chrXIV	676230	.	G	A	923	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:99:956,105,0
chrXIV	676368	.	A	G	1094	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.86;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1127,126,0
chrXIV	676470	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.44;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1255,135,0
chrXIV	676834	.	A	G	1455	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.09;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1488,165,0
chrXIV	676917	.	A	C	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=4.284;HaplotypeScore=5.9199;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;MQRankSum=-1.674;QD=21.90;ReadPosRankSum=1.615;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1325,147,0
chrXIV	677649	.	C	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.49;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1222,135,0
chrXIV	677705	.	T	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.67;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1257,144,0
chrXIV	677799	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.61;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1517,177,0
chrXIV	677841	.	A	G	1458	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.25;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1491,168,0
chrXIV	679026	.	T	C	719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.332;QD=14.98;ReadPosRankSum=1.438;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:1,46:48:84:752,84,0
chrXIV	679028	.	A	T	749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;MQRankSum=-1.386;QD=14.98;ReadPosRankSum=1.663;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:84:782,84,0
chrXIV	679089	.	G	A	1252	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=17.15;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1285,141,0
chrXIV	679168	.	G	A	3581.01	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=4.7844;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.96;SB=-2.037e+03	GT:AD:DP:GQ:PL	1/1:0,156:156:99:3581,393,0
chrXIV	679220	.	C	T	2413	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=20.62;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2446,264,0
chrXIV	679227	.	A	G	1905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=5.686;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;MQRankSum=0.208;QD=19.05;ReadPosRankSum=1.697;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1938,222,0
chrXIV	679383	.	G	A	1304	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.73;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1337,153,0
chrXIV	679461	.	T	A	2127	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.26;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2160,234,0
chrXIV	679554	.	T	C	2490	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.08;SB=-1.560e+03	GT:AD:DP:GQ:PL	1/1:0,122:124:99:2523,276,0
chrXIV	680022	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.477;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5059;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;MQRankSum=-0.204;QD=18.48;ReadPosRankSum=1.528;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1308,150,0
chrXIV	680044	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=5.563;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.626;QD=21.24;ReadPosRankSum=1.684;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1562,177,0
chrXIV	680095	.	T	C	1439	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;MQRankSum=-0.736;QD=19.71;ReadPosRankSum=1.637;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1472,168,0
chrXIV	680099	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.84;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1540,162,0
chrXIV	680172	.	C	T	965	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.56;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:998,108,0
chrXIV	680328	.	A	G	1966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=99;Dels=0.00;FS=3.590;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=0.180;QD=19.86;ReadPosRankSum=1.696;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,95:99:99:1999,225,0
chrXIV	680383	.	G	A	2144	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.82;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2177,231,0
chrXIV	680403	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.31;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1608,177,0
chrXIV	680406	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=17.77;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1490,171,0
chrXIV	680467	.	T	C	1217	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.085;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=0.969;QD=20.63;ReadPosRankSum=1.674;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1250,138,0
chrXIV	680684	.	C	T	3011	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.6178;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.71;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3044,327,0
chrXIV	681117	.	G	A	2155	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=16.1120;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.95;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2188,234,0
chrXIV	681312	.	C	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.64;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,73:77:99:1622,180,0
chrXIV	682360	.	G	C	1882	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.95;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1915,219,0
chrXIV	682434	.	A	G	1748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.509;QD=20.09;ReadPosRankSum=1.651;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:1781,201,0
chrXIV	682580	.	A	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.53;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1244,135,0
chrXIV	682695	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.74;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1359,156,0
chrXIV	682893	.	C	T	1917	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.38;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1950,210,0
chrXIV	683193	.	G	A	1196	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.98;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1229,135,0
chrXIV	683256	.	A	C	1815	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.62;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1848,210,0
chrXIV	683297	.	A	G	1794	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=86;Dels=0.00;FS=3.062;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.819;QD=20.86;ReadPosRankSum=2.364;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1827,207,0
chrXIV	683709	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.56;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1192,129,0
chrXIV	684276	.	T	C	2160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.458;QD=21.39;ReadPosRankSum=1.698;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2193,246,0
chrXIV	684413	.	G	A	1797	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.32;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1830,198,0
chrXIV	684891	.	C	T	1949	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.5474;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=17.88;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:1982,222,0
chrXIV	684966	.	A	G	1700	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.2574;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=18.28;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,90:93:99:1733,192,0
chrXIV	685065	.	A	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.82;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1407,153,0
chrXIV	685071	.	A	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=18.60;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1279,141,0
chrXIV	685182	.	C	T	1078	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.60;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1111,120,0
chrXIV	685203	.	C	T	917	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=19.51;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:950,102,0
chrXIV	685397	.	C	A	922	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.95;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:955,105,0
chrXIV	685557	.	A	G	1133	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.60;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1166,132,0
chrXIV	685773	.	C	T	1815	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.31;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1848,207,0
chrXIV	686126	.	T	C	1964	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=13.0901;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.67;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1997,225,0
chrXIV	686348	.	A	C	1596	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.17;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1629,180,0
chrXIV	686681	.	T	C	1316	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6712;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.25;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1349,156,0
chrXIV	686786	.	T	C	1912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=0.051;QD=18.93;ReadPosRankSum=1.698;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:1945,222,0
chrXIV	686798	.	T	C	2087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.7669;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-0.461;QD=19.15;ReadPosRankSum=1.669;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2120,237,0
chrXIV	686866	.	G	A	1979	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.40;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2012,219,0
chrXIV	687249	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.1245;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=15.71;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1604,174,0
chrXIV	687406	.	G	C	1107	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.77;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1140,126,0
chrXIV	687661	.	G	A	1373	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.61;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1406,153,0
chrXIV	687788	.	G	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=20.83;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1762,186,0
chrXIV	687829	.	A	G	1521	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=19.25;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1554,177,0
chrXIV	687853	.	C	T	1618	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.26;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1651,180,0
chrXIV	688148	.	G	T	1414	SnpCluster	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6634;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=15.89;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1447,156,0
chrXIV	688149	.	A	T	1411	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.0860;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;MQRankSum=-0.981;QD=16.41;ReadPosRankSum=1.690;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1444,153,0
chrXIV	688150	.	A	C	1288	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=3.349;DP=85;Dels=0.00;FS=5.351;HaplotypeScore=5.8980;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.202;QD=15.15;ReadPosRankSum=2.201;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:4,79:85:99:1321,150,0
chrXIV	688572	.	C	G	2069	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.3567;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.70;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2102,234,0
chrXIV	688744	.	A	G	2196	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.15;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2229,255,0
chrXIV	689029	.	A	G	1735	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.4300;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.49;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1768,201,0
chrXIV	689057	.	A	G	1705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-0.680;QD=21.31;ReadPosRankSum=1.644;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1738,189,0
chrXIV	689582	.	C	G	1701	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.2189;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.53;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1734,192,0
chrXIV	689791	.	A	G	1619	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.80;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1652,186,0
chrXIV	689944	.	C	G	2066	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.46;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2099,234,0
chrXIV	689964	.	A	C	2398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1725;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.684;QD=20.15;ReadPosRankSum=1.645;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2431,267,0
chrXIV	690162	.	T	G	1186	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.4402;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.56;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1219,138,0
chrXIV	690208	.	T	A	1867	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2608;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.855;QD=23.63;ReadPosRankSum=1.688;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1900,201,0
chrXIV	690236	.	A	C	1802	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.98;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1835,204,0
chrXIV	690310	.	T	C	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.435;QD=22.44;ReadPosRankSum=1.683;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1604,183,0
chrXIV	690677	.	A	G	1213	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.22;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1246,138,0
chrXIV	691109	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.68;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1529,171,0
chrXIV	691601	.	C	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.2148;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.06;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1555,165,0
chrXIV	691644	.	T	C	1256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=57;Dels=0.00;FS=2.615;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.282;QD=22.04;ReadPosRankSum=2.364;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1289,144,0
chrXIV	691738	.	T	C	1470	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.34;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1503,168,0
chrXIV	691784	.	G	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.26;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1755,192,0
chrXIV	692569	.	A	G	2557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.707;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=12.1971;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.311;QD=17.88;ReadPosRankSum=0.124;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,139:143:99:2590,303,0
chrXIV	692612	.	C	T	2516	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=23.51;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2549,276,0
chrXIV	692704	.	A	G	3079	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.68;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3112,354,0
chrXIV	692864	.	A	G	3165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-0.124;QD=18.62;ReadPosRankSum=1.711;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:1,167:170:99:3198,351,0
chrXIV	693379	.	G	T	1352	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.53;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1385,150,0
chrXIV	693607	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.92;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1121,120,0
chrXIV	693964	.	C	T	462	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=13.59;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:57:495,57,0
chrXIV	694158	.	T	A	915	filter	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=63.36;MQ0=0;QD=19.47;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,47:47:99:948,102,0
chrXIV	694273	.	T	C	788	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.720;QD=22.51;ReadPosRankSum=2.306;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,32:35:93:821,93,0
chrXIV	694332	.	G	C	1400	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.58;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1433,153,0
chrXIV	694337	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.77;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1448,159,0
chrXIV	694347	.	G	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=20.70;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1461,165,0
chrXIV	694868	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0880;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=17.56;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1403,153,0
chrXIV	695563	.	G	A	1403	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.33;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1436,156,0
chrXIV	695572	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;QD=17.07;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1330,153,0
chrXIV	695585	.	G	A	1108	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=-0.176;QD=16.06;ReadPosRankSum=0.377;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1141,126,0
chrXIV	695646	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.04;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1025,114,0
chrXIV	695662	.	T	C	1227	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.204;QD=20.80;ReadPosRankSum=1.674;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1260,138,0
chrXIV	695781	.	G	A	1909	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.20;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1942,213,0
chrXIV	695861	.	T	C	1047	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=16.62;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1080,120,0
chrXIV	695864	.	C	T	980	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=15.81;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1013,111,0
chrXIV	695927	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.28;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1124,129,0
chrXIV	695952	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.51;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1311,141,0
chrXIV	696037	.	C	G	1668	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.85;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1701,186,0
chrXIV	696194	.	C	T	2133	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.45;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2166,231,0
chrXIV	696302	.	C	T	1199	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.20;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1232,135,0
chrXIV	696372	.	C	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.12;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1237,135,0
chrXIV	696443	.	T	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.88;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1564,171,0
chrXIV	696927	.	T	C	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.206;QD=14.58;ReadPosRankSum=1.688;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1185,129,0
chrXIV	697132	.	A	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.57;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1226,135,0
chrXIV	697337	.	C	T	2083	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.40;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2116,231,0
chrXIV	697709	.	C	T	1575	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.45;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1608,180,0
chrXIV	698058	.	T	A	1921	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=10.7240;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.11;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1954,216,0
chrXIV	698421	.	C	T	1803	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.60;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1836,198,0
chrXIV	698660	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0858;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.38;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1979,216,0
chrXIV	698753	.	A	G	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=69;Dels=0.00;FS=6.214;HaplotypeScore=11.1998;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.699;QD=19.13;ReadPosRankSum=2.379;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1353,153,0
chrXIV	698844	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=12.3869;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=21.44;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1255,135,0
chrXIV	699152	.	C	T	2471	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.26;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2504,273,0
chrXIV	699646	.	A	C	2004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=98;Dels=0.00;FS=3.802;HaplotypeScore=5.5979;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.335;QD=20.45;ReadPosRankSum=1.696;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,95:98:99:2037,225,0
chrXIV	700166	.	C	T	2130	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.5442;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.68;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2163,243,0
chrXIV	700262	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=3.229;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.369;QD=18.93;ReadPosRankSum=1.675;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1188,132,0
chrXIV	700307	.	C	T	1184	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.41;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1217,135,0
chrXIV	700328	.	C	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.04;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1115,123,0
chrXIV	700405	.	T	A	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=3.701;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=-0.102;QD=20.81;ReadPosRankSum=1.681;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1448,156,0
chrXIV	700510	.	A	G	2022	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.0776;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.63;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2055,231,0
chrXIV	700775	.	C	T	875	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.62;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:908,99,0
chrXIV	701168	.	A	G	1722	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.52;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1755,198,0
chrXIV	701234	.	G	A	1859	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=15.6095;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.57;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1892,207,0
chrXIV	701450	.	T	C	940	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=14.24;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:973,105,0
chrXIV	701486	.	C	G	913	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=14.05;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:946,108,0
chrXIV	701567	.	T	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.97;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1171,132,0
chrXIV	701618	.	G	T	1576	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.4233;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.11;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1609,180,0
chrXIV	701689	.	T	C	2238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=109;Dels=0.00;FS=3.918;HaplotypeScore=8.0478;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=-0.131;QD=20.53;ReadPosRankSum=0.915;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:1,106:109:99:2271,258,0
chrXIV	701848	.	A	T	1522	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=4.594;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.096;QD=21.14;ReadPosRankSum=1.588;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1555,171,0
chrXIV	702035	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.4884;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.71;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1769,201,0
chrXIV	702206	.	C	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.38;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1777,189,0
chrXIV	702456	.	G	A	1679	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.23;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1712,189,0
chrXIV	702719	.	T	C	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=-0.876;QD=21.31;ReadPosRankSum=1.691;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1866,216,0
chrXIV	702909	.	A	G	1269	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=18.13;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1302,147,0
chrXIV	702947	.	A	T	1181	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.880;QD=19.36;ReadPosRankSum=1.675;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1214,132,0
chrXIV	702991	.	A	G	1263	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.14;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1296,147,0
chrXIV	703043	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.8888;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.17;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2150,234,0
chrXIV	703080	.	G	A	2219	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.34;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2252,240,0
chrXIV	703250	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.24;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1545,168,0
chrXIV	703315	.	A	G	752	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=14.75;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:90:785,90,0
chrXIV	703322	.	C	T	616	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.78;MQ0=0;QD=13.39;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:75:649,75,0
chrXIV	703323	.	C	A	635	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=13.51;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:75:668,75,0
chrXIV	703330	.	C	T	585	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.95;MQ0=0;QD=12.72;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:72:618,72,0
chrXIV	703355	.	C	G	683	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=42.38;MQ0=0;QD=10.84;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:81:716,81,0
chrXIV	703361	.	G	A	836	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=13.06;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:93:869,93,0
chrXIV	703454	.	T	C	1480	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=4.771;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=-0.427;QD=21.14;ReadPosRankSum=1.682;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1513,174,0
chrXIV	703536	.	G	A	2039	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.17;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2072,228,0
chrXIV	703603	.	C	T	1995	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.5558;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=20.36;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,96:98:99:2028,225,0
chrXIV	703647	.	T	C	2139	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=23.25;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2172,243,0
chrXIV	703674	.	A	G	1793	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.11;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:1826,207,0
chrXIV	703685	.	C	T	1879	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5892;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;QD=18.42;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1912,210,0
chrXIV	703883	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.50;MQ0=0;QD=17.75;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1258,135,0
chrXIV	703938	.	T	C	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.667;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;MQRankSum=0.465;QD=15.96;ReadPosRankSum=1.690;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1342,150,0
chrXIV	703949	.	G	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=16.29;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1532,171,0
chrXIV	704114	.	C	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=19.74;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1810,201,0
chrXIV	704292	.	A	C	447.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.937;DP=70;Dels=0.00;FS=10.789;HaplotypeScore=5.8308;MLEAC=1;MLEAF=0.500;MQ=38.26;MQ0=0;MQRankSum=-1.393;QD=6.39;ReadPosRankSum=3.589;SB=-3.650e+02	GT:AD:DP:GQ:PL	0/1:32,38:70:99:477,0,220
chrXIV	704295	.	T	A	347.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.604;DP=72;Dels=0.00;FS=6.516;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.63;MQ0=0;MQRankSum=-1.100;QD=4.82;ReadPosRankSum=2.216;SB=-3.250e+02	GT:AD:DP:GQ:PL	0/1:38,34:72:99:377,0,299
chrXIV	704296	.	C	T	285.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;DP=70;Dels=0.00;FS=8.318;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.79;MQ0=0;MQRankSum=-0.118;QD=4.07;ReadPosRankSum=2.400;SB=-2.590e+02	GT:AD:DP:GQ:PL	0/1:39,31:70:99:315,0,357
chrXIV	704301	.	C	T	133.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.415;DP=66;Dels=0.00;FS=6.925;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.07;MQ0=0;MQRankSum=-1.930;QD=2.02;ReadPosRankSum=-1.216;SB=-2.320e+02	GT:AD:DP:GQ:PL	0/1:41,25:66:99:163,0,403
chrXIV	704304	.	T	A	130.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;DP=61;Dels=0.00;FS=15.974;HaplotypeScore=1.8600;MLEAC=1;MLEAF=0.500;MQ=35.96;MQ0=0;MQRankSum=-1.363;QD=2.13;ReadPosRankSum=-2.609;SB=-9.801e+01	GT:AD:DP:GQ:PL	0/1:42,19:61:99:160,0,425
chrXIV	704325	.	G	A	374.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.299;DP=59;Dels=0.00;FS=3.361;HaplotypeScore=12.8261;MLEAC=1;MLEAF=0.500;MQ=35.52;MQ0=0;MQRankSum=-3.348;QD=6.34;ReadPosRankSum=-1.911;SB=-4.690e+02	GT:AD:DP:GQ:PL	0/1:10,46:59:85:404,0,85
chrXIV	704334	.	C	A	572	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=30.7225;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=-0.346;QD=9.53;ReadPosRankSum=1.444;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:45:605,45,0
chrXIV	704337	.	A	C,T	468.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.866;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9807;MLEAC=1,1;MLEAF=0.500,0.500;MQ=34.77;MQ0=0;MQRankSum=0.866;QD=7.80;ReadPosRankSum=1.675;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/2:1,24,35:60:99:528,291,286,215,0,201
chrXIV	704338	.	T	C	561	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.020;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=35.5221;MLEAC=2;MLEAF=1.00;MQ=34.68;MQ0=0;MQRankSum=-0.061;QD=9.20;ReadPosRankSum=2.369;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:42:594,42,0
chrXIV	704343	.	T	C	168.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.569;DP=71;Dels=0.00;FS=2.107;HaplotypeScore=44.3352;MLEAC=1;MLEAF=0.500;MQ=33.94;MQ0=0;MQRankSum=1.451;QD=2.37;ReadPosRankSum=-1.643;SB=-2.010e+02	GT:AD:DP:GQ:PL	0/1:46,25:71:99:198,0,312
chrXIV	704346	.	G	T	270.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;DP=78;Dels=0.00;FS=13.109;HaplotypeScore=44.3352;MLEAC=1;MLEAF=0.500;MQ=33.42;MQ0=0;MQRankSum=-1.857;QD=3.46;ReadPosRankSum=-4.184;SB=-4.990e+02	GT:AD:DP:GQ:PL	0/1:24,54:78:99:300,0,189
chrXIV	704352	.	T	C	147.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;DP=86;Dels=0.00;FS=15.410;HaplotypeScore=44.2805;MLEAC=1;MLEAF=0.500;MQ=33.03;MQ0=0;MQRankSum=-1.767;QD=1.71;ReadPosRankSum=2.672;SB=-4.701e+01	GT:AD:DP:GQ:PL	0/1:62,24:86:99:177,0,393
chrXIV	704355	.	C	A	147.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;DP=87;Dels=0.00;FS=15.265;HaplotypeScore=23.2286;MLEAC=1;MLEAF=0.500;MQ=33.47;MQ0=0;MQRankSum=-2.464;QD=1.69;ReadPosRankSum=1.980;SB=-4.401e+01	GT:AD:DP:GQ:PL	0/1:63,24:87:99:177,0,386
chrXIV	704358	.	A	T	160.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DP=88;Dels=0.00;FS=15.313;HaplotypeScore=55.8020;MLEAC=1;MLEAF=0.500;MQ=33.42;MQ0=0;MQRankSum=-3.134;QD=1.82;ReadPosRankSum=1.438;SB=-5.501e+01	GT:AD:DP:GQ:PL	0/1:64,24:88:99:190,0,416
chrXIV	704367	.	G	A,T	323.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=5.054;DP=85;Dels=0.00;FS=18.368;HaplotypeScore=1.7480;MLEAC=1,1;MLEAF=0.500,0.500;MQ=33.57;MQ0=0;MQRankSum=-2.295;QD=3.80;ReadPosRankSum=-3.954;SB=-2.070e+02	GT:AD:DP:GQ:PL	1/2:33,28,24:85:99:383,99,219,149,0,274
chrXIV	704376	.	A	C	126.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;DP=82;Dels=0.00;FS=10.869;HaplotypeScore=63.1887;MLEAC=1;MLEAF=0.500;MQ=33.72;MQ0=0;MQRankSum=-3.501;QD=1.54;ReadPosRankSum=-5.594;SB=-5.701e+01	GT:AD:DP:GQ:PL	0/1:60,22:82:99:156,0,435
chrXIV	704379	.	T	C	174.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;DP=67;Dels=0.00;FS=2.030;HaplotypeScore=25.3935;MLEAC=1;MLEAF=0.500;MQ=33.48;MQ0=0;MQRankSum=-1.943;QD=2.60;ReadPosRankSum=0.346;SB=-2.890e+02	GT:AD:DP:GQ:PL	0/1:36,31:67:99:204,0,236
chrXIV	704388	.	G	A	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.405;DP=70;Dels=0.00;FS=12.470;HaplotypeScore=42.1793;MLEAC=1;MLEAF=0.500;MQ=29.54;MQ0=0;MQRankSum=-1.148;QD=0.16;ReadPosRankSum=-6.150;SB=-4.901e+01	GT:AD:DP:GQ:PL	0/1:49,19:70:41:41,0,239
chrXIV	704394	.	C	T	99.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;DP=81;Dels=0.00;FS=11.315;HaplotypeScore=40.5510;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=0;MQRankSum=-1.572;QD=1.22;ReadPosRankSum=-5.474;SB=-1.720e+02	GT:AD:DP:GQ:PL	0/1:48,33:81:99:129,0,233
chrXIV	704400	.	T	C	283.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=73.2006;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=1.352;QD=3.93;ReadPosRankSum=-4.381;SB=-5.400e+02	GT:AD:DP:GQ:PL	0/1:20,52:72:99:313,0,104
chrXIV	704401	.	T	C	275.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=72.3339;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=0.266;QD=3.87;ReadPosRankSum=-4.474;SB=-5.340e+02	GT:AD:DP:GQ:PL	0/1:19,52:71:99:305,0,107
chrXIV	704408	.	T	C	393.02	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.578;DP=75;Dels=0.00;FS=5.351;HaplotypeScore=86.9880;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;MQRankSum=0.310;QD=5.24;ReadPosRankSum=4.461;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:21,54:75:26:426,26,0
chrXIV	704409	.	G	T	51.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=53.4414;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=-0.778;QD=0.67;ReadPosRankSum=3.385;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:58,17:76:81:81,0,242
chrXIV	704415	.	C	T	27.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;DP=74;Dels=0.00;FS=8.107;HaplotypeScore=51.6118;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=0;MQRankSum=-0.797;QD=0.37;ReadPosRankSum=-3.516;SB=-1.950e+02	GT:AD:DP:GQ:PL	0/1:46,28:74:57:57,0,309
chrXIV	704430	.	T	G	130.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;DP=115;Dels=0.00;FS=11.422;HaplotypeScore=59.0351;MLEAC=1;MLEAF=0.500;MQ=30.92;MQ0=0;MQRankSum=1.444;QD=1.13;ReadPosRankSum=-4.252;SB=-8.007e+00	GT:AD:DP:GQ:PL	0/1:81,19:115:99:160,0,564
chrXIV	704439	.	A	C	505.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.606;DP=136;Dels=0.00;FS=10.614;HaplotypeScore=19.3510;MLEAC=1;MLEAF=0.500;MQ=32.18;MQ0=0;MQRankSum=-2.904;QD=3.71;ReadPosRankSum=7.328;SB=-5.290e+02	GT:AD:DP:GQ:PL	0/1:64,72:136:99:535,0,475
chrXIV	704442	.	C	T	456.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.332;DP=142;Dels=0.00;FS=8.872;HaplotypeScore=3.9746;MLEAC=1;MLEAF=0.500;MQ=32.05;MQ0=0;MQRankSum=-0.252;QD=3.21;ReadPosRankSum=-6.050;SB=-4.950e+02	GT:AD:DP:GQ:PL	0/1:78,64:142:99:486,0,521
chrXIV	704444	.	A	C,T	1075.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=31.95;MQ0=0;QD=7.47;SB=-1.482e+03	GT:AD:DP:GQ:PL	1/2:0,66,78:144:99:1135,602,534,533,0,455
chrXIV	704448	.	T	C	560.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.551;DP=176;Dels=0.00;FS=7.711;HaplotypeScore=10.2592;MLEAC=1;MLEAF=0.500;MQ=32.56;MQ0=0;MQRankSum=-0.059;QD=3.18;ReadPosRankSum=-4.849;SB=-7.800e+02	GT:AD:DP:GQ:PL	0/1:91,85:176:99:590,0,629
chrXIV	704459	.	C	T	585.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.990;DP=229;Dels=0.00;FS=3.093;HaplotypeScore=27.3655;MLEAC=1;MLEAF=0.500;MQ=33.40;MQ0=0;MQRankSum=-2.034;QD=2.55;ReadPosRankSum=2.788;SB=-6.480e+02	GT:AD:DP:GQ:PL	0/1:137,92:229:99:615,0,1036
chrXIV	704472	.	G	A	1476.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.041;DP=241;Dels=0.00;FS=0.000;HaplotypeScore=29.1489;MLEAC=1;MLEAF=0.500;MQ=33.76;MQ0=0;MQRankSum=-2.930;QD=6.12;ReadPosRankSum=0.309;SB=-1.474e+03	GT:AD:DP:GQ:PL	0/1:73,167:241:99:1506,0,391
chrXIV	704490	.	C	T	439.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.874;DP=223;Dels=0.00;FS=5.262;HaplotypeScore=14.7499;MLEAC=1;MLEAF=0.500;MQ=34.47;MQ0=0;MQRankSum=-2.881;QD=1.97;ReadPosRankSum=-2.605;SB=-3.460e+02	GT:AD:DP:GQ:PL	0/1:156,67:223:99:469,0,1256
chrXIV	704495	.	C	A	407.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.253;DP=223;Dels=0.00;FS=1.897;HaplotypeScore=23.4666;MLEAC=1;MLEAF=0.500;MQ=34.65;MQ0=0;MQRankSum=-1.522;QD=1.83;ReadPosRankSum=-3.362;SB=-2.700e+02	GT:AD:DP:GQ:PL	0/1:161,62:223:99:437,0,1263
chrXIV	704514	.	A	G	410.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099;DP=184;Dels=0.00;FS=4.883;HaplotypeScore=17.5665;MLEAC=1;MLEAF=0.500;MQ=35.78;MQ0=0;MQRankSum=-1.271;QD=2.23;ReadPosRankSum=-1.969;SB=-2.770e+02	GT:AD:DP:GQ:PL	0/1:124,60:184:99:440,0,1077
chrXIV	704526	.	T	C	139.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DP=139;Dels=0.00;FS=1.679;HaplotypeScore=30.9848;MLEAC=1;MLEAF=0.500;MQ=35.43;MQ0=0;MQRankSum=-2.901;QD=1.00;ReadPosRankSum=4.120;SB=-2.550e+02	GT:AD:DP:GQ:PL	0/1:97,42:139:99:169,0,861
chrXIV	704532	.	T	C	313.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=34.7565;MLEAC=1;MLEAF=0.500;MQ=35.20;MQ0=0;MQRankSum=0.860;QD=2.68;ReadPosRankSum=-1.315;SB=-2.750e+02	GT:AD:DP:GQ:PL	0/1:68,48:117:99:343,0,572
chrXIV	704535	.	T	G	386.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;DP=101;Dels=0.00;FS=0.816;HaplotypeScore=25.2593;MLEAC=1;MLEAF=0.500;MQ=35.70;MQ0=0;MQRankSum=-2.030;QD=3.82;ReadPosRankSum=4.634;SB=-3.360e+02	GT:AD:DP:GQ:PL	0/1:53,48:101:99:416,0,398
chrXIV	704537	.	A	C	898	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.364;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=15.8275;MLEAC=2;MLEAF=1.00;MQ=36.36;MQ0=0;MQRankSum=0.267;QD=9.87;ReadPosRankSum=0.057;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:7,84:91:65:931,65,0
chrXIV	704541	.	T	C	346.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;DP=80;Dels=0.00;FS=2.077;HaplotypeScore=17.3776;MLEAC=1;MLEAF=0.500;MQ=35.52;MQ0=0;MQRankSum=-1.045;QD=4.33;ReadPosRankSum=1.658;SB=-2.600e+02	GT:AD:DP:GQ:PL	0/1:37,43:80:99:376,0,298
chrXIV	704544	.	T	A,C	464.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.9397;MLEAC=1,1;MLEAF=0.500,0.500;MQ=30.19;MQ0=0;QD=8.44;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/2:0,31,24:55:99:524,246,213,278,0,245
chrXIV	704547	.	T	A	73.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;DP=36;Dels=0.00;FS=6.397;HaplotypeScore=12.8791;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=-1.339;QD=2.03;ReadPosRankSum=1.046;SB=-2.601e+01	GT:AD:DP:GQ:PL	0/1:19,13:36:99:103,0,109
chrXIV	704548	.	G	C,T	254.11	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=28.12;MQ0=0;QD=7.70;SB=-2.156e+02	GT:AD:DP:GQ:PL	1/2:0,4,29:33:43:314,241,232,73,0,43
chrXIV	704553	.	C	T	209.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=8.04;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:27:242,27,0
chrXIV	704556	.	C	G	91.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=4.15;SB=-7.427e+01	GT:AD:DP:GQ:PL	1/1:0,17:22:15:124,15,0
chrXIV	704559	.	T	A	98.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=4.47;SB=-1.553e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:15:131,15,0
chrXIV	704562	.	C	T	96.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=3.01;SB=-1.983e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:15:129,15,0
chrXIV	704565	.	T	A	171.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;QD=5.34;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:24:204,24,0
chrXIV	704569	.	T	C	186.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.85;MQ0=0;QD=5.64;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:24:219,24,0
chrXIV	704572	.	T	A	209.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;DP=37;Dels=0.00;FS=4.543;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;MQRankSum=-1.733;QD=5.65;ReadPosRankSum=1.264;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:27:242,27,0
chrXIV	704573	.	A	G	207.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.047;DP=37;Dels=0.00;FS=4.543;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.97;MQ0=0;MQRankSum=-1.452;QD=5.59;ReadPosRankSum=1.264;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:27:240,27,0
chrXIV	704577	.	A	G	329	SnpCluster	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;QD=6.21;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:42:362,42,0
chrXIV	704583	.	T	C	382	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=38.25;MQ0=0;QD=6.06;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:48:415,48,0
chrXIV	704786	.	T	C	1961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=132;Dels=0.00;FS=5.342;HaplotypeScore=10.7708;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=-0.400;QD=14.86;ReadPosRankSum=1.705;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:1,129:132:99:1994,228,0
chrXIV	704856	.	T	G	2269	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.4858;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;QD=20.44;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2302,264,0
chrXIV	705005	.	C	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.92;MQ0=0;QD=19.11;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1485,165,0
chrXIV	705045	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.607;QD=17.39;ReadPosRankSum=1.687;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,76:79:99:1407,159,0
chrXIV	705111	.	G	A	1963	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=20.03;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1996,219,0
chrXIV	705188	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.47;MQ0=0;QD=19.06;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1062,117,0
chrXIV	705191	.	C	T	927	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.87;MQ0=0;QD=17.49;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:960,108,0
chrXIV	705204	.	G	A	970	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.29;MQ0=0;QD=15.90;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1003,117,0
chrXIV	705208	.	A	T	1079	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=16.60;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1112,123,0
chrXIV	705221	.	G	A	1091	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.87;MQ0=0;QD=14.95;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1124,123,0
chrXIV	705227	.	T	A	1026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=71;Dels=0.00;FS=12.106;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;MQRankSum=-1.581;QD=14.45;ReadPosRankSum=2.381;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1059,114,0
chrXIV	705401	.	T	C	1032	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=17.49;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1065,120,0
chrXIV	705451	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=16.50;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1617,174,0
chrXIV	705452	.	T	C	1526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=98;Dels=0.00;FS=2.754;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;MQRankSum=-0.214;QD=15.57;ReadPosRankSum=2.374;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:2,96:98:99:1559,177,0
chrXIV	705531	.	A	G	1808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.505;DP=109;Dels=0.00;FS=5.242;HaplotypeScore=11.5125;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;MQRankSum=1.020;QD=16.59;ReadPosRankSum=-0.081;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,107:109:99:1841,210,0
chrXIV	705551	.	C	T	1576	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.23;MQ0=0;QD=14.46;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:1609,174,0
chrXIV	705568	.	G	A	955	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.37;MQ0=0;QD=9.18;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:988,114,0
chrXIV	705570	.	C	A	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;MQRankSum=-1.732;QD=11.31;ReadPosRankSum=0.790;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1198,135,0
chrXIV	705599	.	T	C	1337	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.4742;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=11.05;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:1370,156,0
chrXIV	705627	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=3.2851;MLEAC=2;MLEAF=1.00;MQ=43.67;MQ0=0;QD=11.78;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,131:132:99:1588,174,0
chrXIV	705631	.	A	G	1499	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=11.62;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,128:129:99:1532,174,0
chrXIV	705671	.	T	C	2039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-1.397;QD=16.18;ReadPosRankSum=1.676;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,123:126:99:2072,228,0
chrXIV	705870	.	C	T	3682.01	PASS	AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=10.5245;MLEAC=2;MLEAF=1.00;MQ=50.38;MQ0=0;QD=19.80;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,185:186:99:3682,411,0
chrXIV	705984	.	A	G	3504.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.326;DP=170;Dels=0.00;FS=8.828;HaplotypeScore=19.6275;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;MQRankSum=1.187;QD=20.61;ReadPosRankSum=3.377;SB=-1.951e+03	GT:AD:DP:GQ:PL	1/1:4,166:170:99:3504,393,0
chrXIV	706130	.	A	G	2356	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.01;FS=0.000;HaplotypeScore=16.6691;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.23;SB=-1.415e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2389,264,0
chrXIV	706575	.	A	T	1610	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.47;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1643,177,0
chrXIV	706720	.	T	C	2157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=13.9445;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;MQRankSum=0.815;QD=20.35;ReadPosRankSum=1.698;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:1,102:106:99:2190,246,0
chrXIV	707000	.	G	A	1174	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.52;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1207,132,0
chrXIV	707011	.	G	C	994	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=13.81;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1027,114,0
chrXIV	707029	.	T	C	952	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=14.21;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:985,111,0
chrXIV	707187	.	G	A	2181	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.38;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2214,237,0
chrXIV	707332	.	T	C	1344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-0.415;QD=18.67;ReadPosRankSum=1.586;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1377,153,0
chrXIV	707352	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=20.85;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1409,150,0
chrXIV	707593	.	G	A	1692	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.14;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1725,186,0
chrXIV	707734	.	G	A	1856	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.0066;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=20.40;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1889,216,0
chrXIV	707765	.	A	G	1739	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=20.46;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1772,204,0
chrXIV	708561	.	C	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.5340;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.07;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1120,126,0
chrXIV	708705	.	G	A	1706	SnpCluster	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=16.89;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1739,195,0
chrXIV	708708	.	T	C	1779	SnpCluster	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=17.79;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1812,204,0
chrXIV	708709	.	C	T	1817	SnpCluster	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.17;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1850,204,0
chrXIV	708768	.	C	T	1157	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=14.46;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1190,129,0
chrXIV	708870	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.6488;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=19.29;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1364,150,0
chrXIV	709011	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=75;Dels=0.00;FS=3.129;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.592;QD=19.97;ReadPosRankSum=1.685;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,73:75:99:1531,168,0
chrXIV	709119	.	G	T	1573	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.8959;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.42;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1606,174,0
chrXIV	709317	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.00;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1249,138,0
chrXIV	709675	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=20.05;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1617,180,0
chrXIV	709827	.	A	G	926	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=17.47;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:959,111,0
chrXIV	709906	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.68;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1005,111,0
chrXIV	709959	.	T	C	790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=3.522;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.500;QD=17.17;ReadPosRankSum=1.655;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:93:823,93,0
chrXIV	710457	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.66;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1713,183,0
chrXIV	712259	.	T	C	1906	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.4445;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=-1.258;QD=19.45;ReadPosRankSum=1.696;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,94:98:99:1939,219,0
chrXIV	713348	.	A	T	1828	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=8.6244;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.558;QD=16.62;ReadPosRankSum=2.404;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:2,108:110:99:1861,210,0
chrXIV	715622	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.85;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1388,153,0
chrXIV	715791	.	C	T	1695	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8046;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.67;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1728,186,0
chrXIV	716055	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.31;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1089,120,0
chrXIV	716316	.	C	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.20;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1178,129,0
chrXIV	716325	.	G	A	1119	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.35;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1152,126,0
chrXIV	716522	.	T	C	337	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.05;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:39:370,39,0
chrXIV	716564	.	G	A	527	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.47;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:60:560,60,0
chrXIV	716912	.	T	C	545	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.96;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:63:578,63,0
chrXIV	716972	.	A	G	580	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.71;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:69:613,69,0
chrXIV	716990	.	C	T	684	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=19.00;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:717,78,0
chrXIV	717023	.	A	G	810	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.29;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:96:843,96,0
chrXIV	717065	.	G	A	1211	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.92;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1244,138,0
chrXIV	717134	.	A	G	1319	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.98;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1352,156,0
chrXIV	717218	.	C	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1159,126,0
chrXIV	717379	.	T	C	1090	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-1.570;QD=17.03;ReadPosRankSum=1.570;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1123,123,0
chrXIV	717380	.	T	C	1084	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=16.68;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1117,123,0
chrXIV	717528	.	T	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.73;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1572,168,0
chrXIV	717689	.	T	C	981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.556;DP=60;Dels=0.00;FS=4.486;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.558;QD=16.35;ReadPosRankSum=1.674;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1014,114,0
chrXIV	717731	.	C	A	1031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=60;Dels=0.00;FS=4.624;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.239;QD=17.18;ReadPosRankSum=-0.418;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1064,117,0
chrXIV	717904	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.332;QD=20.62;ReadPosRankSum=1.688;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1641,180,0
chrXIV	718052	.	C	T	1115	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.91;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1148,123,0
chrXIV	718496	.	A	G	2266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.257;DP=103;Dels=0.00;FS=2.638;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=-1.002;QD=22.00;ReadPosRankSum=2.377;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:2,100:103:99:2299,255,0
chrXIV	718667	.	C	T	2269	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=23.15;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2302,252,0
chrXIV	718741	.	G	A	2077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.500;DP=92;Dels=0.00;FS=5.740;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.116;QD=22.58;ReadPosRankSum=-1.001;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2110,216,0
chrXIV	718811	.	G	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.64;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1829,207,0
chrXIV	719201	.	A	C	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.562;QD=20.66;ReadPosRankSum=1.164;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1293,144,0
chrXIV	719272	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.040;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.36;MQ0=0;MQRankSum=-0.702;QD=14.71;ReadPosRankSum=2.393;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1298,150,0
chrXIV	719281	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=14.15;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1363,153,0
chrXIV	719586	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=17.67;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1376,153,0
chrXIV	719595	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0939;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=19.41;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1605,171,0
chrXIV	719787	.	C	T	1899	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=16.66;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:1932,210,0
chrXIV	719790	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.69;MQ0=0;QD=16.80;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1881,204,0
chrXIV	719815	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.28;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1378,156,0
chrXIV	719874	.	G	A	1263	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.73;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1296,147,0
chrXIV	719946	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.14;MQ0=0;QD=19.08;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1197,135,0
chrXIV	719952	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=20.95;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1227,138,0
chrXIV	720135	.	T	C	2296	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=21.46;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2329,261,0
chrXIV	720381	.	T	C	733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.070;DP=88;Dels=0.00;FS=16.943;HaplotypeScore=5.7757;MLEAC=2;MLEAF=1.00;MQ=40.88;MQ0=0;MQRankSum=1.553;QD=8.33;ReadPosRankSum=6.912;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:43,45:88:44:766,44,0
chrXIV	720393	.	T	C	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.346;DP=87;Dels=0.01;FS=24.111;HaplotypeScore=9.4075;MLEAC=1;MLEAF=0.500;MQ=40.81;MQ0=0;MQRankSum=-1.325;QD=0.19;ReadPosRankSum=5.181;SB=-2.650e+02	GT:AD:DP:GQ:PL	0/1:37,48:86:46:46,0,532
chrXIV	720527	.	T	G	1596	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.48;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1629,186,0
chrXIV	720829	.	A	G	1083	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=22.10;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1116,129,0
chrXIV	720905	.	C	T	1315	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.06;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1348,144,0
chrXIV	720947	.	T	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=16.84;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1363,153,0
chrXIV	721369	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.147;DP=58;Dels=0.00;FS=2.615;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=-0.108;QD=19.67;ReadPosRankSum=2.364;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:2,55:58:99:1174,132,0
chrXIV	721603	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=18.70;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1155,132,0
chrXIV	721832	.	T	C	1500	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;QD=15.96;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1533,174,0
chrXIV	721833	.	C	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.75;MQ0=0;MQRankSum=0.128;QD=15.08;ReadPosRankSum=0.237;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,94:97:99:1496,148,0
chrXIV	721854	.	C	G	1353	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=49.99;MQ0=0;QD=15.73;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1386,156,0
chrXIV	721994	.	A	G	942	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=23.55;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:975,108,0
chrXIV	722023	.	G	A	875	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.73;MQ0=0;QD=20.35;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:908,99,0
chrXIV	722025	.	T	C	790	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.75;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:823,93,0
chrXIV	722083	.	G	T	782	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=18.62;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:815,90,0
chrXIV	722238	.	A	T	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.086;DP=36;Dels=0.00;FS=10.086;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;MQRankSum=-2.159;QD=0.41;ReadPosRankSum=-2.379;SB=1.24	GT:AD:DP:GQ:PL	1/1:34,2:36:6:46,6,0
chrXIV	722345	.	A	G	1033	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.12;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1066,117,0
chrXIV	722690	.	A	G	941	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5386;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=17.43;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:974,111,0
chrXIV	722746	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.08;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1464,159,0
chrXIV	723395	.	C	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.51;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1451,159,0
chrXIV	723495	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.7744;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.41;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1135,123,0
chrXIV	723580	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=19.32;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1366,150,0
chrXIV	723593	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.40;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1255,135,0
chrXIV	723962	.	C	T	1189	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.82;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1222,138,0
chrXIV	724160	.	G	A	1556	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.31;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1589,174,0
chrXIV	724182	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=89;Dels=0.00;FS=5.890;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.421;QD=17.20;ReadPosRankSum=2.921;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:3,86:89:99:1564,177,0
chrXIV	724193	.	G	A	1393	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=15.83;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1426,159,0
chrXIV	724322	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=21.62;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1330,147,0
chrXIV	724364	.	A	G	1126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.358;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.133;QD=21.65;ReadPosRankSum=1.666;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1159,132,0
chrXIV	724425	.	A	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.88;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1060,120,0
chrXIV	724486	.	T	C	1197	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=17.87;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1230,141,0
chrXIV	724531	.	T	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.72;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1394,156,0
chrXIV	724609	.	G	A	1321	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.18;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1354,144,0
chrXIV	724673	.	A	T	1648	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.94;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1681,183,0
chrXIV	724686	.	G	A	1683	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=18.91;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1716,189,0
chrXIV	724998	.	T	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.0566;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=22.88;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1749,189,0
chrXIV	725093	.	C	G	1555	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.30;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1588,174,0
chrXIV	725113	.	T	A	962	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.662;DP=59;Dels=0.00;FS=27.181;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.375;QD=16.31;ReadPosRankSum=2.734;SB=-1.010e+02	GT:AD:DP:GQ:PL	1/1:3,56:59:99:995,108,0
chrXIV	725142	.	T	C	1521	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.25;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1554,174,0
chrXIV	725367	.	A	G	818	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=15.43;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:851,99,0
chrXIV	725420	.	T	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=22.49;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1360,144,0
chrXIV	725512	.	T	C	1517	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=71;Dels=0.00;FS=3.051;HaplotypeScore=7.9225;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=0.434;QD=21.37;ReadPosRankSum=2.381;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1550,174,0
chrXIV	725639	.	T	A	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.064;DP=91;Dels=0.00;FS=10.841;HaplotypeScore=86.0066;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;MQRankSum=1.415;QD=15.89;ReadPosRankSum=3.948;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:8,83:91:99:1479,162,0
chrXIV	725765	.	G	C	883	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=19.20;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:916,105,0
chrXIV	725820	.	T	C	1303	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=21.72;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1336,150,0
chrXIV	725867	.	A	G	1572	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=23.12;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1605,177,0
chrXIV	725883	.	A	C	1651	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=22.01;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1684,186,0
chrXIV	725988	.	C	T	3490.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=5.1367;MLEAC=2;MLEAF=1.00;MQ=45.91;MQ0=0;QD=22.96;SB=-1.602e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:3490,375,0
chrXIV	726036	.	C	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;QD=21.02;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1904,213,0
chrXIV	726052	.	G	A	1209	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=20.49;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1242,138,0
chrXIV	726053	.	C	T	1211	SnpCluster	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.38;MQ0=0;QD=20.53;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1244,138,0
chrXIV	726058	.	A	C	1019	SnpCluster	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=19.98;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1052,120,0
chrXIV	726111	.	C	G	335	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=16.75;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:42:368,42,0
chrXIV	726114	.	G	A	409	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=19.48;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:48:442,48,0
chrXIV	726256	.	C	T	846	filter	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=40.08;MQ0=0;QD=14.84;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,55:57:99:879,99,0
chrXIV	726269	.	T	A	394	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.01;MQ0=0;QD=12.31;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,32:32:48:427,48,0
chrXIV	726271	.	T	A	392	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=12.65;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:48:425,48,0
chrXIV	726272	.	T	C	371	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=11.97;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:48:404,48,0
chrXIV	726274	.	A	T	405	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=13.06;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:48:438,48,0
chrXIV	726275	.	G	C	380	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.43;MQ0=0;QD=12.26;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:48:413,48,0
chrXIV	726281	.	A	G	475	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.51;MQ0=1;QD=11.59;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:1,40:41:57:508,57,0
chrXIV	726352	.	C	T	490	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.33;MQ0=9;QD=11.67;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:4,38:42:57:523,57,0
chrXIV	726427	.	C	T	151.06	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.42;MQ0=0;QD=6.87;SB=-7.388e-02	GT:AD:DP:GQ:PL	1/1:0,21:22:21:184,21,0
chrXIV	726489	.	T	C	93.26	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.062;DP=33;Dels=0.00;FS=17.179;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.77;MQ0=6;MQRankSum=4.009;QD=2.83;ReadPosRankSum=-1.726;SB=-7.430e+01	GT:AD:DP:GQ:PL	1/1:25,8:33:15:126,15,0
chrXIV	726588	.	T	C	119.13	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=17.02;SB=-7.359e-02	GT:AD:DP:GQ:PL	1/1:0,7:7:18:152,18,0
chrXIV	726601	.	C	G	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.54;MQ0=0;QD=7.93;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:0,3:3:6:55,6,0
chrXIV	727111	.	G	A	1221	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=18.50;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1254,144,0
chrXIV	727112	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=20.30;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1393,153,0
chrXIV	727273	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;QD=21.29;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1289,144,0
chrXIV	727466	.	G	A	1417	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.5293;MLEAC=2;MLEAF=1.00;MQ=47.60;MQ0=0;QD=19.96;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1450,156,0
chrXIV	727505	.	T	C	1672	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=17.79;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1705,195,0
chrXIV	727584	.	C	T	2767	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.27;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2800,312,0
chrXIV	727684	.	T	C	874	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;MQRankSum=1.519;QD=14.33;ReadPosRankSum=2.369;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:907,102,0
chrXIV	727708	.	G	A	597	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.16;MQ0=0;QD=10.85;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:69:630,69,0
chrXIV	727716	.	G	A	523	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.85;MQ0=0;QD=9.69;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:60:556,60,0
chrXIV	727725	.	T	C	516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;MQRankSum=-1.476;QD=9.56;ReadPosRankSum=1.604;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:60:549,60,0
chrXIV	727727	.	A	G	521	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.62;MQ0=0;QD=9.65;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:63:554,63,0
chrXIV	727758	.	G	A	929	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=15.23;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:962,108,0
chrXIV	727765	.	T	C	1082	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.43;MQ0=0;QD=15.68;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1115,129,0
chrXIV	727778	.	A	G	1680	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=18.67;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1713,195,0
chrXIV	727862	.	C	T	2862	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=7.6218;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.08;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:2895,324,0
chrXIV	727951	.	C	T	2550	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.61;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2583,282,0
chrXIV	728049	.	C	A	1512	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;MQRankSum=1.294;QD=18.90;ReadPosRankSum=0.987;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1545,171,0
chrXIV	728246	.	G	A	3085	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.6826;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=23.73;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3118,339,0
chrXIV	728276	.	T	A	2361	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.27;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2394,255,0
chrXIV	730338	.	T	G	1886	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.43;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1919,222,0
chrXIV	730482	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.53;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1330,150,0
chrXIV	730789	.	A	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1330,147,0
chrXIV	731231	.	A	G	1916	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.08;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1949,216,0
chrXIV	731409	.	G	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=20.05;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1858,201,0
chrXIV	731410	.	G	A	1843	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=19.40;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1876,204,0
chrXIV	731927	.	A	G	1712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.160;DP=85;Dels=0.00;FS=3.062;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=2.015;QD=20.14;ReadPosRankSum=2.276;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1745,198,0
chrXIV	732035	.	C	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.10;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1088,117,0
chrXIV	732176	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.3503;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.254;QD=18.37;ReadPosRankSum=1.686;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1429,162,0
chrXIV	734236	.	T	C	1651	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6459;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.166;QD=22.31;ReadPosRankSum=1.542;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1684,186,0
chrXIV	737420	.	A	T	1314	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.32;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1347,147,0
chrXIV	737558	.	A	G	1115	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=19.91;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1148,129,0
chrXIV	737573	.	C	A	984	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.29;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1017,111,0
chrXIV	737585	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=17.54;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1138,126,0
chrXIV	737636	.	C	T	1028	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=16.85;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1061,120,0
chrXIV	737846	.	C	T	1116	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=17.71;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1149,132,0
chrXIV	737861	.	T	C	908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;DP=60;Dels=0.00;FS=5.722;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;MQRankSum=-1.458;QD=15.13;ReadPosRankSum=2.815;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:3,57:60:99:941,108,0
chrXIV	737862	.	G	C	970	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.83;MQ0=0;QD=16.44;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1003,114,0
chrXIV	737906	.	C	T	1154	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=17.48;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1187,132,0
chrXIV	737930	.	T	C	961	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=18.48;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:994,114,0
chrXIV	738020	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=23.59;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1189,132,0
chrXIV	738023	.	A	C	1076	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.93;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1109,126,0
chrXIV	738132	.	A	G	982	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.148;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;MQRankSum=-1.516;QD=15.34;ReadPosRankSum=1.678;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1015,114,0
chrXIV	738251	.	A	T	957	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=43.40;MQ0=0;QD=17.40;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:990,108,0
chrXIV	738533	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=19.03;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1365,153,0
chrXIV	738536	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;QD=19.68;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1430,156,0
chrXIV	738554	.	T	G	1269	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=18.66;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1302,147,0
chrXIV	738603	.	T	C	788	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;MQRankSum=-1.365;QD=11.94;ReadPosRankSum=1.365;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:90:821,90,0
chrXIV	738607	.	A	C	803	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.75;MQ0=0;MQRankSum=-1.260;QD=12.17;ReadPosRankSum=1.680;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:93:836,93,0
chrXIV	738645	.	C	G	967	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=12.24;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1000,111,0
chrXIV	738646	.	G	C	965	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=12.06;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:998,114,0
chrXIV	738651	.	C	A	1017	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=11.96;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1050,117,0
chrXIV	738697	.	C	A	1014	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.14;MQ0=0;QD=12.52;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1047,117,0
chrXIV	738699	.	T	C	1010	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.85;MQ0=0;MQRankSum=-1.126;QD=12.62;ReadPosRankSum=1.689;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1043,114,0
chrXIV	738707	.	C	A	1076	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=14.35;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1109,120,0
chrXIV	738758	.	T	A	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;MQRankSum=-1.381;QD=19.06;ReadPosRankSum=1.632;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1348,144,0
chrXIV	738775	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=19.48;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1221,129,0
chrXIV	738787	.	T	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.20;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1185,135,0
chrXIV	738859	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=17.80;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1297,141,0
chrXIV	738960	.	A	G	1908	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=20.74;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,88:92:99:1941,216,0
chrXIV	739015	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=24.53;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2265,249,0
chrXIV	739084	.	A	G	1407	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=1.173;QD=22.69;ReadPosRankSum=1.676;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1440,165,0
chrXIV	739126	.	T	C	988	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=18.64;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1021,117,0
chrXIV	739253	.	A	G	1109	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.54;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1142,132,0
chrXIV	739640	.	C	T	1003	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.29;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1036,111,0
chrXIV	739807	.	G	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.24;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1350,153,0
chrXIV	739896	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.92;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1487,159,0
chrXIV	740385	.	A	T	1893	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.14;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1926,213,0
chrXIV	740791	.	C	T	1197	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.62;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1230,132,0
chrXIV	740985	.	C	T	1740	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=22.31;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1773,192,0
chrXIV	741004	.	A	G	1815	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.69;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1848,210,0
chrXIV	741378	.	G	C	1481	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.28;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1514,171,0
chrXIV	741432	.	A	G	1589	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=74;Dels=0.00;FS=2.814;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=2.050;QD=21.47;ReadPosRankSum=2.383;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1622,180,0
chrXIV	741527	.	C	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8544;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=18.91;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1432,156,0
chrXIV	741663	.	A	G	1328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=2.908;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.432;QD=22.13;ReadPosRankSum=2.286;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1361,150,0
chrXIV	741927	.	C	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.03;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1641,174,0
chrXIV	742015	.	A	G	1483	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.2382;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.19;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1516,174,0
chrXIV	742073	.	G	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.8461;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.91;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1448,168,0
chrXIV	742180	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8848;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.87;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1826,198,0
chrXIV	742206	.	T	C	1940	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.171;QD=21.32;ReadPosRankSum=1.618;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1973,219,0
chrXIV	742217	.	G	C	1780	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.54;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1813,207,0
chrXIV	742451	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=23.21;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1820,195,0
chrXIV	742485	.	T	C	1974	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1725;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.69;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2007,222,0
chrXIV	742517	.	C	T	1941	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=17.33;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:1974,222,0
chrXIV	742540	.	G	A	2346	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=16.64;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:2379,264,0
chrXIV	742544	.	G	C	2282	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=15.74;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,143:145:99:2315,261,0
chrXIV	742580	.	T	C	3295.01	PASS	AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=17.34;SB=-1.609e+03	GT:AD:DP:GQ:PL	1/1:0,188:190:99:3295,375,0
chrXIV	742656	.	G	A	3411.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=22.59;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3411,366,0
chrXIV	742699	.	C	G	2122	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=22.34;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2155,243,0
chrXIV	742721	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=21.93;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2051,222,0
chrXIV	742802	.	A	T	2639	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=20.78;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2672,303,0
chrXIV	742870	.	C	T	2156	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.1454;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=15.62;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,138:138:99:2189,249,0
chrXIV	742886	.	A	G	2190	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=16.22;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2223,246,0
chrXIV	743034	.	G	A	1910	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;QD=18.54;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1943,219,0
chrXIV	743053	.	G	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.01;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1564,168,0
chrXIV	743137	.	T	C	1995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.794;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.118;QD=19.37;ReadPosRankSum=1.698;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2028,231,0
chrXIV	743177	.	C	T	2193	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.61;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2226,243,0
chrXIV	743268	.	A	G	2214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=98;Dels=0.00;FS=4.999;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;MQRankSum=-0.460;QD=22.59;ReadPosRankSum=1.697;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2247,246,0
chrXIV	743408	.	A	G	2124	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=20.62;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2157,246,0
chrXIV	743430	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=18.59;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1706,198,0
chrXIV	743434	.	T	C	1821	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=20.01;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1854,210,0
chrXIV	743441	.	T	G	1732	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=18.62;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1765,204,0
chrXIV	743679	.	G	C	1809	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.3611;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=19.88;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1842,204,0
chrXIV	743709	.	C	T	1846	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=18.28;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1879,213,0
chrXIV	743736	.	C	A	1829	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.64;MQ0=0;QD=20.78;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1862,207,0
chrXIV	743766	.	A	C	1533	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.18;MQ0=0;QD=18.70;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1566,183,0
chrXIV	743791	.	C	T	1047	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.67;MQ0=0;QD=20.13;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1080,123,0
chrXIV	743793	.	G	A	1043	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=20.45;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1076,123,0
chrXIV	743834	.	T	C	423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.473;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=36.25;MQ0=0;MQRankSum=1.559;QD=10.07;ReadPosRankSum=1.646;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,39:42:51:456,51,0
chrXIV	743855	.	C	T	752	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.17;MQ0=0;QD=13.43;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:785,84,0
chrXIV	743856	.	A	G	774	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=13.58;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:87:807,87,0
chrXIV	743863	.	A	G	820	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=33.36;MQ0=0;QD=12.62;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:93:853,93,0
chrXIV	743877	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=15.49;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1257,138,0
chrXIV	743903	.	G	A	1295	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=15.06;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1328,144,0
chrXIV	743905	.	C	A	1285	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=39.90;MQ0=0;QD=14.94;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1318,141,0
chrXIV	743970	.	C	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=18.15;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1322,147,0
chrXIV	744001	.	A	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=19.28;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1325,150,0
chrXIV	744011	.	T	C	1056	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.03;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=17.90;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1089,120,0
chrXIV	744028	.	G	C	599	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=13.31;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:72:632,72,0
chrXIV	744031	.	T	G	571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=44;Dels=0.00;FS=4.674;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;MQRankSum=-1.654;QD=12.98;ReadPosRankSum=1.654;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:69:604,69,0
chrXIV	744101	.	G	A	623	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=14.83;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:656,75,0
chrXIV	744105	.	G	A	679	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=14.15;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:712,84,0
chrXIV	744115	.	G	A	1033	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=18.78;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1066,120,0
chrXIV	744147	.	A	G	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=46.70;MQ0=0;MQRankSum=1.140;QD=19.84;ReadPosRankSum=1.687;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1561,177,0
chrXIV	744183	.	G	A	2276	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;QD=23.46;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2309,252,0
chrXIV	744202	.	T	A	1997	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=22.19;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2030,222,0
chrXIV	744238	.	A	G	1819	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=85;Dels=0.00;FS=6.606;HaplotypeScore=7.8554;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.884;QD=21.40;ReadPosRankSum=2.392;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1852,207,0
chrXIV	744305	.	C	T	947	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.21;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:980,108,0
chrXIV	744345	.	T	C	904	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=21.52;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:937,108,0
chrXIV	744347	.	T	C	886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.324;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.08;MQ0=0;MQRankSum=0.685;QD=20.60;ReadPosRankSum=1.652;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:919,105,0
chrXIV	744471	.	T	C	719	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=19.43;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:752,84,0
chrXIV	744823	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6987;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.52;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1326,144,0
chrXIV	744887	.	T	C	847	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.25;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:880,96,0
chrXIV	745002	.	C	T	946	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.55;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:979,108,0
chrXIV	745263	.	C	T	1292	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.84;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1325,150,0
chrXIV	745289	.	C	T	1465	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.93;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1498,162,0
chrXIV	745341	.	C	T	553	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=13.49;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:63:586,63,0
chrXIV	745342	.	A	G	505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=3.869;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;MQRankSum=-0.666;QD=12.95;ReadPosRankSum=1.555;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:60:538,60,0
chrXIV	745494	.	A	G	834	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.85;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:867,99,0
chrXIV	745524	.	A	G	1218	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:55:99:1251,141,0
chrXIV	745595	.	T	C	1563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=78;Dels=0.00;FS=8.577;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.745;QD=20.04;ReadPosRankSum=2.354;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1596,183,0
chrXIV	745867	.	A	G	1884	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=23.55;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1917,210,0
chrXIV	745944	.	A	C	1318	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=21.26;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1351,153,0
chrXIV	746230	.	T	C	1223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=4.162;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;MQRankSum=-0.925;QD=16.75;ReadPosRankSum=1.637;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1256,144,0
chrXIV	746238	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=16.49;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1154,129,0
chrXIV	746254	.	T	G	1007	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=15.73;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1040,120,0
chrXIV	746277	.	G	A	651	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=40.5933;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=12.28;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:75:684,75,0
chrXIV	746338	.	G	T	984	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;QD=20.94;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1017,111,0
chrXIV	746361	.	C	T	1069	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.60;MQ0=0;QD=20.96;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1102,120,0
chrXIV	746386	.	G	A	1005	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.42;MQ0=0;QD=17.63;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1038,111,0
chrXIV	746410	.	T	C	13.94	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.219;DP=34;Dels=0.00;FS=3.135;HaplotypeScore=59.5719;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;MQRankSum=-0.039;QD=0.41;ReadPosRankSum=-2.374;SB=-1.764e+00	GT:AD:DP:GQ:PL	1/1:30,2:34:6:45,6,0
chrXIV	746416	.	G	C	282	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=28.7416;MLEAC=2;MLEAF=1.00;MQ=30.58;MQ0=0;QD=6.00;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:36:315,36,0
chrXIV	746422	.	A	G	333	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=32.94;MQ0=0;QD=6.40;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:42:366,42,0
chrXIV	746431	.	A	G	398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;MQRankSum=-0.257;QD=7.37;ReadPosRankSum=1.668;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:51:431,51,0
chrXIV	746539	.	G	A	986	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.09;MQ0=0;QD=17.61;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1019,120,0
chrXIV	746557	.	A	C	768	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.19;MQ0=0;QD=15.67;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:93:801,93,0
chrXIV	746569	.	C	G	806	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.36;MQ0=0;QD=18.32;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:839,96,0
chrXIV	746594	.	C	T	614	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;QD=16.16;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:75:647,75,0
chrXIV	746613	.	C	T	673	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=16.02;SB=-2.910e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:706,78,0
chrXIV	746653	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=21.45;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1127,123,0
chrXIV	746722	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=1.681;QD=18.91;ReadPosRankSum=1.629;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1319,147,0
chrXIV	746741	.	G	A	1257	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=15.33;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1290,138,0
chrXIV	746746	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.39;MQ0=0;QD=16.10;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1353,150,0
chrXIV	746808	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9214;MLEAC=2;MLEAF=1.00;MQ=48.58;MQ0=0;QD=14.94;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1273,144,0
chrXIV	746852	.	A	T	1652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=5.521;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=0.803;QD=20.15;ReadPosRankSum=1.648;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1685,183,0
chrXIV	746866	.	T	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.93;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1700,186,0
chrXIV	746926	.	C	T	1413	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=22.08;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1446,159,0
chrXIV	746951	.	A	G	1064	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.03;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1097,120,0
chrXIV	746952	.	T	C	1028	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.42;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1061,117,0
chrXIV	747081	.	A	G	2023	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-1.585;QD=20.43;ReadPosRankSum=1.622;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:1,93:99:99:2056,231,0
chrXIV	747209	.	T	A	2014	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=20.14;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2047,222,0
chrXIV	747212	.	T	C	1978	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=3.226;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;MQRankSum=-1.160;QD=19.20;ReadPosRankSum=1.698;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2011,219,0
chrXIV	747242	.	C	T	1525	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=19.55;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1558,171,0
chrXIV	747434	.	A	C	1243	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.35;MQ0=0;QD=14.80;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1276,141,0
chrXIV	747437	.	T	A	1329	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;MQRankSum=-0.346;QD=15.64;ReadPosRankSum=1.651;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1362,147,0
chrXIV	747443	.	T	C	1149	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=-0.823;QD=14.36;ReadPosRankSum=1.689;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1182,132,0
chrXIV	747445	.	C	T	1179	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.04;MQ0=0;QD=14.38;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1212,135,0
chrXIV	747531	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3438;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.93;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1582,180,0
chrXIV	747684	.	C	T	2060	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.15;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2093,228,0
chrXIV	747711	.	C	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=19.07;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1654,186,0
chrXIV	747725	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=17.65;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1410,153,0
chrXIV	747936	.	A	G	1687	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.49;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1720,198,0
chrXIV	748118	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-0.844;QD=17.68;ReadPosRankSum=1.688;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1412,162,0
chrXIV	748253	.	G	A	1618	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.8344;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.48;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1651,177,0
chrXIV	748773	.	T	C	1633	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.41;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1666,186,0
chrXIV	748858	.	T	C	2271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=110;Dels=0.00;FS=12.847;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.741;QD=20.65;ReadPosRankSum=2.404;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:2,106:110:99:2304,261,0
chrXIV	748885	.	T	G	2585	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.28;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2618,291,0
chrXIV	748937	.	A	G	2438	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;DP=121;Dels=0.00;FS=2.960;HaplotypeScore=15.7189;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.030;QD=20.15;ReadPosRankSum=2.389;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:2,119:121:99:2471,273,0
chrXIV	749042	.	A	G	1139	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.64;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1172,135,0
chrXIV	749048	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=19.53;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1322,150,0
chrXIV	749073	.	T	C	1337	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.57;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1370,156,0
chrXIV	749211	.	A	G	936	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.35;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:969,111,0
chrXIV	749402	.	T	C	1163	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=21.15;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1196,132,0
chrXIV	749410	.	G	A	972	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=19.06;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1005,108,0
chrXIV	749415	.	C	T	890	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.34;MQ0=0;QD=19.78;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:923,99,0
chrXIV	749467	.	G	T	735	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=16.33;SB=-3.800e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:768,81,0
chrXIV	749472	.	T	C	671	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=15.25;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:704,81,0
chrXIV	749513	.	C	G	942	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.8668;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=15.70;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:975,108,0
chrXIV	749541	.	T	C	978	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=17.16;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1011,120,0
chrXIV	749580	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.48;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1098,120,0
chrXIV	749652	.	G	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.32;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1685,186,0
chrXIV	749727	.	A	C	1749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=86;Dels=0.00;FS=3.040;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=-1.218;QD=20.34;ReadPosRankSum=2.364;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1782,195,0
chrXIV	749744	.	A	G	1749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=88;Dels=0.00;FS=3.062;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;MQRankSum=0.102;QD=19.87;ReadPosRankSum=1.691;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:1,84:88:99:1782,198,0
chrXIV	749934	.	A	G	1671	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.28;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1704,192,0
chrXIV	750028	.	C	T	2110	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.2817;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.53;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2143,231,0
chrXIV	750904	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.90;MQ0=0;MQRankSum=-1.732;QD=20.56;ReadPosRankSum=1.668;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1143,126,0
chrXIV	750905	.	A	G	1097	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.15;MQ0=0;QD=20.70;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1130,126,0
chrXIV	752169	.	C	T	1314	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.3250;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.86;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1347,147,0
chrXIV	752390	.	C	A	1268	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.44;MQ0=0;QD=18.93;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1301,147,0
chrXIV	752393	.	C	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.58;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1345,153,0
chrXIV	752474	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4229;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=1;MQRankSum=-1.577;QD=18.24;ReadPosRankSum=1.681;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1273,141,0
chrXIV	752519	.	G	A	84.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DP=73;Dels=0.00;FS=32.758;HaplotypeScore=5.7153;MLEAC=1;MLEAF=0.500;MQ=53.45;MQ0=1;MQRankSum=-5.643;QD=1.15;ReadPosRankSum=-1.539;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:57,16:73:99:114,0,1018
chrXIV	752911	.	C	T	711.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;DP=103;Dels=0.00;FS=13.997;HaplotypeScore=8.0012;MLEAC=1;MLEAF=0.500;MQ=51.51;MQ0=1;MQRankSum=-4.851;QD=6.90;ReadPosRankSum=0.902;SB=-1.870e+02	GT:AD:DP:GQ:PL	0/1:60,43:103:99:741,0,1027
chrXIV	752933	.	A	G	358.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;DP=97;Dels=0.00;FS=23.339;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=52.08;MQ0=0;MQRankSum=-6.061;QD=3.69;ReadPosRankSum=1.744;SB=-7.101e+01	GT:AD:DP:GQ:PL	0/1:67,30:97:99:388,0,978
chrXIV	752936	.	A	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.6454;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=17.91;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1645,186,0
chrXIV	752968	.	C	T	1286	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=15.88;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1319,147,0
chrXIV	754294	.	T	C	3625.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=12.6076;MLEAC=2;MLEAF=1.00;MQ=45.51;MQ0=0;MQRankSum=-0.195;QD=21.32;ReadPosRankSum=1.712;SB=-1.389e+03	GT:AD:DP:GQ:PL	1/1:1,168:170:99:3625,414,0
chrXIV	754394	.	A	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.28;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1310,144,0
chrXIV	754560	.	G	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.32;MQ0=0;QD=19.72;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2400,264,0
chrXIV	754562	.	T	C	2365	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=19.87;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2398,267,0
chrXIV	754579	.	T	A	2107	SnpCluster	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.35;MQ0=0;QD=17.86;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2140,231,0
chrXIV	754581	.	T	A	2158	SnpCluster	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.34;MQ0=0;QD=18.44;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2191,237,0
chrXIV	754585	.	C	T	1845	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;MQRankSum=-0.015;QD=15.50;ReadPosRankSum=-0.830;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,118:119:99:1878,199,0
chrXIV	754592	.	G	T	1952	SnpCluster	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=17.91;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:1985,219,0
chrXIV	754593	.	T	G	1861	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=6.264;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;MQRankSum=-1.732;QD=16.92;ReadPosRankSum=1.701;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,109:110:99:1894,219,0
chrXIV	754614	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.35;MQ0=0;QD=15.21;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1660,183,0
chrXIV	754622	.	G	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=12.77;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1412,153,0
chrXIV	754631	.	A	T	1202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.878;DP=107;Dels=0.00;FS=5.561;HaplotypeScore=2.5326;MLEAC=2;MLEAF=1.00;MQ=32.68;MQ0=0;MQRankSum=-1.179;QD=11.23;ReadPosRankSum=2.878;SB=-1.167e+03	GT:AD:DP:GQ:PL	1/1:3,104:107:99:1235,135,0
chrXIV	754660	.	A	T	859	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5434;MLEAC=2;MLEAF=1.00;MQ=37.65;MQ0=0;MQRankSum=0.259;QD=9.87;ReadPosRankSum=1.692;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:892,99,0
chrXIV	754667	.	C	T	846	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9015;MLEAC=2;MLEAF=1.00;MQ=39.70;MQ0=0;QD=9.72;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:879,99,0
chrXIV	754687	.	C	T	761	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.36;MQ0=0;QD=11.03;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:87:794,87,0
chrXIV	754797	.	A	G	932	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;MQRankSum=1.074;QD=17.26;ReadPosRankSum=0.567;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:5,49:54:99:965,108,0
chrXIV	754807	.	G	C	776	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=16.87;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,43:46:93:809,93,0
chrXIV	754857	.	G	A	704	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=41.34;MQ0=0;QD=15.30;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:81:737,81,0
chrXIV	754862	.	T	C	664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DP=46;Dels=0.00;FS=3.108;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;MQRankSum=-1.320;QD=14.43;ReadPosRankSum=2.128;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:81:697,81,0
chrXIV	754875	.	T	C	634	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=13.78;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:78:667,78,0
chrXIV	754876	.	G	T	643	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.56;MQ0=0;QD=13.98;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:78:676,78,0
chrXIV	754918	.	C	T	772	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=16.08;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:805,90,0
chrXIV	755402	.	T	C	1380	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.62;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1413,162,0
chrXIV	755761	.	G	T	2753	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.4708;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.15;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2786,303,0
chrXIV	762274	.	G	C	1597	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=19.96;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1630,180,0
chrXIV	762450	.	C	T	1560	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1593,177,0
chrXIV	765330	.	T	G	1652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.398;QD=19.90;ReadPosRankSum=1.690;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1685,189,0
chrXIV	765614	.	C	T	1930	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.21;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1963,222,0
chrXIV	766129	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.28;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1537,168,0
chrXIV	766311	.	G	A	982	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.25;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1015,111,0
chrXIV	767150	.	G	C	2423	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=9.1697;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.83;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2456,276,0
chrXIV	772254	.	G	C	1581	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=22.91;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1614,177,0
chrXIV	772716	.	C	T	40.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.855;DP=94;Dels=0.00;FS=7.028;HaplotypeScore=9.5511;MLEAC=1;MLEAF=0.500;MQ=52.52;MQ0=4;MQRankSum=-6.278;QD=0.43;ReadPosRankSum=-3.546;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:73,21:94:70:70,0,1469
chrXIV	773064	.	G	A	454.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.871;DP=123;Dels=0.00;FS=8.298;HaplotypeScore=5.3566;MLEAC=1;MLEAF=0.500;MQ=51.46;MQ0=8;MQRankSum=-7.141;QD=3.69;ReadPosRankSum=1.781;SB=-1.580e+02	GT:AD:DP:GQ:PL	0/1:81,40:123:99:484,0,1450
chrXIV	773217	.	A	G	433.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;DP=97;Dels=0.00;FS=18.540;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=53.49;MQ0=4;MQRankSum=-3.126;QD=4.46;ReadPosRankSum=-1.233;SB=-4.701e+01	GT:AD:DP:GQ:PL	0/1:61,36:97:99:463,0,1063
chrXIV	773226	.	T	C	287.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DP=98;Dels=0.00;FS=13.877;HaplotypeScore=4.7208;MLEAC=1;MLEAF=0.500;MQ=53.58;MQ0=4;MQRankSum=-3.708;QD=2.93;ReadPosRankSum=-1.588;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:65,33:98:99:317,0,1098
chrXIV	773244	.	A	T	173.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DP=95;Dels=0.00;FS=8.223;HaplotypeScore=4.9735;MLEAC=1;MLEAF=0.500;MQ=51.79;MQ0=4;MQRankSum=-4.391;QD=1.82;ReadPosRankSum=-0.970;SB=-7.901e+01	GT:AD:DP:GQ:PL	0/1:68,26:95:99:203,0,1246
chrXIV	773265	.	T	G	40.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DP=95;Dels=0.00;FS=3.809;HaplotypeScore=9.4642;MLEAC=1;MLEAF=0.500;MQ=50.84;MQ0=3;MQRankSum=-5.281;QD=0.42;ReadPosRankSum=1.694;SB=-4.001e+01	GT:AD:DP:GQ:PL	0/1:76,18:95:70:70,0,1119
chrXIV	773424	.	T	G	117.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;DP=88;Dels=0.00;FS=33.336;HaplotypeScore=12.5642;MLEAC=1;MLEAF=0.500;MQ=50.25;MQ0=2;MQRankSum=-6.402;QD=1.33;ReadPosRankSum=0.885;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,21:88:99:147,0,1202
chrXIV	773901	.	A	G	54.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DP=100;Dels=0.00;FS=17.644;HaplotypeScore=9.5246;MLEAC=1;MLEAF=0.500;MQ=49.47;MQ0=0;MQRankSum=-7.822;QD=0.54;ReadPosRankSum=1.180;SB=-1.101e+01	GT:AD:DP:GQ:PL	0/1:67,33:100:84:84,0,1414
chrXIV	773934	.	T	A	73.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DP=103;Dels=0.00;FS=17.985;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=50.41;MQ0=3;MQRankSum=-7.884;QD=0.71;ReadPosRankSum=-1.329;SB=-2.501e+01	GT:AD:DP:GQ:PL	0/1:70,33:103:99:103,0,1509
chrXIV	773949	.	T	C	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;DP=110;Dels=0.00;FS=15.696;HaplotypeScore=5.4661;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=5;MQRankSum=-7.183;QD=0.39;ReadPosRankSum=1.500;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:83,27:110:73:73,0,1778
chrXIV	774280	.	C	T	264.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;DP=122;Dels=0.00;FS=2.870;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=54.10;MQ0=4;MQRankSum=-5.276;QD=2.16;ReadPosRankSum=-0.682;SB=-5.001e+01	GT:AD:DP:GQ:PL	0/1:90,31:122:99:294,0,1754
chrXIV	774367	.	G	T	440.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.490;DP=148;Dels=0.00;FS=76.840;HaplotypeScore=13.4546;MLEAC=1;MLEAF=0.500;MQ=52.50;MQ0=13;MQRankSum=-3.103;QD=2.97;ReadPosRankSum=-0.051;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,59:148:99:470,0,1698
chrXIV	774368	.	C	T	416.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.338;DP=144;Dels=0.00;FS=67.704;HaplotypeScore=10.2999;MLEAC=1;MLEAF=0.500;MQ=52.27;MQ0=13;MQRankSum=-4.170;QD=2.89;ReadPosRankSum=1.354;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,55:144:99:446,0,1732
chrXIV	774399	.	T	G	71.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DP=145;Dels=0.00;FS=21.630;HaplotypeScore=11.1998;MLEAC=1;MLEAF=0.500;MQ=51.08;MQ0=19;MQRankSum=-5.447;QD=0.49;ReadPosRankSum=1.347;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:99,46:145:99:101,0,1943
chrXIV	774401	.	T	A	1764.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.936;DP=150;Dels=0.00;FS=24.486;HaplotypeScore=8.8337;MLEAC=1;MLEAF=0.500;MQ=51.02;MQ0=20;MQRankSum=4.333;QD=11.76;ReadPosRankSum=0.037;SB=-4.060e+02	GT:AD:DP:GQ:PL	0/1:50,100:150:99:1794,0,123
chrXIV	775031	.	G	A	766.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.209;DP=194;Dels=0.00;FS=4.215;HaplotypeScore=9.8016;MLEAC=1;MLEAF=0.500;MQ=36.65;MQ0=26;MQRankSum=-3.731;QD=3.95;ReadPosRankSum=-0.244;SB=-2.950e+02	GT:AD:DP:GQ:PL	0/1:101,92:194:99:796,0,1375
chrXIV	775095	.	T	C	307.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.087;DP=202;Dels=0.00;FS=13.446;HaplotypeScore=11.9425;MLEAC=1;MLEAF=0.500;MQ=37.11;MQ0=27;MQRankSum=-9.548;QD=1.52;ReadPosRankSum=-0.189;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:115,87:202:99:337,0,1783
chrXIV	775176	.	A	T	499.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;DP=150;Dels=0.00;FS=56.138;HaplotypeScore=11.3516;MLEAC=1;MLEAF=0.500;MQ=39.73;MQ0=7;MQRankSum=-4.532;QD=3.33;ReadPosRankSum=-3.130;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:97,53:150:99:529,0,1566
chrXIV	775314	.	C	T	574.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;DP=156;Dels=0.00;FS=7.008;HaplotypeScore=9.7758;MLEAC=1;MLEAF=0.500;MQ=23.73;MQ0=57;MQRankSum=0.330;QD=3.68;ReadPosRankSum=0.132;SB=-1.940e+02	GT:AD:DP:GQ:PL	0/1:74,81:156:99:604,0,384
chrXIV	775332	.	G	A	607.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;DP=137;Dels=0.00;FS=18.045;HaplotypeScore=2.4440;MLEAC=1;MLEAF=0.500;MQ=23.07;MQ0=49;MQRankSum=-0.849;QD=4.43;ReadPosRankSum=-0.735;SB=-3.000e+02	GT:AD:DP:GQ:PL	0/1:60,77:137:99:637,0,311
chrXIV	775521	.	C	T	40.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DP=95;Dels=0.00;FS=2.682;HaplotypeScore=7.9303;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=7;MQRankSum=1.545;QD=0.42;ReadPosRankSum=-0.055;SB=-1.007e+00	GT:AD:DP:GQ:PL	0/1:75,20:95:70:70,0,1167
chrXIV	776259	.	G	A	247.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.340;DP=112;Dels=0.00;FS=28.550;HaplotypeScore=5.7489;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=1;MQRankSum=-7.832;QD=2.21;ReadPosRankSum=1.230;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:76,34:112:99:277,0,1180
chrXIV	776956	.	T	G	1182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.857;DP=69;Dels=0.00;FS=10.285;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;MQRankSum=3.714;QD=17.13;ReadPosRankSum=2.745;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:10,58:69:99:1215,141,0
chrXIV	779333	.	C	A	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.069;DP=103;Dels=0.00;FS=140.070;HaplotypeScore=5.6439;MLEAC=1;MLEAF=0.500;MQ=56.16;MQ0=0;MQRankSum=-0.896;QD=0.45;ReadPosRankSum=-5.496;SB=0.079	GT:AD:DP:GQ:PL	0/1:79,22:103:76:76,0,640
chrXIV	780902	.	T	C	568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.045;DP=28;Dels=0.00;FS=15.775;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=2.275;QD=20.29;ReadPosRankSum=1.383;SB=-6.501e+01	GT:AD:DP:GQ:PL	1/1:2,26:28:66:601,66,0
chrXIV	781349	.	G	C	63.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.296;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=26.7466;MLEAC=1;MLEAF=0.500;MQ=15.69;MQ0=4;MQRankSum=-3.067;QD=1.34;ReadPosRankSum=-1.490;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:6,41:47:93:93,0,93
chrXIV	781354	.	A	G	41.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=21.3597;MLEAC=1;MLEAF=0.500;MQ=15.99;MQ0=3;MQRankSum=-3.247;QD=1.05;ReadPosRankSum=-2.441;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:4,35:39:71:71,0,86
chrXIV	781360	.	G	A	83.51	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=11.0787;MLEAC=2;MLEAF=1.00;MQ=17.92;MQ0=1;QD=3.80;SB=-4.882e-01	GT:AD:DP:GQ:PL	1/1:0,22:22:12:116,12,0
chrXIV	781372	.	G	C	81.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;DP=29;Dels=0.00;FS=2.634;HaplotypeScore=9.6873;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=0;MQRankSum=-1.477;QD=2.79;ReadPosRankSum=-2.396;SB=-8.495e+01	GT:AD:DP:GQ:PL	0/1:4,24:29:84:111,0,84
chrXIV	781374	.	C	T	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;DP=29;Dels=0.00;FS=26.578;HaplotypeScore=9.6289;MLEAC=1;MLEAF=0.500;MQ=26.56;MQ0=0;MQRankSum=0.022;QD=1.66;ReadPosRankSum=-1.637;SB=-6.948e+00	GT:AD:DP:GQ:PL	0/1:15,14:29:78:78,0,104
chrXIV	781391	.	C	A	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;DP=43;Dels=0.00;FS=5.267;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=27.45;MQ0=0;MQRankSum=1.108;QD=0.81;ReadPosRankSum=1.359;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:39,4:43:65:65,0,246
chrXIV	781633	.	G	A	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;DP=101;Dels=0.00;FS=7.724;HaplotypeScore=5.7055;MLEAC=1;MLEAF=0.500;MQ=33.56;MQ0=4;MQRankSum=-2.518;QD=0.23;ReadPosRankSum=0.043;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:71,30:101:53:53,0,615
chrXIV	781636	.	T	C	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;DP=103;Dels=0.00;FS=11.790;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=32.75;MQ0=4;MQRankSum=-2.920;QD=0.22;ReadPosRankSum=0.279;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:71,30:103:53:53,0,620
chrXIV	781691	.	A	G	285.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;DP=134;Dels=0.00;FS=0.722;HaplotypeScore=11.2902;MLEAC=1;MLEAF=0.500;MQ=21.76;MQ0=23;MQRankSum=0.965;QD=2.13;ReadPosRankSum=0.582;SB=-7.201e+01	GT:AD:DP:GQ:PL	0/1:57,76:134:99:315,0,241
chrXIV	781747	.	A	G	69.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;DP=98;Dels=0.00;FS=22.796;HaplotypeScore=1.6208;MLEAC=1;MLEAF=0.500;MQ=18.10;MQ0=24;MQRankSum=0.949;QD=0.70;ReadPosRankSum=0.061;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,24:98:99:99,0,370
chrXIV	781770	.	A	G	306.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.162;DP=81;Dels=0.00;FS=0.927;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.96;MQ0=12;MQRankSum=4.138;QD=3.78;ReadPosRankSum=-1.448;SB=-2.266e+02	GT:AD:DP:GQ:PL	0/1:36,45:81:68:336,0,68
chrXIV	781799	.	A	G	248	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=20.88;MQ0=4;MQRankSum=-1.733;QD=5.28;ReadPosRankSum=1.652;SB=-1.086e-02	GT:AD:DP:GQ:PL	1/1:1,45:47:33:281,33,0
chrXIV	781839	.	A	G	188.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=14.12;MQ0=32;MQRankSum=-1.733;QD=3.19;ReadPosRankSum=1.605;SB=-2.354e-02	GT:AD:DP:GQ:PL	1/1:32,27:59:27:221,27,0
chrXIV	781845	.	C	T	178.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.6713;MLEAC=2;MLEAF=1.00;MQ=12.78;MQ0=37;MQRankSum=1.827;QD=3.12;ReadPosRankSum=-1.827;SB=-4.041e-02	GT:AD:DP:GQ:PL	1/1:37,20:57:24:211,24,0
chrXIV	781941	.	T	C	69.27	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;DP=131;Dels=0.00;FS=24.328;HaplotypeScore=5.8335;MLEAC=1;MLEAF=0.500;MQ=6.72;MQ0=109;MQRankSum=0.758;QD=0.53;ReadPosRankSum=0.626;SB=1.18	GT:AD:DP:GQ:PL	0/1:76,55:131:9:99,0,9
chrXIV	781950	.	T	C	40.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.942;DP=134;Dels=0.00;FS=1.721;HaplotypeScore=17.2107;MLEAC=1;MLEAF=0.500;MQ=7.18;MQ0=108;MQRankSum=-2.068;QD=0.30;ReadPosRankSum=2.126;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:58,75:134:70:70,0,79
chrXIV	781953	.	C	T	17.09	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DP=133;Dels=0.00;FS=20.434;HaplotypeScore=5.8102;MLEAC=1;MLEAF=0.500;MQ=7.20;MQ0=107;MQRankSum=-2.069;QD=0.13;ReadPosRankSum=1.684;SB=-6.498e-03	GT:AD:DP:GQ:PL	0/1:60,19:133:47:47,0,82
chrXIV	782094	.	T	G	73.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;DP=120;Dels=0.00;FS=40.350;HaplotypeScore=2.1557;MLEAC=1;MLEAF=0.500;MQ=12.88;MQ0=39;MQRankSum=-1.427;QD=0.61;ReadPosRankSum=-0.927;SB=-7.007e+00	GT:AD:DP:GQ:PL	0/1:69,50:120:99:103,0,178
chrXIV	782151	.	C	T	25.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;DP=69;Dels=0.00;FS=4.042;HaplotypeScore=3.3673;MLEAC=1;MLEAF=0.500;MQ=11.02;MQ0=35;MQRankSum=2.002;QD=0.36;ReadPosRankSum=-0.256;SB=-2.401e+01	GT:AD:DP:GQ:PL	0/1:58,11:69:55:55,0,58
chrXIV	782284	.	G	T	13.24	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=4.39;MQ0=142;MQRankSum=-0.550;QD=0.09;ReadPosRankSum=-0.550;SB=-3.360e-02	GT:AD:DP:GQ:PL	0/1:81,68:149:19:43,0,19
chrXIV	782368	.	A	T	647.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;DP=147;Dels=0.00;FS=49.560;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=17.96;MQ0=36;MQRankSum=2.177;QD=4.40;ReadPosRankSum=1.731;SB=-2.870e+02	GT:AD:DP:GQ:PL	0/1:90,57:147:99:677,0,602
chrXIV	782375	.	T	A	606.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;DP=133;Dels=0.01;FS=50.994;HaplotypeScore=4.8101;MLEAC=1;MLEAF=0.500;MQ=18.87;MQ0=23;MQRankSum=2.606;QD=4.56;ReadPosRankSum=1.894;SB=-2.480e+02	GT:AD:DP:GQ:PL	0/1:61,71:132:99:636,0,547
chrXIV	782577	.	C	A	51.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.84;MQ0=26;MQRankSum=1.110;QD=1.27;ReadPosRankSum=-1.763;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:26,13:41:9:84,9,0
chrXIV	782591	.	G	A	72.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.690;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.81;MQ0=29;MQRankSum=1.221;QD=1.54;ReadPosRankSum=-0.903;SB=-2.563e-01	GT:AD:DP:GQ:PL	1/1:32,15:47:12:105,12,0
chrXIV	783336	.	G	A	791	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=166;Dels=0.00;FS=24.461;HaplotypeScore=3.5235;MLEAC=2;MLEAF=1.00;MQ=20.42;MQ0=15;MQRankSum=-0.617;QD=4.77;ReadPosRankSum=2.398;SB=-6.530e-03	GT:AD:DP:GQ:PL	1/1:13,153:166:59:824,59,0
chrXIV	783342	.	G	A	679.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=4.112;DP=175;Dels=0.00;FS=38.668;HaplotypeScore=9.3244;MLEAC=2;MLEAF=1.00;MQ=20.50;MQ0=16;MQRankSum=0.058;QD=3.88;ReadPosRankSum=2.781;SB=-1.419e-01	GT:AD:DP:GQ:PL	1/1:22,153:175:18:712,18,0
chrXIV	783352	.	G	T	73.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.100;DP=171;Dels=0.01;FS=44.042;HaplotypeScore=23.2345;MLEAC=2;MLEAF=1.00;MQ=20.35;MQ0=14;MQRankSum=-1.860;QD=0.43;ReadPosRankSum=-2.770;SB=-4.251e+01	GT:AD:DP:GQ:PL	1/1:145,25:170:12:106,12,0
chrXIV	783361	.	A	C	1312	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.128;DP=236;Dels=0.00;FS=8.022;HaplotypeScore=150.7820;MLEAC=2;MLEAF=1.00;MQ=20.58;MQ0=24;MQRankSum=-1.151;QD=5.56;ReadPosRankSum=1.209;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:4,230:236:99:1345,162,0
chrXIV	783396	.	T	C	24.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.271;DP=349;Dels=0.00;FS=47.026;HaplotypeScore=106.9397;MLEAC=1;MLEAF=0.500;MQ=19.61;MQ0=34;MQRankSum=2.163;QD=0.07;ReadPosRankSum=3.713;SB=-1.201e+01	GT:AD:DP:GQ:PL	0/1:323,26:349:54:54,0,1275
chrXIV	783398	.	C	T	159.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.465;DP=347;Dels=0.00;FS=93.327;HaplotypeScore=105.3623;MLEAC=1;MLEAF=0.500;MQ=19.54;MQ0=33;MQRankSum=-1.578;QD=0.46;ReadPosRankSum=5.494;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:219,63:347:99:189,0,1107
chrXIV	783418	.	T	C	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;DP=307;Dels=0.00;FS=48.280;HaplotypeScore=22.5358;MLEAC=1;MLEAF=0.500;MQ=19.14;MQ0=32;MQRankSum=1.639;QD=0.08;ReadPosRankSum=-2.246;SB=-2.007e+00	GT:AD:DP:GQ:PL	0/1:282,25:307:56:56,0,856
chrXIV	783429	.	G	T	371.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.339;DP=284;Dels=0.00;FS=20.216;HaplotypeScore=35.6146;MLEAC=1;MLEAF=0.500;MQ=19.07;MQ0=28;MQRankSum=4.630;QD=1.31;ReadPosRankSum=-3.733;SB=-1.601e+01	GT:AD:DP:GQ:PL	0/1:158,126:284:99:401,0,432
chrXIV	783436	.	A	G	327.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.669;DP=270;Dels=0.00;FS=17.537;HaplotypeScore=56.0240;MLEAC=1;MLEAF=0.500;MQ=19.24;MQ0=23;MQRankSum=4.400;QD=1.21;ReadPosRankSum=-2.862;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:155,115:270:99:357,0,447
chrXIV	783437	.	A	G	58.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.507;DP=268;Dels=0.00;FS=4.368;HaplotypeScore=67.7251;MLEAC=1;MLEAF=0.500;MQ=19.33;MQ0=23;MQRankSum=0.889;QD=0.22;ReadPosRankSum=5.698;SB=-2.042e+00	GT:AD:DP:GQ:PL	0/1:245,23:268:88:88,0,786
chrXIV	783442	.	T	C	236.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.715;DP=238;Dels=0.00;FS=9.254;HaplotypeScore=130.1647;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=20;MQRankSum=5.213;QD=0.99;ReadPosRankSum=-0.688;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:145,93:238:99:266,0,458
chrXIV	783444	.	G	A	289.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.045;DP=233;Dels=0.00;FS=9.236;HaplotypeScore=130.1647;MLEAC=1;MLEAF=0.500;MQ=19.06;MQ0=20;MQRankSum=5.007;QD=1.24;ReadPosRankSum=-1.124;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:139,94:233:99:319,0,452
chrXIV	783448	.	C	G	170.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.821;DP=198;Dels=0.00;FS=11.733;HaplotypeScore=179.5674;MLEAC=1;MLEAF=0.500;MQ=18.44;MQ0=15;MQRankSum=4.038;QD=0.86;ReadPosRankSum=1.261;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:125,73:198:99:200,0,381
chrXIV	783449	.	G	A	500.76	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=4.423;DP=193;Dels=0.00;FS=1.888;HaplotypeScore=178.5940;MLEAC=2;MLEAF=1.00;MQ=18.24;MQ0=15;MQRankSum=6.557;QD=2.59;ReadPosRankSum=3.115;SB=-4.176e+01	GT:AD:DP:GQ:PL	1/1:87,106:193:6:532,6,0
chrXIV	783451	.	C	T	505.19	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.751;DP=191;Dels=0.00;FS=1.909;HaplotypeScore=178.5940;MLEAC=2;MLEAF=1.00;MQ=17.78;MQ0=15;MQRankSum=6.099;QD=2.64;ReadPosRankSum=3.645;SB=-4.119e+01	GT:AD:DP:GQ:PL	1/1:86,104:191:8:537,8,0
chrXIV	783485	.	G	A	194.01	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=17.80;MQ0=25;MQRankSum=0.654;QD=2.77;ReadPosRankSum=1.655;SB=-2.382e-02	GT:AD:DP:GQ:PL	1/1:19,51:70:27:227,27,0
chrXIV	783490	.	A	C	183.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.314;DP=61;Dels=0.00;FS=14.771;HaplotypeScore=5.2823;MLEAC=2;MLEAF=1.00;MQ=17.16;MQ0=25;MQRankSum=2.037;QD=3.00;ReadPosRankSum=2.314;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:22,39:61:24:216,24,0
chrXIV	783491	.	G	T	177.03	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.822;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.2823;MLEAC=2;MLEAF=1.00;MQ=17.44;MQ0=25;MQRankSum=2.368;QD=3.00;ReadPosRankSum=1.275;SB=-4.096e-02	GT:AD:DP:GQ:PL	1/1:23,36:59:24:210,24,0
chrXIV	783500	.	A	G	73.79	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;DP=53;Dels=0.00;FS=5.358;HaplotypeScore=3.5215;MLEAC=1;MLEAF=0.500;MQ=17.06;MQ0=22;MQRankSum=1.557;QD=1.39;ReadPosRankSum=0.971;SB=-7.895e-01	GT:AD:DP:GQ:PL	0/1:25,28:53:4:103,0,4
chrXIV	783507	.	T	A	119.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.6214;MLEAC=2;MLEAF=1.00;MQ=15.88;MQ0=22;MQRankSum=0.933;QD=2.48;ReadPosRankSum=1.600;SB=-1.419e-01	GT:AD:DP:GQ:PL	1/1:1,47:48:18:152,18,0
chrXIV	783607	.	G	A	219.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.777;DP=18;Dels=0.00;FS=19.117;HaplotypeScore=7.7871;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;MQRankSum=-1.896;QD=12.17;ReadPosRankSum=1.896;SB=-2.163e-02	GT:AD:DP:GQ:PL	1/1:3,15:18:27:252,27,0
chrXIV	783714	.	G	A	156.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.021;DP=232;Dels=0.00;FS=12.491;HaplotypeScore=111.7700;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=18;MQRankSum=1.714;QD=0.67;ReadPosRankSum=-1.893;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:197,33:231:99:186,0,1973
chrXIV	783722	.	A	G	477.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;DP=254;Dels=0.00;FS=24.299;HaplotypeScore=127.0059;MLEAC=1;MLEAF=0.500;MQ=25.19;MQ0=18;MQRankSum=-1.150;QD=1.88;ReadPosRankSum=-0.276;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:164,88:254:99:507,0,1425
chrXIV	783724	.	G	A	460.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;DP=266;Dels=0.00;FS=1.100;HaplotypeScore=118.9208;MLEAC=1;MLEAF=0.500;MQ=25.04;MQ0=19;MQRankSum=1.353;QD=1.73;ReadPosRankSum=2.981;SB=-2.600e+02	GT:AD:DP:GQ:PL	0/1:185,78:266:99:490,0,1512
chrXIV	783763	.	T	A	633.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;DP=286;Dels=0.00;FS=21.955;HaplotypeScore=84.7151;MLEAC=1;MLEAF=0.500;MQ=24.76;MQ0=22;MQRankSum=-0.271;QD=2.21;ReadPosRankSum=1.288;SB=-1.270e+02	GT:AD:DP:GQ:PL	0/1:215,68:286:99:663,0,2217
chrXIV	783796	.	G	T	153.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;DP=221;Dels=0.00;FS=15.002;HaplotypeScore=129.8987;MLEAC=1;MLEAF=0.500;MQ=26.11;MQ0=4;MQRankSum=-0.620;QD=0.69;ReadPosRankSum=0.026;SB=-4.001e+01	GT:AD:DP:GQ:PL	0/1:158,61:221:99:183,0,1958
chrXIV	783929	.	A	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=17.6717;MLEAC=2;MLEAF=1.00;MQ=25.55;MQ0=1;MQRankSum=-1.393;QD=1.09;ReadPosRankSum=-0.696;SB=-4.557e+01	GT:AD:DP:GQ:PL	1/1:1,9:21:6:54,6,0
chrXIV	783942	.	G	A	11.36	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DP=28;Dels=0.00;FS=29.172;HaplotypeScore=17.4400;MLEAC=1;MLEAF=0.500;MQ=25.66;MQ0=1;MQRankSum=2.186;QD=0.41;ReadPosRankSum=2.597;SB=-7.029e+00	GT:AD:DP:GQ:PL	0/1:19,9:28:19:41,0,19
chrXIV	783945	.	G	A	12.31	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;DP=29;Dels=0.00;FS=30.380;HaplotypeScore=18.3508;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=1;MQRankSum=0.935;QD=0.42;ReadPosRankSum=2.706;SB=-6.047e+00	GT:AD:DP:GQ:PL	0/1:20,9:29:17:42,0,17
chrXIV	783946	.	G	T	21.50	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.884;DP=29;Dels=0.00;FS=13.919;HaplotypeScore=18.3508;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=1;MQRankSum=0.530;QD=0.74;ReadPosRankSum=0.766;SB=-5.497e+00	GT:AD:DP:GQ:PL	1/1:7,9:29:6:52,6,0
chrXIV	783968	.	C	A,G	62.27	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.818;DP=27;Dels=0.00;FS=10.414;HaplotypeScore=17.5458;MLEAC=1,1;MLEAF=0.500,0.500;MQ=25.08;MQ0=1;MQRankSum=1.299;QD=2.31;ReadPosRankSum=-2.165;SB=-1.663e+02	GT:AD:DP:GQ:PL	1/2:2,15,10:27:40:122,49,40,73,0,67
chrXIV	783972	.	A	G,T	57.64	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.254;DP=26;Dels=0.00;FS=7.375;HaplotypeScore=29.2198;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.92;MQ0=1;MQRankSum=1.553;QD=2.22;ReadPosRankSum=-1.953;SB=-1.466e+02	GT:AD:DP:GQ:PL	1/2:2,7,17:26:36:117,72,66,45,0,36
chrXIV	783973	.	A	G	40.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;DP=26;Dels=0.00;FS=7.437;HaplotypeScore=43.8889;MLEAC=1;MLEAF=0.500;MQ=24.92;MQ0=1;MQRankSum=0.159;QD=1.54;ReadPosRankSum=0.350;SB=-1.278e+02	GT:AD:DP:GQ:PL	0/1:6,20:26:38:70,0,38
chrXIV	784045	.	G	T	90.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;DP=78;Dels=0.03;FS=12.361;HaplotypeScore=124.9489;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=2;MQRankSum=2.776;QD=1.15;ReadPosRankSum=2.121;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:63,13:76:99:120,0,133
chrXIV	784060	.	G	T	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;DP=107;Dels=0.05;FS=2.537;HaplotypeScore=167.1338;MLEAC=1;MLEAF=0.500;MQ=22.81;MQ0=3;MQRankSum=-0.038;QD=0.24;ReadPosRankSum=-1.783;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:90,12:102:56:56,0,199
chrXV	48	.	A	C	68.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;DP=29;Dels=0.00;FS=5.969;HaplotypeScore=19.9051;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=6;MQRankSum=0.472;QD=2.35;ReadPosRankSum=0.409;SB=-6.547e-03	GT:AD:DP:GQ:PL	0/1:20,9:29:49:98,0,49
chrXV	281	.	C	T	12.04	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=3.7785;MLEAC=2;MLEAF=1.00;MQ=21.31;MQ0=0;MQRankSum=0.751;QD=1.34;ReadPosRankSum=-0.751;SB=-6.626e+01	GT:AD:DP:GQ:PL	1/1:1,8:9:6:43,6,0
chrXV	333	.	T	C	93.26	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.93;MQ0=1;QD=11.66;SB=-1.373e-01	GT:AD:DP:GQ:PL	1/1:0,8:8:15:126,15,0
chrXV	348	.	T	C	56.09	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;DP=15;Dels=0.00;FS=6.560;HaplotypeScore=3.8729;MLEAC=1;MLEAF=0.500;MQ=24.01;MQ0=1;MQRankSum=0.267;QD=3.74;ReadPosRankSum=2.800;SB=-9.211e-02	GT:AD:DP:GQ:PL	0/1:10,5:15:14:86,0,14
chrXV	380	.	C	T	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=23.05;MQ0=2;MQRankSum=-1.240;QD=1.18;ReadPosRankSum=-2.938;SB=-1.001e+01	GT:AD:DP:GQ:PL	0/1:12,5:17:40:50,0,40
chrXV	746	.	C	T	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.55;MQ0=16;QD=1.19;SB=-7.990e-01	GT:AD:DP:GQ:PL	1/1:16,4:20:6:55,6,0
chrXV	764	.	G	T	11.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.04;MQ0=17;MQRankSum=0.922;QD=0.45;ReadPosRankSum=0.922;SB=-6.520e-03	GT:AD:DP:GQ:PL	0/1:21,4:25:41:41,0,68
chrXV	765	.	T	C	30.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.04;MQ0=17;MQRankSum=-0.421;QD=1.20;ReadPosRankSum=-0.922;SB=-6.656e-03	GT:AD:DP:GQ:PL	0/1:21,4:25:42:60,0,42
chrXV	767	.	A	G	12.27	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.16;MQ0=17;MQRankSum=0.876;QD=0.47;ReadPosRankSum=1.307;SB=-6.524e-03	GT:AD:DP:GQ:PL	0/1:22,4:26:42:42,0,57
chrXV	770	.	G	A	98.26	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.23;MQ0=17;QD=3.93;SB=-2.044e-01	GT:AD:DP:GQ:PL	1/1:0,25:25:15:131,15,0
chrXV	783	.	C	T	29.01	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.23;MQ0=17;MQRankSum=0.322;QD=1.16;ReadPosRankSum=0.322;SB=-4.473e-03	GT:AD:DP:GQ:PL	0/1:20,5:25:35:59,0,35
chrXV	818	.	T	C	33.05	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DP=28;Dels=0.04;FS=9.700;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=12.87;MQ0=20;MQRankSum=-0.322;QD=1.18;ReadPosRankSum=1.920;SB=0.085	GT:AD:DP:GQ:PL	0/1:22,5:27:17:63,0,17
chrXV	827	.	A	C	10.42	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;DP=22;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.14;MQ0=15;MQRankSum=0.198;QD=0.47;ReadPosRankSum=-1.495;SB=-1.249e+00	GT:AD:DP:GQ:PL	0/1:19,3:22:40:40,0,66
chrXV	851	.	A	G	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=7;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.47;MQ0=3;MQRankSum=-1.026;QD=3.40;ReadPosRankSum=1.026;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,5:7:6:55,6,0
chrXV	881	.	G	T	12.37	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.02;MQ0=3;MQRankSum=0.736;QD=2.06;ReadPosRankSum=0.736;SB=-1.357e+00	GT:AD:DP:GQ:PL	0/1:3,3:6:13:42,0,13
chrXV	884	.	T	A	36.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.83;MQ0=4;QD=5.28;SB=-2.121e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:9:69,9,0
chrXV	886	.	A	T	12.37	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=7;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.83;MQ0=4;MQRankSum=0.736;QD=1.77;ReadPosRankSum=0.736;SB=-1.357e+00	GT:AD:DP:GQ:PL	0/1:4,3:7:13:42,0,13
chrXV	976	.	T	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.51;MQ0=2;QD=5.70;SB=-2.476e+01	GT:AD:DP:GQ:PL	1/1:0,3:4:6:54,6,0
chrXV	989	.	T	C	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;QD=10.40;SB=-2.376e+01	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chrXV	11298	.	G	A	41.97	filter	AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.14;MQ0=3;QD=7.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,3:6:9:74,9,0
chrXV	11545	.	G	A	94.26	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.21;MQ0=0;QD=9.43;SB=-2.476e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:127,15,0
chrXV	11548	.	T	C	93.26	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.21;MQ0=0;QD=9.33;SB=-2.476e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:15:126,15,0
chrXV	11613	.	G	C	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.727;DP=4;Dels=0.00;FS=6.021;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=19.08;MQ0=0;MQRankSum=0.727;QD=4.46;ReadPosRankSum=-0.727;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,3:4:6:49,6,0
chrXV	22478	.	A	T	70.51	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=18.99;MQ0=0;QD=3.53;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:0,20:20:12:103,12,0
chrXV	22765	.	T	G	294	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.012;DP=26;Dels=0.00;FS=3.140;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=19.85;MQ0=9;MQRankSum=-0.522;QD=11.31;ReadPosRankSum=1.416;SB=-1.579e+02	GT:AD:DP:GQ:PL	1/1:2,24:26:39:327,39,0
chrXV	22833	.	G	A	769	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.35;MQ0=0;QD=21.97;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:93:802,93,0
chrXV	22887	.	A	G	290	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=16.35;MQ0=12;MQRankSum=-0.400;QD=7.44;ReadPosRankSum=1.600;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:4,34:39:39:323,39,0
chrXV	23197	.	C	T	51.97	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=1;QD=10.39;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:5:9:84,9,0
chrXV	23200	.	A	G	49.97	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.10;MQ0=1;QD=9.99;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:5:9:82,9,0
chrXV	23283	.	T	C	877	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=26.14;MQ0=25;MQRankSum=1.027;QD=11.10;ReadPosRankSum=-1.732;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:12,67:79:87:910,87,0
chrXV	23419	.	T	C	238	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=4;QD=11.90;SB=-1.492e-02	GT:AD:DP:GQ:PL	1/1:0,20:20:30:271,30,0
chrXV	23443	.	T	C	158.06	filter	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.89;MQ0=6;QD=9.30;SB=-6.629e-02	GT:AD:DP:GQ:PL	1/1:0,17:17:21:191,21,0
chrXV	24046	.	G	A	225.01	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.90;MQ0=7;QD=8.33;SB=-2.354e-02	GT:AD:DP:GQ:PL	1/1:3,24:27:27:258,27,0
chrXV	24109	.	G	A	443	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.261;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.32;MQ0=2;MQRankSum=2.069;QD=15.82;ReadPosRankSum=0.818;SB=-1.320e-02	GT:AD:DP:GQ:PL	1/1:3,25:28:31:476,31,0
chrXV	24115	.	T	C	393	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.678;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=1;MQRankSum=2.109;QD=13.10;ReadPosRankSum=-0.043;SB=-1.339e-02	GT:AD:DP:GQ:PL	1/1:3,27:30:31:426,31,0
chrXV	24151	.	A	G	238.41	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;MQRankSum=-0.037;QD=9.54;ReadPosRankSum=1.075;SB=-2.742e+01	GT:AD:DP:GQ:PL	1/1:4,21:25:13:271,13,0
chrXV	24190	.	C	A	102.26	PASS	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.52;SB=-2.226e+01	GT:AD:DP:GQ:PL	1/1:0,12:12:15:135,15,0
chrXV	24302	.	T	C	50.97	PASS	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.70;MQ0=2;QD=10.19;SB=-2.521e+01	GT:AD:DP:GQ:PL	1/1:0,5:5:9:83,9,0
chrXV	24315	.	T	C	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.51;MQ0=2;QD=6.44;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:6:57,6,0
chrXV	24352	.	C	T	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chrXV	24577	.	G	C	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:55,6,0
chrXV	24588	.	G	T	27.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.89;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:59,6,0
chrXV	24590	.	C	A	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.39;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
chrXV	25746	.	T	C	337	filter	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.00;MQ0=3;QD=9.91;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,34:34:39:370,39,0
chrXV	25809	.	C	A	56.97	filter	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.76;MQ0=5;QD=7.12;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,8:8:9:89,9,0
chrXV	26097	.	C	T	365.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=29.92;MQ0=6;MQRankSum=0.586;QD=8.90;ReadPosRankSum=-0.195;SB=-4.401e+01	GT:AD:DP:GQ:PL	0/1:15,26:41:99:395,0,120
chrXV	27212	.	A	T	55.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;DP=30;Dels=0.00;FS=7.858;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=19.81;MQ0=11;MQRankSum=3.427;QD=1.83;ReadPosRankSum=-2.931;SB=-3.125e+01	GT:AD:DP:GQ:PL	0/1:22,8:30:85:85,0,145
chrXV	27254	.	A	T	1027	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=24.60;MQ0=6;MQRankSum=1.650;QD=21.40;ReadPosRankSum=0.743;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:7,41:48:99:1060,120,0
chrXV	27306	.	C	T	1323	filter	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.58;MQ0=27;QD=17.18;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:19,58:77:99:1356,150,0
chrXV	27321	.	T	C	704	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.94;MQ0=34;QD=10.51;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:25,41:67:87:737,87,0
chrXV	27322	.	C	G	697	filter	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.64;MQ0=35;QD=10.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:26,41:67:87:730,87,0
chrXV	27515	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.3884;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=1;MQRankSum=-1.347;QD=20.03;ReadPosRankSum=1.684;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1495,162,0
chrXV	27536	.	G	A	53.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.905;DP=57;Dels=0.00;FS=13.470;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=23.32;MQ0=8;MQRankSum=1.743;QD=0.93;ReadPosRankSum=0.219;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,9:57:83:83,0,633
chrXV	27553	.	T	C	71.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.318;DP=45;Dels=0.00;FS=14.726;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=23.15;MQ0=9;MQRankSum=1.405;QD=1.58;ReadPosRankSum=2.459;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:35,9:45:99:101,0,401
chrXV	27563	.	T	C	147.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443;DP=41;Dels=0.00;FS=22.424;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=23.02;MQ0=11;MQRankSum=0.765;QD=3.59;ReadPosRankSum=0.173;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:24,16:41:99:177,0,172
chrXV	27575	.	C	A	292.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;DP=46;Dels=0.00;FS=40.531;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=13;MQRankSum=-0.903;QD=6.35;ReadPosRankSum=2.620;SB=-3.010e+00	GT:AD:DP:GQ:PL	0/1:19,26:46:75:322,0,75
chrXV	27588	.	A	G	337.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;DP=49;Dels=0.00;FS=46.663;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.60;MQ0=15;MQRankSum=-1.951;QD=6.88;ReadPosRankSum=1.737;SB=-3.022e+00	GT:AD:DP:GQ:PL	0/1:19,30:49:26:367,0,26
chrXV	27589	.	T	A	356.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;DP=50;Dels=0.00;FS=55.114;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=15;MQRankSum=-1.909;QD=7.12;ReadPosRankSum=2.192;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:20,30:50:47:386,0,47
chrXV	27624	.	T	C	429.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380;DP=64;Dels=0.00;FS=97.142;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=24.38;MQ0=17;MQRankSum=-1.027;QD=6.70;ReadPosRankSum=-2.067;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:27,37:64:99:459,0,193
chrXV	27644	.	T	C	444.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;DP=81;Dels=0.00;FS=107.789;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=22.84;MQ0=28;MQRankSum=-2.976;QD=5.48;ReadPosRankSum=-3.238;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:42,39:81:99:474,0,230
chrXV	27648	.	T	A	37.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;DP=55;Dels=0.00;FS=61.262;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=19.52;MQ0=28;MQRankSum=-2.014;QD=0.67;ReadPosRankSum=1.480;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:41,14:55:67:67,0,318
chrXV	27650	.	C	T	32.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;DP=54;Dels=0.00;FS=61.262;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=19.70;MQ0=27;MQRankSum=-2.645;QD=0.59;ReadPosRankSum=1.771;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:40,13:54:62:62,0,291
chrXV	27651	.	C	T	37.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;DP=54;Dels=0.00;FS=50.078;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.49;MQ0=27;MQRankSum=-2.451;QD=0.69;ReadPosRankSum=1.383;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:40,14:54:67:67,0,278
chrXV	27653	.	T	C	35.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;DP=56;Dels=0.00;FS=61.262;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=28;MQRankSum=-2.994;QD=0.63;ReadPosRankSum=2.119;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:43,13:56:65:65,0,293
chrXV	27655	.	A	C	39.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;DP=56;Dels=0.00;FS=61.262;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=28;MQRankSum=-2.626;QD=0.70;ReadPosRankSum=2.119;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:43,13:56:69:69,0,289
chrXV	27656	.	G	A	36.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;DP=56;Dels=0.00;FS=61.262;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=28;MQRankSum=-2.902;QD=0.64;ReadPosRankSum=2.165;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:43,13:56:66:66,0,297
chrXV	27660	.	C	T	98.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.994;DP=58;Dels=0.00;FS=61.262;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.39;MQ0=30;MQRankSum=-3.409;QD=1.69;ReadPosRankSum=2.534;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:45,13:58:99:128,0,319
chrXV	27661	.	A	T	100.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;DP=59;Dels=0.00;FS=61.262;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=19.22;MQ0=31;MQRankSum=-3.501;QD=1.70;ReadPosRankSum=2.488;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:45,14:59:99:130,0,331
chrXV	27666	.	A	G	124.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.685;DP=60;Dels=0.00;FS=61.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.06;MQ0=32;MQRankSum=-2.211;QD=2.07;ReadPosRankSum=1.981;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:47,13:60:99:154,0,297
chrXV	27669	.	G	A	127.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.276;DP=58;Dels=0.00;FS=61.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=31;MQRankSum=-2.693;QD=2.19;ReadPosRankSum=1.092;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:45,13:58:99:157,0,296
chrXV	27672	.	T	G	123.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DP=58;Dels=0.00;FS=61.262;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=19.01;MQ0=31;MQRankSum=-2.451;QD=2.12;ReadPosRankSum=0.849;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:45,13:58:99:153,0,296
chrXV	27674	.	G	A	126.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.308;DP=57;Dels=0.00;FS=55.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.79;MQ0=31;MQRankSum=-2.667;QD=2.21;ReadPosRankSum=-0.564;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:44,13:57:99:156,0,250
chrXV	27675	.	C	T	126.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;DP=58;Dels=0.00;FS=55.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.62;MQ0=32;MQRankSum=-2.667;QD=2.17;ReadPosRankSum=-0.564;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:44,14:58:99:156,0,278
chrXV	27677	.	A	G	122.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;DP=56;Dels=0.00;FS=55.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.95;MQ0=30;MQRankSum=-2.667;QD=2.18;ReadPosRankSum=-0.564;SB=-3.016e+00	GT:AD:DP:GQ:PL	0/1:43,13:56:99:152,0,276
chrXV	27694	.	T	C	66.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DP=59;Dels=0.00;FS=41.720;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.14;MQ0=36;MQRankSum=-2.370;QD=1.12;ReadPosRankSum=-1.323;SB=-1.249e+00	GT:AD:DP:GQ:PL	0/1:48,11:59:96:96,0,236
chrXV	27697	.	A	G	64.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DP=58;Dels=0.00;FS=36.553;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.43;MQ0=37;MQRankSum=-2.359;QD=1.10;ReadPosRankSum=-1.796;SB=-1.249e+00	GT:AD:DP:GQ:PL	0/1:48,10:58:94:94,0,221
chrXV	27698	.	A	C	62.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;DP=59;Dels=0.00;FS=33.350;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.95;MQ0=37;MQRankSum=-2.670;QD=1.05;ReadPosRankSum=-2.209;SB=0.037	GT:AD:DP:GQ:PL	0/1:49,10:59:92:92,0,238
chrXV	27705	.	T	C	191.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=56;Dels=0.00;FS=23.373;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.84;MQ0=34;MQRankSum=1.528;QD=3.41;ReadPosRankSum=3.802;SB=-2.598e+01	GT:AD:DP:GQ:PL	0/1:10,44:56:53:221,0,53
chrXV	27751	.	C	G	160.06	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.68;MQ0=26;QD=4.21;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:21:193,21,0
chrXV	28401	.	A	T	21.79	LowQual;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.81;MQ0=2;QD=5.45;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:6:53,6,0
chrXV	28454	.	C	T	76.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=3;QD=3.33;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,23:23:12:109,12,0
chrXV	28456	.	A	T	80.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.41;MQ0=3;QD=3.50;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,22:22:12:113,12,0
chrXV	28462	.	C	T	72.51	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=2;QD=2.90;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,25:25:12:105,12,0
chrXV	28503	.	G	A	334	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.32;MQ0=0;QD=10.12;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:39:367,39,0
chrXV	28544	.	G	T	282	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.70;MQ0=3;QD=12.82;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:33:315,33,0
chrXV	28642	.	C	T	2356	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=3;QD=23.33;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2389,252,0
chrXV	28893	.	C	A	1748	filter	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=35.27;MQ0=10;QD=19.42;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1781,189,0
chrXV	29123	.	G	A	215.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.211;DP=100;Dels=0.00;FS=2.350;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=26.80;MQ0=7;MQRankSum=-2.923;QD=2.15;ReadPosRankSum=0.593;SB=-2.901e+01	GT:AD:DP:GQ:PL	0/1:59,40:100:99:245,0,1012
chrXV	29144	.	A	G	2060	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=117;Dels=0.00;FS=7.443;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=26.55;MQ0=5;MQRankSum=1.139;QD=17.61;ReadPosRankSum=1.701;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:1,113:117:99:2093,243,0
chrXV	29207	.	A	G	541.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=16.1230;MLEAC=1;MLEAF=0.500;MQ=30.21;MQ0=6;MQRankSum=-4.194;QD=3.78;ReadPosRankSum=1.920;SB=-4.290e+02	GT:AD:DP:GQ:PL	0/1:90,52:143:99:571,0,1322
chrXV	29219	.	G	A	332.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.625;DP=126;Dels=0.00;FS=0.716;HaplotypeScore=8.0973;MLEAC=1;MLEAF=0.500;MQ=30.66;MQ0=5;MQRankSum=-5.992;QD=2.63;ReadPosRankSum=-0.136;SB=-3.540e+02	GT:AD:DP:GQ:PL	0/1:81,43:126:99:362,0,1362
chrXV	29224	.	C	T	299.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.808;DP=117;Dels=0.00;FS=0.746;HaplotypeScore=9.0627;MLEAC=1;MLEAF=0.500;MQ=31.04;MQ0=4;MQRankSum=-4.593;QD=2.56;ReadPosRankSum=-1.422;SB=-2.820e+02	GT:AD:DP:GQ:PL	0/1:78,39:117:99:329,0,1327
chrXV	29234	.	A	G	244.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843;DP=97;Dels=0.00;FS=1.774;HaplotypeScore=3.4205;MLEAC=1;MLEAF=0.500;MQ=31.28;MQ0=3;MQRankSum=-2.129;QD=2.52;ReadPosRankSum=-3.930;SB=-2.370e+02	GT:AD:DP:GQ:PL	0/1:67,30:97:99:274,0,1275
chrXV	29237	.	A	G	137.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;DP=93;Dels=0.00;FS=0.887;HaplotypeScore=3.2358;MLEAC=1;MLEAF=0.500;MQ=31.10;MQ0=3;MQRankSum=-4.261;QD=1.47;ReadPosRankSum=-3.738;SB=-1.840e+02	GT:AD:DP:GQ:PL	0/1:68,25:93:99:167,0,1188
chrXV	29249	.	A	G	46.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;DP=80;Dels=0.00;FS=10.885;HaplotypeScore=6.1858;MLEAC=1;MLEAF=0.500;MQ=29.44;MQ0=5;MQRankSum=-2.509;QD=0.58;ReadPosRankSum=-3.732;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:66,14:80:76:76,0,916
chrXV	29669	.	G	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=44.19;MQ0=0;QD=20.45;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1669,177,0
chrXV	29976	.	G	C	1486	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0900;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=18.12;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1519,165,0
chrXV	29984	.	T	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=14.12;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1120,126,0
chrXV	30709	.	A	G	1426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;MQRankSum=-0.048;QD=19.81;ReadPosRankSum=1.684;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1459,159,0
chrXV	30958	.	A	T	446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.625;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=3.7694;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;MQRankSum=-0.048;QD=16.52;ReadPosRankSum=2.261;SB=-1.840e+02	GT:AD:DP:GQ:PL	1/1:2,25:27:51:479,51,0
chrXV	30980	.	T	C	197.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;MQRankSum=-0.869;QD=15.15;ReadPosRankSum=1.159;SB=-4.625e+01	GT:AD:DP:GQ:PL	1/1:1,11:13:27:230,27,0
chrXV	30986	.	T	A	138.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=15.35;SB=-2.888e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:18:171,18,0
chrXV	30992	.	A	G	50.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.74;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:9:83,9,0
chrXV	30995	.	A	G	49.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.66;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,3:3:9:82,9,0
chrXV	31001	.	A	G	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.39;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chrXV	31004	.	G	C	15.88	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.94;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
chrXV	31103	.	A	T	162.06	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=8.10;SB=-1.971e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:21:195,21,0
chrXV	31160	.	T	C	497	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=13.43;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:530,60,0
chrXV	31199	.	C	G	244	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=12.20;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:30:277,30,0
chrXV	31369	.	A	T	854	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.59;MQ0=0;QD=18.57;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:887,96,0
chrXV	31394	.	C	T	744	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.03;MQ0=0;QD=19.58;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:777,81,0
chrXV	31429	.	T	C	204.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=0;MQRankSum=-0.533;QD=7.03;ReadPosRankSum=1.600;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:1,25:29:27:237,27,0
chrXV	31440	.	A	G	126.13	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=19.7576;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=5.26;SB=-2.131e+02	GT:AD:DP:GQ:PL	1/1:0,24:24:18:159,18,0
chrXV	31466	.	G	A	284	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.70;MQ0=0;QD=8.35;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:33:317,33,0
chrXV	31493	.	G	A	525	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.33;MQ0=0;QD=11.67;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:60:558,60,0
chrXV	31639	.	T	G	1251	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.543;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=-0.094;QD=22.75;ReadPosRankSum=1.669;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1284,141,0
chrXV	31674	.	C	A	1432	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=21.37;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1465,153,0
chrXV	31686	.	T	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;QD=20.49;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1365,144,0
chrXV	31776	.	A	G	939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=6.746;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=48.35;MQ0=0;MQRankSum=0.533;QD=18.06;ReadPosRankSum=1.666;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:972,105,0
chrXV	31789	.	G	A	894	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=17.19;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:927,99,0
chrXV	31790	.	T	A	917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;MQRankSum=0.069;QD=16.98;ReadPosRankSum=2.313;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:950,99,0
chrXV	31801	.	C	T	859	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=15.91;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:892,96,0
chrXV	31814	.	A	C	642	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.06;MQ0=0;QD=13.10;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:75:675,75,0
chrXV	31883	.	G	A	979	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=17.48;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1012,108,0
chrXV	31942	.	T	A	896	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=19.48;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:929,99,0
chrXV	31946	.	C	T	843	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.33;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:876,96,0
chrXV	31959	.	C	T	844	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=17.96;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:877,93,0
chrXV	31977	.	A	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.24;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1036,111,0
chrXV	32012	.	G	A	1069	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=49.2723;MLEAC=2;MLEAF=1.00;MQ=46.57;MQ0=0;QD=18.12;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1102,117,0
chrXV	32149	.	T	C	1549	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=21.82;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1582,174,0
chrXV	32177	.	G	C	1388	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=22.39;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1421,159,0
chrXV	32330	.	G	A	941	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.0746;MLEAC=2;MLEAF=1.00;MQ=49.09;MQ0=0;QD=18.45;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:974,102,0
chrXV	32374	.	A	G	764	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.26;MQ0=0;QD=15.92;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:797,87,0
chrXV	32379	.	C	T	778	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=16.21;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:811,84,0
chrXV	32386	.	C	A	624	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=41.6964;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=12.73;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:69:657,69,0
chrXV	32395	.	A	G	742	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=13.25;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:775,84,0
chrXV	32720	.	C	G	1354	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=22.20;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1387,150,0
chrXV	32791	.	A	G	1131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=4.277;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.89;MQ0=0;MQRankSum=-1.649;QD=13.63;ReadPosRankSum=1.690;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1164,129,0
chrXV	32803	.	T	C	974	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.34;MQ0=0;MQRankSum=-0.933;QD=12.49;ReadPosRankSum=-0.089;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1007,111,0
chrXV	32809	.	C	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=69.1529;MLEAC=2;MLEAF=1.00;MQ=30.78;MQ0=0;QD=12.14;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1053,114,0
chrXV	32838	.	C	T	756	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.55;MQ0=0;QD=10.36;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:84:789,84,0
chrXV	32855	.	A	G	714	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=10.06;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:81:747,81,0
chrXV	32865	.	C	T	788	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=11.59;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:87:821,87,0
chrXV	33217	.	A	C	2128	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.54;MQ0=0;QD=22.40;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2161,234,0
chrXV	33489	.	C	T	1833	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.08;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1866,195,0
chrXV	33511	.	C	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.77;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1887,204,0
chrXV	33546	.	T	C	1543	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.107;QD=21.43;ReadPosRankSum=1.684;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1576,171,0
chrXV	34103	.	C	G	1692	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=21.69;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1725,189,0
chrXV	34108	.	G	C	1611	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=21.48;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1644,180,0
chrXV	34748	.	G	A	1958	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.83;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1991,225,0
chrXV	34772	.	C	T	2005	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9377;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.89;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2038,222,0
chrXV	34951	.	T	C	1763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.185;DP=92;Dels=0.00;FS=12.538;HaplotypeScore=9.2539;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=0.958;QD=19.16;ReadPosRankSum=3.359;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:4,87:92:99:1796,201,0
chrXV	35297	.	A	G	2674	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.66;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2707,300,0
chrXV	35401	.	C	A	3437.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.76;SB=-1.624e+03	GT:AD:DP:GQ:PL	1/1:0,151:151:99:3437,360,0
chrXV	35414	.	C	T	3324.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=20.52;SB=-1.500e+03	GT:AD:DP:GQ:PL	1/1:0,160:162:99:3324,360,0
chrXV	35486	.	A	T	5067.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=212;Dels=0.00;FS=0.000;HaplotypeScore=9.9878;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.204;QD=23.90;ReadPosRankSum=2.426;SB=-1.791e+03	GT:AD:DP:GQ:PL	1/1:2,210:212:99:5067,532,0
chrXV	35544	.	G	T	2892	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=8.3047;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=20.37;SB=-1.302e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2925,315,0
chrXV	35596	.	A	T	2320	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=15.5866;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.02;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2353,249,0
chrXV	35666	.	A	G	2154	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;MQRankSum=0.082;QD=20.51;ReadPosRankSum=1.699;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2187,240,0
chrXV	35718	.	T	C	1946	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=19.46;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1979,216,0
chrXV	35742	.	G	C	1994	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;QD=19.94;SB=-1.242e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2027,222,0
chrXV	35747	.	G	T	2054	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.55;MQ0=0;QD=19.94;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2087,228,0
chrXV	35779	.	T	C	2068	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.51;MQ0=0;QD=18.97;SB=-1.496e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2101,225,0
chrXV	35788	.	T	A	1969	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=16.01;SB=-1.530e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2002,210,0
chrXV	35855	.	T	C	1792	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=18.10;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1825,204,0
chrXV	35866	.	A	C	1835	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=18.92;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1868,201,0
chrXV	35915	.	T	C	1908	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=20.30;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1941,213,0
chrXV	38001	.	C	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.41;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1510,165,0
chrXV	38127	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.70;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1747,183,0
chrXV	38177	.	A	C	1720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.507;QD=20.72;ReadPosRankSum=1.648;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1753,198,0
chrXV	38224	.	T	G	1773	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.33;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1806,192,0
chrXV	38675	.	T	C	1179	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.677;QD=18.71;ReadPosRankSum=1.677;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1212,132,0
chrXV	38726	.	T	G	765	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=14.43;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,49:53:90:798,90,0
chrXV	38741	.	A	C	732	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.27;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:765,81,0
chrXV	38791	.	A	C	751	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=17.88;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:784,87,0
chrXV	38812	.	A	G	699	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=16.64;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:78:732,78,0
chrXV	38827	.	G	A	840	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=18.67;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:873,93,0
chrXV	38891	.	G	A	1767	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.09;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1800,198,0
chrXV	39064	.	A	G	1931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=6.638;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;MQRankSum=-0.814;QD=23.27;ReadPosRankSum=1.690;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1964,210,0
chrXV	39352	.	T	G	1873	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=111;Dels=0.00;FS=3.940;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=41.06;MQ0=0;MQRankSum=0.874;QD=16.87;ReadPosRankSum=-0.810;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:1,108:111:99:1906,219,0
chrXV	39353	.	G	A	1906	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.209;DP=106;Dels=0.00;FS=4.125;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=40.59;MQ0=0;MQRankSum=-0.490;QD=17.98;ReadPosRankSum=-1.013;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1939,219,0
chrXV	39380	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;QD=16.41;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1838,204,0
chrXV	39382	.	G	A	1783	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=3.338;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.89;MQ0=0;MQRankSum=0.693;QD=16.21;ReadPosRankSum=-0.850;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:99:1816,195,0
chrXV	39402	.	G	C	1194	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=14.39;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1227,132,0
chrXV	39403	.	T	C	1209	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;QD=14.74;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1242,132,0
chrXV	39405	.	T	A	1241	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=14.95;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1274,135,0
chrXV	39407	.	T	C	1172	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.34;MQ0=0;QD=14.12;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1205,135,0
chrXV	39416	.	A	G	1121	SnpCluster	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=12.32;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1154,129,0
chrXV	39418	.	G	C	1146	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=0;QD=12.06;SB=-1.279e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1179,129,0
chrXV	39421	.	A	G	1173	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.68;MQ0=0;QD=12.35;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1206,132,0
chrXV	39499	.	A	T	1776	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.66;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1809,189,0
chrXV	39574	.	T	C	1919	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.96;MQ0=0;QD=20.63;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1952,213,0
chrXV	39595	.	A	G	1627	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.08;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1660,186,0
chrXV	39607	.	A	C	1560	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=16.60;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1593,177,0
chrXV	39625	.	T	C	1620	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=16.53;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1653,183,0
chrXV	39657	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.7515;MLEAC=2;MLEAF=1.00;MQ=45.87;MQ0=0;QD=13.59;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1487,156,0
chrXV	39668	.	C	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.2054;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=13.09;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,121:129:99:1722,192,0
chrXV	39768	.	C	T	2417	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=24.41;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2450,261,0
chrXV	39805	.	C	T	1871	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.54;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1904,198,0
chrXV	39855	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.20;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1245,138,0
chrXV	39893	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6451;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.25;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1566,174,0
chrXV	40198	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.353;QD=22.49;ReadPosRankSum=1.678;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1495,162,0
chrXV	40227	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.17;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1604,168,0
chrXV	40304	.	T	C	1970	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=3.016;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-2.264;QD=21.18;ReadPosRankSum=2.397;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2003,222,0
chrXV	40440	.	C	T	2496	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.5609;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2529,267,0
chrXV	40513	.	G	A	2090	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.23;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2123,237,0
chrXV	40593	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.32;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1598,174,0
chrXV	40684	.	C	A	3364.01	PASS	AC=2;AF=1.00;AN=2;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.29;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:0,158:158:99:3364,351,0
chrXV	40848	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.42;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1378,147,0
chrXV	41050	.	A	G	1540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.295;QD=19.49;ReadPosRankSum=2.107;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1573,174,0
chrXV	41257	.	G	C	1158	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.05;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1191,129,0
chrXV	41308	.	G	T	1084	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=21.68;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1117,117,0
chrXV	41470	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=4.472;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.396;QD=18.26;ReadPosRankSum=1.683;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1311,144,0
chrXV	41495	.	C	T	1581	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.53;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1614,168,0
chrXV	41788	.	A	T	1212	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=15.34;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1245,135,0
chrXV	41838	.	G	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8172;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.71;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1444,150,0
chrXV	42175	.	G	A	1050	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.81;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1083,120,0
chrXV	42219	.	A	C	1270	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.602;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.031;QD=22.68;ReadPosRankSum=1.669;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1303,147,0
chrXV	42290	.	A	G	1207	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.18;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1240,135,0
chrXV	42291	.	T	C	1150	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=20.54;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1183,129,0
chrXV	42529	.	C	T	921	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.46;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:954,99,0
chrXV	42832	.	A	G	1656	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=77;Dels=0.00;FS=12.964;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;MQRankSum=-1.425;QD=21.51;ReadPosRankSum=2.823;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:3,71:77:99:1689,183,0
chrXV	42859	.	A	G	1584	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.895;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=49.11;MQ0=0;MQRankSum=-0.659;QD=22.00;ReadPosRankSum=1.586;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1617,177,0
chrXV	42969	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.46;MQ0=0;QD=23.16;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1353,141,0
chrXV	43092	.	A	G	421	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.71;MQ0=0;QD=6.58;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:48:454,48,0
chrXV	43143	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=33.12;MQ0=0;QD=15.84;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1237,135,0
chrXV	43153	.	A	G	1284	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=72.4881;MLEAC=2;MLEAF=1.00;MQ=31.87;MQ0=0;QD=16.25;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1317,141,0
chrXV	43170	.	T	C	1186	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=29.47;MQ0=0;QD=14.82;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1219,132,0
chrXV	43176	.	A	C	1252	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=15.46;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1285,138,0
chrXV	43183	.	A	G	1221	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.56;MQ0=0;QD=14.71;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1254,138,0
chrXV	43187	.	A	G	1140	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.288;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;MQRankSum=-1.599;QD=14.62;ReadPosRankSum=1.688;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1173,109,0
chrXV	43188	.	A	G	1154	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.26;MQ0=0;QD=14.42;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1187,132,0
chrXV	43223	.	G	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.96;MQ0=0;QD=18.13;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1719,183,0
chrXV	43312	.	G	A	1547	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=4.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;MQRankSum=-1.390;QD=19.10;ReadPosRankSum=1.518;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1580,189,0
chrXV	43313	.	A	G	1524	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=4.314;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.05;MQ0=0;MQRankSum=-0.920;QD=18.81;ReadPosRankSum=1.518;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1557,186,0
chrXV	43318	.	A	G	1495	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;QD=20.76;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1528,174,0
chrXV	43337	.	C	T	671	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.06;MQ0=0;QD=12.66;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:81:704,81,0
chrXV	43351	.	C	T	288	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.84;MQ0=0;QD=9.00;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:39:321,39,0
chrXV	43360	.	A	G	226	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.74;MQ0=0;QD=6.65;SB=-1.560e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:30:259,30,0
chrXV	43366	.	A	G	220	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.96;MQ0=0;QD=6.67;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:30:253,30,0
chrXV	43374	.	A	G	285	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=8.38;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:39:318,39,0
chrXV	43376	.	T	C	290	SnpCluster	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.42;MQ0=0;QD=8.53;SB=-1.670e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:39:323,39,0
chrXV	43415	.	A	G	637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.928;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.51;MQ0=0;MQRankSum=-0.990;QD=15.17;ReadPosRankSum=1.568;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:75:670,75,0
chrXV	43444	.	T	C	767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;MQRankSum=1.417;QD=17.43;ReadPosRankSum=1.654;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:87:800,87,0
chrXV	43479	.	A	T	1088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=3.625;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;MQRankSum=-0.163;QD=20.15;ReadPosRankSum=1.667;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1121,120,0
chrXV	43511	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.493;HaplotypeScore=4.2991;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=1.595;QD=19.27;ReadPosRankSum=1.687;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1517,168,0
chrXV	43599	.	C	T	1016	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=16.13;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1049,114,0
chrXV	43623	.	T	C	701	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.17;MQ0=0;QD=14.31;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:84:734,84,0
chrXV	43625	.	T	C	708	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=15.06;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:741,84,0
chrXV	43626	.	C	T	711	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=15.13;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:744,84,0
chrXV	43628	.	C	G	695	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.88;MQ0=0;QD=14.79;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:728,84,0
chrXV	43648	.	G	A	314	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;QD=9.24;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:42:347,42,0
chrXV	43650	.	A	T	324	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.97;MQ0=0;QD=9.53;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:42:357,42,0
chrXV	43663	.	A	G	392	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.28;MQ0=0;QD=9.56;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:54:425,54,0
chrXV	43666	.	C	A	375	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;QD=8.72;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:51:408,51,0
chrXV	43688	.	G	T	377	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=0;QD=8.02;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:48:410,48,0
chrXV	43705	.	C	T	532	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.71;MQ0=0;QD=10.04;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:66:565,66,0
chrXV	43753	.	G	A	823	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=13.49;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:93:856,93,0
chrXV	43786	.	C	T	821	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=17.10;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:93:854,93,0
chrXV	43834	.	C	T	476	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=13.60;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:54:509,54,0
chrXV	43840	.	A	C	486	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=16.20;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:57:519,57,0
chrXV	43853	.	G	A	464	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=15.47;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:54:497,54,0
chrXV	43873	.	G	A	550	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=15.28;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:63:583,63,0
chrXV	43915	.	T	G	999	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=17.84;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1032,114,0
chrXV	44065	.	C	G	892	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=18.98;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:925,102,0
chrXV	44092	.	T	C	593	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.36;MQ0=0;QD=16.94;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:69:626,69,0
chrXV	44113	.	G	A	670	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.67;MQ0=0;QD=17.18;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:75:703,75,0
chrXV	44149	.	T	A	920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.347;QD=23.00;ReadPosRankSum=1.646;SB=-2.570e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:99:953,102,0
chrXV	44176	.	A	G	898	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=20.41;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:931,102,0
chrXV	44181	.	A	G	896	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.33;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:929,99,0
chrXV	44249	.	T	G	926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.345;DP=48;Dels=0.00;FS=2.864;HaplotypeScore=9.0223;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=0.237;QD=19.29;ReadPosRankSum=2.345;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:2,45:48:99:959,108,0
chrXV	44385	.	A	G	1095	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.55;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1128,120,0
chrXV	44491	.	G	A	666	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=22.20;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:75:699,75,0
chrXV	44548	.	T	C	709	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.26;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:742,81,0
chrXV	44724	.	C	T	816	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.36;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,45:47:90:849,90,0
chrXV	44787	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.48;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2029,222,0
chrXV	44801	.	C	T	2102	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=24.44;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2135,225,0
chrXV	44819	.	A	G	2148	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=12.086;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.125;QD=21.92;ReadPosRankSum=1.696;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:1,96:98:99:2181,246,0
chrXV	45210	.	A	G	1920	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.00;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1953,219,0
chrXV	45492	.	G	A	865	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.02;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,48:48:96:898,96,0
chrXV	46091	.	G	A	1006	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=22.86;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1039,108,0
chrXV	46201	.	T	A	1801	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=20.94;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1834,195,0
chrXV	46204	.	C	T	1633	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.41;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1666,177,0
chrXV	46508	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=15.28;SB=-1.107e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1576,162,0
chrXV	46512	.	T	C	1572	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=15.56;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1605,180,0
chrXV	46903	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.03;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1955,222,0
chrXV	46963	.	G	A	2434	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.54;SB=-1.376e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2467,255,0
chrXV	47272	.	C	T	1769	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.11;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1802,192,0
chrXV	47332	.	T	C	1730	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.70;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1763,189,0
chrXV	47652	.	A	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.46;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1415,156,0
chrXV	47662	.	G	T	1403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.380;DP=71;Dels=0.00;FS=2.983;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;MQRankSum=0.335;QD=19.76;ReadPosRankSum=1.675;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1436,150,0
chrXV	47740	.	G	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.41;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1586,168,0
chrXV	47758	.	A	G	1624	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.25;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1657,180,0
chrXV	47785	.	C	T	1992	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=18.28;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2025,216,0
chrXV	47793	.	A	G	1806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;MQRankSum=0.186;QD=16.12;ReadPosRankSum=1.701;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:1839,204,0
chrXV	48065	.	T	A	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-0.928;QD=21.89;ReadPosRankSum=1.670;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1259,132,0
chrXV	48109	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.29;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1656,177,0
chrXV	48344	.	A	G	1774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-0.551;QD=20.16;ReadPosRankSum=1.693;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1807,201,0
chrXV	48688	.	G	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.28;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1303,141,0
chrXV	48997	.	G	A	985	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=12.5706;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=16.98;SB=-5.001e+01	GT:AD:DP:GQ:PL	1/1:0,43:58:99:1018,108,0
chrXV	49109	.	G	C	1714	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.70;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1747,192,0
chrXV	49259	.	C	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.51;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1603,165,0
chrXV	49316	.	C	T	1164	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=19.40;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1197,126,0
chrXV	49373	.	A	G	1529	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.39;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1562,171,0
chrXV	49403	.	T	G	2390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=4.001;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.050;QD=23.20;ReadPosRankSum=1.698;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2423,264,0
chrXV	49477	.	A	G	3872.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;DP=159;Dels=0.00;FS=10.423;HaplotypeScore=8.0313;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.361;QD=24.35;ReadPosRankSum=2.855;SB=-1.775e+03	GT:AD:DP:GQ:PL	1/1:3,156:159:99:3872,432,0
chrXV	50002	.	C	T	591	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=13.74;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:66:624,66,0
chrXV	50010	.	A	T	507	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-1.646;QD=12.67;ReadPosRankSum=1.559;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:57:540,57,0
chrXV	50012	.	C	T	539	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=13.82;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:60:572,60,0
chrXV	50220	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2980;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=16.74;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1389,156,0
chrXV	50224	.	T	C	1396	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.90;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1429,153,0
chrXV	50257	.	T	C	1728	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.60;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1761,186,0
chrXV	50638	.	A	G	1337	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.66;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1370,147,0
chrXV	50721	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.49;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1233,129,0
chrXV	50942	.	C	G	1566	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.34;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1599,174,0
chrXV	51031	.	T	C	1826	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1859,204,0
chrXV	51148	.	T	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.88;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1980,216,0
chrXV	51298	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7448;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.83;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1470,153,0
chrXV	51466	.	A	G	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0575;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=0.422;QD=23.62;ReadPosRankSum=1.648;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1970,213,0
chrXV	51697	.	A	G	1505	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=19.29;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1538,168,0
chrXV	51718	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.593;QD=19.13;ReadPosRankSum=1.687;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1506,171,0
chrXV	52021	.	A	G	868	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=15.23;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:901,99,0
chrXV	52036	.	A	G	733	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=13.83;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:87:766,87,0
chrXV	52057	.	G	A	780	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1357;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=13.45;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:87:813,87,0
chrXV	52306	.	G	A	984	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=23.43;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1017,108,0
chrXV	52333	.	A	G	1099	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=22.43;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1132,123,0
chrXV	52372	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.318;QD=20.04;ReadPosRankSum=1.662;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:1035,114,0
chrXV	52465	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.7650;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=18.92;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1225,132,0
chrXV	52540	.	C	T	619	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.87;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:652,72,0
chrXV	52864	.	A	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.52;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1776,192,0
chrXV	53014	.	C	T	2297	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.44;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2330,252,0
chrXV	53115	.	A	G	2097	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.3931;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=24.10;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2130,228,0
chrXV	53253	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=18.51;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1717,183,0
chrXV	53263	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.50;MQ0=0;QD=18.28;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1605,174,0
chrXV	53283	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.83;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1531,168,0
chrXV	53357	.	G	C	2052	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3158;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.80;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2085,231,0
chrXV	53391	.	A	G	2396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=110;Dels=0.00;FS=2.602;HaplotypeScore=11.3224;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.732;QD=21.78;ReadPosRankSum=2.936;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:3,106:110:99:2429,244,0
chrXV	53508	.	G	A	1900	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.36;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1933,201,0
chrXV	53707	.	A	G	1358	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.388;QD=20.27;ReadPosRankSum=1.681;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1391,153,0
chrXV	53718	.	T	C	1309	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.1169;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.70;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1342,150,0
chrXV	53742	.	G	A	1876	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.32;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1909,198,0
chrXV	53781	.	C	T	2473	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=21.69;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2506,273,0
chrXV	53853	.	C	T	2858	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=23.43;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2891,306,0
chrXV	54318	.	T	C	811	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=14.23;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:93:844,93,0
chrXV	54321	.	A	G	719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.870;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=-1.322;QD=12.84;ReadPosRankSum=2.870;SB=-1.080e+02	GT:AD:DP:GQ:PL	1/1:3,51:56:81:752,81,0
chrXV	54339	.	T	C	638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=6.585;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;MQRankSum=-0.211;QD=15.56;ReadPosRankSum=1.648;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:72:671,72,0
chrXV	54757	.	T	C	961	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=20.45;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:994,108,0
chrXV	55311	.	C	T	868	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=15.50;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:901,96,0
chrXV	55330	.	T	C	1315	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.900;DP=71;Dels=0.00;FS=5.825;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.580;QD=18.52;ReadPosRankSum=2.871;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:3,67:71:99:1348,144,0
chrXV	56070	.	C	T	1809	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8341;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.33;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1842,192,0
chrXV	56211	.	C	A	1495	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.67;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1528,162,0
chrXV	56311	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.32;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1627,180,0
chrXV	56322	.	T	C	1655	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=93;Dels=0.02;FS=0.000;HaplotypeScore=10.4538;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-1.654;QD=17.80;ReadPosRankSum=1.654;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,88:91:99:1688,189,0
chrXV	56429	.	C	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=10.4114;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=21.20;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1835,195,0
chrXV	56450	.	C	T	1523	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=6.4897;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.53;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1556,165,0
chrXV	56600	.	G	C	2260	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.00;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2293,249,0
chrXV	56604	.	G	A	2312	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.27;SB=-1.460e+03	GT:AD:DP:GQ:PL	1/1:0,118:120:99:2345,249,0
chrXV	56640	.	G	A	2816	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=18.53;SB=-1.570e+03	GT:AD:DP:GQ:PL	1/1:0,152:152:99:2849,309,0
chrXV	56987	.	A	G	1914	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8818;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;MQRankSum=1.024;QD=21.75;ReadPosRankSum=1.693;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1947,213,0
chrXV	57010	.	A	T	1827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=1.573;QD=21.00;ReadPosRankSum=1.692;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1860,195,0
chrXV	57174	.	A	G	2018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.608;QD=24.02;ReadPosRankSum=1.691;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:2051,228,0
chrXV	57309	.	T	C	1924	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=11.2310;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.11;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1957,219,0
chrXV	57448	.	C	T	1119	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.72;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1152,123,0
chrXV	57609	.	C	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.63;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1504,162,0
chrXV	57629	.	T	C	1524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.637;HaplotypeScore=2.7468;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-0.595;QD=22.75;ReadPosRankSum=1.629;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1557,171,0
chrXV	57711	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.81;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1638,171,0
chrXV	57712	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.61;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1522,168,0
chrXV	57800	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.87;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1680,177,0
chrXV	57877	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;DP=83;Dels=0.00;FS=2.465;HaplotypeScore=2.4495;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.433;QD=18.84;ReadPosRankSum=2.692;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:3,79:83:99:1597,174,0
chrXV	57992	.	C	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.79;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1175,123,0
chrXV	58067	.	T	C	1600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.733;DP=72;Dels=0.00;FS=6.166;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;MQRankSum=-1.184;QD=22.22;ReadPosRankSum=2.846;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:3,69:72:99:1633,177,0
chrXV	58160	.	C	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=8.6659;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=18.75;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1383,153,0
chrXV	58361	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.85;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1464,156,0
chrXV	58608	.	T	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.53;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1498,165,0
chrXV	58673	.	A	G	1610	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.68;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1643,183,0
chrXV	58899	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.30;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1757,186,0
chrXV	58998	.	T	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.04;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1590,168,0
chrXV	59008	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.029;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.025;QD=19.30;ReadPosRankSum=0.075;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1365,144,0
chrXV	59307	.	C	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.8762;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=15.99;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1360,150,0
chrXV	59467	.	G	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.44;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1316,138,0
chrXV	59544	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.48;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1180,129,0
chrXV	59664	.	C	T	1508	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=22.18;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1541,162,0
chrXV	59737	.	G	A	1303	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=19.16;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1336,141,0
chrXV	59847	.	G	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=21.09;SB=-2.690e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1425,159,0
chrXV	60030	.	A	G	853	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=14.46;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:96:886,96,0
chrXV	60045	.	T	A	729	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.817;DP=53;Dels=0.00;FS=8.792;HaplotypeScore=2.8149;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;MQRankSum=1.340;QD=13.75;ReadPosRankSum=1.667;SB=-1.510e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:81:762,81,0
chrXV	60310	.	T	C	473	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.19;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:57:506,57,0
chrXV	61409	.	A	G	1968	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.50;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2001,219,0
chrXV	61694	.	A	G	2294	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.85;SB=-1.345e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2327,261,0
chrXV	61748	.	C	T	2417	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=20.66;SB=-1.542e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2450,258,0
chrXV	61766	.	T	C	2340	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.17;SB=-1.515e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2373,264,0
chrXV	61901	.	G	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.29;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1859,207,0
chrXV	62039	.	G	A	2366	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=23.20;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2399,252,0
chrXV	62062	.	G	A	2486	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.45;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2519,264,0
chrXV	62108	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8200;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;MQRankSum=-0.722;QD=17.15;ReadPosRankSum=1.696;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1697,186,0
chrXV	62432	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=19.48;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1494,159,0
chrXV	62744	.	G	A	2092	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.49;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2125,222,0
chrXV	62866	.	C	A	1150	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.47;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1183,123,0
chrXV	62922	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=18.86;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1146,126,0
chrXV	63524	.	C	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.9766;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.37;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1486,156,0
chrXV	63707	.	G	A	991	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.65;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1024,108,0
chrXV	63712	.	C	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.40;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1042,108,0
chrXV	65559	.	G	A	3089	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.52;SB=-1.686e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3122,324,0
chrXV	65716	.	A	G	1459	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.369;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=1.127;QD=23.16;ReadPosRankSum=1.677;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1492,168,0
chrXV	65800	.	G	A	1919	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.58;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1952,207,0
chrXV	65818	.	A	G	1977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;MQRankSum=1.371;QD=20.59;ReadPosRankSum=1.624;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2010,228,0
chrXV	66022	.	A	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.29;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1672,177,0
chrXV	66373	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.32;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1173,132,0
chrXV	66418	.	T	C	985	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=18.24;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1018,111,0
chrXV	66421	.	G	A	831	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=15.68;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:864,99,0
chrXV	66814	.	C	G	2236	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;QD=21.71;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2269,252,0
chrXV	67090	.	A	T	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;MQRankSum=0.269;QD=18.75;ReadPosRankSum=1.694;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1758,195,0
chrXV	67130	.	C	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=16.89;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1519,165,0
chrXV	67143	.	T	G	1299	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.77;MQ0=0;QD=15.84;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1332,150,0
chrXV	67145	.	G	A	1316	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=30.18;MQ0=0;MQRankSum=-1.732;QD=16.66;ReadPosRankSum=1.206;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1349,141,0
chrXV	67147	.	A	G	1249	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=30.18;MQ0=0;QD=15.81;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1282,138,0
chrXV	67149	.	C	T	1279	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=16.40;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1312,138,0
chrXV	67175	.	C	G	1316	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=13.29;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1349,153,0
chrXV	67209	.	G	A	1655	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=15.91;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1688,177,0
chrXV	67210	.	G	A	1654	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=15.90;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1687,177,0
chrXV	67223	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=15.47;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:1750,189,0
chrXV	67274	.	C	T	2397	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=21.21;SB=-1.538e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2430,252,0
chrXV	67367	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.30;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1641,180,0
chrXV	67526	.	T	C	1131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=67;Dels=0.00;FS=4.445;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;MQRankSum=-1.029;QD=16.88;ReadPosRankSum=1.678;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,63:67:99:1164,132,0
chrXV	67535	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=17.90;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1232,135,0
chrXV	67774	.	G	A	1221	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=22.61;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1254,132,0
chrXV	67780	.	T	C	1076	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;MQRankSum=-0.733;QD=20.30;ReadPosRankSum=1.599;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1109,126,0
chrXV	67831	.	A	G	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=53;Dels=0.00;FS=4.202;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.663;QD=16.25;ReadPosRankSum=1.525;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:1,49:53:99:894,102,0
chrXV	68383	.	C	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.43;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1760,186,0
chrXV	69357	.	A	G	1009	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.2491;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.69;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1042,114,0
chrXV	69484	.	C	G	1042	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.61;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1075,120,0
chrXV	70221	.	T	A	1755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.8678;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.363;QD=22.79;ReadPosRankSum=1.686;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1788,189,0
chrXV	70322	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=4.337;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.334;QD=21.10;ReadPosRankSum=1.611;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1257,144,0
chrXV	71245	.	A	G	1935	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=15.2283;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.99;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,82:88:99:1968,216,0
chrXV	71578	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.98;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1544,162,0
chrXV	71623	.	C	T	1590	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.38;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1623,174,0
chrXV	71725	.	G	A	2219	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.64;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2252,237,0
chrXV	71821	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.82;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1581,168,0
chrXV	72741	.	A	C	1985	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.90;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,103:105:99:2018,225,0
chrXV	72906	.	G	C	690	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:723,81,0
chrXV	73138	.	C	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=22.31;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1952,213,0
chrXV	73327	.	T	C	884	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=4.559;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.346;QD=14.73;ReadPosRankSum=1.559;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:917,105,0
chrXV	73503	.	T	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=23.34;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1620,171,0
chrXV	73514	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.25;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1457,153,0
chrXV	74126	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.57;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1824,192,0
chrXV	74338	.	G	T	3628.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=23.41;SB=-1.675e+03	GT:AD:DP:GQ:PL	1/1:0,153:155:99:3628,396,0
chrXV	74588	.	T	G	1433	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=5.971;HaplotypeScore=8.8260;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=-1.135;QD=16.28;ReadPosRankSum=1.692;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1466,162,0
chrXV	74693	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.62;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,109:111:99:1656,174,0
chrXV	74698	.	G	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=13.69;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1498,159,0
chrXV	74792	.	T	C	1742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.01;FS=3.612;HaplotypeScore=8.6217;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-1.284;QD=20.02;ReadPosRankSum=1.691;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1775,192,0
chrXV	74821	.	T	C	1237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.4936;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;MQRankSum=0.073;QD=17.18;ReadPosRankSum=1.391;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1270,144,0
chrXV	74828	.	A	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.53;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1330,144,0
chrXV	74966	.	T	C	1437	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=22.11;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1470,162,0
chrXV	75017	.	T	G	1231	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.54;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1264,141,0
chrXV	75116	.	T	C	1587	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=4.006;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=0.605;QD=19.12;ReadPosRankSum=1.690;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1620,183,0
chrXV	75126	.	T	C	1603	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=4.243;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.876;QD=18.86;ReadPosRankSum=1.691;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1636,180,0
chrXV	75161	.	T	C	1338	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=4.102;HaplotypeScore=9.6671;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=0.818;QD=18.33;ReadPosRankSum=1.684;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1371,150,0
chrXV	75239	.	A	G	1132	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=16.41;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1165,129,0
chrXV	75243	.	T	C	1131	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.445;QD=16.16;ReadPosRankSum=1.683;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1164,126,0
chrXV	75245	.	G	A	1051	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.396;DP=70;Dels=0.00;FS=3.979;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=50.64;MQ0=0;MQRankSum=0.099;QD=15.01;ReadPosRankSum=-1.584;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:98:1084,98,0
chrXV	75413	.	A	C	1270	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.16;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1303,141,0
chrXV	75473	.	C	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=21.24;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1477,162,0
chrXV	75605	.	G	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=21.83;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1343,141,0
chrXV	75686	.	T	C	1856	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8226;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=24.10;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1889,204,0
chrXV	75941	.	G	A	1704	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.32;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1737,183,0
chrXV	75953	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=18.43;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1563,168,0
chrXV	75968	.	C	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=18.94;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1851,198,0
chrXV	76001	.	C	T	1955	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.6909;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=18.80;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1988,207,0
chrXV	76115	.	T	A	1296	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.00;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1329,141,0
chrXV	76139	.	A	G	1229	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.82;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1262,138,0
chrXV	76208	.	A	C	1495	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.7427;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=18.92;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1528,168,0
chrXV	76379	.	G	A	1156	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=49.27;MQ0=0;QD=18.06;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1189,126,0
chrXV	76391	.	T	C	936	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=13.18;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:969,105,0
chrXV	76416	.	A	G	945	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=13.12;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:978,105,0
chrXV	76655	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.357;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;MQRankSum=0.115;QD=19.47;ReadPosRankSum=1.675;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1201,135,0
chrXV	76693	.	A	C	565	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.837;DP=43;Dels=0.00;FS=11.797;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.13;MQ0=0;MQRankSum=-2.837;QD=13.14;ReadPosRankSum=2.837;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:3,40:43:66:598,66,0
chrXV	76700	.	G	A	549	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.17;MQ0=0;QD=13.72;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:63:582,63,0
chrXV	76703	.	G	A	505	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=14.03;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:57:538,57,0
chrXV	76704	.	G	C	510	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=0;QD=14.17;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:60:543,60,0
chrXV	76707	.	A	G	548	SnpCluster	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.09;MQ0=0;QD=12.74;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:63:581,63,0
chrXV	76718	.	C	T	586	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=13.02;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:66:619,66,0
chrXV	76776	.	T	C	551	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=14.13;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:63:584,63,0
chrXV	77073	.	C	G	1858	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.8466;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=24.13;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1891,210,0
chrXV	77199	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.78;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1400,156,0
chrXV	77289	.	T	C	2615	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.92;SB=-1.516e+03	GT:AD:DP:GQ:PL	1/1:0,123:125:99:2648,297,0
chrXV	77324	.	A	C	2887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;MQRankSum=-1.533;QD=20.77;ReadPosRankSum=1.134;SB=-1.608e+03	GT:AD:DP:GQ:PL	1/1:1,138:139:99:2920,318,0
chrXV	77377	.	A	G	1931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=4.296;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=42.94;MQ0=0;MQRankSum=-0.501;QD=15.96;ReadPosRankSum=1.703;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:1964,222,0
chrXV	77399	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.487;DP=99;Dels=0.00;FS=3.235;HaplotypeScore=1.9566;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;MQRankSum=-0.437;QD=12.79;ReadPosRankSum=1.312;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:1299,141,0
chrXV	77404	.	G	A	1305	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.63;MQ0=0;QD=14.34;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1338,141,0
chrXV	77432	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.24;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1447,153,0
chrXV	77513	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.6826;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.66;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1679,180,0
chrXV	77555	.	T	C	1846	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.22;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1879,207,0
chrXV	77919	.	T	C	1874	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.54;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1907,210,0
chrXV	78123	.	G	C	2516	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.88;SB=-1.376e+03	GT:AD:DP:GQ:PL	1/1:0,112:115:99:2549,285,0
chrXV	78176	.	A	G	3105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.2568;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=1.208;QD=20.16;ReadPosRankSum=1.709;SB=-1.553e+03	GT:AD:DP:GQ:PL	1/1:2,151:154:99:3138,348,0
chrXV	78272	.	T	G	1732	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=22.79;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1765,192,0
chrXV	78367	.	C	T	1020	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.4952;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.17;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,43:46:99:1053,117,0
chrXV	78663	.	T	G	1424	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1457,159,0
chrXV	78910	.	C	T	1332	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=21.84;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1365,147,0
chrXV	79026	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.94;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1409,147,0
chrXV	79132	.	G	A	2822	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.7914;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.76;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2855,303,0
chrXV	79159	.	G	A	2726	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.7316;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.91;SB=-1.166e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2759,285,0
chrXV	79199	.	C	T	2526	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.35;SB=-1.503e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2559,270,0
chrXV	79278	.	G	A	1052	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=12.23;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1085,114,0
chrXV	79286	.	A	G	882	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=39.68;MQ0=0;QD=10.76;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:915,99,0
chrXV	79297	.	C	G	744	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=38.93;MQ0=0;QD=9.19;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:87:777,87,0
chrXV	79304	.	A	T	513	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=8.02;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:60:546,60,0
chrXV	79305	.	T	A	495	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=7.62;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:60:528,60,0
chrXV	79585	.	C	T	1982	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.4761;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=20.65;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2015,216,0
chrXV	79627	.	G	A	1921	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=0;QD=22.60;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1954,204,0
chrXV	79906	.	C	T	1728	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.33;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1761,186,0
chrXV	79930	.	C	T	1133	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.43;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1166,132,0
chrXV	79941	.	T	G	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;MQRankSum=0.000;QD=18.13;ReadPosRankSum=1.621;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1157,126,0
chrXV	79976	.	T	C	728	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=42.60;MQ0=0;QD=14.27;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:84:761,84,0
chrXV	79987	.	T	C	552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=3.233;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.03;MQ0=0;MQRankSum=-1.213;QD=13.46;ReadPosRankSum=1.646;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:63:585,63,0
chrXV	80004	.	C	G	691	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;QD=16.07;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:78:724,78,0
chrXV	80008	.	A	G	681	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.81;MQ0=0;QD=15.13;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:81:714,81,0
chrXV	80033	.	A	G	959	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;QD=18.80;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:992,108,0
chrXV	80118	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=21.89;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1215,129,0
chrXV	80394	.	A	T	1588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.710;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=1.293;QD=22.06;ReadPosRankSum=1.683;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1621,171,0
chrXV	80409	.	G	A	1436	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=20.81;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1469,153,0
chrXV	80423	.	G	C	1071	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=17.56;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1104,123,0
chrXV	80449	.	C	T	752	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.72;MQ0=0;QD=13.43;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:84:785,84,0
chrXV	80451	.	A	G	634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=4.536;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;MQRankSum=-0.962;QD=11.53;ReadPosRankSum=1.668;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:75:667,75,0
chrXV	80586	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=4.702;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=1.006;QD=20.44;ReadPosRankSum=1.676;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1321,144,0
chrXV	80641	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.01;FS=6.672;HaplotypeScore=14.9535;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.294;QD=20.01;ReadPosRankSum=1.644;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1634,183,0
chrXV	80664	.	C	T	2355	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=21.61;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2388,246,0
chrXV	80741	.	G	A	3223.06	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=10.2851;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=23.02;SB=-1.674e+03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:3256,345,0
chrXV	80920	.	T	C	821	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=20.52;SB=-2.660e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:854,93,0
chrXV	81255	.	C	A	1550	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.2549;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=23.48;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1583,174,0
chrXV	81343	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;QD=21.63;SB=-6.101e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1136,120,0
chrXV	81355	.	T	C	721	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.97;MQ0=0;QD=18.97;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:81:754,81,0
chrXV	81364	.	G	T	609	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.66;MQ0=0;QD=18.45;SB=-9.301e+01	GT:AD:DP:GQ:PL	1/1:0,33:33:69:642,69,0
chrXV	81384	.	A	G	315	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=21.2632;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=11.67;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:39:348,39,0
chrXV	81404	.	T	C	335	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=12.88;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:39:368,39,0
chrXV	81409	.	T	G	319	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=11.81;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:39:352,39,0
chrXV	81416	.	G	A	284	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=10.92;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:33:317,33,0
chrXV	81434	.	A	T	255	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=8.23;SB=-2.902e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:30:288,30,0
chrXV	81436	.	C	T	247	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.19;MQ0=0;QD=7.72;SB=-2.802e+01	GT:AD:DP:GQ:PL	1/1:0,32:32:30:280,30,0
chrXV	81481	.	C	T	558	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.18;MQ0=0;QD=13.61;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:63:591,63,0
chrXV	81486	.	G	A	660	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=14.04;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:75:693,75,0
chrXV	81508	.	A	T	980	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.33;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1013,105,0
chrXV	81543	.	G	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.55;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1558,162,0
chrXV	81669	.	T	A	2433	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.8367;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.78;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2466,255,0
chrXV	81703	.	T	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=19.57;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1853,198,0
chrXV	81796	.	T	A	2209	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.2091;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=22.77;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2242,237,0
chrXV	81934	.	T	C	1852	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.71;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1885,210,0
chrXV	81988	.	T	C	2189	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=18.09;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2222,246,0
chrXV	82066	.	A	G	1715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=88;Dels=0.00;FS=3.003;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=1.302;QD=19.49;ReadPosRankSum=2.366;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1748,195,0
chrXV	82183	.	T	C	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=102;Dels=0.00;FS=5.035;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=1.087;QD=18.26;ReadPosRankSum=1.698;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1896,204,0
chrXV	82213	.	A	G	1849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;DP=103;Dels=0.00;FS=3.043;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.872;QD=17.95;ReadPosRankSum=2.402;SB=-1.315e+03	GT:AD:DP:GQ:PL	1/1:2,101:103:99:1882,207,0
chrXV	82279	.	C	T	1661	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.45;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1694,180,0
chrXV	82378	.	G	A	1044	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.69;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1077,114,0
chrXV	82666	.	T	C	2494	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3968;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.27;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2527,273,0
chrXV	82698	.	T	G	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.226;DP=68;Dels=0.00;FS=49.712;HaplotypeScore=6.8288;MLEAC=1;MLEAF=0.500;MQ=57.23;MQ0=0;MQRankSum=0.817;QD=0.54;ReadPosRankSum=0.053;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,23:68:67:67,0,697
chrXV	82759	.	A	G	1568	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.607;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-1.466;QD=20.10;ReadPosRankSum=1.643;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1601,174,0
chrXV	82762	.	C	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=19.13;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1468,165,0
chrXV	82988	.	C	T	3030	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.28;SB=-1.481e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3063,321,0
chrXV	83069	.	T	C	2805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=4.604;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.559;QD=21.74;ReadPosRankSum=1.705;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:1,126:129:99:2838,309,0
chrXV	83321	.	G	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=21.79;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1362,147,0
chrXV	83322	.	G	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=22.30;SB=-2.380e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1438,150,0
chrXV	83622	.	T	C	504	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=19.38;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:60:537,60,0
chrXV	83646	.	T	A	449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.793;DP=34;Dels=0.00;FS=2.606;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;MQRankSum=-1.518;QD=13.21;ReadPosRankSum=2.793;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:3,31:34:51:482,51,0
chrXV	83647	.	T	C	395	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=11.62;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:48:428,48,0
chrXV	83714	.	A	C	757	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=15.77;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:790,87,0
chrXV	83725	.	G	A	631	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=14.34;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:75:664,75,0
chrXV	84190	.	A	G	2456	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.73;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2489,273,0
chrXV	84226	.	G	A	2464	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=23.69;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2497,264,0
chrXV	84304	.	A	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.23;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1434,153,0
chrXV	84457	.	C	T	888	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=19.73;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:921,102,0
chrXV	84463	.	C	T	847	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=18.41;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:880,96,0
chrXV	84628	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.99;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1792,192,0
chrXV	84742	.	G	A	1691	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.62;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1724,192,0
chrXV	85000	.	C	T	2148	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.85;SB=-1.337e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2181,228,0
chrXV	85011	.	G	C	2109	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8298;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=19.53;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,105:108:99:2142,234,0
chrXV	85161	.	T	C	2212	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=24.04;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2245,246,0
chrXV	85524	.	A	G	1619	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=5.378;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.025;QD=23.13;ReadPosRankSum=1.582;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1652,180,0
chrXV	85645	.	A	G	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.083;QD=22.91;ReadPosRankSum=1.689;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1866,207,0
chrXV	85807	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=17.52;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1627,177,0
chrXV	85809	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=16.28;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1547,171,0
chrXV	85960	.	G	A	1505	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.81;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1538,159,0
chrXV	86056	.	C	A	522	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.40;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:60:555,60,0
chrXV	86509	.	A	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.44;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1423,153,0
chrXV	90174	.	A	C	976	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=13.94;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1009,108,0
chrXV	96853	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=6.570;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;MQRankSum=0.517;QD=17.34;ReadPosRankSum=2.350;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1316,147,0
chrXV	96908	.	A	T	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=57;Dels=0.00;FS=7.466;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.523;QD=16.42;ReadPosRankSum=2.362;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:969,105,0
chrXV	96983	.	T	A	1729	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.68;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1762,186,0
chrXV	97189	.	T	C	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.183;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;MQRankSum=-1.057;QD=19.32;ReadPosRankSum=1.642;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1521,171,0
chrXV	97199	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.71;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1610,174,0
chrXV	97610	.	G	C	2141	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.59;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2174,237,0
chrXV	97754	.	A	G	1323	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.75;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1356,150,0
chrXV	97910	.	A	G	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.075;QD=23.41;ReadPosRankSum=1.682;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1648,183,0
chrXV	99714	.	G	A	1658	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.98;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1691,183,0
chrXV	100319	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.094;DP=84;Dels=0.00;FS=2.836;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;MQRankSum=-0.163;QD=17.88;ReadPosRankSum=2.361;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:2,81:84:99:1535,168,0
chrXV	100603	.	A	G	1952	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5292;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.45;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1985,222,0
chrXV	100705	.	C	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=16.50;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1452,153,0
chrXV	100717	.	T	C	1521	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.054;DP=94;Dels=0.00;FS=6.163;HaplotypeScore=9.1393;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=0.710;QD=16.18;ReadPosRankSum=2.904;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:3,91:94:99:1554,171,0
chrXV	101400	.	A	G	2416	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.98;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2449,264,0
chrXV	101577	.	C	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=26.56;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1680,174,0
chrXV	102500	.	T	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.42;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1532,171,0
chrXV	102671	.	A	T	957	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.3359;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.80;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:990,105,0
chrXV	102989	.	C	T	2172	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.61;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2205,234,0
chrXV	103079	.	T	C	1631	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.65;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1664,186,0
chrXV	103255	.	C	T	3000	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-1.497e+03	GT:AD:DP:GQ:PL	1/1:0,143:144:99:3033,330,0
chrXV	103578	.	C	T	1436	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=19.41;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1469,156,0
chrXV	103717	.	A	G	1826	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;MQRankSum=-0.480;QD=22.00;ReadPosRankSum=1.690;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1859,204,0
chrXV	103869	.	A	G	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=4.840;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-0.541;QD=24.03;ReadPosRankSum=1.678;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1571,168,0
chrXV	103968	.	A	C	1682	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.84;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1715,189,0
chrXV	104098	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=16.80;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1411,153,0
chrXV	104119	.	A	G	1652	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=19.21;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1685,189,0
chrXV	104197	.	A	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.67;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1459,153,0
chrXV	104229	.	G	A	1231	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.6740;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=20.18;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1264,135,0
chrXV	104628	.	A	G	1020	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1053,117,0
chrXV	104808	.	G	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.48;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1292,141,0
chrXV	105108	.	T	C	1313	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.5035;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.64;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1346,150,0
chrXV	105232	.	T	G	1499	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.51;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1532,168,0
chrXV	105242	.	G	A	1615	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=18.78;SB=-9.530e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1648,177,0
chrXV	106156	.	C	G	1829	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.86;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1862,204,0
chrXV	106251	.	A	G	1960	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.30;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1993,219,0
chrXV	107138	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.99;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1704,189,0
chrXV	107387	.	A	G	1934	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3793;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.80;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,89:93:99:1967,213,0
chrXV	107546	.	C	T	1995	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.04;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2028,213,0
chrXV	107690	.	A	G	1128	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.69;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1161,129,0
chrXV	107801	.	C	T	1320	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1353,141,0
chrXV	107862	.	G	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.62;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1289,141,0
chrXV	108303	.	C	A	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7988;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.274;QD=22.44;ReadPosRankSum=1.550;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1357,141,0
chrXV	108945	.	C	T	1352	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.33;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1385,144,0
chrXV	108950	.	T	A	1284	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=17.59;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1317,141,0
chrXV	108954	.	C	T	1236	SnpCluster	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.41;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1269,132,0
chrXV	109088	.	T	C	1583	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=3.413;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.022;QD=20.04;ReadPosRankSum=1.688;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1616,180,0
chrXV	109106	.	G	A	1913	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.26;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1946,204,0
chrXV	109424	.	C	T	707	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=13.86;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:81:740,81,0
chrXV	110189	.	C	T	2238	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.3096;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=24.59;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2271,237,0
chrXV	110803	.	A	C	67.51	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=4.82;SB=-5.053e-01	GT:AD:DP:GQ:PL	1/1:0,14:14:12:100,12,0
chrXV	110818	.	A	G	423	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=8.46;SB=-6.554e-03	GT:AD:DP:GQ:PL	1/1:0,50:50:54:456,54,0
chrXV	110842	.	A	G	415	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.218;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-1.204;QD=6.59;ReadPosRankSum=4.445;SB=3.00	GT:AD:DP:GQ:PL	1/1:11,52:63:54:448,54,0
chrXV	110847	.	G	A	420	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.803;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;MQRankSum=-2.733;QD=6.09;ReadPosRankSum=3.681;SB=3.00	GT:AD:DP:GQ:PL	1/1:11,57:69:54:453,54,0
chrXV	111259	.	A	T	2644	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.32;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2677,285,0
chrXV	111761	.	A	G	1922	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3706;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.12;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1955,216,0
chrXV	111851	.	C	T	2157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=8.6021;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.925;QD=20.94;ReadPosRankSum=-0.084;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2190,231,0
chrXV	112018	.	T	C	1371	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=77;Dels=0.00;FS=3.550;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=1.012;QD=17.81;ReadPosRankSum=1.687;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1404,153,0
chrXV	112087	.	T	C	2292	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=19.93;SB=-1.524e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2325,255,0
chrXV	112088	.	A	G	2226	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.70;SB=-1.467e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2259,252,0
chrXV	112116	.	G	A	2815	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.11;SB=-1.539e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2848,300,0
chrXV	113345	.	G	C	3076	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=6.2943;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.13;SB=-1.756e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3109,348,0
chrXV	113780	.	G	T	2179	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.95;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2212,246,0
chrXV	114813	.	G	A	2628	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.6356;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=22.08;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2661,282,0
chrXV	115050	.	G	A	228.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.571;DP=182;Dels=0.00;FS=4.289;HaplotypeScore=38.4474;MLEAC=1;MLEAF=0.500;MQ=42.51;MQ0=0;MQRankSum=-3.092;QD=1.25;ReadPosRankSum=-4.915;SB=-1.850e+02	GT:AD:DP:GQ:PL	0/1:132,49:182:99:258,0,1989
chrXV	115062	.	G	A	24.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=19.3026;MLEAC=1;MLEAF=0.500;MQ=41.66;MQ0=0;MQRankSum=-4.175;QD=0.13;ReadPosRankSum=-1.379;SB=-8.401e+01	GT:AD:DP:GQ:PL	0/1:149,29:178:54:54,0,2157
chrXV	115071	.	A	G	37.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;DP=171;Dels=0.00;FS=2.051;HaplotypeScore=55.1549;MLEAC=1;MLEAF=0.500;MQ=40.73;MQ0=0;MQRankSum=-4.656;QD=0.22;ReadPosRankSum=0.642;SB=-6.501e+01	GT:AD:DP:GQ:PL	0/1:148,23:171:67:67,0,2012
chrXV	115074	.	A	G	1113.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;DP=168;Dels=0.00;FS=3.991;HaplotypeScore=60.3330;MLEAC=1;MLEAF=0.500;MQ=40.31;MQ0=0;MQRankSum=-1.206;QD=6.63;ReadPosRankSum=1.026;SB=-6.320e+02	GT:AD:DP:GQ:PL	0/1:78,90:168:99:1143,0,923
chrXV	115083	.	A	G	147.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;DP=163;Dels=0.00;FS=0.850;HaplotypeScore=82.4975;MLEAC=1;MLEAF=0.500;MQ=39.97;MQ0=0;MQRankSum=-2.675;QD=0.90;ReadPosRankSum=3.096;SB=-9.601e+01	GT:AD:DP:GQ:PL	0/1:134,29:163:99:177,0,1728
chrXV	115086	.	A	G	831.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981;DP=158;Dels=0.00;FS=4.177;HaplotypeScore=103.5656;MLEAC=1;MLEAF=0.500;MQ=39.40;MQ0=0;MQRankSum=-4.037;QD=5.26;ReadPosRankSum=-2.394;SB=-5.230e+02	GT:AD:DP:GQ:PL	0/1:87,71:158:99:861,0,1064
chrXV	115092	.	G	A	1171.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;DP=149;Dels=0.00;FS=2.557;HaplotypeScore=121.4471;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=0;MQRankSum=-6.922;QD=7.86;ReadPosRankSum=0.240;SB=-6.080e+02	GT:AD:DP:GQ:PL	0/1:46,103:149:99:1201,0,581
chrXV	115095	.	A	G	127.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;DP=149;Dels=0.00;FS=0.868;HaplotypeScore=121.4703;MLEAC=1;MLEAF=0.500;MQ=38.52;MQ0=0;MQRankSum=-2.058;QD=0.85;ReadPosRankSum=2.367;SB=-1.140e+02	GT:AD:DP:GQ:PL	0/1:119,29:149:99:157,0,1470
chrXV	115098	.	A	G	348.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.379;DP=143;Dels=0.00;FS=7.950;HaplotypeScore=122.0215;MLEAC=1;MLEAF=0.500;MQ=38.87;MQ0=0;MQRankSum=-4.048;QD=2.43;ReadPosRankSum=-4.620;SB=-3.150e+02	GT:AD:DP:GQ:PL	0/1:100,43:143:99:378,0,1233
chrXV	115104	.	G	A	873.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;DP=128;Dels=0.00;FS=2.777;HaplotypeScore=110.2268;MLEAC=1;MLEAF=0.500;MQ=39.60;MQ0=0;MQRankSum=-5.864;QD=6.82;ReadPosRankSum=-4.191;SB=-3.630e+02	GT:AD:DP:GQ:PL	0/1:48,80:128:99:903,0,639
chrXV	115107	.	A	G	118.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=85.6908;MLEAC=1;MLEAF=0.500;MQ=39.60;MQ0=0;MQRankSum=-3.634;QD=0.92;ReadPosRankSum=-0.321;SB=-1.280e+02	GT:AD:DP:GQ:PL	0/1:94,34:128:99:148,0,1340
chrXV	115116	.	G	A	586.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=40.9098;MLEAC=1;MLEAF=0.500;MQ=40.67;MQ0=0;MQRankSum=-5.429;QD=5.28;ReadPosRankSum=-3.929;SB=-1.440e+02	GT:AD:DP:GQ:PL	0/1:53,58:111:99:616,0,740
chrXV	115119	.	A	G	301.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=23.2933;MLEAC=1;MLEAF=0.500;MQ=41.04;MQ0=0;MQRankSum=-4.146;QD=2.81;ReadPosRankSum=-4.375;SB=-1.580e+02	GT:AD:DP:GQ:PL	0/1:64,43:107:99:331,0,984
chrXV	115128	.	G	A	341.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;DP=75;Dels=0.00;FS=1.338;HaplotypeScore=25.7462;MLEAC=1;MLEAF=0.500;MQ=45.22;MQ0=0;MQRankSum=-5.000;QD=4.55;ReadPosRankSum=-3.105;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:47,28:75:99:371,0,771
chrXV	115164	.	A	G,T	307.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.490;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=6.6944;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.95;MQ0=0;MQRankSum=0.213;QD=13.95;ReadPosRankSum=1.575;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/2:4,11,7:22:99:367,131,101,236,0,218
chrXV	115336	.	G	T	2238	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.6343;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=19.81;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2271,246,0
chrXV	115370	.	C	T	2055	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.63;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2088,222,0
chrXV	115446	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.89;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1565,168,0
chrXV	116187	.	G	A	1006	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.15;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1039,111,0
chrXV	116289	.	C	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=23.73;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1101,114,0
chrXV	116340	.	A	T	1282	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.49;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1315,141,0
chrXV	116712	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=22.69;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1621,171,0
chrXV	116735	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.56;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1493,162,0
chrXV	117014	.	T	C	1688	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.9534;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.37;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1721,186,0
chrXV	117048	.	C	T	1504	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=20.60;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1537,162,0
chrXV	117221	.	A	G	1609	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.5201;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=22.35;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1642,180,0
chrXV	117367	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=22.63;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1368,147,0
chrXV	117703	.	T	A	17.84	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=14.8910;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;MQRankSum=0.638;QD=0.81;ReadPosRankSum=3.022;SB=1.24	GT:AD:DP:GQ:PL	1/1:18,4:22:6:49,6,0
chrXV	117992	.	T	A	48.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;DP=171;Dels=0.00;FS=19.331;HaplotypeScore=7.2541;MLEAC=1;MLEAF=0.500;MQ=13.95;MQ0=45;MQRankSum=2.977;QD=0.28;ReadPosRankSum=-0.819;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:157,14:171:78:78,0,173
chrXV	118032	.	A	C	990	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.539;DP=236;Dels=0.00;FS=0.000;HaplotypeScore=6.2417;MLEAC=2;MLEAF=1.00;MQ=18.49;MQ0=24;MQRankSum=2.087;QD=4.19;ReadPosRankSum=2.845;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:11,213:236:91:1023,91,0
chrXV	124063	.	C	T	1803	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=25.04;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1836,189,0
chrXV	124780	.	C	T	1335	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.86;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1368,144,0
chrXV	124888	.	C	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=18.89;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1091,114,0
chrXV	125209	.	A	T	1824	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=23.69;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1857,195,0
chrXV	125231	.	T	C	1888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.278;QD=23.31;ReadPosRankSum=1.689;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1921,210,0
chrXV	125570	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4681;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=18.67;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1527,162,0
chrXV	125599	.	G	A	1660	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.65;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1693,177,0
chrXV	125641	.	C	A	2402	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.32;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2435,255,0
chrXV	126617	.	T	C	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=93;Dels=0.00;FS=2.574;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.341;QD=19.69;ReadPosRankSum=2.924;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:3,89:93:99:1864,198,0
chrXV	126844	.	A	G	1100	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.03;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1133,123,0
chrXV	126866	.	C	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.72;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1486,162,0
chrXV	126903	.	C	T	1922	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.6068;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=17.32;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1955,219,0
chrXV	127096	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7149;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.12;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2068,225,0
chrXV	127240	.	G	A	2812	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.33;SB=-1.287e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2845,294,0
chrXV	127669	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.87;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1771,198,0
chrXV	128367	.	G	T	2503	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=23.18;SB=-1.466e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2536,264,0
chrXV	128405	.	G	A	2294	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=21.44;SB=-1.446e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2327,249,0
chrXV	128411	.	T	C	2080	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=19.44;SB=-1.401e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2113,234,0
chrXV	128415	.	C	T	2045	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=49.37;MQ0=0;QD=19.85;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2078,222,0
chrXV	128446	.	A	C	1663	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=19.11;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1696,186,0
chrXV	128570	.	G	A	731	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=17.83;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:78:764,78,0
chrXV	128594	.	A	G	522	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.6500;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=15.35;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:60:555,60,0
chrXV	128636	.	G	A	1215	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.60;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1248,132,0
chrXV	128693	.	G	A	1564	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=17.77;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1597,177,0
chrXV	128694	.	G	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=6.5330;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.80;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1564,165,0
chrXV	128745	.	C	T	1610	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.9480;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=17.69;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1643,177,0
chrXV	129347	.	C	T	1564	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.67;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1597,168,0
chrXV	129440	.	G	A	1614	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.24;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1647,180,0
chrXV	129671	.	A	G	1598	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.19;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1631,177,0
chrXV	130049	.	A	G	1610	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.68;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1643,180,0
chrXV	130079	.	A	C	2144	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.30;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2177,234,0
chrXV	130289	.	A	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.53;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1186,129,0
chrXV	130337	.	C	T	1138	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.76;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1171,123,0
chrXV	130506	.	T	C	1931	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.54;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1964,210,0
chrXV	130959	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.58;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1457,159,0
chrXV	131018	.	C	T	1801	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.44;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1834,195,0
chrXV	131327	.	C	T	2007	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2040,222,0
chrXV	131471	.	T	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.61;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1801,201,0
chrXV	131694	.	A	G	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.692;QD=20.48;ReadPosRankSum=1.692;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1835,204,0
chrXV	131858	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.06;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1532,159,0
chrXV	132086	.	T	A	1593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.796;DP=86;Dels=0.00;FS=11.631;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;MQRankSum=-0.072;QD=18.52;ReadPosRankSum=2.892;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:3,82:86:99:1626,174,0
chrXV	132089	.	T	C	1457	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=16.75;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1490,165,0
chrXV	132134	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.21;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1249,132,0
chrXV	132152	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=7.641;HaplotypeScore=4.3333;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;MQRankSum=-0.450;QD=16.13;ReadPosRankSum=2.317;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:1243,135,0
chrXV	132179	.	A	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.96;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1680,177,0
chrXV	132221	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4376;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.65;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1726,186,0
chrXV	132501	.	G	A	2152	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.56;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2185,237,0
chrXV	132600	.	A	G	1459	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=20.84;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1492,159,0
chrXV	132664	.	G	A	695	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=16.95;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:78:728,78,0
chrXV	132685	.	T	C	984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;MQRankSum=-1.516;QD=20.50;ReadPosRankSum=1.660;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1017,111,0
chrXV	132713	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.78;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1101,114,0
chrXV	132737	.	G	A	956	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=16.20;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:989,105,0
chrXV	133533	.	T	G	1102	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.61;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1135,120,0
chrXV	133595	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.93;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1239,129,0
chrXV	133637	.	G	A	1331	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=21.82;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1364,144,0
chrXV	133694	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=66;Dels=0.00;FS=8.543;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;MQRankSum=0.318;QD=18.58;ReadPosRankSum=2.338;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1259,138,0
chrXV	133697	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=19.55;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1284,138,0
chrXV	134063	.	G	A	1952	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.1656;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=21.45;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1985,207,0
chrXV	134110	.	C	A	2021	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=25.58;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2054,213,0
chrXV	135710	.	G	A	1831	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=24.41;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1864,195,0
chrXV	135770	.	G	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.0916;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.32;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:79:99:1480,153,0
chrXV	135911	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.11;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:962,102,0
chrXV	136554	.	C	T	1596	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.55;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1629,171,0
chrXV	136622	.	T	C	980	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.0613;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.22;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1013,111,0
chrXV	136650	.	C	T	1062	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.31;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1095,114,0
chrXV	137682	.	G	A	739	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.42;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:772,87,0
chrXV	137942	.	G	T	1000	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.61;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1033,117,0
chrXV	138191	.	G	C	522	filter	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.75;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,24:24:63:555,63,0
chrXV	138847	.	T	C	1731	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4381;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.78;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1764,189,0
chrXV	139359	.	T	G	1819	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.713;QD=21.15;ReadPosRankSum=1.447;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1852,207,0
chrXV	139611	.	A	G	1405	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.4105;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=19.79;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1438,153,0
chrXV	139749	.	T	A	1922	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.080;QD=22.09;ReadPosRankSum=1.691;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1955,207,0
chrXV	139908	.	A	G	2725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=116;Dels=0.00;FS=6.135;HaplotypeScore=12.2495;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.316;QD=23.49;ReadPosRankSum=1.702;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,114:116:99:2758,297,0
chrXV	140746	.	C	T	875	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=21.34;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:96:908,96,0
chrXV	140760	.	A	G	718	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.047;DP=45;Dels=0.00;FS=6.335;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.355;QD=15.96;ReadPosRankSum=2.220;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:2,41:45:84:751,84,0
chrXV	140931	.	G	A	1242	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.79;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1275,132,0
chrXV	141126	.	A	G	2095	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.29;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2128,228,0
chrXV	141147	.	T	A	2800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=3.863;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-1.732;QD=21.54;ReadPosRankSum=1.705;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:1,129:130:99:2833,309,0
chrXV	141631	.	G	A	2236	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.70;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2269,237,0
chrXV	141856	.	G	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=22.62;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1865,198,0
chrXV	142001	.	C	T	2257	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.09;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2290,243,0
chrXV	142587	.	T	C	2451	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=23.12;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2484,270,0
chrXV	142609	.	A	G	2572	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=22.37;SB=-1.479e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2605,288,0
chrXV	142626	.	C	T	2615	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=20.43;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,125:128:99:2648,279,0
chrXV	142645	.	A	G	2234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=124;Dels=0.00;FS=7.335;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;MQRankSum=-0.136;QD=18.02;ReadPosRankSum=2.366;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:2,116:124:99:2267,252,0
chrXV	142734	.	C	T	2125	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.414;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.071;QD=21.46;ReadPosRankSum=-0.318;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2158,209,0
chrXV	143045	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=21.33;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1398,147,0
chrXV	143321	.	C	T	1940	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.8597;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.09;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1973,213,0
chrXV	143597	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.19;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1098,114,0
chrXV	143696	.	G	A	2176	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.96;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2209,231,0
chrXV	143727	.	G	T	2397	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.49;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,115:117:99:2430,264,0
chrXV	143787	.	C	T	2223	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.78;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2256,240,0
chrXV	143811	.	G	A	1653	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.16;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1686,180,0
chrXV	143890	.	T	C	1004	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.31;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1037,117,0
chrXV	143908	.	A	G	955	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=15.40;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:988,111,0
chrXV	143915	.	A	G	1018	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=16.69;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1051,114,0
chrXV	143959	.	G	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=18.43;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1157,123,0
chrXV	143989	.	T	C	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=0.234;QD=20.64;ReadPosRankSum=1.639;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1560,171,0
chrXV	144026	.	T	A	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.593;QD=20.92;ReadPosRankSum=1.637;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1623,171,0
chrXV	144117	.	C	T	1643	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.67;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1676,177,0
chrXV	144197	.	C	T	1289	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=18.68;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1322,141,0
chrXV	144215	.	G	A	951	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.3828;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=16.40;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:984,108,0
chrXV	144338	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.86;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1331,150,0
chrXV	144354	.	G	A	1227	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.04;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1260,132,0
chrXV	144655	.	C	T	1766	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=19.41;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1799,192,0
chrXV	145028	.	T	C	788	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=15.15;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:93:821,93,0
chrXV	145303	.	T	C	1622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.078;QD=23.85;ReadPosRankSum=1.681;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1655,183,0
chrXV	145331	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.37;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1454,162,0
chrXV	145519	.	T	C	1722	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.593;QD=22.96;ReadPosRankSum=1.685;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:1,72:75:99:1755,192,0
chrXV	145551	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.68;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1666,177,0
chrXV	145933	.	C	T	1956	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=22.48;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1989,210,0
chrXV	146203	.	C	T	2164	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=20.04;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2197,231,0
chrXV	146225	.	G	A	1773	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=19.92;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1806,189,0
chrXV	146231	.	T	C	1774	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=19.71;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1807,198,0
chrXV	146843	.	C	T	2195	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=25.23;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2228,237,0
chrXV	146922	.	T	C	2065	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=103;Dels=0.00;FS=5.815;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.530;QD=20.05;ReadPosRankSum=1.698;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2098,231,0
chrXV	146962	.	A	G	2192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.331;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.498;QD=19.75;ReadPosRankSum=3.378;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:4,107:111:99:2225,249,0
chrXV	147247	.	A	T	1059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=73;Dels=0.04;FS=0.000;HaplotypeScore=10.8798;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=-1.579;QD=14.51;ReadPosRankSum=1.681;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1092,114,0
chrXV	147274	.	T	A	1472	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-0.762;QD=19.37;ReadPosRankSum=1.686;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1505,159,0
chrXV	147540	.	G	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=23.33;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1853,195,0
chrXV	147582	.	C	T	1725	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.31;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1758,183,0
chrXV	147840	.	A	G	1869	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.00;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1902,207,0
chrXV	147891	.	A	C	1465	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.35;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1498,162,0
chrXV	147981	.	G	A	1259	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.98;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1292,141,0
chrXV	148159	.	T	C	1736	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.440;QD=20.67;ReadPosRankSum=1.690;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1769,195,0
chrXV	148695	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=23.56;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1305,138,0
chrXV	148719	.	C	G	1068	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=18.10;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1101,120,0
chrXV	148731	.	C	T	996	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=16.88;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1029,108,0
chrXV	148734	.	C	T	1010	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=17.12;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1043,111,0
chrXV	148894	.	A	G	2170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=7.983;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.629;QD=23.59;ReadPosRankSum=2.343;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2203,246,0
chrXV	148926	.	T	A	1406	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=20.38;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1439,159,0
chrXV	148942	.	C	T	995	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=15.55;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1028,108,0
chrXV	148958	.	A	C	935	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=15.85;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:968,105,0
chrXV	149007	.	G	A	1202	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=16.69;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1235,129,0
chrXV	149037	.	T	A	1066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;DP=62;Dels=0.00;FS=17.993;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=-0.014;QD=17.19;ReadPosRankSum=3.309;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:4,58:62:99:1099,114,0
chrXV	149046	.	G	A	1177	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.47;MQ0=0;QD=18.11;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1210,126,0
chrXV	149205	.	A	C	2070	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1446;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=19.35;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2103,237,0
chrXV	149214	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=18.54;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,97:100:99:1887,207,0
chrXV	149247	.	G	C	1534	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=16.32;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1567,171,0
chrXV	149268	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=51.32;MQ0=0;QD=16.18;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1457,162,0
chrXV	149394	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;MQRankSum=0.950;QD=20.98;ReadPosRankSum=1.676;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1334,147,0
chrXV	149547	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.67;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1376,153,0
chrXV	149706	.	A	T	1882	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.928;HaplotypeScore=6.7354;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=1.567;QD=22.14;ReadPosRankSum=1.691;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1915,204,0
chrXV	150543	.	C	T	2442	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=24.67;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2475,258,0
chrXV	150565	.	T	C	2857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.352;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=1.295;QD=23.81;ReadPosRankSum=1.703;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:1,119:120:99:2890,315,0
chrXV	150653	.	T	C	1441	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.59;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1474,168,0
chrXV	150859	.	G	A	2318	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=17.69;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2351,249,0
chrXV	150878	.	G	A	2423	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.06;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:2456,261,0
chrXV	150962	.	A	G	2275	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.09;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2308,258,0
chrXV	151148	.	C	A	2330	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.91;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2363,261,0
chrXV	151183	.	T	C	2601	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=22.04;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2634,291,0
chrXV	151304	.	C	T	2479	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.6189;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.19;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,113:117:99:2512,267,0
chrXV	151369	.	T	C	2246	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.92;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2279,249,0
chrXV	151541	.	A	G	1583	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.99;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1616,174,0
chrXV	151709	.	A	T	2682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.01;FS=0.000;HaplotypeScore=12.1616;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.705;QD=20.79;ReadPosRankSum=1.650;SB=-1.542e+03	GT:AD:DP:GQ:PL	1/1:1,127:128:99:2715,300,0
chrXV	151910	.	T	A	2296	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.73;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2329,255,0
chrXV	151943	.	T	C	1900	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.59;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1933,213,0
chrXV	151997	.	G	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=18.72;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1662,177,0
chrXV	152141	.	G	A	2094	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2127,225,0
chrXV	152407	.	T	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.70;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1597,177,0
chrXV	152922	.	C	T	1102	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.68;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1135,117,0
chrXV	153262	.	T	C	1634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=79;Dels=0.00;FS=2.762;HaplotypeScore=7.9676;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.921;QD=20.68;ReadPosRankSum=2.294;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1667,186,0
chrXV	153317	.	T	C	2293	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.04;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2326,255,0
chrXV	153615	.	T	C	4232.01	PASS	AC=2;AF=1.00;AN=2;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.45;SB=-1.553e+03	GT:AD:DP:GQ:PL	1/1:0,159:160:99:4232,456,0
chrXV	154056	.	T	C	1960	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=19.22;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:1993,213,0
chrXV	154071	.	C	T	2091	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.8245;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=19.01;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2124,234,0
chrXV	154073	.	G	A	2279	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.6132;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=20.17;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2312,243,0
chrXV	154165	.	T	C	2680	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.27;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,124:126:99:2713,297,0
chrXV	154173	.	C	T	2839	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=20.87;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,134:136:99:2872,297,0
chrXV	154445	.	C	T	1327	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.75;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1360,144,0
chrXV	154799	.	T	G	502	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=14.76;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:63:535,63,0
chrXV	154898	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;MQRankSum=1.289;QD=19.71;ReadPosRankSum=2.377;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1373,150,0
chrXV	154904	.	A	G	1389	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.70;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1422,159,0
chrXV	154993	.	A	T	931	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=16.62;SB=-5.801e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:99:964,102,0
chrXV	154995	.	A	T	772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=0.449;QD=13.79;ReadPosRankSum=1.668;SB=-5.901e+01	GT:AD:DP:GQ:PL	1/1:1,55:56:93:805,93,0
chrXV	155221	.	G	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=22.52;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1587,177,0
chrXV	155704	.	G	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.33;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1188,126,0
chrXV	155779	.	C	T	1762	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.75;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1795,189,0
chrXV	155823	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=19.05;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1519,162,0
chrXV	155997	.	C	A	1130	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5228;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.93;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1163,123,0
chrXV	156059	.	T	C	716	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=16.27;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:749,84,0
chrXV	156082	.	A	G	621	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=14.44;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:654,75,0
chrXV	156178	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.5663;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.18;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1708,183,0
chrXV	156337	.	T	C	865	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.40;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:898,102,0
chrXV	156508	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.27;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1414,159,0
chrXV	156746	.	A	G	2278	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.48;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,93:97:99:2311,252,0
chrXV	156784	.	A	G	2638	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.94;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2671,297,0
chrXV	156847	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=78;Dels=0.00;FS=6.077;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-1.462;QD=17.68;ReadPosRankSum=1.597;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1412,162,0
chrXV	156898	.	C	T	2390	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.76;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2423,255,0
chrXV	157101	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.67;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1960,207,0
chrXV	157219	.	T	C	1935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=89;Dels=0.00;FS=5.890;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.444;QD=21.74;ReadPosRankSum=2.921;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:3,86:89:99:1968,222,0
chrXV	158453	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.99;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1572,171,0
chrXV	158905	.	G	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.37;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1092,114,0
chrXV	159066	.	G	A	1292	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=15.02;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1325,141,0
chrXV	159092	.	G	A	1735	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=17.35;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1768,195,0
chrXV	159369	.	G	A	1071	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=23.28;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1104,117,0
chrXV	159725	.	A	G	838	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=46.84;MQ0=0;QD=21.49;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:871,99,0
chrXV	159763	.	A	G	831	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=20.27;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:864,102,0
chrXV	160001	.	G	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=21.04;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1190,126,0
chrXV	160139	.	G	A	931	SnpCluster	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=10.46;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:964,108,0
chrXV	160141	.	T	C	841	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=87;Dels=0.00;FS=1.890;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.24;MQ0=0;MQRankSum=-1.200;QD=9.67;ReadPosRankSum=3.654;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:5,81:87:99:874,102,0
chrXV	160142	.	G	T	802	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.528;DP=86;Dels=0.00;FS=1.890;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;MQRankSum=0.720;QD=9.33;ReadPosRankSum=3.636;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:5,81:86:96:835,96,0
chrXV	160153	.	G	C	662	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=8.60;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:81:695,81,0
chrXV	160154	.	G	A	668	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.84;MQ0=0;QD=8.68;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:81:701,81,0
chrXV	160163	.	G	A	537	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=26.92;MQ0=0;QD=7.16;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:66:570,66,0
chrXV	160688	.	G	A	1981	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=21.77;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2014,207,0
chrXV	161169	.	T	C	496	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.96;MQ0=0;QD=18.37;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:60:529,60,0
chrXV	161174	.	T	A	509	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=18.85;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:57:542,57,0
chrXV	161509	.	T	C	1063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.199;DP=60;Dels=0.00;FS=2.932;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.063;QD=17.72;ReadPosRankSum=2.325;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:2,57:60:99:1096,123,0
chrXV	161586	.	T	C	1756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.825;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4326;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=-1.257;QD=23.41;ReadPosRankSum=2.906;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1789,192,0
chrXV	161757	.	G	A	2187	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.78;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2220,240,0
chrXV	161920	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=1.397;QD=17.48;ReadPosRankSum=1.695;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:1,92:95:99:1694,186,0
chrXV	161986	.	C	T	2496	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.6659;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.52;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2529,267,0
chrXV	162027	.	C	T	2101	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.20;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2134,222,0
chrXV	162043	.	T	C	1881	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=18.44;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1914,210,0
chrXV	162056	.	C	T	1640	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=17.26;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1673,171,0
chrXV	162065	.	C	T	1797	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=16.64;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1830,195,0
chrXV	162198	.	T	C	2658	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.225;QD=21.44;ReadPosRankSum=1.704;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:1,122:124:99:2691,291,0
chrXV	162379	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.32;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2101,225,0
chrXV	162419	.	G	C	1633	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=10.3126;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=16.49;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1666,183,0
chrXV	162766	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=15.1410;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.03;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1727,189,0
chrXV	163213	.	A	G	2063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=105;Dels=0.00;FS=5.018;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.989;QD=19.65;ReadPosRankSum=3.305;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:4,101:105:99:2096,231,0
chrXV	163253	.	T	C	1849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=91;Dels=0.00;FS=5.071;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.617;QD=20.32;ReadPosRankSum=1.694;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1882,204,0
chrXV	163540	.	T	A	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.408;QD=19.65;ReadPosRankSum=1.528;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1389,156,0
chrXV	163702	.	T	C	862	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.146;DP=67;Dels=0.01;FS=2.903;HaplotypeScore=7.0008;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.019;QD=12.87;ReadPosRankSum=2.222;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:895,99,0
chrXV	163703	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=67;Dels=0.03;FS=3.912;HaplotypeScore=7.0008;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=0.379;QD=14.00;ReadPosRankSum=1.624;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:971,108,0
chrXV	163753	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=15.90;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1035,114,0
chrXV	163776	.	C	G	1113	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=19.19;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1146,126,0
chrXV	163799	.	G	A	1035	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.16;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1068,114,0
chrXV	163912	.	A	T	1152	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.72;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1185,126,0
chrXV	163943	.	A	C	1126	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.32;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1159,123,0
chrXV	163988	.	G	A	1315	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=18.26;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1348,144,0
chrXV	164632	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.53;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1224,129,0
chrXV	164683	.	C	T	976	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.14;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1009,108,0
chrXV	164708	.	A	G	821	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=47;Dels=0.00;FS=2.595;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;MQRankSum=1.284;QD=17.47;ReadPosRankSum=2.851;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:3,44:47:93:854,93,0
chrXV	164935	.	T	C	1205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.599;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.220;QD=16.97;ReadPosRankSum=1.683;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1238,141,0
chrXV	165790	.	C	G	1645	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.23;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1678,186,0
chrXV	166007	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.85;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1560,171,0
chrXV	166009	.	A	C	1478	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.71;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1511,165,0
chrXV	166088	.	G	A	849	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=15.72;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:882,96,0
chrXV	166160	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.329;DP=61;Dels=0.00;FS=2.748;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;MQRankSum=-1.600;QD=17.92;ReadPosRankSum=2.369;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1126,123,0
chrXV	166163	.	C	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=18.76;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1196,123,0
chrXV	166172	.	G	A	1066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;MQRankSum=-0.767;QD=17.48;ReadPosRankSum=1.562;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1099,99,0
chrXV	166324	.	G	A	1106	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.4825;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.48;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1139,120,0
chrXV	166700	.	A	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.49;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1945,210,0
chrXV	166875	.	C	T	2003	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2036,207,0
chrXV	167021	.	A	T	2897	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=23.36;SB=-1.556e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2930,306,0
chrXV	167078	.	A	T	2892	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.93;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2925,306,0
chrXV	167344	.	T	A	2453	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=23.59;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2486,261,0
chrXV	167627	.	G	A	2056	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=45.70;MQ0=0;QD=16.72;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2089,222,0
chrXV	167650	.	T	C	1690	SnpCluster	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.55;MQ0=0;QD=15.09;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:1723,189,0
chrXV	167656	.	A	G	1673	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=2.838;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;MQRankSum=-1.128;QD=15.49;ReadPosRankSum=2.404;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:2,106:108:99:1706,186,0
chrXV	167658	.	T	C	1581	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=3.959;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;MQRankSum=-1.441;QD=14.78;ReadPosRankSum=1.700;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:1614,186,0
chrXV	167659	.	A	G	1646	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.32;MQ0=0;QD=15.38;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1679,186,0
chrXV	167717	.	A	C	2266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=6.021;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.866;QD=22.66;ReadPosRankSum=1.697;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2299,246,0
chrXV	167794	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.41;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1344,147,0
chrXV	167815	.	C	G	943	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.06;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:976,108,0
chrXV	167840	.	G	C	1052	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=19.13;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1085,120,0
chrXV	167922	.	C	T	3668.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=23.82;SB=-1.649e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3668,382,0
chrXV	167933	.	C	T	3613.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.17;SB=-1.552e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3613,384,0
chrXV	168100	.	T	C	2066	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=99;Dels=0.00;FS=2.860;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.306;QD=20.87;ReadPosRankSum=2.301;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:2,97:99:99:2099,228,0
chrXV	168160	.	A	G	2368	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=22.13;SB=-1.198e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2401,261,0
chrXV	168164	.	T	A	2402	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.66;SB=-1.348e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2435,264,0
chrXV	168183	.	A	G	2555	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=5.1107;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=19.96;SB=-1.424e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2588,294,0
chrXV	168295	.	A	G	2196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=101;Dels=0.00;FS=3.322;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;MQRankSum=1.389;QD=21.74;ReadPosRankSum=1.698;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2229,243,0
chrXV	168347	.	C	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.38;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1649,186,0
chrXV	168349	.	A	C	1673	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=17.43;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1706,189,0
chrXV	168404	.	A	C	1806	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=-0.139;QD=17.88;ReadPosRankSum=1.697;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:1,99:101:99:1839,201,0
chrXV	168744	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=4.445;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=-0.812;QD=21.91;ReadPosRankSum=1.624;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1435,159,0
chrXV	168885	.	C	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=10.3308;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.61;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1661,180,0
chrXV	169150	.	G	A	1062	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.24;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1095,114,0
chrXV	169333	.	T	C	1312	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.7152;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.02;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1345,144,0
chrXV	169704	.	A	G	670	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.61;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:78:703,78,0
chrXV	169755	.	A	G	511	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=18.25;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:60:544,60,0
chrXV	169835	.	A	G	405	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=2.7059;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=15.58;SB=-6.657e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:48:438,48,0
chrXV	169911	.	A	G	562	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.245;QD=17.03;ReadPosRankSum=2.301;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:2,31:33:66:595,66,0
chrXV	170116	.	T	G	1426	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=0.160;QD=26.41;ReadPosRankSum=2.359;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1459,156,0
chrXV	170193	.	A	C	680	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.733;QD=21.94;ReadPosRankSum=1.062;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,30:31:78:713,78,0
chrXV	170199	.	A	G	622	filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.73;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,30:30:75:655,75,0
chrXV	170344	.	C	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=23.02;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1115,117,0
chrXV	170368	.	T	C	1074	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=19.89;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1107,120,0
chrXV	170583	.	T	C	822	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=17.49;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:855,93,0
chrXV	170671	.	T	C	905	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=16.16;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:938,105,0
chrXV	170682	.	T	A	833	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=13.88;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:93:866,93,0
chrXV	170746	.	A	T	1030	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=-0.027;QD=16.35;ReadPosRankSum=1.677;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1063,117,0
chrXV	170921	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.06;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1423,153,0
chrXV	170927	.	A	C	1315	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=18.79;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1348,150,0
chrXV	171150	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=74;Dels=0.00;FS=10.168;HaplotypeScore=9.3868;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=-2.932;QD=17.99;ReadPosRankSum=2.904;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:4,70:74:99:1364,150,0
chrXV	171213	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=18.34;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1445,150,0
chrXV	171288	.	T	C	2057	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.43;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2090,234,0
chrXV	171306	.	C	T	2080	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.80;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2113,219,0
chrXV	171511	.	A	C	782	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=15.96;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:815,93,0
chrXV	171515	.	G	A	835	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=16.37;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:93:868,93,0
chrXV	171745	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.2814;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=16.45;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:1711,180,0
chrXV	171973	.	T	C	1567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=96;Dels=0.00;FS=6.251;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;MQRankSum=0.295;QD=16.32;ReadPosRankSum=2.373;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:2,94:96:99:1600,174,0
chrXV	171981	.	C	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=15.92;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1577,171,0
chrXV	171985	.	C	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;QD=15.57;SB=-1.225e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1559,171,0
chrXV	172515	.	T	C	2476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.704;DP=126;Dels=0.00;FS=3.081;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.615;QD=19.65;ReadPosRankSum=1.704;SB=-1.557e+03	GT:AD:DP:GQ:PL	1/1:1,123:126:99:2509,279,0
chrXV	172638	.	C	T	1766	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.35;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1799,195,0
chrXV	172671	.	C	A	1420	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.29;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1453,159,0
chrXV	172704	.	C	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=17.21;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1186,126,0
chrXV	172708	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=12.9195;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;MQRankSum=1.455;QD=14.63;ReadPosRankSum=1.594;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1145,126,0
chrXV	172752	.	C	T	1554	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=9.1389;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=17.27;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1587,168,0
chrXV	172825	.	C	T	2004	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.32;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2037,216,0
chrXV	173069	.	C	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=20.64;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1622,180,0
chrXV	173080	.	G	A	1383	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=18.69;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1416,159,0
chrXV	173085	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.48;MQ0=0;QD=18.83;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1445,153,0
chrXV	173907	.	G	A	2676	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.6922;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.27;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2709,288,0
chrXV	174090	.	G	C	1526	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7681;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.62;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1559,168,0
chrXV	174201	.	A	G	3405.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.2116;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=22.85;SB=-1.790e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3405,372,0
chrXV	174324	.	T	C	1706	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.32;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1739,192,0
chrXV	174465	.	G	T	3406.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.33;SB=-1.795e+03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:3406,360,0
chrXV	174675	.	T	C	1383	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1225;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.21;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1416,159,0
chrXV	175512	.	C	T	2291	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=24.12;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2324,249,0
chrXV	175584	.	G	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.7067;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.04;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1980,204,0
chrXV	175588	.	A	G	1773	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.36;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1806,195,0
chrXV	175720	.	A	G	1633	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.49;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1666,180,0
chrXV	175815	.	G	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.3439;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=19.51;SB=-1.075e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1711,186,0
chrXV	175941	.	A	T	2060	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=94;Dels=0.00;FS=7.520;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=-0.228;QD=21.91;ReadPosRankSum=2.343;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:2,92:94:99:2093,228,0
chrXV	176091	.	G	A	1529	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=19.86;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1562,165,0
chrXV	176217	.	G	A	1785	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.6337;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.31;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1818,186,0
chrXV	176239	.	G	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.61;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1661,171,0
chrXV	176268	.	A	T	1476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=0.595;QD=23.06;ReadPosRankSum=1.624;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1509,159,0
chrXV	176298	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.79;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1339,147,0
chrXV	176348	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=18.74;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1176,129,0
chrXV	176425	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=24.09;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1141,120,0
chrXV	176466	.	C	T	1026	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=18.65;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1059,111,0
chrXV	176469	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=4.771;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-1.732;QD=17.00;ReadPosRankSum=0.942;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:85:1002,85,0
chrXV	176547	.	C	T	2204	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=24.49;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2237,234,0
chrXV	176616	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.26;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1680,195,0
chrXV	176940	.	G	A	3086	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.30;SB=-1.634e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3119,330,0
chrXV	177015	.	A	G	2171	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.7262;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.71;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2204,249,0
chrXV	177495	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.6848;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.51;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1750,189,0
chrXV	177738	.	G	A	1723	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=12.0542;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=20.27;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1756,183,0
chrXV	177798	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.2126;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=16.15;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:99:1180,132,0
chrXV	178021	.	C	T	2217	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=24.10;SB=-1.188e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2250,234,0
chrXV	178287	.	A	G	1070	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=18.14;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1103,123,0
chrXV	178296	.	C	T	1171	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=18.89;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1204,126,0
chrXV	178474	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1415,153,0
chrXV	178587	.	G	A	1707	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8158;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.46;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1740,192,0
chrXV	178731	.	C	T	1779	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;DP=82;Dels=0.00;FS=4.613;HaplotypeScore=8.8215;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.647;QD=21.70;ReadPosRankSum=-0.791;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1812,173,0
chrXV	179031	.	T	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.10;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:79:99:1700,183,0
chrXV	179481	.	C	T	1655	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1688,180,0
chrXV	179760	.	C	T	3039	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.93;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3072,327,0
chrXV	179850	.	A	G	1935	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.0968;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.24;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1968,216,0
chrXV	180056	.	A	C	3127	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=22.50;SB=-1.735e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3160,345,0
chrXV	180123	.	G	C	2663	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=20.64;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2696,294,0
chrXV	180159	.	A	G	1991	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;DP=103;Dels=0.00;FS=8.872;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-0.094;QD=19.33;ReadPosRankSum=3.320;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:4,99:103:99:2024,225,0
chrXV	180177	.	G	A	2069	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=20.49;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2102,222,0
chrXV	180210	.	C	T	2097	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=21.40;SB=-1.299e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2130,225,0
chrXV	180228	.	T	G	1956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=103;Dels=0.00;FS=3.554;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.121;QD=18.99;ReadPosRankSum=1.698;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:1,101:103:99:1989,222,0
chrXV	181062	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.09;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1350,141,0
chrXV	181290	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=18.77;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1366,141,0
chrXV	181326	.	C	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=16.99;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1222,138,0
chrXV	181433	.	C	T	1640	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.76;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1673,174,0
chrXV	181452	.	T	A	1554	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=18.95;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1587,162,0
chrXV	181602	.	C	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.01;FS=0.000;HaplotypeScore=72.2073;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=17.46;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1412,153,0
chrXV	181640	.	A	G	979	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=68;Dels=0.00;FS=9.810;HaplotypeScore=7.4685;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;MQRankSum=-0.718;QD=14.40;ReadPosRankSum=2.376;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:2,65:68:99:1012,111,0
chrXV	181747	.	T	C	1192	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.37;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1225,135,0
chrXV	181856	.	T	C	1043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;MQRankSum=0.440;QD=17.68;ReadPosRankSum=1.674;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1076,114,0
chrXV	181861	.	A	G	1068	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=4.164;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;MQRankSum=1.213;QD=17.80;ReadPosRankSum=1.675;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1101,120,0
chrXV	181960	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=21.90;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1325,144,0
chrXV	182074	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=54;Dels=0.00;FS=3.441;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.536;QD=22.48;ReadPosRankSum=1.667;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:99:1247,141,0
chrXV	182185	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.73;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1335,150,0
chrXV	182299	.	T	C	969	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.53;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1002,111,0
chrXV	182374	.	C	T	1116	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=16.41;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1149,120,0
chrXV	182386	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=15.89;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1288,138,0
chrXV	191548	.	T	C	1184	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.68;SB=-2.080e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1217,135,0
chrXV	193911	.	C	T	1694	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.44;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1727,183,0
chrXV	194198	.	T	C	1832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=112;Dels=0.00;FS=7.822;HaplotypeScore=6.3382;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.874;QD=16.36;ReadPosRankSum=1.700;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:1,108:112:99:1865,213,0
chrXV	194515	.	A	G	1945	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0646;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.15;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1978,213,0
chrXV	194759	.	G	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.28;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1749,192,0
chrXV	194853	.	A	G	1696	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.2048;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.477;QD=17.48;ReadPosRankSum=1.696;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1729,192,0
chrXV	194959	.	G	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=18.63;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1356,141,0
chrXV	195091	.	A	G	1633	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.6058;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.94;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1666,183,0
chrXV	195644	.	A	C	2172	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.09;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2205,237,0
chrXV	196663	.	G	T	963	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=10.6635;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=13.37;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:72:99:996,108,0
chrXV	196976	.	A	C	358	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.27;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:42:391,42,0
chrXV	197158	.	A	T	2790	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.07;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2823,297,0
chrXV	198587	.	T	G	1091	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.84;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1124,120,0
chrXV	198603	.	A	G	1025	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=18.64;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1058,120,0
chrXV	198682	.	A	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=16.14;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1082,117,0
chrXV	199186	.	T	C	2165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=4.559;HaplotypeScore=6.5293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.762;QD=21.65;ReadPosRankSum=1.697;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2198,246,0
chrXV	199783	.	A	G	1875	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.04;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1908,207,0
chrXV	200429	.	C	T	1558	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.13;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1591,171,0
chrXV	201792	.	T	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.74;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1454,159,0
chrXV	202012	.	C	T	1937	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.52;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1970,210,0
chrXV	202087	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.93;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1189,132,0
chrXV	202214	.	G	A	1591	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.72;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1624,177,0
chrXV	202330	.	C	T	2727	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.82;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,123:125:99:2760,291,0
chrXV	202368	.	C	T	1900	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.43;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1933,210,0
chrXV	203132	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4514;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.17;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1341,141,0
chrXV	203233	.	A	G	1700	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.0118;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.25;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1733,192,0
chrXV	203284	.	A	G	1777	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.130;QD=22.21;ReadPosRankSum=1.602;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1810,204,0
chrXV	203947	.	T	C	1226	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.488;DP=71;Dels=0.00;FS=6.208;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.147;QD=17.27;ReadPosRankSum=1.683;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1259,135,0
chrXV	204593	.	C	T	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.296;DP=121;Dels=0.00;FS=83.439;HaplotypeScore=45.5316;MLEAC=1;MLEAF=0.500;MQ=56.24;MQ0=0;MQRankSum=-0.717;QD=0.17;ReadPosRankSum=-2.974;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,30:121:50:50,0,547
chrXV	204722	.	C	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=22.98;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1182,126,0
chrXV	204903	.	G	A	2288	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=23.83;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2321,246,0
chrXV	205095	.	T	A	1525	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=19.06;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1558,165,0
chrXV	205106	.	T	A	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=0.390;QD=19.14;ReadPosRankSum=1.689;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1564,165,0
chrXV	205126	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=17.48;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1414,153,0
chrXV	205234	.	T	C	1371	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=19.31;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1404,156,0
chrXV	205237	.	T	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.42;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1468,150,0
chrXV	205475	.	C	T	1749	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.41;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1782,195,0
chrXV	205496	.	G	A	1824	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7385;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=19.61;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1857,195,0
chrXV	205541	.	A	T	1905	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.89;MQ0=0;QD=20.93;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1938,204,0
chrXV	205574	.	C	T	1753	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.01;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1786,189,0
chrXV	205723	.	C	G	2797	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=22.93;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2830,303,0
chrXV	205739	.	C	T	2918	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=8.5086;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.30;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2951,321,0
chrXV	205799	.	C	T	2441	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.47;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2474,258,0
chrXV	205904	.	T	A	1772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=87;Dels=0.00;FS=2.988;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;MQRankSum=-0.246;QD=20.37;ReadPosRankSum=2.363;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1805,186,0
chrXV	205985	.	T	C	4432.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=1.436;QD=21.51;ReadPosRankSum=2.642;SB=-2.305e+03	GT:AD:DP:GQ:PL	1/1:3,202:206:99:4432,474,0
chrXV	206166	.	T	A	2889	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=25.79;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2922,306,0
chrXV	206259	.	T	A	3185	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.7979;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=21.38;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3218,342,0
chrXV	206268	.	A	G	3096	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.941;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.2752;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=0.235;QD=19.97;ReadPosRankSum=2.785;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:3,151:155:99:3129,351,0
chrXV	206718	.	A	G	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;DP=61;Dels=0.00;FS=10.408;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=0.250;QD=20.03;ReadPosRankSum=2.852;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:3,58:61:99:1255,138,0
chrXV	206970	.	T	C	1700	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.8196;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.89;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1733,195,0
chrXV	206985	.	A	G	1639	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;MQRankSum=-0.278;QD=19.75;ReadPosRankSum=1.647;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:1,80:83:99:1672,183,0
chrXV	207058	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.18;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1203,132,0
chrXV	207397	.	G	A	1946	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.19;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1979,219,0
chrXV	207408	.	C	T	2304	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=21.33;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2337,243,0
chrXV	208002	.	G	A	836	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=15.77;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:96:869,96,0
chrXV	208010	.	T	C	810	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=14.73;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:843,93,0
chrXV	208100	.	A	G	1322	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.16;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1355,150,0
chrXV	208220	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.73;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1124,120,0
chrXV	208309	.	T	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.2167;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.75;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1195,126,0
chrXV	208421	.	A	G	1495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;DP=71;Dels=0.00;FS=11.485;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.815;QD=21.06;ReadPosRankSum=2.901;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:3,68:71:99:1528,168,0
chrXV	208452	.	G	A	1377	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.21;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1410,150,0
chrXV	208517	.	A	C	1427	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=19.82;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1460,159,0
chrXV	208556	.	T	C	1432	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.06;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1465,162,0
chrXV	208643	.	G	A	1433	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.11;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1466,153,0
chrXV	208678	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.23;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1389,150,0
chrXV	208904	.	C	T	1687	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.83;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1720,180,0
chrXV	208980	.	A	G	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.009;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.736;QD=19.97;ReadPosRankSum=1.685;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1511,171,0
chrXV	209102	.	T	C	2494	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.88;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2527,276,0
chrXV	209157	.	A	G	2654	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=25.28;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2687,288,0
chrXV	209222	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.99;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1808,195,0
chrXV	209254	.	C	A	1590	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.08;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1623,177,0
chrXV	209279	.	T	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=21.42;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1447,156,0
chrXV	209318	.	A	G	1436	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.67;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1469,168,0
chrXV	209383	.	C	T	1987	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.29;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2020,222,0
chrXV	209483	.	G	A	1956	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.76;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1989,210,0
chrXV	209501	.	A	T	1813	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.60;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1846,195,0
chrXV	209582	.	T	C	1540	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.391;QD=21.69;ReadPosRankSum=1.683;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1573,174,0
chrXV	209698	.	T	C	1247	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;DP=66;Dels=0.00;FS=6.213;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;MQRankSum=-0.831;QD=18.89;ReadPosRankSum=2.894;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:3,63:66:99:1280,144,0
chrXV	209762	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.2720;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=21.70;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1747,186,0
chrXV	209867	.	T	G	1122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=4.638;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;MQRankSum=0.974;QD=17.26;ReadPosRankSum=-0.704;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1155,126,0
chrXV	209903	.	T	C	886	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=18.08;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:919,105,0
chrXV	209963	.	C	T	1392	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=17.62;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1425,150,0
chrXV	209967	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.53;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1339,144,0
chrXV	210056	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=22.75;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1671,183,0
chrXV	210115	.	T	C	1233	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.816;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=-1.202;QD=15.41;ReadPosRankSum=2.388;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:2,77:80:99:1266,141,0
chrXV	210116	.	T	C	1196	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=0;MQRankSum=0.616;QD=14.95;ReadPosRankSum=0.869;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:2,76:80:99:1229,135,0
chrXV	210122	.	A	G	1201	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=45.82;MQ0=0;QD=14.65;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1234,141,0
chrXV	210619	.	G	A	2684	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.85;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2717,291,0
chrXV	210811	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.60;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1850,192,0
chrXV	210847	.	T	C	1980	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=7.1447;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.29;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2013,225,0
chrXV	210877	.	T	C	2195	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.60;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2228,237,0
chrXV	211015	.	C	T	2215	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2248,237,0
chrXV	211081	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.00;FS=7.171;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.600;QD=20.66;ReadPosRankSum=2.369;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:2,59:62:99:1314,147,0
chrXV	211164	.	C	G	1331	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.13;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1364,153,0
chrXV	211180	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.11;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1236,129,0
chrXV	211399	.	A	T	2069	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.90;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2102,222,0
chrXV	211444	.	A	G	1895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.260;QD=21.53;ReadPosRankSum=1.693;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1928,210,0
chrXV	211543	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=70;Dels=0.00;FS=8.932;HaplotypeScore=5.1001;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.268;QD=22.01;ReadPosRankSum=2.343;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:2,68:70:99:1574,180,0
chrXV	211986	.	C	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=18.89;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1695,189,0
chrXV	212114	.	C	T	2343	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.11;SB=-1.439e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2376,255,0
chrXV	212282	.	G	A	1100	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1133,120,0
chrXV	212813	.	T	C	997	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.46;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1030,111,0
chrXV	212987	.	C	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=17.44;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1114,117,0
chrXV	213206	.	G	C	849	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.46;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:96:882,96,0
chrXV	213212	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=17.90;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:910,102,0
chrXV	213233	.	A	T	1082	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=18.03;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1115,117,0
chrXV	213488	.	T	C	1695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.8308;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=0.140;QD=22.91;ReadPosRankSum=1.685;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1728,189,0
chrXV	213740	.	T	C	1816	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=5.344;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=0.409;QD=20.40;ReadPosRankSum=1.693;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1849,201,0
chrXV	213775	.	G	A	2470	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.67;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2503,261,0
chrXV	213834	.	T	C	2653	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.2092;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.95;SB=-1.648e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2686,303,0
chrXV	213883	.	A	T	80.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;DP=72;Dels=0.00;FS=11.872;HaplotypeScore=57.7414;MLEAC=1;MLEAF=0.500;MQ=56.38;MQ0=0;MQRankSum=1.871;QD=1.11;ReadPosRankSum=-0.719;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:58,14:72:99:110,0,318
chrXV	213920	.	T	C	760	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.35;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:90:793,90,0
chrXV	213976	.	G	T	719	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.97;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:752,78,0
chrXV	214077	.	G	A	1484	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.53;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1517,159,0
chrXV	214472	.	C	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=18.60;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1595,174,0
chrXV	214604	.	G	A	1782	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6751;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.58;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1815,186,0
chrXV	214699	.	A	G	1724	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9067;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.55;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1757,192,0
chrXV	214734	.	G	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=17.16;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1234,138,0
chrXV	215175	.	G	A	974	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.17;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1007,108,0
chrXV	215332	.	C	T	1321	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.02;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1354,144,0
chrXV	215865	.	G	A	1725	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.47;MQ0=0;QD=23.00;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1758,189,0
chrXV	216247	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=17.73;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1540,159,0
chrXV	216306	.	T	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=19.70;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1924,210,0
chrXV	216376	.	A	G	1776	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=80;Dels=0.00;FS=4.663;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-1.513;QD=22.20;ReadPosRankSum=1.688;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1809,198,0
chrXV	216399	.	C	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.33;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1713,174,0
chrXV	216932	.	T	A	294.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;MQRankSum=0.626;QD=7.00;ReadPosRankSum=0.576;SB=-5.518e+01	GT:AD:DP:GQ:PL	1/1:3,39:42:17:327,17,0
chrXV	217113	.	C	G	1466	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.85;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1499,174,0
chrXV	217434	.	G	A	1694	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.00;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1727,180,0
chrXV	217521	.	G	A	2849	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.26;SB=-1.587e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2882,303,0
chrXV	218142	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.06;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1486,156,0
chrXV	218547	.	C	T	3324.01	PASS	AC=2;AF=1.00;AN=2;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.91;SB=-1.870e+03	GT:AD:DP:GQ:PL	1/1:0,159:159:99:3324,363,0
chrXV	219832	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.468;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.501;QD=20.07;ReadPosRankSum=1.675;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1237,138,0
chrXV	220591	.	T	C	2518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=112;Dels=0.00;FS=3.050;HaplotypeScore=4.2599;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.545;QD=22.48;ReadPosRankSum=1.701;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:1,110:112:99:2551,282,0
chrXV	220716	.	A	T	1024	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=21.79;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1057,111,0
chrXV	220730	.	A	G	1070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.600;QD=20.58;ReadPosRankSum=1.666;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1103,123,0
chrXV	220880	.	G	A	1772	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1805,189,0
chrXV	220974	.	A	G	919	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.02;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:952,105,0
chrXV	221003	.	G	A	1041	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=19.64;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1074,114,0
chrXV	221075	.	G	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=6.2470;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.39;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1130,123,0
chrXV	221105	.	T	C	891	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=18.96;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:924,102,0
chrXV	221112	.	A	G	817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=3.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;MQRankSum=-1.652;QD=19.00;ReadPosRankSum=1.491;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:93:850,93,0
chrXV	221465	.	C	T	900	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=20.45;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:933,99,0
chrXV	221858	.	C	T	574	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=15.11;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:63:607,63,0
chrXV	221862	.	C	T	570	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=15.83;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,34:36:63:603,63,0
chrXV	221900	.	T	C	626	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=16.92;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:72:659,72,0
chrXV	221990	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.24;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1311,135,0
chrXV	222129	.	G	A	875	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=18.23;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:908,96,0
chrXV	222143	.	C	T	931	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=17.90;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:964,99,0
chrXV	222561	.	T	C	1622	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=22.85;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1655,180,0
chrXV	222740	.	G	A	2398	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=24.98;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2431,255,0
chrXV	222860	.	C	T	2257	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=25.65;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2290,243,0
chrXV	223192	.	A	G	2545	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9826;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=24.01;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2578,279,0
chrXV	223207	.	T	A	2518	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;DP=113;Dels=0.00;FS=9.633;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=-0.054;QD=22.28;ReadPosRankSum=2.793;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:3,110:113:99:2551,267,0
chrXV	223438	.	C	T	938	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=9.3710;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=16.46;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:971,105,0
chrXV	223578	.	C	T	2074	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.54;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2107,231,0
chrXV	223663	.	A	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.93;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1687,186,0
chrXV	223729	.	C	T	1348	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.74;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1381,147,0
chrXV	223828	.	C	T	1045	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.23;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1078,114,0
chrXV	224217	.	C	T	668	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=29.8388;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=18.56;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:78:701,78,0
chrXV	225923	.	T	C	971	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=17.34;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1004,111,0
chrXV	226333	.	T	G	1316	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=22.69;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1349,147,0
chrXV	226585	.	A	G	913	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.782;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;MQRankSum=-0.260;QD=17.90;ReadPosRankSum=2.582;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:3,48:51:99:946,102,0
chrXV	226701	.	A	G	478	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.13;MQ0=0;QD=19.92;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,24:24:54:511,54,0
chrXV	226710	.	G	A	597	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.09;MQ0=0;QD=21.32;SB=-3.101e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:66:630,66,0
chrXV	226746	.	A	T	655	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.16;MQ0=0;QD=18.71;SB=-2.401e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:78:688,78,0
chrXV	226751	.	C	T	765	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.81;MQ0=0;QD=20.68;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:84:798,84,0
chrXV	226773	.	C	T	736	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.865;DP=73;Dels=0.00;FS=188.424;HaplotypeScore=61.4843;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;MQRankSum=0.637;QD=10.08;ReadPosRankSum=-7.233;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:31,42:73:87:769,87,0
chrXV	226802	.	A	G	42.97	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.38;MQ0=0;QD=1.59;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,27:27:9:75,9,0
chrXV	226812	.	C	G	40.97	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.68;MQ0=0;QD=1.86;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,22:22:9:73,9,0
chrXV	226817	.	G	C	44.97	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.76;MQ0=0;QD=2.14;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,21:21:9:77,9,0
chrXV	226851	.	C	T	120.13	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=9.24;SB=-1.410e-01	GT:AD:DP:GQ:PL	1/1:0,13:13:18:153,18,0
chrXV	226881	.	T	C	39.97	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=5.71;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:0,7:7:9:72,9,0
chrXV	226884	.	T	C	37.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.46;MQ0=0;MQRankSum=0.747;QD=4.75;ReadPosRankSum=0.747;SB=-9.134e-01	GT:AD:DP:GQ:PL	1/1:1,7:8:9:70,9,0
chrXV	226910	.	T	C	127.06	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.42;MQ0=0;QD=12.71;SB=-6.629e-02	GT:AD:DP:GQ:PL	1/1:0,10:10:21:160,21,0
chrXV	226932	.	C	T	127.06	filter	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.36;MQ0=0;QD=18.15;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,7:7:21:160,21,0
chrXV	226958	.	T	C	174.01	SnpCluster	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.69;MQ0=0;QD=19.33;SB=-6.989e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:27:207,27,0
chrXV	226961	.	G	A	205	SnpCluster	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=0;QD=18.64;SB=-1.279e+02	GT:AD:DP:GQ:PL	1/1:0,11:11:30:238,30,0
chrXV	226965	.	C	A	206	SnpCluster	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.22;MQ0=0;QD=18.73;SB=-1.309e+02	GT:AD:DP:GQ:PL	1/1:0,11:11:30:239,30,0
chrXV	227003	.	T	G	265	PASS	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=18.93;SB=-9.500e+01	GT:AD:DP:GQ:PL	1/1:0,14:14:36:298,36,0
chrXV	227066	.	A	T	857	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=30.67;MQ0=0;QD=22.55;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:96:890,96,0
chrXV	227150	.	A	C	66.51	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.52;MQ0=0;QD=1.17;SB=-1.565e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:12:99,12,0
chrXV	227158	.	C	G	135.13	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=33.84;MQ0=0;QD=2.22;SB=-1.331e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:18:168,18,0
chrXV	227250	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=22.70;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1236,132,0
chrXV	227264	.	G	A	953	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=18.69;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:986,105,0
chrXV	227372	.	A	T	1711	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=17.11;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1744,186,0
chrXV	227388	.	G	C	1980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=102;Dels=0.01;FS=0.000;HaplotypeScore=5.2590;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=-1.524;QD=19.41;ReadPosRankSum=1.074;SB=-2.120e+02	GT:AD:DP:GQ:PL	1/1:1,99:101:99:2013,228,0
chrXV	227478	.	T	C	2107	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=22.90;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2140,228,0
chrXV	227824	.	G	A	2050	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=9.7113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.92;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,94:98:99:2083,213,0
chrXV	228001	.	A	C	1356	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.86;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1389,150,0
chrXV	229235	.	A	G	2147	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.17;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2180,237,0
chrXV	229291	.	C	A	2255	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.61;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2288,243,0
chrXV	229366	.	T	C	2560	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=127;Dels=0.00;FS=4.429;HaplotypeScore=9.0035;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=0.540;QD=20.16;ReadPosRankSum=1.704;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:1,121:127:99:2593,285,0
chrXV	229462	.	T	C	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;DP=98;Dels=0.00;FS=7.330;HaplotypeScore=10.4575;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.180;QD=18.76;ReadPosRankSum=2.399;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:2,95:98:99:1871,216,0
chrXV	229649	.	G	A	1888	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=19.87;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1921,210,0
chrXV	229674	.	G	A	2238	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.63;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2271,240,0
chrXV	229744	.	C	T	1821	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.77;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1854,201,0
chrXV	229828	.	T	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.66;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1350,147,0
chrXV	229900	.	T	C	2563	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=125;Dels=0.00;FS=3.452;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.090;QD=20.50;ReadPosRankSum=1.704;SB=-1.303e+03	GT:AD:DP:GQ:PL	1/1:1,124:125:99:2596,282,0
chrXV	230045	.	C	T	572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=79;Dels=0.00;FS=3.813;HaplotypeScore=44.3062;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;MQRankSum=1.372;QD=7.24;ReadPosRankSum=1.507;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:69:605,69,0
chrXV	230047	.	A	T	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.359;DP=79;Dels=0.00;FS=81.912;HaplotypeScore=43.3328;MLEAC=1;MLEAF=0.500;MQ=47.82;MQ0=0;MQRankSum=-3.886;QD=0.14;ReadPosRankSum=-0.777;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:51,28:79:41:41,0,203
chrXV	230066	.	C	T	598	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=11.07;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:69:631,69,0
chrXV	230105	.	G	T	722	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=5.6310;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=16.41;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:755,81,0
chrXV	230282	.	C	T	3108	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=23.91;SB=-1.588e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:3141,330,0
chrXV	230379	.	A	G	2320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.368;DP=101;Dels=0.00;FS=18.744;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;MQRankSum=-0.484;QD=22.97;ReadPosRankSum=3.368;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:4,96:101:99:2353,258,0
chrXV	230491	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.32;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1573,162,0
chrXV	230592	.	T	A	2192	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.8157;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.68;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2225,234,0
chrXV	230614	.	G	A	2264	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=16.65;SB=-1.410e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2297,243,0
chrXV	230706	.	G	A	2340	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=9.3129;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=22.72;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2373,252,0
chrXV	230792	.	A	T	2606	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.8139;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.27;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2639,282,0
chrXV	230852	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.1374;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.47;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1589,174,0
chrXV	231024	.	T	C	1873	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=16.01;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,115:117:99:1906,216,0
chrXV	231041	.	G	A	2203	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.67;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2236,240,0
chrXV	231091	.	A	T	2241	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.99;SB=-1.477e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2274,246,0
chrXV	231101	.	A	G	2408	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=17.97;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:0,133:134:99:2441,276,0
chrXV	231231	.	A	G	1951	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.51;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1984,216,0
chrXV	231304	.	A	G	3027	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=13.2752;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-1.132;QD=19.66;ReadPosRankSum=2.385;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:2,151:154:99:3060,342,0
chrXV	231541	.	C	T	2080	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.37;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2113,225,0
chrXV	232193	.	A	G	854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.511;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.511;QD=17.43;ReadPosRankSum=1.659;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:96:887,96,0
chrXV	232710	.	A	G	1277	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.4259;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.27;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1310,144,0
chrXV	232797	.	C	T	2013	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=25.16;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2046,216,0
chrXV	233424	.	A	G	1705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.942;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;MQRankSum=0.355;QD=21.86;ReadPosRankSum=1.688;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1738,189,0
chrXV	233436	.	C	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.86;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1483,165,0
chrXV	233496	.	C	T	975	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=20.74;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1008,108,0
chrXV	234005	.	C	T	829	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=19.28;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:862,93,0
chrXV	234020	.	T	C	890	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.16;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:923,102,0
chrXV	234113	.	T	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=54.0409;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=18.05;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1116,117,0
chrXV	234204	.	A	T	1782	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.73;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1815,198,0
chrXV	234283	.	A	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.39;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1834,204,0
chrXV	234491	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.162;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=-0.325;QD=20.28;ReadPosRankSum=1.137;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1351,128,0
chrXV	234731	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.84;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1312,147,0
chrXV	234932	.	A	T	1536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.442;DP=79;Dels=0.00;FS=11.444;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;MQRankSum=0.338;QD=19.44;ReadPosRankSum=2.754;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1569,171,0
chrXV	235143	.	C	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.72;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1096,120,0
chrXV	235233	.	A	C	1308	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.82;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1341,147,0
chrXV	235374	.	A	G	1610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=79;Dels=0.00;FS=8.064;HaplotypeScore=39.1393;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;MQRankSum=0.936;QD=20.38;ReadPosRankSum=2.373;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1643,180,0
chrXV	235950	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=3.680;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;MQRankSum=-1.237;QD=16.54;ReadPosRankSum=1.670;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:976,108,0
chrXV	235959	.	C	T	961	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.5998;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=16.57;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:994,108,0
chrXV	236253	.	A	G	449	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=14.48;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:51:482,51,0
chrXV	236301	.	A	G	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.00;MQ0=0;QD=1.71;SB=-8.574e+01	GT:AD:DP:GQ:PL	1/1:0,11:11:6:50,6,0
chrXV	236362	.	G	A	642	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=14.59;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:72:675,72,0
chrXV	236985	.	A	G	733	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=63;Dels=0.00;FS=1.620;HaplotypeScore=63.4504;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;MQRankSum=-0.726;QD=11.63;ReadPosRankSum=2.012;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:7,56:63:87:766,87,0
chrXV	237006	.	G	A	490	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.750;DP=67;Dels=0.00;FS=5.557;HaplotypeScore=3.9011;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;MQRankSum=0.532;QD=7.31;ReadPosRankSum=0.087;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:8,59:67:54:523,54,0
chrXV	237471	.	A	C	1274	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.55;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1307,147,0
chrXV	237769	.	G	C	1046	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.02;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1079,117,0
chrXV	238194	.	A	T	487	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=74.3207;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;QD=18.04;SB=-6.553e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:54:520,54,0
chrXV	238432	.	C	T	1489	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=26.59;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1522,159,0
chrXV	238504	.	C	A	299	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=11.96;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:36:332,36,0
chrXV	238507	.	T	A	253	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=10.12;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:33:286,33,0
chrXV	238554	.	T	C	697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;MQRankSum=0.363;QD=16.21;ReadPosRankSum=1.652;SB=-6.101e+01	GT:AD:DP:GQ:PL	1/1:1,42:43:81:730,81,0
chrXV	238640	.	A	G	1003	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.88;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1036,117,0
chrXV	238753	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.68;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1312,144,0
chrXV	238924	.	A	C	1673	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=24.60;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1706,186,0
chrXV	238980	.	A	C	2116	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=20.75;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,100:102:99:2149,234,0
chrXV	239053	.	C	T	2277	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=24.48;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2310,243,0
chrXV	239353	.	C	T	2071	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.91;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2104,225,0
chrXV	239359	.	C	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=19.08;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2017,222,0
chrXV	239974	.	C	G	1934	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=22.75;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1967,210,0
chrXV	240094	.	G	A	2596	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.00;SB=-1.464e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2629,279,0
chrXV	240177	.	C	T	2607	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.37;SB=-1.567e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2640,279,0
chrXV	240194	.	T	A	2480	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;MQRankSum=-0.294;QD=21.02;ReadPosRankSum=1.703;SB=-1.606e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2513,267,0
chrXV	240239	.	T	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=18.00;SB=-1.368e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1851,195,0
chrXV	240538	.	C	T	1962	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.9038;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.81;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1995,210,0
chrXV	240750	.	A	G	2202	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=6.944;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.258;QD=23.43;ReadPosRankSum=1.695;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2235,252,0
chrXV	241147	.	A	C	1958	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.25;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1991,216,0
chrXV	241190	.	A	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=21.91;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1304,141,0
chrXV	241207	.	T	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.23;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1072,117,0
chrXV	241225	.	G	A	812	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=17.65;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:845,96,0
chrXV	241259	.	A	G	595	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=16.08;SB=-3.550e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:69:628,69,0
chrXV	241369	.	T	C	32.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.583;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=0.272;QD=0.77;ReadPosRankSum=3.107;SB=-2.795e+01	GT:AD:DP:GQ:PL	1/1:5,37:43:9:65,9,0
chrXV	241371	.	C	T	23.16	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.287;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=0.299;QD=0.56;ReadPosRankSum=3.486;SB=-3.115e+01	GT:AD:DP:GQ:PL	0/1:5,36:41:12:53,0,12
chrXV	241442	.	C	G	744	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.67;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:84:777,84,0
chrXV	241632	.	A	G	1483	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.96;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1516,162,0
chrXV	241704	.	A	G	490	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.7074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.79;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:57:523,57,0
chrXV	241848	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.59;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1000,114,0
chrXV	242267	.	T	C	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;DP=88;Dels=0.00;FS=2.742;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.854;QD=20.58;ReadPosRankSum=2.310;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1844,204,0
chrXV	242379	.	G	A	2887	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.38;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:0,128:129:99:2920,306,0
chrXV	242446	.	A	G	2308	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.56;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2341,261,0
chrXV	242488	.	T	C	1706	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.07;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1739,189,0
chrXV	242641	.	C	G	767	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.32;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,46:47:87:800,87,0
chrXV	242786	.	C	T	923	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.02;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=15.91;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:956,102,0
chrXV	243128	.	T	C	159.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.264;DP=28;Dels=0.00;FS=6.066;HaplotypeScore=19.4039;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=1.942;QD=5.68;ReadPosRankSum=-3.524;SB=-1.606e+01	GT:AD:DP:GQ:PL	1/1:18,10:28:21:192,21,0
chrXV	243211	.	A	G	707	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.57;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:81:740,81,0
chrXV	243303	.	T	C	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=-0.509;QD=18.60;ReadPosRankSum=1.681;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1298,144,0
chrXV	243335	.	C	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=7.2219;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.80;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1401,150,0
chrXV	243435	.	C	T	1123	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.60;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1156,123,0
chrXV	243462	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=0.144;QD=20.75;ReadPosRankSum=1.660;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1029,111,0
chrXV	243778	.	C	A	1547	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.34;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1580,174,0
chrXV	244324	.	T	A	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=58;Dels=0.00;FS=2.788;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.239;QD=18.17;ReadPosRankSum=2.277;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1087,123,0
chrXV	244393	.	C	T	1307	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=22.53;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1340,138,0
chrXV	244783	.	G	A	1042	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=19.66;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1075,114,0
chrXV	244803	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=18.61;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1224,138,0
chrXV	245153	.	T	C	1310	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.79;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1343,147,0
chrXV	245302	.	A	G	3118	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.3501;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.76;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3151,342,0
chrXV	247379	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.09;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1005,108,0
chrXV	247462	.	A	G	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=4.102;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.476;QD=21.33;ReadPosRankSum=1.668;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1206,132,0
chrXV	247746	.	G	A	1267	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1300,138,0
chrXV	247923	.	T	C	1960	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.13;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1993,219,0
chrXV	248365	.	C	G	3020	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0216;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.35;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,121:124:99:3053,336,0
chrXV	248980	.	C	T	1051	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2409;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=15.01;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1084,114,0
chrXV	248992	.	T	C	959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=3.140;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;MQRankSum=-1.630;QD=14.10;ReadPosRankSum=1.681;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:92:992,92,0
chrXV	249246	.	C	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=18.98;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1134,120,0
chrXV	249250	.	C	T	1098	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.61;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1131,117,0
chrXV	249391	.	A	C	1259	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=17.25;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1292,144,0
chrXV	249478	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.62;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1784,192,0
chrXV	249516	.	A	G	1734	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.52;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1767,192,0
chrXV	249588	.	C	T	1256	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=22.43;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1289,141,0
chrXV	249980	.	C	T	1845	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=23.06;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1878,198,0
chrXV	250527	.	C	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.89;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1784,186,0
chrXV	250539	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.56;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1657,180,0
chrXV	251243	.	G	A	2334	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:2367,261,0
chrXV	251789	.	C	T	1714	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6644;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.81;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1747,189,0
chrXV	252485	.	A	G	1078	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.84;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1111,126,0
chrXV	253017	.	A	T	538	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=14.94;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:63:571,63,0
chrXV	253966	.	A	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=17.41;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1269,138,0
chrXV	254007	.	G	A	930	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.76;MQ0=0;QD=15.50;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:963,102,0
chrXV	254016	.	C	T	1065	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=17.75;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1098,117,0
chrXV	254203	.	T	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.82;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1619,177,0
chrXV	254256	.	A	G	2032	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=23.36;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2065,231,0
chrXV	254614	.	C	T	630	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=11.25;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:69:663,69,0
chrXV	254654	.	C	T	427	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=7.6567;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=10.95;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,34:38:48:460,48,0
chrXV	254668	.	A	G	525	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;MQRankSum=-1.134;QD=15.44;ReadPosRankSum=2.159;SB=-6.528e-03	GT:AD:DP:GQ:PL	1/1:2,32:34:60:558,60,0
chrXV	254679	.	C	T	555	filter	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=15.00;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,37:37:69:588,69,0
chrXV	254857	.	C	G	738	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.06;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,29:32:84:771,84,0
chrXV	254962	.	T	C	408	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;QD=19.43;SB=-6.653e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:48:441,48,0
chrXV	254966	.	C	T	400	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.39;SB=-6.785e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:45:433,45,0
chrXV	254975	.	A	T	357	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.01;MQ0=0;QD=13.73;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:42:390,42,0
chrXV	255018	.	T	C	430	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=12.65;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,34:34:51:463,51,0
chrXV	255031	.	T	C	491	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;QD=16.37;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:60:524,60,0
chrXV	255070	.	A	G	656	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=18.22;SB=-5.201e+01	GT:AD:DP:GQ:PL	1/1:0,36:36:75:689,75,0
chrXV	255163	.	G	A	1137	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.87;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1170,126,0
chrXV	255181	.	A	G	1100	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=20.00;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1133,126,0
chrXV	255268	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.79;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1515,171,0
chrXV	256322	.	A	C	1135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;MQRankSum=0.933;QD=17.46;ReadPosRankSum=1.679;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1168,132,0
chrXV	256343	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;MQRankSum=0.451;QD=16.84;ReadPosRankSum=1.685;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1279,144,0
chrXV	256395	.	C	T	2309	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.80;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2342,249,0
chrXV	256446	.	C	T	2258	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.63;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2291,249,0
chrXV	256457	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.38;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2029,225,0
chrXV	256963	.	G	A	2222	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.5890;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.49;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2255,237,0
chrXV	257252	.	A	G	840	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=20.49;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:96:873,96,0
chrXV	257356	.	C	T	1486	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=18.12;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1519,162,0
chrXV	257374	.	T	C	1443	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=16.78;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1476,162,0
chrXV	257545	.	G	A	1093	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=16.31;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1126,117,0
chrXV	257554	.	C	T	944	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=14.09;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:977,102,0
chrXV	257615	.	A	G	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=58;Dels=0.00;FS=5.518;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;MQRankSum=-0.274;QD=17.74;ReadPosRankSum=1.672;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1062,114,0
chrXV	257719	.	T	C	1471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.917;QD=21.63;ReadPosRankSum=1.681;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1504,168,0
chrXV	257986	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.63;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1337,147,0
chrXV	258043	.	C	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.02;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1042,114,0
chrXV	258539	.	G	C	1659	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1692,189,0
chrXV	259240	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.8611;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=15.55;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:1666,186,0
chrXV	259315	.	C	T	1993	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.66;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2026,219,0
chrXV	259644	.	T	G	2863	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=21.85;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2896,324,0
chrXV	259706	.	A	G	1971	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=3.821;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;MQRankSum=-1.474;QD=20.97;ReadPosRankSum=1.695;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2004,222,0
chrXV	259707	.	A	G	1965	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=21.13;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1998,219,0
chrXV	259721	.	C	T	1856	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=19.74;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1889,201,0
chrXV	259779	.	G	A	846	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=14.84;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:93:879,93,0
chrXV	259780	.	G	A	880	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=15.44;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:96:913,96,0
chrXV	259797	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=13.89;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1033,114,0
chrXV	259967	.	T	C	2627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-1.041;QD=22.45;ReadPosRankSum=1.041;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:2,115:117:99:2660,272,0
chrXV	260138	.	A	G	1230	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=17.57;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1263,135,0
chrXV	260153	.	T	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.84;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1283,141,0
chrXV	260285	.	T	C	2093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=4.318;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-0.520;QD=20.93;ReadPosRankSum=1.697;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2126,243,0
chrXV	260314	.	G	A	2160	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.74;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2193,231,0
chrXV	260340	.	A	G	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=0.423;QD=19.41;ReadPosRankSum=1.694;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1780,198,0
chrXV	260366	.	G	A	1942	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.23;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1975,210,0
chrXV	260399	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=20.84;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1679,174,0
chrXV	260576	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.372;QD=21.97;ReadPosRankSum=1.687;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,76:80:99:1791,195,0
chrXV	260613	.	T	G	1692	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.56;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1725,192,0
chrXV	260759	.	A	G	1826	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.167;DP=87;Dels=0.00;FS=2.709;HaplotypeScore=8.1722;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;MQRankSum=1.855;QD=20.99;ReadPosRankSum=2.393;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1859,201,0
chrXV	260837	.	A	G	1528	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.15;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1561,174,0
chrXV	260864	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=4.017;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=-1.135;QD=23.08;ReadPosRankSum=1.613;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1395,153,0
chrXV	260906	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.0216;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=18.34;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1335,150,0
chrXV	261263	.	T	C	1826	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.23;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1859,207,0
chrXV	261556	.	C	A	2014	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3442;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.43;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2047,219,0
chrXV	261583	.	G	A	1645	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=18.91;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1678,180,0
chrXV	261665	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.25;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1542,168,0
chrXV	261696	.	T	C	1943	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.83;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1976,213,0
chrXV	261914	.	C	T	3057	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.88;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,126:128:99:3090,333,0
chrXV	262103	.	G	T	2966	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.49;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2999,327,0
chrXV	262692	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1668,177,0
chrXV	262807	.	C	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1771;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.48;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1923,201,0
chrXV	262868	.	T	C	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.091;QD=21.43;ReadPosRankSum=1.689;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1790,201,0
chrXV	263183	.	T	C	1649	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.36;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1682,183,0
chrXV	263431	.	T	C	2242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.839;QD=23.11;ReadPosRankSum=1.661;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2275,255,0
chrXV	263881	.	A	T	2739	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2772,300,0
chrXV	264752	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=11.5847;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.99;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1476,162,0
chrXV	264976	.	G	A	2365	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=25.43;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2398,246,0
chrXV	265232	.	T	A	2063	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5566;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.92;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2096,225,0
chrXV	265818	.	A	G	2012	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=10.5702;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=19.53;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2045,228,0
chrXV	265983	.	A	G	1932	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.92;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1965,219,0
chrXV	266234	.	T	C	2121	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=14.0661;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=1.594;QD=20.39;ReadPosRankSum=0.485;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:1,99:104:99:2154,240,0
chrXV	266279	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.32;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1504,162,0
chrXV	266609	.	A	G	848	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=18.43;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:96:881,96,0
chrXV	266897	.	G	A	1006	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=21.87;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1039,111,0
chrXV	266963	.	C	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=18.03;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1295,138,0
chrXV	266966	.	C	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=18.99;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1305,141,0
chrXV	267104	.	A	G	1543	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.53;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1576,171,0
chrXV	267165	.	C	T	1405	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.95;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1438,150,0
chrXV	267363	.	C	T	1176	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=18.09;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1209,129,0
chrXV	267365	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=17.62;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1196,135,0
chrXV	267577	.	G	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.92;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1677,177,0
chrXV	267756	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.73;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1033,111,0
chrXV	267906	.	G	C	875	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=18.62;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:908,102,0
chrXV	267912	.	T	C	998	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=19.96;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1031,111,0
chrXV	267950	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=16.31;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:84:767,84,0
chrXV	268222	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=66;Dels=0.00;FS=8.772;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-0.969;QD=21.06;ReadPosRankSum=2.298;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:2,63:66:99:1423,159,0
chrXV	269347	.	C	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=19.87;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1801,204,0
chrXV	269416	.	T	A	731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.420;DP=71;Dels=0.00;FS=4.115;HaplotypeScore=14.2664;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;MQRankSum=4.383;QD=10.30;ReadPosRankSum=2.305;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:16,55:71:61:764,61,0
chrXV	269454	.	A	C	62.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DP=33;Dels=0.00;FS=1.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=0;MQRankSum=-2.082;QD=1.88;ReadPosRankSum=-3.294;SB=-6.201e+01	GT:AD:DP:GQ:PL	0/1:24,9:33:63:92,0,63
chrXV	269455	.	A	T	64.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;DP=33;Dels=0.00;FS=1.864;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=0;MQRankSum=-0.748;QD=1.94;ReadPosRankSum=-3.294;SB=-6.701e+01	GT:AD:DP:GQ:PL	0/1:24,9:33:62:94,0,62
chrXV	269458	.	A	G,T	135.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=38.04;MQ0=0;QD=3.97;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/2:0,25,9:34:82:195,102,90,94,0,82
chrXV	269464	.	C	T	31.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=37.18;MQ0=0;MQRankSum=-1.407;QD=0.94;ReadPosRankSum=-4.222;SB=-3.701e+01	GT:AD:DP:GQ:PL	0/1:25,8:33:61:61,0,89
chrXV	269468	.	A	G	103.26	SnpCluster	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=3.82;SB=-1.433e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:15:136,15,0
chrXV	269473	.	A	T	134.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=4.79;SB=-1.701e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:18:167,18,0
chrXV	269591	.	A	G	612	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.367;QD=12.75;ReadPosRankSum=2.348;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:2,46:48:72:645,72,0
chrXV	269647	.	C	T	864	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=13.71;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,63:63:99:897,108,0
chrXV	269686	.	T	C	1008	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=15.51;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1041,120,0
chrXV	269696	.	T	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.77;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1123,120,0
chrXV	269941	.	C	T	647	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=23.96;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:72:680,72,0
chrXV	270070	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.24;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:99:954,105,0
chrXV	270103	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.96;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1228,135,0
chrXV	270281	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.46;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1255,132,0
chrXV	270435	.	T	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.25;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1223,135,0
chrXV	270526	.	C	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.25;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1167,126,0
chrXV	270687	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.08;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1298,144,0
chrXV	270735	.	T	C	1577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.6651;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.322;QD=20.48;ReadPosRankSum=1.687;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1610,177,0
chrXV	270906	.	C	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=24.87;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1948,201,0
chrXV	271041	.	C	T	1350	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.720;DP=84;Dels=0.00;FS=2.610;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=1.378;QD=16.07;ReadPosRankSum=2.769;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:3,80:84:99:1383,153,0
chrXV	271045	.	T	C	1341	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.05;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=16.35;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1374,153,0
chrXV	271047	.	A	G	1324	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=4.241;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;MQRankSum=0.427;QD=17.19;ReadPosRankSum=1.687;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1357,153,0
chrXV	271314	.	C	T	1434	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.07;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1467,162,0
chrXV	271365	.	T	A	1702	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=19.79;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1735,180,0
chrXV	271388	.	C	T	1861	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=20.23;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1894,201,0
chrXV	271727	.	G	A	1135	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.42;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1168,123,0
chrXV	271758	.	T	C	1123	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=20.42;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1156,129,0
chrXV	271822	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.4551;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;QD=18.85;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,71:75:99:1447,159,0
chrXV	271895	.	G	C	1476	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=23.43;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1509,168,0
chrXV	271964	.	T	C	14.91	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.119;DP=58;Dels=0.02;FS=19.740;HaplotypeScore=66.0732;MLEAC=2;MLEAF=1.00;MQ=37.45;MQ0=0;MQRankSum=1.337;QD=0.26;ReadPosRankSum=-6.119;SB=-5.976e+01	GT:AD:DP:GQ:PL	1/1:32,21:57:6:46,6,0
chrXV	271974	.	T	C	616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=27.3698;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;MQRankSum=-1.617;QD=9.94;ReadPosRankSum=1.559;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:2,59:62:75:649,75,0
chrXV	272022	.	A	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.10;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1282,138,0
chrXV	272126	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.07;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1515,159,0
chrXV	272186	.	G	A	1381	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.71;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1414,153,0
chrXV	272201	.	G	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=18.79;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1405,150,0
chrXV	272231	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;QD=17.81;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1137,123,0
chrXV	272255	.	G	C	816	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.86;MQ0=0;QD=14.84;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:93:849,93,0
chrXV	272275	.	T	C	925	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=15.95;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:958,105,0
chrXV	272573	.	A	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.38;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1480,165,0
chrXV	272726	.	A	G	844	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.431;QD=18.35;ReadPosRankSum=1.657;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:96:877,96,0
chrXV	273137	.	C	T	1162	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1195,126,0
chrXV	273332	.	C	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.59;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1544,162,0
chrXV	273347	.	C	T	1525	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.43;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1558,165,0
chrXV	273461	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=24.59;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1484,156,0
chrXV	273775	.	G	C	1637	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.9255;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.99;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1670,183,0
chrXV	273798	.	T	C	1663	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3055;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=20.53;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1696,186,0
chrXV	273908	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1756;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=20.89;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1412,156,0
chrXV	274033	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.32;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1618,171,0
chrXV	274354	.	A	C	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.873;DP=87;Dels=0.00;FS=5.880;HaplotypeScore=7.3741;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;MQRankSum=-0.407;QD=16.67;ReadPosRankSum=2.780;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:3,84:87:99:1483,140,0
chrXV	274546	.	G	T	1475	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.07;MQ0=0;QD=18.44;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1508,159,0
chrXV	274550	.	T	G	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;MQRankSum=-1.304;QD=16.76;ReadPosRankSum=1.689;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1407,156,0
chrXV	274565	.	A	G	1011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;DP=74;Dels=0.00;FS=13.419;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;MQRankSum=-1.853;QD=13.66;ReadPosRankSum=3.335;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:4,70:74:99:1044,120,0
chrXV	274586	.	A	G	768	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.247;DP=75;Dels=0.00;FS=8.111;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.84;MQ0=0;MQRankSum=-0.152;QD=10.24;ReadPosRankSum=1.233;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:87:801,87,0
chrXV	274592	.	T	C	702	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=10.97;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:84:735,84,0
chrXV	274593	.	A	G	684	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=10.69;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:81:717,81,0
chrXV	274608	.	C	T	831	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2703;MLEAC=2;MLEAF=1.00;MQ=37.31;MQ0=0;QD=11.23;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:96:864,96,0
chrXV	274651	.	G	C	1169	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=17.71;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1202,129,0
chrXV	274657	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=18.43;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1286,138,0
chrXV	274962	.	C	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=23.34;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2157,225,0
chrXV	275073	.	T	C	1714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;MQRankSum=-1.732;QD=24.49;ReadPosRankSum=1.632;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1747,186,0
chrXV	275863	.	A	T	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=69;Dels=0.00;FS=9.810;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=0.608;QD=23.58;ReadPosRankSum=2.266;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1660,174,0
chrXV	276153	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=76;Dels=0.00;FS=4.068;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.281;QD=19.55;ReadPosRankSum=1.685;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,73:76:99:1519,174,0
chrXV	276436	.	T	C	1288	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=23.00;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1321,141,0
chrXV	276471	.	A	G	1240	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.38;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1273,141,0
chrXV	276505	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3249;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.77;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1736,192,0
chrXV	276679	.	T	C	3226.07	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=24.44;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3259,360,0
chrXV	276746	.	A	G	2262	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=5.260;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.663;QD=24.06;ReadPosRankSum=1.622;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2295,246,0
chrXV	276774	.	C	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.31;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1711,189,0
chrXV	277027	.	T	C	1880	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.2581;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=17.41;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1913,213,0
chrXV	277036	.	C	T	1916	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.38;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1949,207,0
chrXV	277085	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=20.35;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1376,144,0
chrXV	277467	.	C	G	707	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=19.64;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,34:36:81:740,81,0
chrXV	277571	.	A	G	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.3937;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.286;QD=19.64;ReadPosRankSum=1.665;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,102:104:99:2076,231,0
chrXV	277667	.	C	T	1158	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;QD=17.28;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1191,126,0
chrXV	277668	.	A	T	1182	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=4.111;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.75;MQ0=0;MQRankSum=-1.008;QD=17.64;ReadPosRankSum=1.629;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1215,126,0
chrXV	277673	.	A	G	996	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.327;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;MQRankSum=-1.199;QD=15.32;ReadPosRankSum=1.679;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1029,114,0
chrXV	277693	.	G	C	852	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=12.35;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:96:885,96,0
chrXV	277699	.	C	A	891	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.30;MQ0=0;QD=12.04;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:924,99,0
chrXV	277705	.	T	C	844	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.45;MQ0=0;QD=11.56;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:96:877,96,0
chrXV	277732	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.43;MQ0=0;QD=13.45;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:961,102,0
chrXV	277819	.	T	A	1731	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=21.37;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1764,192,0
chrXV	277840	.	G	C	1813	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=20.84;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1846,201,0
chrXV	277905	.	T	C	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.123;DP=83;Dels=0.00;FS=2.986;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;MQRankSum=0.134;QD=17.88;ReadPosRankSum=1.945;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1517,165,0
chrXV	277941	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.31;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1844,195,0
chrXV	278142	.	G	A	1683	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=21.58;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1716,186,0
chrXV	278259	.	G	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=19.80;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1993,216,0
chrXV	278268	.	G	A	2121	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=19.46;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2154,234,0
chrXV	278358	.	A	G	1904	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=0.790;QD=18.31;ReadPosRankSum=1.698;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:1,102:104:99:1937,219,0
chrXV	278901	.	A	G	1535	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.37;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1568,174,0
chrXV	279324	.	T	C	1299	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.65;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1332,147,0
chrXV	279501	.	A	G	1721	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.26;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1754,192,0
chrXV	279807	.	T	C	2001	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1611;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;QD=20.01;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2034,219,0
chrXV	279819	.	G	A	1808	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;QD=18.83;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:0,93:96:99:1841,192,0
chrXV	279839	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=102;Dels=0.00;FS=3.958;HaplotypeScore=7.6800;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=0.951;QD=16.90;ReadPosRankSum=0.102;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,101:102:99:1757,189,0
chrXV	279879	.	G	A	2037	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.02;FS=0.000;HaplotypeScore=7.5550;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.22;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2070,216,0
chrXV	279942	.	T	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=24.57;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1851,195,0
chrXV	280005	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=22.05;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1400,153,0
chrXV	280156	.	C	T	2564	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=21.19;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2597,276,0
chrXV	280157	.	G	T	2625	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=21.17;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2658,282,0
chrXV	280347	.	G	A	931	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=16.05;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:964,108,0
chrXV	280395	.	G	A	1023	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=18.60;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1056,114,0
chrXV	280401	.	G	A	990	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=17.07;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1023,108,0
chrXV	280497	.	A	G	1583	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=18.20;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1616,177,0
chrXV	280524	.	G	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=18.00;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1491,159,0
chrXV	280587	.	C	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.1868;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=19.59;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1287,141,0
chrXV	280789	.	C	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.95;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1306,141,0
chrXV	281299	.	C	T	1244	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=20.73;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1277,135,0
chrXV	281328	.	G	A	984	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.29;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1017,108,0
chrXV	281493	.	G	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.86;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1639,180,0
chrXV	281671	.	C	G	2073	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=21.15;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2106,237,0
chrXV	281680	.	C	T	2151	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.30;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2184,225,0
chrXV	281784	.	G	C	1372	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.78;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1405,153,0
chrXV	281820	.	G	C	1352	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=19.59;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1385,150,0
chrXV	281945	.	A	C	3315.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=8.3765;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.618;QD=23.18;ReadPosRankSum=1.708;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,142:143:99:3315,366,0
chrXV	282101	.	A	G	2219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=89;Dels=0.00;FS=4.924;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=-0.538;QD=24.93;ReadPosRankSum=1.692;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,86:89:99:2252,243,0
chrXV	282407	.	G	A	2968	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.05;SB=-1.377e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3001,330,0
chrXV	283690	.	C	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.93;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1498,156,0
chrXV	283744	.	G	A	1516	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.49;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1549,165,0
chrXV	284494	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.45;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1485,162,0
chrXV	284521	.	A	T	1682	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.51;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1715,186,0
chrXV	284911	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.64;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1263,132,0
chrXV	284917	.	G	A	1062	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=17.41;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1095,117,0
chrXV	284983	.	A	G	1809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=86;Dels=0.00;FS=9.752;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=1.174;QD=21.03;ReadPosRankSum=2.363;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:2,83:86:99:1842,201,0
chrXV	285091	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=21.00;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1671,189,0
chrXV	285349	.	C	T	2155	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.68;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2188,228,0
chrXV	285417	.	G	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1893,195,0
chrXV	285590	.	A	G	1366	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=55.1220;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.77;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1399,147,0
chrXV	285620	.	T	C	1967	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=21.62;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2000,219,0
chrXV	286091	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.45;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1627,171,0
chrXV	286242	.	G	A	886	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.26;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:93:919,93,0
chrXV	286319	.	A	C	1291	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=20.49;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1324,147,0
chrXV	286370	.	T	C	1588	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.89;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1621,174,0
chrXV	286498	.	C	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.38;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1215,129,0
chrXV	286504	.	T	A	1014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;MQRankSum=0.379;QD=15.84;ReadPosRankSum=1.624;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1047,111,0
chrXV	286630	.	G	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9785;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.54;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1088,114,0
chrXV	286903	.	C	T	1115	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=20.65;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1148,120,0
chrXV	286933	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=20.68;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1336,141,0
chrXV	286975	.	C	T	1001	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.30;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1034,108,0
chrXV	287386	.	A	G	1141	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.40;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1174,132,0
chrXV	287762	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.86;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1476,171,0
chrXV	288002	.	C	T	1131	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=16.88;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1164,123,0
chrXV	288113	.	G	A	522	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=15.82;SB=-1.500e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:60:555,60,0
chrXV	288164	.	C	T	727	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.77;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:760,81,0
chrXV	288237	.	A	G	1007	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.89;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:99:1040,114,0
chrXV	289218	.	C	T	1571	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.4052;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.23;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1604,171,0
chrXV	289275	.	T	C	1691	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=21.14;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1724,189,0
chrXV	289578	.	C	T	1698	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9802;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.96;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1731,180,0
chrXV	289651	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=15.9604;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.85;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,80:85:99:1635,171,0
chrXV	289728	.	T	C	1554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;DP=84;Dels=0.00;FS=10.529;HaplotypeScore=5.7643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.169;QD=18.50;ReadPosRankSum=2.844;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:3,81:84:99:1587,174,0
chrXV	289797	.	C	A	1671	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.89;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1704,180,0
chrXV	290259	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=13.01;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1087,120,0
chrXV	290268	.	G	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=4.4769;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=13.69;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1251,132,0
chrXV	290349	.	A	G	1678	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=7.930;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.317;QD=22.68;ReadPosRankSum=2.383;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1711,186,0
chrXV	290681	.	T	C	1557	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=18.76;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1590,177,0
chrXV	290723	.	T	A	2332	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.420;DP=119;Dels=0.00;FS=8.077;HaplotypeScore=5.8333;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.828;QD=19.60;ReadPosRankSum=3.674;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:5,114:119:99:2365,258,0
chrXV	290790	.	C	T	2642	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=23.38;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2675,285,0
chrXV	290809	.	C	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.71;MQ0=0;QD=20.55;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1821,192,0
chrXV	290822	.	T	G	1485	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.6191;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=17.68;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1518,168,0
chrXV	290826	.	C	T	1396	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=50.50;MQ0=0;QD=17.02;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1429,153,0
chrXV	290902	.	A	T	1302	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=19.73;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1335,138,0
chrXV	290908	.	C	T	1240	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.24;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1273,135,0
chrXV	290923	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.00;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1329,144,0
chrXV	291010	.	A	G	1536	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.20;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1569,177,0
chrXV	291061	.	A	G	2375	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=18.55;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2408,270,0
chrXV	291072	.	A	G	2391	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=18.39;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2424,264,0
chrXV	291394	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=19.06;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1234,135,0
chrXV	291397	.	G	A	1193	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=18.35;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1226,132,0
chrXV	291472	.	T	G	1460	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=18.25;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1493,165,0
chrXV	291517	.	G	A	2161	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.56;MQ0=0;QD=21.40;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2194,228,0
chrXV	291532	.	A	G	2075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.62;MQ0=0;MQRankSum=0.093;QD=18.53;ReadPosRankSum=1.670;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2108,234,0
chrXV	291562	.	A	G	1904	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;QD=17.63;SB=-1.325e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1937,216,0
chrXV	291583	.	G	A	2359	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.48;MQ0=0;QD=17.22;SB=-1.619e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2392,252,0
chrXV	291594	.	G	A	2216	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=16.54;SB=-1.531e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:2249,237,0
chrXV	291607	.	A	G	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.667;DP=138;Dels=0.00;FS=12.250;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;MQRankSum=-1.888;QD=14.80;ReadPosRankSum=3.771;SB=-1.614e+03	GT:AD:DP:GQ:PL	1/1:5,132:138:99:2076,231,0
chrXV	291799	.	C	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.99;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1952,207,0
chrXV	291910	.	A	G	2126	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.607;DP=111;Dels=0.00;FS=3.826;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=-0.858;QD=19.15;ReadPosRankSum=1.701;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2159,243,0
chrXV	292096	.	C	A	2398	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.06;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2431,261,0
chrXV	292294	.	C	A	2529	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=20.07;SB=-1.613e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2562,264,0
chrXV	292302	.	A	G	2366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;MQRankSum=0.493;QD=19.24;ReadPosRankSum=1.704;SB=-1.505e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2399,258,0
chrXV	292356	.	T	C	1704	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0593;MLEAC=2;MLEAF=1.00;MQ=55.23;MQ0=0;QD=17.94;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1737,192,0
chrXV	292448	.	A	C	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.535;QD=22.31;ReadPosRankSum=1.689;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1885,207,0
chrXV	292493	.	C	T	2395	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.58;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2428,261,0
chrXV	292642	.	C	G	1435	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.21;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1468,165,0
chrXV	292744	.	A	T	1405	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.525;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.9414;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=1.681;QD=20.36;ReadPosRankSum=1.422;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1438,159,0
chrXV	292883	.	A	G	1674	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=-0.577;QD=19.93;ReadPosRankSum=1.689;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:1,80:84:99:1707,189,0
chrXV	292903	.	G	A	1504	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.18;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1537,171,0
chrXV	292957	.	G	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=21.47;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1407,156,0
chrXV	292966	.	T	C	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;MQRankSum=-1.497;QD=18.65;ReadPosRankSum=1.674;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,58:62:99:1189,129,0
chrXV	293132	.	A	G	1254	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.90;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1287,141,0
chrXV	293200	.	T	C	1422	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=3.680;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.852;QD=21.88;ReadPosRankSum=1.677;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:99:1455,159,0
chrXV	293263	.	G	A	1427	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.68;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1460,153,0
chrXV	293407	.	G	A	1701	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9687;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.68;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1734,189,0
chrXV	294178	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=22.60;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1864,204,0
chrXV	294323	.	C	G	1975	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=21.47;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2008,225,0
chrXV	294330	.	G	A	1918	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=22.30;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1951,201,0
chrXV	294382	.	G	A	892	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=16.22;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:925,105,0
chrXV	294529	.	T	C	1920	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.97;MQ0=0;QD=19.20;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1953,222,0
chrXV	294547	.	C	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=18.62;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,96:99:99:1876,210,0
chrXV	294553	.	C	T	1863	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=19.82;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1896,201,0
chrXV	294636	.	A	G	2106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.5661;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.164;QD=21.94;ReadPosRankSum=1.696;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2139,231,0
chrXV	294683	.	C	T	2026	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.33;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2059,225,0
chrXV	294723	.	T	C	1967	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.38;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2000,219,0
chrXV	294771	.	C	T	1899	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.7790;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.58;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1932,207,0
chrXV	294840	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1929;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=16.57;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1143,126,0
chrXV	294882	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.9306;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-1.417;QD=18.56;ReadPosRankSum=1.575;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1258,141,0
chrXV	295275	.	A	G	651	SnpCluster	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=14.80;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:75:684,75,0
chrXV	295276	.	A	G	672	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;MQRankSum=0.269;QD=14.00;ReadPosRankSum=1.655;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:1,44:48:75:705,75,0
chrXV	295281	.	A	G	701	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=14.31;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,46:49:81:734,81,0
chrXV	296576	.	C	T	2337	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=11.8302;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=21.25;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2370,258,0
chrXV	296786	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.35;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1291,144,0
chrXV	296804	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;MQRankSum=0.147;QD=19.22;ReadPosRankSum=1.674;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1167,123,0
chrXV	296955	.	C	T	2583	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.52;SB=-1.639e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2616,273,0
chrXV	296973	.	C	T	2343	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=18.60;SB=-1.396e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2376,261,0
chrXV	296990	.	A	G	2512	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.61;SB=-1.515e+03	GT:AD:DP:GQ:PL	1/1:0,135:135:99:2545,273,0
chrXV	297046	.	G	A	2463	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.52;SB=-1.598e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2496,255,0
chrXV	297073	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4441;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=19.42;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2111,228,0
chrXV	297107	.	C	T	1979	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.99;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2012,213,0
chrXV	297302	.	C	T	1789	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.10;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1822,198,0
chrXV	297608	.	G	A	1718	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.47;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1751,192,0
chrXV	297818	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.19;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1347,150,0
chrXV	298234	.	A	G	1959	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=24.19;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1992,216,0
chrXV	298577	.	A	G	2168	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.89;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2201,237,0
chrXV	298731	.	A	G	1085	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.60;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1118,123,0
chrXV	298844	.	G	T	1703	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=18.71;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1736,183,0
chrXV	298850	.	T	A	1608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=3.908;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.94;MQ0=0;MQRankSum=-0.171;QD=17.67;ReadPosRankSum=1.656;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1641,180,0
chrXV	299004	.	C	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=19.77;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1140,120,0
chrXV	299136	.	A	G	1139	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.733;QD=21.90;ReadPosRankSum=1.666;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1172,126,0
chrXV	299219	.	C	T	1119	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.52;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1152,120,0
chrXV	299731	.	G	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=17.66;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1163,126,0
chrXV	299765	.	G	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.63;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1330,144,0
chrXV	299792	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=14.16;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1024,114,0
chrXV	299793	.	G	A	1060	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.58;MQ0=0;QD=15.14;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1093,114,0
chrXV	299839	.	A	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=14.45;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1377,153,0
chrXV	299854	.	T	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=43.56;MQ0=0;QD=14.58;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1287,135,0
chrXV	299876	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.29;MQ0=0;QD=14.31;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1435,156,0
chrXV	299879	.	G	A	1417	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;QD=14.61;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1450,156,0
chrXV	299931	.	G	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=14.16;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1378,144,0
chrXV	299935	.	G	A	1376	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=8.2923;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=14.33;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:0,93:95:99:1409,150,0
chrXV	299976	.	A	G	2498	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.07;SB=-1.379e+03	GT:AD:DP:GQ:PL	1/1:0,129:131:99:2531,270,0
chrXV	300004	.	G	A	2331	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=17.79;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2364,258,0
chrXV	300055	.	C	T	2328	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.2243;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.07;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2361,255,0
chrXV	300097	.	A	G	3321.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.255;DP=139;Dels=0.00;FS=6.912;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=1.141;QD=23.89;ReadPosRankSum=2.414;SB=-1.539e+03	GT:AD:DP:GQ:PL	1/1:2,137:139:99:3321,363,0
chrXV	300301	.	G	T	1701	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.1476;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.09;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1734,180,0
chrXV	300670	.	A	G	2091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=1.304;QD=21.34;ReadPosRankSum=1.625;SB=-1.128e+03	GT:AD:DP:GQ:PL	1/1:2,96:98:99:2124,234,0
chrXV	300764	.	G	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=19.44;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1783,195,0
chrXV	300865	.	T	C	3623.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=158;Dels=0.00;FS=0.000;HaplotypeScore=4.2713;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.118;QD=22.93;ReadPosRankSum=2.402;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:3,154:158:99:3623,393,0
chrXV	300887	.	C	T	3747.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=22.04;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:3747,399,0
chrXV	300895	.	T	A	3596.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=2.6023;MLEAC=2;MLEAF=1.00;MQ=52.34;MQ0=0;QD=22.06;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,163:163:99:3596,378,0
chrXV	301044	.	G	C	2106	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=47.58;MQ0=0;QD=22.40;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2139,228,0
chrXV	301075	.	T	G	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.614;DP=88;Dels=0.00;FS=5.643;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.19;MQ0=0;MQRankSum=-1.732;QD=19.17;ReadPosRankSum=1.693;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1720,192,0
chrXV	301083	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=93;Dels=0.00;FS=6.068;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;MQRankSum=0.466;QD=17.94;ReadPosRankSum=1.695;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:1701,186,0
chrXV	301153	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.71;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1203,126,0
chrXV	301308	.	G	A	156.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;DP=73;Dels=0.04;FS=11.440;HaplotypeScore=83.3416;MLEAC=1;MLEAF=0.500;MQ=54.73;MQ0=0;MQRankSum=2.201;QD=2.14;ReadPosRankSum=2.917;SB=-5.680e+02	GT:AD:DP:GQ:PL	0/1:14,56:70:90:186,0,90
chrXV	301566	.	A	G	1263	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=23.39;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1296,144,0
chrXV	301621	.	C	G	1263	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.05;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1296,144,0
chrXV	301631	.	T	C	1349	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.44;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1382,153,0
chrXV	302184	.	T	C	1664	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.89;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1697,183,0
chrXV	302433	.	T	C	1508	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.66;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1541,168,0
chrXV	302883	.	C	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.04;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1853,198,0
chrXV	303066	.	A	T	1600	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.92;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1633,168,0
chrXV	303067	.	C	T	1551	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=21.25;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1584,174,0
chrXV	303222	.	A	G	1233	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=72;Dels=0.00;FS=4.649;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-1.089;QD=17.12;ReadPosRankSum=1.683;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1266,141,0
chrXV	303785	.	A	G	1560	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.00;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1593,177,0
chrXV	303831	.	T	C	986	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.00;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1019,111,0
chrXV	303924	.	C	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.11;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1642,180,0
chrXV	303991	.	A	T	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.272;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=13.3986;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.767;QD=19.00;ReadPosRankSum=2.361;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1648,171,0
chrXV	304268	.	T	C	1094	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.163;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-0.657;QD=18.86;ReadPosRankSum=1.673;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1127,126,0
chrXV	304796	.	T	C	929	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.379;QD=18.96;ReadPosRankSum=1.662;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:962,108,0
chrXV	305375	.	T	C	2284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=109;Dels=0.00;FS=2.997;HaplotypeScore=15.2062;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.034;QD=20.95;ReadPosRankSum=2.336;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:2,106:109:99:2317,255,0
chrXV	305531	.	G	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.19;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1729,189,0
chrXV	305540	.	G	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.5423;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=21.15;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1767,183,0
chrXV	306086	.	C	T	839	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=20.97;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:872,93,0
chrXV	306087	.	C	T	841	SnpCluster	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.02;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:874,93,0
chrXV	306089	.	G	A	805	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=19.63;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:838,93,0
chrXV	306464	.	A	G	2196	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.64;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2229,240,0
chrXV	306699	.	T	C	1183	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.3772;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=-0.650;QD=18.48;ReadPosRankSum=1.624;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1216,135,0
chrXV	307004	.	T	C	1669	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=22.55;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1702,189,0
chrXV	307049	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;QD=17.20;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1134,123,0
chrXV	307058	.	G	A	1025	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=14.86;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1058,114,0
chrXV	307067	.	T	A	1131	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1824;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=15.28;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1164,123,0
chrXV	307097	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;QD=15.20;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1173,126,0
chrXV	307256	.	A	T	145.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;DP=46;Dels=0.00;FS=1.366;HaplotypeScore=86.3263;MLEAC=1;MLEAF=0.500;MQ=39.51;MQ0=0;MQRankSum=3.579;QD=3.15;ReadPosRankSum=-3.711;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:35,11:46:30:175,0,30
chrXV	307380	.	A	G	1458	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.13;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1491,162,0
chrXV	307849	.	A	T	881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.887;QD=21.49;ReadPosRankSum=1.648;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:99:914,99,0
chrXV	307936	.	C	T	967	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.49;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,40:43:99:1000,108,0
chrXV	308212	.	G	A	895	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.46;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:928,99,0
chrXV	308318	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.253;QD=22.26;ReadPosRankSum=1.679;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1502,165,0
chrXV	308513	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=22.87;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1657,174,0
chrXV	308969	.	G	A	868	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.17;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:901,96,0
chrXV	309144	.	A	G	901	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.71;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:99:934,105,0
chrXV	309237	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.30;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1345,150,0
chrXV	309307	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.59;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1708,195,0
chrXV	309334	.	C	T	1785	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=23.80;SB=-2.890e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1818,192,0
chrXV	309869	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.63;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1368,153,0
chrXV	309936	.	A	G	1427	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2945;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.30;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1460,159,0
chrXV	310070	.	A	G	2237	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=15.8516;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.51;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,101:104:99:2270,246,0
chrXV	310257	.	A	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=20.12;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1341,144,0
chrXV	310258	.	A	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.58;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1306,144,0
chrXV	310633	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5540;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=20.14;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1423,156,0
chrXV	310695	.	T	C	1705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.126;HaplotypeScore=4.9816;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.684;QD=22.43;ReadPosRankSum=1.687;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1738,186,0
chrXV	310777	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.45;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1564,162,0
chrXV	311002	.	T	C	2144	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.145;DP=97;Dels=0.00;FS=6.157;HaplotypeScore=8.9540;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.241;QD=22.10;ReadPosRankSum=2.399;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2177,237,0
chrXV	311157	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.71;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1234,135,0
chrXV	311785	.	T	C	1783	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1816,195,0
chrXV	311912	.	T	C	1939	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.3664;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.54;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1972,219,0
chrXV	312065	.	A	G	2132	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8612;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.21;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2165,243,0
chrXV	312171	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=17.82;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1245,138,0
chrXV	312454	.	A	G	1949	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.5825;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.73;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1982,216,0
chrXV	312492	.	A	G	1923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=88;Dels=0.00;FS=3.782;HaplotypeScore=8.4337;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.927;QD=21.85;ReadPosRankSum=1.692;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,85:88:99:1956,213,0
chrXV	312534	.	T	C	2170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=96;Dels=0.01;FS=0.000;HaplotypeScore=10.5739;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.930;QD=22.60;ReadPosRankSum=1.696;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2203,243,0
chrXV	312919	.	A	G	2131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.06;MQ0=0;MQRankSum=-0.187;QD=21.53;ReadPosRankSum=2.400;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:2,97:99:99:2164,234,0
chrXV	313126	.	T	C	587	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.74;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:66:620,66,0
chrXV	313924	.	T	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.17;SB=-1.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1260,135,0
chrXV	314041	.	A	G	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-0.323;QD=21.32;ReadPosRankSum=1.674;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1291,144,0
chrXV	314073	.	G	T	989	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=19.78;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1022,108,0
chrXV	314395	.	G	A	913	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.02;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:946,102,0
chrXV	314514	.	G	A	853	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=17.77;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:886,93,0
chrXV	315627	.	T	A	673	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.196;DP=52;Dels=0.04;FS=10.224;HaplotypeScore=147.4538;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;MQRankSum=-0.979;QD=12.94;ReadPosRankSum=1.806;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:4,46:50:81:706,81,0
chrXV	316312	.	C	A	469	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=13.03;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:54:502,54,0
chrXV	316327	.	A	C	504	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.571;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;MQRankSum=-0.040;QD=11.45;ReadPosRankSum=1.652;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:60:537,60,0
chrXV	316342	.	T	C	480	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=11.43;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:57:513,57,0
chrXV	316361	.	T	A	292	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=7.30;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:36:325,36,0
chrXV	316431	.	T	A	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;DP=70;Dels=0.00;FS=6.846;HaplotypeScore=194.8790;MLEAC=1;MLEAF=0.500;MQ=35.03;MQ0=0;MQRankSum=0.881;QD=0.47;ReadPosRankSum=-3.798;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,7:70:63:63,0,94
chrXV	316444	.	T	A	136.13	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=35.95;MQ0=0;QD=2.06;SB=-5.591e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:18:169,18,0
chrXV	316591	.	A	T	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=5.518;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.334;QD=21.86;ReadPosRankSum=1.611;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1279,135,0
chrXV	316611	.	A	G	710	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.68;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:81:743,81,0
chrXV	317483	.	T	C	673	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.26;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:78:706,78,0
chrXV	317789	.	A	T	812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=43;Dels=0.00;FS=7.710;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=-0.087;QD=18.88;ReadPosRankSum=2.163;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:2,41:43:87:845,87,0
chrXV	317798	.	C	T	699	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=15.89;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:78:732,78,0
chrXV	317873	.	C	T	825	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.71;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:93:858,93,0
chrXV	318083	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=17.77;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1028,114,0
chrXV	318136	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.26;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1266,135,0
chrXV	318182	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.37;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1176,129,0
chrXV	318668	.	C	G	1997	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.8987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.84;SB=-1.334e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2030,222,0
chrXV	318818	.	T	C	2252	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.5203;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=20.29;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2285,255,0
chrXV	319505	.	C	T	2305	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.26;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2338,243,0
chrXV	319628	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1334,138,0
chrXV	320015	.	C	G	1760	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.47;SB=-2.140e+02	GT:AD:DP:GQ:PL	1/1:0,73:75:99:1793,198,0
chrXV	320174	.	T	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.17;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1284,141,0
chrXV	320437	.	G	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.15;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1783,192,0
chrXV	320726	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.53;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1798,189,0
chrXV	321352	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=19.19;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1722,189,0
chrXV	321368	.	A	C	1454	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=80;Dels=0.00;FS=10.004;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=-0.332;QD=18.17;ReadPosRankSum=2.387;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:2,76:80:99:1487,162,0
chrXV	321588	.	A	G	2167	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.46;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,97:101:99:2200,237,0
chrXV	321655	.	C	G	2681	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=12.4525;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.86;SB=-1.366e+03	GT:AD:DP:GQ:PL	1/1:0,131:135:99:2714,297,0
chrXV	321696	.	A	G	3524.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=160;Dels=0.00;FS=9.935;HaplotypeScore=9.0285;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.043;QD=22.03;ReadPosRankSum=2.357;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:2,157:160:99:3524,402,0
chrXV	321766	.	C	T	3629.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.36;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3629,390,0
chrXV	321972	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=16.63;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1297,141,0
chrXV	322108	.	C	T	2720	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=18.4332;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.50;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,142:147:99:2753,285,0
chrXV	322138	.	G	T	2528	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.7131;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.06;SB=-1.233e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2561,273,0
chrXV	322263	.	G	A	1172	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=19.86;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1205,126,0
chrXV	322741	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.21;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1560,165,0
chrXV	322819	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6865;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.57;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1737,192,0
chrXV	323130	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.05;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1176,129,0
chrXV	323293	.	A	G	2089	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;MQRankSum=0.340;QD=19.34;ReadPosRankSum=1.667;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,106:108:99:2122,237,0
chrXV	323295	.	T	C	2257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=111;Dels=0.01;FS=5.603;HaplotypeScore=7.3764;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;MQRankSum=-0.397;QD=20.33;ReadPosRankSum=1.700;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:1,108:110:99:2290,246,0
chrXV	323335	.	C	T	2343	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.90;SB=-1.292e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2376,246,0
chrXV	323522	.	A	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.9596;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=22.10;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1359,150,0
chrXV	323543	.	T	C	1091	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=21.82;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1124,123,0
chrXV	323567	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=21.51;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1216,135,0
chrXV	323605	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=22.26;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1769,186,0
chrXV	323620	.	A	G	1566	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.82;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1599,177,0
chrXV	323974	.	A	G	785	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.62;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:818,90,0
chrXV	324302	.	T	G	860	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.98;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:893,102,0
chrXV	325152	.	C	A	1988	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=23.95;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2021,222,0
chrXV	325269	.	A	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.53;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1497,165,0
chrXV	325359	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.82;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1501,168,0
chrXV	325410	.	A	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.83;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1560,174,0
chrXV	325674	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.51;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1406,147,0
chrXV	325987	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.67;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1484,156,0
chrXV	326267	.	T	C	2286	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.31;MQ0=0;QD=21.17;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2319,255,0
chrXV	326369	.	A	G	400	PASS	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.43;MQ0=0;QD=21.05;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,19:19:48:433,48,0
chrXV	326393	.	A	G	455	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=22.75;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,20:20:54:488,54,0
chrXV	326413	.	A	G	488	filter	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=23.24;SB=-6.532e-03	GT:AD:DP:GQ:PL	1/1:0,21:21:57:521,57,0
chrXV	326418	.	T	C	519	filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.71;MQ0=0;QD=23.59;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:0,22:22:63:552,63,0
chrXV	326558	.	G	A	1508	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=23.20;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1541,159,0
chrXV	326567	.	A	C	1251	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.91;MQ0=0;MQRankSum=1.543;QD=22.75;ReadPosRankSum=1.669;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1284,141,0
chrXV	326583	.	T	A	1191	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=24.81;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1224,126,0
chrXV	326619	.	A	T	178.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.296;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.354;QD=12.72;ReadPosRankSum=1.532;SB=-2.591e+01	GT:AD:DP:GQ:PL	1/1:2,12:14:24:211,24,0
chrXV	326623	.	C	A	111.26	PASS	AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.47;MQ0=0;QD=12.36;SB=-2.876e+01	GT:AD:DP:GQ:PL	1/1:0,9:9:15:144,15,0
chrXV	326670	.	C	T	217	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=4.72;SB=-1.520e-02	GT:AD:DP:GQ:PL	1/1:0,46:46:30:250,30,0
chrXV	326915	.	A	G	529	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=19.59;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,27:27:63:562,63,0
chrXV	326918	.	C	G	620	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=20.00;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:72:653,72,0
chrXV	327002	.	C	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=18.94;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1302,135,0
chrXV	327020	.	T	C	1272	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.57;MQ0=0;QD=19.27;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1305,144,0
chrXV	327197	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0187;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.77;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1165,129,0
chrXV	327917	.	T	C	1153	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=3.409;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.760;QD=20.23;ReadPosRankSum=1.672;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1186,129,0
chrXV	328029	.	A	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.65;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1712,192,0
chrXV	328049	.	C	T	1607	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.63;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1640,180,0
chrXV	328373	.	C	T	1801	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.1101;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.58;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1834,204,0
chrXV	328457	.	C	T	1782	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;QD=19.58;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1815,189,0
chrXV	328464	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=53.59;MQ0=0;QD=17.85;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1657,186,0
chrXV	328714	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.83;MQ0=0;QD=19.71;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1176,126,0
chrXV	328719	.	C	G	1051	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.52;MQ0=0;QD=17.81;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1084,117,0
chrXV	328747	.	C	T	1132	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=19.19;SB=-2.610e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1165,123,0
chrXV	328791	.	C	A	1274	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8801;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=16.33;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1307,138,0
chrXV	328802	.	A	G	1158	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2573;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;MQRankSum=-0.346;QD=16.31;ReadPosRankSum=1.633;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1191,129,0
chrXV	329046	.	A	T	1046	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=21.79;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1079,114,0
chrXV	329107	.	T	C	1273	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=21.58;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1306,144,0
chrXV	329561	.	C	G	1887	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.6522;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.30;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1920,210,0
chrXV	330217	.	T	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.68;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1398,156,0
chrXV	330566	.	A	G	1486	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8262;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.36;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1519,171,0
chrXV	331119	.	A	T	2235	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.29;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2268,246,0
chrXV	331156	.	A	G	2681	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=7.1017;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.91;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2714,297,0
chrXV	331262	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.44;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1452,159,0
chrXV	331265	.	C	T	1440	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=19.20;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1473,153,0
chrXV	331409	.	G	A	3166	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.98;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3199,360,0
chrXV	331520	.	T	A	2245	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=25.80;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2278,243,0
chrXV	331655	.	T	A	2102	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.62;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2135,234,0
chrXV	331767	.	A	G	2309	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.62;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2342,255,0
chrXV	331895	.	T	C	2763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.412;DP=132;Dels=0.00;FS=3.042;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.658;QD=20.93;ReadPosRankSum=2.354;SB=-1.508e+03	GT:AD:DP:GQ:PL	1/1:2,127:132:99:2796,309,0
chrXV	332096	.	A	T	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=-0.987;QD=21.62;ReadPosRankSum=1.644;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1741,183,0
chrXV	332111	.	G	A	1645	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.82;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1678,177,0
chrXV	332378	.	G	A	1745	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6700;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.81;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1778,192,0
chrXV	332775	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=19.91;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1427,156,0
chrXV	332899	.	T	C	636	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.27;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,31:33:72:669,72,0
chrXV	332916	.	C	T	639	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=21.30;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:69:672,69,0
chrXV	332923	.	A	G	647	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=20.87;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:75:680,75,0
chrXV	333273	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=24.30;SB=-3.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1345,144,0
chrXV	333364	.	C	G	1489	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=20.12;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1522,168,0
chrXV	333391	.	G	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5866;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=17.78;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1580,177,0
chrXV	333403	.	T	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1526;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=15.43;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1406,156,0
chrXV	333897	.	C	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=16.44;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1085,120,0
chrXV	335001	.	A	G	1215	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.29;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1248,138,0
chrXV	335413	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.24;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1323,141,0
chrXV	336579	.	G	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.14;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1143,129,0
chrXV	336629	.	C	T	1733	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.11;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1766,186,0
chrXV	336658	.	A	G	1581	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=21.66;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1614,180,0
chrXV	336821	.	T	C	1541	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-0.261;QD=21.11;ReadPosRankSum=1.685;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1574,174,0
chrXV	337296	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=4.191;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.137;QD=23.03;ReadPosRankSum=1.622;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1484,162,0
chrXV	337464	.	T	C	3669.01	PASS	AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=21.21;SB=-1.596e+03	GT:AD:DP:GQ:PL	1/1:0,170:173:99:3669,411,0
chrXV	337465	.	G	A	3813.01	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.83;SB=-1.662e+03	GT:AD:DP:GQ:PL	1/1:0,167:167:99:3813,400,0
chrXV	337546	.	A	G	2413	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.43;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2446,270,0
chrXV	337635	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.26;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2150,237,0
chrXV	337723	.	C	T	2157	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.35;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2190,228,0
chrXV	337772	.	C	T	2581	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.2335;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=20.81;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2614,276,0
chrXV	338127	.	T	C	559	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.6095;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;MQRankSum=-0.248;QD=15.53;ReadPosRankSum=1.436;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:66:592,66,0
chrXV	338175	.	C	T	591	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=11.15;SB=-3.060e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:66:624,66,0
chrXV	338259	.	G	A	1003	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=8.6733;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.47;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1036,111,0
chrXV	338412	.	G	A	1594	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.52;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1627,171,0
chrXV	339568	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.5041;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=16.31;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1289,141,0
chrXV	339637	.	G	A	1327	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.73;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1360,147,0
chrXV	340281	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=50.7264;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;QD=20.00;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1373,150,0
chrXV	340387	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=19.52;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1224,132,0
chrXV	340401	.	C	A	1250	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=16.67;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1283,138,0
chrXV	340587	.	T	G	1630	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=10.0929;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=18.31;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1663,183,0
chrXV	340588	.	T	G	1664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=9.0982;MLEAC=2;MLEAF=1.00;MQ=48.10;MQ0=0;MQRankSum=-0.538;QD=18.91;ReadPosRankSum=1.692;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1697,186,0
chrXV	340625	.	T	C	1798	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;DP=94;Dels=0.00;FS=2.986;HaplotypeScore=8.0301;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.721;QD=19.13;ReadPosRankSum=2.397;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:2,92:94:99:1831,198,0
chrXV	340736	.	A	G	1808	SnpCluster	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.05;MQ0=0;QD=21.27;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1841,201,0
chrXV	340745	.	G	T	1749	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=21.59;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1782,189,0
chrXV	340746	.	C	G	1690	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=20.86;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1723,189,0
chrXV	340750	.	C	T	1715	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=20.42;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1748,183,0
chrXV	340815	.	T	C	160.06	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=31.59;MQ0=0;QD=2.46;SB=-7.621e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:21:193,21,0
chrXV	340837	.	C	T	727	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=11.36;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:81:760,81,0
chrXV	340839	.	T	C	718	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.137;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;MQRankSum=0.704;QD=11.22;ReadPosRankSum=-0.054;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:61:751,61,0
chrXV	340842	.	A	C	722	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.08;MQ0=0;QD=10.46;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:84:755,84,0
chrXV	340856	.	T	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.51;MQ0=0;QD=11.69;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1050,117,0
chrXV	340867	.	T	C	1087	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=3.547;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=42.35;MQ0=0;MQRankSum=-0.927;QD=12.64;ReadPosRankSum=1.571;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1120,126,0
chrXV	340897	.	A	G	1503	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=17.68;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1536,168,0
chrXV	340969	.	G	A	2269	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=23.88;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2302,240,0
chrXV	341165	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;QD=18.04;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1278,141,0
chrXV	341624	.	G	C	668	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=16.29;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:78:701,78,0
chrXV	341821	.	C	A	1997	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.77;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2030,222,0
chrXV	343173	.	A	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=23.09;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1072,117,0
chrXV	343202	.	A	G	830	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.44;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:96:863,96,0
chrXV	343216	.	C	A	765	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.02;FS=0.000;HaplotypeScore=2.7853;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=15.61;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:84:798,84,0
chrXV	343222	.	A	C	720	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.771;DP=52;Dels=0.00;FS=3.055;HaplotypeScore=5.1514;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;MQRankSum=-0.121;QD=13.85;ReadPosRankSum=1.965;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:2,49:52:84:753,84,0
chrXV	343319	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.23;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1450,156,0
chrXV	343550	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=20.81;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1344,147,0
chrXV	343770	.	G	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.8377;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.58;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1377,147,0
chrXV	344057	.	T	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.07;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1158,126,0
chrXV	344523	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;MQRankSum=0.308;QD=21.15;ReadPosRankSum=1.637;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1577,177,0
chrXV	344777	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;QD=17.10;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1059,114,0
chrXV	344813	.	T	C	721	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=44.90;MQ0=0;MQRankSum=1.237;QD=14.71;ReadPosRankSum=1.662;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:81:754,81,0
chrXV	344820	.	T	C	418.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;DP=44;Dels=0.00;FS=5.707;HaplotypeScore=3.2992;MLEAC=1;MLEAF=0.500;MQ=40.60;MQ0=0;MQRankSum=1.257;QD=9.50;ReadPosRankSum=3.035;SB=-3.320e+02	GT:AD:DP:GQ:PL	0/1:9,33:44:60:448,0,60
chrXV	344823	.	C	T	435.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DP=42;Dels=0.00;FS=3.513;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=39.54;MQ0=0;MQRankSum=0.945;QD=10.36;ReadPosRankSum=1.201;SB=-3.360e+02	GT:AD:DP:GQ:PL	0/1:8,34:42:61:465,0,61
chrXV	344849	.	T	C	247	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.00;MQ0=0;QD=10.74;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:30:280,30,0
chrXV	344856	.	T	C	106.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;DP=18;Dels=0.00;FS=2.077;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=1.678;QD=5.89;ReadPosRankSum=2.826;SB=-9.201e+01	GT:AD:DP:GQ:PL	0/1:9,9:18:51:136,0,51
chrXV	344865	.	T	A	140.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.158;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.578;QD=8.76;ReadPosRankSum=1.838;SB=-7.113e+01	GT:AD:DP:GQ:PL	1/1:8,8:16:18:173,18,0
chrXV	344866	.	T	C	108.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.683;QD=6.75;ReadPosRankSum=1.733;SB=-6.501e+01	GT:AD:DP:GQ:PL	0/1:8,8:16:31:138,0,31
chrXV	344892	.	C	T	52.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.271;DP=55;Dels=0.00;FS=6.021;HaplotypeScore=14.8931;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.118;QD=0.95;ReadPosRankSum=1.630;SB=-7.401e+01	GT:AD:DP:GQ:PL	0/1:38,17:55:82:82,0,379
chrXV	344908	.	T	A	62.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;DP=53;Dels=0.00;FS=1.305;HaplotypeScore=9.1287;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.967;QD=1.17;ReadPosRankSum=2.242;SB=-4.901e+01	GT:AD:DP:GQ:PL	0/1:41,12:53:92:92,0,286
chrXV	344918	.	T	C	62.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;DP=49;Dels=0.00;FS=4.936;HaplotypeScore=14.9140;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.151;QD=1.27;ReadPosRankSum=3.453;SB=-4.201e+01	GT:AD:DP:GQ:PL	0/1:37,12:49:92:92,0,239
chrXV	344920	.	G	A	66.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;DP=49;Dels=0.00;FS=4.980;HaplotypeScore=14.9140;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-1.549;QD=1.35;ReadPosRankSum=4.062;SB=-3.401e+01	GT:AD:DP:GQ:PL	0/1:35,12:49:96:96,0,232
chrXV	344921	.	T	C	388	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=12.9260;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.92;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:45:421,45,0
chrXV	344928	.	T	C	60.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=27.2103;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.090;QD=1.22;ReadPosRankSum=1.407;SB=-4.501e+01	GT:AD:DP:GQ:PL	0/1:40,9:49:90:90,0,266
chrXV	344937	.	T	A	226.01	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.647;DP=47;Dels=0.00;FS=4.086;HaplotypeScore=26.4017;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.468;QD=4.81;ReadPosRankSum=0.759;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:27,19:47:27:259,27,0
chrXV	344938	.	T	C	220.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;DP=48;Dels=0.00;FS=4.201;HaplotypeScore=27.3996;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.533;QD=4.58;ReadPosRankSum=0.512;SB=-1.390e+02	GT:AD:DP:GQ:PL	0/1:28,20:48:98:250,0,98
chrXV	344943	.	C	T	53.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.020;DP=60;Dels=0.00;FS=4.719;HaplotypeScore=38.8497;MLEAC=1;MLEAF=0.500;MQ=29.78;MQ0=0;MQRankSum=0.490;QD=0.88;ReadPosRankSum=0.582;SB=-3.701e+01	GT:AD:DP:GQ:PL	0/1:48,12:60:83:83,0,385
chrXV	344944	.	T	A	56.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DP=61;Dels=0.00;FS=3.617;HaplotypeScore=39.1429;MLEAC=1;MLEAF=0.500;MQ=30.52;MQ0=0;MQRankSum=-1.261;QD=0.92;ReadPosRankSum=3.095;SB=-2.250e+02	GT:AD:DP:GQ:PL	0/1:34,26:61:86:86,0,402
chrXV	344946	.	A	G	44.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;DP=62;Dels=0.00;FS=4.745;HaplotypeScore=79.3112;MLEAC=1;MLEAF=0.500;MQ=30.50;MQ0=0;MQRankSum=-0.100;QD=0.71;ReadPosRankSum=0.553;SB=-8.007e+00	GT:AD:DP:GQ:PL	0/1:50,12:62:74:74,0,433
chrXV	344953	.	G	A	34.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.715;DP=69;Dels=0.00;FS=4.586;HaplotypeScore=52.9643;MLEAC=1;MLEAF=0.500;MQ=30.22;MQ0=0;MQRankSum=0.119;QD=0.49;ReadPosRankSum=0.087;SB=-2.801e+01	GT:AD:DP:GQ:PL	0/1:57,12:69:64:64,0,475
chrXV	344954	.	T	C	24.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;DP=68;Dels=0.00;FS=3.459;HaplotypeScore=42.0201;MLEAC=1;MLEAF=0.500;MQ=30.23;MQ0=0;MQRankSum=0.853;QD=0.35;ReadPosRankSum=2.060;SB=-1.980e+02	GT:AD:DP:GQ:PL	0/1:44,24:68:54:54,0,544
chrXV	344956	.	G	T	54.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=3.324;DP=69;Dels=0.00;FS=2.866;HaplotypeScore=41.0467;MLEAC=1;MLEAF=0.500;MQ=30.22;MQ0=0;MQRankSum=0.577;QD=0.78;ReadPosRankSum=-1.989;SB=-5.401e+01	GT:AD:DP:GQ:PL	0/1:33,12:69:84:84,0,379
chrXV	344964	.	C	T	40.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.075;DP=65;Dels=0.00;FS=7.451;HaplotypeScore=19.3765;MLEAC=1;MLEAF=0.500;MQ=30.29;MQ0=0;MQRankSum=0.512;QD=0.62;ReadPosRankSum=0.238;SB=-7.901e+01	GT:AD:DP:GQ:PL	0/1:46,19:65:70:70,0,490
chrXV	344973	.	G	A	443	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=9.1876;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=10.30;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:51:476,51,0
chrXV	344993	.	T	C	324	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=12.6143;MLEAC=2;MLEAF=1.00;MQ=31.49;MQ0=0;QD=9.82;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,32:33:39:357,39,0
chrXV	345000	.	T	C	237.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;DP=33;Dels=0.00;FS=4.613;HaplotypeScore=15.4569;MLEAC=1;MLEAF=0.500;MQ=31.49;MQ0=0;MQRankSum=-1.481;QD=7.18;ReadPosRankSum=1.130;SB=-3.338e+02	GT:AD:DP:GQ:PL	0/1:5,28:33:40:267,0,40
chrXV	345003	.	C	T	337	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=8.6777;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=10.53;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:39:370,39,0
chrXV	345029	.	T	C	219.01	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=7.6872;MLEAC=2;MLEAF=1.00;MQ=32.51;MQ0=0;QD=9.52;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:27:252,27,0
chrXV	345052	.	T	A	51.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.496;QD=3.71;ReadPosRankSum=-1.240;SB=-1.239e+02	GT:AD:DP:GQ:PL	1/1:1,13:14:9:84,9,0
chrXV	345062	.	T	C	127.13	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.735;DP=17;Dels=0.00;FS=3.854;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.714;QD=7.48;ReadPosRankSum=0.510;SB=-1.401e+02	GT:AD:DP:GQ:PL	1/1:1,16:17:18:160,18,0
chrXV	345064	.	G	A	132.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=7.77;SB=-1.601e+02	GT:AD:DP:GQ:PL	1/1:0,16:17:18:165,18,0
chrXV	345072	.	C	T	199.03	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.286;DP=31;Dels=0.00;FS=3.153;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=0.503;QD=6.42;ReadPosRankSum=1.286;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:1,30:31:24:232,24,0
chrXV	345081	.	G	A	300	SnpCluster	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.09;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:36:333,36,0
chrXV	345087	.	C	T	370	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.81;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:42:403,42,0
chrXV	345090	.	A	G	373	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.11;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:45:406,45,0
chrXV	345097	.	G	A	463	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.45;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:51:496,51,0
chrXV	345100	.	G	T	491	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.02;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:54:524,54,0
chrXV	345101	.	T	C	464	SnpCluster	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=9.47;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:54:497,54,0
chrXV	345108	.	T	C	499	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.78;MQ0=0;QD=8.32;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:57:532,57,0
chrXV	345111	.	C	T	513	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.79;MQ0=0;QD=7.89;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:57:546,57,0
chrXV	345165	.	C	T	993	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.95;MQ0=0;QD=14.19;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1026,108,0
chrXV	345183	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=15.22;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1205,126,0
chrXV	345678	.	C	T	1187	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=20.12;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1220,132,0
chrXV	345689	.	T	C	963	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=19.26;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:996,105,0
chrXV	345952	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.88;MQ0=0;MQRankSum=-1.376;QD=17.28;ReadPosRankSum=1.630;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1225,138,0
chrXV	345964	.	T	C	1042	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=15.55;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1075,117,0
chrXV	345973	.	G	A	933	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;QD=16.09;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:966,108,0
chrXV	346005	.	C	A	762	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=38.6067;MLEAC=2;MLEAF=1.00;MQ=33.65;MQ0=0;QD=14.38;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:795,84,0
chrXV	346026	.	A	G	733	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=56.9551;MLEAC=2;MLEAF=1.00;MQ=33.69;MQ0=0;QD=12.22;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:84:766,84,0
chrXV	346070	.	C	T	1430	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4167;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;MQRankSum=0.021;QD=17.65;ReadPosRankSum=0.235;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1463,156,0
chrXV	346100	.	A	G	2073	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=20.13;SB=-1.068e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2106,234,0
chrXV	346107	.	G	A	2539	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=22.67;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2572,273,0
chrXV	346137	.	A	G	3153	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=10.2912;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=21.30;SB=-1.519e+03	GT:AD:DP:GQ:PL	1/1:0,141:148:99:3186,348,0
chrXV	346243	.	G	A	1159	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.07;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1192,138,0
chrXV	346267	.	A	G	863	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=19.61;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:896,99,0
chrXV	346366	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=44.28;MQ0=0;MQRankSum=-1.274;QD=18.68;ReadPosRankSum=-0.153;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1303,130,0
chrXV	346416	.	T	C	791	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.85;MQ0=0;QD=14.38;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:824,93,0
chrXV	346417	.	G	A	801	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.86;MQ0=0;QD=13.35;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:93:834,93,0
chrXV	346429	.	C	T	675	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.36;MQ0=0;QD=13.50;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:78:708,78,0
chrXV	346495	.	G	A	498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.187;DP=51;Dels=0.00;FS=5.592;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;MQRankSum=2.681;QD=9.76;ReadPosRankSum=0.432;SB=-3.957e+02	GT:AD:DP:GQ:PL	1/1:9,42:51:57:531,57,0
chrXV	346519	.	G	A	715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.211;DP=67;Dels=0.00;FS=7.737;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=0.079;QD=10.67;ReadPosRankSum=5.006;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:10,57:67:56:748,56,0
chrXV	346528	.	G	A	888	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.23;MQ0=0;QD=13.25;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:921,99,0
chrXV	346542	.	T	C	1190	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=14.51;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1223,132,0
chrXV	346608	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.256;QD=20.20;ReadPosRankSum=1.689;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1649,183,0
chrXV	346720	.	A	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.38;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1810,201,0
chrXV	346765	.	T	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=23.52;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1609,174,0
chrXV	346809	.	A	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.3561;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=17.03;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1072,117,0
chrXV	346825	.	A	C	1064	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=15.88;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1097,123,0
chrXV	347064	.	A	G	2005	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.11;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2038,225,0
chrXV	347117	.	T	A	2068	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.173;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3007;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=-0.689;QD=22.24;ReadPosRankSum=1.695;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2101,203,0
chrXV	347788	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.742;DP=51;Dels=0.00;FS=6.031;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;MQRankSum=-0.821;QD=16.31;ReadPosRankSum=2.862;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:3,48:51:96:865,96,0
chrXV	347793	.	A	G	847	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=52.13;MQ0=0;QD=16.94;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:880,99,0
chrXV	347863	.	G	T	929	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.77;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:962,102,0
chrXV	347921	.	A	G	887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=0.277;QD=17.39;ReadPosRankSum=1.663;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:920,102,0
chrXV	347922	.	C	T	966	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.58;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:999,105,0
chrXV	348030	.	A	G	1774	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.387;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=11.7312;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-0.415;QD=20.16;ReadPosRankSum=1.160;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:2,84:88:99:1807,183,0
chrXV	348085	.	T	G	1501	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.07;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1534,165,0
chrXV	348098	.	T	C	1334	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.33;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1367,153,0
chrXV	348149	.	C	T	836	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=16.08;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:96:869,96,0
chrXV	348182	.	A	G	1153	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.06;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:1186,129,0
chrXV	348210	.	G	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=21.14;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1090,117,0
chrXV	348325	.	G	A	1754	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.20;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1787,189,0
chrXV	348346	.	C	T	1790	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.67;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1823,198,0
chrXV	348459	.	T	C	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.5648;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.683;QD=22.59;ReadPosRankSum=1.683;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1614,180,0
chrXV	348559	.	C	T	1021	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=18.23;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1054,114,0
chrXV	348744	.	A	G	2808	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=5.9116;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.02;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,120:122:99:2841,321,0
chrXV	348858	.	T	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.35;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:74:99:1613,177,0
chrXV	349164	.	T	C	2258	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.53;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2291,252,0
chrXV	349192	.	A	G	2326	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.8535;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.95;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,107:111:99:2359,255,0
chrXV	349328	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3186;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.67;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1480,162,0
chrXV	349513	.	T	C	2328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=4.631;HaplotypeScore=5.0773;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=1.249;QD=19.08;ReadPosRankSum=1.704;SB=-1.111e+03	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2361,255,0
chrXV	350588	.	G	A	1878	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.84;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1911,210,0
chrXV	351607	.	C	T	2787	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=11.6661;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.03;SB=-1.461e+03	GT:AD:DP:GQ:PL	1/1:0,118:121:99:2820,306,0
chrXV	351721	.	A	G	2002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=95;Dels=0.00;FS=3.757;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=1.185;QD=21.07;ReadPosRankSum=1.696;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2035,225,0
chrXV	351780	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=17.74;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,77:80:99:1452,159,0
chrXV	351787	.	C	T	1324	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=17.42;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1357,141,0
chrXV	351979	.	T	C	2319	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.96;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2352,261,0
chrXV	352012	.	C	T	2450	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.11;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2483,264,0
chrXV	352075	.	T	C	1645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=4.139;HaplotypeScore=8.8203;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.607;QD=19.58;ReadPosRankSum=1.690;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1678,189,0
chrXV	352138	.	G	A	1269	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=17.62;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1302,141,0
chrXV	352379	.	C	T	1863	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.17;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1896,201,0
chrXV	352665	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=18.20;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:961,105,0
chrXV	352775	.	A	G	1048	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=18.07;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1081,117,0
chrXV	353226	.	C	G	1114	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.42;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1147,126,0
chrXV	353491	.	T	C	1840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.538;QD=20.91;ReadPosRankSum=1.692;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1873,204,0
chrXV	353934	.	C	T	3478.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;DP=155;Dels=0.00;FS=4.241;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.225;QD=22.44;ReadPosRankSum=0.472;SB=-1.428e+03	GT:AD:DP:GQ:PL	1/1:1,153:155:99:3478,348,0
chrXV	354230	.	C	G	1286	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.2760;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=18.64;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1319,141,0
chrXV	354233	.	A	G	1308	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.718;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1760;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;MQRankSum=0.209;QD=18.96;ReadPosRankSum=2.718;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1341,150,0
chrXV	354556	.	A	G	1392	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.45;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1425,156,0
chrXV	354577	.	G	A	1434	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=23.51;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1467,153,0
chrXV	354628	.	C	T	807	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=17.93;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:840,87,0
chrXV	354635	.	A	G	849	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=18.46;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:882,96,0
chrXV	354662	.	A	T	1201	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.45;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1234,126,0
chrXV	355309	.	C	T	1971	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.6642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.04;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2004,216,0
chrXV	355535	.	T	C	2596	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.38;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2629,288,0
chrXV	356119	.	T	G	1084	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.06;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1117,123,0
chrXV	356289	.	T	C	2577	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=24.54;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2610,285,0
chrXV	357029	.	C	T	1447	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=8.5954;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.92;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1480,159,0
chrXV	357164	.	A	G	1015	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1048,114,0
chrXV	357276	.	A	G	1594	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.54;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1627,186,0
chrXV	357367	.	C	T	1014	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=7.3991;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.50;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1047,114,0
chrXV	358471	.	C	T	1800	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.32;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1833,192,0
chrXV	359068	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.36;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1902,198,0
chrXV	360092	.	T	C	1869	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.07;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1902,207,0
chrXV	360638	.	G	A	2652	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=20.72;SB=-1.396e+03	GT:AD:DP:GQ:PL	1/1:0,128:128:99:2685,294,0
chrXV	361115	.	T	C	505	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=14.85;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:60:538,60,0
chrXV	361461	.	C	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=24.70;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1120,120,0
chrXV	361568	.	C	A	1152	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.33;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1185,126,0
chrXV	361960	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.11;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1294,144,0
chrXV	366444	.	A	G	1545	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.0512;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.231;QD=20.33;ReadPosRankSum=1.595;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1578,174,0
chrXV	366495	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=3.846;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-0.866;QD=19.52;ReadPosRankSum=1.689;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1595,177,0
chrXV	366618	.	C	T	2314	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.0199;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.37;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2347,255,0
chrXV	366770	.	G	A	1764	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.05;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1797,189,0
chrXV	366780	.	C	T	1533	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=18.93;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1566,165,0
chrXV	366879	.	A	C	1175	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.26;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1208,132,0
chrXV	366884	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.47;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1201,126,0
chrXV	366955	.	A	C	2260	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=6.6082;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.15;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2293,255,0
chrXV	367217	.	C	T	981	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=18.51;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1014,108,0
chrXV	367258	.	G	A	1379	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6594;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.15;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1412,156,0
chrXV	367292	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=19.49;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1417,159,0
chrXV	367410	.	T	C	1724	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=20.77;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1757,198,0
chrXV	367529	.	G	T	1282	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.42;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1315,138,0
chrXV	367553	.	C	T	1568	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=21.48;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1601,168,0
chrXV	367620	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=21.20;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1602,165,0
chrXV	367673	.	A	G	1717	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.20;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1750,192,0
chrXV	367692	.	A	G	1600	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=20.25;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1633,180,0
chrXV	367724	.	A	G	1147	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;QD=15.29;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1180,129,0
chrXV	367742	.	G	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9773;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=14.68;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1046,117,0
chrXV	368025	.	A	G	1736	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=23.46;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1769,189,0
chrXV	368066	.	C	T	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=87.1659;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=0.22;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:6:52,6,0
chrXV	368264	.	A	C	1409	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.88;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1442,156,0
chrXV	368375	.	C	T	2277	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=22.11;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2310,243,0
chrXV	368503	.	C	A	2312	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=22.89;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2345,252,0
chrXV	368964	.	A	C	1369	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.43;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1402,153,0
chrXV	369165	.	C	T	2297	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.09;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2330,252,0
chrXV	369245	.	G	T	1471	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.52;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1504,162,0
chrXV	369329	.	A	G	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;DP=81;Dels=0.00;FS=6.185;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;MQRankSum=-0.167;QD=21.31;ReadPosRankSum=2.389;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1759,192,0
chrXV	369380	.	C	T	1918	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.5141;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.56;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1951,216,0
chrXV	369488	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=22.40;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1422,150,0
chrXV	369788	.	A	T	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=7.4972;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.817;QD=19.42;ReadPosRankSum=1.667;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1062,117,0
chrXV	369905	.	C	T	1280	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.39;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1313,147,0
chrXV	370133	.	G	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1267,141,0
chrXV	370186	.	G	A	1234	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.85;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1267,135,0
chrXV	370918	.	A	G	2973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=140;Dels=0.00;FS=7.725;HaplotypeScore=11.1621;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.826;QD=21.24;ReadPosRankSum=2.396;SB=-1.445e+03	GT:AD:DP:GQ:PL	1/1:2,136:140:99:3006,330,0
chrXV	371158	.	A	G	2567	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.57;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2600,285,0
chrXV	371186	.	A	G	2403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=114;Dels=0.00;FS=5.523;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.884;QD=21.08;ReadPosRankSum=2.938;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:3,110:114:99:2436,264,0
chrXV	371360	.	T	C	1759	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.27;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1792,198,0
chrXV	371543	.	G	C	1912	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.60;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1945,213,0
chrXV	372211	.	T	C	1403	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.58;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1436,156,0
chrXV	372266	.	C	T	1622	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.53;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1655,174,0
chrXV	372392	.	A	G	2531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.671;QD=22.20;ReadPosRankSum=1.702;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2564,279,0
chrXV	372460	.	T	C	1875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=95;Dels=0.00;FS=3.867;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.128;QD=19.74;ReadPosRankSum=1.696;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1908,213,0
chrXV	372807	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.01;FS=0.000;HaplotypeScore=26.3004;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.01;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:1852,207,0
chrXV	373468	.	G	T	3107	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.0322;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.14;SB=-1.966e+03	GT:AD:DP:GQ:PL	1/1:0,146:147:99:3140,330,0
chrXV	373539	.	A	G	2032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=5.315;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.183;QD=23.91;ReadPosRankSum=1.691;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2065,228,0
chrXV	373586	.	T	C	1204	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.61;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1237,135,0
chrXV	373970	.	A	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.21;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1185,132,0
chrXV	374373	.	G	A	2088	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.73;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2121,219,0
chrXV	374613	.	C	T	1652	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.1308;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.74;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1685,177,0
chrXV	374669	.	G	A	1451	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.2213;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.03;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1484,156,0
chrXV	374751	.	G	A	1693	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=20.65;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1726,180,0
chrXV	374763	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=-0.022;QD=21.11;ReadPosRankSum=1.601;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1701,186,0
chrXV	374879	.	C	T	2019	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.75;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2052,216,0
chrXV	375158	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;MQRankSum=-1.358;QD=15.73;ReadPosRankSum=1.592;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1197,129,0
chrXV	375177	.	A	T	1285	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=15.48;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1318,144,0
chrXV	375180	.	C	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=16.58;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1459,156,0
chrXV	375195	.	C	T	1963	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.4436;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.25;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1996,210,0
chrXV	375314	.	C	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.67;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1683,186,0
chrXV	375315	.	G	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.86;MQ0=0;QD=16.25;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,98:100:99:1658,183,0
chrXV	375648	.	C	T	2142	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.79;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2175,228,0
chrXV	375777	.	T	A	1669	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=24.19;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1702,177,0
chrXV	375812	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.774;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.341;QD=20.37;ReadPosRankSum=1.509;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1316,144,0
chrXV	375910	.	T	A	1846	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.85;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1879,198,0
chrXV	376030	.	C	T	2738	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.12;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2771,294,0
chrXV	376210	.	C	T	1315	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.48;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1348,141,0
chrXV	376252	.	C	T	1115	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.04;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1148,123,0
chrXV	376388	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=15.76;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1199,135,0
chrXV	376486	.	A	T	1139	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=60;Dels=0.00;FS=6.705;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.256;QD=18.98;ReadPosRankSum=2.286;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1172,123,0
chrXV	376520	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.2516;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=22.49;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1180,126,0
chrXV	376576	.	G	A	909	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=16.53;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:942,99,0
chrXV	376957	.	G	A	1646	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=21.38;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1679,177,0
chrXV	377032	.	T	C	1128	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=16.35;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1161,132,0
chrXV	377037	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8808;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.83;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1295,135,0
chrXV	377174	.	C	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.43;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1218,135,0
chrXV	377281	.	G	A	1775	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=19.09;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1808,192,0
chrXV	377284	.	A	G	1670	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.58;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1703,189,0
chrXV	377548	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.84;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1596,177,0
chrXV	377605	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=20.78;SB=-1.179e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1945,207,0
chrXV	377656	.	G	A	2337	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=10.4376;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.25;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2370,249,0
chrXV	377730	.	C	T	2853	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=9.0273;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.29;SB=-1.435e+03	GT:AD:DP:GQ:PL	1/1:0,132:134:99:2886,309,0
chrXV	377787	.	G	A	2136	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.5684;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.02;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2169,228,0
chrXV	377823	.	G	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.12;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1716,192,0
chrXV	377924	.	T	C	1058	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=17.93;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1091,117,0
chrXV	378043	.	T	A	2169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=4.949;HaplotypeScore=7.9922;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=-0.346;QD=21.69;ReadPosRankSum=1.697;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2202,234,0
chrXV	378122	.	C	G	2137	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.8896;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.75;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2170,237,0
chrXV	378158	.	G	A	2044	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=10.8774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.52;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2077,219,0
chrXV	378211	.	T	C	1835	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.0848;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-2.004;QD=22.11;ReadPosRankSum=2.331;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:2,81:83:99:1868,201,0
chrXV	378248	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.22;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1610,174,0
chrXV	378327	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.16;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1162,132,0
chrXV	378890	.	A	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.02;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1060,114,0
chrXV	379094	.	A	G	1287	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.98;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1320,144,0
chrXV	379169	.	C	T	1125	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.74;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1158,123,0
chrXV	379461	.	C	T	1267	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=8.0140;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.46;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1300,138,0
chrXV	379739	.	A	G	1134	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.29;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1167,126,0
chrXV	379841	.	C	T	1780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DP=82;Dels=0.00;FS=5.159;HaplotypeScore=6.9266;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=-1.267;QD=21.71;ReadPosRankSum=-1.563;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1813,172,0
chrXV	379879	.	C	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=23.16;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1863,195,0
chrXV	379978	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.80;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1801,195,0
chrXV	380471	.	A	C	1152	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3036;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.00;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1185,132,0
chrXV	380513	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.00;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1419,153,0
chrXV	380563	.	C	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.25;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1893,201,0
chrXV	380751	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.206;QD=19.32;ReadPosRankSum=1.674;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1192,132,0
chrXV	380935	.	G	C	2904	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=10.4263;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.83;SB=-1.436e+03	GT:AD:DP:GQ:PL	1/1:0,125:133:99:2937,321,0
chrXV	381359	.	T	C	888	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=18.89;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,44:47:99:921,99,0
chrXV	381391	.	A	G	1019	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.15;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1052,117,0
chrXV	381445	.	G	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.45;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1323,135,0
chrXV	381487	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=3.332;HaplotypeScore=9.3172;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=1.547;QD=20.21;ReadPosRankSum=-0.619;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1185,132,0
chrXV	381556	.	A	G	1557	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.5570;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.93;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1590,171,0
chrXV	382531	.	A	G	1784	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.49;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1817,195,0
chrXV	382624	.	C	T	2140	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4381;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=23.78;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2173,228,0
chrXV	382816	.	C	T	1806	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.57;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1839,189,0
chrXV	382953	.	C	T	2278	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.98;SB=-1.544e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2311,246,0
chrXV	382955	.	G	A	2273	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.77;MQ0=0;QD=19.94;SB=-1.519e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2306,240,0
chrXV	383156	.	C	T	1869	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.95;MQ0=0;QD=18.88;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1902,207,0
chrXV	383743	.	A	G	918	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.6875;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.35;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:951,108,0
chrXV	383827	.	C	T	1718	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.21;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1751,186,0
chrXV	383991	.	A	G	1249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3819;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.326;QD=18.10;ReadPosRankSum=1.682;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1282,141,0
chrXV	384137	.	C	G	1601	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.01;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:80:99:1634,180,0
chrXV	384208	.	C	T	1888	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=23.02;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1921,201,0
chrXV	384314	.	G	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.55;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1304,135,0
chrXV	384491	.	C	A	2349	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.95;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2382,249,0
chrXV	384545	.	T	C	2065	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=22.45;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2098,237,0
chrXV	384665	.	A	G	997	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=20.35;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1030,114,0
chrXV	384669	.	A	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;QD=20.14;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1060,114,0
chrXV	384747	.	A	G	776	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.44;MQ0=0;QD=15.84;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:809,90,0
chrXV	384786	.	G	A	654	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;QD=15.57;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:687,78,0
chrXV	384791	.	G	C	650	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.82;MQ0=0;QD=15.85;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:78:683,78,0
chrXV	385049	.	A	T	989	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=24.12;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1022,105,0
chrXV	385088	.	G	A	780	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=19.50;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:84:813,84,0
chrXV	385093	.	A	C	692	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=42;Dels=0.00;FS=3.575;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;MQRankSum=-0.042;QD=16.48;ReadPosRankSum=1.648;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:1,40:42:81:725,81,0
chrXV	385116	.	C	T	690	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=17.25;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:75:723,75,0
chrXV	385189	.	C	T	464	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=11.90;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:57:497,57,0
chrXV	385213	.	G	A	201.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;DP=90;Dels=0.00;FS=11.532;HaplotypeScore=3.3576;MLEAC=1;MLEAF=0.500;MQ=34.06;MQ0=0;MQRankSum=0.361;QD=2.23;ReadPosRankSum=5.203;SB=-3.090e+02	GT:AD:DP:GQ:PL	0/1:56,33:90:99:231,0,108
chrXV	385377	.	C	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.57;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1198,129,0
chrXV	385654	.	A	T	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=78;Dels=0.01;FS=4.658;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;MQRankSum=0.957;QD=19.64;ReadPosRankSum=1.687;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1565,168,0
chrXV	385677	.	T	G	1573	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;QD=19.91;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1606,180,0
chrXV	385683	.	A	C	1464	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=19.01;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1497,168,0
chrXV	385806	.	G	A	2187	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.77;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2220,234,0
chrXV	386205	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.89;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1203,132,0
chrXV	386226	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.06;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1357,147,0
chrXV	386292	.	C	T	1611	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.01;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1644,171,0
chrXV	386408	.	T	C	1720	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.93;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1753,186,0
chrXV	386436	.	C	T	1656	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.20;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1689,177,0
chrXV	386470	.	A	C	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.720;QD=20.25;ReadPosRankSum=1.654;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1835,204,0
chrXV	386503	.	T	A	1387	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.02;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1420,156,0
chrXV	386524	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.66;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1173,129,0
chrXV	386541	.	A	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=18.53;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1052,114,0
chrXV	386563	.	C	T	748	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=17.40;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:781,81,0
chrXV	387059	.	C	A	2015	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.77;SB=-1.224e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2048,216,0
chrXV	387643	.	T	C	1832	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.82;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1865,207,0
chrXV	387652	.	A	G	1706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=3.522;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=-0.107;QD=20.80;ReadPosRankSum=1.689;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1739,189,0
chrXV	387904	.	G	T	1894	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5484;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=22.28;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,80:85:99:1927,201,0
chrXV	387926	.	T	C	1615	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.12;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1648,180,0
chrXV	387970	.	G	A	1178	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.67;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1211,132,0
chrXV	388275	.	C	T	805	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=16.43;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,47:49:87:838,87,0
chrXV	388324	.	T	C	1257	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=4.1534;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=20.27;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1290,138,0
chrXV	388327	.	A	G	1254	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0846;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.29;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1287,144,0
chrXV	388333	.	C	A	1281	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.0682;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=18.84;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1314,141,0
chrXV	388478	.	C	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=23.73;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1552,162,0
chrXV	388544	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=54.06;MQ0=0;QD=23.11;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1350,150,0
chrXV	388600	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=21.35;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1378,153,0
chrXV	388702	.	A	G	1343	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=20.98;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1376,150,0
chrXV	388731	.	C	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=46.37;MQ0=0;QD=18.35;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1464,165,0
chrXV	388782	.	G	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.15;MQ0=0;QD=19.42;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1567,171,0
chrXV	388789	.	A	G	1377	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=62.8230;MLEAC=2;MLEAF=1.00;MQ=36.12;MQ0=0;QD=18.36;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1410,156,0
chrXV	388824	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.98;MQ0=0;QD=19.39;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1313,144,0
chrXV	388835	.	A	C	1015	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.92;MQ0=0;QD=17.20;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1048,117,0
chrXV	388869	.	T	G	703	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=13.52;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:81:736,81,0
chrXV	388876	.	T	C	704	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=13.28;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:737,84,0
chrXV	388937	.	C	T	632	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=15.05;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:665,75,0
chrXV	389090	.	G	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=22.44;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1783,201,0
chrXV	389116	.	A	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=0;QD=17.90;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1304,141,0
chrXV	389129	.	T	A	1196	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.47;MQ0=0;QD=15.14;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1229,129,0
chrXV	389171	.	T	C	664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.125;DP=92;Dels=0.00;FS=2.630;HaplotypeScore=2.6102;MLEAC=2;MLEAF=1.00;MQ=28.77;MQ0=0;MQRankSum=-0.636;QD=7.22;ReadPosRankSum=2.342;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:2,89:92:78:697,78,0
chrXV	389175	.	A	T	721	SnpCluster	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=7.84;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:81:754,81,0
chrXV	389183	.	C	A	782	SnpCluster	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=7.98;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,95:98:87:815,87,0
chrXV	389185	.	C	T	765	SnpCluster	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=7.73;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:87:798,87,0
chrXV	389237	.	T	G	2347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;MQRankSum=-1.546;QD=18.05;ReadPosRankSum=1.705;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,129:130:99:2380,267,0
chrXV	389276	.	A	G	2625	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.44;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2658,294,0
chrXV	389368	.	A	G	1642	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.32;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1675,180,0
chrXV	390692	.	A	G	1405	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.29;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1438,156,0
chrXV	390875	.	G	A	1115	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=18.28;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1148,123,0
chrXV	390890	.	C	T	987	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=17.62;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1020,114,0
chrXV	390986	.	A	G	1821	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.061;QD=21.17;ReadPosRankSum=1.691;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1854,204,0
chrXV	391225	.	C	T	800	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.05;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:833,90,0
chrXV	391240	.	A	G	843	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=22.78;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:876,96,0
chrXV	391330	.	C	T	1090	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.96;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1123,120,0
chrXV	391349	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.12;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1039,117,0
chrXV	391445	.	C	A	1716	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.29;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1749,183,0
chrXV	391475	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.988;DP=62;Dels=0.00;FS=16.126;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.750;QD=20.27;ReadPosRankSum=3.917;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:6,56:62:99:1290,141,0
chrXV	391647	.	C	G	1391	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.40;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1424,156,0
chrXV	391953	.	C	T	869	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.75;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:93:902,93,0
chrXV	392174	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=4.327;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;MQRankSum=-0.986;QD=22.08;ReadPosRankSum=1.519;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1468,165,0
chrXV	392258	.	G	A	1141	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=22.82;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1174,126,0
chrXV	392314	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.78;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1400,153,0
chrXV	392644	.	T	C	1841	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.59;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1874,207,0
chrXV	392662	.	G	A	1829	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.4555;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=18.86;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1862,195,0
chrXV	392767	.	A	T	1912	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.316;QD=19.12;ReadPosRankSum=1.697;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1945,207,0
chrXV	392963	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=10.3398;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=18.15;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1358,141,0
chrXV	393187	.	T	C	1003	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.57;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1036,114,0
chrXV	393383	.	G	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.48;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1408,156,0
chrXV	393430	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.2954;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.21;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1432,156,0
chrXV	393703	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.00;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1314,141,0
chrXV	393958	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-0.735;QD=21.84;ReadPosRankSum=-0.210;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1496,171,0
chrXV	394003	.	G	A	1315	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.21;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1348,138,0
chrXV	394090	.	T	G	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.105;QD=21.21;ReadPosRankSum=1.680;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1433,159,0
chrXV	394567	.	A	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.9962;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.74;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1316,144,0
chrXV	394666	.	A	G	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=50;Dels=0.00;FS=4.114;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=1.379;QD=22.40;ReadPosRankSum=1.520;SB=-4.690e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:1153,129,0
chrXV	394706	.	T	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.71;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1214,129,0
chrXV	395052	.	G	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.5302;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.54;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1363,147,0
chrXV	395268	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.00;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1433,153,0
chrXV	395321	.	T	C	1406	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.83;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1439,159,0
chrXV	395611	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1370,141,0
chrXV	395734	.	T	G	1307	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.22;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1340,144,0
chrXV	395746	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=19.58;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1188,129,0
chrXV	396253	.	A	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.45;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1380,153,0
chrXV	396447	.	A	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=18.97;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1133,123,0
chrXV	396544	.	G	C	2078	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.42;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2111,231,0
chrXV	396731	.	G	T	1270	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=20.82;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1303,138,0
chrXV	396805	.	G	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=15.67;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1114,120,0
chrXV	396823	.	T	C	1070	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.83;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1103,120,0
chrXV	397180	.	T	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3980;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.97;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1417,156,0
chrXV	397231	.	A	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.87;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1515,159,0
chrXV	397450	.	T	C	1125	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.83;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1158,129,0
chrXV	397562	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.60;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1588,168,0
chrXV	397607	.	G	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9120;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.66;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1547,162,0
chrXV	397645	.	C	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.66;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1429,159,0
chrXV	397657	.	T	C	1411	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=20.16;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1444,156,0
chrXV	397828	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1505;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.436;QD=21.49;ReadPosRankSum=1.690;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1795,195,0
chrXV	398023	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=19.83;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1540,171,0
chrXV	398134	.	G	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.44;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1491,159,0
chrXV	398242	.	C	T	1361	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4373;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=20.01;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1394,147,0
chrXV	398256	.	C	T	1327	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.2252;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=19.23;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1360,144,0
chrXV	398404	.	C	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1347;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.87;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1661,174,0
chrXV	398467	.	A	G	830	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=17.66;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:93:863,93,0
chrXV	398767	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.898;QD=20.31;ReadPosRankSum=1.668;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1130,123,0
chrXV	399016	.	T	C	1306	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=18.66;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1339,150,0
chrXV	399037	.	G	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.22;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1186,129,0
chrXV	399220	.	T	A	1565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.7300;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=0.048;QD=21.74;ReadPosRankSum=1.684;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1598,168,0
chrXV	399289	.	C	T	1492	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.31;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1525,168,0
chrXV	399358	.	T	A	2167	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=91;Dels=0.00;FS=3.058;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;MQRankSum=-1.047;QD=23.81;ReadPosRankSum=1.656;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2200,231,0
chrXV	399526	.	T	C	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.545;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.201;QD=21.03;ReadPosRankSum=1.659;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2031,222,0
chrXV	399654	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.11;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1642,180,0
chrXV	400164	.	T	C	1953	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.71;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1986,219,0
chrXV	400283	.	A	G	1316	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=0.735;QD=19.94;ReadPosRankSum=1.680;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1349,150,0
chrXV	400317	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.69;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1419,159,0
chrXV	400596	.	C	T	1121	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.15;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1154,123,0
chrXV	401275	.	G	A	2250	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.83;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2283,243,0
chrXV	401355	.	C	T	1571	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.14;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1604,174,0
chrXV	401569	.	T	G	2039	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.7545;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.44;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2072,228,0
chrXV	401953	.	G	A	1392	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=8.9197;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.19;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1425,150,0
chrXV	402136	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.2583;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=23.31;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1478,156,0
chrXV	402498	.	A	G	3627.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=23.86;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,150:152:99:3627,390,0
chrXV	402509	.	A	G	3634.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.6396;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=23.60;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3634,405,0
chrXV	402863	.	A	G	2960	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=127;Dels=0.00;FS=3.761;HaplotypeScore=6.7069;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=1.430;QD=23.31;ReadPosRankSum=1.650;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:1,125:127:99:2993,330,0
chrXV	402926	.	A	G	3402.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.978;QD=22.99;ReadPosRankSum=1.709;SB=-1.900e+03	GT:AD:DP:GQ:PL	1/1:1,146:148:99:3402,375,0
chrXV	403168	.	A	G	4124.01	PASS	AC=2;AF=1.00;AN=2;DP=201;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.52;SB=-2.368e+03	GT:AD:DP:GQ:PL	1/1:0,200:201:99:4124,465,0
chrXV	403351	.	T	C	2123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=104;Dels=0.00;FS=4.488;HaplotypeScore=6.6285;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.733;QD=20.41;ReadPosRankSum=1.666;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2156,231,0
chrXV	404137	.	G	T	661	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=13.22;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:75:694,75,0
chrXV	404477	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.53;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1121,120,0
chrXV	404516	.	A	G	1263	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.41;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1296,141,0
chrXV	404582	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.84;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1249,141,0
chrXV	405484	.	A	G	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;MQRankSum=-0.283;QD=15.29;ReadPosRankSum=1.669;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:96:874,96,0
chrXV	405487	.	T	G	891	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.20;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:924,102,0
chrXV	405535	.	T	C	999	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=16.93;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1032,114,0
chrXV	406046	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=3.889;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=0.024;QD=19.20;ReadPosRankSum=1.683;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1396,156,0
chrXV	406136	.	A	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.8682;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.28;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1246,132,0
chrXV	406235	.	C	T	990	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.62;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1023,111,0
chrXV	406391	.	C	T	1187	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.78;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1220,129,0
chrXV	406642	.	A	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.07;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1357,147,0
chrXV	406687	.	A	G	1342	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3441;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=0.377;QD=18.90;ReadPosRankSum=-1.682;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,68:71:99:1375,153,0
chrXV	406857	.	T	C	872	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;DP=48;Dels=0.00;FS=3.072;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.335;QD=18.17;ReadPosRankSum=2.244;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:905,99,0
chrXV	406864	.	G	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.34;MQ0=0;QD=19.71;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1058,117,0
chrXV	406895	.	G	A	1083	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;QD=19.00;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1116,117,0
chrXV	406909	.	C	A	886	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.72;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:919,99,0
chrXV	407036	.	T	C	1533	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=23.95;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1566,174,0
chrXV	407061	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.06;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1532,162,0
chrXV	407249	.	T	C	955	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=17.36;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:988,111,0
chrXV	407771	.	C	T	2460	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=24.36;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2493,264,0
chrXV	407834	.	C	T	2713	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.99;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2746,291,0
chrXV	408255	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.9258;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.75;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1613,171,0
chrXV	408393	.	C	T	59.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.545;DP=69;Dels=0.00;FS=13.826;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;MQRankSum=1.090;QD=0.86;ReadPosRankSum=-4.117;SB=2.49	GT:AD:DP:GQ:PL	1/1:61,8:69:12:92,12,0
chrXV	408514	.	G	T	1492	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=18.89;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1525,159,0
chrXV	408523	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;MQRankSum=0.235;QD=17.29;ReadPosRankSum=1.604;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1451,159,0
chrXV	408953	.	C	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.67;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1485,156,0
chrXV	409147	.	C	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.09;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1140,123,0
chrXV	410304	.	T	A	1465	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.63;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1498,156,0
chrXV	410754	.	G	C	1391	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=21.08;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1424,159,0
chrXV	411250	.	A	G	981	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.452;QD=21.33;ReadPosRankSum=1.657;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1014,108,0
chrXV	411283	.	A	G	665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.211;QD=16.22;ReadPosRankSum=1.648;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:75:698,75,0
chrXV	412174	.	C	T	1054	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.57;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1087,117,0
chrXV	412368	.	T	G	1027	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.2571;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=20.14;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1060,117,0
chrXV	412949	.	C	A	1696	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=26.50;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1729,183,0
chrXV	413171	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.87;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1848,198,0
chrXV	413381	.	C	T	2689	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.38;SB=-1.353e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2722,288,0
chrXV	414091	.	T	A	3162	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.91;SB=-1.651e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3195,333,0
chrXV	414403	.	G	C	4033.01	PASS	AC=2;AF=1.00;AN=2;DP=181;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.28;SB=-2.215e+03	GT:AD:DP:GQ:PL	1/1:0,179:181:99:4033,444,0
chrXV	415035	.	A	C	790	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.37;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:823,93,0
chrXV	415710	.	T	C	1004	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.69;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1037,114,0
chrXV	415987	.	G	C	599	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.11;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:69:632,69,0
chrXV	416148	.	G	A	1435	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8225;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.93;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1468,162,0
chrXV	416506	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.452;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.726;QD=22.02;ReadPosRankSum=1.676;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1398,153,0
chrXV	416886	.	A	G	1449	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.29;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1482,159,0
chrXV	417236	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.66;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1891,198,0
chrXV	417481	.	A	G	1873	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.57;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1906,204,0
chrXV	417628	.	T	C	1087	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.82;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1120,123,0
chrXV	417733	.	T	C	1743	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8842;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.26;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1776,195,0
chrXV	417786	.	C	T	1173	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.51;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1206,129,0
chrXV	418136	.	T	C	1226	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.89;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1259,138,0
chrXV	418236	.	A	T	1239	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=17.96;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1272,135,0
chrXV	418252	.	C	A	1204	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=17.97;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1237,132,0
chrXV	418470	.	T	C	1784	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=22.02;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1817,195,0
chrXV	418840	.	G	A	1634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.1933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.107;QD=22.38;ReadPosRankSum=1.107;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1667,177,0
chrXV	419377	.	A	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.80;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1834,204,0
chrXV	419521	.	G	A	1382	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.68;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1415,147,0
chrXV	419928	.	G	A	1450	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.01;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1483,153,0
chrXV	420094	.	A	G	2779	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.370;DP=124;Dels=0.00;FS=2.883;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.942;QD=22.41;ReadPosRankSum=2.350;SB=-1.383e+03	GT:AD:DP:GQ:PL	1/1:2,122:124:99:2812,303,0
chrXV	420114	.	T	G	3190	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=137;Dels=0.00;FS=3.777;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-1.223;QD=23.28;ReadPosRankSum=1.681;SB=-1.510e+03	GT:AD:DP:GQ:PL	1/1:1,135:137:99:3223,351,0
chrXV	420184	.	T	C	2837	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=134;Dels=0.00;FS=3.013;HaplotypeScore=12.5642;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.470;QD=21.17;ReadPosRankSum=2.394;SB=-1.488e+03	GT:AD:DP:GQ:PL	1/1:2,131:134:99:2870,312,0
chrXV	420277	.	C	T	1853	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.7624;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1886,204,0
chrXV	420513	.	G	C	2056	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.5610;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.64;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2089,231,0
chrXV	421530	.	A	G	1605	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.60;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1638,177,0
chrXV	427406	.	T	C	2007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-1.554;QD=20.69;ReadPosRankSum=1.696;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2040,225,0
chrXV	428444	.	C	T	1821	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.35;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1854,195,0
chrXV	445855	.	T	C	2310	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.58;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2343,255,0
chrXV	445979	.	G	T	3950.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=24.53;SB=-1.790e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3950,420,0
chrXV	445990	.	T	A	3041	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;MQRankSum=0.878;QD=20.69;ReadPosRankSum=1.685;SB=-1.689e+03	GT:AD:DP:GQ:PL	1/1:1,146:147:99:3074,342,0
chrXV	446029	.	C	T	2146	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.4484;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=20.44;SB=-1.327e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2179,231,0
chrXV	446616	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=19.11;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1256,141,0
chrXV	446931	.	C	T	1582	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=20.03;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1615,174,0
chrXV	447012	.	A	G	1401	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.91;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1434,159,0
chrXV	447166	.	A	G	1592	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.51;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1625,186,0
chrXV	447762	.	C	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.68;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1642,180,0
chrXV	448535	.	A	G	309	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=61.34;MQ0=0;QD=13.43;SB=-7.595e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:39:342,39,0
chrXV	448820	.	A	G	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=5.35;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:5:6:58,6,0
chrXV	448985	.	A	G	495	PASS	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.50;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,22:22:60:528,60,0
chrXV	449353	.	A	G	1125	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.06;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1158,129,0
chrXV	449682	.	T	C	1140	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.395;QD=20.00;ReadPosRankSum=1.672;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1173,132,0
chrXV	449867	.	A	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=17.39;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1146,126,0
chrXV	449956	.	A	C	1663	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.672;QD=19.34;ReadPosRankSum=1.691;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1696,186,0
chrXV	450086	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.17;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1319,147,0
chrXV	450301	.	T	C	1023	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=15.04;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1056,117,0
chrXV	450378	.	G	A	1471	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.15;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1504,165,0
chrXV	450461	.	G	A	1684	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.87;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1717,180,0
chrXV	450503	.	G	A	1559	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=21.96;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1592,168,0
chrXV	450987	.	G	A	1640	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.3248;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.03;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1673,183,0
chrXV	451034	.	G	C	1281	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.04;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1314,144,0
chrXV	451052	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=3.949;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;MQRankSum=-1.251;QD=17.07;ReadPosRankSum=0.433;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1262,129,0
chrXV	451367	.	C	A	1901	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.18;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1934,204,0
chrXV	451593	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.47;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1407,153,0
chrXV	451996	.	G	A	2283	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=26.86;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2316,243,0
chrXV	452290	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.67;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1747,183,0
chrXV	452446	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=59;Dels=0.00;FS=3.163;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.135;QD=19.95;ReadPosRankSum=1.673;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1210,132,0
chrXV	453067	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=20.46;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1363,147,0
chrXV	453073	.	G	A	1179	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.407;QD=18.14;ReadPosRankSum=-0.108;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1212,107,0
chrXV	453707	.	T	C	1986	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3130;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.93;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2019,225,0
chrXV	453762	.	C	T	1375	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.48;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1408,153,0
chrXV	455286	.	G	A	1426	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.81;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1459,153,0
chrXV	455417	.	G	A	916	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.81;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:949,105,0
chrXV	455732	.	G	A	1318	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.54;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1351,141,0
chrXV	455922	.	C	T	1802	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=26.12;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1835,189,0
chrXV	455934	.	G	A	1631	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=23.30;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1664,183,0
chrXV	456012	.	C	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.13;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1383,150,0
chrXV	456750	.	C	T	1804	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.43;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1837,192,0
chrXV	457110	.	C	T	1460	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.47;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1493,162,0
chrXV	457188	.	A	T	1508	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=5.740;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.058;QD=25.13;ReadPosRankSum=1.675;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1541,162,0
chrXV	459563	.	A	G	1645	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=22.53;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1678,183,0
chrXV	460233	.	G	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=17.39;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1233,135,0
chrXV	461290	.	C	T	3050	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.48;SB=-1.152e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3083,321,0
chrXV	461316	.	A	T	3911.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=6.5581;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;MQRankSum=0.152;QD=22.87;ReadPosRankSum=1.692;SB=-1.497e+03	GT:AD:DP:GQ:PL	1/1:1,170:171:99:3911,412,0
chrXV	461429	.	A	G	1874	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.350;DP=84;Dels=0.00;FS=20.412;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.578;QD=22.31;ReadPosRankSum=3.308;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:4,80:84:99:1907,210,0
chrXV	461644	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=65;Dels=0.00;FS=5.274;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.083;QD=20.40;ReadPosRankSum=1.624;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1359,147,0
chrXV	462134	.	G	A	980	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.50;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1013,108,0
chrXV	462671	.	G	A	1020	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=18.89;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1053,111,0
chrXV	462906	.	C	G	974	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=17.71;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1007,111,0
chrXV	462984	.	T	A	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.293;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8676;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.586;QD=22.63;ReadPosRankSum=-1.586;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1640,157,0
chrXV	463015	.	A	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.98;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1462,162,0
chrXV	463112	.	A	C	872	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.96;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:905,99,0
chrXV	463185	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.37;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1554,165,0
chrXV	463343	.	T	A	1313	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.04;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1346,141,0
chrXV	463766	.	G	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.02;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1092,114,0
chrXV	463787	.	A	C	1016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.787;QD=23.09;ReadPosRankSum=1.654;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1049,114,0
chrXV	463865	.	G	A	1674	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.62;MQ0=0;QD=20.17;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1707,180,0
chrXV	463870	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=18.01;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1582,177,0
chrXV	463933	.	G	T	1511	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.37;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1544,168,0
chrXV	464189	.	A	G	633	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=44.2815;MLEAC=2;MLEAF=1.00;MQ=29.95;MQ0=0;QD=12.92;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:72:666,72,0
chrXV	464215	.	A	C	827	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=13.56;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:96:860,96,0
chrXV	464238	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.59;MQ0=0;QD=12.39;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:913,99,0
chrXV	464244	.	G	T	903	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=13.28;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:936,99,0
chrXV	464274	.	G	A	1397	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=7.5318;MLEAC=2;MLEAF=1.00;MQ=46.20;MQ0=0;QD=15.02;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1430,156,0
chrXV	464339	.	A	T	1959	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=4.027;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=0.286;QD=21.53;ReadPosRankSum=1.694;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1992,207,0
chrXV	464414	.	A	G	111.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=3.47;SB=-4.061e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:18:144,18,0
chrXV	464415	.	C	G	110.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=3.44;SB=-4.121e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:18:143,18,0
chrXV	464417	.	C	T	113.13	SnpCluster	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=3.54;SB=-4.101e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:18:146,18,0
chrXV	464422	.	C	G	170.03	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=31.94;MQ0=0;QD=4.60;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:24:203,24,0
chrXV	464763	.	G	A	1070	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.84;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1103,123,0
chrXV	464863	.	C	T	772	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.38;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:805,84,0
chrXV	465293	.	A	G	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.21;MQ0=0;MQRankSum=-1.619;QD=20.43;ReadPosRankSum=1.675;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1279,141,0
chrXV	465313	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=17.46;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1203,132,0
chrXV	465319	.	G	A	1260	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=17.75;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1293,135,0
chrXV	465655	.	G	A	875	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=18.23;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:908,102,0
chrXV	465661	.	G	A	838	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=18.22;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:871,99,0
chrXV	466340	.	A	G	2327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=100;Dels=0.00;FS=3.979;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.935;QD=23.27;ReadPosRankSum=1.697;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2360,261,0
chrXV	467149	.	T	A	2298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=113;Dels=0.00;FS=3.207;HaplotypeScore=7.1579;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.119;QD=20.34;ReadPosRankSum=1.671;SB=-1.377e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2331,240,0
chrXV	467239	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.22;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1529,162,0
chrXV	467365	.	G	A	1910	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.99;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1943,207,0
chrXV	467407	.	A	G	1956	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2659;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=22.23;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1989,219,0
chrXV	467910	.	T	A	2049	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=18.80;SB=-1.314e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2082,219,0
chrXV	468214	.	G	C	1844	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.69;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1877,207,0
chrXV	468284	.	G	A	2109	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=21.09;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2142,237,0
chrXV	468336	.	A	G	2004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=-1.116;QD=22.02;ReadPosRankSum=1.694;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2037,219,0
chrXV	468364	.	T	C	2232	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.3573;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.93;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:1,109:112:99:2265,249,0
chrXV	468561	.	A	G	1207	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.449;QD=22.35;ReadPosRankSum=1.668;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1240,132,0
chrXV	468674	.	T	C	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.9339;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.687;QD=20.23;ReadPosRankSum=1.642;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1611,154,0
chrXV	469093	.	C	T	3744.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=8.6299;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.30;SB=-1.430e+03	GT:AD:DP:GQ:PL	1/1:0,148:148:99:3744,390,0
chrXV	469535	.	T	G	2122	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=21.01;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2155,231,0
chrXV	469545	.	C	T	1942	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=18.85;SB=-1.270e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1975,204,0
chrXV	469548	.	G	A	1915	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=18.59;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1948,207,0
chrXV	471040	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5159;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=22.17;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1319,144,0
chrXV	471072	.	G	T	1066	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=20.50;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1099,114,0
chrXV	471091	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=20.35;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1152,129,0
chrXV	471315	.	G	T	1101	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.19;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1134,120,0
chrXV	471329	.	A	G	949	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=15.82;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:982,108,0
chrXV	472668	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.95;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1901,210,0
chrXV	472765	.	A	C	1922	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.595;QD=21.60;ReadPosRankSum=2.090;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:2,87:89:99:1955,216,0
chrXV	473069	.	A	G	2256	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2289,255,0
chrXV	474686	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;MQRankSum=-0.783;QD=17.02;ReadPosRankSum=2.350;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:96:867,96,0
chrXV	474687	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.37;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:867,93,0
chrXV	474753	.	A	G	2122	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.65;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2155,237,0
chrXV	475217	.	C	G	2094	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.52;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2127,231,0
chrXV	475466	.	T	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=24.86;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1823,192,0
chrXV	475554	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.34;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1356,141,0
chrXV	475648	.	C	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.67;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1264,132,0
chrXV	475733	.	A	C	1275	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.98;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1308,144,0
chrXV	475809	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.23;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1450,159,0
chrXV	475840	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.58;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1247,138,0
chrXV	475934	.	A	G	1303	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.86;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1336,150,0
chrXV	476009	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.64;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1656,180,0
chrXV	476109	.	T	A	2077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.254;QD=23.60;ReadPosRankSum=1.692;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2110,234,0
chrXV	476327	.	T	A	1201	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.07;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1234,132,0
chrXV	476375	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=16.33;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1176,126,0
chrXV	476379	.	C	T	1117	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=15.73;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1150,117,0
chrXV	476648	.	A	C	1674	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.57;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1707,183,0
chrXV	477077	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.65;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1313,150,0
chrXV	477401	.	T	C	1121	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.15;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1154,129,0
chrXV	477659	.	A	G	1040	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.67;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1073,117,0
chrXV	477680	.	A	G	896	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.36;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:929,102,0
chrXV	477707	.	T	C	769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=43;Dels=0.00;FS=5.195;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=0.201;QD=17.88;ReadPosRankSum=1.571;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:90:802,90,0
chrXV	477773	.	A	G	746	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.65;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:779,87,0
chrXV	478304	.	G	A	965	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=19.30;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:998,105,0
chrXV	478313	.	A	G	1105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=63;Dels=0.00;FS=3.153;HaplotypeScore=4.8367;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=0.447;QD=17.54;ReadPosRankSum=1.676;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1138,126,0
chrXV	478451	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.9005;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.49;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1605,177,0
chrXV	478577	.	T	C	925	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.02;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:958,108,0
chrXV	478679	.	A	G	1576	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=21.30;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1609,174,0
chrXV	478919	.	C	G	937	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=17.68;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:970,105,0
chrXV	479299	.	T	C	310	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.267;QD=18.24;ReadPosRankSum=2.162;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,15:17:39:343,39,0
chrXV	480090	.	C	T	1003	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.6787;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=15.43;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1036,114,0
chrXV	480144	.	G	A	1207	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.29;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:66:99:1240,132,0
chrXV	480906	.	G	A	1845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;MQRankSum=0.958;QD=21.71;ReadPosRankSum=0.265;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1878,201,0
chrXV	481308	.	C	T	1823	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.4449;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=20.72;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1856,201,0
chrXV	481843	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.64;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1052,114,0
chrXV	482608	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=23.87;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1823,189,0
chrXV	483971	.	C	T	2016	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.65;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2049,213,0
chrXV	484571	.	G	C	2144	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.82;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2177,240,0
chrXV	485031	.	A	G	626	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:72:659,72,0
chrXV	485252	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.412;QD=19.89;ReadPosRankSum=1.604;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1107,123,0
chrXV	485322	.	C	T	927	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=18.18;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:960,105,0
chrXV	485571	.	C	T	1465	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.87;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1498,156,0
chrXV	486108	.	C	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.37;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1292,141,0
chrXV	486135	.	A	G	789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=0;MQRankSum=-0.133;QD=15.17;ReadPosRankSum=1.666;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:90:822,90,0
chrXV	486141	.	G	A	766	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=15.63;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:87:799,87,0
chrXV	486192	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=0.306;QD=16.04;ReadPosRankSum=1.597;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:96:867,96,0
chrXV	486303	.	T	C	1071	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=21.00;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1104,120,0
chrXV	486327	.	T	C	953	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=19.85;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:986,108,0
chrXV	486494	.	C	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9490;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=20.22;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1671,177,0
chrXV	486511	.	G	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=18.12;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1700,192,0
chrXV	487169	.	C	T	3383.01	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.34;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3383,360,0
chrXV	487535	.	A	G	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=-0.957;QD=19.13;ReadPosRankSum=1.681;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1315,144,0
chrXV	487809	.	A	G	1018	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.6721;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;MQRankSum=-1.471;QD=19.21;ReadPosRankSum=1.667;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1051,114,0
chrXV	488780	.	A	G	1720	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=18.49;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,86:93:99:1753,195,0
chrXV	489366	.	T	C	1669	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.528;QD=24.54;ReadPosRankSum=1.681;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1702,183,0
chrXV	489971	.	T	C	442	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.679;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.435;QD=20.09;ReadPosRankSum=2.679;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:3,19:22:51:475,51,0
chrXV	490004	.	T	A	510	filter	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,20:20:57:543,57,0
chrXV	490697	.	G	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.62;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1345,141,0
chrXV	491189	.	A	G	636	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.67;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:669,75,0
chrXV	491190	.	A	G	679	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=18.35;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:78:712,78,0
chrXV	491483	.	C	T	873	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.5006;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=15.87;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:906,96,0
chrXV	491804	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=4.323;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-1.205;QD=21.02;ReadPosRankSum=1.657;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1000,111,0
chrXV	491992	.	G	A	988	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.76;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1021,108,0
chrXV	492191	.	C	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1592,171,0
chrXV	492752	.	A	G	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.112;QD=21.12;ReadPosRankSum=1.687;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1659,180,0
chrXV	492966	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.72;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1711,183,0
chrXV	493091	.	T	C	1131	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.18;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1164,126,0
chrXV	493912	.	C	T	882	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.00;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:915,99,0
chrXV	493975	.	T	C	1031	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.48;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1064,117,0
chrXV	494173	.	C	G	1800	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.43;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,81:84:99:1833,204,0
chrXV	494571	.	A	G	2106	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.85;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2139,237,0
chrXV	494600	.	G	C	1501	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=17.45;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1534,168,0
chrXV	495846	.	G	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1289,138,0
chrXV	496482	.	G	A	1509	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.34;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1542,165,0
chrXV	497271	.	A	G	409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.377;QD=17.78;ReadPosRankSum=1.432;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:1,22:23:48:442,48,0
chrXV	497734	.	C	T	1786	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=25.88;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1819,192,0
chrXV	497758	.	A	G	1743	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=4.713;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=0.421;QD=23.55;ReadPosRankSum=1.639;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1776,192,0
chrXV	498901	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.632;QD=21.56;ReadPosRankSum=1.691;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1887,213,0
chrXV	499672	.	T	C	1544	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.39;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1577,171,0
chrXV	500020	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.26;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1828,198,0
chrXV	500665	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.49;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1553,171,0
chrXV	500968	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.30;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1371,144,0
chrXV	501109	.	C	G	1553	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.8584;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.66;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1586,174,0
chrXV	501151	.	G	T	1946	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.70;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1979,207,0
chrXV	501415	.	G	A	1702	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.82;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1735,192,0
chrXV	501598	.	C	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.8545;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.29;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1636,174,0
chrXV	501943	.	G	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.27;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1662,174,0
chrXV	502691	.	C	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.48;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1404,150,0
chrXV	503906	.	G	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.66;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1134,123,0
chrXV	503975	.	T	C	1114	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=50;Dels=0.00;FS=3.100;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.733;QD=22.28;ReadPosRankSum=2.350;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:2,47:50:99:1147,126,0
chrXV	504738	.	A	C	1318	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=19.10;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1351,147,0
chrXV	504755	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.328;QD=18.91;ReadPosRankSum=1.685;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1432,159,0
chrXV	505083	.	T	C	1662	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.8910;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.77;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1695,183,0
chrXV	505165	.	C	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.7765;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.16;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1626,174,0
chrXV	505525	.	C	T	1322	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.66;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1355,141,0
chrXV	505541	.	C	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=18.60;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1484,165,0
chrXV	506885	.	G	A	1907	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.01;FS=0.000;HaplotypeScore=19.3510;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.17;SB=-2.340e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1940,222,0
chrXV	507317	.	A	G	2083	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.70;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2116,234,0
chrXV	507362	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=17.38;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1302,141,0
chrXV	507581	.	A	G	2213	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.4583;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=-1.331;QD=22.81;ReadPosRankSum=1.659;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:1,94:97:99:2246,240,0
chrXV	508274	.	G	A	1652	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=14.88;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,109:111:99:1685,177,0
chrXV	508305	.	G	A	1811	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=17.75;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1844,195,0
chrXV	508404	.	A	C	1481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5404;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=1.347;QD=18.28;ReadPosRankSum=1.689;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1514,168,0
chrXV	508868	.	A	G	1387	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.7653;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=16.13;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1420,153,0
chrXV	509109	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.84;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1344,147,0
chrXV	509653	.	C	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.56;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1128,120,0
chrXV	509814	.	C	T	827	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.80;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:860,90,0
chrXV	510635	.	C	G	1308	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1341,144,0
chrXV	511443	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=37.2875;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=-1.209;QD=23.74;ReadPosRankSum=1.471;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1291,141,0
chrXV	511893	.	C	T	1041	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.15;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1074,114,0
chrXV	512729	.	A	C	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=3.062;HaplotypeScore=5.1020;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-0.019;QD=23.19;ReadPosRankSum=2.296;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1517,165,0
chrXV	513625	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=19.95;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1350,153,0
chrXV	514126	.	A	G	1245	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.15;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1278,144,0
chrXV	514366	.	C	T	1896	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.57;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,80:84:99:1929,201,0
chrXV	514405	.	G	T	1882	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.4269;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.02;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1915,201,0
chrXV	514607	.	A	G	1115	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.8773;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.22;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1148,126,0
chrXV	514625	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.95;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1311,135,0
chrXV	514715	.	T	C	1467	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.3345;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.57;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,66:68:99:1500,165,0
chrXV	514804	.	G	T	1602	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.2845;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.54;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1635,180,0
chrXV	514962	.	G	A	851	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=15.47;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:96:884,96,0
chrXV	516270	.	C	T	1921	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=20.88;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1954,207,0
chrXV	516880	.	G	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.70;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1215,132,0
chrXV	517100	.	A	T	973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=49;Dels=0.00;FS=3.285;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.672;QD=19.86;ReadPosRankSum=1.662;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1006,108,0
chrXV	517216	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.9535;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.57;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1203,132,0
chrXV	517514	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.229;QD=21.45;ReadPosRankSum=1.602;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1170,132,0
chrXV	517639	.	G	A	2219	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.80;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2252,234,0
chrXV	517857	.	A	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.71;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1545,168,0
chrXV	518151	.	A	G	2148	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=91;Dels=0.00;FS=4.723;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.603;QD=23.60;ReadPosRankSum=1.693;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:2181,240,0
chrXV	518743	.	G	A	1061	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=17.11;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1094,117,0
chrXV	518744	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=17.82;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1138,120,0
chrXV	519651	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.03;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1694,186,0
chrXV	520009	.	G	A	1795	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.60;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1828,192,0
chrXV	520142	.	G	C	836	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=17.79;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:869,96,0
chrXV	520264	.	T	A	860	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=22.05;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:93:893,93,0
chrXV	520292	.	T	C	734	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.82;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:767,84,0
chrXV	520321	.	C	G	499	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=17.21;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,28:29:60:532,60,0
chrXV	520339	.	A	T	638	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=18.23;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:75:671,75,0
chrXV	520515	.	T	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.92;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1581,177,0
chrXV	520674	.	C	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=21.09;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1509,171,0
chrXV	520701	.	A	T	1092	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=19.85;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1125,123,0
chrXV	520869	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.67;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1356,144,0
chrXV	521161	.	C	T	1487	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.78;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1520,159,0
chrXV	521214	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7734;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=17.55;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1437,159,0
chrXV	521442	.	G	C	904	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=16.14;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:937,105,0
chrXV	521727	.	T	C	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.619;QD=20.41;ReadPosRankSum=1.670;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1176,132,0
chrXV	521781	.	A	G	1222	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=3.153;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.838;QD=19.71;ReadPosRankSum=1.676;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1255,141,0
chrXV	521864	.	C	T	1251	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.86;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1284,135,0
chrXV	522050	.	A	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.05;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1336,144,0
chrXV	523000	.	G	A	1055	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.10;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1088,114,0
chrXV	523446	.	C	A	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;DP=78;Dels=0.00;FS=39.030;HaplotypeScore=7.1879;MLEAC=1;MLEAF=0.500;MQ=54.59;MQ0=2;MQRankSum=-5.656;QD=0.28;ReadPosRankSum=-2.055;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:63,15:78:52:52,0,1240
chrXV	523506	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=20.50;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1345,147,0
chrXV	523527	.	C	T	20.05	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DP=55;Dels=0.00;FS=16.165;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=54.79;MQ0=0;MQRankSum=-4.175;QD=0.36;ReadPosRankSum=-2.928;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,10:55:50:50,0,867
chrXV	523782	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=1;QD=18.26;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1311,138,0
chrXV	524711	.	T	A	1158	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.17;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1191,126,0
chrXV	525016	.	T	C	861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.2234;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.564;QD=20.50;ReadPosRankSum=0.972;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:1,40:42:99:894,99,0
chrXV	525568	.	T	C	441	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=26;Dels=0.00;FS=4.150;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.667;QD=16.96;ReadPosRankSum=1.467;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:1,25:26:54:474,54,0
chrXV	525601	.	T	C	630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;DP=30;Dels=0.00;FS=3.163;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.291;QD=21.00;ReadPosRankSum=2.286;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:2,28:30:72:663,72,0
chrXV	525838	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-1.299;QD=21.01;ReadPosRankSum=1.684;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:1,71:74:99:1588,174,0
chrXV	525850	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=20.97;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1564,168,0
chrXV	525919	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=22.14;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1494,168,0
chrXV	526210	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=18.40;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1358,141,0
chrXV	526225	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.69;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1285,141,0
chrXV	526390	.	T	C	1847	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.52;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1880,204,0
chrXV	526435	.	C	T	2046	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=23.79;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2079,225,0
chrXV	527017	.	A	G	1427	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.62;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1460,162,0
chrXV	527323	.	T	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.17;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1284,141,0
chrXV	527497	.	G	C	1842	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.42;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1875,207,0
chrXV	527986	.	C	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.42;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,43:45:99:1042,114,0
chrXV	528085	.	G	T	507	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.11;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:57:540,57,0
chrXV	528237	.	C	T	1108	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.79;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1141,123,0
chrXV	528295	.	T	C	1557	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.93;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1590,177,0
chrXV	528477	.	C	T	427	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=15.25;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:51:460,51,0
chrXV	528487	.	C	T	487	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=17.39;SB=-1.750e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:54:520,54,0
chrXV	528834	.	G	A	2171	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.14;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2204,228,0
chrXV	529414	.	T	C	1558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.7605;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=0.610;QD=21.05;ReadPosRankSum=1.635;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,70:74:99:1591,177,0
chrXV	529807	.	G	C	2028	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.29;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2061,231,0
chrXV	530063	.	G	A	803	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=14.87;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:93:836,93,0
chrXV	530086	.	G	A	955	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.27;MQ0=0;QD=17.36;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:988,105,0
chrXV	530092	.	C	T	952	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.80;MQ0=0;QD=15.61;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:985,111,0
chrXV	530757	.	G	A	1869	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.00;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1902,201,0
chrXV	530922	.	A	G	1549	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.86;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1582,171,0
chrXV	530929	.	C	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=20.35;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1620,168,0
chrXV	530989	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.52;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1613,174,0
chrXV	531034	.	A	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.14;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1201,132,0
chrXV	531149	.	G	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.96;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1065,111,0
chrXV	531285	.	G	A	954	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=22.19;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:987,105,0
chrXV	531376	.	T	A	967	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=21.49;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1000,105,0
chrXV	531651	.	G	A	922	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.95;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:955,102,0
chrXV	532110	.	C	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.85;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1513,159,0
chrXV	532134	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.58;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1580,174,0
chrXV	532438	.	G	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.21;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1543,174,0
chrXV	532911	.	G	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.09;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1178,123,0
chrXV	533224	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=65;Dels=0.00;FS=9.448;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.485;QD=20.88;ReadPosRankSum=2.736;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:3,62:65:99:1390,156,0
chrXV	533398	.	A	C	966	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.23;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:999,111,0
chrXV	533423	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.82;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1386,147,0
chrXV	533487	.	T	C	2105	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.39;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2138,240,0
chrXV	533520	.	A	G	1856	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=5.728;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.410;QD=21.58;ReadPosRankSum=1.692;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1889,210,0
chrXV	533636	.	T	C	1450	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=61.2655;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=21.64;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1483,162,0
chrXV	533847	.	C	A	2389	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7933;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.12;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2422,264,0
chrXV	533983	.	T	C	1268	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=22.25;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1301,144,0
chrXV	534242	.	A	G	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.840;DP=83;Dels=0.00;FS=5.985;HaplotypeScore=8.1284;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-0.370;QD=19.87;ReadPosRankSum=2.914;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:3,79:83:99:1682,183,0
chrXV	534977	.	G	T	2179	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.18;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2212,240,0
chrXV	535001	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.85;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2065,228,0
chrXV	538230	.	G	A	2245	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.80;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2278,240,0
chrXV	538714	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.192;QD=22.59;ReadPosRankSum=0.797;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1456,159,0
chrXV	540873	.	A	G	1129	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.21;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1162,129,0
chrXV	540930	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3194;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=16.11;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1354,147,0
chrXV	540998	.	C	T	2058	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.44;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2091,225,0
chrXV	541182	.	G	A	1983	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.44;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2016,213,0
chrXV	541377	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.8845;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.76;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1694,183,0
chrXV	541674	.	C	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.92;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1589,168,0
chrXV	541939	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.27;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1414,159,0
chrXV	542472	.	T	G	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.290;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=-0.272;QD=20.86;ReadPosRankSum=2.386;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:99:1660,186,0
chrXV	542699	.	A	G	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.986;QD=20.31;ReadPosRankSum=1.679;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1353,147,0
chrXV	542841	.	T	C	2035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.017;QD=20.35;ReadPosRankSum=1.697;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:1,98:100:99:2068,225,0
chrXV	542889	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.8496;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=19.14;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1813,201,0
chrXV	542952	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.658;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.957;QD=21.45;ReadPosRankSum=1.687;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1663,189,0
chrXV	543081	.	T	C	1213	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.89;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1246,135,0
chrXV	543282	.	C	T	1579	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=20.51;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1612,168,0
chrXV	543965	.	A	T	1393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.878;QD=19.08;ReadPosRankSum=1.685;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1426,153,0
chrXV	547232	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.12;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1559,174,0
chrXV	551813	.	G	A	2335	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=24.07;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2368,246,0
chrXV	551830	.	G	A	2250	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=22.50;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2283,237,0
chrXV	552069	.	C	T	4337.01	PASS	AC=2;AF=1.00;AN=2;DP=191;Dels=0.00;FS=0.000;HaplotypeScore=11.7134;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.71;SB=-2.382e+03	GT:AD:DP:GQ:PL	1/1:0,191:191:99:4337,454,0
chrXV	552421	.	A	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=18.55;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1851,198,0
chrXV	552775	.	C	G	1632	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.99;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1665,177,0
chrXV	553072	.	A	G	1283	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.374;QD=22.12;ReadPosRankSum=1.673;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1316,147,0
chrXV	553085	.	C	T	1490	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.24;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1523,168,0
chrXV	553150	.	T	C	1550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.873;DP=71;Dels=0.00;FS=6.186;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.100;QD=21.83;ReadPosRankSum=2.901;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:3,68:71:99:1583,177,0
chrXV	553386	.	C	T	660	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=12.69;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:75:693,75,0
chrXV	553950	.	C	T	1409	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1442,159,0
chrXV	554076	.	G	A	932	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.58;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:965,108,0
chrXV	554117	.	T	C	1156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.128;DP=70;Dels=0.00;FS=6.748;HaplotypeScore=8.4652;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;MQRankSum=-1.699;QD=16.51;ReadPosRankSum=2.379;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:2,67:70:99:1189,132,0
chrXV	556870	.	T	G	1444	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.56;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1477,159,0
chrXV	557021	.	T	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.6214;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.47;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1858,195,0
chrXV	557194	.	T	G	1195	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.60;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1228,132,0
chrXV	557623	.	T	C	1160	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.2194;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.48;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1193,132,0
chrXV	557722	.	T	C	655	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.485;DP=42;Dels=0.00;FS=3.010;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.733;QD=15.60;ReadPosRankSum=1.568;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:75:688,75,0
chrXV	557758	.	A	G	927	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=20.15;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:960,105,0
chrXV	557821	.	T	G	1434	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.78;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1467,162,0
chrXV	557831	.	G	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.91;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1586,165,0
chrXV	558155	.	G	C	1878	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.47;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1911,201,0
chrXV	558381	.	T	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.89;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1178,129,0
chrXV	558497	.	G	A	1552	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.90;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1585,165,0
chrXV	558913	.	G	C	3132	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=7.7910;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=21.60;SB=-1.623e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:3165,342,0
chrXV	558953	.	G	A	2683	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=12.7671;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.46;SB=-1.308e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2716,288,0
chrXV	559459	.	T	C	1011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;MQRankSum=0.642;QD=18.72;ReadPosRankSum=1.604;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1044,117,0
chrXV	559465	.	C	T	1013	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.04;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=18.42;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1046,108,0
chrXV	559477	.	T	C	953	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=18.33;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:986,108,0
chrXV	559714	.	T	A	1023	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9353;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.31;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1056,114,0
chrXV	559768	.	T	G	1234	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.5017;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=21.65;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1267,141,0
chrXV	560189	.	T	A	1439	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.19;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1472,153,0
chrXV	560432	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.37;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1331,153,0
chrXV	560610	.	A	G	1785	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.88;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1818,198,0
chrXV	560807	.	A	G	633	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;DP=55;Dels=0.02;FS=2.619;HaplotypeScore=41.4255;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=-1.260;QD=11.51;ReadPosRankSum=2.038;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:75:666,75,0
chrXV	561511	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.4208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.65;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1700,180,0
chrXV	561875	.	C	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.02;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1114,117,0
chrXV	562082	.	C	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.67;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1108,117,0
chrXV	562162	.	C	T	493	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.90;SB=-2.630e+02	GT:AD:DP:GQ:PL	1/1:0,29:31:54:526,54,0
chrXV	562357	.	G	A	900	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.93;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:933,99,0
chrXV	562468	.	A	G	815	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=23.29;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:93:848,93,0
chrXV	562567	.	C	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.48;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1674,174,0
chrXV	562672	.	G	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=21.07;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1466,165,0
chrXV	562688	.	A	C	1344	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=5.576;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.400;QD=20.68;ReadPosRankSum=1.679;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1377,153,0
chrXV	562828	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.46;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1299,132,0
chrXV	562856	.	T	G	1085	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=55;Dels=0.00;FS=6.438;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.160;QD=19.73;ReadPosRankSum=2.359;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:2,52:55:99:1118,123,0
chrXV	563008	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.69;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1486,159,0
chrXV	563766	.	T	C	1707	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=25.86;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1740,186,0
chrXV	563862	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=67;Dels=0.00;FS=9.810;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.055;QD=19.93;ReadPosRankSum=2.376;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1368,147,0
chrXV	563917	.	G	A	1341	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.29;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1374,144,0
chrXV	563945	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;MQRankSum=-1.732;QD=20.48;ReadPosRankSum=1.681;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1446,156,0
chrXV	564207	.	T	G	3818.01	PASS	AC=2;AF=1.00;AN=2;DP=173;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.07;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,173:173:99:3818,429,0
chrXV	564208	.	C	A	4137.01	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=24.48;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,169:169:99:4137,421,0
chrXV	564258	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=16.61;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1262,132,0
chrXV	564299	.	G	C	1217	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7432;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=18.72;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1250,138,0
chrXV	564451	.	A	G	4254.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=202;Dels=0.00;FS=2.913;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=-0.056;QD=21.06;ReadPosRankSum=2.413;SB=-2.206e+03	GT:AD:DP:GQ:PL	1/1:2,197:202:99:4254,468,0
chrXV	564575	.	C	T	2220	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=24.13;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2253,234,0
chrXV	565820	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.0057;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1450,159,0
chrXV	565891	.	T	C	2496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.044;QD=20.97;ReadPosRankSum=1.703;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2529,279,0
chrXV	566126	.	T	A	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.288;DP=62;Dels=0.00;FS=2.884;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-0.182;QD=21.39;ReadPosRankSum=2.369;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:2,59:62:99:1359,150,0
chrXV	566165	.	T	C	1551	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.85;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1584,171,0
chrXV	566210	.	A	G	1797	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9820;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.66;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1830,201,0
chrXV	566277	.	C	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8447;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.80;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2213,231,0
chrXV	566353	.	G	A	1814	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=19.30;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1847,192,0
chrXV	566373	.	A	C	1686	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=20.56;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1719,183,0
chrXV	566430	.	G	T	1455	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=17.74;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1488,156,0
chrXV	566502	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;DP=81;Dels=0.00;FS=2.602;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.313;QD=20.14;ReadPosRankSum=2.913;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:3,78:81:99:1664,186,0
chrXV	566542	.	A	C	1590	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.451;QD=21.49;ReadPosRankSum=1.685;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1623,177,0
chrXV	566564	.	A	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.95;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1701,192,0
chrXV	566820	.	A	T	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=3.507;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.094;QD=20.73;ReadPosRankSum=1.685;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1588,174,0
chrXV	567085	.	T	C	1621	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.52;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1654,180,0
chrXV	567262	.	G	A	579	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.98;MQ0=0;QD=17.03;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:612,66,0
chrXV	567267	.	C	T	537	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.92;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:60:570,60,0
chrXV	567276	.	A	G	490	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=14.00;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:57:523,57,0
chrXV	567367	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.3240;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.86;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1199,126,0
chrXV	568141	.	T	C	1748	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=87;Dels=0.00;FS=3.713;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.135;QD=20.09;ReadPosRankSum=1.692;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1781,192,0
chrXV	568707	.	G	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7794;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.84;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1586,168,0
chrXV	569058	.	T	A	1625	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0795;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.47;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1658,180,0
chrXV	569259	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=19.64;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1702,186,0
chrXV	569690	.	G	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=79.6848;MLEAC=2;MLEAF=1.00;MQ=46.96;MQ0=0;QD=11.47;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1054,111,0
chrXV	569770	.	C	T	1164	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.40;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1197,129,0
chrXV	569787	.	A	G	1108	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=21.31;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1141,123,0
chrXV	569825	.	C	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.11;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1521,165,0
chrXV	570373	.	A	T	998	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.18;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1031,108,0
chrXV	571079	.	T	C	2406	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=2.5606;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.13;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2439,273,0
chrXV	571108	.	C	T	1994	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.66;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2027,213,0
chrXV	571256	.	A	C	3080	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=14.3992;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.206;QD=20.26;ReadPosRankSum=2.417;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:2,147:152:99:3113,333,0
chrXV	571300	.	G	T	4551.01	PASS	AC=2;AF=1.00;AN=2;DP=200;Dels=0.00;FS=0.000;HaplotypeScore=17.1329;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.76;SB=-2.292e+03	GT:AD:DP:GQ:PL	1/1:1,199:200:99:4551,483,0
chrXV	571406	.	A	G	2657	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.659;DP=127;Dels=0.00;FS=12.307;HaplotypeScore=9.7927;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.707;QD=20.92;ReadPosRankSum=2.945;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:3,124:127:99:2690,297,0
chrXV	571487	.	G	A	2505	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=10.8085;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.72;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2538,285,0
chrXV	571939	.	G	A	1914	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=18.58;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:1947,201,0
chrXV	571945	.	C	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.44;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1690,180,0
chrXV	572041	.	G	A	2157	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=20.16;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2190,234,0
chrXV	572098	.	G	A	2666	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.02;FS=0.000;HaplotypeScore=6.8343;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;QD=20.05;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,125:130:99:2699,282,0
chrXV	572102	.	C	T	2628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.548;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=15.8146;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=-0.622;QD=19.32;ReadPosRankSum=2.904;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:3,133:136:99:2661,282,0
chrXV	572407	.	T	C	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=3.590;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=-1.732;QD=20.70;ReadPosRankSum=1.678;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,63:66:99:1399,156,0
chrXV	572419	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=21.60;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1502,168,0
chrXV	572941	.	A	G	1573	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.4972;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=18.08;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1606,183,0
chrXV	573228	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=18.39;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1412,156,0
chrXV	573248	.	A	G	1048	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=16.63;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1081,120,0
chrXV	573308	.	G	A	720	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.49;MQ0=0;QD=12.86;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:78:753,78,0
chrXV	573312	.	T	C	682	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=38.13;MQ0=0;QD=12.63;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:81:715,81,0
chrXV	573324	.	A	T	733	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.82;MQ0=0;QD=12.42;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:81:766,81,0
chrXV	573344	.	G	A	860	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=13.03;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:93:893,93,0
chrXV	573358	.	A	G	751	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.629;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;MQRankSum=-1.112;QD=11.21;ReadPosRankSum=1.681;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:84:784,84,0
chrXV	573377	.	A	G	711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=-1.204;QD=11.85;ReadPosRankSum=1.674;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:78:744,78,0
chrXV	573378	.	A	G	699	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=11.85;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:78:732,78,0
chrXV	573442	.	C	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.31;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1269,132,0
chrXV	574266	.	A	T	1448	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.28;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1481,153,0
chrXV	574378	.	G	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.60;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1619,171,0
chrXV	574716	.	C	T	1062	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.12;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1095,117,0
chrXV	574776	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=18.23;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1218,135,0
chrXV	574821	.	C	T	1634	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=17.57;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1667,183,0
chrXV	575617	.	T	C	168.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=1;MLEAF=0.500;MQ=15.94;MQ0=40;MQRankSum=0.111;QD=2.18;ReadPosRankSum=0.557;SB=-9.001e+01	GT:AD:DP:GQ:PL	0/1:46,30:77:99:198,0,309
chrXV	577242	.	C	T	164.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;DP=60;Dels=0.00;FS=43.850;HaplotypeScore=5.9160;MLEAC=1;MLEAF=0.500;MQ=25.31;MQ0=0;MQRankSum=4.541;QD=2.73;ReadPosRankSum=-1.639;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:45,15:60:99:194,0,718
chrXV	577461	.	C	T	1196.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.065;DP=75;Dels=0.00;FS=183.229;HaplotypeScore=7.0741;MLEAC=1;MLEAF=0.500;MQ=28.07;MQ0=0;MQRankSum=5.410;QD=15.95;ReadPosRankSum=-1.162;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:21,54:75:99:1226,0,102
chrXV	577509	.	A	G	16.11	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;DP=61;Dels=0.00;FS=104.214;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=26.91;MQ0=7;MQRankSum=-4.172;QD=0.26;ReadPosRankSum=-0.281;SB=-2.982e+00	GT:AD:DP:GQ:PL	0/1:44,17:61:46:46,0,933
chrXV	577639	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=21.48;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1193,132,0
chrXV	577787	.	G	C	2127	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.2378;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=23.12;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2160,237,0
chrXV	577827	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=5.0754;MLEAC=2;MLEAF=1.00;MQ=53.34;MQ0=0;QD=22.01;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1684,177,0
chrXV	577890	.	C	T	1214	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=21.68;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1247,132,0
chrXV	577985	.	G	T	2217	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=23.59;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2250,237,0
chrXV	577992	.	G	T	2153	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=23.40;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2186,231,0
chrXV	578058	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=10.4296;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=19.90;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1744,180,0
chrXV	578644	.	T	C	2137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-1.167;QD=21.59;ReadPosRankSum=1.661;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:1,97:99:99:2170,240,0
chrXV	578704	.	A	T	2118	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.77;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2151,228,0
chrXV	578986	.	T	C	1604	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.23;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1637,180,0
chrXV	579050	.	T	C	2006	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.80;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2039,225,0
chrXV	579079	.	A	G	1814	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=2.892;HaplotypeScore=5.0148;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;MQRankSum=0.067;QD=19.72;ReadPosRankSum=2.316;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1847,198,0
chrXV	579389	.	A	G	1771	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-0.901;QD=23.61;ReadPosRankSum=1.686;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1804,198,0
chrXV	580144	.	T	A	310	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.434;QD=19.37;ReadPosRankSum=1.519;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:1,15:16:39:343,39,0
chrXV	580206	.	A	G	841	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.48;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:96:874,96,0
chrXV	580333	.	C	G	965	filter	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=24.12;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,39:40:99:998,108,0
chrXV	580495	.	G	A	1311	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1726;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.85;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1344,144,0
chrXV	580579	.	T	C	901	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=14.77;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:934,102,0
chrXV	580595	.	T	C	655	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=12.84;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:75:688,75,0
chrXV	580924	.	G	A	1636	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=21.53;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1669,174,0
chrXV	581173	.	G	A	1246	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.78;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1279,135,0
chrXV	581278	.	A	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5673;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=22.35;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1821,195,0
chrXV	581305	.	G	A	1630	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=21.45;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1663,183,0
chrXV	581450	.	T	C	1119	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.98;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1152,126,0
chrXV	581692	.	A	G	790	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=15.0968;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=16.12;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,45:49:93:823,93,0
chrXV	581732	.	G	A	1804	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.0045;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.27;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1837,213,0
chrXV	581870	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=4.337;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-1.246;QD=23.05;ReadPosRankSum=1.672;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1347,150,0
chrXV	582005	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=19.48;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1221,126,0
chrXV	582590	.	G	A	1050	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=21.43;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1083,114,0
chrXV	582755	.	T	C	1223	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.41;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1256,141,0
chrXV	582812	.	G	C	1491	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.44;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1524,168,0
chrXV	584081	.	T	C	1712	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=24.81;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1745,186,0
chrXV	585188	.	A	G	911	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=18.59;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:944,102,0
chrXV	585293	.	A	G	1102	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;MQRankSum=-1.325;QD=16.21;ReadPosRankSum=1.681;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1135,126,0
chrXV	585314	.	T	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.48;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1569,171,0
chrXV	585607	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.86;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1301,141,0
chrXV	585644	.	T	C	1491	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=22.59;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1524,168,0
chrXV	585683	.	T	C	1523	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=18.80;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1556,168,0
chrXV	585728	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=18.42;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1525,171,0
chrXV	585808	.	T	C	870	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=16.11;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:903,99,0
chrXV	585817	.	C	T	824	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=51.62;MQ0=0;QD=13.97;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:96:857,96,0
chrXV	585970	.	T	C	1683	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.110;DP=83;Dels=0.00;FS=6.165;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.183;QD=20.28;ReadPosRankSum=2.916;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:3,80:83:99:1716,166,0
chrXV	586076	.	A	T	1035	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.79;MQ0=0;MQRankSum=-0.577;QD=13.80;ReadPosRankSum=1.686;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1068,111,0
chrXV	586108	.	C	T	741	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=11.58;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:84:774,84,0
chrXV	586109	.	G	A	679	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.21;MQ0=0;QD=11.13;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:81:712,81,0
chrXV	586143	.	G	A	693	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.83;MQ0=0;QD=12.16;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:75:726,75,0
chrXV	586164	.	T	C	585	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=13.00;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:69:618,69,0
chrXV	586304	.	T	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=16.62;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1180,132,0
chrXV	586402	.	T	C	1555	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.01;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1588,174,0
chrXV	586600	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.00;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1089,117,0
chrXV	586839	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.97;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1549,171,0
chrXV	587316	.	C	T	1608	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6417;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.48;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,84:87:99:1641,180,0
chrXV	587394	.	T	C	1286	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.09;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1319,147,0
chrXV	587428	.	A	G	1061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.4199;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.668;QD=19.29;ReadPosRankSum=-0.064;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:1,53:55:99:1094,120,0
chrXV	587565	.	C	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.42;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2024,222,0
chrXV	588202	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6001;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.577;QD=20.72;ReadPosRankSum=1.684;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1525,168,0
chrXV	588756	.	G	A	1517	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.23;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1550,171,0
chrXV	589105	.	C	T	1492	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.44;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1525,159,0
chrXV	589248	.	G	A	1278	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.29;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1311,138,0
chrXV	589621	.	A	G	1961	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=20.86;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1994,213,0
chrXV	589839	.	C	T	1134	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=19.55;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1167,123,0
chrXV	589882	.	C	T	1135	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.94;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1168,123,0
chrXV	589883	.	G	T	1135	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.88;MQ0=0;QD=16.94;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1168,123,0
chrXV	590260	.	A	T	1111	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.3445;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.49;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1144,120,0
chrXV	590578	.	C	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=21.27;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1586,171,0
chrXV	591118	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=21.42;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1297,135,0
chrXV	591121	.	A	G	1261	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=20.67;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1294,138,0
chrXV	591751	.	C	T	905	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=17.08;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,50:53:99:938,99,0
chrXV	592863	.	T	G	1243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;DP=59;Dels=0.00;FS=9.853;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.277;QD=21.07;ReadPosRankSum=2.322;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:2,56:59:99:1276,138,0
chrXV	592893	.	C	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=24.56;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1384,144,0
chrXV	592988	.	T	C	2064	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=19.66;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2097,228,0
chrXV	593004	.	G	T	2316	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.44;SB=-1.306e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2349,246,0
chrXV	593104	.	C	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1547,165,0
chrXV	593326	.	G	A	1184	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=17.41;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1217,129,0
chrXV	593587	.	A	G	680	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=20.00;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:78:713,78,0
chrXV	594122	.	G	A	2350	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=22.82;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2383,249,0
chrXV	594267	.	C	T	2974	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=21.40;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3007,327,0
chrXV	594303	.	A	G	180.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.455;DP=92;Dels=0.00;FS=1.466;HaplotypeScore=75.2380;MLEAC=2;MLEAF=1.00;MQ=44.77;MQ0=0;MQRankSum=1.199;QD=1.96;ReadPosRankSum=-5.403;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:79,13:92:27:213,27,0
chrXV	594439	.	T	A	2411	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=44.95;MQ0=0;QD=20.78;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2444,267,0
chrXV	594452	.	C	G	2296	SnpCluster	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=21.66;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2329,252,0
chrXV	594454	.	C	G	2233	SnpCluster	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.68;MQ0=0;QD=21.27;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2266,252,0
chrXV	594455	.	G	C	2320	SnpCluster	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.99;MQ0=0;QD=21.68;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2353,258,0
chrXV	594499	.	G	C	2106	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;QD=21.71;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2139,234,0
chrXV	594586	.	G	A	2073	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.73;MQ0=0;QD=24.10;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2106,222,0
chrXV	594667	.	A	G	809	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.80;MQ0=0;QD=21.86;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:93:842,93,0
chrXV	594673	.	T	C	694	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.62;MQ0=0;QD=18.26;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,36:38:81:727,81,0
chrXV	594677	.	G	A	795	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.14;MQ0=0;QD=20.92;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:87:828,87,0
chrXV	594684	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.35;MQ0=0;QD=21.54;SB=-6.201e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1024,111,0
chrXV	594720	.	A	C	875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.81;MQ0=0;MQRankSum=0.254;QD=19.89;ReadPosRankSum=2.338;SB=-2.110e+02	GT:AD:DP:GQ:PL	1/1:2,42:44:99:908,105,0
chrXV	594737	.	C	T	932	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=22.73;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:965,102,0
chrXV	594821	.	T	C	374	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=1;QD=14.38;SB=-6.656e-03	GT:AD:DP:GQ:PL	1/1:1,23:26:48:407,48,0
chrXV	600757	.	C	A	284	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.600;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.66;MQ0=0;MQRankSum=0.933;QD=10.14;ReadPosRankSum=-1.733;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:1,25:28:33:317,33,0
chrXV	600787	.	T	C	809	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.12;MQ0=0;QD=19.26;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:842,93,0
chrXV	600843	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.77;MQ0=0;QD=18.00;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:843,93,0
chrXV	600945	.	A	G	1186	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=25.78;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1219,132,0
chrXV	601015	.	G	A	832	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=18.09;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:865,96,0
chrXV	601255	.	C	T	1428	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.00;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1461,159,0
chrXV	601307	.	C	T	1275	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.24;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1308,138,0
chrXV	601325	.	C	G	1351	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=18.26;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1384,156,0
chrXV	601382	.	T	A	1877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=4.228;HaplotypeScore=6.2602;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;MQRankSum=-1.116;QD=20.86;ReadPosRankSum=1.694;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1910,201,0
chrXV	601569	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=21.87;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1433,153,0
chrXV	601702	.	C	G	2688	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=23.58;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2721,294,0
chrXV	601746	.	C	T	2547	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=24.03;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2580,270,0
chrXV	601761	.	A	G	2037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=3.212;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;MQRankSum=-1.378;QD=22.63;ReadPosRankSum=1.693;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:1,88:90:99:2070,225,0
chrXV	602229	.	G	A	2139	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.5221;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.77;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2172,228,0
chrXV	602449	.	G	C	1942	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.4875;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.85;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1975,216,0
chrXV	602578	.	A	G	1558	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.34;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1591,174,0
chrXV	602664	.	T	C	2076	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=3.297;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=0.885;QD=22.09;ReadPosRankSum=1.695;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2109,234,0
chrXV	602865	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.09;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1594,168,0
chrXV	603549	.	T	C	1262	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.14;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1295,138,0
chrXV	603564	.	C	G	1170	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.94;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1203,132,0
chrXV	603992	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=23.81;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1152,126,0
chrXV	604096	.	G	T	1149	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=20.89;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1182,126,0
chrXV	604119	.	C	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9401;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=21.46;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1192,129,0
chrXV	604154	.	C	T	1141	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.75;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1174,126,0
chrXV	604256	.	C	T	1446	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1940;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=17.63;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1479,159,0
chrXV	604265	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=17.87;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1516,159,0
chrXV	604413	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=17.24;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1188,129,0
chrXV	604415	.	C	G	1187	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.46;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1220,135,0
chrXV	604542	.	C	G	1137	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=8.3017;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=18.34;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1170,129,0
chrXV	604572	.	A	T	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;MQRankSum=1.175;QD=18.49;ReadPosRankSum=2.331;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:2,60:63:99:1198,132,0
chrXV	604762	.	G	C	1684	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.76;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1717,189,0
chrXV	605294	.	C	T	3653.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.19;SB=-1.743e+03	GT:AD:DP:GQ:PL	1/1:0,150:151:99:3653,384,0
chrXV	605644	.	C	T	2094	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.3839;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.59;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,91:97:99:2127,222,0
chrXV	606043	.	C	T	1477	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.17;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1510,165,0
chrXV	606232	.	G	A	3215.99	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.58;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:3249,354,0
chrXV	606404	.	A	T	2685	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.01;FS=0.000;HaplotypeScore=8.1104;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=23.35;SB=-1.585e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2718,282,0
chrXV	606572	.	A	G	1723	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.54;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1756,192,0
chrXV	606849	.	G	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.45;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1342,144,0
chrXV	606886	.	C	T	1371	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.48;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1404,147,0
chrXV	606945	.	T	C	1456	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=-1.531;QD=20.80;ReadPosRankSum=1.682;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1489,162,0
chrXV	606968	.	T	C	1489	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-0.044;QD=19.09;ReadPosRankSum=1.688;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1522,165,0
chrXV	606969	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=20.10;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1601,168,0
chrXV	607357	.	G	A	1398	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.15;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1431,156,0
chrXV	608199	.	C	T	2088	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.75;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2121,231,0
chrXV	608418	.	A	G	1658	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1691,180,0
chrXV	608505	.	T	C	1665	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=85;Dels=0.00;FS=10.652;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=0.924;QD=19.59;ReadPosRankSum=2.215;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:2,82:85:99:1698,183,0
chrXV	608673	.	A	G	1703	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=12.883;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;MQRankSum=-1.187;QD=20.77;ReadPosRankSum=2.390;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1736,192,0
chrXV	608682	.	T	C	1511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.7697;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=0.551;QD=19.13;ReadPosRankSum=2.809;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1544,177,0
chrXV	608850	.	T	C	910	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:943,102,0
chrXV	608958	.	A	G	1779	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;MQRankSum=-0.097;QD=19.99;ReadPosRankSum=1.693;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1812,204,0
chrXV	609135	.	C	T	783	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=4.2082;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=12.23;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:87:816,87,0
chrXV	609344	.	G	T	1889	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=19.47;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1922,210,0
chrXV	609542	.	C	G	1439	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.091;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=10.0570;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;MQRankSum=1.276;QD=18.45;ReadPosRankSum=1.276;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:1,75:78:99:1472,162,0
chrXV	609550	.	G	A	1432	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.089;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.8527;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=1.288;QD=18.13;ReadPosRankSum=0.799;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1465,156,0
chrXV	609743	.	A	G	2861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.1138;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-0.530;QD=23.64;ReadPosRankSum=1.703;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2894,312,0
chrXV	609836	.	T	C	2331	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=0.962;QD=23.55;ReadPosRankSum=1.697;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2364,255,0
chrXV	610300	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.34;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1970,216,0
chrXV	610420	.	C	A	2201	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.41;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2234,234,0
chrXV	610549	.	G	A	2162	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=21.84;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2195,228,0
chrXV	610554	.	C	G	2079	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=21.21;SB=-1.206e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2112,228,0
chrXV	610660	.	G	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.36;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1977,213,0
chrXV	610864	.	A	G	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=3.522;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-0.321;QD=21.57;ReadPosRankSum=1.689;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1780,198,0
chrXV	610882	.	A	C	1386	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.69;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1419,156,0
chrXV	610939	.	T	C	1423	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-0.025;QD=20.62;ReadPosRankSum=1.682;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1456,159,0
chrXV	611053	.	T	A	2334	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.108;DP=109;Dels=0.00;FS=7.095;HaplotypeScore=8.4283;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.513;QD=21.41;ReadPosRankSum=2.404;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:2,107:109:99:2367,255,0
chrXV	611138	.	T	C	2178	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.47;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2211,240,0
chrXV	611332	.	G	A	2327	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.99;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,95:97:99:2360,243,0
chrXV	612004	.	G	A	2784	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=8.4246;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.27;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,122:125:99:2817,300,0
chrXV	612123	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=14.83;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1101,117,0
chrXV	612133	.	G	A	1210	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.13;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1243,135,0
chrXV	612466	.	A	G	1203	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=20.74;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1236,138,0
chrXV	612840	.	G	A	1608	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.65;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1641,183,0
chrXV	612869	.	C	T	1858	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.77;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1891,198,0
chrXV	614538	.	G	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.00;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,101:103:99:1784,186,0
chrXV	614674	.	A	G	2345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=113;Dels=0.00;FS=3.416;HaplotypeScore=6.6156;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=0.247;QD=20.75;ReadPosRankSum=1.670;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2378,261,0
chrXV	615019	.	C	T	2233	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.89;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2266,237,0
chrXV	615172	.	G	A	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.178;DP=100;Dels=0.00;FS=4.202;HaplotypeScore=4.6798;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;MQRankSum=1.663;QD=19.41;ReadPosRankSum=1.524;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:1974,207,0
chrXV	615175	.	A	G	1805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=104;Dels=0.01;FS=0.000;HaplotypeScore=4.6798;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;MQRankSum=-0.925;QD=17.36;ReadPosRankSum=1.698;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:1,102:103:99:1838,210,0
chrXV	615199	.	G	A	1714	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8931;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.04;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1747,186,0
chrXV	615511	.	C	T	2979	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=21.59;SB=-1.551e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:3012,324,0
chrXV	615643	.	A	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=19.31;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1597,177,0
chrXV	616666	.	T	A	2090	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.49;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2123,225,0
chrXV	616818	.	A	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.36;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1175,126,0
chrXV	616830	.	T	C	882	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=15.47;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:57:99:915,99,0
chrXV	617162	.	T	C	1546	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=23.42;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1579,174,0
chrXV	617892	.	A	G	2496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.436;DP=117;Dels=0.00;FS=3.522;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-1.170;QD=21.33;ReadPosRankSum=1.703;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2529,276,0
chrXV	618586	.	A	G	1090	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.57;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1123,126,0
chrXV	618618	.	G	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.97;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1543,165,0
chrXV	618771	.	T	C	1069	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.02;FS=0.000;HaplotypeScore=15.3444;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=17.24;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1102,120,0
chrXV	618889	.	G	A	3301.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.58;SB=-1.546e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3301,351,0
chrXV	619031	.	C	G	2121	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.87;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2154,243,0
chrXV	619392	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=16.32;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1322,150,0
chrXV	619398	.	A	G	1228	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=15.16;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1261,141,0
chrXV	619406	.	G	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=14.91;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1226,135,0
chrXV	619485	.	G	A	684	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=10.21;SB=-1.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:78:717,78,0
chrXV	619490	.	C	G	799	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=13.10;SB=-2.950e+02	GT:AD:DP:GQ:PL	1/1:0,56:61:90:832,90,0
chrXV	619579	.	C	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.28;MQ0=0;QD=15.58;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1108,123,0
chrXV	619601	.	A	G	900	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=2.612;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.62;MQ0=0;MQRankSum=-1.380;QD=15.00;ReadPosRankSum=2.368;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:933,102,0
chrXV	619644	.	T	C	630	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=47.3742;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=10.33;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:78:663,78,0
chrXV	619666	.	G	A	922	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=41.9048;MLEAC=2;MLEAF=1.00;MQ=34.52;MQ0=0;QD=14.63;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:955,102,0
chrXV	619772	.	T	C	1119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;MQRankSum=-0.557;QD=19.63;ReadPosRankSum=1.670;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1152,126,0
chrXV	619776	.	G	A	1110	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.99;MQ0=0;QD=19.14;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1143,120,0
chrXV	619795	.	C	T	711	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.330;DP=43;Dels=0.00;FS=6.335;HaplotypeScore=3.3069;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;MQRankSum=0.685;QD=16.53;ReadPosRankSum=1.249;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:81:744,81,0
chrXV	619836	.	A	C	575	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=19.17;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:608,69,0
chrXV	619861	.	A	G	547	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=18.23;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:66:580,66,0
chrXV	619941	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=23.81;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1295,135,0
chrXV	620022	.	G	C	928	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=19.33;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:961,108,0
chrXV	620173	.	G	T	924	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=20.53;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:957,99,0
chrXV	620433	.	C	T	677	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.84;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:75:710,75,0
chrXV	620745	.	T	C	1225	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.49;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1258,138,0
chrXV	621107	.	G	A	1449	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.64;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1482,156,0
chrXV	621193	.	G	A	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.3044;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.685;QD=24.73;ReadPosRankSum=1.637;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1863,192,0
chrXV	621403	.	T	C	1956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.1802;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.528;QD=22.74;ReadPosRankSum=1.691;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1989,213,0
chrXV	621555	.	G	A	2575	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.11;SB=-1.414e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2608,288,0
chrXV	622410	.	C	T	1632	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7420;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.47;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1665,177,0
chrXV	622686	.	T	C	1220	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.808;QD=19.68;ReadPosRankSum=1.675;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,59:62:99:1253,135,0
chrXV	623052	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.56;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1329,147,0
chrXV	623415	.	T	C	1251	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7588;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.95;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1284,141,0
chrXV	623604	.	C	T	1470	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.10;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1503,156,0
chrXV	623880	.	A	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.47;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1650,177,0
chrXV	623931	.	A	T	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=76;Dels=0.00;FS=4.184;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.048;QD=19.32;ReadPosRankSum=1.641;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1501,162,0
chrXV	624091	.	G	A	1917	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.2557;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.10;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1950,204,0
chrXV	624279	.	C	T	1523	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.1746;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.45;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1556,162,0
chrXV	624491	.	T	A	1084	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.45;MQ0=0;QD=23.57;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1117,117,0
chrXV	624522	.	G	A	768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;MQRankSum=-1.141;QD=18.73;ReadPosRankSum=0.972;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:67:801,67,0
chrXV	624532	.	G	A	900	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=21.43;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:933,99,0
chrXV	624626	.	T	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.76;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1121,117,0
chrXV	624831	.	C	A	1497	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=22.34;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1530,174,0
chrXV	624863	.	T	G	1477	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=-1.061;QD=23.08;ReadPosRankSum=2.219;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1510,165,0
chrXV	625104	.	C	G	1269	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.06;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1302,141,0
chrXV	625559	.	A	C	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.229;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;MQRankSum=-0.838;QD=20.33;ReadPosRankSum=1.676;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1314,124,0
chrXV	625581	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=21.13;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1322,144,0
chrXV	625595	.	A	G	1039	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=0;QD=17.61;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1072,120,0
chrXV	625596	.	C	T	1048	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=18.39;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1081,117,0
chrXV	625649	.	C	T	1552	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1026;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=19.40;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1585,165,0
chrXV	626602	.	C	T	3777.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.17;SB=-1.666e+03	GT:AD:DP:GQ:PL	1/1:0,162:163:99:3777,396,0
chrXV	626754	.	T	A	942	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.84;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:975,102,0
chrXV	626916	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.8200;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=18.83;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1784,195,0
chrXV	626943	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.77;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1757,189,0
chrXV	627315	.	C	T	1421	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.8968;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1454,156,0
chrXV	628552	.	C	T	1651	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=20.64;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1684,177,0
chrXV	628572	.	C	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.50;MQ0=0;QD=20.34;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1823,195,0
chrXV	628846	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;QD=18.86;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1429,156,0
chrXV	628888	.	T	C	1803	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=18.78;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1836,201,0
chrXV	628909	.	A	G	1900	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.21;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1933,210,0
chrXV	629011	.	C	T	1304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7643;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;MQRankSum=-1.237;QD=20.06;ReadPosRankSum=0.962;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1337,141,0
chrXV	629470	.	G	A	1089	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.78;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1122,117,0
chrXV	631380	.	A	T	1616	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.26;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1649,174,0
chrXV	631847	.	G	A	890	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=17.80;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:923,102,0
chrXV	631954	.	T	C	883	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.64;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:99:916,102,0
chrXV	632091	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=12.9029;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.62;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1741,183,0
chrXV	632289	.	G	A	833	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.92;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:866,90,0
chrXV	632397	.	C	T	1540	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.33;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1573,165,0
chrXV	632423	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.36;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1762,183,0
chrXV	633069	.	C	T	2759	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-1.399e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2792,294,0
chrXV	633271	.	C	A	2297	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.006;DP=105;Dels=0.00;FS=5.588;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;MQRankSum=0.346;QD=21.88;ReadPosRankSum=1.666;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2330,231,0
chrXV	633283	.	C	T	2295	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=21.45;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2328,249,0
chrXV	633299	.	T	C	2457	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=21.74;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2490,267,0
chrXV	633831	.	C	T	2023	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=21.07;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2056,213,0
chrXV	633844	.	C	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=20.37;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1826,189,0
chrXV	633979	.	A	G	2205	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.97;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2238,243,0
chrXV	634307	.	T	C	1868	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=3.222;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.279;QD=22.24;ReadPosRankSum=1.608;SB=-1.061e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1901,207,0
chrXV	634609	.	C	T	1840	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.65;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1873,201,0
chrXV	635161	.	C	T	1402	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.24;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1435,156,0
chrXV	635241	.	C	T	1734	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.01;FS=0.000;HaplotypeScore=12.3922;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.85;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1767,189,0
chrXV	635837	.	C	A	2026	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.02;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2059,231,0
chrXV	636267	.	C	T	1353	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.16;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1386,144,0
chrXV	638499	.	G	A	1077	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.10;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1110,114,0
chrXV	638526	.	C	T	895	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.89;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:928,99,0
chrXV	638632	.	A	T	1588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7188;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.166;QD=21.46;ReadPosRankSum=1.637;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1621,174,0
chrXV	639154	.	G	T	2208	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.07;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2241,240,0
chrXV	639159	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=19.08;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1903,213,0
chrXV	639226	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=21.87;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1345,144,0
chrXV	639243	.	G	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=21.75;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1512,156,0
chrXV	639299	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=34.74;MQ0=0;QD=17.19;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1408,150,0
chrXV	639307	.	T	C	1389	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.56;MQ0=0;QD=16.73;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1422,153,0
chrXV	639313	.	G	T	1301	SnpCluster	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;QD=16.26;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1334,141,0
chrXV	639316	.	T	A	1291	SnpCluster	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;QD=16.34;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1324,141,0
chrXV	639334	.	G	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=38.82;MQ0=0;QD=16.13;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1356,144,0
chrXV	639365	.	C	T	1003	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.18;MQ0=0;QD=13.93;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1036,114,0
chrXV	639455	.	G	T	1713	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.437;DP=95;Dels=0.01;FS=0.000;HaplotypeScore=8.7463;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.405;QD=18.03;ReadPosRankSum=1.695;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1746,192,0
chrXV	639556	.	A	G	1740	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.02;FS=0.000;HaplotypeScore=2.8909;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=20.96;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1773,198,0
chrXV	639581	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=7.0205;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.09;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1399,147,0
chrXV	639717	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6262;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=21.87;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1542,177,0
chrXV	639978	.	A	G	2188	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=107;Dels=0.00;FS=6.870;HaplotypeScore=4.4315;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.016;QD=20.45;ReadPosRankSum=1.700;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2221,243,0
chrXV	639982	.	T	C	2182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.1148;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;MQRankSum=-1.379;QD=20.20;ReadPosRankSum=1.668;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2215,237,0
chrXV	640022	.	T	C	1487	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=15.99;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1520,168,0
chrXV	640127	.	C	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.50;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1661,183,0
chrXV	640481	.	A	G	2151	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=23.38;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2184,237,0
chrXV	640970	.	A	C	2443	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.21;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2476,279,0
chrXV	641108	.	C	A	1866	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.76;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1899,201,0
chrXV	641196	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.65;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1625,168,0
chrXV	641229	.	G	A	1695	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.4996;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=21.46;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1728,183,0
chrXV	641351	.	A	G	1633	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=9.4888;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.37;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1666,186,0
chrXV	641453	.	T	C	1025	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=17.37;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,53:59:99:1058,114,0
chrXV	641468	.	A	G	965	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=18.56;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:998,108,0
chrXV	641471	.	T	C	1000	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=17.86;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1033,111,0
chrXV	641537	.	T	C	782	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=15.04;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:815,90,0
chrXV	641538	.	T	A	819	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=15.75;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:852,90,0
chrXV	641550	.	C	T	708	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.35;MQ0=0;QD=13.11;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:78:741,78,0
chrXV	641551	.	T	C	686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=6.264;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.76;MQ0=0;MQRankSum=-1.686;QD=12.47;ReadPosRankSum=2.316;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:81:719,81,0
chrXV	641585	.	C	G	1061	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.34;MQ0=0;QD=15.84;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1094,117,0
chrXV	641755	.	T	A	1668	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=21.95;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1701,177,0
chrXV	642038	.	C	T	1263	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.57;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1296,144,0
chrXV	642126	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.39;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1155,123,0
chrXV	642138	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.827;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;MQRankSum=0.495;QD=15.86;ReadPosRankSum=1.584;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1143,126,0
chrXV	642164	.	A	G	1239	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;MQRankSum=0.909;QD=15.49;ReadPosRankSum=1.689;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1272,138,0
chrXV	642294	.	G	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=18.87;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1316,141,0
chrXV	642380	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.18;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1708,189,0
chrXV	642471	.	A	G	1661	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.86;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1694,186,0
chrXV	642646	.	G	A	1862	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.57;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1895,201,0
chrXV	643115	.	G	A	1089	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.11;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1122,123,0
chrXV	643206	.	C	T	1697	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.90;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1730,183,0
chrXV	643340	.	G	C	1225	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=43.84;MQ0=0;QD=16.55;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1258,138,0
chrXV	643343	.	C	T	1213	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=16.17;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1246,132,0
chrXV	643346	.	C	T	1217	SnpCluster	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=42.82;MQ0=0;QD=16.23;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1250,132,0
chrXV	643604	.	G	A	2917	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=23.72;SB=-1.535e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2950,312,0
chrXV	643871	.	C	T	2019	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.6010;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.69;SB=-1.121e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2052,219,0
chrXV	643999	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.29;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1549,168,0
chrXV	644117	.	G	A	1724	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7349;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=21.82;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1757,198,0
chrXV	644421	.	T	C	1979	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=109;Dels=0.00;FS=4.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;MQRankSum=1.123;QD=18.16;ReadPosRankSum=1.540;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2012,222,0
chrXV	644459	.	C	G	1555	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=17.67;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1588,171,0
chrXV	644486	.	T	C	1392	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=18.56;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1425,156,0
chrXV	644536	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.46;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1570,177,0
chrXV	644548	.	G	A	1813	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6663;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.14;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1846,195,0
chrXV	644578	.	C	T	2288	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9957;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=20.99;SB=-1.445e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2321,237,0
chrXV	644937	.	A	G	1769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.4310;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;MQRankSum=-0.634;QD=21.57;ReadPosRankSum=1.690;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1802,201,0
chrXV	645045	.	C	T	2529	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.38;SB=-1.337e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2562,267,0
chrXV	645075	.	C	T	2601	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=12.2389;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.62;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2634,276,0
chrXV	645543	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1708,180,0
chrXV	645801	.	G	A	1651	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.93;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1684,177,0
chrXV	645915	.	A	G	1845	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1878,204,0
chrXV	645971	.	A	G	1646	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.18;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1679,183,0
chrXV	646449	.	C	T	1600	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.28;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1633,183,0
chrXV	646463	.	G	A	1754	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.27;SB=-1.099e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1787,189,0
chrXV	646794	.	T	C	1580	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.58;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1613,174,0
chrXV	646866	.	T	C	1735	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.24;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1768,192,0
chrXV	647201	.	G	A	1459	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=18.71;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1492,165,0
chrXV	647207	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.52;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1515,165,0
chrXV	647253	.	C	T	1198	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.72;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1231,129,0
chrXV	647541	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.69;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1660,174,0
chrXV	647930	.	A	T	1859	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=22.67;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1892,201,0
chrXV	647957	.	G	A	1882	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=20.02;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1915,210,0
chrXV	648168	.	T	G	1547	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=19.83;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1580,171,0
chrXV	648172	.	T	G	1403	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.58;MQ0=0;QD=18.46;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1436,156,0
chrXV	648204	.	C	T	1243	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.51;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1276,135,0
chrXV	648237	.	C	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=17.77;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1188,123,0
chrXV	648663	.	A	G	3684.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.227;DP=174;Dels=0.00;FS=8.870;HaplotypeScore=11.2122;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.682;QD=21.17;ReadPosRankSum=3.409;SB=-1.984e+03	GT:AD:DP:GQ:PL	1/1:4,169:174:99:3684,411,0
chrXV	649028	.	G	A	2186	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.02;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2219,237,0
chrXV	649113	.	G	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.69;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1553,162,0
chrXV	649275	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.81;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1176,132,0
chrXV	649497	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.3241;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.87;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1126,126,0
chrXV	649752	.	C	T	928	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.17;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:961,102,0
chrXV	650442	.	A	G	915	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.80;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:948,102,0
chrXV	650943	.	C	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.54;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1327,144,0
chrXV	651516	.	C	T	687	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.57;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,35:37:81:720,81,0
chrXV	651690	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.75;SB=-4.901e+01	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1527,168,0
chrXV	651798	.	G	A	400	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,17:17:45:433,45,0
chrXV	652283	.	G	A	2059	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.99;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2092,228,0
chrXV	652485	.	C	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=19.45;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1278,138,0
chrXV	652513	.	A	G	1635	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;MQRankSum=1.056;QD=19.94;ReadPosRankSum=1.690;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1668,183,0
chrXV	652865	.	C	A	1536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;MQRankSum=0.610;QD=21.63;ReadPosRankSum=-1.049;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1569,165,0
chrXV	652895	.	G	A	1745	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=19.83;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1778,195,0
chrXV	652952	.	A	T	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.4823;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;MQRankSum=0.709;QD=17.75;ReadPosRankSum=1.693;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1595,171,0
chrXV	652958	.	T	C	1540	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.6166;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.91;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1573,171,0
chrXV	653138	.	T	C	1065	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.02;FS=0.000;HaplotypeScore=5.8920;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=17.75;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1098,120,0
chrXV	653186	.	A	T	1279	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.3859;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.09;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1312,141,0
chrXV	653618	.	C	T	1029	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.06;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1062,111,0
chrXV	653625	.	A	G	903	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-1.155;QD=18.81;ReadPosRankSum=1.588;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:936,102,0
chrXV	653702	.	C	T	1430	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=21.67;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1463,153,0
chrXV	653732	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.16;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1515,162,0
chrXV	653896	.	G	A	1747	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.69;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1780,186,0
chrXV	653929	.	G	A	1561	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.68;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1594,174,0
chrXV	653975	.	A	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=24.77;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1618,174,0
chrXV	654602	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=7.8088;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.182;QD=19.35;ReadPosRankSum=1.677;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1252,144,0
chrXV	654698	.	A	G	1357	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.62;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1390,153,0
chrXV	654734	.	G	A	1206	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=23.19;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1239,132,0
chrXV	654809	.	T	A	1108	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.16;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1141,129,0
chrXV	655035	.	C	T	2016	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=23.44;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2049,219,0
chrXV	655064	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=20.59;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1701,186,0
chrXV	655070	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.60;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1702,183,0
chrXV	655223	.	A	G	1780	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=19.78;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1813,204,0
chrXV	655286	.	A	G	2010	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.10;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2043,222,0
chrXV	655560	.	G	A	1452	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.05;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1485,156,0
chrXV	655601	.	C	A	1752	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.68;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1785,186,0
chrXV	655671	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=23.83;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1415,156,0
chrXV	655754	.	C	T	725	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=15.76;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:81:758,81,0
chrXV	655761	.	T	C	685	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.520;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;MQRankSum=0.884;QD=13.70;ReadPosRankSum=1.591;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:78:718,78,0
chrXV	655817	.	G	A	1387	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.49;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1420,150,0
chrXV	656009	.	C	T	1389	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.15;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1422,156,0
chrXV	656142	.	A	C	2033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=3.245;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;MQRankSum=-0.091;QD=21.40;ReadPosRankSum=1.696;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2066,228,0
chrXV	656165	.	T	G	1998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=-0.818;QD=21.96;ReadPosRankSum=1.694;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2031,225,0
chrXV	656264	.	G	T	1947	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.46;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1980,210,0
chrXV	656420	.	C	T	969	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=9.5726;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=15.14;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1002,111,0
chrXV	656534	.	T	C	1761	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=91;Dels=0.00;FS=6.941;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=1.382;QD=19.35;ReadPosRankSum=1.654;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:1,88:91:99:1794,192,0
chrXV	656567	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=5.8017;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=20.23;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1955,207,0
chrXV	656602	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.62;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1559,171,0
chrXV	656887	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=24.15;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1289,138,0
chrXV	656944	.	A	G	1358	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.02;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1391,150,0
chrXV	657104	.	A	G	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=67.4344;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-0.881;QD=0.30;ReadPosRankSum=2.258;SB=-4.678e+02	GT:AD:DP:GQ:PL	1/1:2,75:78:6:55,6,0
chrXV	657201	.	G	A	1245	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.5977;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=20.08;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1278,132,0
chrXV	657204	.	C	T	1249	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=7.6596;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=19.52;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1282,135,0
chrXV	657216	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=0.358;QD=18.98;ReadPosRankSum=1.673;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1134,126,0
chrXV	657269	.	T	A	988	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.96;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1021,108,0
chrXV	657410	.	A	T	1556	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=4.393;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.522;QD=23.58;ReadPosRankSum=1.627;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1589,168,0
chrXV	657752	.	C	T	2149	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=11.8953;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.49;SB=-1.169e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2182,237,0
chrXV	658010	.	C	T	1914	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8219;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.75;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1947,210,0
chrXV	658645	.	A	G	1346	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.09;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1379,153,0
chrXV	658744	.	G	A	2103	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=11.2054;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.697;QD=20.62;ReadPosRankSum=1.594;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:1,101:102:99:2136,217,0
chrXV	659511	.	G	A	1107	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=16.52;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1140,120,0
chrXV	659517	.	C	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.27;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1121,114,0
chrXV	659522	.	C	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=16.57;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1077,111,0
chrXV	659802	.	C	T	1208	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.26;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1241,132,0
chrXV	660208	.	A	G	2124	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.70;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2157,237,0
chrXV	660741	.	A	G	1020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.418;QD=17.29;ReadPosRankSum=1.673;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1053,114,0
chrXV	660805	.	G	A	1404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.427;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.255;QD=20.35;ReadPosRankSum=-1.172;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1437,150,0
chrXV	661048	.	C	T	1024	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.33;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1057,114,0
chrXV	661543	.	C	T	2035	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.52;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2068,216,0
chrXV	662029	.	A	T	13.30	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;DP=53;Dels=0.02;FS=12.875;HaplotypeScore=5.7637;MLEAC=1;MLEAF=0.500;MQ=53.58;MQ0=0;MQRankSum=0.510;QD=0.25;ReadPosRankSum=1.727;SB=-3.811e+02	GT:AD:DP:GQ:PL	0/1:3,49:52:14:43,0,14
chrXV	662174	.	T	C	1248	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.0277;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=24.00;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1281,138,0
chrXV	662208	.	C	A	978	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1011,117,0
chrXV	662272	.	C	A	1115	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.44;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1148,126,0
chrXV	662365	.	G	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=21.25;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1329,144,0
chrXV	662688	.	G	A	1099	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.98;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1132,117,0
chrXV	663595	.	A	C	2353	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=21.59;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2386,258,0
chrXV	663676	.	T	C	3743.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.850;DP=186;Dels=0.00;FS=14.531;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.220;QD=20.12;ReadPosRankSum=3.149;SB=-1.738e+03	GT:AD:DP:GQ:PL	1/1:6,180:186:99:3743,397,0
chrXV	663812	.	C	T	92.26	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=79.5710;MLEAC=2;MLEAF=1.00;MQ=53.01;MQ0=0;QD=1.09;SB=-4.953e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:15:125,15,0
chrXV	663897	.	A	G	2122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=43.83;MQ0=0;MQRankSum=-1.732;QD=19.65;ReadPosRankSum=1.700;SB=-1.079e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2155,234,0
chrXV	664112	.	G	A	2295	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=49.34;MQ0=0;QD=21.45;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2328,252,0
chrXV	664181	.	G	T	2489	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=44.04;MQ0=0;QD=22.63;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2522,264,0
chrXV	664211	.	C	T	2331	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=47.25;MQ0=0;QD=21.00;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2364,255,0
chrXV	664318	.	C	T	2489	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=19.60;SB=-1.380e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2522,261,0
chrXV	664333	.	C	T	1905	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=14.77;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:1938,213,0
chrXV	664342	.	T	C	1499	SnpCluster	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=34.20;MQ0=0;QD=12.39;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:1532,165,0
chrXV	664345	.	G	A	1484	SnpCluster	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=35.23;MQ0=0;QD=12.37;SB=-1.308e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:1517,162,0
chrXV	664352	.	A	C	1297	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.321;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;MQRankSum=0.946;QD=10.90;ReadPosRankSum=1.703;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:1330,153,0
chrXV	664387	.	A	G	1325	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=37.69;MQ0=0;QD=13.38;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1358,147,0
chrXV	664421	.	C	G	1249	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=39.04;MQ0=0;QD=15.61;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1282,138,0
chrXV	664440	.	A	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.92;MQ0=0;QD=18.75;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1327,141,0
chrXV	664462	.	T	C	1077	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=14.55;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1110,126,0
chrXV	664466	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=0;MQRankSum=-1.732;QD=15.47;ReadPosRankSum=1.681;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1085,117,0
chrXV	664473	.	T	C	1045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.40;MQ0=0;MQRankSum=1.039;QD=14.93;ReadPosRankSum=1.683;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1078,117,0
chrXV	664484	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.24;MQ0=0;QD=14.89;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1239,144,0
chrXV	664533	.	G	A	2560	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.78;MQ0=0;QD=22.65;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2593,276,0
chrXV	664542	.	A	G	2616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.326;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=47.43;MQ0=0;MQRankSum=0.114;QD=21.98;ReadPosRankSum=2.367;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:2,117:119:99:2649,294,0
chrXV	664629	.	C	T	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.199;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;MQRankSum=1.699;QD=17.31;ReadPosRankSum=-0.500;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:1,105:107:99:1885,194,0
chrXV	664650	.	C	T	2233	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=20.49;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2266,240,0
chrXV	664683	.	G	A	1990	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=40.00;MQ0=0;QD=20.31;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2023,210,0
chrXV	664734	.	G	A	1911	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=40.21;MQ0=0;QD=21.97;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1944,204,0
chrXV	664801	.	C	T	798	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.41;MQ0=0;QD=19.95;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:831,90,0
chrXV	664814	.	T	A	60.51	filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=12.10;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,5:5:12:93,12,0
chrXV	665162	.	C	A	519	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.11;MQ0=0;QD=8.51;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:60:552,60,0
chrXV	665238	.	T	C	1977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=53.53;MQ0=0;MQRankSum=-0.885;QD=21.73;ReadPosRankSum=1.694;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,89:91:99:2010,216,0
chrXV	665265	.	T	C	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.5105;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;MQRankSum=1.654;QD=19.80;ReadPosRankSum=0.759;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1815,201,0
chrXV	665409	.	A	G	1829	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=77.3207;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=21.27;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1862,213,0
chrXV	665469	.	T	A	1938	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6715;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=19.78;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1971,213,0
chrXV	665533	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=22.05;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:2150,222,0
chrXV	665560	.	A	G	1857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.608;QD=22.11;ReadPosRankSum=1.691;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1890,204,0
chrXV	666379	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=4.624;HaplotypeScore=5.1048;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=1.434;QD=22.45;ReadPosRankSum=1.673;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1335,147,0
chrXV	666607	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.64;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1487,156,0
chrXV	666884	.	T	C	1777	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7554;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.929;QD=21.41;ReadPosRankSum=1.690;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1810,201,0
chrXV	667108	.	G	A	1162	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=10.7848;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=17.61;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1195,132,0
chrXV	667235	.	A	G	2076	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.40;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2109,231,0
chrXV	667477	.	A	T	1659	filter	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.23;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1692,198,0
chrXV	667488	.	G	A	1879	filter	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.88;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1912,207,0
chrXV	667624	.	C	T	399	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=19.95;SB=-1.410e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:48:432,48,0
chrXV	667630	.	C	A	449	PASS	AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.45;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:0,20:20:54:482,54,0
chrXV	667729	.	G	C	277	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=10.6316;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.47;SB=-1.060e-02	GT:AD:DP:GQ:PL	1/1:0,15:15:33:310,33,0
chrXV	667969	.	A	C	1140	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;MQRankSum=-1.133;QD=21.92;ReadPosRankSum=0.267;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1173,113,0
chrXV	668097	.	A	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=26.32;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1770,189,0
chrXV	668343	.	C	T	1853	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.0631;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.06;SB=-1.177e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1886,201,0
chrXV	668451	.	A	G	2015	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.90;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2048,222,0
chrXV	668667	.	G	A	2171	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.10;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2204,240,0
chrXV	668767	.	G	C	1271	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.1214;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=19.26;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1304,144,0
chrXV	668833	.	C	T	1066	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;QD=19.04;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1099,117,0
chrXV	668880	.	G	A	317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.821;DP=52;Dels=0.00;FS=4.612;HaplotypeScore=36.4607;MLEAC=2;MLEAF=1.00;MQ=45.28;MQ0=0;MQRankSum=3.337;QD=6.10;ReadPosRankSum=-5.426;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:16,36:52:39:350,39,0
chrXV	668916	.	T	C	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=3.699;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=0.855;QD=16.25;ReadPosRankSum=1.686;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1252,138,0
chrXV	669051	.	G	A	1993	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=24.60;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2026,213,0
chrXV	669219	.	A	G	1645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=3.697;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=-1.098;QD=19.58;ReadPosRankSum=1.690;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1678,192,0
chrXV	669582	.	T	C	1809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=6.123;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.692;QD=21.03;ReadPosRankSum=1.652;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1842,204,0
chrXV	669720	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.62;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1438,153,0
chrXV	670050	.	G	T	1733	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.92;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1766,189,0
chrXV	670051	.	C	A	1607	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.7355;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.26;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1640,180,0
chrXV	670150	.	A	G	1479	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=-1.270;QD=19.72;ReadPosRankSum=1.686;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1512,162,0
chrXV	670200	.	C	T	1819	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.8770;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.46;SB=-1.114e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1852,195,0
chrXV	670328	.	A	G	1798	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=23.66;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1831,207,0
chrXV	670513	.	C	A	2435	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3760;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=24.11;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2468,276,0
chrXV	670593	.	A	G	897	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=8.9538;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.038;QD=19.93;ReadPosRankSum=1.655;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:930,105,0
chrXV	670894	.	A	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=23.12;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1328,141,0
chrXV	670961	.	T	A	706	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.42;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:81:739,81,0
chrXV	671153	.	T	C	1498	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.2673;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=21.71;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1531,171,0
chrXV	671212	.	A	G	1706	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.80;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1739,189,0
chrXV	671534	.	A	G	2686	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.7925;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=24.42;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2719,294,0
chrXV	671818	.	A	G	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.270;QD=19.85;ReadPosRankSum=1.699;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2137,231,0
chrXV	672196	.	C	A	1559	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.36;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1592,171,0
chrXV	672956	.	A	C	1215	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.0347;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.59;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1248,138,0
chrXV	673654	.	A	T	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.567;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.4186;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.247;QD=20.03;ReadPosRankSum=1.677;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1315,141,0
chrXV	675191	.	T	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.69;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1407,150,0
chrXV	675246	.	T	C	791	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=19.29;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:90:824,90,0
chrXV	675258	.	G	A	810	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=22.50;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:843,87,0
chrXV	675643	.	A	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=24.27;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1586,168,0
chrXV	675665	.	A	T	1785	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=22.04;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1818,201,0
chrXV	675701	.	T	C	1762	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=19.36;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1795,195,0
chrXV	675894	.	C	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.47;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1718,183,0
chrXV	676391	.	A	G	964	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=20.51;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:997,108,0
chrXV	676406	.	A	G	901	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;QD=17.33;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:934,102,0
chrXV	676532	.	C	T	1345	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.38;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1378,147,0
chrXV	676724	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.89;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1370,147,0
chrXV	676799	.	C	T	1803	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=22.82;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1836,195,0
chrXV	676817	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;MQRankSum=1.056;QD=19.66;ReadPosRankSum=1.690;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1665,183,0
chrXV	677286	.	G	A	1034	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.68;SB=-2.040e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1067,120,0
chrXV	677365	.	C	T	1003	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.67;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1036,111,0
chrXV	677733	.	C	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=17.89;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1214,132,0
chrXV	677846	.	T	A	2409	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=4.325;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.827;QD=21.70;ReadPosRankSum=1.701;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2442,261,0
chrXV	678027	.	C	G	1070	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=6.5666;MLEAC=2;MLEAF=1.00;MQ=53.35;MQ0=0;QD=20.19;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1103,120,0
chrXV	678070	.	A	G	1189	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=18.87;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1222,135,0
chrXV	678086	.	G	C	1593	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=19.19;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1626,177,0
chrXV	678099	.	A	C	1570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.5982;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;MQRankSum=0.214;QD=15.10;ReadPosRankSum=2.700;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:3,101:104:99:1603,186,0
chrXV	678100	.	C	G	1623	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.326;DP=103;Dels=0.00;FS=2.895;HaplotypeScore=7.8095;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=1.111;QD=15.76;ReadPosRankSum=2.067;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:2,101:103:99:1656,186,0
chrXV	678625	.	A	T	2143	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=24.35;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2176,225,0
chrXV	678705	.	C	T	1621	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=25.73;SB=-4.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1654,171,0
chrXV	678832	.	T	C	2489	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.93;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2522,279,0
chrXV	678936	.	G	A	2537	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=23.93;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2570,270,0
chrXV	679042	.	C	A	1604	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=22.59;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1637,171,0
chrXV	679088	.	A	G	858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.617;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;MQRankSum=0.527;QD=18.65;ReadPosRankSum=1.582;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:891,99,0
chrXV	679101	.	C	T	818	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=16.69;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:851,90,0
chrXV	679386	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=23.73;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1457,162,0
chrXV	679485	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.89;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1412,153,0
chrXV	679488	.	T	C	1355	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.184;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=0.729;QD=17.83;ReadPosRankSum=1.595;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1388,150,0
chrXV	679794	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.04;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1532,162,0
chrXV	679983	.	C	T	872	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.27;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:96:905,96,0
chrXV	680430	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=21.79;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1733,195,0
chrXV	680491	.	G	A	1666	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=23.46;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1699,177,0
chrXV	680797	.	T	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.4036;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=20.72;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,77:81:99:1711,186,0
chrXV	680922	.	C	T	1835	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.11;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1868,198,0
chrXV	680951	.	T	A	2347	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.14;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2380,255,0
chrXV	681039	.	A	G	1782	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.48;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1815,198,0
chrXV	681208	.	A	G	684	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.06;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:717,81,0
chrXV	681546	.	T	C	728	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.10;SB=-2.410e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:84:761,84,0
chrXV	681705	.	G	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1883,210,0
chrXV	682177	.	A	G	1318	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=22.72;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1351,150,0
chrXV	682254	.	G	A	1721	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4385;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.58;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1754,183,0
chrXV	682563	.	C	A	2243	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=19.50;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2276,249,0
chrXV	682629	.	C	A	1750	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=4.087;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.056;QD=21.08;ReadPosRankSum=0.507;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1783,198,0
chrXV	682723	.	T	G	1447	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4799;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=20.38;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1480,165,0
chrXV	682752	.	T	A	1653	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=76;Dels=0.00;FS=3.056;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;MQRankSum=-0.827;QD=21.75;ReadPosRankSum=2.353;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1686,177,0
chrXV	682813	.	G	C	1438	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.24;MQ0=0;QD=19.43;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1471,159,0
chrXV	682818	.	C	A	1390	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=46.29;MQ0=0;MQRankSum=0.787;QD=17.82;ReadPosRankSum=0.472;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1423,159,0
chrXV	682837	.	C	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.9356;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=18.68;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1471,156,0
chrXV	682961	.	C	T	1359	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=16.37;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1392,156,0
chrXV	682981	.	G	T	1430	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=21.03;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1463,153,0
chrXV	683158	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.95;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1814,192,0
chrXV	683169	.	A	G	1637	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.49;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1670,180,0
chrXV	683302	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.78;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1654,174,0
chrXV	683351	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.5376;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.40;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1563,171,0
chrXV	683410	.	C	T	1430	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=20.72;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1463,156,0
chrXV	683562	.	G	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=22.18;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1719,183,0
chrXV	683642	.	G	T	2480	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.14;SB=-1.511e+03	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2513,264,0
chrXV	683694	.	C	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=17.27;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1674,183,0
chrXV	683698	.	A	C	1376	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=91;Dels=0.00;FS=4.276;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=47.09;MQ0=0;MQRankSum=-0.133;QD=15.12;ReadPosRankSum=1.694;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1409,159,0
chrXV	683731	.	C	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.9257;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=16.87;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1096,117,0
chrXV	683759	.	G	A	741	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;QD=15.12;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:87:774,87,0
chrXV	683778	.	T	C	569	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=14.22;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:66:602,66,0
chrXV	683842	.	G	A	647	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=15.05;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:72:680,72,0
chrXV	683845	.	C	T	705	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=15.33;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:78:738,78,0
chrXV	684077	.	T	C	780	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.10;MQ0=0;QD=17.73;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:90:813,90,0
chrXV	684078	.	T	C	789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=46;Dels=0.00;FS=3.074;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.91;MQ0=0;MQRankSum=-1.320;QD=17.15;ReadPosRankSum=2.343;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:2,44:46:90:822,90,0
chrXV	684132	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.87;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1225,135,0
chrXV	684419	.	C	A	1410	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=10.3389;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=20.43;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1443,150,0
chrXV	684893	.	C	T	893	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.22;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:926,105,0
chrXV	685067	.	C	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1706,183,0
chrXV	685647	.	A	C	1402	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.32;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1435,159,0
chrXV	685741	.	G	C	1696	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.47;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1729,186,0
chrXV	685875	.	A	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.38;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1506,168,0
chrXV	686417	.	T	C	1502	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.46;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1535,165,0
chrXV	686985	.	G	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.74;SB=-2.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1568,165,0
chrXV	687317	.	A	G	1059	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.37;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1092,120,0
chrXV	687739	.	A	G	935	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=3.823;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.648;QD=22.80;ReadPosRankSum=1.564;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:99:968,105,0
chrXV	688425	.	G	A	660	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=12.45;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:78:693,78,0
chrXV	688433	.	T	A	771	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.50;MQ0=0;QD=14.55;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:804,84,0
chrXV	688554	.	T	A	1207	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=59;Dels=0.00;FS=3.163;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.135;QD=20.46;ReadPosRankSum=1.493;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1240,132,0
chrXV	688719	.	T	C	1893	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=104;Dels=0.00;FS=2.800;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-2.020;QD=18.20;ReadPosRankSum=2.402;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:2,101:104:99:1926,210,0
chrXV	688982	.	T	C	1702	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.01;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1735,189,0
chrXV	689078	.	A	G	2397	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;DP=119;Dels=0.00;FS=5.656;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.246;QD=20.14;ReadPosRankSum=2.924;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:3,116:119:99:2430,270,0
chrXV	689217	.	T	C	4228.01	PASS	AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.30;SB=-2.061e+03	GT:AD:DP:GQ:PL	1/1:0,173:174:99:4228,462,0
chrXV	689383	.	C	T	2458	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.56;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2491,267,0
chrXV	689599	.	A	G	2877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=10.8723;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.075;QD=21.00;ReadPosRankSum=1.707;SB=-1.439e+03	GT:AD:DP:GQ:PL	1/1:1,136:137:99:2910,324,0
chrXV	689641	.	T	C	1923	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=106;Dels=0.00;FS=4.901;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-1.291;QD=18.14;ReadPosRankSum=1.698;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:1,101:106:99:1956,222,0
chrXV	690202	.	C	T	1888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.203;DP=80;Dels=0.00;FS=2.846;HaplotypeScore=6.0377;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=1.032;QD=23.60;ReadPosRankSum=2.018;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1921,201,0
chrXV	690359	.	A	G	800	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.05;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:833,90,0
chrXV	690477	.	T	C	959	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:992,111,0
chrXV	691288	.	A	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1134,129,0
chrXV	691480	.	C	T	2212	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=21.69;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,96:102:99:2245,243,0
chrXV	691977	.	T	A	1459	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.46;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1492,159,0
chrXV	692038	.	T	C	1629	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=19.16;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1662,186,0
chrXV	692169	.	A	C	2211	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.77;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2244,252,0
chrXV	692736	.	T	G	1243	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.20;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1276,147,0
chrXV	692845	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=20.52;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1326,147,0
chrXV	692993	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.8055;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=19.42;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1470,156,0
chrXV	693526	.	C	T	1743	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.5884;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=24.21;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1776,192,0
chrXV	693793	.	A	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.97;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1549,171,0
chrXV	693898	.	A	G	1175	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.26;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1208,129,0
chrXV	693923	.	T	G	1000	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=18.52;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1033,114,0
chrXV	693989	.	A	G	822	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.6487;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.55;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:855,93,0
chrXV	694061	.	G	A	821	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.19;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:90:854,90,0
chrXV	694231	.	C	T	1119	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.31;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1152,120,0
chrXV	694271	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=23.02;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1161,120,0
chrXV	694301	.	G	C	1043	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.19;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1076,117,0
chrXV	694394	.	G	A	845	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=24.85;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:93:878,93,0
chrXV	694427	.	C	G	931	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=19.81;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:964,105,0
chrXV	694439	.	G	A	925	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=19.27;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:958,99,0
chrXV	694471	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.49;MQ0=0;QD=17.88;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1070,120,0
chrXV	694591	.	G	A	2025	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.8431;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=21.54;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2058,216,0
chrXV	694619	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.094;DP=84;Dels=0.00;FS=8.644;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.668;QD=22.18;ReadPosRankSum=2.391;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1896,204,0
chrXV	695116	.	T	C	1694	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1727,189,0
chrXV	695150	.	C	T	1409	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.72;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1442,156,0
chrXV	695231	.	A	G	1477	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.62;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1510,165,0
chrXV	695402	.	G	A	1351	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.79;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1384,144,0
chrXV	695843	.	G	A	888	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.65;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:921,96,0
chrXV	695870	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.00;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1161,120,0
chrXV	696143	.	G	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.10;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1199,126,0
chrXV	696273	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.70;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1400,153,0
chrXV	696614	.	C	T	1408	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.71;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1441,147,0
chrXV	697062	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.29;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1571,171,0
chrXV	697430	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.00;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1529,171,0
chrXV	697740	.	C	A	2465	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.25;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2498,276,0
chrXV	697884	.	G	C	2106	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.27;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2139,237,0
chrXV	697906	.	G	A	1940	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=22.05;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1973,207,0
chrXV	698025	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=17.57;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1597,171,0
chrXV	698124	.	G	A	1784	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=20.99;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1817,201,0
chrXV	698254	.	G	A	1622	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=20.27;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1655,174,0
chrXV	698306	.	T	C	804	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.970;DP=77;Dels=0.00;FS=2.748;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.75;MQ0=0;MQRankSum=-0.624;QD=10.44;ReadPosRankSum=2.386;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:93:837,93,0
chrXV	698579	.	T	G	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=1.274;QD=22.87;ReadPosRankSum=1.681;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1588,177,0
chrXV	699271	.	G	A	1073	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=6.5174;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.16;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1106,117,0
chrXV	699320	.	A	G	1060	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=18.60;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1093,120,0
chrXV	699449	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4725;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=18.15;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1140,126,0
chrXV	699602	.	A	G	1650	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=23.24;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1683,186,0
chrXV	699689	.	G	A	1391	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.98;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1424,150,0
chrXV	699718	.	G	A	1653	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=23.61;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1686,177,0
chrXV	700142	.	C	G	1307	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=19.22;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1340,147,0
chrXV	700484	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=20.82;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1407,150,0
chrXV	700514	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=21.24;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1520,171,0
chrXV	700551	.	C	T	1415	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.93;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1448,153,0
chrXV	700572	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.01;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1573,162,0
chrXV	700856	.	A	G	2677	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=23.28;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,113:115:99:2710,300,0
chrXV	700968	.	G	A	1507	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;QD=19.57;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1540,171,0
chrXV	701208	.	C	T	2925	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=20.17;SB=-1.730e+03	GT:AD:DP:GQ:PL	1/1:0,145:145:99:2958,312,0
chrXV	701218	.	C	A	2740	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=21.57;SB=-1.515e+03	GT:AD:DP:GQ:PL	1/1:0,124:127:99:2773,291,0
chrXV	701365	.	T	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.85;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1680,180,0
chrXV	701450	.	A	G	979	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=15.54;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,61:63:99:1012,114,0
chrXV	701653	.	G	A	2090	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.97;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2123,216,0
chrXV	701852	.	T	C	740	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=16.82;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:773,84,0
chrXV	702202	.	G	A	999	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=19.59;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1032,114,0
chrXV	702223	.	A	C	986	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=3.854;HaplotypeScore=3.4272;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=-1.461;QD=19.33;ReadPosRankSum=1.664;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1019,111,0
chrXV	702337	.	C	T	1100	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=61;Dels=0.00;FS=3.802;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;MQRankSum=1.097;QD=18.03;ReadPosRankSum=-0.693;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1133,126,0
chrXV	702338	.	T	A	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.517;DP=66;Dels=0.00;FS=12.253;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.829;QD=17.67;ReadPosRankSum=1.391;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:3,63:66:99:1199,132,0
chrXV	702475	.	T	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.73;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1569,177,0
chrXV	702511	.	G	C	1730	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.44;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,84:89:99:1763,192,0
chrXV	702546	.	G	T	2260	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.7962;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=24.84;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2293,237,0
chrXV	702746	.	G	A	1850	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.6992;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=22.84;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1883,198,0
chrXV	702809	.	T	C	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.3425;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=1.611;QD=22.33;ReadPosRankSum=1.611;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1953,219,0
chrXV	702953	.	C	T	3529.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.01;FS=0.000;HaplotypeScore=14.3013;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=23.07;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,151:152:99:3529,375,0
chrXV	702970	.	A	G	2635	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=21.60;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2668,291,0
chrXV	703091	.	C	T	1678	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7651;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.37;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1711,180,0
chrXV	703124	.	C	G	1866	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=23.04;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1899,210,0
chrXV	703246	.	C	T	2509	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=51.72;MQ0=0;QD=20.91;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2542,276,0
chrXV	703324	.	A	G	1536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.76;MQ0=0;MQRankSum=-1.466;QD=23.63;ReadPosRankSum=1.679;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1569,171,0
chrXV	703419	.	A	G	1466	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=20.08;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1499,165,0
chrXV	703508	.	A	T	16.85	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=-1.393;QD=1.69;ReadPosRankSum=1.044;SB=-8.826e+01	GT:AD:DP:GQ:PL	1/1:1,9:10:6:48,6,0
chrXV	703698	.	T	C	23.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=1.98;SB=-1.772e+00	GT:AD:DP:GQ:PL	1/1:0,12:12:6:55,6,0
chrXV	710181	.	G	A	420	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=14.00;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:48:453,48,0
chrXV	710182	.	A	T	414	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.27;MQ0=0;QD=13.80;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:48:447,48,0
chrXV	710305	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.468;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.5303;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;MQRankSum=0.655;QD=18.28;ReadPosRankSum=1.592;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1386,153,0
chrXV	710553	.	C	T	1157	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=24.10;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1190,129,0
chrXV	710606	.	T	A	988	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=3.195;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;MQRankSum=0.505;QD=20.58;ReadPosRankSum=1.660;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1021,108,0
chrXV	710609	.	T	C	886	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=18.85;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:919,99,0
chrXV	710699	.	G	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.04;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1190,126,0
chrXV	711252	.	A	G	1492	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=6.1850;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.46;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1525,165,0
chrXV	711322	.	T	C	2203	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=-0.980;QD=20.78;ReadPosRankSum=1.699;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2236,252,0
chrXV	711327	.	G	A	2257	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.52;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2290,243,0
chrXV	711533	.	G	A	1672	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.64;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1705,180,0
chrXV	711590	.	A	G	2143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=11.9533;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.409;QD=18.01;ReadPosRankSum=1.703;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:1,117:119:99:2176,231,0
chrXV	711743	.	C	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.38;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1551,171,0
chrXV	712214	.	C	G	1663	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.47;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1696,186,0
chrXV	712250	.	T	C	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.256;DP=64;Dels=0.00;FS=12.772;HaplotypeScore=7.9190;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=1.311;QD=20.23;ReadPosRankSum=3.256;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:4,59:64:99:1328,147,0
chrXV	712306	.	C	T	1501	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.83;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1534,162,0
chrXV	712481	.	T	C	446	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=14.87;SB=-2.460e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:54:479,54,0
chrXV	712727	.	C	A	325	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.2010;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=10.48;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,30:31:42:358,42,0
chrXV	712794	.	C	T	1912	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=25.84;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1945,207,0
chrXV	712831	.	C	T	1696	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=26.92;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1729,180,0
chrXV	712979	.	A	G	410	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.52;SB=-6.201e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:48:443,48,0
chrXV	712982	.	G	A	425	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=20.24;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:48:458,48,0
chrXV	713039	.	G	A	646	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=17.46;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:72:679,72,0
chrXV	713054	.	A	G	822	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=17.87;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:855,93,0
chrXV	713264	.	A	T	2121	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=22.09;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2154,234,0
chrXV	713325	.	G	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=19.65;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1703,180,0
chrXV	713345	.	A	G	1641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=4.431;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=-1.490;QD=19.08;ReadPosRankSum=1.692;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1674,186,0
chrXV	713393	.	T	C	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.385;QD=20.34;ReadPosRankSum=1.694;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1864,207,0
chrXV	713519	.	T	C	2887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=128;Dels=0.00;FS=6.917;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-1.623;QD=22.55;ReadPosRankSum=2.411;SB=-1.449e+03	GT:AD:DP:GQ:PL	1/1:2,126:128:99:2920,324,0
chrXV	713612	.	T	C	3130	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.89;SB=-1.649e+03	GT:AD:DP:GQ:PL	1/1:0,143:143:99:3163,351,0
chrXV	713926	.	T	C	2117	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.38;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2150,240,0
chrXV	714100	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.5221;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=24.50;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1405,153,0
chrXV	714243	.	T	C	1910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=82;Dels=0.00;FS=3.697;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.000;QD=23.29;ReadPosRankSum=1.690;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1943,207,0
chrXV	714318	.	C	T	1840	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.3547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.44;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1873,198,0
chrXV	714391	.	G	C	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=4.483;HaplotypeScore=3.4909;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.685;QD=24.74;ReadPosRankSum=1.542;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1864,182,0
chrXV	714566	.	A	G	1504	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.32;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1537,171,0
chrXV	714582	.	T	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.89;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1823,201,0
chrXV	714848	.	G	A	1634	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.14;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1667,177,0
chrXV	715193	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.1252;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.52;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1249,132,0
chrXV	715572	.	A	T	1513	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;DP=73;Dels=0.00;FS=4.771;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.684;QD=20.73;ReadPosRankSum=1.636;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1546,162,0
chrXV	715611	.	C	T	1610	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6159;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.47;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1643,171,0
chrXV	715653	.	C	A	1556	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=20.75;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1589,165,0
chrXV	715665	.	G	A	1366	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=19.24;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1399,144,0
chrXV	715785	.	A	G	1399	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=64;Dels=0.00;FS=3.369;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.182;QD=21.86;ReadPosRankSum=1.677;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,62:64:99:1432,156,0
chrXV	715815	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.69;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1291,144,0
chrXV	715851	.	A	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.10;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1447,153,0
chrXV	716103	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.24;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1146,123,0
chrXV	716400	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2137;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.01;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1838,195,0
chrXV	716635	.	C	A	1117	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.27;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1150,126,0
chrXV	716655	.	A	G	1275	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;MQRankSum=0.657;QD=21.98;ReadPosRankSum=1.673;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1308,141,0
chrXV	716951	.	G	C	1648	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=23.88;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1681,183,0
chrXV	717052	.	C	T	1518	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.30;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1551,165,0
chrXV	717277	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.4642;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=19.15;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1642,177,0
chrXV	717298	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=17.48;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1484,165,0
chrXV	718180	.	T	C	2020	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=0.921;QD=21.26;ReadPosRankSum=1.695;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,93:95:99:2053,228,0
chrXV	718599	.	G	A	1846	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.72;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1879,198,0
chrXV	718752	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=23.20;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1773,195,0
chrXV	719208	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.6134;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.04;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1800,195,0
chrXV	720426	.	G	A	2369	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=17.42;SB=-1.162e+03	GT:AD:DP:GQ:PL	1/1:0,135:136:99:2402,264,0
chrXV	720445	.	A	G	2059	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.409;DP=120;Dels=0.00;FS=2.901;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=-0.502;QD=17.16;ReadPosRankSum=2.368;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:2,118:120:99:2092,237,0
chrXV	720799	.	A	G	1815	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.979;DP=90;Dels=0.00;FS=2.669;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;MQRankSum=-0.401;QD=20.17;ReadPosRankSum=2.367;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:2,87:90:99:1848,201,0
chrXV	720923	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=18.47;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1252,138,0
chrXV	721121	.	C	T	1279	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.68;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1312,138,0
chrXV	721169	.	G	C	1472	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.16;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1505,165,0
chrXV	721240	.	A	T	1016	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=55;Dels=0.00;FS=3.010;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.219;QD=18.47;ReadPosRankSum=1.668;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1049,111,0
chrXV	721322	.	G	A	1067	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=16.67;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1100,120,0
chrXV	721370	.	A	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0314;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=17.41;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1461,159,0
chrXV	721661	.	A	C	794	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.733;QD=19.85;ReadPosRankSum=1.559;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:90:827,90,0
chrXV	721768	.	C	A	1089	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;QD=12.24;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1122,123,0
chrXV	721815	.	C	T	1549	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=12.01;SB=-1.671e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:1582,165,0
chrXV	721920	.	A	G	2055	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.35;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2088,225,0
chrXV	721957	.	G	A	1631	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=25.09;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1664,174,0
chrXV	722033	.	A	C	1421	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.92;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1454,156,0
chrXV	722437	.	T	C	1570	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=18.47;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1603,174,0
chrXV	722554	.	C	T	1147	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.48;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1180,132,0
chrXV	722718	.	A	C	1538	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;MQRankSum=0.137;QD=20.24;ReadPosRankSum=1.687;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1571,171,0
chrXV	722724	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.6500;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=20.01;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1474,165,0
chrXV	723226	.	A	C	1180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.293;DP=63;Dels=0.00;FS=3.026;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.490;QD=18.73;ReadPosRankSum=2.333;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1213,132,0
chrXV	723942	.	T	C	1263	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.447;QD=20.37;ReadPosRankSum=1.621;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1296,141,0
chrXV	724458	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.2414;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=19.70;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1274,141,0
chrXV	724989	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.11;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1697,183,0
chrXV	725469	.	A	G	2600	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=22.61;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,111:115:99:2633,285,0
chrXV	725534	.	T	A	2184	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.99;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2217,234,0
chrXV	726404	.	T	C	1529	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.17;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1562,171,0
chrXV	726499	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=66;Dels=0.00;FS=2.808;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-1.177;QD=19.38;ReadPosRankSum=2.296;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:2,62:66:99:1312,141,0
chrXV	726602	.	G	A	1893	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.66;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1926,201,0
chrXV	726794	.	C	T	1717	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.52;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1750,186,0
chrXV	726893	.	G	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.31;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1639,180,0
chrXV	727008	.	G	A	1732	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1765,189,0
chrXV	727477	.	A	G	2132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.979;QD=23.17;ReadPosRankSum=1.694;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2165,237,0
chrXV	727823	.	C	G	2044	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.33;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2077,231,0
chrXV	727969	.	G	A	1698	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.26;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1731,180,0
chrXV	728063	.	G	A	2374	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=26.98;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2407,246,0
chrXV	728105	.	A	G	2348	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=22.80;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2381,261,0
chrXV	728111	.	G	A	2395	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=23.48;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2428,249,0
chrXV	729380	.	A	T	2610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=3.447;HaplotypeScore=9.2688;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.377;QD=22.31;ReadPosRankSum=1.672;SB=-1.408e+03	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2643,279,0
chrXV	729585	.	T	C	1362	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.62;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1395,153,0
chrXV	729765	.	A	C	2780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=6.179;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;MQRankSum=-1.423;QD=24.82;ReadPosRankSum=1.701;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2813,300,0
chrXV	729766	.	G	T	2837	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=25.56;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2870,300,0
chrXV	729813	.	G	C	1776	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=21.40;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1809,195,0
chrXV	729831	.	A	G	1209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;MQRankSum=-0.852;QD=19.19;ReadPosRankSum=1.677;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1242,138,0
chrXV	730011	.	C	T	4645.01	PASS	AC=2;AF=1.00;AN=2;DP=190;Dels=0.00;FS=0.000;HaplotypeScore=10.4754;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.45;SB=-1.754e+03	GT:AD:DP:GQ:PL	1/1:0,190:190:99:4645,490,0
chrXV	730179	.	A	G	2726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.00;FS=3.155;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;MQRankSum=-0.199;QD=22.34;ReadPosRankSum=1.675;SB=-1.527e+03	GT:AD:DP:GQ:PL	1/1:1,121:122:99:2759,306,0
chrXV	730479	.	G	A	2389	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.52;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2422,252,0
chrXV	730763	.	A	G	1419	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.18;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1452,156,0
chrXV	730821	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.163;QD=20.48;ReadPosRankSum=1.629;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1405,153,0
chrXV	731874	.	A	T	2387	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-0.203;QD=21.50;ReadPosRankSum=1.638;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:1,110:111:99:2420,255,0
chrXV	732036	.	A	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.97;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1331,141,0
chrXV	732267	.	A	G	1981	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.81;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2014,231,0
chrXV	732345	.	A	G	2061	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0766;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.16;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2094,237,0
chrXV	732477	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=22.85;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1541,174,0
chrXV	732609	.	A	G	2149	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.15;SB=-1.252e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2182,246,0
chrXV	733385	.	A	G	1813	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.0371;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.37;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1846,201,0
chrXV	733475	.	G	C	1429	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=19.05;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1462,162,0
chrXV	733489	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=18.32;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1407,153,0
chrXV	733608	.	A	G	1132	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.898;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.221;QD=16.41;ReadPosRankSum=2.869;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:3,66:69:99:1165,126,0
chrXV	733667	.	C	G	2247	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.40;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2280,252,0
chrXV	733953	.	A	G	1876	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.60;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1909,210,0
chrXV	734684	.	C	T	1373	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.45;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1406,147,0
chrXV	735107	.	T	A	2417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.161;QD=24.66;ReadPosRankSum=1.696;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2450,252,0
chrXV	735517	.	G	A	3084	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=7.1761;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.16;SB=-1.691e+03	GT:AD:DP:GQ:PL	1/1:0,153:153:99:3117,345,0
chrXV	735547	.	G	A	2359	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.47;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2392,252,0
chrXV	735678	.	T	C	1711	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.13;SB=-1.090e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1744,195,0
chrXV	735877	.	G	T	2353	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=18.10;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2386,252,0
chrXV	735886	.	C	T	2322	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.00;MQ0=0;QD=18.00;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2355,249,0
chrXV	735970	.	A	G	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.733;QD=18.42;ReadPosRankSum=2.379;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1304,141,0
chrXV	736306	.	C	G	1355	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.57;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1388,153,0
chrXV	736390	.	G	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=24.35;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1202,126,0
chrXV	736963	.	C	T	2006	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=8.8254;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=20.68;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2039,219,0
chrXV	737172	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.80;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1341,144,0
chrXV	737281	.	A	G	1330	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.46;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1363,150,0
chrXV	737295	.	A	G	1384	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=20.35;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1417,153,0
chrXV	737529	.	T	C	1697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.498;DP=74;Dels=0.00;FS=4.068;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.000;QD=22.93;ReadPosRankSum=0.749;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1730,166,0
chrXV	737961	.	A	T	1984	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.80;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2017,216,0
chrXV	738026	.	T	C	1313	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=67;Dels=0.00;FS=3.291;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.407;QD=19.60;ReadPosRankSum=1.624;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:1,63:67:99:1346,147,0
chrXV	738108	.	C	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.50;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1503,162,0
chrXV	738156	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.22;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1285,135,0
chrXV	738277	.	G	A	2238	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.31;SB=-1.022e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2271,237,0
chrXV	738617	.	A	T	786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=1.094;QD=20.15;ReadPosRankSum=1.641;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:84:819,84,0
chrXV	738717	.	T	A	605	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.17;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:66:638,66,0
chrXV	739134	.	G	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.06;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1842,198,0
chrXV	739347	.	T	C	1211	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=18.07;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1244,135,0
chrXV	739350	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.54;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1294,138,0
chrXV	739437	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.44;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1491,168,0
chrXV	739494	.	G	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.20;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1178,123,0
chrXV	739992	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;DP=84;Dels=0.00;FS=10.181;HaplotypeScore=6.6346;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.253;QD=22.37;ReadPosRankSum=2.917;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:3,81:84:99:1912,210,0
chrXV	740688	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=22.29;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1326,138,0
chrXV	741144	.	T	C	1112	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=15.23;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1145,129,0
chrXV	741150	.	A	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=15.90;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1162,123,0
chrXV	741440	.	T	C	2133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.353;DP=102;Dels=0.00;FS=2.638;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=0.205;QD=20.91;ReadPosRankSum=2.401;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:2166,237,0
chrXV	741453	.	C	T	1907	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.07;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1940,210,0
chrXV	741734	.	C	T	1566	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=17.60;SB=-1.084e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1599,171,0
chrXV	742132	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=4.429;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.256;QD=21.61;ReadPosRankSum=1.562;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1351,150,0
chrXV	742163	.	G	A	1515	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=21.04;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1548,162,0
chrXV	742188	.	G	T	1513	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=19.65;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1546,165,0
chrXV	742253	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=16.39;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1197,132,0
chrXV	742344	.	G	C	861	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=18.72;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:894,99,0
chrXV	742993	.	C	T	1827	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.13;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1860,195,0
chrXV	743206	.	G	C	1488	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.55;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1521,162,0
chrXV	743338	.	G	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.63;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1572,165,0
chrXV	743656	.	C	T	1806	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.02;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1839,195,0
chrXV	744079	.	T	C	1893	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.27;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1926,216,0
chrXV	744303	.	C	A	2413	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.34;SB=-1.378e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2446,252,0
chrXV	744491	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=13.6537;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=20.45;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1362,150,0
chrXV	744503	.	T	C	1191	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.57;MQ0=0;QD=17.78;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1224,132,0
chrXV	744522	.	A	G	1164	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=14.55;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1197,135,0
chrXV	744523	.	T	G	1234	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=15.42;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1267,138,0
chrXV	744578	.	A	G	948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.3999;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;MQRankSum=-0.052;QD=14.15;ReadPosRankSum=1.575;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:981,111,0
chrXV	744580	.	T	C	980	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.6112;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=14.63;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1013,117,0
chrXV	744706	.	T	C	1542	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.35;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1575,171,0
chrXV	745114	.	G	T	702	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=15.60;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:735,81,0
chrXV	745138	.	C	T	750	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.05;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:81:783,81,0
chrXV	745180	.	C	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;QD=18.98;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1153,120,0
chrXV	745192	.	T	C	1014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;DP=61;Dels=0.00;FS=3.025;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;MQRankSum=-0.749;QD=16.62;ReadPosRankSum=2.369;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1047,114,0
chrXV	745468	.	C	T	782	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=19.55;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:815,87,0
chrXV	745547	.	A	T	2238	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=24.06;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2271,237,0
chrXV	745659	.	G	T	889	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=22.22;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:922,99,0
chrXV	745778	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=-0.758;QD=18.85;ReadPosRankSum=1.678;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1258,141,0
chrXV	745927	.	C	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.4239;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.03;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1439,159,0
chrXV	746313	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.63;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1617,168,0
chrXV	746695	.	C	T	2218	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2251,237,0
chrXV	746845	.	T	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.63;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1569,171,0
chrXV	747091	.	A	G	1483	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.92;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1516,165,0
chrXV	747125	.	T	C	900	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=0.192;QD=20.00;ReadPosRankSum=1.655;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:933,105,0
chrXV	747181	.	T	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.10;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1259,135,0
chrXV	747612	.	C	G	1196	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=18.40;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1229,135,0
chrXV	747648	.	A	G	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=3.294;HaplotypeScore=7.5102;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=0.504;QD=20.27;ReadPosRankSum=1.688;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1634,183,0
chrXV	747741	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=4.363;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.732;QD=20.81;ReadPosRankSum=1.635;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1531,171,0
chrXV	747904	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=19.25;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1573,162,0
chrXV	747912	.	C	T	1464	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=17.02;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1497,159,0
chrXV	747945	.	T	C	1813	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=18.50;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1846,201,0
chrXV	748002	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=17.01;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1547,168,0
chrXV	748004	.	A	C	1552	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=17.64;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1585,171,0
chrXV	748445	.	A	G	1792	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.84;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1825,201,0
chrXV	748674	.	A	G	2035	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.4576;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.61;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2068,225,0
chrXV	748718	.	T	C	1799	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.77;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1832,198,0
chrXV	748819	.	G	A	2020	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=19.61;SB=-1.198e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2053,228,0
chrXV	748865	.	C	T	2215	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.6529;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=19.43;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,113:114:99:2248,240,0
chrXV	748887	.	G	T	2140	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.5122;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=18.61;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2173,237,0
chrXV	748926	.	C	T	1868	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=19.66;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1901,210,0
chrXV	749079	.	G	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.9658;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=21.72;SB=-1.213e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2531,273,0
chrXV	749459	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=4.459;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=0.543;QD=20.55;ReadPosRankSum=1.681;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1410,159,0
chrXV	749636	.	G	A	1620	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.52;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1653,174,0
chrXV	749731	.	T	C	1248	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.00;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1281,138,0
chrXV	750144	.	G	A	1346	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1379,153,0
chrXV	750300	.	A	G	1359	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=8.2976;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=23.43;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1392,156,0
chrXV	750782	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.18;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1325,144,0
chrXV	751145	.	T	C	1889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DP=79;Dels=0.00;FS=3.294;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;MQRankSum=0.899;QD=23.91;ReadPosRankSum=1.294;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1922,189,0
chrXV	751193	.	T	C	1311	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.9745;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.48;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1344,147,0
chrXV	751330	.	C	G	1470	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.00;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1503,165,0
chrXV	751374	.	C	T	1940	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1328;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.32;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1973,207,0
chrXV	751433	.	A	G	1655	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.0792;MLEAC=2;MLEAF=1.00;MQ=48.94;MQ0=0;MQRankSum=-0.338;QD=19.02;ReadPosRankSum=1.692;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1688,183,0
chrXV	751442	.	G	A	1319	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.77;MQ0=0;QD=15.70;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1352,144,0
chrXV	751445	.	C	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.81;MQ0=0;QD=17.96;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1452,153,0
chrXV	751476	.	T	G	1519	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=17.07;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1552,168,0
chrXV	751511	.	G	A	1639	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=15.76;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1672,180,0
chrXV	751523	.	C	T	1929	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=17.70;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:1962,207,0
chrXV	751571	.	C	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=17.68;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1518,159,0
chrXV	752064	.	G	A	2910	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=21.56;SB=-1.683e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2943,312,0
chrXV	752146	.	A	G	2412	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=118;Dels=0.00;FS=2.583;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.524;QD=20.44;ReadPosRankSum=2.408;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:2,115:118:99:2445,273,0
chrXV	752184	.	A	G	1499	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=21.11;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1532,174,0
chrXV	752228	.	C	G	1162	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.39;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1195,132,0
chrXV	752247	.	T	C	923	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.23;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:956,105,0
chrXV	752248	.	T	C	917	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=19.10;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:950,105,0
chrXV	752415	.	A	G	1414	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.340;DP=67;Dels=0.00;FS=2.997;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.124;QD=21.10;ReadPosRankSum=2.376;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:2,65:67:99:1447,165,0
chrXV	752538	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.29;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1204,132,0
chrXV	752580	.	C	T	1004	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=20.49;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1037,111,0
chrXV	752598	.	T	C	917	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.10;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:950,105,0
chrXV	752616	.	G	A	927	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=17.83;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:960,108,0
chrXV	752682	.	T	G	1044	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=19.70;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1077,120,0
chrXV	752721	.	T	C	1124	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=3.707;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.476;QD=20.81;ReadPosRankSum=1.668;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1157,129,0
chrXV	752751	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.4930;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.16;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1274,138,0
chrXV	752997	.	T	A	1256	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.70;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1289,138,0
chrXV	753168	.	A	G	1106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.334;QD=19.40;ReadPosRankSum=1.672;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1139,126,0
chrXV	753324	.	A	G	1333	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.1410;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.20;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1366,153,0
chrXV	754003	.	T	G	1757	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=-1.533;QD=19.97;ReadPosRankSum=0.856;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1790,174,0
chrXV	754376	.	T	G	988	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.315;QD=21.48;ReadPosRankSum=1.654;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:1,43:46:99:1021,111,0
chrXV	754590	.	A	C	1948	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.17;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1981,225,0
chrXV	754721	.	G	A	1671	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.42;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1704,189,0
chrXV	754893	.	G	A	1297	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.53;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1330,147,0
chrXV	754908	.	G	A	1621	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.26;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1654,177,0
chrXV	755003	.	C	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.18;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1567,171,0
chrXV	755099	.	G	A	1712	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=19.24;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1745,183,0
chrXV	755104	.	T	C	1578	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.90;MQ0=0;QD=18.14;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1611,177,0
chrXV	755116	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=84;Dels=0.00;FS=2.863;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;MQRankSum=-0.367;QD=18.32;ReadPosRankSum=2.391;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1572,171,0
chrXV	755170	.	G	A	1805	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=20.28;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1838,195,0
chrXV	755735	.	C	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.8952;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.82;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1451,159,0
chrXV	756307	.	A	T	4928.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.960;DP=229;Dels=0.00;FS=5.867;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.119;QD=21.52;ReadPosRankSum=2.863;SB=-2.766e+03	GT:AD:DP:GQ:PL	1/1:3,226:229:99:4928,520,0
chrXV	756405	.	C	A	2106	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=19.87;SB=-1.212e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2139,234,0
chrXV	756425	.	C	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.70;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1834,198,0
chrXV	756575	.	G	A	2364	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.5786;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.92;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2397,249,0
chrXV	756728	.	A	G	1758	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.8810;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.102;QD=19.75;ReadPosRankSum=1.693;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1791,201,0
chrXV	756913	.	A	G	1345	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.235;DP=69;Dels=0.00;FS=7.318;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.127;QD=19.49;ReadPosRankSum=2.235;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1378,147,0
chrXV	757291	.	A	C	1732	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=21.65;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1765,192,0
chrXV	757318	.	C	T	1539	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=21.08;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1572,168,0
chrXV	757677	.	C	T	1628	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.7888;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=22.30;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1661,174,0
chrXV	757746	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.39;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1247,135,0
chrXV	757781	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.20;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1082,117,0
chrXV	758539	.	A	G	1161	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1194,135,0
chrXV	759214	.	T	C	1674	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=17.81;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1707,186,0
chrXV	759288	.	A	G	2223	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;DP=106;Dels=0.00;FS=3.226;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=-1.598;QD=20.97;ReadPosRankSum=1.698;SB=-1.333e+03	GT:AD:DP:GQ:PL	1/1:1,103:106:99:2256,252,0
chrXV	759316	.	A	G	2469	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=22.45;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,107:110:99:2502,270,0
chrXV	759381	.	A	G	1620	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.41;MQ0=0;QD=23.48;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1653,180,0
chrXV	759410	.	A	G	1224	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=21.47;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1257,141,0
chrXV	759574	.	A	G	2042	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=21.05;SB=-1.163e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2075,225,0
chrXV	759629	.	T	C	1485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=3.696;HaplotypeScore=50.1454;MLEAC=2;MLEAF=1.00;MQ=47.29;MQ0=0;MQRankSum=1.187;QD=16.69;ReadPosRankSum=1.693;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1518,168,0
chrXV	759688	.	C	T	1017	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=18.49;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1050,111,0
chrXV	760240	.	C	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.36;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1466,156,0
chrXV	760339	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=15.27;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1392,150,0
chrXV	760354	.	A	G	1279	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=15.99;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1312,141,0
chrXV	761321	.	C	T	1019	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.68;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1052,117,0
chrXV	762091	.	T	A	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=6.247;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.96;MQ0=0;MQRankSum=0.088;QD=17.44;ReadPosRankSum=1.674;SB=-3.470e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1062,111,0
chrXV	762094	.	G	A	1066	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.66;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1099,117,0
chrXV	762399	.	T	C	1821	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.609;QD=24.61;ReadPosRankSum=1.685;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1854,204,0
chrXV	762665	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=21.49;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1387,153,0
chrXV	763568	.	T	G	1144	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=20.07;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1177,132,0
chrXV	763613	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=24.16;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1434,153,0
chrXV	763671	.	T	C	894	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=17.19;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:927,102,0
chrXV	763679	.	C	G	774	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;QD=15.80;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:90:807,90,0
chrXV	763682	.	T	C	736	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=15.33;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:84:769,84,0
chrXV	763784	.	C	T	1380	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=20.60;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1413,150,0
chrXV	763790	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=18.22;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1290,141,0
chrXV	763915	.	T	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=19.00;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1268,132,0
chrXV	763928	.	T	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=16.38;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1229,135,0
chrXV	763953	.	T	C	949	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=42.02;MQ0=0;QD=12.32;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:982,111,0
chrXV	763970	.	T	C	849	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=72;Dels=0.00;FS=3.051;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=0.191;QD=11.79;ReadPosRankSum=2.276;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:2,69:72:99:882,99,0
chrXV	763973	.	A	G	817	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=11.35;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:96:850,96,0
chrXV	764062	.	G	A	1244	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=22.21;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1277,135,0
chrXV	764138	.	T	C	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=75;Dels=0.00;FS=10.168;HaplotypeScore=7.2828;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;MQRankSum=-1.042;QD=17.95;ReadPosRankSum=2.765;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:3,70:75:99:1379,150,0
chrXV	764174	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=7.7144;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;MQRankSum=1.377;QD=16.78;ReadPosRankSum=1.688;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1359,147,0
chrXV	764185	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=18.97;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1494,165,0
chrXV	764224	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.1426;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;MQRankSum=-0.089;QD=16.20;ReadPosRankSum=1.599;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1313,144,0
chrXV	764348	.	G	A	1259	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=48.83;MQ0=0;MQRankSum=1.380;QD=21.34;ReadPosRankSum=-1.497;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1292,138,0
chrXV	764378	.	C	T	1058	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=16.79;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1091,114,0
chrXV	764381	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;QD=15.43;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1005,111,0
chrXV	764453	.	C	T	1499	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=19.72;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1532,162,0
chrXV	764588	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.47;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1407,153,0
chrXV	764698	.	G	A	1059	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.63;MQ0=0;QD=20.37;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1092,114,0
chrXV	765140	.	C	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.27;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1562,165,0
chrXV	765404	.	T	C	2305	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.76;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2338,255,0
chrXV	765690	.	A	C	2567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=13.3540;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=2.162;QD=22.72;ReadPosRankSum=1.740;SB=-1.398e+03	GT:AD:DP:GQ:PL	1/1:2,109:113:99:2600,291,0
chrXV	766151	.	C	T	970	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=52;Dels=0.00;FS=3.854;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.461;QD=18.65;ReadPosRankSum=-0.917;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1003,105,0
chrXV	766208	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.66;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1291,138,0
chrXV	766228	.	T	C	1284	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=20.38;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1317,141,0
chrXV	766250	.	A	G	1655	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=20.69;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1688,189,0
chrXV	766295	.	T	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.1589;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.66;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1851,207,0
chrXV	766612	.	G	A	2322	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.19;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2355,249,0
chrXV	766681	.	G	A	2589	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=20.55;SB=-9.710e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2622,282,0
chrXV	766799	.	G	A	822	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=6.0991;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:93:855,93,0
chrXV	766910	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=19.43;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1354,144,0
chrXV	766986	.	T	C	901	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.45;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:934,105,0
chrXV	767093	.	T	G	591	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.38;SB=-1.820e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:69:624,69,0
chrXV	767205	.	C	T	1146	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.76;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1179,129,0
chrXV	767370	.	T	A	1163	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=23.26;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1196,126,0
chrXV	767401	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.47;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1232,132,0
chrXV	767801	.	A	G	772	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=1.055;QD=16.78;ReadPosRankSum=1.657;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:90:805,90,0
chrXV	767815	.	C	T	788	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=17.13;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:821,87,0
chrXV	767852	.	C	G	1072	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=19.85;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1105,117,0
chrXV	768090	.	T	C	662	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=16.55;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:75:695,75,0
chrXV	768129	.	T	C	618	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.26;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:69:651,69,0
chrXV	768226	.	A	G	878	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=13.72;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:911,102,0
chrXV	768428	.	G	A	700	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.59;SB=-2.220e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:733,78,0
chrXV	768429	.	T	C	654	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=19.82;SB=-2.330e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:75:687,75,0
chrXV	768642	.	T	C	2157	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.97;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2190,240,0
chrXV	768702	.	C	A	50.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;DP=83;Dels=0.00;FS=1.353;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-0.538;QD=0.60;ReadPosRankSum=-4.515;SB=-7.206e-03	GT:AD:DP:GQ:PL	0/1:71,10:83:35:80,0,35
chrXV	768822	.	G	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=19.17;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1279,147,0
chrXV	769458	.	C	T	1410	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1443,153,0
chrXV	769620	.	T	C	1484	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=3.066;HaplotypeScore=12.0148;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=0.296;QD=18.78;ReadPosRankSum=2.388;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1517,171,0
chrXV	769989	.	C	A	1808	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.48;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1841,192,0
chrXV	770027	.	A	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=22.54;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1295,138,0
chrXV	770037	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=0.333;QD=22.42;ReadPosRankSum=1.666;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1199,129,0
chrXV	770068	.	A	G	576	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=15.16;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:66:609,66,0
chrXV	770094	.	A	C	581	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.60;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:66:614,66,0
chrXV	770118	.	A	C	562	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.30;MQ0=0;QD=13.71;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:595,66,0
chrXV	770126	.	A	G	616	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.87;MQ0=0;QD=15.40;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:69:649,69,0
chrXV	770179	.	T	C	623	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=12.98;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:72:656,72,0
chrXV	770183	.	G	A	619	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.15;MQ0=0;QD=15.10;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:69:652,69,0
chrXV	770184	.	G	A	623	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=14.83;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:69:656,69,0
chrXV	770215	.	T	G	840	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.63;MQ0=0;QD=16.80;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:873,99,0
chrXV	770241	.	A	C	727	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=19.13;SB=-3.910e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:760,87,0
chrXV	770280	.	A	G	943	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=20.06;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:976,108,0
chrXV	770462	.	G	A	1810	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=23.82;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1843,195,0
chrXV	770554	.	T	C	347	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=11.57;SB=-1.970e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:42:380,42,0
chrXV	770565	.	T	C	293	PASS	AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=12.21;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,22:24:36:326,36,0
chrXV	770734	.	A	G	2756	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=8.0928;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=23.16;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2789,306,0
chrXV	770991	.	T	C	2833	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=22.66;SB=-1.609e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2866,318,0
chrXV	771042	.	G	C	1816	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=19.32;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1849,204,0
chrXV	771051	.	C	T	1792	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=19.06;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1825,189,0
chrXV	771180	.	G	A	1825	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1664;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.99;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1858,195,0
chrXV	771207	.	G	A	1749	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=20.82;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1782,186,0
chrXV	771408	.	A	G	1205	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.44;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1238,135,0
chrXV	771765	.	C	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.57;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1288,135,0
chrXV	772218	.	A	G	1118	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=3.6914;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.96;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1151,126,0
chrXV	773455	.	A	G	1460	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.7039;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=1.288;QD=18.72;ReadPosRankSum=1.466;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1493,162,0
chrXV	773788	.	T	C	601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=3.617;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=1.130;QD=13.07;ReadPosRankSum=1.657;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:69:634,69,0
chrXV	773848	.	G	A	1223	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.4986;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.41;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1256,132,0
chrXV	773959	.	T	C	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.540;QD=21.10;ReadPosRankSum=1.655;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:1,89:91:99:1953,213,0
chrXV	774085	.	T	G	1203	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=21.11;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1236,135,0
chrXV	774149	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.80;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1342,141,0
chrXV	774457	.	G	C	1586	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1619,180,0
chrXV	774673	.	A	G	1984	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.24;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2017,222,0
chrXV	774747	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.71;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1759,183,0
chrXV	774866	.	A	G	1600	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.5770;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.86;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1633,180,0
chrXV	775100	.	A	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=25.75;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1810,192,0
chrXV	775426	.	T	G	1682	SnpCluster	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=15.15;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1715,192,0
chrXV	775430	.	A	G	1665	SnpCluster	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.52;MQ0=0;QD=14.61;SB=-1.301e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1698,192,0
chrXV	775432	.	G	A	1662	SnpCluster	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=14.84;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:1695,189,0
chrXV	775442	.	A	C	1756	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=42.69;MQ0=0;QD=15.82;SB=-1.254e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1789,198,0
chrXV	775735	.	T	A	2758	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=24.19;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2791,291,0
chrXV	776106	.	C	T	1864	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0392;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=19.62;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1897,207,0
chrXV	776223	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=79;Dels=0.00;FS=2.622;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.785;QD=19.86;ReadPosRankSum=2.386;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:2,75:79:99:1602,174,0
chrXV	776385	.	T	C	1185	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.94;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1218,132,0
chrXV	776514	.	T	C	1209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-0.415;QD=17.03;ReadPosRankSum=1.635;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1242,138,0
chrXV	776517	.	T	C	1179	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.84;SB=-8.360e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1212,135,0
chrXV	776725	.	C	T	1179	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.98;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1212,129,0
chrXV	776874	.	C	T	1398	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.26;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1431,153,0
chrXV	776943	.	A	C	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=73;Dels=0.00;FS=6.874;HaplotypeScore=7.9648;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;MQRankSum=0.758;QD=18.05;ReadPosRankSum=2.380;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:2,68:73:99:1351,150,0
chrXV	777123	.	G	A	2260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;MQRankSum=0.902;QD=23.54;ReadPosRankSum=1.155;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2293,240,0
chrXV	777138	.	G	A	2066	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=22.22;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2099,222,0
chrXV	777201	.	G	A	1048	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.71;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1081,117,0
chrXV	777225	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=17.37;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1162,120,0
chrXV	777268	.	A	G	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.010;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;MQRankSum=-1.287;QD=17.74;ReadPosRankSum=1.683;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1275,141,0
chrXV	777290	.	G	C	1353	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=18.04;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1386,153,0
chrXV	777385	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=15.34;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1260,141,0
chrXV	777394	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=15.38;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1202,132,0
chrXV	777412	.	G	A	1115	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=16.89;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1148,120,0
chrXV	777461	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=18.59;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1390,144,0
chrXV	777483	.	C	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.20;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1489,156,0
chrXV	777500	.	A	C	1393	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=17.86;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1426,156,0
chrXV	777627	.	T	C	1296	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.64;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1329,150,0
chrXV	777645	.	G	A	1254	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=17.91;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1287,138,0
chrXV	778024	.	C	T	1540	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.8564;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=22.99;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1573,165,0
chrXV	778433	.	C	G	963	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.93;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:996,108,0
chrXV	778545	.	T	C	1874	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=24.66;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1907,207,0
chrXV	778920	.	G	A	1848	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=103.9659;MLEAC=2;MLEAF=1.00;MQ=36.75;MQ0=0;QD=14.67;SB=-1.520e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:1881,204,0
chrXV	778923	.	C	A	192.03	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=103.1338;MLEAC=2;MLEAF=1.00;MQ=36.50;MQ0=0;QD=1.63;SB=-8.202e+01	GT:AD:DP:GQ:PL	1/1:0,13:118:24:225,24,0
chrXV	778933	.	C	T	1432	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;QD=12.67;SB=-1.195e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1465,162,0
chrXV	778987	.	C	T	886	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=14.77;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:919,99,0
chrXV	779089	.	A	C	1874	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=19.32;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1907,204,0
chrXV	779097	.	G	A	1806	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.85;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1839,189,0
chrXV	779132	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.65;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1581,165,0
chrXV	779194	.	A	G	1700	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.70;MQ0=0;MQRankSum=0.104;QD=20.48;ReadPosRankSum=1.690;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1733,189,0
chrXV	779252	.	C	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.6767;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=22.31;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1907,201,0
chrXV	779309	.	G	C	1629	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=22.01;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1662,180,0
chrXV	779773	.	T	C	1183	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.18;MQ0=0;QD=13.92;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1216,132,0
chrXV	779788	.	T	A	1094	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=14.21;SB=-1.600e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1127,120,0
chrXV	779790	.	C	A	1053	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.68;SB=-1.580e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1086,120,0
chrXV	779791	.	T	C	997	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.95;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1030,120,0
chrXV	779792	.	C	A	1049	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.62;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1082,120,0
chrXV	779801	.	C	T	948	SnpCluster	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.70;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:981,102,0
chrXV	779821	.	A	T	701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=90;Dels=0.00;FS=5.020;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.43;MQ0=0;MQRankSum=0.130;QD=7.79;ReadPosRankSum=3.215;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:6,84:90:84:734,84,0
chrXV	779822	.	T	C	677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;DP=86;Dels=0.00;FS=9.854;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.66;MQ0=0;MQRankSum=-2.364;QD=7.87;ReadPosRankSum=2.192;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:84:710,84,0
chrXV	780077	.	G	T	1351	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=25.02;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1384,144,0
chrXV	780221	.	C	T	1004	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=20.49;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1037,108,0
chrXV	780235	.	T	A	820	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.20;MQ0=0;QD=19.07;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:853,93,0
chrXV	780477	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=26.21;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1501,156,0
chrXV	780631	.	C	T	2404	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.34;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2437,255,0
chrXV	780728	.	A	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=20.38;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1419,159,0
chrXV	780732	.	C	A	1506	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7881;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.82;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1539,162,0
chrXV	780764	.	C	G	1480	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3908;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.14;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1513,165,0
chrXV	780823	.	G	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.38;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1594,171,0
chrXV	780858	.	G	C	1927	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.5422;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.65;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,85:89:99:1960,213,0
chrXV	781222	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.47;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1384,153,0
chrXV	781338	.	C	T	759	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=17.25;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:81:792,81,0
chrXV	781633	.	T	C	1468	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-1.274;QD=22.58;ReadPosRankSum=2.372;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:2,62:65:99:1501,162,0
chrXV	781811	.	G	C	962	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=19.63;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:995,108,0
chrXV	781897	.	C	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.6837;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=18.76;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1665,189,0
chrXV	781943	.	G	A	1913	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.14;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1946,204,0
chrXV	782167	.	G	T	1272	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9948;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=21.20;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1305,141,0
chrXV	782242	.	G	A	1802	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=21.45;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1835,204,0
chrXV	782356	.	A	C	1196	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.15;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1229,135,0
chrXV	782474	.	G	C	1712	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.38;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1745,189,0
chrXV	782527	.	G	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.17;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1496,159,0
chrXV	782578	.	G	A	1074	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.26;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1107,120,0
chrXV	782587	.	C	T	1070	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.58;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1103,117,0
chrXV	782623	.	T	C	1024	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=16.79;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1057,114,0
chrXV	782716	.	G	A	803	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.31;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:836,87,0
chrXV	782821	.	A	T	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.680;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=0.495;QD=22.27;ReadPosRankSum=1.683;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1614,177,0
chrXV	783414	.	T	G	916	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=23.49;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:949,102,0
chrXV	783434	.	A	G	694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=4.559;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;MQRankSum=0.173;QD=17.35;ReadPosRankSum=1.646;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:81:727,81,0
chrXV	783444	.	C	A	548	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=13.70;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:66:581,66,0
chrXV	783455	.	A	G	554	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=13.85;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:63:587,63,0
chrXV	783522	.	C	G	429	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=15.32;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:51:462,51,0
chrXV	783587	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.16;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1515,171,0
chrXV	783669	.	T	C	1522	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=18.79;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1555,174,0
chrXV	783674	.	T	C	1254	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=16.95;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1287,141,0
chrXV	783919	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.07;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1487,156,0
chrXV	784606	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1706,186,0
chrXV	784642	.	G	A	1349	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.26;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1382,144,0
chrXV	784734	.	C	T	934	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=21.72;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:967,102,0
chrXV	784813	.	C	G	1726	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=20.31;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,81:85:99:1759,198,0
chrXV	785050	.	T	C	1024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=-0.217;QD=21.33;ReadPosRankSum=1.660;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1057,117,0
chrXV	785112	.	G	A	1225	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.00;MQ0=0;QD=19.44;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1258,132,0
chrXV	785138	.	G	C	1239	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.37;MQ0=0;QD=14.41;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1272,144,0
chrXV	785151	.	A	C	1071	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.39;MQ0=0;QD=12.31;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1104,120,0
chrXV	785154	.	T	G	909	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=90;Dels=0.00;FS=6.267;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;MQRankSum=-2.340;QD=10.10;ReadPosRankSum=2.395;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:2,88:90:99:942,102,0
chrXV	785163	.	G	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.01;FS=0.000;HaplotypeScore=2.5873;MLEAC=2;MLEAF=1.00;MQ=35.44;MQ0=0;QD=11.48;SB=-1.291e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1147,123,0
chrXV	785177	.	C	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=40.01;MQ0=0;QD=13.50;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,93:98:99:1356,141,0
chrXV	785203	.	A	C	1723	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=45.75;MQ0=0;QD=16.57;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,102:104:99:1756,186,0
chrXV	785252	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=22.99;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1803,192,0
chrXV	785429	.	C	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.3936;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.79;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1863,204,0
chrXV	785674	.	A	G	1412	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=1.358;QD=19.08;ReadPosRankSum=1.685;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1445,159,0
chrXV	785820	.	T	A	789	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=4.2339;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.93;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:822,87,0
chrXV	785982	.	C	T	625	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=16.45;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:658,72,0
chrXV	786180	.	C	A	1395	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.36;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1428,147,0
chrXV	786510	.	T	C	966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=6.642;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.173;QD=16.10;ReadPosRankSum=1.559;SB=-2.740e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:999,111,0
chrXV	786645	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.111;DP=79;Dels=0.00;FS=3.123;HaplotypeScore=8.3342;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;MQRankSum=2.134;QD=23.78;ReadPosRankSum=2.323;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:2,76:79:99:1912,204,0
chrXV	786708	.	C	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=23.57;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1636,171,0
chrXV	786840	.	T	C	1197	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.76;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1230,132,0
chrXV	786986	.	T	A	2869	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.538;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=0.327;QD=20.06;ReadPosRankSum=1.659;SB=-1.394e+03	GT:AD:DP:GQ:PL	1/1:1,142:143:99:2902,318,0
chrXV	787002	.	A	T	2482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=130;Dels=0.00;FS=5.853;HaplotypeScore=100.3390;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-0.641;QD=19.09;ReadPosRankSum=1.678;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:1,129:130:99:2515,276,0
chrXV	787174	.	A	T	1534	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.91;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1567,165,0
chrXV	787507	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.76;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1376,144,0
chrXV	787600	.	C	T	665	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:75:698,75,0
chrXV	787943	.	C	T	1293	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.09;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1326,141,0
chrXV	788235	.	T	C	1865	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=91;Dels=0.00;FS=6.088;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.700;QD=20.49;ReadPosRankSum=2.901;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:3,88:91:99:1898,213,0
chrXV	788275	.	C	T	2180	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.95;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2213,231,0
chrXV	788305	.	G	A	2062	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.9360;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.04;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2095,231,0
chrXV	789087	.	G	A	1597	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.22;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1630,183,0
chrXV	789595	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=52;Dels=0.00;FS=2.781;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.262;QD=22.42;ReadPosRankSum=2.355;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:1199,132,0
chrXV	789672	.	A	G	1083	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=16.16;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1116,126,0
chrXV	789673	.	C	T	1161	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=17.07;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1194,126,0
chrXV	789699	.	T	C	987	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=15.67;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1020,114,0
chrXV	789868	.	T	A	2112	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.620;DP=94;Dels=0.00;FS=3.452;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.583;QD=22.47;ReadPosRankSum=1.695;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2145,231,0
chrXV	790068	.	C	A	2642	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.7831;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=24.92;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,103:106:99:2675,279,0
chrXV	790214	.	G	A	2359	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=23.59;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2392,252,0
chrXV	790680	.	A	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.32;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1291,141,0
chrXV	790997	.	T	C	2190	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=113;Dels=0.00;FS=2.892;HaplotypeScore=10.2963;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=0.201;QD=19.38;ReadPosRankSum=2.402;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:2,102:113:99:2223,243,0
chrXV	791498	.	T	C	1034	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=18.14;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1067,120,0
chrXV	791600	.	A	G	1503	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=4.376;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.017;QD=23.12;ReadPosRankSum=1.677;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:1,62:65:99:1536,165,0
chrXV	792087	.	T	C	1639	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.41;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1672,183,0
chrXV	792267	.	C	T	1887	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5575;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=18.68;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1920,198,0
chrXV	792422	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=10.1441;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=19.71;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:80:99:1610,174,0
chrXV	792469	.	C	G	1377	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3054;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=19.67;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1410,156,0
chrXV	792544	.	G	A	1363	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=23.50;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1396,141,0
chrXV	793037	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3951;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1630,183,0
chrXV	793184	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.137;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;MQRankSum=1.336;QD=21.06;ReadPosRankSum=1.683;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1549,171,0
chrXV	793987	.	G	T	3789.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=24.45;SB=-1.701e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:3789,399,0
chrXV	794018	.	A	C	2931	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.39;SB=-1.351e+03	GT:AD:DP:GQ:PL	1/1:0,136:137:99:2964,333,0
chrXV	794817	.	G	A	1666	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.14;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1699,186,0
chrXV	794866	.	T	A	2435	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.46;SB=-1.407e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2468,264,0
chrXV	795030	.	A	G	1493	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;MQRankSum=0.122;QD=21.03;ReadPosRankSum=1.586;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1526,171,0
chrXV	795327	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.83;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1464,162,0
chrXV	795362	.	G	A	2050	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=20.92;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2083,228,0
chrXV	795446	.	G	A	1458	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=59.7763;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=19.18;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1491,156,0
chrXV	795596	.	C	T	847	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.75;MQ0=0;QD=22.89;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:880,90,0
chrXV	795939	.	G	C	837	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=18.20;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:96:870,96,0
chrXV	796026	.	G	A	1257	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=21.67;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1290,135,0
chrXV	796275	.	C	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=7.5129;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.23;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1390,147,0
chrXV	796340	.	T	G	1280	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=20.98;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1313,141,0
chrXV	796437	.	G	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=17.18;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1253,132,0
chrXV	796472	.	C	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;QD=18.62;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1299,138,0
chrXV	796494	.	G	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.74;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1692,177,0
chrXV	796960	.	T	C	1212	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.54;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1245,138,0
chrXV	797034	.	A	T	1310	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=20.15;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1343,150,0
chrXV	797362	.	C	T	1283	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.69;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1316,138,0
chrXV	797426	.	C	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1085,114,0
chrXV	798206	.	A	T	2079	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.88;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2112,225,0
chrXV	798664	.	A	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.60;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1718,189,0
chrXV	798886	.	C	T	2850	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=24.36;SB=-1.445e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2883,297,0
chrXV	798916	.	T	C	2319	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=7.5049;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.490;QD=21.88;ReadPosRankSum=1.699;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2352,249,0
chrXV	799117	.	C	T	1825	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.74;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1858,195,0
chrXV	799894	.	T	A	1289	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7925;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=20.79;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1322,141,0
chrXV	799936	.	G	C	1562	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-7.770e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1595,177,0
chrXV	800155	.	C	T	1572	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=11.7659;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.15;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1605,171,0
chrXV	800494	.	T	C	2731	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;DP=122;Dels=0.00;FS=8.181;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.671;QD=22.39;ReadPosRankSum=3.325;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:4,115:122:99:2764,306,0
chrXV	800527	.	T	C	2593	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.643;QD=22.35;ReadPosRankSum=1.672;SB=-1.340e+03	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2626,291,0
chrXV	800594	.	G	A	2014	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.63;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2047,210,0
chrXV	800964	.	T	C	2994	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.0987;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=23.76;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,125:126:99:3027,336,0
chrXV	801084	.	G	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.46;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1511,159,0
chrXV	801285	.	C	T	1943	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.89;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1976,216,0
chrXV	801498	.	C	T	2389	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=22.97;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2422,255,0
chrXV	801593	.	A	T	2201	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.01;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2234,240,0
chrXV	802374	.	T	C	1476	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.315;DP=74;Dels=0.00;FS=3.830;HaplotypeScore=7.1879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.707;QD=19.95;ReadPosRankSum=0.896;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:2,71:74:99:1509,165,0
chrXV	802733	.	G	A	1345	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.35;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1378,144,0
chrXV	803453	.	A	G	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.479;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.549;QD=17.68;ReadPosRankSum=1.690;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1483,162,0
chrXV	803637	.	C	A	1485	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.80;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1518,165,0
chrXV	804330	.	C	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.00;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1595,171,0
chrXV	804331	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.89;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1445,162,0
chrXV	804445	.	T	A	1967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=6.189;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.140;QD=24.59;ReadPosRankSum=2.388;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:2,78:80:99:2000,210,0
chrXV	804694	.	C	T	2142	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=23.03;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2175,237,0
chrXV	804884	.	T	C	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.325;DP=81;Dels=0.01;FS=6.417;HaplotypeScore=11.3155;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=0.733;QD=17.47;ReadPosRankSum=2.356;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1448,159,0
chrXV	805025	.	C	G	3032	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=6.4291;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,121:123:99:3065,333,0
chrXV	805104	.	A	G	1462	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=6.232;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=0.027;QD=23.21;ReadPosRankSum=1.622;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1495,168,0
chrXV	805146	.	A	G	1335	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.54;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1368,153,0
chrXV	805185	.	A	C	1623	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.8973;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=18.44;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1656,186,0
chrXV	805617	.	T	C	1174	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.60;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1207,132,0
chrXV	805851	.	T	C	1375	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=3.029;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.914;QD=19.93;ReadPosRankSum=2.379;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1408,159,0
chrXV	805899	.	C	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.6300;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=21.32;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1227,135,0
chrXV	806232	.	A	G	2001	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.160;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-1.289;QD=23.00;ReadPosRankSum=1.692;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:2034,225,0
chrXV	806274	.	A	G	1827	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6914;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.49;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1860,204,0
chrXV	806319	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.68;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1399,150,0
chrXV	806960	.	G	T	997	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.77;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1030,111,0
chrXV	807285	.	T	G	969	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=17.00;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1002,114,0
chrXV	807324	.	A	G	733	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=13.57;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:87:766,87,0
chrXV	807337	.	T	C	823	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=16.46;SB=-2.970e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:856,93,0
chrXV	807366	.	G	A	601	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=14.66;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:66:634,66,0
chrXV	807453	.	C	T	1297	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.27;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1330,144,0
chrXV	807631	.	A	C	1637	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=23.39;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1670,186,0
chrXV	807684	.	C	T	1897	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=25.29;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1930,201,0
chrXV	807840	.	T	A	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=3.123;HaplotypeScore=4.4416;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.110;QD=22.12;ReadPosRankSum=1.688;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1758,186,0
chrXV	807892	.	C	T	1599	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.24;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1632,171,0
chrXV	807946	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=20.08;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1499,156,0
chrXV	807953	.	G	A	1559	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=21.36;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1592,165,0
chrXV	808020	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.32;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1372,147,0
chrXV	808141	.	G	A	2284	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.96;SB=-1.138e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2317,246,0
chrXV	808281	.	T	C	1946	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.17;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1979,216,0
chrXV	808677	.	G	A	2029	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.92;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2062,219,0
chrXV	809274	.	G	A	2577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.395;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.9988;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.751;QD=22.22;ReadPosRankSum=1.211;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:1,114:116:99:2610,248,0
chrXV	810088	.	T	G	2166	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.8572;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.54;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2199,237,0
chrXV	810364	.	G	T	2376	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.5882;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.03;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,111:113:99:2409,252,0
chrXV	810780	.	T	C	1609	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=23.32;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1642,180,0
chrXV	810838	.	G	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.02;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1294,141,0
chrXV	810930	.	T	C	1747	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=18.01;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1780,195,0
chrXV	810932	.	A	G	1768	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.4770;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=18.04;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1801,198,0
chrXV	811578	.	A	G	2067	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=23.49;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2100,234,0
chrXV	811738	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.30;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1491,162,0
chrXV	812004	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.3829;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.84;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1541,168,0
chrXV	812168	.	C	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.73;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1665,174,0
chrXV	812268	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.24;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1221,135,0
chrXV	812662	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=17.37;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1284,132,0
chrXV	812674	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.87;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1505,156,0
chrXV	813776	.	T	A	1370	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=18.77;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1403,156,0
chrXV	813952	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=17.15;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1285,135,0
chrXV	814261	.	G	A	1748	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.9027;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.85;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1781,189,0
chrXV	814685	.	G	A	1685	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.73;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1718,177,0
chrXV	814826	.	C	T	2220	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.13;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2253,240,0
chrXV	815003	.	T	C	1478	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=4.297;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.533;QD=18.95;ReadPosRankSum=1.688;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1511,168,0
chrXV	815030	.	C	T	1709	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=20.35;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1742,189,0
chrXV	815061	.	T	C	2069	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;MQRankSum=0.000;QD=22.01;ReadPosRankSum=1.695;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2102,231,0
chrXV	815222	.	A	G	1830	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.456;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.521;QD=22.32;ReadPosRankSum=1.648;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1863,207,0
chrXV	815249	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.17;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1606,168,0
chrXV	815267	.	C	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.7714;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=19.19;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1453,156,0
chrXV	815746	.	T	C	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.853;DP=90;Dels=0.00;FS=10.275;HaplotypeScore=7.3263;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.239;QD=19.16;ReadPosRankSum=2.898;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:3,86:90:99:1757,192,0
chrXV	815934	.	C	T	1730	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=7.2861;MLEAC=2;MLEAF=1.00;MQ=57.38;MQ0=0;QD=21.62;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1763,186,0
chrXV	816109	.	C	T	3217.04	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=23.48;SB=-1.386e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3250,342,0
chrXV	816215	.	C	G	2058	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.62;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:2091,237,0
chrXV	816326	.	G	A	1947	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.6793;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.63;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,84:90:99:1980,219,0
chrXV	816455	.	A	G	1869	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2090;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=0;QD=18.50;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1902,207,0
chrXV	816467	.	A	T	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=1.161;QD=16.58;ReadPosRankSum=1.694;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1558,171,0
chrXV	816611	.	A	G	2412	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=19.61;SB=-1.194e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2445,273,0
chrXV	816620	.	G	A	2283	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=18.87;SB=-1.247e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2316,255,0
chrXV	816745	.	A	G	2974	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.01;FS=0.000;HaplotypeScore=9.9300;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.53;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3007,327,0
chrXV	816857	.	C	T	1987	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.84;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2020,213,0
chrXV	816997	.	G	A	2633	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2007;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.30;SB=-1.464e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2666,282,0
chrXV	817202	.	A	G	3011	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=55.17;MQ0=0;QD=21.82;SB=-1.672e+03	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3044,330,0
chrXV	817208	.	C	T	2924	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=55.42;MQ0=0;QD=20.89;SB=-1.574e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2957,321,0
chrXV	818089	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.26;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1801,189,0
chrXV	818731	.	A	G	2005	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.979;QD=21.56;ReadPosRankSum=1.657;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,92:93:99:2038,222,0
chrXV	819302	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6663;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=20.27;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1452,162,0
chrXV	819348	.	C	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.55;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1563,165,0
chrXV	819520	.	G	A	1848	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7204;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.00;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,80:84:99:1881,198,0
chrXV	819609	.	A	G	1742	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.62;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1775,201,0
chrXV	819714	.	A	G	1631	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.89;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1664,186,0
chrXV	820011	.	G	T	2065	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.97;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2098,222,0
chrXV	820207	.	T	G	1620	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.592;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;MQRankSum=1.077;QD=21.89;ReadPosRankSum=1.685;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1653,177,0
chrXV	820227	.	C	G	1472	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.03;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1505,162,0
chrXV	820407	.	C	T	1501	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.44;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1534,165,0
chrXV	820504	.	T	C	2304	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=23.51;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2337,252,0
chrXV	820574	.	A	G	1687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.341;DP=78;Dels=0.00;FS=8.551;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;MQRankSum=-1.031;QD=21.63;ReadPosRankSum=3.341;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:4,74:78:99:1720,195,0
chrXV	820762	.	C	T	1548	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.82;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1581,165,0
chrXV	820854	.	C	G	1670	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=21.14;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1703,183,0
chrXV	820953	.	A	G	1940	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.05;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1973,222,0
chrXV	821142	.	C	T	2005	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.59;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2038,222,0
chrXV	821187	.	G	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.76;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1740,186,0
chrXV	821223	.	C	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.25;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1246,132,0
chrXV	821660	.	T	C	1775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=86;Dels=0.00;FS=6.285;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.807;QD=20.64;ReadPosRankSum=2.362;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:2,82:86:99:1808,198,0
chrXV	821760	.	C	T	1114	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.26;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1147,126,0
chrXV	821841	.	T	C	1397	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.68;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1430,156,0
chrXV	821870	.	G	A	1680	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.82;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1713,180,0
chrXV	822024	.	G	A	2982	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=10.8566;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=24.64;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,117:121:99:3015,315,0
chrXV	822154	.	T	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.2151;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.51;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1609,174,0
chrXV	822223	.	A	G	2301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5440;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.104;QD=23.01;ReadPosRankSum=1.663;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2334,255,0
chrXV	822957	.	T	C	310.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;DP=71;Dels=0.00;FS=6.690;HaplotypeScore=8.7011;MLEAC=1;MLEAF=0.500;MQ=47.92;MQ0=0;MQRankSum=-1.367;QD=4.37;ReadPosRankSum=-5.611;SB=-1.510e+02	GT:AD:DP:GQ:PL	0/1:46,24:71:99:340,0,135
chrXV	822978	.	T	C	575	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;QD=9.27;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:66:608,66,0
chrXV	823470	.	C	T	1219	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.35;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1252,138,0
chrXV	823557	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.70;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1155,123,0
chrXV	823625	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=21.11;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1215,126,0
chrXV	823635	.	A	G	1274	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=19.91;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1307,141,0
chrXV	823983	.	A	G	1236	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=17.66;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1269,141,0
chrXV	823992	.	G	A	1446	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.7352;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=17.01;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1479,156,0
chrXV	824210	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=17.94;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1558,174,0
chrXV	824211	.	C	T	1562	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=19.05;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1595,168,0
chrXV	824928	.	T	C	1500	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.133;QD=23.08;ReadPosRankSum=1.679;SB=-3.860e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1533,165,0
chrXV	824999	.	A	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1128,120,0
chrXV	825198	.	G	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.78;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1377,153,0
chrXV	825345	.	A	G	1775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.102;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.385;QD=24.65;ReadPosRankSum=1.684;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1808,198,0
chrXV	826031	.	T	C	554	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=4.075;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=-0.829;QD=12.04;ReadPosRankSum=1.657;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:69:587,69,0
chrXV	826034	.	C	T	577	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=11.78;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:66:610,66,0
chrXV	826212	.	A	T	999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.00;FS=6.021;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.646;QD=24.37;ReadPosRankSum=1.646;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:99:1032,108,0
chrXV	826621	.	C	T	1498	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.40;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1531,168,0
chrXV	827284	.	T	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1316,147,0
chrXV	827653	.	T	A	2815	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.4017;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.34;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2848,315,0
chrXV	828480	.	C	G	1604	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.11;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1637,177,0
chrXV	828529	.	T	C	1318	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.6739;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=16.07;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,79:82:99:1351,147,0
chrXV	828571	.	C	T	996	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=15.56;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1029,114,0
chrXV	828631	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.59;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1524,165,0
chrXV	828922	.	A	G	1878	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=3.468;HaplotypeScore=6.2806;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.429;QD=23.47;ReadPosRankSum=1.689;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1911,204,0
chrXV	829039	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.53;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1398,153,0
chrXV	829111	.	A	G	1464	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.370;QD=21.22;ReadPosRankSum=1.681;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,66:69:99:1497,162,0
chrXV	829210	.	G	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.21;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1965,207,0
chrXV	829348	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.32;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1572,174,0
chrXV	829744	.	G	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.9280;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.05;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1356,150,0
chrXV	830050	.	G	A	1052	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.63;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1085,120,0
chrXV	830744	.	T	A	705	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.225;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;MQRankSum=0.803;QD=16.79;ReadPosRankSum=-0.211;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,41:42:78:738,78,0
chrXV	830783	.	C	A	650	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=18.57;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:72:683,72,0
chrXV	830785	.	C	T	593	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.38;MQ0=0;QD=16.94;SB=-3.001e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:69:626,69,0
chrXV	830894	.	C	A	611	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=16.08;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:0,37:38:69:644,69,0
chrXV	831051	.	C	T	3076	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.2384;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=27.96;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3109,327,0
chrXV	832096	.	C	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.15;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1603,168,0
chrXV	832169	.	C	T	1392	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=22.45;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1425,150,0
chrXV	832222	.	G	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=22.61;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1548,162,0
chrXV	832326	.	G	A	1246	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=23.07;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1279,135,0
chrXV	832546	.	G	A	2329	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=6.0011;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=21.17;SB=-1.473e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2362,252,0
chrXV	832576	.	G	A	2103	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.46;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2136,228,0
chrXV	832589	.	C	G	1772	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=19.47;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1805,201,0
chrXV	832602	.	C	G	1663	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=19.80;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1696,186,0
chrXV	832664	.	T	A	795	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=18.49;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:87:828,87,0
chrXV	832710	.	T	C	915	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:948,105,0
chrXV	832805	.	A	G	1605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=67;Dels=0.00;FS=3.724;HaplotypeScore=4.9533;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.420;QD=23.96;ReadPosRankSum=1.680;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1638,177,0
chrXV	832871	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=20.01;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1514,168,0
chrXV	832893	.	A	C	1601	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6424;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;MQRankSum=-0.866;QD=17.59;ReadPosRankSum=1.575;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,87:91:99:1634,180,0
chrXV	833083	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.69;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1293,141,0
chrXV	833904	.	C	T	2255	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=18.19;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2288,252,0
chrXV	834436	.	C	T	1921	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1083;MLEAC=2;MLEAF=1.00;MQ=53.37;MQ0=0;QD=20.44;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,91:94:99:1954,204,0
chrXV	834445	.	G	A	1921	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=20.01;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1954,210,0
chrXV	834614	.	G	A	2101	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.44;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2134,222,0
chrXV	834738	.	C	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.95;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1489,159,0
chrXV	834976	.	C	T	1619	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.03;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1652,183,0
chrXV	836272	.	G	A	512	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=17.07;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:57:545,57,0
chrXV	836419	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.24;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1474,159,0
chrXV	836722	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.40;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1108,120,0
chrXV	836747	.	A	C	1097	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.85;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1130,123,0
chrXV	836858	.	C	T	995	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=14.85;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1028,117,0
chrXV	836879	.	C	T	1043	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.10;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1076,114,0
chrXV	837247	.	G	A	1360	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.30;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1393,141,0
chrXV	837437	.	G	T	1043	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.06;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1076,111,0
chrXV	837685	.	A	G	1171	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.4021;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=-1.121;QD=22.96;ReadPosRankSum=1.664;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1204,129,0
chrXV	838080	.	A	C	1020	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=19.25;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1053,117,0
chrXV	838118	.	A	G	995	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.16;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1028,114,0
chrXV	838573	.	C	T	2151	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.6688;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.44;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2184,237,0
chrXV	838975	.	A	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.60;SB=-3.690e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1464,159,0
chrXV	839011	.	A	G	1466	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=19.55;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1499,165,0
chrXV	839037	.	A	T	1416	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=1.595;QD=18.63;ReadPosRankSum=1.687;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1449,156,0
chrXV	840342	.	A	G	1251	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=16.46;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1284,141,0
chrXV	840343	.	T	C	1292	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.00;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1325,141,0
chrXV	841378	.	T	G	1601	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.64;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1634,183,0
chrXV	841912	.	G	T	2930	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.63;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2963,312,0
chrXV	842069	.	A	G	600	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.52;MQ0=0;QD=15.79;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:633,69,0
chrXV	842085	.	C	T	758	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.05;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:81:791,81,0
chrXV	842107	.	C	T	764	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=16.26;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:87:797,87,0
chrXV	842131	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.16;MQ0=0;QD=14.86;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:865,96,0
chrXV	842137	.	C	A	804	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=14.62;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:87:837,87,0
chrXV	843892	.	A	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=24.05;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1091,117,0
chrXV	845796	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=77;Dels=0.00;FS=4.886;HaplotypeScore=11.2262;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.067;QD=21.61;ReadPosRankSum=1.687;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1697,189,0
chrXV	846027	.	G	A	1790	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.57;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1823,192,0
chrXV	846446	.	T	C	1028	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1061,117,0
chrXV	846491	.	C	T	797	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.44;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:87:830,87,0
chrXV	846521	.	C	T	1088	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.65;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1121,120,0
chrXV	847286	.	C	T	2782	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.44;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2815,309,0
chrXV	848614	.	G	A	1663	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.10;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1696,180,0
chrXV	850330	.	G	T	1094	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.64;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1127,120,0
chrXV	850531	.	A	G	1630	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=21.17;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1663,180,0
chrXV	850811	.	C	T	2126	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.86;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2159,228,0
chrXV	851249	.	T	A	1830	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=17.26;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1863,201,0
chrXV	851261	.	C	T	1715	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=19.06;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1748,183,0
chrXV	852044	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.91;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1698,186,0
chrXV	852208	.	A	G	687	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-0.234;QD=18.08;ReadPosRankSum=1.639;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,36:38:78:720,78,0
chrXV	852451	.	G	A	1185	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.6870;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.11;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1218,135,0
chrXV	852538	.	C	T	1030	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.60;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1063,117,0
chrXV	854509	.	T	A	167.06	PASS	AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=1;QD=20.88;SB=-5.381e+01	GT:AD:DP:GQ:PL	1/1:1,7:8:21:200,21,0
chrXV	854531	.	T	C	153.06	PASS	AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.97;MQ0=0;QD=21.87;SB=-5.481e+01	GT:AD:DP:GQ:PL	1/1:0,7:7:21:186,21,0
chrXV	854622	.	C	A	332	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.40;MQ0=0;QD=10.37;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:39:365,39,0
chrXV	854667	.	G	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.40;MQ0=0;QD=21.70;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1639,171,0
chrXV	854717	.	C	T	2653	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.76;MQ0=0;QD=20.89;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,126:127:99:2686,297,0
chrXV	854873	.	A	G	734	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.84;MQ0=0;QD=17.90;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:84:767,84,0
chrXV	854883	.	C	T	738	filter	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.61;MQ0=0;QD=18.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,41:41:81:771,81,0
chrXV	854955	.	T	C	273	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=21.00;SB=-9.777e-03	GT:AD:DP:GQ:PL	1/1:0,13:13:33:306,33,0
chrXV	855037	.	A	G	1035	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.64;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,40:42:99:1068,117,0
chrXV	855289	.	C	T	514	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.35;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:57:547,57,0
chrXV	855747	.	T	C	559	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=12.70;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:69:592,69,0
chrXV	856028	.	C	T	1745	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.06;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1778,186,0
chrXV	856254	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.07;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1571,174,0
chrXV	856383	.	T	G	1347	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0242;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=14.33;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1380,156,0
chrXV	857553	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=21.38;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1594,168,0
chrXV	858511	.	T	C	2426	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=105;Dels=0.00;FS=2.808;HaplotypeScore=4.0665;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-1.746;QD=23.10;ReadPosRankSum=2.403;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:2,103:105:99:2459,264,0
chrXV	858879	.	A	T	2498	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.99;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2531,264,0
chrXV	859245	.	A	G	1558	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.23;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1591,177,0
chrXV	859338	.	T	G	1576	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=93;Dels=0.00;FS=3.583;HaplotypeScore=4.6682;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=1.538;QD=16.95;ReadPosRankSum=1.693;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,88:93:99:1609,177,0
chrXV	859706	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.2505;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;MQRankSum=1.630;QD=15.15;ReadPosRankSum=1.681;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:1,67:72:99:1124,102,0
chrXV	859785	.	A	G	1198	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.361;DP=56;Dels=0.00;FS=3.865;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=1.547;QD=21.39;ReadPosRankSum=0.371;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1231,115,0
chrXV	859857	.	T	C	1132	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.21;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1165,132,0
chrXV	860033	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=21.02;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1336,141,0
chrXV	860065	.	C	T	951	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=19.02;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:984,102,0
chrXV	860079	.	C	T	1026	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.73;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1059,111,0
chrXV	860178	.	G	A	1140	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.92;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1173,123,0
chrXV	860275	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=-1.497;QD=19.86;ReadPosRankSum=1.674;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1205,132,0
chrXV	860337	.	T	A	1344	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3565;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.00;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1377,147,0
chrXV	860397	.	A	G	1307	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=20.75;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1340,153,0
chrXV	860578	.	T	C	663	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=19.50;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:75:696,75,0
chrXV	860613	.	A	C	788	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.22;SB=-1.570e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:821,90,0
chrXV	860651	.	T	G	448	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=17.92;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:54:481,54,0
chrXV	860762	.	C	A	504	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=16.26;SB=-6.537e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:57:537,57,0
chrXV	860775	.	A	C	636	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.02;MQ0=0;MQRankSum=0.000;QD=18.71;ReadPosRankSum=1.631;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:1,33:34:75:669,75,0
chrXV	861020	.	G	A	623	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.07;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:69:656,69,0
chrXV	861103	.	A	G	601	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=20.03;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:72:634,72,0
chrXV	861110	.	A	G	608	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.61;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,31:31:72:641,72,0
chrXV	861195	.	C	T	675	filter	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,31:31:75:708,75,0
chrXV	861653	.	T	C	762	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.3618;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.59;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:795,87,0
chrXV	862092	.	G	A	2108	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.16;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2141,225,0
chrXV	862212	.	C	G	1119	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.05;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1152,129,0
chrXV	862224	.	A	T	1469	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=20.69;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1502,159,0
chrXV	862275	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=18.12;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1410,159,0
chrXV	862485	.	C	G	1898	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.87;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1931,210,0
chrXV	862815	.	G	C	1751	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.85;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1784,195,0
chrXV	863103	.	T	C	773	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.58;MQ0=0;QD=13.33;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:90:806,90,0
chrXV	863105	.	G	A	830	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.46;MQ0=0;QD=15.09;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:863,90,0
chrXV	863148	.	C	T	972	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=1.613;QD=16.47;ReadPosRankSum=0.239;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1005,105,0
chrXV	863403	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.81;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1596,168,0
chrXV	863724	.	A	G	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.565;QD=21.00;ReadPosRankSum=1.676;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1335,147,0
chrXV	863813	.	G	A	835	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.37;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:93:868,93,0
chrXV	863988	.	G	A	946	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.52;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:979,108,0
chrXV	864089	.	C	G	982	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=17.85;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1015,111,0
chrXV	864150	.	T	C	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9100;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.756;QD=19.90;ReadPosRankSum=1.683;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1446,162,0
chrXV	864240	.	A	G	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=73;Dels=0.00;FS=3.041;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.737;QD=20.74;ReadPosRankSum=2.347;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:2,70:73:99:1547,171,0
chrXV	864445	.	A	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=24.01;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1810,198,0
chrXV	864477	.	A	C	1794	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=23.61;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1827,201,0
chrXV	864521	.	A	G	1415	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=66;Dels=0.00;FS=3.148;HaplotypeScore=4.0578;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-1.029;QD=21.44;ReadPosRankSum=1.678;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,64:66:99:1448,156,0
chrXV	864723	.	G	A	2004	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.86;SB=-1.088e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2037,213,0
chrXV	865020	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.85;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1555,165,0
chrXV	865396	.	G	A	1497	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.34;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1530,159,0
chrXV	865788	.	A	G	1920	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.86;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1953,210,0
chrXV	865794	.	C	G	2002	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.85;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2035,222,0
chrXV	866920	.	G	A	2042	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.21;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2075,219,0
chrXV	867169	.	T	G	2457	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.292;QD=24.33;ReadPosRankSum=1.698;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2490,273,0
chrXV	867268	.	A	C	2092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.3371;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=1.446;QD=19.19;ReadPosRankSum=1.700;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2125,240,0
chrXV	868576	.	C	T	1554	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.55;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1587,171,0
chrXV	869837	.	T	C	892	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;DP=42;Dels=0.00;FS=7.803;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=-0.696;QD=21.24;ReadPosRankSum=2.088;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:2,39:42:99:925,102,0
chrXV	869955	.	G	A	1474	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.40;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1507,162,0
chrXV	872742	.	G	A	1595	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.45;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1628,174,0
chrXV	873866	.	T	C	1195	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.942;QD=20.25;ReadPosRankSum=1.672;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:1,56:59:99:1228,135,0
chrXV	873940	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.44;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1514,165,0
chrXV	874666	.	T	C	3077	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.072;QD=24.42;ReadPosRankSum=1.677;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:1,125:126:99:3110,339,0
chrXV	875332	.	A	T	1583	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7042;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.39;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1616,180,0
chrXV	875555	.	T	C	2633	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.940;DP=117;Dels=0.00;FS=11.940;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.096;QD=22.50;ReadPosRankSum=2.922;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:3,113:117:99:2666,285,0
chrXV	875886	.	G	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.24;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1551,168,0
chrXV	876366	.	G	C	1561	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.96;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1594,177,0
chrXV	885437	.	T	C	2614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;DP=124;Dels=0.00;FS=3.046;HaplotypeScore=15.7736;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=2.152;QD=21.08;ReadPosRankSum=2.410;SB=-1.482e+03	GT:AD:DP:GQ:PL	1/1:2,122:124:99:2647,294,0
chrXV	885669	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.62;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1641,180,0
chrXV	885692	.	A	G	1360	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.3995;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=19.43;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1393,156,0
chrXV	885914	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.1929;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;MQRankSum=1.258;QD=18.64;ReadPosRankSum=1.685;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1412,159,0
chrXV	887043	.	G	A	1739	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.29;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1772,183,0
chrXV	887066	.	C	T	1203	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.71;MQ0=0;QD=18.23;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1236,129,0
chrXV	887264	.	T	C	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=3.641;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.545;QD=20.97;ReadPosRankSum=1.592;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1585,177,0
chrXV	887295	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=22.47;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1853,198,0
chrXV	887669	.	A	G	1984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=88;Dels=0.00;FS=7.159;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.817;QD=22.55;ReadPosRankSum=2.393;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:2,85:88:99:2017,225,0
chrXV	888126	.	A	G	1032	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.50;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1065,114,0
chrXV	888445	.	A	G	2172	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=91;Dels=0.00;FS=6.368;HaplotypeScore=6.7761;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=1.275;QD=23.87;ReadPosRankSum=1.694;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2205,243,0
chrXV	888479	.	A	G	1429	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.44;MQ0=0;QD=22.33;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1462,159,0
chrXV	888521	.	C	T	1398	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.815;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;MQRankSum=1.681;QD=20.56;ReadPosRankSum=1.681;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1431,159,0
chrXV	888666	.	T	C	1294	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.173;QD=20.87;ReadPosRankSum=1.676;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1327,144,0
chrXV	888854	.	T	C	36.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.232;DP=73;Dels=0.01;FS=26.222;HaplotypeScore=107.0757;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;MQRankSum=1.945;QD=0.51;ReadPosRankSum=-1.605;SB=2.03	GT:AD:DP:GQ:PL	1/1:52,18:72:9:69,9,0
chrXV	888858	.	T	C	32.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DP=78;Dels=0.00;FS=3.038;HaplotypeScore=107.6354;MLEAC=1;MLEAF=0.500;MQ=51.33;MQ0=0;MQRankSum=0.541;QD=0.41;ReadPosRankSum=2.079;SB=-1.630e+02	GT:AD:DP:GQ:PL	0/1:41,35:78:62:62,0,111
chrXV	888859	.	T	C	11.34	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;DP=79;Dels=0.00;FS=15.411;HaplotypeScore=106.5750;MLEAC=1;MLEAF=0.500;MQ=51.45;MQ0=0;MQRankSum=-0.701;QD=0.14;ReadPosRankSum=1.106;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:66,12:79:41:41,0,178
chrXV	888888	.	G	A	925	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=13.03;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:958,102,0
chrXV	888891	.	C	A	915	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=12.20;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:948,102,0
chrXV	889219	.	C	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=18.63;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1598,177,0
chrXV	889336	.	A	G	1781	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.40;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1814,198,0
chrXV	889418	.	T	C	1153	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.86;MQ0=0;QD=19.88;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1186,135,0
chrXV	889442	.	T	C	829	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.77;MQ0=0;QD=17.27;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:862,96,0
chrXV	889462	.	A	G	725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=0;MQRankSum=-1.532;QD=13.94;ReadPosRankSum=1.666;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:84:758,84,0
chrXV	889468	.	A	T	815	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.53;MQ0=0;QD=14.55;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:90:848,90,0
chrXV	889474	.	T	C	695	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.98;MQ0=0;QD=12.64;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:81:728,81,0
chrXV	889495	.	A	G	609	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.33;MQ0=0;QD=11.94;SB=-1.880e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:72:642,72,0
chrXV	889642	.	T	C	758	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=19.44;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:87:791,87,0
chrXV	889741	.	G	A	161.06	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=9.47;SB=-5.607e+01	GT:AD:DP:GQ:PL	1/1:0,16:17:21:194,21,0
chrXV	889988	.	A	T	874	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.62;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:96:907,96,0
chrXV	890036	.	C	G	932	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=20.71;SB=-3.170e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:965,105,0
chrXV	890314	.	A	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=9.1623;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=16.86;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1196,132,0
chrXV	890409	.	T	C	1053	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.87;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1086,120,0
chrXV	890476	.	C	T	1259	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.8298;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=20.31;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1292,138,0
chrXV	890575	.	A	C	1786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.330;DP=82;Dels=0.00;FS=6.515;HaplotypeScore=6.7367;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=1.217;QD=21.78;ReadPosRankSum=2.390;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1819,201,0
chrXV	890776	.	G	A	768	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.33;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:801,84,0
chrXV	890797	.	A	G	775	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=20.95;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:808,90,0
chrXV	890957	.	G	A	2124	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.60;SB=-1.209e+03	GT:AD:DP:GQ:PL	1/1:0,89:90:99:2157,225,0
chrXV	891275	.	G	A	1656	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.79;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1689,177,0
chrXV	891444	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.9208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.684;QD=17.78;ReadPosRankSum=0.433;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1313,144,0
chrXV	891508	.	A	G	1519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-1.107;QD=21.10;ReadPosRankSum=1.684;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1552,171,0
chrXV	891617	.	G	A	2503	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.61;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2536,267,0
chrXV	891758	.	C	T	1282	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=24.65;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1315,141,0
chrXV	891827	.	G	C	1197	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=22.17;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1230,132,0
chrXV	892191	.	G	A	914	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;QD=16.93;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:947,99,0
chrXV	892195	.	T	C	910	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;MQRankSum=-0.577;QD=15.17;ReadPosRankSum=1.675;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:943,105,0
chrXV	892286	.	A	G	1708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;DP=73;Dels=0.00;FS=3.582;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=-1.020;QD=23.40;ReadPosRankSum=1.637;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1741,192,0
chrXV	892301	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=22.97;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1618,171,0
chrXV	892334	.	T	G	1658	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=23.03;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1691,186,0
chrXV	906271	.	T	C	2901	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.81;SB=-1.246e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2934,327,0
chrXV	906511	.	G	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=18.17;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1741,192,0
chrXV	907000	.	T	C	2040	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=21.94;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2073,225,0
chrXV	907093	.	G	A	1791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.4095;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.448;QD=20.12;ReadPosRankSum=1.693;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1824,198,0
chrXV	907705	.	T	C	1629	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.68;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1662,180,0
chrXV	908462	.	C	T	2098	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=25.90;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2131,225,0
chrXV	908634	.	A	G	1951	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.7409;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=22.43;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1984,219,0
chrXV	908860	.	T	A	1792	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1311;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.84;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1825,192,0
chrXV	909091	.	T	C	155.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;DP=41;Dels=0.00;FS=18.778;HaplotypeScore=4.4849;MLEAC=1;MLEAF=0.500;MQ=57.71;MQ0=0;MQRankSum=0.839;QD=3.78;ReadPosRankSum=2.319;SB=-1.700e+02	GT:AD:DP:GQ:PL	0/1:8,33:41:32:185,0,32
chrXV	910022	.	G	A	2910	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.2169;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.05;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2943,306,0
chrXV	910701	.	T	G	1178	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.8810;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1211,135,0
chrXV	911862	.	G	A	648	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.60;SB=-2.320e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:681,69,0
chrXV	911894	.	T	C	575	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=16.43;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:66:608,66,0
chrXV	911906	.	T	C	652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=42;Dels=0.00;FS=2.770;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;MQRankSum=-0.738;QD=15.52;ReadPosRankSum=2.274;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:2,40:42:75:685,75,0
chrXV	911963	.	A	G	698	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=17.45;SB=-2.640e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:731,81,0
chrXV	912582	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=22.02;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1464,162,0
chrXV	912636	.	C	T	2153	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.66;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2186,231,0
chrXV	912729	.	C	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.7077;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.14;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1792,189,0
chrXV	914264	.	T	C	1165	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.333;QD=21.98;ReadPosRankSum=1.666;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1198,135,0
chrXV	914282	.	C	T	1192	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.75;MQ0=0;QD=21.67;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1225,132,0
chrXV	914306	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.9536;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=22.78;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1354,144,0
chrXV	914376	.	G	A	1916	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.05;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1949,204,0
chrXV	914651	.	A	G	2190	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=4.168;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;MQRankSum=0.258;QD=23.30;ReadPosRankSum=1.658;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2223,246,0
chrXV	915217	.	T	C	1048	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.41;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1081,120,0
chrXV	915310	.	C	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.3583;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=17.55;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,67:71:99:1279,138,0
chrXV	915402	.	T	A	1979	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=1.012;QD=19.59;ReadPosRankSum=1.046;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2012,213,0
chrXV	915406	.	T	C	2044	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=20.04;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2077,234,0
chrXV	915416	.	A	G	1691	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=17.61;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1724,192,0
chrXV	915553	.	A	C	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=5.063;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.112;QD=23.33;ReadPosRankSum=1.597;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1853,201,0
chrXV	915687	.	T	C	1941	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=10.9722;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;MQRankSum=1.386;QD=20.87;ReadPosRankSum=1.694;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:1,89:93:99:1974,213,0
chrXV	915759	.	G	A	1831	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=22.06;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1864,201,0
chrXV	915853	.	T	C	1596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;DP=71;Dels=0.00;FS=6.748;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-2.307;QD=22.48;ReadPosRankSum=2.271;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:2,67:71:99:1629,180,0
chrXV	915979	.	G	T	2005	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.46;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2038,216,0
chrXV	916053	.	C	T	2058	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=20.58;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2091,228,0
chrXV	916056	.	C	T	2089	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.48;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2122,228,0
chrXV	916094	.	C	G	1527	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=19.33;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1560,171,0
chrXV	916139	.	A	T	1349	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.2314;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=19.55;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1382,147,0
chrXV	916804	.	A	G	1498	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.24;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1531,171,0
chrXV	916839	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.88;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1802,201,0
chrXV	916956	.	G	A	1834	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=23.82;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1867,189,0
chrXV	917028	.	T	G	950	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=17.92;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:983,105,0
chrXV	917052	.	T	A	913	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.56;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:946,108,0
chrXV	917139	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.68;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1359,150,0
chrXV	917835	.	G	A	1391	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.3038;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.44;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1424,153,0
chrXV	918009	.	A	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.2859;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=17.86;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1408,156,0
chrXV	918228	.	T	A	2388	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.74;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2421,255,0
chrXV	918499	.	G	A	2743	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.67;SB=-1.396e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2776,309,0
chrXV	918899	.	T	C	2337	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.81;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2370,261,0
chrXV	919242	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.848;DP=86;Dels=0.00;FS=6.147;HaplotypeScore=5.0010;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.541;QD=18.79;ReadPosRankSum=2.871;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:3,83:86:99:1649,180,0
chrXV	919734	.	A	G	1179	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.68;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1212,132,0
chrXV	919749	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=3.039;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.199;QD=17.36;ReadPosRankSum=2.318;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1005,111,0
chrXV	919989	.	T	C	1443	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.32;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1476,162,0
chrXV	920281	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.49;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1078,117,0
chrXV	920571	.	T	C	1529	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=19.60;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1562,174,0
chrXV	920814	.	A	C	1551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6318;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.549;QD=18.91;ReadPosRankSum=1.648;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1584,177,0
chrXV	920857	.	G	A	2389	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.89;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2422,255,0
chrXV	921138	.	C	T	1769	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.57;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1802,201,0
chrXV	921242	.	C	A	2917	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=24.11;SB=-1.464e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2950,309,0
chrXV	921890	.	A	G	1177	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.39;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1210,132,0
chrXV	922090	.	C	T	1168	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.49;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1201,129,0
chrXV	922957	.	C	T	456	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=15.72;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:51:489,51,0
chrXV	923184	.	T	G	962	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.866;QD=23.46;ReadPosRankSum=1.646;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:1,40:41:99:995,111,0
chrXV	923567	.	T	C	1675	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.47;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1708,189,0
chrXV	923937	.	T	A	2254	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.54;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2287,240,0
chrXV	924048	.	G	A	1788	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.07;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1821,189,0
chrXV	924306	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.85;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1409,150,0
chrXV	924397	.	T	C	1901	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.06;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1934,210,0
chrXV	924786	.	T	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.4272;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.02;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1795,195,0
chrXV	924831	.	T	C	1198	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.97;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1231,135,0
chrXV	925008	.	G	A	845	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=17.98;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:93:878,93,0
chrXV	925525	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.66;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1358,144,0
chrXV	925556	.	C	T	968	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=21.04;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1001,108,0
chrXV	925933	.	A	G	1406	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=19.80;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1439,159,0
chrXV	926126	.	C	T	1774	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.1628;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.63;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1807,192,0
chrXV	926224	.	T	C	1380	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=24.64;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1413,156,0
chrXV	926881	.	G	A	1834	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.10;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1867,195,0
chrXV	926925	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.77;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1668,174,0
chrXV	927574	.	G	A	1010	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=18.70;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1043,108,0
chrXV	927580	.	G	A	997	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=18.13;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1030,108,0
chrXV	927595	.	G	A	1027	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=18.02;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1060,111,0
chrXV	927616	.	T	A	978	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.46;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1011,105,0
chrXV	928111	.	T	C	1705	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.302;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=0.742;QD=22.14;ReadPosRankSum=1.687;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1738,192,0
chrXV	928129	.	G	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=21.73;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1619,171,0
chrXV	928570	.	G	A	1468	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.28;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1501,162,0
chrXV	928579	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=3.291;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=1.299;QD=21.59;ReadPosRankSum=1.624;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1415,156,0
chrXV	928755	.	A	G	2003	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=85;Dels=0.00;FS=6.502;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=1.452;QD=23.56;ReadPosRankSum=2.245;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:2,82:85:99:2036,219,0
chrXV	929121	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.83;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1403,147,0
chrXV	929212	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=21.73;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1576,174,0
chrXV	929329	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=22.48;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1247,135,0
chrXV	929593	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.00;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1496,165,0
chrXV	929887	.	T	C	1800	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.69;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1833,207,0
chrXV	930026	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.49;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1419,153,0
chrXV	930118	.	A	G	1743	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=22.35;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1776,201,0
chrXV	930131	.	T	C	1941	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.0161;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=22.06;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1974,216,0
chrXV	930199	.	A	G	2282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=2.981;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=-0.768;QD=22.59;ReadPosRankSum=2.401;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:2,99:101:99:2315,255,0
chrXV	930310	.	T	C	1784	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.02;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1817,201,0
chrXV	930505	.	A	G	42.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;DP=114;Dels=0.00;FS=3.875;HaplotypeScore=124.9571;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=0.916;QD=0.37;ReadPosRankSum=4.626;SB=-6.001e+01	GT:AD:DP:GQ:PL	0/1:74,40:114:60:72,0,60
chrXV	930799	.	A	G	1507	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=23.18;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1540,171,0
chrXV	931409	.	C	G	1825	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=25.70;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1858,201,0
chrXV	931516	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.41;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1339,150,0
chrXV	931550	.	A	C	1179	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.98;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1212,132,0
chrXV	931616	.	T	C	707	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=18.13;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:81:740,81,0
chrXV	931623	.	A	G	813	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=18.91;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:846,93,0
chrXV	931662	.	G	A	958	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=17.42;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:991,105,0
chrXV	931682	.	A	C	26.06	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.5604;MLEAC=1;MLEAF=0.500;MQ=52.55;MQ0=0;MQRankSum=0.498;QD=0.42;ReadPosRankSum=0.777;SB=-5.461e+02	GT:AD:DP:GQ:PL	0/1:2,60:62:17:56,0,17
chrXV	932032	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.4548;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=19.29;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1441,162,0
chrXV	932327	.	C	T	1220	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.92;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1253,132,0
chrXV	932424	.	C	T	902	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=16.11;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:935,99,0
chrXV	933122	.	T	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=23.41;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1531,159,0
chrXV	933245	.	G	A	1512	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.00;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1545,162,0
chrXV	933470	.	C	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.9219;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=18.73;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1606,180,0
chrXV	933555	.	C	T	773	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.40;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:806,84,0
chrXV	933560	.	C	T	729	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.36;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:84:762,84,0
chrXV	933812	.	G	A	1712	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.81;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1745,186,0
chrXV	933920	.	A	G	993	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=20.69;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1026,114,0
chrXV	934022	.	C	T	991	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.02;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1024,108,0
chrXV	934060	.	T	C	846	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.67;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:96:879,96,0
chrXV	934286	.	T	C	2471	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;MQRankSum=-0.554;QD=24.71;ReadPosRankSum=1.697;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2504,276,0
chrXV	934730	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.50;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1345,150,0
chrXV	934817	.	G	A	1423	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.23;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1456,153,0
chrXV	935126	.	G	A	1255	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.92;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1288,135,0
chrXV	935276	.	T	C	1647	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=23.20;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1680,186,0
chrXV	935480	.	G	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=24.60;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1337,144,0
chrXV	935504	.	C	T	1243	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=19.42;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1276,135,0
chrXV	935527	.	T	C	1038	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=15.73;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1071,117,0
chrXV	936032	.	G	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.79;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1253,132,0
chrXV	936401	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=19.35;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1136,126,0
chrXV	936652	.	A	C	3322.01	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.07;MQ0=0;QD=24.98;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3322,363,0
chrXV	937658	.	C	G	1416	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9457;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.94;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1449,156,0
chrXV	937693	.	G	A	1336	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.65;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1369,141,0
chrXV	937769	.	T	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.26;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1391,153,0
chrXV	937997	.	G	T	1372	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.11;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1405,147,0
chrXV	938096	.	T	A	1800	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=24.32;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1833,195,0
chrXV	938134	.	G	T	1723	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=23.93;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1756,186,0
chrXV	938201	.	C	T	1343	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.02;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1376,144,0
chrXV	938464	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=89;Dels=0.00;FS=4.179;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.487;QD=18.56;ReadPosRankSum=1.693;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1685,186,0
chrXV	938476	.	A	G	1557	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=0.483;QD=18.10;ReadPosRankSum=1.692;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1590,174,0
chrXV	938492	.	T	C	1528	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=55.79;MQ0=0;QD=17.77;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1561,177,0
chrXV	938921	.	T	C	2030	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.37;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2063,225,0
chrXV	939173	.	T	G	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=4.533;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.952;QD=21.90;ReadPosRankSum=1.635;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1588,177,0
chrXV	939870	.	C	T	1114	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=24.76;SB=-2.580e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1147,123,0
chrXV	940002	.	T	C	1634	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.79;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1667,180,0
chrXV	940429	.	T	C	2161	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8399;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=22.99;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2194,243,0
chrXV	940454	.	A	G	1507	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=3.917;HaplotypeScore=3.4629;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.582;QD=21.84;ReadPosRankSum=1.682;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1540,168,0
chrXV	940838	.	G	A	892	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.76;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:96:925,96,0
chrXV	941405	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=20.39;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1399,153,0
chrXV	941494	.	G	A	868	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;QD=24.11;SB=-2.800e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:96:901,96,0
chrXV	941592	.	C	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.20;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1054,111,0
chrXV	941706	.	C	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=19.85;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1085,123,0
chrXV	941715	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=20.04;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1155,129,0
chrXV	941765	.	G	T	1120	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=47.79;MQ0=0;QD=17.23;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1153,120,0
chrXV	941767	.	G	A	1033	SnpCluster	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.88;MQ0=0;QD=16.93;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1066,114,0
chrXV	941769	.	T	C	1005	SnpCluster	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=16.75;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1038,114,0
chrXV	941796	.	G	A	1028	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=17.42;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1061,114,0
chrXV	941898	.	C	T	994	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=20.29;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1027,108,0
chrXV	942153	.	T	C	1061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.428;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.2111;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;MQRankSum=1.185;QD=17.98;ReadPosRankSum=1.003;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,56:59:99:1094,117,0
chrXV	942165	.	C	T	1216	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.6529;MLEAC=2;MLEAF=1.00;MQ=51.06;MQ0=0;QD=18.71;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1249,129,0
chrXV	942192	.	C	T	1142	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5787;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=17.84;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1175,123,0
chrXV	942317	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.56;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1258,135,0
chrXV	942594	.	T	C	1737	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=23.79;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1770,192,0
chrXV	942722	.	T	C	1848	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2253;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.54;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1881,207,0
chrXV	942759	.	T	C	1781	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.13;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1814,198,0
chrXV	943167	.	A	C	1771	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.5696;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.26;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1804,201,0
chrXV	943283	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.32;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1547,168,0
chrXV	943688	.	C	T	1911	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.8621;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.12;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:1944,204,0
chrXV	944039	.	A	T	1611	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=23.01;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1644,171,0
chrXV	944430	.	T	C	650	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=14.77;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:75:683,75,0
chrXV	945621	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=18.81;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1557,165,0
chrXV	945624	.	T	C	1459	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=18.24;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1492,165,0
chrXV	945647	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=15.79;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1265,135,0
chrXV	945663	.	T	G	1347	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.730;QD=16.04;ReadPosRankSum=1.690;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1380,156,0
chrXV	945784	.	C	T	2925	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.00;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2958,309,0
chrXV	946062	.	T	C	2963	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=148;Dels=0.00;FS=7.079;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.006;QD=20.02;ReadPosRankSum=1.709;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:1,147:148:99:2996,336,0
chrXV	946446	.	A	G	1036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-1.490;QD=11.91;ReadPosRankSum=1.652;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1069,117,0
chrXV	946490	.	A	C	1676	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.4604;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=14.96;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:1709,189,0
chrXV	946686	.	C	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.01;FS=0.000;HaplotypeScore=4.2484;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.71;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1586,165,0
chrXV	948546	.	A	G	1183	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=19.08;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1216,135,0
chrXV	948633	.	T	C	1270	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.48;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1303,144,0
chrXV	948744	.	T	G	1734	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=4.352;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=1.601;QD=21.95;ReadPosRankSum=1.644;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1767,189,0
chrXV	948819	.	A	G	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.037;DP=64;Dels=0.00;FS=5.412;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=-0.319;QD=19.05;ReadPosRankSum=3.314;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:4,60:64:99:1252,138,0
chrXV	949161	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.13;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1073,111,0
chrXV	949723	.	A	T	4330.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=188;Dels=0.00;FS=8.781;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.076;QD=23.03;ReadPosRankSum=2.357;SB=-1.616e+03	GT:AD:DP:GQ:PL	1/1:2,186:188:99:4330,462,0
chrXV	950909	.	G	A	1589	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.38;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1622,168,0
chrXV	952140	.	G	A	1998	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.13;MQ0=0;QD=23.51;SB=-1.112e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2031,210,0
chrXV	952737	.	A	G	1636	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1669,180,0
chrXV	953437	.	G	A	1818	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.92;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1851,192,0
chrXV	954766	.	A	G	1119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.611;QD=18.65;ReadPosRankSum=1.672;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,56:60:99:1152,126,0
chrXV	954952	.	A	T	1255	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.82;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1288,138,0
chrXV	955009	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=21.69;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1486,156,0
chrXV	955017	.	T	C	1237	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=19.63;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1270,138,0
chrXV	955457	.	A	G	1108	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=57;Dels=0.00;FS=2.999;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.287;QD=19.44;ReadPosRankSum=2.362;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:2,54:57:99:1141,126,0
chrXV	955708	.	C	T	1124	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.04;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1157,120,0
chrXV	956028	.	G	A	1299	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=24.98;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1332,141,0
chrXV	956880	.	G	C	1965	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=9.1991;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.36;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:1998,222,0
chrXV	957137	.	A	G	1465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.253;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=7.0858;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.970;QD=19.53;ReadPosRankSum=1.891;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1498,165,0
chrXV	959223	.	A	G	2876	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=20.54;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:2909,318,0
chrXV	959231	.	T	C	2608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;MQRankSum=-1.356;QD=20.22;ReadPosRankSum=1.705;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2641,300,0
chrXV	959394	.	A	G	2176	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=22.43;SB=-1.165e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2209,237,0
chrXV	959820	.	G	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.13;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1560,162,0
chrXV	960232	.	A	C	1885	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.27;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1918,216,0
chrXV	960269	.	A	G	1818	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=22.44;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1851,207,0
chrXV	960428	.	G	A	996	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=22.64;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1029,111,0
chrXV	960682	.	A	C	670	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.63;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:75:703,75,0
chrXV	962519	.	A	G	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.7082;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.364;QD=20.78;ReadPosRankSum=1.689;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1737,195,0
chrXV	963233	.	A	G	2186	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.831;HaplotypeScore=9.8112;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.337;QD=20.62;ReadPosRankSum=2.334;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2219,243,0
chrXV	964661	.	T	C	1443	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.0752;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.375;QD=19.50;ReadPosRankSum=1.685;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1476,168,0
chrXV	965759	.	G	A	2627	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=23.46;SB=-1.577e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2660,273,0
chrXV	966067	.	C	A	2746	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.9783;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=23.27;SB=-1.459e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2779,294,0
chrXV	966325	.	A	G	555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.545;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.6496;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.234;QD=15.00;ReadPosRankSum=1.639;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:1,36:37:63:588,63,0
chrXV	966428	.	C	T	1494	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1527,156,0
chrXV	966472	.	G	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.4368;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.33;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2024,216,0
chrXV	966610	.	A	G	1886	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.49;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1919,201,0
chrXV	966621	.	A	G	1806	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.15;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1839,210,0
chrXV	966892	.	A	G	1701	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2496;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.96;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1734,186,0
chrXV	967862	.	G	A	1453	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.6402;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=18.87;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1486,153,0
chrXV	967879	.	A	C	1101	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;MQRankSum=-1.613;QD=18.66;ReadPosRankSum=1.673;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:1,57:59:99:1134,129,0
chrXV	968186	.	G	A	1455	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.10;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1488,159,0
chrXV	968286	.	T	A	644	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=18.94;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:75:677,75,0
chrXV	968332	.	T	G	776	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=16.87;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:90:809,90,0
chrXV	968360	.	C	T	772	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=16.43;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:87:805,87,0
chrXV	968440	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.7259;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.73;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1173,129,0
chrXV	968617	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.76;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1341,147,0
chrXV	968647	.	T	C	1218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=0.152;QD=21.37;ReadPosRankSum=1.672;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1251,138,0
chrXV	968773	.	C	T	1055	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=52.64;MQ0=0;QD=20.29;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1088,120,0
chrXV	968822	.	G	A	1220	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=23.46;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1253,135,0
chrXV	968865	.	C	T	1072	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.33;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1105,117,0
chrXV	968882	.	C	T	1174	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=20.60;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1207,126,0
chrXV	968942	.	C	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=19.54;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1264,135,0
chrXV	968970	.	C	T	1333	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.46;MQ0=0;QD=21.85;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1366,144,0
chrXV	968991	.	C	T	1407	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=20.69;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1440,150,0
chrXV	969023	.	A	G	1270	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=55.51;MQ0=0;QD=18.96;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1303,144,0
chrXV	969046	.	G	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.76;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1215,129,0
chrXV	969067	.	T	C	975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;MQRankSum=-1.247;QD=19.50;ReadPosRankSum=1.663;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1008,111,0
chrXV	969164	.	A	G	702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;MQRankSum=-0.260;QD=17.55;ReadPosRankSum=1.646;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:81:735,81,0
chrXV	969177	.	C	T	725	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.57;MQ0=0;QD=18.12;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:758,81,0
chrXV	969193	.	T	C	658	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.46;MQ0=0;QD=14.62;SB=-3.870e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:75:691,75,0
chrXV	969198	.	T	C	714	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;QD=15.19;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:81:747,81,0
chrXV	969237	.	C	T	1137	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=21.06;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1170,123,0
chrXV	969272	.	G	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.94;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1429,159,0
chrXV	970097	.	T	C	1767	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=22.65;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1800,201,0
chrXV	970105	.	A	T	1843	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.32;MQ0=0;QD=23.04;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1876,198,0
chrXV	970110	.	G	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.08;MQ0=0;QD=21.95;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1877,201,0
chrXV	970141	.	C	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=35.72;MQ0=0;QD=17.36;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1196,129,0
chrXV	970171	.	C	G	819	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=14.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:93:852,93,0
chrXV	970172	.	C	T	762	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.22;MQ0=0;QD=13.61;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,56:56:93:795,93,0
chrXV	970181	.	C	T	841	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.14;MQ0=0;QD=14.50;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,58:58:93:874,93,0
chrXV	970186	.	G	A	792	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.01;MQ0=0;QD=12.77;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:87:825,87,0
chrXV	970210	.	A	G	47.97	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=0.80;SB=-9.818e-01	GT:AD:DP:GQ:PL	1/1:0,60:60:9:80,9,0
chrXV	970213	.	A	G	742	filter	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.16;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,61:61:84:775,84,0
chrXV	970228	.	T	A	940	filter	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.86;MQ0=0;QD=13.62;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,69:69:99:973,105,0
chrXV	970235	.	T	C	1041	filter	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.87;MQ0=0;QD=14.07;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1074,114,0
chrXV	970266	.	A	G	1245	filter	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7605;MLEAC=2;MLEAF=1.00;MQ=28.90;MQ0=0;QD=13.39;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1278,141,0
chrXV	976308	.	T	C	300	filter	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=20.00;SB=-8.426e-03	GT:AD:DP:GQ:PL	1/1:0,15:15:36:333,36,0
chrXV	976509	.	T	C	424	filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.32;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,19:19:51:457,51,0
chrXV	977145	.	G	C	1141	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.37;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1174,132,0
chrXV	977151	.	T	C	1040	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;MQRankSum=-0.030;QD=17.93;ReadPosRankSum=1.672;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:99:1073,120,0
chrXV	977626	.	A	T	1626	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.569;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=-1.121;QD=19.13;ReadPosRankSum=1.691;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1659,177,0
chrXV	978361	.	T	G	2133	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.313;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=1.174;QD=19.75;ReadPosRankSum=2.404;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:2,106:108:99:2166,234,0
chrXV	978362	.	T	A	2260	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=20.73;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2293,237,0
chrXV	978446	.	A	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.54;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1562,165,0
chrXV	978614	.	T	G	2484	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.21;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2517,282,0
chrXV	980701	.	A	T	2407	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.8820;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=23.83;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,99:101:99:2440,261,0
chrXV	987547	.	A	G	768	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=55;Dels=0.00;FS=2.646;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.982;QD=13.96;ReadPosRankSum=2.872;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:3,52:55:87:801,87,0
chrXV	987667	.	G	A	662	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=15.76;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:75:695,75,0
chrXV	987922	.	G	C	866	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.14;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:899,99,0
chrXV	987985	.	C	A	1077	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.98;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1110,117,0
chrXV	988096	.	G	A	906	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=23.23;SB=-1.280e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:99:939,102,0
chrXV	988560	.	C	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.20;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1489,162,0
chrXV	988671	.	C	T	1273	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.5040;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.29;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1306,138,0
chrXV	988696	.	G	A	552	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=12.00;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,44:46:66:585,66,0
chrXV	988993	.	C	T	1965	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=23.12;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1998,210,0
chrXV	989061	.	T	C	1003	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.1775;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.193;QD=21.80;ReadPosRankSum=1.655;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1036,114,0
chrXV	989204	.	G	A	2344	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.7653;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.74;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2377,249,0
chrXV	989418	.	G	A	783	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=17.80;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:90:816,90,0
chrXV	990643	.	T	A	1125	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=60;Dels=0.00;FS=3.906;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=0.617;QD=18.75;ReadPosRankSum=1.615;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1158,126,0
chrXV	992008	.	T	C	1437	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=21.13;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1470,162,0
chrXV	993116	.	C	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.96;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1563,171,0
chrXV	993617	.	G	A	1390	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.79;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1423,150,0
chrXV	993678	.	A	G	1211	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=20.53;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1244,141,0
chrXV	993703	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.68;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1274,141,0
chrXV	994342	.	T	C	1634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.250;DP=74;Dels=0.00;FS=7.360;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;MQRankSum=-0.450;QD=22.08;ReadPosRankSum=2.383;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1667,186,0
chrXV	994833	.	T	C	1521	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.12;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1554,174,0
chrXV	996769	.	A	T	2146	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=88;Dels=0.00;FS=3.317;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.236;QD=24.39;ReadPosRankSum=1.693;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2179,228,0
chrXV	997483	.	C	G	1320	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1353,147,0
chrXV	997902	.	G	C	1230	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=20.16;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1263,138,0
chrXV	998245	.	C	A	685	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=17.56;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,39:39:75:718,75,0
chrXV	998921	.	G	A	1692	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.56;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1725,189,0
chrXV	999036	.	G	A	2116	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.24;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2149,234,0
chrXV	999385	.	T	C	1646	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.70;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1679,183,0
chrXV	999645	.	G	A	2212	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.6221;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.80;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2245,237,0
chrXV	999686	.	T	C	1565	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.68;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1598,171,0
chrXV	1000192	.	G	A	2110	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=6.7153;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.44;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2143,222,0
chrXV	1002323	.	C	G	1428	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.62;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1461,162,0
chrXV	1002519	.	C	T	2829	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=8.9081;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.76;SB=-1.637e+03	GT:AD:DP:GQ:PL	1/1:0,129:130:99:2862,303,0
chrXV	1003120	.	A	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.19;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1507,159,0
chrXV	1003254	.	A	T	1821	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=23.05;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1854,195,0
chrXV	1003317	.	C	A	1831	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.54;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1864,192,0
chrXV	1003494	.	G	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=20.98;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1187,126,0
chrXV	1003790	.	T	C	919	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.55;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:952,105,0
chrXV	1003809	.	C	A	873	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.40;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:906,96,0
chrXV	1004045	.	C	A	896	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=24.22;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:99:929,99,0
chrXV	1004117	.	C	A	25.78	LowQual;filter	AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=15.4243;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=1.17;SB=-2.358e+02	GT:AD:DP:GQ:PL	1/1:0,22:22:6:57,6,0
chrXV	1004168	.	A	T	997	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.67;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1030,108,0
chrXV	1004312	.	A	C	243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-0.694;QD=12.15;ReadPosRankSum=1.561;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:1,19:20:30:276,30,0
chrXV	1004393	.	T	A	309	PASS	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.17;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,18:18:36:342,36,0
chrXV	1004534	.	T	C	321	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.404;DP=21;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.908;QD=15.29;ReadPosRankSum=1.569;SB=-2.120e+02	GT:AD:DP:GQ:PL	1/1:1,20:21:39:354,39,0
chrXV	1004868	.	A	T	799	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.97;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:87:832,87,0
chrXV	1005286	.	C	A	946	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.50;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:979,102,0
chrXV	1005320	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=23.37;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1155,126,0
chrXV	1007685	.	G	C	1358	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1391,153,0
chrXV	1008305	.	C	T	1805	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=22.01;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1838,204,0
chrXV	1008507	.	C	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=17.02;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1054,114,0
chrXV	1011045	.	C	T	1520	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.69;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1553,162,0
chrXV	1013025	.	C	G	26.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;DP=10;Dels=0.00;FS=10.792;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=57.12;MQ0=0;MQRankSum=-0.676;QD=2.60;ReadPosRankSum=-0.336;SB=-1.404e+01	GT:AD:DP:GQ:PL	0/1:5,5:10:56:56,0,62
chrXV	1013029	.	A	C	53.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=9;Dels=0.00;FS=7.782;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-0.361;QD=6.00;ReadPosRankSum=2.219;SB=-2.301e+01	GT:AD:DP:GQ:PL	1/1:4,5:9:9:86,9,0
chrXV	1014976	.	C	T	1279	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.68;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1312,138,0
chrXV	1016870	.	G	A	1306	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.64;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1339,141,0
chrXV	1022673	.	A	T	1045	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.66;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1078,117,0
chrXV	1022685	.	T	C	1108	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.94;MQ0=0;QD=19.79;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1141,126,0
chrXV	1022713	.	C	G	1064	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=18.03;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1097,120,0
chrXV	1022736	.	T	C	725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.461;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;MQRankSum=-0.985;QD=14.22;ReadPosRankSum=-1.121;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:84:758,84,0
chrXV	1022757	.	T	C	985	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=4.643;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=0.595;QD=14.49;ReadPosRankSum=1.474;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1018,108,0
chrXV	1022865	.	C	G	982	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1015,114,0
chrXV	1023174	.	T	C	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.02;FS=3.053;HaplotypeScore=8.7470;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;MQRankSum=-0.506;QD=21.24;ReadPosRankSum=2.329;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1350,147,0
chrXV	1023427	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.399;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.346;QD=20.67;ReadPosRankSum=1.633;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1480,162,0
chrXV	1023697	.	T	C	1954	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=23.83;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1987,219,0
chrXV	1023785	.	C	G	1504	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.14;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1537,168,0
chrXV	1023874	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=22.28;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1726,180,0
chrXV	1024013	.	T	C	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;DP=74;Dels=0.00;FS=9.779;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;MQRankSum=-0.208;QD=20.03;ReadPosRankSum=2.904;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:3,70:74:99:1515,168,0
chrXV	1024047	.	G	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.54;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1390,150,0
chrXV	1024097	.	G	A	1491	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=22.25;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1524,156,0
chrXV	1024127	.	G	C	1360	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=19.43;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1393,153,0
chrXV	1024262	.	A	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=21.55;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1218,135,0
chrXV	1024298	.	C	T	1083	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.72;MQ0=0;QD=20.06;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1116,117,0
chrXV	1024308	.	G	A	1189	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=18.87;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1222,132,0
chrXV	1024334	.	A	G	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=38.10;MQ0=0;MQRankSum=-1.680;QD=15.85;ReadPosRankSum=1.627;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1079,103,0
chrXV	1024343	.	T	C	1116	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.27;MQ0=0;QD=16.17;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1149,129,0
chrXV	1024346	.	C	T	1215	SnpCluster	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=17.87;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1248,129,0
chrXV	1024352	.	T	C	1130	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.75;MQ0=0;QD=17.12;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1163,126,0
chrXV	1024421	.	T	G	1803	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=20.72;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1836,198,0
chrXV	1024543	.	A	G	1762	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.81;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1795,192,0
chrXV	1024766	.	A	G	1432	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=23.87;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1465,159,0
chrXV	1025192	.	G	T	1756	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.42;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1789,192,0
chrXV	1025234	.	A	G	1835	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.3667;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.39;SB=-1.054e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1868,213,0
chrXV	1025392	.	T	G	1219	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=20.32;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1252,141,0
chrXV	1025498	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-0.652;QD=18.86;ReadPosRankSum=2.344;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1372,150,0
chrXV	1025575	.	T	C	2384	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=13.7446;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=-1.508;QD=21.87;ReadPosRankSum=1.700;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:1,107:109:99:2417,261,0
chrXV	1025626	.	C	G	2383	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=3.5086;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=18.62;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,126:128:99:2416,261,0
chrXV	1025628	.	T	C	2370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.598;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;MQRankSum=0.738;QD=18.37;ReadPosRankSum=1.678;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2403,264,0
chrXV	1025760	.	G	A	1623	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8904;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.54;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1656,177,0
chrXV	1025986	.	G	A	2782	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=25.29;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,108:110:99:2815,294,0
chrXV	1026039	.	C	T	2051	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=22.05;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2084,219,0
chrXV	1026427	.	A	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.2992;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.12;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1360,150,0
chrXV	1026462	.	A	G	860	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.89;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:99:893,99,0
chrXV	1026675	.	C	A	4116.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.41;SB=-1.400e+03	GT:AD:DP:GQ:PL	1/1:0,161:162:99:4116,427,0
chrXV	1026836	.	T	C	1225	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.8682;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=19.76;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1258,138,0
chrXV	1026977	.	G	C	2514	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.61;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2547,273,0
chrXV	1027094	.	A	G	2515	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.96;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2548,282,0
chrXV	1027719	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.0427;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=22.57;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1613,168,0
chrXV	1029804	.	G	T	1751	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.67;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1784,192,0
chrXV	1032089	.	T	C	1805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=90;Dels=0.00;FS=5.416;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.215;QD=20.06;ReadPosRankSum=1.692;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:1,86:90:99:1838,198,0
chrXV	1032162	.	T	C	1821	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.97;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1854,201,0
chrXV	1032239	.	T	C	1682	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.79;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1715,183,0
chrXV	1032449	.	A	G	1719	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=77;Dels=0.00;FS=5.441;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.282;QD=22.32;ReadPosRankSum=1.687;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1752,189,0
chrXV	1032536	.	C	A	2398	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.20;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2431,258,0
chrXV	1032899	.	T	G	1920	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.20;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1953,216,0
chrXV	1032998	.	G	A	2110	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.19;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:2143,228,0
chrXV	1033105	.	A	C	1158	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.30;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1191,135,0
chrXV	1033361	.	A	T	1639	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8451;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=21.57;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1672,177,0
chrXV	1033439	.	T	G	944	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=17.48;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:977,111,0
chrXV	1033446	.	G	A	961	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=17.80;SB=-6.000e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:994,105,0
chrXV	1033501	.	C	G	1244	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=16.16;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,74:77:99:1277,141,0
chrXV	1033684	.	C	T	1829	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.86;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1862,201,0
chrXV	1034311	.	G	A	2696	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.28;SB=-1.231e+03	GT:AD:DP:GQ:PL	1/1:0,119:121:99:2729,288,0
chrXV	1034376	.	T	A	2178	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.56;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2211,228,0
chrXV	1034400	.	T	C	2244	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.97;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2277,252,0
chrXV	1034515	.	G	A	3111	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=25.29;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:3144,330,0
chrXV	1034596	.	G	T	2309	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=9.6910;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.78;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2342,258,0
chrXV	1034658	.	T	G	2045	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=25.25;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2078,228,0
chrXV	1034832	.	T	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.46;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1298,135,0
chrXV	1035092	.	G	T	1210	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.83;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1243,129,0
chrXV	1037514	.	A	C	407	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;MQRankSum=1.085;QD=18.50;ReadPosRankSum=2.227;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:2,20:22:48:440,48,0
chrXV	1038014	.	A	T	1659	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.07;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1692,186,0
chrXV	1038803	.	T	C	1313	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.20;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1346,147,0
chrXV	1038831	.	A	C	729	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.18;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:762,84,0
chrXV	1039474	.	T	C	2341	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=3.595;HaplotypeScore=5.6077;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.063;QD=19.51;ReadPosRankSum=1.703;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2374,258,0
chrXV	1039586	.	A	G	1123	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.41;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1156,126,0
chrXV	1039593	.	C	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.79;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1085,117,0
chrXV	1039786	.	A	G	1419	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.50;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1452,159,0
chrXV	1043118	.	T	C	1974	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=19.74;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2007,222,0
chrXV	1043840	.	A	T	1079	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.079;QD=20.36;ReadPosRankSum=0.752;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1112,123,0
chrXV	1044689	.	T	C	2484	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.00;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2517,273,0
chrXV	1044933	.	G	A	1000	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=20.41;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1033,108,0
chrXV	1045703	.	A	C	2032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.516;QD=25.40;ReadPosRankSum=1.689;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:1,79:80:99:2065,222,0
chrXV	1046405	.	G	A	999	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.79;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1032,105,0
chrXV	1046582	.	T	C	1769	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.84;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1802,201,0
chrXV	1046781	.	A	G	1162	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.69;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1195,135,0
chrXV	1047152	.	C	T	2044	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.6359;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.23;SB=-1.108e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2077,216,0
chrXV	1047265	.	T	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5555;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.64;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1233,138,0
chrXV	1047512	.	C	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.7845;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.21;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1810,195,0
chrXV	1049615	.	G	A	1414	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.38;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1447,150,0
chrXV	1052417	.	G	A	1443	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=17.81;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1476,165,0
chrXV	1053855	.	T	C	1418	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.88;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1451,159,0
chrXV	1054666	.	C	T	1156	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.2260;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.81;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1189,126,0
chrXV	1055035	.	G	A	1727	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.43;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1760,183,0
chrXV	1057321	.	C	T	1652	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=9.8717;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.15;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1685,180,0
chrXV	1057728	.	T	C	2726	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=9.7690;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.53;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2759,306,0
chrXV	1060135	.	C	T	2152	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=9.5511;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.39;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2185,243,0
chrXV	1061628	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.02;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1345,144,0
chrXV	1063895	.	C	T	2167	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.3708;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.11;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2200,237,0
chrXV	1065772	.	T	C	1522	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.06;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1555,168,0
chrXV	1070834	.	G	A	70.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.005;DP=64;Dels=0.00;FS=5.037;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=52.00;MQ0=1;MQRankSum=-5.342;QD=1.09;ReadPosRankSum=-0.164;SB=-8.007e+00	GT:AD:DP:GQ:PL	0/1:47,16:64:99:100,0,951
chrXV	1070850	.	C	A	231.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=51.16;MQ0=0;MQRankSum=-6.236;QD=3.25;ReadPosRankSum=0.267;SB=-1.200e+02	GT:AD:DP:GQ:PL	0/1:49,22:71:99:261,0,984
chrXV	1070955	.	C	G	306.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;DP=117;Dels=0.00;FS=0.723;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=48.04;MQ0=2;MQRankSum=-8.594;QD=2.62;ReadPosRankSum=3.642;SB=-1.050e+02	GT:AD:DP:GQ:PL	0/1:71,45:117:99:336,0,1292
chrXV	1070965	.	G	T	255.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.146;DP=120;Dels=0.00;FS=0.719;HaplotypeScore=5.6480;MLEAC=1;MLEAF=0.500;MQ=48.47;MQ0=2;MQRankSum=-8.687;QD=2.13;ReadPosRankSum=3.774;SB=-9.301e+01	GT:AD:DP:GQ:PL	0/1:76,44:120:99:285,0,1260
chrXV	1071487	.	C	T	1016.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.817;DP=103;Dels=0.00;FS=90.557;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=32.72;MQ0=18;MQRankSum=-4.372;QD=9.86;ReadPosRankSum=2.018;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:47,56:103:99:1046,0,490
chrXV	1071517	.	G	T	1136.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.903;DP=122;Dels=0.00;FS=116.161;HaplotypeScore=5.0573;MLEAC=1;MLEAF=0.500;MQ=36.46;MQ0=15;MQRankSum=-6.553;QD=9.31;ReadPosRankSum=1.222;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:61,60:122:99:1166,0,778
chrXV	1071534	.	C	T	870.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.699;DP=126;Dels=0.00;FS=87.800;HaplotypeScore=7.1706;MLEAC=1;MLEAF=0.500;MQ=36.52;MQ0=14;MQRankSum=-4.787;QD=6.90;ReadPosRankSum=0.983;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:74,52:126:99:900,0,976
chrXV	1071567	.	C	T	279.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.605;DP=126;Dels=0.00;FS=82.612;HaplotypeScore=7.2082;MLEAC=1;MLEAF=0.500;MQ=33.88;MQ0=12;MQRankSum=-5.812;QD=2.21;ReadPosRankSum=-0.663;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:87,39:126:99:309,0,1274
chrXV	1071583	.	G	A	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.924;DP=126;Dels=0.00;FS=58.629;HaplotypeScore=10.2416;MLEAC=1;MLEAF=0.500;MQ=32.34;MQ0=10;MQRankSum=-5.359;QD=0.10;ReadPosRankSum=-0.181;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:95,31:126:42:42,0,1399
chrXV	1071883	.	A	G	1077.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;DP=269;Dels=0.00;FS=16.463;HaplotypeScore=39.9937;MLEAC=1;MLEAF=0.500;MQ=21.10;MQ0=54;MQRankSum=-3.075;QD=4.00;ReadPosRankSum=0.734;SB=-4.340e+02	GT:AD:DP:GQ:PL	0/1:138,118:269:99:1107,0,1685
chrXV	1072045	.	A	G	405.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.064;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=1;MLEAF=0.500;MQ=15.01;MQ0=131;MQRankSum=0.694;QD=2.38;ReadPosRankSum=-1.147;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:120,50:170:99:435,0,313
chrXV	1072243	.	C	T	230.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.617;DP=239;Dels=0.00;FS=31.678;HaplotypeScore=8.3958;MLEAC=1;MLEAF=0.500;MQ=14.33;MQ0=123;MQRankSum=1.182;QD=0.96;ReadPosRankSum=-0.700;SB=-1.920e+02	GT:AD:DP:GQ:PL	0/1:143,94:239:99:260,0,560
chrXV	1072352	.	T	C	109.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;DP=215;Dels=0.00;FS=7.123;HaplotypeScore=21.2629;MLEAC=1;MLEAF=0.500;MQ=13.73;MQ0=113;MQRankSum=-0.737;QD=0.51;ReadPosRankSum=-1.855;SB=-5.301e+01	GT:AD:DP:GQ:PL	0/1:134,79:215:99:139,0,192
chrXV	1072492	.	A	G	2258.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.052;DP=196;Dels=0.00;FS=0.565;HaplotypeScore=8.0763;MLEAC=1;MLEAF=0.500;MQ=38.35;MQ0=2;MQRankSum=3.185;QD=11.52;ReadPosRankSum=-0.011;SB=-8.540e+02	GT:AD:DP:GQ:PL	0/1:72,124:196:99:2288,0,1141
chrXV	1072596	.	G	T	775	filter	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.85;MQ0=103;QD=5.31;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:55,90:146:87:808,87,0
chrXV	1072693	.	G	A	195.12	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=13.90;MQ0=55;MQRankSum=-0.810;QD=2.79;ReadPosRankSum=0.116;SB=-7.767e+01	GT:AD:DP:GQ:PL	1/1:34,35:70:5:226,5,0
chrXV	1072792	.	C	T	1097.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;DP=222;Dels=0.00;FS=4.012;HaplotypeScore=10.2963;MLEAC=1;MLEAF=0.500;MQ=23.04;MQ0=72;MQRankSum=3.201;QD=4.94;ReadPosRankSum=-1.641;SB=-3.880e+02	GT:AD:DP:GQ:PL	0/1:113,108:222:99:1127,0,697
chrXV	1072880	.	T	C	3160	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.015;DP=246;Dels=0.00;FS=10.012;HaplotypeScore=7.6972;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=31;MQRankSum=1.732;QD=12.85;ReadPosRankSum=1.470;SB=-1.694e+03	GT:AD:DP:GQ:PL	1/1:33,213:246:99:3193,142,0
chrXV	1072932	.	T	C	1673	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.2088;MLEAC=2;MLEAF=1.00;MQ=34.06;MQ0=23;MQRankSum=1.576;QD=12.58;ReadPosRankSum=2.381;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:2,127:133:99:1706,189,0
chrXV	1072945	.	T	C	1157	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;DP=112;Dels=0.00;FS=3.032;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=25;MQRankSum=0.282;QD=10.33;ReadPosRankSum=2.183;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:2,106:112:99:1190,138,0
chrXV	1072987	.	A	G	570	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=82;Dels=0.00;FS=13.576;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=27.47;MQ0=13;MQRankSum=-1.957;QD=6.95;ReadPosRankSum=2.898;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:3,79:82:69:603,69,0
chrXV	1072999	.	A	G	154.06	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=59;Dels=0.00;FS=9.823;HaplotypeScore=1.8907;MLEAC=2;MLEAF=1.00;MQ=22.52;MQ0=11;MQRankSum=-1.588;QD=2.61;ReadPosRankSum=1.155;SB=-7.497e-02	GT:AD:DP:GQ:PL	1/1:1,58:59:21:187,21,0
chrXV	1073004	.	C	T	82.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.56;MQ0=11;QD=1.47;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,56:56:12:115,12,0
chrXV	1073009	.	T	C	74.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.354;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=19.11;MQ0=9;MQRankSum=0.267;QD=1.22;ReadPosRankSum=2.354;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:2,58:61:12:107,12,0
chrXV	1073014	.	G	T	76.51	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=18.53;MQ0=5;QD=1.16;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,66:66:12:109,12,0
chrXV	1073024	.	A	G	74.51	filter	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=64.9913;MLEAC=2;MLEAF=1.00;MQ=17.17;MQ0=4;QD=0.88;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,85:85:12:107,12,0
chrXV	1073030	.	C	T	84.51	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=69.4617;MLEAC=2;MLEAF=1.00;MQ=17.42;MQ0=1;QD=1.02;SB=-5.226e-01	GT:AD:DP:GQ:PL	1/1:0,83:83:12:117,12,0
chrXV	1073052	.	C	T	486	filter	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.73;MQ0=23;QD=4.34;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,111:112:54:519,54,0
chrXV	1073108	.	C	A	2652.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;DP=253;Dels=0.00;FS=89.792;HaplotypeScore=8.8594;MLEAC=1;MLEAF=0.500;MQ=29.86;MQ0=50;MQRankSum=3.107;QD=10.48;ReadPosRankSum=-5.303;SB=-1.067e+03	GT:AD:DP:GQ:PL	0/1:72,181:253:99:2682,0,433
chrXV	1073202	.	T	C	1614	filter	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=4;QD=11.37;SB=-1.266e+03	GT:AD:DP:GQ:PL	1/1:0,140:142:99:1647,183,0
chrXV	1073204	.	G	A	1710	filter	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.65;MQ0=4;QD=12.30;SB=-1.359e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:1743,186,0
chrXV	1073325	.	A	G	1088	filter	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.4459;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=8;QD=9.38;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:1121,123,0
chrXV	1073687	.	C	A	1844	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=20.26;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1877,201,0
chrXV	1073695	.	T	G	1683	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;QD=19.57;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1716,189,0
chrXV	1073717	.	A	G	1550	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=4.988;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;MQRankSum=-1.141;QD=18.90;ReadPosRankSum=1.648;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1583,177,0
chrXV	1073834	.	T	C	1845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;MQRankSum=0.697;QD=21.21;ReadPosRankSum=1.692;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1878,201,0
chrXV	1073836	.	T	A	1779	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;DP=88;Dels=0.00;FS=2.979;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;MQRankSum=0.994;QD=20.22;ReadPosRankSum=2.282;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1812,198,0
chrXV	1073877	.	A	C	1256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=10.525;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-1.474;QD=16.75;ReadPosRankSum=2.879;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1289,141,0
chrXV	1073939	.	A	G	797	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=44;Dels=0.00;FS=2.717;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;MQRankSum=0.202;QD=18.11;ReadPosRankSum=2.336;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:2,41:44:90:830,90,0
chrXV	1073994	.	G	A	1304	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=20.37;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1337,141,0
chrXV	1074123	.	A	G	2565	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.677;DP=157;Dels=0.00;FS=9.022;HaplotypeScore=40.4199;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;MQRankSum=0.619;QD=16.34;ReadPosRankSum=3.840;SB=-1.487e+03	GT:AD:DP:GQ:PL	1/1:12,143:157:99:2598,297,0
chrXV	1074124	.	G	A	2680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.180;DP=158;Dels=0.03;FS=5.756;HaplotypeScore=41.2520;MLEAC=2;MLEAF=1.00;MQ=50.31;MQ0=0;MQRankSum=-1.607;QD=16.96;ReadPosRankSum=2.474;SB=-1.700e+03	GT:AD:DP:GQ:PL	1/1:3,150:153:99:2713,300,0
chrXV	1074187	.	C	T	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.1974;MLEAC=2;MLEAF=1.00;MQ=43.85;MQ0=0;MQRankSum=0.022;QD=16.32;ReadPosRankSum=0.680;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1355,147,0
chrXV	1074193	.	T	A	1451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.515;DP=93;Dels=0.00;FS=2.334;HaplotypeScore=13.0939;MLEAC=2;MLEAF=1.00;MQ=43.11;MQ0=0;MQRankSum=0.018;QD=15.60;ReadPosRankSum=3.695;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:5,87:93:99:1484,168,0
chrXV	1074236	.	C	T	2127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=39.97;MQ0=0;MQRankSum=2.110;QD=23.12;ReadPosRankSum=1.935;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:3,89:92:99:2160,228,0
chrXV	1074287	.	A	G	1215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=6.478;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=36.70;MQ0=0;MQRankSum=0.000;QD=15.00;ReadPosRankSum=1.559;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1248,138,0
chrXV	1074569	.	G	A	1083	filter	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=20.70;MQ0=80;QD=7.74;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,139:140:99:1116,117,0
chrXV	1074669	.	C	A,G	332.42	filter	AC=1,1;AF=0.500,0.500;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.16;MQ0=16;QD=4.10;SB=-1.594e+02	GT:AD:DP:GQ:PL	1/2:0,50,31:81:37:392,313,304,79,0,37
chrXV	1074671	.	T	C	412	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=81;Dels=0.00;FS=9.165;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=23.14;MQ0=15;MQRankSum=-1.680;QD=5.09;ReadPosRankSum=1.680;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:51:445,51,0
chrXV	1074721	.	A	G	189.01	filter	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.5558;MLEAC=2;MLEAF=1.00;MQ=18.95;MQ0=25;QD=1.87;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:27:222,27,0
chrXV	1074725	.	A	G	163.03	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9785;MLEAC=2;MLEAF=1.00;MQ=16.84;MQ0=28;MQRankSum=-0.483;QD=1.58;ReadPosRankSum=2.383;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:2,100:103:24:196,24,0
chrXV	1074746	.	C	T	117.13	filter	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.53;MQ0=37;QD=1.29;SB=-1.181e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:18:150,18,0
chrXV	1074764	.	C	T	30.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;DP=110;Dels=0.00;FS=1.202;HaplotypeScore=7.5252;MLEAC=1;MLEAF=0.500;MQ=20.45;MQ0=39;MQRankSum=-0.644;QD=0.27;ReadPosRankSum=-0.558;SB=-6.007e+00	GT:AD:DP:GQ:PL	0/1:88,21:110:60:60,0,513
chrXV	1074803	.	A	G	1483	filter	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=22.79;MQ0=40;QD=12.26;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:1516,171,0
chrXV	1074980	.	C	T	642.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DP=208;Dels=0.00;FS=16.285;HaplotypeScore=37.3025;MLEAC=1;MLEAF=0.500;MQ=18.58;MQ0=46;MQRankSum=-0.403;QD=3.09;ReadPosRankSum=-0.440;SB=-3.101e+01	GT:AD:DP:GQ:PL	0/1:77,89:208:99:672,0,632
chrXV	1074986	.	G	A	537.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.831;DP=197;Dels=0.00;FS=24.093;HaplotypeScore=30.8335;MLEAC=1;MLEAF=0.500;MQ=18.53;MQ0=43;MQRankSum=-1.874;QD=2.73;ReadPosRankSum=-1.866;SB=-1.901e+01	GT:AD:DP:GQ:PL	0/1:109,86:197:99:567,0,930
chrXV	1074989	.	C	T	559.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.808;DP=186;Dels=0.00;FS=27.311;HaplotypeScore=30.0448;MLEAC=1;MLEAF=0.500;MQ=18.75;MQ0=37;MQRankSum=-1.589;QD=3.01;ReadPosRankSum=-2.182;SB=-1.801e+01	GT:AD:DP:GQ:PL	0/1:100,86:186:99:589,0,793
chrXV	1074990	.	G	A	488.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=187;Dels=0.00;FS=20.134;HaplotypeScore=31.7913;MLEAC=1;MLEAF=0.500;MQ=18.77;MQ0=37;MQRankSum=-1.228;QD=2.61;ReadPosRankSum=-2.074;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:98,87:187:99:518,0,886
chrXV	1075245	.	A	G	186.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.824;DP=246;Dels=0.00;FS=165.479;HaplotypeScore=11.2085;MLEAC=1;MLEAF=0.500;MQ=39.11;MQ0=18;MQRankSum=-10.855;QD=0.76;ReadPosRankSum=-1.125;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:165,81:246:99:216,0,3004
chrXV	1075380	.	T	C	1511.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.052;DP=180;Dels=0.00;FS=20.309;HaplotypeScore=21.1302;MLEAC=1;MLEAF=0.500;MQ=35.30;MQ0=2;MQRankSum=1.311;QD=8.39;ReadPosRankSum=-0.935;SB=-4.770e+02	GT:AD:DP:GQ:PL	0/1:67,112:180:99:1541,0,964
chrXV	1075507	.	A	G	991.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;DP=100;Dels=0.00;FS=48.244;HaplotypeScore=8.1108;MLEAC=1;MLEAF=0.500;MQ=29.41;MQ0=20;MQRankSum=-2.797;QD=9.91;ReadPosRankSum=2.953;SB=-2.302e+01	GT:AD:DP:GQ:PL	0/1:18,81:100:98:1021,0,98
chrXV	1075521	.	A	G	1793	filter	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2761;MLEAC=2;MLEAF=1.00;MQ=31.72;MQ0=14;QD=16.01;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,108:112:99:1826,204,0
chrXV	1075546	.	C	T	153.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.814;DP=168;Dels=0.00;FS=24.757;HaplotypeScore=10.9868;MLEAC=1;MLEAF=0.500;MQ=37.36;MQ0=6;MQRankSum=-3.930;QD=0.91;ReadPosRankSum=-2.365;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:144,24:168:99:183,0,2190
chrXV	1075581	.	T	C	4059.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=243;Dels=0.00;FS=3.458;HaplotypeScore=8.8421;MLEAC=2;MLEAF=1.00;MQ=41.02;MQ0=5;MQRankSum=-0.228;QD=16.70;ReadPosRankSum=1.673;SB=-2.525e+03	GT:AD:DP:GQ:PL	1/1:1,239:243:99:4059,447,0
chrXV	1075593	.	C	G	4555.01	PASS	AC=2;AF=1.00;AN=2;DP=256;Dels=0.00;FS=0.000;HaplotypeScore=5.1764;MLEAC=2;MLEAF=1.00;MQ=41.79;MQ0=3;QD=17.79;SB=-2.780e+03	GT:AD:DP:GQ:PL	1/1:0,254:256:99:4555,495,0
chrXV	1075610	.	T	C	1436.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.142;DP=269;Dels=0.00;FS=3.429;HaplotypeScore=20.4719;MLEAC=1;MLEAF=0.500;MQ=42.99;MQ0=0;MQRankSum=-8.516;QD=5.34;ReadPosRankSum=1.354;SB=-7.310e+02	GT:AD:DP:GQ:PL	0/1:142,126:269:99:1466,0,2427
chrXV	1075718	.	G	T	993	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=8;QD=16.83;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1026,114,0
chrXV	1075738	.	C	T	140.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=19;Dels=0.00;FS=3.424;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.44;MQ0=8;MQRankSum=0.158;QD=7.38;ReadPosRankSum=0.791;SB=-5.863e+01	GT:AD:DP:GQ:PL	1/1:1,18:19:18:173,18,0
chrXV	1075840	.	C	T	465.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;DP=118;Dels=0.00;FS=32.308;HaplotypeScore=3.8887;MLEAC=1;MLEAF=0.500;MQ=17.19;MQ0=47;MQRankSum=2.071;QD=3.94;ReadPosRankSum=-2.893;SB=-3.160e+02	GT:AD:DP:GQ:PL	0/1:49,68:118:99:495,0,125
chrXV	1075901	.	A	G	1025	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=3;MQRankSum=0.944;QD=17.98;ReadPosRankSum=2.794;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:3,54:57:99:1058,114,0
chrXV	1076104	.	G	A	1570	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.507;DP=83;Dels=0.00;FS=6.560;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=38.89;MQ0=6;MQRankSum=1.417;QD=18.92;ReadPosRankSum=0.247;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:3,80:83:99:1603,165,0
chrXV	1076111	.	T	A	1278	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.878;DP=75;Dels=0.00;FS=4.831;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.73;MQ0=2;MQRankSum=1.353;QD=17.04;ReadPosRankSum=0.783;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1311,135,0
chrXV	1076112	.	G	A	1257	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=75;Dels=0.00;FS=4.654;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=2;MQRankSum=1.210;QD=16.76;ReadPosRankSum=0.831;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1290,138,0
chrXV	1076141	.	T	G	1371	filter	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=31.97;MQ0=6;QD=14.43;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1404,153,0
chrXV	1076146	.	T	C	1167	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.1541;MLEAC=2;MLEAF=1.00;MQ=30.48;MQ0=9;MQRankSum=-1.654;QD=11.91;ReadPosRankSum=1.693;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1200,132,0
chrXV	1076426	.	G	T	756	filter	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.71;MQ0=15;QD=10.96;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:84:789,84,0
chrXV	1076454	.	A	G	1403	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=35.63;MQ0=13;MQRankSum=-0.783;QD=15.94;ReadPosRankSum=1.685;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:1,85:88:99:1436,162,0
chrXV	1076576	.	G	A	977	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6768;MLEAC=2;MLEAF=1.00;MQ=31.19;MQ0=20;MQRankSum=1.291;QD=13.03;ReadPosRankSum=-1.354;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:6,69:75:99:1010,111,0
chrXV	1076602	.	A	C	32.22	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.363;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.81;MQ0=18;MQRankSum=-2.258;QD=0.95;ReadPosRankSum=3.308;SB=-1.746e+01	GT:AD:DP:GQ:PL	0/1:8,26:34:10:62,0,10
chrXV	1076879	.	A	T	143.13	filter	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.08;MQ0=136;QD=0.98;SB=-1.334e-01	GT:AD:DP:GQ:PL	1/1:74,72:146:18:176,18,0
chrXV	1077350	.	A	G	1195.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.425;DP=246;Dels=0.00;FS=9.883;HaplotypeScore=13.6993;MLEAC=1;MLEAF=0.500;MQ=26.17;MQ0=87;MQRankSum=0.357;QD=4.86;ReadPosRankSum=-1.122;SB=-4.030e+02	GT:AD:DP:GQ:PL	0/1:143,102:246:99:1225,0,1724
chrXV	1077431	.	T	C	1905	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=233;Dels=0.00;FS=0.000;HaplotypeScore=4.1162;MLEAC=2;MLEAF=1.00;MQ=17.12;MQ0=110;MQRankSum=-2.430;QD=8.18;ReadPosRankSum=2.390;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:2,231:233:99:1938,216,0
chrXV	1077896	.	C	T	632.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.594;DP=243;Dels=0.00;FS=8.952;HaplotypeScore=10.8038;MLEAC=1;MLEAF=0.500;MQ=35.54;MQ0=29;MQRankSum=-7.261;QD=2.60;ReadPosRankSum=3.008;SB=-2.630e+02	GT:AD:DP:GQ:PL	0/1:132,110:243:99:662,0,1960
chrXV	1078060	.	T	A	681.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=202;Dels=0.00;FS=0.000;HaplotypeScore=6.6921;MLEAC=1;MLEAF=0.500;MQ=33.04;MQ0=25;MQRankSum=-1.219;QD=3.37;ReadPosRankSum=-0.570;SB=-2.201e+01	GT:AD:DP:GQ:PL	0/1:129,73:202:99:711,0,2096
chrXV	1078080	.	A	G	560.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.419;DP=217;Dels=0.00;FS=4.637;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=31.27;MQ0=32;MQRankSum=-2.420;QD=2.58;ReadPosRankSum=0.051;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:141,76:217:99:590,0,2143
chrXV	1078198	.	T	A	709	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=5.560;DP=110;Dels=0.00;FS=41.890;HaplotypeScore=11.7213;MLEAC=2;MLEAF=1.00;MQ=32.78;MQ0=15;MQRankSum=7.047;QD=6.45;ReadPosRankSum=0.519;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:50,60:110:41:742,41,0
chrXV	1078278	.	G	A	145.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.518;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.12;MQ0=18;MQRankSum=3.360;QD=2.34;ReadPosRankSum=2.174;SB=-1.701e+01	GT:AD:DP:GQ:PL	0/1:41,21:62:99:175,0,193
chrXV	1078315	.	T	A	15.25	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=8.2986;MLEAC=1;MLEAF=0.500;MQ=28.71;MQ0=8;MQRankSum=1.557;QD=0.44;ReadPosRankSum=0.085;SB=-3.011e+01	GT:AD:DP:GQ:PL	0/1:23,12:35:13:45,0,13
chrXV	1078360	.	A	G	46.97	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.46;MQ0=7;QD=3.36;SB=-5.121e+01	GT:AD:DP:GQ:PL	1/1:0,13:14:9:79,9,0
chrXV	1078788	.	G	A	72.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=1;MLEAF=0.500;MQ=20.10;MQ0=71;MQRankSum=-1.971;QD=0.50;ReadPosRankSum=0.330;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:96,42:145:99:102,0,958
chrXV	1079154	.	G	A	57.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.618;DP=191;Dels=0.00;FS=76.492;HaplotypeScore=59.3688;MLEAC=1;MLEAF=0.500;MQ=44.37;MQ0=0;MQRankSum=-6.383;QD=0.30;ReadPosRankSum=-4.262;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:170,21:191:87:87,0,2743
chrXV	1079162	.	G	T	240.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.953;DP=202;Dels=0.00;FS=71.089;HaplotypeScore=58.5435;MLEAC=1;MLEAF=0.500;MQ=43.64;MQ0=0;MQRankSum=-5.634;QD=1.19;ReadPosRankSum=-2.905;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:171,27:202:99:270,0,2790
chrXV	1079184	.	G	A	339.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DP=213;Dels=0.00;FS=109.513;HaplotypeScore=14.3319;MLEAC=1;MLEAF=0.500;MQ=39.55;MQ0=0;MQRankSum=-6.317;QD=1.59;ReadPosRankSum=0.902;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:173,39:213:99:369,0,2868
chrXV	1079193	.	C	G	487.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.853;DP=218;Dels=0.00;FS=100.443;HaplotypeScore=3.3563;MLEAC=1;MLEAF=0.500;MQ=38.57;MQ0=0;MQRankSum=-6.922;QD=2.23;ReadPosRankSum=2.073;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:171,46:218:99:517,0,2774
chrXV	1079220	.	G	A	1083.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.486;DP=221;Dels=0.00;FS=2.664;HaplotypeScore=5.6653;MLEAC=1;MLEAF=0.500;MQ=34.09;MQ0=14;MQRankSum=4.415;QD=4.90;ReadPosRankSum=-0.407;SB=-5.510e+02	GT:AD:DP:GQ:PL	0/1:143,76:221:99:1113,0,2052
chrXV	1079604	.	C	A	33.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;DP=94;Dels=0.00;FS=1.670;HaplotypeScore=4.7755;MLEAC=1;MLEAF=0.500;MQ=18.08;MQ0=62;MQRankSum=1.230;QD=0.35;ReadPosRankSum=-0.952;SB=-3.301e+01	GT:AD:DP:GQ:PL	0/1:69,25:94:63:63,0,252
chrXV	1079730	.	G	A	302.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.292;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=1;MLEAF=0.500;MQ=23.37;MQ0=44;MQRankSum=-1.134;QD=2.13;ReadPosRankSum=1.075;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:89,53:142:99:332,0,775
chrXV	1079816	.	G	T	1060.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.549;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=16.5623;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=31;MQRankSum=-2.242;QD=7.57;ReadPosRankSum=0.303;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:42,96:140:99:1090,0,480
chrXV	1079904	.	T	C	326.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=16.7873;MLEAC=1;MLEAF=0.500;MQ=25.42;MQ0=55;MQRankSum=0.216;QD=2.26;ReadPosRankSum=0.985;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:96,46:144:99:356,0,632
chrXV	1083158	.	G	A	35.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.752;DP=196;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=5.00;MQ0=180;MQRankSum=-0.212;QD=0.18;ReadPosRankSum=0.635;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:53,143:196:37:65,0,37
chrXV	1083260	.	A	G	415.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.338;DP=464;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=1;MLEAF=0.500;MQ=8.06;MQ0=385;MQRankSum=-0.447;QD=0.89;ReadPosRankSum=0.592;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:121,340:464:99:445,0,455
chrXV	1083302	.	T	C	132.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229;DP=313;Dels=0.00;FS=0.000;HaplotypeScore=1.9053;MLEAC=1;MLEAF=0.500;MQ=8.57;MQ0=250;MQRankSum=-0.008;QD=0.42;ReadPosRankSum=-2.733;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:217,92:313:99:162,0,532
chrXV	1083436	.	G	A	63.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=66;Dels=0.00;FS=5.229;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=8.89;MQ0=55;MQRankSum=0.296;QD=0.95;ReadPosRankSum=-1.580;SB=-5.228e-03	GT:AD:DP:GQ:PL	0/1:26,39:66:37:93,0,37
chrXV	1083439	.	A	T	84.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=11.25;MQ0=54;MQRankSum=-0.396;QD=1.14;ReadPosRankSum=-0.079;SB=-6.522e-03	GT:AD:DP:GQ:PL	0/1:29,45:74:59:114,0,59
chrXV	1083981	.	A	G	28.08	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=11.4258;MLEAC=1;MLEAF=0.500;MQ=8.08;MQ0=134;MQRankSum=-2.046;QD=0.15;ReadPosRankSum=2.249;SB=-2.704e+01	GT:AD:DP:GQ:PL	0/1:132,51:183:15:58,0,15
chrXV	1083993	.	T	C	38.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=185;Dels=0.00;FS=0.000;HaplotypeScore=3.5365;MLEAC=2;MLEAF=1.00;MQ=7.64;MQ0=140;MQRankSum=-0.500;QD=0.21;ReadPosRankSum=1.501;SB=-2.721e+01	GT:AD:DP:GQ:PL	1/1:141,44:185:9:71,9,0
chrXV	1083994	.	G	T	38.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.501;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=3.5365;MLEAC=2;MLEAF=1.00;MQ=7.66;MQ0=139;MQRankSum=1.578;QD=0.21;ReadPosRankSum=1.347;SB=-2.721e+01	GT:AD:DP:GQ:PL	1/1:140,44:184:9:71,9,0
chrXV	1083997	.	T	A	34.97	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=187;Dels=0.00;FS=0.000;HaplotypeScore=3.5365;MLEAC=2;MLEAF=1.00;MQ=7.67;MQ0=141;QD=0.19;SB=-2.321e+01	GT:AD:DP:GQ:PL	1/1:141,46:187:9:67,9,0
chrXV	1091240	.	T	A	49.97	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.73;MQ0=6;QD=5.00;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:0,10:10:9:82,9,0
chrXV	1091241	.	A	G	46.97	filter	AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.81;MQ0=7;QD=4.27;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,10:11:9:79,9,0
chrXV	1091267	.	G	A	51.97	filter	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.30;MQ0=9;QD=4.00;SB=-2.501e+01	GT:AD:DP:GQ:PL	1/1:2,11:13:9:84,9,0
chrXVI	6536	.	T	C	22.79	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=10.10;MQ0=31;MQRankSum=-1.271;QD=0.56;ReadPosRankSum=1.271;SB=1.24	GT:AD:DP:GQ:PL	1/1:11,29:41:6:54,6,0
chrXVI	6821	.	G	A	321	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=10;QD=10.70;SB=-1.480e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:39:354,39,0
chrXVI	6822	.	T	C	248.79	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.847;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=21.76;MQ0=11;MQRankSum=-0.326;QD=7.77;ReadPosRankSum=3.730;SB=-8.267e+01	GT:AD:DP:GQ:PL	1/1:18,14:32:10:281,10,0
chrXVI	6824	.	T	C	328	SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.830;DP=40;Dels=0.00;FS=8.475;HaplotypeScore=19.9043;MLEAC=2;MLEAF=1.00;MQ=22.88;MQ0=11;MQRankSum=0.708;QD=8.20;ReadPosRankSum=4.074;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:9,31:40:42:361,42,0
chrXVI	6848	.	T	C	193.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;DP=110;Dels=0.00;FS=3.131;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=20.73;MQ0=28;MQRankSum=1.955;QD=1.75;ReadPosRankSum=1.650;SB=-6.101e+01	GT:AD:DP:GQ:PL	0/1:97,13:110:99:223,0,570
chrXVI	6879	.	T	C	655	filter	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=56.1533;MLEAC=2;MLEAF=1.00;MQ=18.17;MQ0=49;QD=5.70;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:78:688,78,0
chrXVI	6888	.	G	C	18.07	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;DP=128;Dels=0.00;FS=2.374;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.03;MQ0=63;MQRankSum=1.484;QD=0.14;ReadPosRankSum=-3.683;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:117,11:128:48:48,0,487
chrXVI	6905	.	T	C	489.06	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=8.5794;MLEAC=1;MLEAF=0.500;MQ=16.07;MQ0=75;MQRankSum=-1.762;QD=3.54;ReadPosRankSum=2.889;SB=-1.836e+02	GT:AD:DP:GQ:PL	0/1:11,127:138:16:519,0,16
chrXVI	6910	.	C	A	160.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;DP=140;Dels=0.00;FS=10.003;HaplotypeScore=8.5794;MLEAC=1;MLEAF=0.500;MQ=15.94;MQ0=78;MQRankSum=1.470;QD=1.14;ReadPosRankSum=-0.104;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:71,69:140:99:190,0,303
chrXVI	7087	.	A	G	44.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.380;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=6.29;MQ0=83;MQRankSum=1.380;QD=0.51;ReadPosRankSum=0.720;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:85,4:89:9:77,9,0
chrXVI	7103	.	A	T	83.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=11.0656;MLEAC=1;MLEAF=0.500;MQ=9.23;MQ0=83;MQRankSum=1.331;QD=0.85;ReadPosRankSum=-0.058;SB=-7.380e-03	GT:AD:DP:GQ:PL	0/1:91,7:98:34:113,0,34
chrXVI	7108	.	G	A	86.18	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=96;Dels=0.03;FS=0.000;HaplotypeScore=14.7204;MLEAC=1;MLEAF=0.500;MQ=10.06;MQ0=79;MQRankSum=1.733;QD=0.90;ReadPosRankSum=-0.133;SB=0.462	GT:AD:DP:GQ:PL	0/1:83,10:93:11:116,0,11
chrXVI	7110	.	A	C	88.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=22.4833;MLEAC=1;MLEAF=0.500;MQ=10.23;MQ0=83;MQRankSum=1.359;QD=0.87;ReadPosRankSum=0.362;SB=-6.863e-03	GT:AD:DP:GQ:PL	0/1:93,7:101:38:118,0,38
chrXVI	7140	.	G	T	54.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.166;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=20.9753;MLEAC=1;MLEAF=0.500;MQ=10.74;MQ0=126;MQRankSum=1.102;QD=0.35;ReadPosRankSum=2.321;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:148,8:156:84:84,0,178
chrXVI	7142	.	T	C	62.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=13.5064;MLEAC=1;MLEAF=0.500;MQ=10.98;MQ0=129;MQRankSum=0.952;QD=0.39;ReadPosRankSum=0.302;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:131,26:160:92:92,0,132
chrXVI	7143	.	A	G	44.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=17.1839;MLEAC=1;MLEAF=0.500;MQ=10.91;MQ0=131;MQRankSum=1.287;QD=0.27;ReadPosRankSum=1.964;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:153,8:162:74:74,0,215
chrXVI	7148	.	A	T	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DP=164;Dels=0.00;FS=0.000;HaplotypeScore=12.0124;MLEAC=1;MLEAF=0.500;MQ=10.11;MQ0=136;MQRankSum=0.992;QD=0.14;ReadPosRankSum=0.687;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:156,8:164:53:53,0,163
chrXVI	7151	.	C	A	26.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.347;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0124;MLEAC=1;MLEAF=0.500;MQ=9.91;MQ0=135;MQRankSum=1.300;QD=0.16;ReadPosRankSum=0.304;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:155,7:162:56:56,0,164
chrXVI	7152	.	A	G	25.02	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=12.0124;MLEAC=1;MLEAF=0.500;MQ=10.17;MQ0=134;MQRankSum=1.167;QD=0.15;ReadPosRankSum=0.106;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:155,7:162:55:55,0,168
chrXVI	7164	.	T	C	72.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;DP=160;Dels=0.00;FS=0.000;HaplotypeScore=7.7045;MLEAC=1;MLEAF=0.500;MQ=10.31;MQ0=132;MQRankSum=0.025;QD=0.45;ReadPosRankSum=-2.196;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:132,27:160:99:102,0,155
chrXVI	7166	.	A	T	19.06	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;DP=183;Dels=0.00;FS=0.000;HaplotypeScore=21.3737;MLEAC=1;MLEAF=0.500;MQ=12.58;MQ0=130;MQRankSum=1.589;QD=0.10;ReadPosRankSum=0.959;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:176,7:183:49:49,0,209
chrXVI	7228	.	A	G	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=8.85;MQ0=46;MQRankSum=0.550;QD=0.27;ReadPosRankSum=0.550;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:48,5:53:39:44,0,39
chrXVI	12228	.	T	C	112.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.362;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=12.55;MQ0=89;MQRankSum=4.123;QD=0.88;ReadPosRankSum=-0.898;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:84,44:128:99:142,0,337
chrXVI	12357	.	C	T	98.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.035;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=10.98;MQ0=135;MQRankSum=-0.112;QD=0.53;ReadPosRankSum=1.797;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:110,75:186:99:128,0,306
chrXVI	12381	.	C	T	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=10.38;MQ0=132;MQRankSum=-0.202;QD=0.13;ReadPosRankSum=-0.465;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:111,72:184:53:53,0,343
chrXVI	12429	.	C	T	39.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=8.57;MQ0=120;MQRankSum=1.319;QD=0.25;ReadPosRankSum=0.400;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:128,27:157:69:69,0,185
chrXVI	12625	.	A	T	498.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;DP=133;Dels=0.00;FS=15.786;HaplotypeScore=62.0246;MLEAC=1;MLEAF=0.500;MQ=24.46;MQ0=20;MQRankSum=3.096;QD=3.74;ReadPosRankSum=0.288;SB=-3.640e+02	GT:AD:DP:GQ:PL	0/1:76,57:133:99:528,0,1220
chrXVI	12633	.	C	G	470.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;DP=143;Dels=0.00;FS=12.369;HaplotypeScore=53.8000;MLEAC=1;MLEAF=0.500;MQ=26.32;MQ0=14;MQRankSum=3.086;QD=3.29;ReadPosRankSum=1.365;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:82,39:143:99:500,0,1295
chrXVI	12641	.	G	T	699.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.913;DP=151;Dels=0.00;FS=20.266;HaplotypeScore=46.1947;MLEAC=1;MLEAF=0.500;MQ=26.67;MQ0=11;MQRankSum=3.387;QD=4.63;ReadPosRankSum=1.832;SB=-4.680e+02	GT:AD:DP:GQ:PL	0/1:84,65:151:99:729,0,1435
chrXVI	12717	.	T	C	14.18	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;DP=169;Dels=0.00;FS=137.128;HaplotypeScore=8.6755;MLEAC=1;MLEAF=0.500;MQ=18.74;MQ0=94;MQRankSum=1.620;QD=0.08;ReadPosRankSum=4.513;SB=-3.013e+00	GT:AD:DP:GQ:PL	0/1:135,34:169:44:44,0,766
chrXVI	12788	.	A	G	128.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;DP=142;Dels=0.00;FS=28.353;HaplotypeScore=12.7058;MLEAC=1;MLEAF=0.500;MQ=14.76;MQ0=80;MQRankSum=3.317;QD=0.90;ReadPosRankSum=-0.803;SB=-1.270e+02	GT:AD:DP:GQ:PL	0/1:109,33:142:99:158,0,604
chrXVI	12866	.	C	T	12.27	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DP=28;Dels=0.00;FS=2.363;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=14;MQRankSum=0.667;QD=0.44;ReadPosRankSum=-0.133;SB=-2.601e+01	GT:AD:DP:GQ:PL	0/1:18,10:28:42:42,0,181
chrXVI	13130	.	C	G	81.51	filter	AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.29;MQ0=6;QD=5.82;SB=-3.871e-01	GT:AD:DP:GQ:PL	1/1:0,13:14:12:114,12,0
chrXVI	13304	.	C	G	181.03	filter	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.32;MQ0=39;QD=3.69;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,45:49:24:214,24,0
chrXVI	14437	.	A	G	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.999;DP=481;Dels=0.00;FS=18.748;HaplotypeScore=43.4120;MLEAC=1;MLEAF=0.500;MQ=40.19;MQ0=4;MQRankSum=1.855;QD=0.06;ReadPosRankSum=0.125;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:425,53:481:57:57,0,7343
chrXVI	14446	.	C	T	38.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;DP=476;Dels=0.00;FS=10.844;HaplotypeScore=51.7878;MLEAC=1;MLEAF=0.500;MQ=41.01;MQ0=4;MQRankSum=0.781;QD=0.08;ReadPosRankSum=-0.519;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:411,57:476:68:68,0,8149
chrXVI	14563	.	C	T	1705.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=5.199;DP=486;Dels=0.00;FS=1.461;HaplotypeScore=16.3857;MLEAC=1;MLEAF=0.500;MQ=34.85;MQ0=20;MQRankSum=-3.962;QD=3.51;ReadPosRankSum=0.817;SB=-4.300e+02	GT:AD:DP:GQ:PL	0/1:346,139:486:99:1735,0,6820
chrXVI	14667	.	G	T	1027.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=15.8087;MLEAC=1;MLEAF=0.500;MQ=50.19;MQ0=7;MQRankSum=1.093;QD=4.80;ReadPosRankSum=-0.121;SB=-4.630e+02	GT:AD:DP:GQ:PL	0/1:136,77:214:99:1057,0,2472
chrXVI	14741	.	G	A	162.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;DP=324;Dels=0.00;FS=72.197;HaplotypeScore=12.7678;MLEAC=1;MLEAF=0.500;MQ=47.11;MQ0=13;MQRankSum=-9.222;QD=0.50;ReadPosRankSum=-1.693;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:251,73:324:99:192,0,4525
chrXVI	14802	.	A	G	718.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.121;DP=465;Dels=0.00;FS=8.491;HaplotypeScore=25.9091;MLEAC=1;MLEAF=0.500;MQ=34.79;MQ0=57;MQRankSum=1.289;QD=1.54;ReadPosRankSum=-1.417;SB=-2.030e+02	GT:AD:DP:GQ:PL	0/1:363,101:465:99:748,0,4022
chrXVI	14876	.	A	G	861.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;DP=640;Dels=0.00;FS=4.493;HaplotypeScore=28.3226;MLEAC=1;MLEAF=0.500;MQ=24.26;MQ0=135;MQRankSum=1.072;QD=1.35;ReadPosRankSum=1.961;SB=-1.720e+02	GT:AD:DP:GQ:PL	0/1:496,140:640:99:891,0,4087
chrXVI	15039	.	G	T	5939.01	filter	AC=2;AF=1.00;AN=2;DP=300;Dels=0.00;FS=0.000;HaplotypeScore=11.9131;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=11;QD=19.80;SB=-2.734e+03	GT:AD:DP:GQ:PL	1/1:0,299:300:99:5939,637,0
chrXVI	15300	.	G	A	458.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.810;DP=227;Dels=0.00;FS=10.442;HaplotypeScore=22.6989;MLEAC=1;MLEAF=0.500;MQ=28.46;MQ0=38;MQRankSum=-1.511;QD=2.02;ReadPosRankSum=-0.136;SB=-1.060e+02	GT:AD:DP:GQ:PL	0/1:156,70:227:99:488,0,1679
chrXVI	15532	.	G	A	213.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.975;DP=187;Dels=0.00;FS=5.630;HaplotypeScore=15.9419;MLEAC=1;MLEAF=0.500;MQ=47.68;MQ0=7;MQRankSum=-0.227;QD=1.14;ReadPosRankSum=0.492;SB=-1.180e+02	GT:AD:DP:GQ:PL	0/1:148,39:187:99:243,0,2537
chrXVI	15571	.	T	C	119.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;DP=263;Dels=0.00;FS=170.661;HaplotypeScore=4.9350;MLEAC=1;MLEAF=0.500;MQ=48.00;MQ0=18;MQRankSum=-5.818;QD=0.45;ReadPosRankSum=-0.037;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:202,61:263:99:149,0,4071
chrXVI	15669	.	C	A	620.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=6.502;DP=204;Dels=0.00;FS=34.968;HaplotypeScore=5.3104;MLEAC=1;MLEAF=0.500;MQ=41.30;MQ0=5;MQRankSum=-7.015;QD=3.04;ReadPosRankSum=-0.860;SB=-1.780e+02	GT:AD:DP:GQ:PL	0/1:129,74:204:99:650,0,1930
chrXVI	15698	.	A	G	364.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.112;DP=211;Dels=0.00;FS=68.651;HaplotypeScore=13.1057;MLEAC=1;MLEAF=0.500;MQ=36.49;MQ0=11;MQRankSum=-3.256;QD=1.73;ReadPosRankSum=0.658;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:152,59:211:99:394,0,1944
chrXVI	15762	.	C	A	1700	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=146;Dels=0.00;FS=13.945;HaplotypeScore=10.1093;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=22;MQRankSum=1.453;QD=11.64;ReadPosRankSum=-0.112;SB=-1.160e+02	GT:AD:DP:GQ:PL	1/1:1,145:146:99:1733,186,0
chrXVI	16088	.	C	T	145.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.985;DP=94;Dels=0.00;FS=31.272;HaplotypeScore=19.0402;MLEAC=1;MLEAF=0.500;MQ=23.56;MQ0=22;MQRankSum=1.606;QD=1.54;ReadPosRankSum=1.791;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:67,25:94:99:175,0,778
chrXVI	16089	.	G	A	138.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;DP=94;Dels=0.00;FS=16.459;HaplotypeScore=21.5754;MLEAC=1;MLEAF=0.500;MQ=23.56;MQ0=22;MQRankSum=0.681;QD=1.47;ReadPosRankSum=0.458;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:69,25:94:99:168,0,701
chrXVI	16092	.	C	T	141.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;DP=97;Dels=0.00;FS=31.281;HaplotypeScore=19.9083;MLEAC=1;MLEAF=0.500;MQ=23.75;MQ0=24;MQRankSum=1.305;QD=1.45;ReadPosRankSum=1.461;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:72,23:97:99:171,0,783
chrXVI	16098	.	G	A	200.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;DP=101;Dels=0.00;FS=29.228;HaplotypeScore=19.0214;MLEAC=1;MLEAF=0.500;MQ=23.39;MQ0=30;MQRankSum=0.430;QD=1.98;ReadPosRankSum=2.052;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:61,23:101:99:230,0,534
chrXVI	16169	.	G	A	268.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;DP=180;Dels=0.00;FS=10.347;HaplotypeScore=11.2429;MLEAC=1;MLEAF=0.500;MQ=22.65;MQ0=65;MQRankSum=1.812;QD=1.49;ReadPosRankSum=0.262;SB=-5.401e+01	GT:AD:DP:GQ:PL	0/1:130,50:180:99:298,0,972
chrXVI	16314	.	G	A	1610.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.010;DP=220;Dels=0.00;FS=7.394;HaplotypeScore=10.4423;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=30;MQRankSum=-2.604;QD=7.32;ReadPosRankSum=-0.511;SB=-9.290e+02	GT:AD:DP:GQ:PL	0/1:106,114:220:99:1640,0,1325
chrXVI	16412	.	T	C	663.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.478;DP=146;Dels=0.00;FS=1.522;HaplotypeScore=36.6747;MLEAC=1;MLEAF=0.500;MQ=44.82;MQ0=14;MQRankSum=0.200;QD=4.54;ReadPosRankSum=-0.484;SB=-2.920e+02	GT:AD:DP:GQ:PL	0/1:80,66:146:99:693,0,1084
chrXVI	16416	.	G	A	168.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;DP=149;Dels=0.00;FS=31.832;HaplotypeScore=45.2955;MLEAC=1;MLEAF=0.500;MQ=44.45;MQ0=15;MQRankSum=-3.166;QD=1.13;ReadPosRankSum=-0.110;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:108,39:149:99:198,0,1488
chrXVI	16500	.	A	G	2760	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=174;Dels=0.00;FS=6.880;HaplotypeScore=3.4666;MLEAC=2;MLEAF=1.00;MQ=25.73;MQ0=55;MQRankSum=-1.703;QD=15.86;ReadPosRankSum=1.288;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:2,171:174:99:2793,318,0
chrXVI	16662	.	A	G	1090.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;DP=162;Dels=0.00;FS=1.331;HaplotypeScore=10.1423;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=18;MQRankSum=-10.072;QD=6.73;ReadPosRankSum=3.059;SB=-6.510e+02	GT:AD:DP:GQ:PL	0/1:61,100:162:99:1120,0,859
chrXVI	16689	.	G	A	594.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.973;DP=111;Dels=0.00;FS=8.830;HaplotypeScore=5.0595;MLEAC=1;MLEAF=0.500;MQ=43.00;MQ0=16;MQRankSum=-8.310;QD=5.35;ReadPosRankSum=-2.263;SB=-2.220e+02	GT:AD:DP:GQ:PL	0/1:50,61:111:99:624,0,838
chrXVI	16815	.	T	C	43.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;DP=98;Dels=0.00;FS=2.159;HaplotypeScore=3.9941;MLEAC=1;MLEAF=0.500;MQ=48.01;MQ0=0;MQRankSum=-4.095;QD=0.44;ReadPosRankSum=-0.173;SB=-3.901e+01	GT:AD:DP:GQ:PL	0/1:77,21:98:73:73,0,1354
chrXVI	16824	.	T	C	159.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;DP=105;Dels=0.00;FS=0.903;HaplotypeScore=4.2335;MLEAC=1;MLEAF=0.500;MQ=47.65;MQ0=0;MQRankSum=-3.754;QD=1.51;ReadPosRankSum=-0.300;SB=-9.401e+01	GT:AD:DP:GQ:PL	0/1:78,26:105:99:189,0,1322
chrXVI	16931	.	A	G	194.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;DP=216;Dels=0.01;FS=0.745;HaplotypeScore=203.6868;MLEAC=1;MLEAF=0.500;MQ=50.98;MQ0=0;MQRankSum=0.915;QD=0.90;ReadPosRankSum=0.504;SB=-1.300e+02	GT:AD:DP:GQ:PL	0/1:132,33:214:99:224,0,1993
chrXVI	16980	.	T	A	2148.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.670;DP=241;Dels=0.00;FS=15.228;HaplotypeScore=45.3390;MLEAC=1;MLEAF=0.500;MQ=52.23;MQ0=0;MQRankSum=-1.991;QD=8.91;ReadPosRankSum=0.926;SB=-3.850e+02	GT:AD:DP:GQ:PL	0/1:95,145:241:99:2178,0,1086
chrXVI	17237	.	A	G	1437.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.749;DP=391;Dels=0.00;FS=7.452;HaplotypeScore=8.2747;MLEAC=1;MLEAF=0.500;MQ=55.22;MQ0=0;MQRankSum=3.105;QD=3.68;ReadPosRankSum=-1.855;SB=-6.150e+02	GT:AD:DP:GQ:PL	0/1:276,114:391:99:1467,0,5793
chrXVI	17345	.	G	A	3365.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;DP=273;Dels=0.00;FS=2.245;HaplotypeScore=25.5867;MLEAC=1;MLEAF=0.500;MQ=55.02;MQ0=0;MQRankSum=2.439;QD=12.33;ReadPosRankSum=-1.157;SB=-1.949e+03	GT:AD:DP:GQ:PL	0/1:82,191:273:99:3365,0,1136
chrXVI	17412	.	A	T	2433.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.698;DP=232;Dels=0.00;FS=1.105;HaplotypeScore=26.2292;MLEAC=1;MLEAF=0.500;MQ=45.65;MQ0=0;MQRankSum=-4.231;QD=10.49;ReadPosRankSum=0.133;SB=-1.434e+03	GT:AD:DP:GQ:PL	0/1:76,156:232:99:2463,0,1142
chrXVI	17634	.	T	G	7138.01	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=325;Dels=0.00;FS=0.000;HaplotypeScore=12.3734;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=10;MQRankSum=0.927;QD=21.96;ReadPosRankSum=1.721;SB=-3.601e+03	GT:AD:DP:GQ:PL	1/1:1,323:325:99:7138,769,0
chrXVI	17787	.	C	T	5033.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=7.721;DP=391;Dels=0.00;FS=2.439;HaplotypeScore=36.4069;MLEAC=1;MLEAF=0.500;MQ=39.20;MQ0=22;MQRankSum=-1.365;QD=12.87;ReadPosRankSum=-1.051;SB=-2.669e+03	GT:AD:DP:GQ:PL	0/1:111,279:391:99:5033,0,1463
chrXVI	17885	.	T	C	1341.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;DP=511;Dels=0.00;FS=91.640;HaplotypeScore=14.5672;MLEAC=1;MLEAF=0.500;MQ=44.53;MQ0=12;MQRankSum=-7.246;QD=2.62;ReadPosRankSum=2.771;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:389,117:511:99:1371,0,8464
chrXVI	17895	.	T	C	1082.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.145;DP=487;Dels=0.00;FS=85.413;HaplotypeScore=113.8705;MLEAC=1;MLEAF=0.500;MQ=44.70;MQ0=13;MQRankSum=-7.992;QD=2.22;ReadPosRankSum=2.283;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:382,105:487:99:1112,0,8157
chrXVI	17939	.	A	G	370.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.086;DP=394;Dels=0.00;FS=18.844;HaplotypeScore=19.0498;MLEAC=1;MLEAF=0.500;MQ=45.56;MQ0=14;MQRankSum=-6.419;QD=0.94;ReadPosRankSum=-2.832;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:319,70:394:99:400,0,7002
chrXVI	18079	.	G	A	96.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.949;DP=286;Dels=0.00;FS=61.601;HaplotypeScore=9.1079;MLEAC=1;MLEAF=0.500;MQ=27.26;MQ0=60;MQRankSum=-0.495;QD=0.34;ReadPosRankSum=-3.047;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:227,58:286:99:126,0,3794
chrXVI	18178	.	C	T	283.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;DP=320;Dels=0.00;FS=9.966;HaplotypeScore=20.9219;MLEAC=1;MLEAF=0.500;MQ=29.27;MQ0=59;MQRankSum=2.698;QD=0.88;ReadPosRankSum=-2.530;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:203,115:320:99:313,0,2372
chrXVI	18240	.	G	C	192.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;DP=281;Dels=0.00;FS=3.065;HaplotypeScore=13.5628;MLEAC=1;MLEAF=0.500;MQ=27.12;MQ0=77;MQRankSum=-1.034;QD=0.68;ReadPosRankSum=-2.519;SB=-1.901e+01	GT:AD:DP:GQ:PL	0/1:226,52:281:99:222,0,2008
chrXVI	18275	.	C	A	360.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.341;DP=288;Dels=0.00;FS=0.000;HaplotypeScore=16.4676;MLEAC=1;MLEAF=0.500;MQ=25.64;MQ0=84;MQRankSum=2.788;QD=1.25;ReadPosRankSum=-2.988;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:197,90:288:99:390,0,1765
chrXVI	18379	.	T	G	1240.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.427;DP=188;Dels=0.00;FS=0.000;HaplotypeScore=20.6001;MLEAC=1;MLEAF=0.500;MQ=40.98;MQ0=11;MQRankSum=2.158;QD=6.60;ReadPosRankSum=-0.860;SB=-4.100e+02	GT:AD:DP:GQ:PL	0/1:99,79:188:99:1270,0,1511
chrXVI	19214	.	C	T	209.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=55;MQRankSum=0.022;QD=1.42;ReadPosRankSum=0.716;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:112,34:147:99:239,0,1480
chrXVI	19227	.	A	G	107.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=10.4970;MLEAC=1;MLEAF=0.500;MQ=26.73;MQ0=41;MQRankSum=-1.797;QD=0.79;ReadPosRankSum=0.827;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:114,22:136:99:137,0,1793
chrXVI	19230	.	G	C	97.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=1;MLEAF=0.500;MQ=27.12;MQ0=35;MQRankSum=-1.062;QD=0.76;ReadPosRankSum=0.262;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:106,21:128:99:127,0,1695
chrXVI	19482	.	G	A	296.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DP=185;Dels=0.00;FS=77.925;HaplotypeScore=5.7294;MLEAC=1;MLEAF=0.500;MQ=48.54;MQ0=0;MQRankSum=-7.356;QD=1.60;ReadPosRankSum=-2.551;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:143,40:185:99:326,0,2761
chrXVI	19494	.	T	A	365.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;DP=200;Dels=0.00;FS=81.102;HaplotypeScore=12.2178;MLEAC=1;MLEAF=0.500;MQ=47.77;MQ0=0;MQRankSum=-6.841;QD=1.83;ReadPosRankSum=-0.010;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:156,44:200:99:395,0,3108
chrXVI	19545	.	A	G	189.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=150;Dels=0.00;FS=50.537;HaplotypeScore=12.6624;MLEAC=1;MLEAF=0.500;MQ=46.42;MQ0=0;MQRankSum=-5.261;QD=1.26;ReadPosRankSum=-0.614;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:120,29:150:99:219,0,2306
chrXVI	19989	.	G	C	1018.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;DP=122;Dels=0.00;FS=10.069;HaplotypeScore=13.9211;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=1.401;QD=8.34;ReadPosRankSum=0.736;SB=-4.530e+02	GT:AD:DP:GQ:PL	0/1:58,61:122:99:1048,0,793
chrXVI	20304	.	C	T	803.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DP=108;Dels=0.00;FS=9.249;HaplotypeScore=5.8746;MLEAC=1;MLEAF=0.500;MQ=58.93;MQ0=0;MQRankSum=1.793;QD=7.44;ReadPosRankSum=-1.329;SB=-4.460e+02	GT:AD:DP:GQ:PL	0/1:59,48:108:99:833,0,1014
chrXVI	20668	.	G	A	4085.01	PASS	AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.75;SB=-1.876e+03	GT:AD:DP:GQ:PL	1/1:0,171:172:99:4085,435,0
chrXVI	20683	.	A	T	1510.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DP=175;Dels=0.00;FS=2.684;HaplotypeScore=6.6128;MLEAC=1;MLEAF=0.500;MQ=58.54;MQ0=0;MQRankSum=0.112;QD=8.63;ReadPosRankSum=-0.025;SB=-7.180e+02	GT:AD:DP:GQ:PL	0/1:87,88:175:99:1540,0,1711
chrXVI	21541	.	T	C	1365.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.007;DP=165;Dels=0.00;FS=3.645;HaplotypeScore=12.9188;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=-0.337;QD=8.27;ReadPosRankSum=0.593;SB=-6.730e+02	GT:AD:DP:GQ:PL	0/1:87,77:165:99:1395,0,1559
chrXVI	21970	.	C	A	3345.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=11.0737;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=22.91;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,144:146:99:3345,354,0
chrXVI	22192	.	C	T	1383.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.804;DP=132;Dels=0.00;FS=6.559;HaplotypeScore=12.8525;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=-0.895;QD=10.48;ReadPosRankSum=1.202;SB=-3.060e+02	GT:AD:DP:GQ:PL	0/1:54,77:132:99:1413,0,940
chrXVI	22652	.	A	T	1129.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;DP=130;Dels=0.00;FS=2.216;HaplotypeScore=18.2134;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=0.819;QD=8.68;ReadPosRankSum=-1.363;SB=-6.710e+02	GT:AD:DP:GQ:PL	0/1:61,69:130:99:1159,0,923
chrXVI	22824	.	G	A	1072.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.005;DP=121;Dels=0.00;FS=0.680;HaplotypeScore=8.5661;MLEAC=1;MLEAF=0.500;MQ=57.48;MQ0=0;MQRankSum=-0.257;QD=8.86;ReadPosRankSum=0.496;SB=-7.020e+02	GT:AD:DP:GQ:PL	0/1:57,64:121:99:1102,0,928
chrXVI	22834	.	A	T	1065.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.487;DP=132;Dels=0.00;FS=4.168;HaplotypeScore=4.7321;MLEAC=1;MLEAF=0.500;MQ=57.69;MQ0=0;MQRankSum=-0.589;QD=8.07;ReadPosRankSum=-0.525;SB=-7.070e+02	GT:AD:DP:GQ:PL	0/1:61,71:132:99:1095,0,1184
chrXVI	23546	.	G	A	1413.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;DP=173;Dels=0.00;FS=2.748;HaplotypeScore=9.6855;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=-0.730;QD=8.17;ReadPosRankSum=0.094;SB=-7.300e+02	GT:AD:DP:GQ:PL	0/1:81,90:173:99:1443,0,1361
chrXVI	23660	.	G	A	2188.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;DP=209;Dels=0.00;FS=15.178;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=-0.086;QD=10.47;ReadPosRankSum=-0.768;SB=-7.180e+02	GT:AD:DP:GQ:PL	0/1:96,111:209:99:2218,0,1959
chrXVI	24494	.	A	G	1058.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DP=149;Dels=0.00;FS=2.255;HaplotypeScore=10.6422;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=-0.450;QD=7.10;ReadPosRankSum=0.680;SB=-3.300e+02	GT:AD:DP:GQ:PL	0/1:82,66:149:99:1088,0,1199
chrXVI	24575	.	T	C	1211.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880;DP=140;Dels=0.00;FS=0.638;HaplotypeScore=11.2432;MLEAC=1;MLEAF=0.500;MQ=57.83;MQ0=0;MQRankSum=1.446;QD=8.65;ReadPosRankSum=0.337;SB=-6.600e+02	GT:AD:DP:GQ:PL	0/1:66,69:140:99:1241,0,1164
chrXVI	24645	.	G	A	2840	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=10.3426;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.43;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:0,137:139:99:2873,306,0
chrXVI	24809	.	T	C	713.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=2.511;QD=8.01;ReadPosRankSum=-0.678;SB=-3.230e+02	GT:AD:DP:GQ:PL	0/1:47,42:89:99:743,0,899
chrXVI	24855	.	C	G	596.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.091;DP=96;Dels=0.00;FS=2.722;HaplotypeScore=7.3423;MLEAC=1;MLEAF=0.500;MQ=57.35;MQ0=0;MQRankSum=0.948;QD=6.21;ReadPosRankSum=0.356;SB=-3.250e+02	GT:AD:DP:GQ:PL	0/1:54,42:96:99:626,0,871
chrXVI	24966	.	A	T	684.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;DP=151;Dels=0.00;FS=9.932;HaplotypeScore=11.1920;MLEAC=1;MLEAF=0.500;MQ=52.18;MQ0=0;MQRankSum=-5.852;QD=4.53;ReadPosRankSum=0.416;SB=-6.630e+02	GT:AD:DP:GQ:PL	0/1:83,67:151:99:714,0,1620
chrXVI	24971	.	T	C	1584.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;DP=159;Dels=0.00;FS=4.769;HaplotypeScore=5.7259;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=8.270;QD=9.96;ReadPosRankSum=0.181;SB=-6.440e+02	GT:AD:DP:GQ:PL	0/1:73,86:159:99:1614,0,743
chrXVI	24974	.	G	T	803.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=8.012;DP=161;Dels=0.00;FS=5.818;HaplotypeScore=72.4729;MLEAC=1;MLEAF=0.500;MQ=51.88;MQ0=0;MQRankSum=-6.773;QD=4.99;ReadPosRankSum=0.102;SB=-7.650e+02	GT:AD:DP:GQ:PL	0/1:88,72:161:99:833,0,1662
chrXVI	24980	.	A	T	637.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;DP=167;Dels=0.00;FS=3.656;HaplotypeScore=80.0916;MLEAC=1;MLEAF=0.500;MQ=51.08;MQ0=0;MQRankSum=-8.728;QD=3.81;ReadPosRankSum=0.412;SB=-7.890e+02	GT:AD:DP:GQ:PL	0/1:92,75:167:99:667,0,1800
chrXVI	25057	.	G	A	708.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.293;DP=158;Dels=0.00;FS=4.705;HaplotypeScore=6.2547;MLEAC=1;MLEAF=0.500;MQ=54.32;MQ0=0;MQRankSum=-4.156;QD=4.48;ReadPosRankSum=-1.013;SB=-6.930e+02	GT:AD:DP:GQ:PL	0/1:80,77:158:99:738,0,1510
chrXVI	25069	.	T	C	721.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.577;DP=144;Dels=0.00;FS=2.086;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=55.31;MQ0=0;MQRankSum=-1.441;QD=5.01;ReadPosRankSum=1.477;SB=-6.130e+02	GT:AD:DP:GQ:PL	0/1:79,65:144:99:751,0,1617
chrXVI	25078	.	T	C	772.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300;DP=138;Dels=0.00;FS=0.630;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.46;MQ0=0;MQRankSum=-1.652;QD=5.59;ReadPosRankSum=1.468;SB=-5.980e+02	GT:AD:DP:GQ:PL	0/1:72,66:138:99:802,0,1392
chrXVI	25079	.	G	A	823.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.398;DP=138;Dels=0.00;FS=0.630;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=55.46;MQ0=0;MQRankSum=-3.284;QD=5.96;ReadPosRankSum=1.451;SB=-6.270e+02	GT:AD:DP:GQ:PL	0/1:72,66:138:99:853,0,1285
chrXVI	25149	.	C	T	526.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;DP=93;Dels=0.00;FS=3.915;HaplotypeScore=7.1416;MLEAC=1;MLEAF=0.500;MQ=52.51;MQ0=0;MQRankSum=-3.305;QD=5.66;ReadPosRankSum=0.150;SB=-4.610e+02	GT:AD:DP:GQ:PL	0/1:44,49:93:99:556,0,773
chrXVI	25159	.	G	T	650.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;DP=88;Dels=0.00;FS=5.452;HaplotypeScore=2.4095;MLEAC=1;MLEAF=0.500;MQ=52.35;MQ0=0;MQRankSum=-3.153;QD=7.39;ReadPosRankSum=-1.293;SB=-5.270e+02	GT:AD:DP:GQ:PL	0/1:37,51:88:99:680,0,679
chrXVI	25194	.	A	G	551.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.203;DP=78;Dels=0.00;FS=7.658;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=53.65;MQ0=0;MQRankSum=-2.231;QD=7.06;ReadPosRankSum=1.661;SB=-3.030e+02	GT:AD:DP:GQ:PL	0/1:37,41:78:99:581,0,741
chrXVI	25200	.	C	T	591.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;DP=77;Dels=0.00;FS=6.047;HaplotypeScore=3.1547;MLEAC=1;MLEAF=0.500;MQ=53.56;MQ0=0;MQRankSum=-2.512;QD=7.68;ReadPosRankSum=0.778;SB=-3.790e+02	GT:AD:DP:GQ:PL	0/1:34,42:77:99:621,0,633
chrXVI	25209	.	T	G	587.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=82;Dels=0.00;FS=5.755;HaplotypeScore=4.1441;MLEAC=1;MLEAF=0.500;MQ=53.22;MQ0=0;MQRankSum=-2.751;QD=7.16;ReadPosRankSum=-0.062;SB=-4.330e+02	GT:AD:DP:GQ:PL	0/1:35,46:82:99:617,0,589
chrXVI	25269	.	T	C	771.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.781;DP=107;Dels=0.00;FS=0.728;HaplotypeScore=6.4677;MLEAC=1;MLEAF=0.500;MQ=56.09;MQ0=0;MQRankSum=-0.863;QD=7.21;ReadPosRankSum=1.899;SB=-5.190e+02	GT:AD:DP:GQ:PL	0/1:54,52:107:99:801,0,1009
chrXVI	25476	.	T	C	869.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;DP=99;Dels=0.00;FS=1.674;HaplotypeScore=5.5554;MLEAC=1;MLEAF=0.500;MQ=55.80;MQ0=0;MQRankSum=2.320;QD=8.78;ReadPosRankSum=1.439;SB=-4.110e+02	GT:AD:DP:GQ:PL	0/1:49,48:99:99:899,0,735
chrXVI	25524	.	A	G	2221	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.8561;MLEAC=2;MLEAF=1.00;MQ=51.25;MQ0=0;QD=20.38;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2254,246,0
chrXVI	25536	.	C	T	2639	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=21.46;SB=-1.505e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2672,288,0
chrXVI	25566	.	T	C	2707	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=130;Dels=0.00;FS=3.035;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;MQRankSum=0.672;QD=20.82;ReadPosRankSum=2.412;SB=-1.564e+03	GT:AD:DP:GQ:PL	1/1:2,128:130:99:2740,300,0
chrXVI	25632	.	A	G	2005	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0770;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=21.11;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2038,225,0
chrXVI	26034	.	G	A	269.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DP=55;Dels=0.00;FS=10.491;HaplotypeScore=5.2464;MLEAC=1;MLEAF=0.500;MQ=31.84;MQ0=1;MQRankSum=-1.970;QD=4.89;ReadPosRankSum=-1.603;SB=-1.370e+02	GT:AD:DP:GQ:PL	0/1:16,39:55:99:299,0,214
chrXVI	26069	.	G	C	453	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=7.19;SB=-2.090e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:54:486,54,0
chrXVI	26081	.	G	A	734	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;QD=10.96;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:84:767,84,0
chrXVI	26082	.	T	C	655	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.137;DP=67;Dels=0.00;FS=2.615;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.32;MQ0=0;MQRankSum=-2.046;QD=9.78;ReadPosRankSum=2.895;SB=-3.367e+02	GT:AD:DP:GQ:PL	1/1:3,64:67:78:688,78,0
chrXVI	26084	.	A	G	706	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=9.67;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:87:739,87,0
chrXVI	26085	.	A	G	647	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;MQRankSum=-1.806;QD=8.86;ReadPosRankSum=2.848;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:4,69:73:81:680,81,0
chrXVI	26267	.	A	G	2316	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=23.39;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2349,270,0
chrXVI	26397	.	A	G	1562	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=21.11;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1595,174,0
chrXVI	26802	.	A	G	2246	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.99;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2279,249,0
chrXVI	27117	.	G	C	1074	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.18;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1107,126,0
chrXVI	27655	.	T	C	1398	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.26;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1431,159,0
chrXVI	28486	.	A	G	2106	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.78;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2139,231,0
chrXVI	29749	.	C	T	1682	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.13;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1715,183,0
chrXVI	29904	.	T	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.82;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1480,159,0
chrXVI	31585	.	C	T	1312	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.02;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1345,141,0
chrXVI	31657	.	G	A	1148	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.13;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1181,132,0
chrXVI	31714	.	T	C	804	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.70;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:93:837,93,0
chrXVI	32212	.	G	A	2232	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.53;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2265,246,0
chrXVI	32365	.	T	C	1931	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.778;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.661;QD=19.70;ReadPosRankSum=1.697;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1964,197,0
chrXVI	32470	.	A	G	2363	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.88;SB=-1.373e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2396,267,0
chrXVI	32572	.	A	G	1928	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=22.42;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1961,216,0
chrXVI	32702	.	A	G	1524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-1.152;QD=19.79;ReadPosRankSum=2.385;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1557,171,0
chrXVI	32816	.	G	A	1718	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.0440;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.95;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1751,183,0
chrXVI	32917	.	G	A	3726.01	PASS	AC=2;AF=1.00;AN=2;DP=155;Dels=0.00;FS=0.000;HaplotypeScore=11.9951;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=24.04;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,155:155:99:3726,396,0
chrXVI	33498	.	A	G	2467	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=20.06;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2500,285,0
chrXVI	33642	.	A	T	1724	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.067;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.192;QD=22.39;ReadPosRankSum=1.687;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1757,186,0
chrXVI	33753	.	T	C	751	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=19.26;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:84:784,84,0
chrXVI	33804	.	T	C	1090	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.19;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1123,126,0
chrXVI	33858	.	A	G	1636	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1669,186,0
chrXVI	33951	.	T	C	2215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=10.5434;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;MQRankSum=0.949;QD=20.90;ReadPosRankSum=0.105;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:2,103:106:99:2248,249,0
chrXVI	34248	.	C	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1911,207,0
chrXVI	34350	.	A	T	1655	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.67;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1688,180,0
chrXVI	34401	.	T	C	1369	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.74;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1402,156,0
chrXVI	34470	.	T	C	1370	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.8978;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=18.51;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1403,159,0
chrXVI	34506	.	C	T	1256	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.32;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1289,138,0
chrXVI	34641	.	A	G	1767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=86;Dels=0.00;FS=3.217;HaplotypeScore=5.6149;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-1.370;QD=20.55;ReadPosRankSum=1.692;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1800,204,0
chrXVI	34674	.	T	C	2172	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=10.1489;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.62;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2205,249,0
chrXVI	34989	.	T	C	3434.01	PASS	AC=2;AF=1.00;AN=2;DP=151;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=56.06;MQ0=0;QD=22.74;SB=-1.690e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3434,372,0
chrXVI	35005	.	C	T	3505.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.601;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=0.504;QD=22.04;ReadPosRankSum=-1.316;SB=-1.758e+03	GT:AD:DP:GQ:PL	1/1:1,158:159:99:3505,378,0
chrXVI	35220	.	C	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.59;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1393,153,0
chrXVI	35338	.	T	A	2015	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=21.21;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2048,222,0
chrXVI	35342	.	A	G	1769	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=-0.289;QD=18.43;ReadPosRankSum=1.480;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1802,198,0
chrXVI	35346	.	T	C	1775	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=95;Dels=0.00;FS=8.263;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;MQRankSum=-0.350;QD=18.68;ReadPosRankSum=2.398;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1808,201,0
chrXVI	35385	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=15.59;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1436,153,0
chrXVI	35391	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=46.95;MQ0=0;QD=15.13;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1289,141,0
chrXVI	35451	.	C	T	1280	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.10;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1313,141,0
chrXVI	35512	.	A	G	1341	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=20.95;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1374,153,0
chrXVI	35541	.	C	T	1401	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=17.51;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1434,156,0
chrXVI	35557	.	G	A	1523	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=17.31;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1556,165,0
chrXVI	35577	.	G	A	1678	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.6742;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=16.45;SB=-1.294e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1711,186,0
chrXVI	35664	.	G	A	1780	SnpCluster	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.31;MQ0=0;QD=23.12;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1813,195,0
chrXVI	35667	.	G	A	1814	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.11;MQ0=0;QD=22.12;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1847,198,0
chrXVI	35673	.	G	T	1717	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=20.69;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1750,192,0
chrXVI	35711	.	C	T	1096	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=17.97;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1129,120,0
chrXVI	35724	.	T	C	1049	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.51;MQ0=0;MQRankSum=-0.635;QD=17.48;ReadPosRankSum=1.675;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1082,120,0
chrXVI	35760	.	C	T	1176	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.87;MQ0=0;QD=18.97;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1209,135,0
chrXVI	35776	.	G	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=50.51;MQ0=0;QD=14.66;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,71:80:99:1206,129,0
chrXVI	35931	.	C	T	2190	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.1905;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=23.30;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2223,237,0
chrXVI	36074	.	T	C	2322	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.0937;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=21.91;SB=-1.284e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2355,264,0
chrXVI	36081	.	C	T	2289	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=5.2519;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=21.00;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2322,252,0
chrXVI	36100	.	T	C	2549	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=21.07;SB=-1.472e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2582,282,0
chrXVI	36252	.	G	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.46;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1417,159,0
chrXVI	36315	.	G	A	1937	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.76;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1970,210,0
chrXVI	36342	.	G	A	2329	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=21.56;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2362,252,0
chrXVI	36372	.	G	A	2068	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=5.6690;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.15;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2101,225,0
chrXVI	36468	.	G	A	2041	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.43;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,88:91:99:2074,222,0
chrXVI	36549	.	C	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=20.89;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1516,159,0
chrXVI	36564	.	G	A	1333	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=18.77;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1366,147,0
chrXVI	36714	.	A	G	2364	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=100;Dels=0.00;FS=3.098;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.520;QD=23.64;ReadPosRankSum=1.697;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2397,258,0
chrXVI	36818	.	G	A	2285	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=10.1434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.85;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2318,246,0
chrXVI	36977	.	C	T	2120	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=6.4942;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=23.04;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2153,228,0
chrXVI	37078	.	C	T	2363	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.48;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2396,252,0
chrXVI	37088	.	G	A	2319	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=21.47;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2352,252,0
chrXVI	37233	.	A	G	1809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;DP=87;Dels=0.00;FS=6.931;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;MQRankSum=0.587;QD=20.79;ReadPosRankSum=2.393;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:2,84:87:99:1842,210,0
chrXVI	37347	.	A	C	1630	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;MQRankSum=0.795;QD=18.95;ReadPosRankSum=1.691;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1663,183,0
chrXVI	37355	.	A	G	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.8500;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=-1.294;QD=19.36;ReadPosRankSum=1.573;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1737,189,0
chrXVI	37424	.	G	A	1906	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.84;MQ0=0;QD=16.29;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:1939,204,0
chrXVI	37447	.	C	A	1476	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.91;MQ0=0;QD=12.95;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:1509,165,0
chrXVI	37452	.	T	A	1310	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=11.80;SB=-1.119e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1343,150,0
chrXVI	37477	.	T	C	876	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.87;MQ0=0;QD=8.76;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:909,102,0
chrXVI	37482	.	T	C	780	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;MQRankSum=1.625;QD=8.04;ReadPosRankSum=1.696;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:93:813,93,0
chrXVI	37503	.	T	C	611	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.04;MQ0=0;QD=6.43;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:72:644,72,0
chrXVI	37527	.	G	A	463	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=5.58;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:57:496,57,0
chrXVI	37556	.	T	C	480	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=6.49;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:60:513,60,0
chrXVI	37569	.	C	T	376	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=5.61;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:45:409,45,0
chrXVI	37575	.	G	A	406	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=6.34;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:48:439,48,0
chrXVI	37721	.	A	C	2005	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.977;DP=109;Dels=0.00;FS=14.005;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=2.086;QD=18.39;ReadPosRankSum=3.615;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:6,102:109:99:2038,225,0
chrXVI	37864	.	A	G	2800	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=124;Dels=0.00;FS=5.387;HaplotypeScore=5.6942;MLEAC=2;MLEAF=1.00;MQ=52.74;MQ0=0;MQRankSum=0.873;QD=22.58;ReadPosRankSum=1.646;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:1,120:124:99:2833,309,0
chrXVI	37899	.	T	C	2096	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;MQRankSum=0.625;QD=21.61;ReadPosRankSum=1.696;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2129,231,0
chrXVI	37911	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=21.25;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1903,207,0
chrXVI	37953	.	T	C	1139	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.64;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1172,132,0
chrXVI	38082	.	A	G	3109	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=7.4282;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;MQRankSum=0.823;QD=21.15;ReadPosRankSum=1.683;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:1,140:147:99:3142,351,0
chrXVI	38237	.	G	A	1229	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=7.4466;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.82;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1262,141,0
chrXVI	38357	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.73;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1588,174,0
chrXVI	38388	.	G	A	1976	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.00;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2009,210,0
chrXVI	38391	.	G	A	1719	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=16.53;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1752,195,0
chrXVI	38453	.	C	A	2396	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.87;SB=-1.546e+03	GT:AD:DP:GQ:PL	1/1:0,125:127:99:2429,261,0
chrXVI	38493	.	T	G	2151	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=100;Dels=0.00;FS=3.100;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;MQRankSum=1.202;QD=21.51;ReadPosRankSum=1.661;SB=-1.234e+03	GT:AD:DP:GQ:PL	1/1:1,97:100:99:2184,240,0
chrXVI	38521	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.7065;MLEAC=2;MLEAF=1.00;MQ=53.19;MQ0=0;QD=21.00;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1566,165,0
chrXVI	38651	.	G	A	601	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=20.03;SB=-2.270e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:634,69,0
chrXVI	38867	.	C	G	760	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.78;MQ0=0;QD=15.51;SB=-9.001e+01	GT:AD:DP:GQ:PL	1/1:0,49:49:90:793,90,0
chrXVI	38891	.	G	A	524	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9806;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;MQRankSum=-0.217;QD=13.79;ReadPosRankSum=-1.191;SB=-8.290e+01	GT:AD:DP:GQ:PL	1/1:3,35:38:60:557,60,0
chrXVI	38892	.	T	C	503	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.687;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9806;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=0;MQRankSum=-0.024;QD=13.24;ReadPosRankSum=-0.262;SB=-8.097e+01	GT:AD:DP:GQ:PL	1/1:4,34:38:60:536,60,0
chrXVI	38907	.	G	T	395	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=24.1757;MLEAC=2;MLEAF=1.00;MQ=43.13;MQ0=0;QD=11.97;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:51:428,51,0
chrXVI	39105	.	A	G	1110	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=24.67;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1143,126,0
chrXVI	39354	.	A	G	1209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.231;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;MQRankSum=1.501;QD=20.15;ReadPosRankSum=1.097;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1242,138,0
chrXVI	39420	.	C	T	1196	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.98;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1229,138,0
chrXVI	40222	.	C	A	15.88	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.961;DP=77;Dels=0.00;FS=9.381;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=-1.619;QD=0.21;ReadPosRankSum=-2.935;SB=-5.676e+01	GT:AD:DP:GQ:PL	1/1:74,3:77:6:47,6,0
chrXVI	40254	.	T	G	1366	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=54.87;MQ0=0;QD=18.46;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1399,150,0
chrXVI	40308	.	G	T	1493	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=77.3727;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=18.21;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1526,162,0
chrXVI	40344	.	C	T	1231	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=16.20;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1264,132,0
chrXVI	40345	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=16.08;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1255,132,0
chrXVI	40425	.	T	C	1051	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=15.01;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1084,123,0
chrXVI	40429	.	G	T	950	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=35.8821;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=14.62;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:983,108,0
chrXVI	40462	.	A	T	426	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=8.35;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:51:459,51,0
chrXVI	40463	.	T	A	422	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=8.27;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:51:455,51,0
chrXVI	40487	.	T	C	212.01	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=4.93;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:27:245,27,0
chrXVI	40500	.	T	C	229	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=6.54;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:30:262,30,0
chrXVI	40601	.	T	C	1258	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.66;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1291,141,0
chrXVI	40768	.	T	C	864	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.43;MQ0=0;QD=16.62;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:897,99,0
chrXVI	40837	.	A	T	1050	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=41.54;MQ0=0;QD=19.81;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1083,117,0
chrXVI	40976	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.9774;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;MQRankSum=1.001;QD=21.52;ReadPosRankSum=1.694;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1970,219,0
chrXVI	41008	.	G	C	2119	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=79.9444;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=23.81;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2152,237,0
chrXVI	41146	.	A	C	1180	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.35;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1213,135,0
chrXVI	41150	.	C	T	1035	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.5501;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=15.45;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1068,114,0
chrXVI	41264	.	T	C	1668	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=18.74;SB=-1.028e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1701,192,0
chrXVI	41273	.	C	T	1742	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.07;MQ0=0;QD=20.02;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1775,189,0
chrXVI	41378	.	A	G	1184	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=0.241;QD=16.22;ReadPosRankSum=1.684;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1217,135,0
chrXVI	41379	.	T	A	1215	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=50.94;MQ0=0;QD=16.87;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1248,135,0
chrXVI	41663	.	C	T	987	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=18.98;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1020,108,0
chrXVI	41705	.	C	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=18.31;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1278,135,0
chrXVI	41879	.	T	C	856	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=4.7828;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=17.12;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:889,99,0
chrXVI	42125	.	G	T	1664	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.80;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1697,183,0
chrXVI	42416	.	T	A	1329	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.46;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1362,150,0
chrXVI	42781	.	T	G	1023	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.46;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1056,114,0
chrXVI	42967	.	C	T	827	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=21.21;SB=-1.990e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:93:860,93,0
chrXVI	42970	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=19.73;SB=-1.630e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:763,84,0
chrXVI	43242	.	A	G	1484	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=23.94;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1517,168,0
chrXVI	43601	.	A	G	1010	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.80;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1043,114,0
chrXVI	43754	.	C	T	1649	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5246;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.14;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1682,183,0
chrXVI	43802	.	C	T	1605	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.9244;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.12;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1638,171,0
chrXVI	44051	.	A	C	1947	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.40;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1980,219,0
chrXVI	44122	.	G	T	1317	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.55;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1350,144,0
chrXVI	44258	.	A	G	1719	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.49;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1752,192,0
chrXVI	44377	.	T	G	1102	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.68;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1135,123,0
chrXVI	44552	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=14.0423;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;MQRankSum=0.115;QD=19.49;ReadPosRankSum=1.501;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1514,171,0
chrXVI	44755	.	T	C	1174	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.25;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1207,132,0
chrXVI	44764	.	T	C	1135	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=19.24;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1168,129,0
chrXVI	44799	.	G	A	721	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=15.02;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:81:754,81,0
chrXVI	44845	.	G	C	1021	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=18.91;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1054,114,0
chrXVI	44920	.	C	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=14.45;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1218,138,0
chrXVI	44929	.	G	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=15.27;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1316,141,0
chrXVI	45173	.	G	A	1098	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.8766;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=18.61;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1131,120,0
chrXVI	45271	.	G	A	1182	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=16.19;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1215,129,0
chrXVI	45292	.	C	T	1245	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=17.54;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1278,135,0
chrXVI	45559	.	T	C	436	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=15.03;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,28:29:51:469,51,0
chrXVI	45800	.	G	T	1263	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.55;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1296,138,0
chrXVI	45925	.	G	A	1077	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.6559;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=20.71;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1110,123,0
chrXVI	45934	.	G	A	1128	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=21.69;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1161,123,0
chrXVI	45974	.	A	G	808	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=18.79;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:841,93,0
chrXVI	46462	.	A	G	875	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.44;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:908,99,0
chrXVI	46831	.	A	G	1101	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1134,129,0
chrXVI	46921	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.424;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=0.840;QD=21.00;ReadPosRankSum=1.680;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1419,162,0
chrXVI	47119	.	G	A	1365	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.78;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1398,153,0
chrXVI	47208	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=19.57;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1227,132,0
chrXVI	47273	.	T	C	1796	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.5319;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;MQRankSum=1.178;QD=23.63;ReadPosRankSum=1.686;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1829,195,0
chrXVI	48511	.	C	T	1505	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.67;MQ0=0;QD=20.07;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1538,165,0
chrXVI	48600	.	G	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=47.54;MQ0=0;QD=18.07;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1298,138,0
chrXVI	48853	.	A	G	1260	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=90;Dels=0.00;FS=11.091;HaplotypeScore=4.1896;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=0;MQRankSum=-2.045;QD=14.00;ReadPosRankSum=2.922;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:3,87:90:99:1293,141,0
chrXVI	48861	.	A	G	1029	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.335;DP=86;Dels=0.00;FS=6.931;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=0;MQRankSum=-2.307;QD=11.97;ReadPosRankSum=2.393;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1062,117,0
chrXVI	48872	.	G	C	943	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=11.64;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:976,108,0
chrXVI	48882	.	G	A	864	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.08;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:897,99,0
chrXVI	48890	.	A	G	786	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.07;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:93:819,93,0
chrXVI	48893	.	G	A	752	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.57;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:87:785,87,0
chrXVI	48910	.	C	T	786	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.89;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:87:819,87,0
chrXVI	48912	.	C	T	812	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.31;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:87:845,87,0
chrXVI	48923	.	A	G	648	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.57;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:75:681,75,0
chrXVI	48925	.	T	C	611	SnpCluster	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.91;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:69:644,69,0
chrXVI	48927	.	A	C	663	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.82;MQ0=0;QD=11.63;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:78:696,78,0
chrXVI	48951	.	A	G	695	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.31;MQ0=0;QD=11.78;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:78:728,78,0
chrXVI	48978	.	G	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=16.19;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1312,141,0
chrXVI	48995	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=16.16;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,85:91:99:1504,168,0
chrXVI	49036	.	A	G	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.710;DP=95;Dels=0.00;FS=6.012;HaplotypeScore=8.6681;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.097;QD=19.16;ReadPosRankSum=2.925;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:3,91:95:99:1853,213,0
chrXVI	49093	.	A	G	1326	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=-1.097;QD=22.10;ReadPosRankSum=1.675;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1359,150,0
chrXVI	50580	.	G	A	1197	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=22.58;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1230,135,0
chrXVI	50769	.	A	G	3035	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.82;SB=-1.520e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3068,333,0
chrXVI	50846	.	A	G	3079	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=25.24;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,121:122:99:3112,336,0
chrXVI	50873	.	G	A	3083	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=25.07;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3116,327,0
chrXVI	50972	.	T	C	1966	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.722;DP=105;Dels=0.00;FS=20.247;HaplotypeScore=9.3869;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=-0.240;QD=18.72;ReadPosRankSum=2.914;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:3,102:105:99:1999,219,0
chrXVI	51271	.	A	G	1887	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=13.0135;MLEAC=2;MLEAF=1.00;MQ=60.71;MQ0=0;QD=21.20;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1920,216,0
chrXVI	51430	.	C	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.41;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1489,165,0
chrXVI	52783	.	C	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.5875;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.93;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1642,174,0
chrXVI	52839	.	A	T	1657	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.949;QD=19.27;ReadPosRankSum=1.608;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1690,186,0
chrXVI	54905	.	A	C	1731	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.02;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1764,198,0
chrXVI	55419	.	C	T	2159	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.26;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:2192,243,0
chrXVI	55474	.	G	A	1876	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.81;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1909,207,0
chrXVI	62720	.	A	T	192.01	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=34.40;MQ0=0;QD=4.09;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:27:225,27,0
chrXVI	64516	.	G	A	1635	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1668,180,0
chrXVI	65188	.	G	A	1891	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.74;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1924,204,0
chrXVI	66198	.	A	G	1393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.076;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=20.79;ReadPosRankSum=1.681;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1426,159,0
chrXVI	66527	.	A	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=13.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1581,174,0
chrXVI	67558	.	T	C	732	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=21.53;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:84:765,84,0
chrXVI	67723	.	C	A	1444	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.2266;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=22.56;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1477,156,0
chrXVI	68882	.	G	C	2238	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.16;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2271,252,0
chrXVI	69214	.	A	T	1871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.924;DP=92;Dels=0.00;FS=2.592;HaplotypeScore=5.4952;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=0.286;QD=20.34;ReadPosRankSum=2.814;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:3,89:92:99:1904,210,0
chrXVI	69231	.	A	G	1789	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.4264;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=21.30;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1822,198,0
chrXVI	69311	.	A	T	1574	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.99;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1607,171,0
chrXVI	69355	.	T	G	1453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=77;Dels=0.00;FS=7.289;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;MQRankSum=1.178;QD=18.87;ReadPosRankSum=1.686;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1486,162,0
chrXVI	69402	.	T	A	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.980;DP=86;Dels=0.00;FS=13.576;HaplotypeScore=6.3051;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.631;QD=18.24;ReadPosRankSum=2.127;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:2,84:86:99:1602,171,0
chrXVI	69892	.	T	A	821	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.02;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:854,93,0
chrXVI	70402	.	A	G	4291.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;DP=190;Dels=0.00;FS=9.161;HaplotypeScore=16.6895;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=-0.878;QD=22.58;ReadPosRankSum=3.413;SB=-2.344e+03	GT:AD:DP:GQ:PL	1/1:4,182:190:99:4291,468,0
chrXVI	70567	.	A	C	1580	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=20.52;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1613,180,0
chrXVI	71126	.	T	A	2181	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.5854;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.77;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2214,237,0
chrXVI	72276	.	T	C	2054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.660;QD=21.40;ReadPosRankSum=1.660;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:1,95:96:99:2087,234,0
chrXVI	72506	.	G	T	1668	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=22.24;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1701,189,0
chrXVI	73071	.	G	A	1158	filter	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=17.82;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1191,126,0
chrXVI	73249	.	T	A	815	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=22.03;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:90:848,90,0
chrXVI	73338	.	C	G	852	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.34;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,35:35:96:885,96,0
chrXVI	73474	.	T	C	1278	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=0.397;QD=24.11;ReadPosRankSum=2.264;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:2,51:53:99:1311,144,0
chrXVI	73851	.	T	C	669	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=13.12;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:78:702,78,0
chrXVI	73889	.	G	A	1319	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=15.16;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1352,144,0
chrXVI	74040	.	G	C	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.088;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.674;QD=21.79;ReadPosRankSum=1.674;SB=-3.220e+02	GT:AD:DP:GQ:PL	1/1:1,58:61:99:1362,150,0
chrXVI	74327	.	C	T	2508	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=12.8036;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=21.62;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2541,276,0
chrXVI	74699	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5975;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.59;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1660,177,0
chrXVI	74884	.	G	C	1255	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=17.43;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1288,141,0
chrXVI	74885	.	C	T	1242	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=72;Dels=0.00;FS=3.889;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.561;QD=17.25;ReadPosRankSum=-0.171;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1275,141,0
chrXVI	75197	.	G	C	1897	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=21.56;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1930,213,0
chrXVI	75355	.	A	G	1052	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=23.38;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1085,117,0
chrXVI	75921	.	G	A	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=-0.424;QD=21.25;ReadPosRankSum=-0.990;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2137,210,0
chrXVI	76123	.	C	T	1276	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.4301;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=24.08;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1309,138,0
chrXVI	76198	.	C	T	1723	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=19.80;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1756,189,0
chrXVI	77440	.	A	G	1862	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.27;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1895,213,0
chrXVI	78094	.	T	G	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.253;DP=94;Dels=0.00;FS=3.603;HaplotypeScore=11.1037;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-1.437;QD=17.67;ReadPosRankSum=1.622;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1694,189,0
chrXVI	78691	.	T	A	1071	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.42;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1104,117,0
chrXVI	79268	.	C	A	1026	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=17.69;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1059,111,0
chrXVI	79670	.	T	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.75;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1512,165,0
chrXVI	80834	.	T	C	1252	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.76;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1285,141,0
chrXVI	80992	.	A	G	1162	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.4585;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.03;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1195,132,0
chrXVI	81157	.	G	A	1237	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.28;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1270,135,0
chrXVI	82074	.	C	G	2162	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.83;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2195,249,0
chrXVI	82177	.	C	T	2016	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.20;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2049,219,0
chrXVI	82212	.	G	A	1974	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=8.0446;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.18;SB=-1.019e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:2007,213,0
chrXVI	83595	.	C	T	1191	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=24.31;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1224,132,0
chrXVI	84945	.	G	A	1577	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6450;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=19.47;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1610,180,0
chrXVI	86390	.	C	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.52;SB=-1.155e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2013,213,0
chrXVI	86437	.	T	C	2317	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.7627;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=21.45;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2350,261,0
chrXVI	86479	.	A	C	2013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=4.723;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;MQRankSum=-0.253;QD=22.37;ReadPosRankSum=1.693;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,88:90:99:2046,225,0
chrXVI	86539	.	C	G	1432	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.89;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1465,165,0
chrXVI	86542	.	T	C	1407	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=-0.670;QD=18.76;ReadPosRankSum=1.594;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1440,159,0
chrXVI	86653	.	T	C	766	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=14.45;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:93:799,93,0
chrXVI	86689	.	T	C	584	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.7124;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=12.70;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,43:46:69:617,69,0
chrXVI	86716	.	G	A	740	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=16.82;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:84:773,84,0
chrXVI	86878	.	C	T	1769	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0923;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=23.28;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1802,192,0
chrXVI	86905	.	C	T	2032	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=22.58;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2065,216,0
chrXVI	87058	.	G	T	1287	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=23.83;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1320,135,0
chrXVI	87060	.	G	C	1179	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=22.67;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1212,135,0
chrXVI	87311	.	A	C	1726	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=21.05;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1759,195,0
chrXVI	87374	.	C	T	2485	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=9.7482;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=23.01;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2518,279,0
chrXVI	87434	.	A	G	2006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=3.317;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;MQRankSum=0.433;QD=22.80;ReadPosRankSum=1.693;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2039,225,0
chrXVI	87500	.	T	C	1407	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.81;MQ0=0;QD=18.04;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1440,159,0
chrXVI	87503	.	T	G	1427	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=80;Dels=0.00;FS=5.174;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;MQRankSum=-1.644;QD=17.84;ReadPosRankSum=1.688;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,78:80:99:1460,162,0
chrXVI	87521	.	G	A	1270	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=15.68;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1303,141,0
chrXVI	87536	.	C	T	1281	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=16.22;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1314,141,0
chrXVI	87677	.	G	A	1745	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.29;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1778,189,0
chrXVI	87803	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.8027;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.504;QD=19.69;ReadPosRankSum=1.687;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1549,171,0
chrXVI	87892	.	A	C	1527	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=21.21;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1560,171,0
chrXVI	87944	.	A	G	1505	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.010;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;MQRankSum=-0.297;QD=21.50;ReadPosRankSum=1.683;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1538,168,0
chrXVI	88210	.	A	G	1589	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;MQRankSum=1.413;QD=20.64;ReadPosRankSum=1.641;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1622,177,0
chrXVI	88281	.	A	G	1741	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=20.73;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1774,195,0
chrXVI	88438	.	T	C	2285	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.234;DP=116;Dels=0.00;FS=6.864;HaplotypeScore=9.3982;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.371;QD=19.70;ReadPosRankSum=2.385;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:2,112:116:99:2318,261,0
chrXVI	88600	.	T	C	1156	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.41;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1189,129,0
chrXVI	88778	.	C	T	2583	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.3304;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.70;SB=-1.473e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2616,276,0
chrXVI	88972	.	A	G	775	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;QD=17.61;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:808,87,0
chrXVI	88981	.	A	G	773	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.85;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:87:806,87,0
chrXVI	89075	.	G	T	1587	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.35;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1620,168,0
chrXVI	89101	.	T	G	1642	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.52;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1675,186,0
chrXVI	89283	.	T	C	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9244;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;MQRankSum=-1.342;QD=18.85;ReadPosRankSum=1.689;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1560,174,0
chrXVI	89305	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.92;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1587,174,0
chrXVI	89899	.	A	G	1862	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.289;DP=92;Dels=0.00;FS=2.610;HaplotypeScore=10.5261;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.281;QD=20.24;ReadPosRankSum=2.396;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1895,210,0
chrXVI	91540	.	T	C	1293	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=3.193;HaplotypeScore=4.7762;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.024;QD=17.71;ReadPosRankSum=1.637;SB=-8.640e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1326,147,0
chrXVI	91741	.	G	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.73;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1090,120,0
chrXVI	91999	.	T	C	1043	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.73;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1076,117,0
chrXVI	92128	.	A	G	824	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.0911;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.16;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,41:43:93:857,93,0
chrXVI	93434	.	A	G	1632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.796;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=-0.663;QD=20.40;ReadPosRankSum=2.327;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1665,189,0
chrXVI	93712	.	T	C	1367	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=19.53;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1400,159,0
chrXVI	93759	.	G	C	1313	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=20.84;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1346,147,0
chrXVI	93786	.	A	G	1186	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=22.81;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1219,132,0
chrXVI	93996	.	A	G	775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.646;QD=19.37;ReadPosRankSum=1.646;SB=-4.220e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:87:808,87,0
chrXVI	94218	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.54;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:867,96,0
chrXVI	94414	.	C	T	1182	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.4786;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.89;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1215,129,0
chrXVI	94774	.	T	G	1382	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=19.46;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1415,159,0
chrXVI	94919	.	G	T	1502	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.7961;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.09;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1535,162,0
chrXVI	95158	.	T	C	1324	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=63.3224;MLEAC=2;MLEAF=1.00;MQ=37.15;MQ0=0;QD=15.22;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1357,147,0
chrXVI	95173	.	C	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=36.07;MQ0=0;QD=10.16;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1130,123,0
chrXVI	95177	.	G	T	1044	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=37.10;MQ0=0;QD=10.14;SB=-1.151e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1077,114,0
chrXVI	95193	.	T	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.73;MQ0=0;QD=9.27;SB=-1.350e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:1108,120,0
chrXVI	95212	.	G	C	1499	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=43.76;MQ0=0;QD=11.44;SB=-1.684e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:1532,168,0
chrXVI	95316	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.643;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=-0.247;QD=20.29;ReadPosRankSum=1.642;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1595,177,0
chrXVI	95370	.	C	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.4128;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=20.38;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,65:68:99:1419,153,0
chrXVI	95448	.	T	A	1433	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=22.39;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1466,156,0
chrXVI	95576	.	C	T	962	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.23;MQ0=0;QD=17.18;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:995,105,0
chrXVI	95591	.	C	A	1005	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=18.27;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1038,114,0
chrXVI	95750	.	A	G	1209	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.72;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1242,135,0
chrXVI	95868	.	A	G	795	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.87;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:93:828,93,0
chrXVI	96008	.	T	C	1613	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=19.67;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1646,180,0
chrXVI	96363	.	A	G	1309	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=17.93;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1342,147,0
chrXVI	96371	.	C	T	1352	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3114;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=15.02;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1385,153,0
chrXVI	96475	.	T	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;QD=18.30;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1515,159,0
chrXVI	96486	.	G	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1379;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=18.09;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1480,162,0
chrXVI	96934	.	T	C	1000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.011;QD=20.83;ReadPosRankSum=1.660;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1033,114,0
chrXVI	97162	.	C	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=22.64;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1233,132,0
chrXVI	97252	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=56;Dels=0.00;FS=3.090;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;MQRankSum=1.228;QD=19.18;ReadPosRankSum=1.606;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:1,54:56:99:1107,126,0
chrXVI	97663	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.108;DP=64;Dels=0.00;FS=4.051;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=43.57;MQ0=0;MQRankSum=-0.142;QD=15.72;ReadPosRankSum=1.675;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,60:64:95:1039,95,0
chrXVI	97669	.	A	T	879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;DP=58;Dels=0.00;FS=11.831;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.17;MQ0=0;MQRankSum=-1.685;QD=15.16;ReadPosRankSum=2.739;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:3,55:58:99:912,99,0
chrXVI	97696	.	G	A	828	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.52;MQ0=0;QD=14.53;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:93:861,93,0
chrXVI	97708	.	A	G	622	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=37.98;MQ0=0;QD=11.31;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:75:655,75,0
chrXVI	97714	.	C	T	630	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.29;MQ0=0;QD=11.89;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:75:663,75,0
chrXVI	97885	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.13;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1759,189,0
chrXVI	97912	.	G	A	1572	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=18.07;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1605,168,0
chrXVI	98068	.	T	C	1105	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;QD=18.11;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1138,129,0
chrXVI	98320	.	T	C	1282	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.85;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1315,141,0
chrXVI	98464	.	C	T	986	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.33;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1019,108,0
chrXVI	98717	.	G	A	1153	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.35;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1186,126,0
chrXVI	98881	.	G	T	776	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.40;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:87:809,87,0
chrXVI	98933	.	T	C	1307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=60;Dels=0.00;FS=3.085;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.851;QD=21.78;ReadPosRankSum=1.615;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1340,150,0
chrXVI	99018	.	G	A	1301	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.02;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1334,141,0
chrXVI	99139	.	C	T	1340	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.63;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1373,147,0
chrXVI	99146	.	C	T	1323	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=16.75;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1356,144,0
chrXVI	99260	.	A	C	1375	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.92;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1408,153,0
chrXVI	99582	.	A	C	1474	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6027;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=-1.400;QD=20.19;ReadPosRankSum=1.637;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1507,168,0
chrXVI	100419	.	T	C	1439	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.80;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1472,165,0
chrXVI	100522	.	A	G	1050	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=18.10;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1083,120,0
chrXVI	100535	.	G	A	965	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=18.92;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:998,111,0
chrXVI	100723	.	G	T	1484	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.51;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1517,159,0
chrXVI	100759	.	A	G	1690	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=80;Dels=0.00;FS=3.550;HaplotypeScore=8.2975;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.337;QD=21.12;ReadPosRankSum=1.687;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:1,76:80:99:1723,195,0
chrXVI	101698	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.10;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1719,189,0
chrXVI	101890	.	C	T	1677	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.9273;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.41;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1710,186,0
chrXVI	101962	.	T	C	1614	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.9116;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=1.590;QD=22.11;ReadPosRankSum=1.637;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1647,180,0
chrXVI	102331	.	T	C	1802	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=95;Dels=0.00;FS=3.297;HaplotypeScore=7.4379;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-0.774;QD=18.97;ReadPosRankSum=1.658;SB=-1.077e+03	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1835,201,0
chrXVI	102731	.	T	C	958	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.29;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:991,108,0
chrXVI	102867	.	C	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.48;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1526,165,0
chrXVI	102951	.	A	G	1041	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=19.28;SB=-3.700e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1074,120,0
chrXVI	103007	.	A	C	993	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;MQRankSum=-1.732;QD=16.55;ReadPosRankSum=1.674;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1026,117,0
chrXVI	103016	.	A	T	919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;MQRankSum=0.767;QD=14.59;ReadPosRankSum=1.675;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:952,105,0
chrXVI	103137	.	A	G	1227	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.72;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1260,138,0
chrXVI	103486	.	C	A	839	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=19.51;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:872,93,0
chrXVI	103531	.	T	C	874	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=16.49;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:907,99,0
chrXVI	104754	.	T	C	639	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.30;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:75:672,75,0
chrXVI	104784	.	C	T	895	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-1.380e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:928,99,0
chrXVI	104905	.	A	T	664	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.44;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:697,75,0
chrXVI	105285	.	C	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.76;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1853,195,0
chrXVI	105527	.	G	A	3549.01	PASS	AC=2;AF=1.00;AN=2;DP=172;Dels=0.00;FS=0.000;HaplotypeScore=11.0655;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.63;SB=-2.273e+03	GT:AD:DP:GQ:PL	1/1:0,170:172:99:3549,378,0
chrXVI	105791	.	G	C	2177	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.2071;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=17.99;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2210,240,0
chrXVI	105817	.	T	A	2291	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=50.74;MQ0=0;QD=18.04;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2324,246,0
chrXVI	105820	.	C	G	2095	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=16.90;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2128,237,0
chrXVI	105914	.	C	T	2209	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=24.27;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2242,240,0
chrXVI	105960	.	T	C	820	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.872;DP=55;Dels=0.00;FS=11.707;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-2.391;QD=14.91;ReadPosRankSum=2.872;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:3,52:55:96:853,96,0
chrXVI	105966	.	T	C	817	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;DP=55;Dels=0.00;FS=7.308;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;MQRankSum=-1.461;QD=14.85;ReadPosRankSum=2.360;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:2,53:55:93:850,93,0
chrXVI	105969	.	A	T	800	SnpCluster	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=14.55;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:833,90,0
chrXVI	106274	.	C	T	1965	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=22.85;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1998,213,0
chrXVI	106347	.	G	C	1090	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.891;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=49.73;MQ0=0;MQRankSum=-1.089;QD=15.14;ReadPosRankSum=-1.534;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1123,106,0
chrXVI	106351	.	T	C	1116	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.56;MQ0=0;MQRankSum=-0.255;QD=16.41;ReadPosRankSum=1.681;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1149,126,0
chrXVI	106600	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.05;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1138,126,0
chrXVI	106651	.	T	C	1077	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.23;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1110,123,0
chrXVI	106717	.	C	T	927	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=15.45;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:960,102,0
chrXVI	106732	.	T	C	929	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.0399;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=14.52;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:962,108,0
chrXVI	106893	.	T	C	1889	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;DP=92;Dels=0.00;FS=2.717;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.754;QD=20.53;ReadPosRankSum=2.369;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1922,213,0
chrXVI	106938	.	A	G	1578	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=4.942;HaplotypeScore=6.4555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.688;QD=20.23;ReadPosRankSum=1.643;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1611,177,0
chrXVI	107304	.	A	G	2466	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=7.6682;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=24.42;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2499,273,0
chrXVI	107496	.	T	C	972	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=13.89;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,67:70:99:1005,111,0
chrXVI	107512	.	C	T	776	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=12.32;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:87:809,87,0
chrXVI	107538	.	G	A	582	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=7.37;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:66:615,66,0
chrXVI	107548	.	T	C	545	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=7.36;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:63:578,63,0
chrXVI	107736	.	G	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.4204;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=20.59;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1845,201,0
chrXVI	108273	.	C	T	3415.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=8.7495;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.47;SB=-1.833e+03	GT:AD:DP:GQ:PL	1/1:0,150:152:99:3415,369,0
chrXVI	108350	.	T	C	1498	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.7720;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.21;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:78:99:1531,171,0
chrXVI	109579	.	G	A	1410	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.04;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1443,168,0
chrXVI	110811	.	C	A	1574	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1607,171,0
chrXVI	110907	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=20.64;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1478,159,0
chrXVI	110925	.	T	C	1628	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.0924;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=19.15;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1661,186,0
chrXVI	111609	.	T	C	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.559;QD=20.98;ReadPosRankSum=1.676;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1334,147,0
chrXVI	111660	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.00;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1192,129,0
chrXVI	111711	.	A	G	1217	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.63;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1250,138,0
chrXVI	111813	.	C	T	1113	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1146,120,0
chrXVI	112374	.	T	C	1753	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.7542;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=23.07;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1786,195,0
chrXVI	112440	.	C	T	1672	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.8065;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=0.915;QD=18.37;ReadPosRankSum=-0.448;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1705,180,0
chrXVI	113385	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.27;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1249,132,0
chrXVI	113529	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.76;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1436,156,0
chrXVI	113544	.	A	G	1470	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.09;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1503,168,0
chrXVI	113880	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=18.37;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1466,162,0
chrXVI	113910	.	C	T	2039	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=18.71;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2072,228,0
chrXVI	115128	.	T	C	1024	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=-0.513;QD=18.96;ReadPosRankSum=1.668;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1057,114,0
chrXVI	115170	.	G	T	962	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=22.90;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:995,108,0
chrXVI	115252	.	G	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8603;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=17.75;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,52:59:99:1080,114,0
chrXVI	115323	.	C	A	2754	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=25.04;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2787,300,0
chrXVI	116036	.	C	T	1810	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=25.14;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1843,195,0
chrXVI	116082	.	G	A	1236	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.4599;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=18.73;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1269,135,0
chrXVI	116203	.	C	A	2017	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=16.81;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,117:120:99:2050,219,0
chrXVI	116214	.	A	G	1641	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=13.423;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;MQRankSum=0.128;QD=15.48;ReadPosRankSum=2.403;SB=-3.030e+02	GT:AD:DP:GQ:PL	1/1:2,104:106:99:1674,195,0
chrXVI	116308	.	G	C	1456	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=19.16;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1489,165,0
chrXVI	116322	.	T	C	1800	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.1719;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=20.00;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1833,201,0
chrXVI	116448	.	C	T	1366	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=19.24;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1399,153,0
chrXVI	116499	.	T	C	1948	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;DP=103;Dels=0.00;FS=11.751;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;MQRankSum=0.681;QD=18.91;ReadPosRankSum=2.402;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:2,101:103:99:1981,222,0
chrXVI	116689	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.75;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1529,168,0
chrXVI	116904	.	C	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5589;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.64;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1911,201,0
chrXVI	116947	.	T	G	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=88;Dels=0.00;FS=6.284;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.528;QD=18.20;ReadPosRankSum=1.691;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:1,84:88:99:1635,180,0
chrXVI	117148	.	G	A	852	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.93;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:885,99,0
chrXVI	117201	.	G	A	252	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.103;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=15.6531;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;MQRankSum=-0.154;QD=7.41;ReadPosRankSum=-4.359;SB=-1.350e+02	GT:AD:DP:GQ:PL	1/1:13,13:34:30:285,30,0
chrXVI	117204	.	G	A	221.01	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=7.9406;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=0;QD=6.50;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:27:254,27,0
chrXVI	117213	.	G	C	183.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.419;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=12.9223;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.906;QD=4.95;ReadPosRankSum=-3.950;SB=-6.703e+01	GT:AD:DP:GQ:PL	1/1:27,10:37:24:216,24,0
chrXVI	117215	.	A	T	186.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.015;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.37;MQ0=0;MQRankSum=-1.640;QD=4.65;ReadPosRankSum=-3.545;SB=-5.803e+01	GT:AD:DP:GQ:PL	1/1:30,10:40:24:219,24,0
chrXVI	117298	.	A	G	1075	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.359;QD=16.54;ReadPosRankSum=1.679;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1108,123,0
chrXVI	117481	.	C	T	2453	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.6415;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.71;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2486,267,0
chrXVI	117985	.	C	T	2684	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.96;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2717,288,0
chrXVI	118215	.	T	C	2374	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.78;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,107:109:99:2407,267,0
chrXVI	118252	.	T	C	2550	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.6050;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.79;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2583,282,0
chrXVI	119014	.	G	A	2968	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.74;SB=-1.576e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3001,318,0
chrXVI	119106	.	G	A	2301	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=23.01;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2334,246,0
chrXVI	119878	.	G	A	973	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.86;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1006,111,0
chrXVI	120608	.	A	G	2088	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.6576;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.08;SB=-1.117e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2121,231,0
chrXVI	121129	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;MQRankSum=-1.672;QD=17.61;ReadPosRankSum=1.550;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1037,117,0
chrXVI	121136	.	C	T	960	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=17.78;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:993,105,0
chrXVI	121193	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=17.06;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1142,126,0
chrXVI	121288	.	A	C	1667	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=19.61;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1700,186,0
chrXVI	121298	.	T	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=18.09;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1571,180,0
chrXVI	121484	.	A	G	876	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=19.04;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:909,99,0
chrXVI	121557	.	G	A	1173	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=23.00;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1206,126,0
chrXVI	121751	.	G	A	1857	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.5540;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.21;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1890,210,0
chrXVI	121974	.	A	G	1907	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=1.273;QD=19.07;ReadPosRankSum=1.697;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:1,97:100:99:1940,216,0
chrXVI	122105	.	A	G	1233	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.9155;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=22.02;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1266,138,0
chrXVI	122198	.	T	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.21;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1448,156,0
chrXVI	122473	.	T	C	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;DP=78;Dels=0.00;FS=5.973;HaplotypeScore=4.5189;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=0.520;QD=20.24;ReadPosRankSum=2.832;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:3,75:78:99:1612,177,0
chrXVI	122553	.	T	C	1756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;MQRankSum=-0.724;QD=22.23;ReadPosRankSum=1.688;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1789,198,0
chrXVI	122567	.	A	G	1733	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.75;MQ0=0;QD=21.66;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1766,198,0
chrXVI	122768	.	G	A	2355	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.7531;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.64;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2388,261,0
chrXVI	122948	.	A	G	1169	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.16;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1202,135,0
chrXVI	123092	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.41;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1441,150,0
chrXVI	123188	.	G	A	1751	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1992;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=21.62;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1784,195,0
chrXVI	123251	.	C	T	1976	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.25;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2009,213,0
chrXVI	123366	.	G	A	1031	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=21.94;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1064,114,0
chrXVI	123414	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.45;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1485,165,0
chrXVI	123457	.	C	T	1654	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=20.42;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1687,183,0
chrXVI	123705	.	T	C	1120	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=61;Dels=0.00;FS=3.632;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.173;QD=18.36;ReadPosRankSum=1.675;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1153,126,0
chrXVI	123818	.	T	C	850	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=46;Dels=0.00;FS=5.071;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.500;QD=18.48;ReadPosRankSum=1.655;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:1,44:46:99:883,99,0
chrXVI	124031	.	C	T	1190	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.83;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1223,132,0
chrXVI	124049	.	G	A	1098	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=17.71;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1131,120,0
chrXVI	124058	.	T	C	1000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;MQRankSum=-1.677;QD=15.87;ReadPosRankSum=1.677;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1033,114,0
chrXVI	124079	.	A	T	729	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=0;QD=11.95;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:81:762,81,0
chrXVI	124091	.	G	A	725	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.73;MQ0=0;QD=11.33;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:81:758,81,0
chrXVI	124217	.	A	G	1401	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.9890;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.75;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1434,159,0
chrXVI	124241	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=20.49;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1037,114,0
chrXVI	124331	.	G	A	1472	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=18.63;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1505,165,0
chrXVI	124436	.	T	C	1458	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=22.09;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1491,168,0
chrXVI	124589	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=21.30;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1375,147,0
chrXVI	124718	.	T	C	1337	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.28;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1370,150,0
chrXVI	124850	.	T	C	1283	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=18.87;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1316,144,0
chrXVI	125264	.	G	A	1944	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0916;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;QD=18.34;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:1977,219,0
chrXVI	125270	.	C	T	1974	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=19.17;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2007,216,0
chrXVI	125654	.	G	A	2572	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.80;SB=-1.414e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2605,291,0
chrXVI	125867	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.5390;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.39;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2065,225,0
chrXVI	125957	.	C	T	1420	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=18.93;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1453,159,0
chrXVI	126095	.	T	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.23;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,80:83:99:1712,186,0
chrXVI	126544	.	C	T	144.06	filter	AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,16:16:21:177,21,0
chrXVI	126582	.	A	G	1033	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.60;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1066,117,0
chrXVI	126808	.	C	T	877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=0.730;QD=23.08;ReadPosRankSum=-0.547;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:1,37:38:79:910,79,0
chrXVI	126838	.	A	G	719	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.47;SB=-1.310e+02	GT:AD:DP:GQ:PL	1/1:0,31:32:87:752,87,0
chrXVI	127009	.	C	A	1495	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=20.76;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1528,162,0
chrXVI	132625	.	A	G	519	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=20.76;SB=-1.610e+02	GT:AD:DP:GQ:PL	1/1:0,24:25:63:552,63,0
chrXVI	132681	.	G	T	603	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=14.36;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:66:636,66,0
chrXVI	132683	.	C	T	563	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=14.07;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:63:596,63,0
chrXVI	132693	.	C	T	631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.506;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.33;MQ0=0;MQRankSum=0.904;QD=13.72;ReadPosRankSum=1.657;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:51:664,51,0
chrXVI	132779	.	C	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.92;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1611,177,0
chrXVI	132838	.	A	C	1393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=4.346;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;MQRankSum=0.306;QD=20.49;ReadPosRankSum=1.528;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1426,159,0
chrXVI	132855	.	T	C	1100	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=20.37;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1133,123,0
chrXVI	132909	.	A	G	486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;MQRankSum=0.222;QD=12.15;ReadPosRankSum=1.644;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:1,38:40:57:519,57,0
chrXVI	132915	.	A	G	491	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=11.42;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,38:43:57:524,57,0
chrXVI	133186	.	G	A	1255	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=18.73;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1288,138,0
chrXVI	133388	.	C	G	1664	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.4913;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=17.89;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1697,192,0
chrXVI	134182	.	G	A	1407	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=24.68;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1440,153,0
chrXVI	135326	.	A	G	1589	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.37;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1622,174,0
chrXVI	135569	.	T	C	2480	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=10.1981;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=20.84;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,116:119:99:2513,273,0
chrXVI	135681	.	A	T	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=62.5956;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;MQRankSum=-0.796;QD=18.70;ReadPosRankSum=2.325;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1529,162,0
chrXVI	135712	.	T	C	1287	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=17.87;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1320,144,0
chrXVI	135771	.	G	A	1801	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=10.8321;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=20.01;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1834,195,0
chrXVI	135954	.	G	A	562	filter	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.25;MQ0=3;QD=13.38;SB=-6.524e-03	GT:AD:DP:GQ:PL	1/1:1,40:42:63:595,63,0
chrXVI	135960	.	T	C	631	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=0;QD=16.18;SB=-2.601e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:72:664,72,0
chrXVI	136128	.	T	C	2219	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.09;MQ0=0;QD=24.93;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:2252,249,0
chrXVI	136179	.	G	A	2090	filter	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=29.71;MQ0=5;QD=21.33;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:3,94:98:99:2123,225,0
chrXVI	136359	.	T	C	287	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.53;MQ0=13;QD=11.04;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:7,18:26:36:320,36,0
chrXVI	136392	.	T	C	438	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=5;QD=15.64;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:4,24:28:51:471,51,0
chrXVI	136613	.	T	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.94;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1226,135,0
chrXVI	136628	.	T	C	885	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.70;MQ0=0;QD=19.67;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:918,102,0
chrXVI	136881	.	T	C	1465	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=20.07;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1498,168,0
chrXVI	136917	.	C	T	1288	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=21.11;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1321,144,0
chrXVI	136950	.	C	T	1841	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.60;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1874,198,0
chrXVI	137386	.	A	G	1488	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=19.32;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1521,171,0
chrXVI	137442	.	T	C	1103	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=56.9494;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;MQRankSum=-0.687;QD=17.51;ReadPosRankSum=1.567;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1136,126,0
chrXVI	137748	.	T	C	2012	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;QD=24.54;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2045,225,0
chrXVI	138435	.	G	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=26.37;SB=-6.301e+01	GT:AD:DP:GQ:PL	1/1:0,45:46:99:1246,129,0
chrXVI	138671	.	T	C	2713	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.19;SB=-1.429e+03	GT:AD:DP:GQ:PL	1/1:1,114:117:99:2746,300,0
chrXVI	139546	.	C	A	560	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6544;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;MQRankSum=0.472;QD=7.27;ReadPosRankSum=1.642;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:78:593,78,0
chrXVI	139547	.	T	A	404	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6544;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-1.185;QD=5.32;ReadPosRankSum=1.687;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:57:437,57,0
chrXVI	139548	.	A	G	404	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6544;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=-1.687;QD=5.32;ReadPosRankSum=1.687;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:57:437,57,0
chrXVI	139660	.	C	T	995	filter	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.10;MQ0=0;QD=26.18;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1028,108,0
chrXVI	139685	.	G	T	1123	filter	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=61.67;MQ0=0;QD=23.40;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1156,123,0
chrXVI	139893	.	T	A	689	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.97;SB=-1.390e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:78:722,78,0
chrXVI	140178	.	A	G	521	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.231;QD=16.81;ReadPosRankSum=1.502;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:1,29:31:63:554,63,0
chrXVI	140372	.	A	G	1362	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.97;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1395,153,0
chrXVI	140784	.	G	A	1620	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.14;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1653,177,0
chrXVI	141211	.	C	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.23;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1880,198,0
chrXVI	141213	.	T	G	1760	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=4.918;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=0.500;QD=19.56;ReadPosRankSum=1.617;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1793,198,0
chrXVI	141255	.	G	A	1036	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=17.56;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1069,120,0
chrXVI	141645	.	G	C	884	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=20.56;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:917,102,0
chrXVI	141675	.	G	A	1212	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.26;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1245,132,0
chrXVI	141900	.	C	T	909	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=19.34;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:942,99,0
chrXVI	141903	.	A	C	890	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.71;MQ0=0;QD=17.80;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:923,102,0
chrXVI	142308	.	C	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.92;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1436,159,0
chrXVI	142384	.	A	T	1215	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4805;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.92;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1248,132,0
chrXVI	142530	.	C	T	2200	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=20.00;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2233,234,0
chrXVI	142545	.	A	T	1878	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.3460;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.98;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1911,201,0
chrXVI	142584	.	C	T	1441	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=19.21;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1474,159,0
chrXVI	143242	.	A	G	1438	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.1696;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.84;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1471,162,0
chrXVI	143261	.	C	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=18.70;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1548,162,0
chrXVI	143341	.	C	G	1463	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.4831;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=16.44;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,86:89:99:1496,165,0
chrXVI	143342	.	T	A	1542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.921;DP=89;Dels=0.00;FS=9.953;HaplotypeScore=4.6458;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;MQRankSum=-0.284;QD=17.33;ReadPosRankSum=2.921;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:3,86:89:99:1575,168,0
chrXVI	143447	.	A	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5459;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.35;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1821,195,0
chrXVI	143469	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=22.15;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1362,150,0
chrXVI	143569	.	C	G	1841	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.7933;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=22.18;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1874,204,0
chrXVI	143626	.	A	C	1632	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.1015;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=20.15;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1665,183,0
chrXVI	143745	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.4673;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.482;QD=20.58;ReadPosRankSum=2.373;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1350,150,0
chrXVI	143773	.	T	C	1387	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=23.91;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1420,156,0
chrXVI	143841	.	G	A	1131	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.88;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1164,123,0
chrXVI	143864	.	G	A	1231	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.80;MQ0=0;QD=17.10;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1264,135,0
chrXVI	143870	.	C	T	1211	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=16.36;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1244,135,0
chrXVI	143885	.	C	T	1455	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.37;MQ0=0;QD=17.74;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1488,159,0
chrXVI	143935	.	G	A	1164	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.1010;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=14.02;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1197,129,0
chrXVI	143952	.	G	A	1306	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=19.21;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1339,144,0
chrXVI	144102	.	C	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=24.88;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1725,183,0
chrXVI	144259	.	T	C	1782	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=23.14;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1815,201,0
chrXVI	144415	.	C	T	1592	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9216;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=20.95;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1625,174,0
chrXVI	144429	.	G	A	1689	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.0463;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;QD=19.87;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1722,183,0
chrXVI	144486	.	T	C	2195	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=106;Dels=0.00;FS=6.117;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;MQRankSum=-0.664;QD=20.71;ReadPosRankSum=2.895;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:3,103:106:99:2228,246,0
chrXVI	144525	.	A	G	2470	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.22;SB=-1.268e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2503,285,0
chrXVI	144595	.	G	A	2459	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.42;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2492,273,0
chrXVI	144737	.	T	C	745	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=12.42;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:87:778,87,0
chrXVI	144866	.	C	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=17.07;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1586,171,0
chrXVI	145101	.	T	C	1845	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.71;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1878,207,0
chrXVI	145109	.	A	G	1622	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.53;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1655,183,0
chrXVI	145227	.	A	G	1830	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.73;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1863,201,0
chrXVI	145251	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.54;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1563,171,0
chrXVI	145329	.	A	G	1694	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;MQRankSum=1.219;QD=20.91;ReadPosRankSum=1.689;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1727,189,0
chrXVI	145358	.	A	T	1766	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=20.53;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1799,192,0
chrXVI	145367	.	T	G	1641	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.01;FS=0.000;HaplotypeScore=3.5405;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=19.54;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1674,180,0
chrXVI	145411	.	A	T	1542	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=20.03;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1575,168,0
chrXVI	145599	.	C	G	1651	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.31;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1684,186,0
chrXVI	145717	.	G	C	2458	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=23.86;SB=-1.148e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2491,276,0
chrXVI	145885	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=21.15;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1196,135,0
chrXVI	145943	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;MQRankSum=1.325;QD=23.00;ReadPosRankSum=1.681;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1597,174,0
chrXVI	146032	.	T	C	2031	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=5.144;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.469;QD=23.89;ReadPosRankSum=1.651;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2064,222,0
chrXVI	146064	.	C	T	1963	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.4432;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=21.81;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1996,219,0
chrXVI	146345	.	T	C	1026	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.80;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1059,117,0
chrXVI	146388	.	C	T	1329	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.08;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1362,144,0
chrXVI	146533	.	A	G	2002	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.41;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2035,219,0
chrXVI	146758	.	T	G	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=5.2284;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;MQRankSum=1.621;QD=22.21;ReadPosRankSum=1.173;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1410,156,0
chrXVI	146933	.	C	T	2062	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=23.98;SB=-1.062e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2095,225,0
chrXVI	146964	.	G	A	1700	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=22.67;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1733,183,0
chrXVI	147195	.	T	C	1631	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=17.73;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1664,180,0
chrXVI	147209	.	C	T	1469	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.33;MQ0=0;QD=15.30;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1502,165,0
chrXVI	147215	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=16.34;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1618,174,0
chrXVI	147254	.	T	C	1460	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=16.98;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1493,162,0
chrXVI	147305	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.17;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,61:64:99:1388,147,0
chrXVI	147862	.	A	G	1172	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.21;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1205,132,0
chrXVI	147934	.	C	T	1073	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.04;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1106,120,0
chrXVI	149427	.	T	G	1396	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=69;Dels=0.00;FS=3.074;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=-1.531;QD=20.23;ReadPosRankSum=1.682;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1429,159,0
chrXVI	149499	.	A	T	1147	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.50;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1180,129,0
chrXVI	149586	.	C	T	1991	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.5916;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.74;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2024,216,0
chrXVI	149778	.	A	G	1313	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.52;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1346,153,0
chrXVI	150165	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.18;SB=-1.116e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1896,207,0
chrXVI	150219	.	C	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.64;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1767,189,0
chrXVI	150295	.	C	T	1909	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.28;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1942,204,0
chrXVI	150500	.	T	C	2111	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.95;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,89:92:99:2144,237,0
chrXVI	151045	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=19.19;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1722,192,0
chrXVI	151173	.	G	A	1285	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.7308;MLEAC=2;MLEAF=1.00;MQ=55.90;MQ0=0;QD=16.27;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1318,141,0
chrXVI	151184	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=15.91;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1210,132,0
chrXVI	151355	.	A	G	1512	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=20.16;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1545,171,0
chrXVI	151370	.	A	G	1870	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4662;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.08;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1903,216,0
chrXVI	151590	.	A	C	359	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=12.38;SB=-3.010e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:42:392,42,0
chrXVI	151591	.	G	T	396	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=13.20;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:45:429,45,0
chrXVI	151965	.	T	C	1104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.663;QD=22.08;ReadPosRankSum=1.663;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1137,129,0
chrXVI	152037	.	A	G	1128	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.12;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1161,132,0
chrXVI	152392	.	A	G	1129	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=60;Dels=0.00;FS=7.361;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;MQRankSum=-1.215;QD=18.82;ReadPosRankSum=2.286;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1162,132,0
chrXVI	152472	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.19;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1389,153,0
chrXVI	153252	.	A	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1201;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=17.67;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1429,159,0
chrXVI	153430	.	A	G	1380	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.56;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1413,156,0
chrXVI	153797	.	T	C	2567	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.287;QD=23.55;ReadPosRankSum=1.700;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2600,288,0
chrXVI	154089	.	C	T	1738	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.20;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1771,189,0
chrXVI	154641	.	A	G	937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.840;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=1.205;QD=20.37;ReadPosRankSum=1.657;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:99:970,108,0
chrXVI	155088	.	T	G	2732	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=8.1003;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=23.55;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2765,309,0
chrXVI	155186	.	A	T	1251	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.20;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1284,138,0
chrXVI	157315	.	T	C	871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=5.850;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.178;QD=17.08;ReadPosRankSum=1.663;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:99:904,99,0
chrXVI	162392	.	A	T	173.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.456;QD=9.13;ReadPosRankSum=-1.369;SB=-9.752e+01	GT:AD:DP:GQ:PL	1/1:1,18:19:4:204,4,0
chrXVI	162438	.	A	T	811	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-3.120e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:90:844,90,0
chrXVI	163733	.	G	T	2533	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.59;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,143:144:99:2566,270,0
chrXVI	163842	.	G	A	1579	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.495;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.115;QD=21.05;ReadPosRankSum=1.542;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1612,171,0
chrXVI	165213	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=20.33;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1314,150,0
chrXVI	165244	.	T	C	1280	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=57;Dels=0.00;FS=3.865;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;MQRankSum=-1.732;QD=22.46;ReadPosRankSum=1.670;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1313,144,0
chrXVI	167227	.	T	C	1616	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.99;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1649,183,0
chrXVI	167661	.	A	C	2238	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.222;HaplotypeScore=7.4227;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;MQRankSum=-0.214;QD=21.11;ReadPosRankSum=1.699;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2271,252,0
chrXVI	167905	.	C	G	1501	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.8526;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=21.75;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1534,171,0
chrXVI	167998	.	G	A	1152	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=3.9381;MLEAC=2;MLEAF=1.00;MQ=35.93;MQ0=0;QD=17.72;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1185,129,0
chrXVI	167999	.	A	G	1116	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=64;Dels=0.00;FS=3.590;HaplotypeScore=3.9381;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;MQRankSum=-0.866;QD=17.44;ReadPosRankSum=-0.433;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1149,129,0
chrXVI	168007	.	G	T	1206	SnpCluster	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.5042;MLEAC=2;MLEAF=1.00;MQ=33.96;MQ0=0;QD=15.87;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1239,138,0
chrXVI	168021	.	T	C	1014	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=13.89;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1047,114,0
chrXVI	168022	.	C	T	986	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=30.02;MQ0=0;QD=13.51;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1019,114,0
chrXVI	168031	.	C	T	864	SnpCluster	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.57;MQ0=0;QD=10.54;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:897,99,0
chrXVI	168037	.	T	C	924	SnpCluster	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.98;MQ0=0;QD=10.74;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:957,102,0
chrXVI	168040	.	T	C	895	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=4.160;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.51;MQ0=0;MQRankSum=-1.692;QD=10.41;ReadPosRankSum=1.692;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:928,102,0
chrXVI	168073	.	T	G	887	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=8.87;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:920,102,0
chrXVI	168076	.	A	G	869	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=101;Dels=0.00;FS=3.010;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.28;MQ0=0;MQRankSum=-0.529;QD=8.60;ReadPosRankSum=2.401;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:2,98:101:99:902,99,0
chrXVI	168354	.	T	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=21.71;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1596,168,0
chrXVI	168374	.	C	T	1468	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.94;MQ0=0;QD=22.94;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1501,156,0
chrXVI	168450	.	C	T	1729	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1100;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=20.83;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1762,189,0
chrXVI	168697	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.2020;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=21.98;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1374,153,0
chrXVI	169035	.	A	G	915	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.47;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:948,105,0
chrXVI	169198	.	T	G	1414	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=21.42;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1447,159,0
chrXVI	169475	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.15;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1408,150,0
chrXVI	169613	.	C	T	338	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.23;MQ0=0;QD=10.90;SB=-2.250e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:39:371,39,0
chrXVI	169623	.	A	G	463	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.77;MQ0=0;QD=13.23;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:54:496,54,0
chrXVI	169633	.	G	C	605	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=15.92;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:638,69,0
chrXVI	169651	.	A	G	594	SnpCluster	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=15.63;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:627,69,0
chrXVI	169653	.	A	G	600	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=15.38;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:633,69,0
chrXVI	169654	.	A	T	618	SnpCluster	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=15.85;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:69:651,69,0
chrXVI	169696	.	G	C	1227	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=8.0517;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=17.78;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1260,144,0
chrXVI	170101	.	G	A	1741	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.77;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1774,189,0
chrXVI	170104	.	T	G	1666	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=17.35;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,95:96:99:1699,189,0
chrXVI	170172	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=1.444;QD=16.33;ReadPosRankSum=1.684;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1209,132,0
chrXVI	170630	.	T	C	833	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=18.93;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:866,99,0
chrXVI	170647	.	C	T	986	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.54;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1019,108,0
chrXVI	170693	.	T	C	903	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.37;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:936,102,0
chrXVI	170718	.	A	G	896	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=15.45;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:929,102,0
chrXVI	170759	.	A	G	1247	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.44;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1280,141,0
chrXVI	170856	.	G	A	1829	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.39;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1862,198,0
chrXVI	170972	.	C	G	1100	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.57;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1133,126,0
chrXVI	171075	.	T	C	803	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.46;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:93:836,93,0
chrXVI	171270	.	A	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.05;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1233,132,0
chrXVI	171708	.	T	C	1648	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=22.89;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1681,183,0
chrXVI	171729	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.18;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1643,183,0
chrXVI	171822	.	G	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8092;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.86;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1324,144,0
chrXVI	172109	.	C	T	2323	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=26.10;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2356,249,0
chrXVI	172192	.	A	G	1861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=1.528;QD=21.89;ReadPosRankSum=1.528;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1894,207,0
chrXVI	172402	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.646;DP=97;Dels=0.00;FS=4.751;HaplotypeScore=9.6087;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.073;QD=16.03;ReadPosRankSum=3.744;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:5,92:97:99:1588,174,0
chrXVI	172453	.	T	C	1484	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=19.03;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1517,165,0
chrXVI	172579	.	A	G	820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.025;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=1.945;QD=16.73;ReadPosRankSum=1.844;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:2,47:49:93:853,93,0
chrXVI	172786	.	T	C	772	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.95;SB=-4.420e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:805,90,0
chrXVI	172925	.	G	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.93;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1349,153,0
chrXVI	173054	.	A	T	1549	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.82;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1582,171,0
chrXVI	173330	.	C	T	2096	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.54;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2129,234,0
chrXVI	173535	.	T	G	1736	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.17;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1769,195,0
chrXVI	173706	.	C	T	2722	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.09;SB=-1.304e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2755,297,0
chrXVI	173979	.	C	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.17;MQ0=0;QD=21.36;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1849,198,0
chrXVI	173981	.	T	C	1692	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.18;MQ0=0;QD=20.39;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1725,192,0
chrXVI	174059	.	G	A	2350	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=6.3417;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;QD=20.43;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2383,261,0
chrXVI	174069	.	T	C	2448	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=5.7110;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=23.09;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,102:106:99:2481,270,0
chrXVI	174782	.	T	C	2199	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=6.6912;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=20.55;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,106:107:99:2232,249,0
chrXVI	175312	.	G	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=23.52;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1891,201,0
chrXVI	175582	.	A	G	2139	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=23.00;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2172,237,0
chrXVI	175606	.	A	G	2205	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=104;Dels=0.00;FS=4.042;HaplotypeScore=3.5104;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=1.366;QD=21.20;ReadPosRankSum=1.632;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2238,246,0
chrXVI	175957	.	C	T	3677.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=24.84;SB=-1.645e+03	GT:AD:DP:GQ:PL	1/1:0,146:148:99:3677,390,0
chrXVI	176029	.	A	G	2960	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.501;QD=21.76;ReadPosRankSum=1.706;SB=-1.296e+03	GT:AD:DP:GQ:PL	1/1:2,134:136:99:2993,321,0
chrXVI	176056	.	C	T	2628	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.0695;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.06;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2661,294,0
chrXVI	176099	.	G	A	2308	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.4752;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.57;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2341,255,0
chrXVI	176327	.	G	A	1521	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.50;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1554,162,0
chrXVI	177590	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.53;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1881,198,0
chrXVI	177875	.	A	G	2044	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=3.061;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.493;QD=23.49;ReadPosRankSum=1.692;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2077,228,0
chrXVI	178167	.	T	C	1601	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.84;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1634,180,0
chrXVI	178519	.	G	A	1909	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.73;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1942,210,0
chrXVI	178571	.	A	G	2089	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=25.79;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:2122,228,0
chrXVI	178695	.	C	G	1645	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1678,189,0
chrXVI	179066	.	G	A	1526	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.82;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1559,168,0
chrXVI	179572	.	G	A	1851	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.52;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1884,204,0
chrXVI	180092	.	C	A	881	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.49;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:96:914,96,0
chrXVI	180392	.	A	G	927	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=19.31;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:960,105,0
chrXVI	180404	.	T	C	915	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;MQRankSum=1.379;QD=18.67;ReadPosRankSum=-0.601;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:948,108,0
chrXVI	180436	.	A	G	926	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=4.3549;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=1.372;QD=19.29;ReadPosRankSum=1.660;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:959,105,0
chrXVI	180828	.	A	G	1340	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=21.27;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1373,156,0
chrXVI	181037	.	C	G	2528	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.54;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2561,276,0
chrXVI	181857	.	T	C	1850	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=21.26;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1883,204,0
chrXVI	182020	.	C	T	1488	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.00;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1521,159,0
chrXVI	182053	.	G	A	1614	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.52;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1647,177,0
chrXVI	182191	.	A	G	1887	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=9.5539;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.30;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1920,210,0
chrXVI	182353	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.0995;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=25.66;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:2137,228,0
chrXVI	182715	.	G	A	1338	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.33;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1371,144,0
chrXVI	182784	.	G	A	1106	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.27;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1139,120,0
chrXVI	182943	.	C	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.59;SB=-3.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1091,120,0
chrXVI	183101	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.176;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;MQRankSum=0.292;QD=23.02;ReadPosRankSum=3.299;SB=-1.890e+02	GT:AD:DP:GQ:PL	1/1:4,54:58:99:1368,147,0
chrXVI	183385	.	A	G	1441	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.17;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1474,165,0
chrXVI	183470	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.0789;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.76;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1403,147,0
chrXVI	183482	.	A	G	1286	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;QD=20.74;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1319,144,0
chrXVI	183510	.	G	A	1079	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.58;SB=-2.810e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1112,117,0
chrXVI	184059	.	T	C	1769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.518;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.2883;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=0.364;QD=21.84;ReadPosRankSum=1.689;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1802,181,0
chrXVI	184214	.	G	T	1300	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.41;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1333,141,0
chrXVI	184392	.	T	C	3070	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=8.0408;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.352;QD=23.08;ReadPosRankSum=1.654;SB=-1.582e+03	GT:AD:DP:GQ:PL	1/1:1,132:133:99:3103,336,0
chrXVI	184681	.	A	T	3045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.922;DP=146;Dels=0.00;FS=5.686;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=0.681;QD=20.86;ReadPosRankSum=2.922;SB=-1.512e+03	GT:AD:DP:GQ:PL	1/1:3,143:146:99:3078,339,0
chrXVI	185261	.	A	G	2918	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=126;Dels=0.00;FS=4.087;HaplotypeScore=7.2716;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.324;QD=23.16;ReadPosRankSum=1.704;SB=-1.248e+03	GT:AD:DP:GQ:PL	1/1:1,122:126:99:2951,324,0
chrXVI	185392	.	T	C	1633	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=397.5999;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=1.658;QD=17.37;ReadPosRankSum=1.437;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1666,183,0
chrXVI	185773	.	T	C	2221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;DP=104;Dels=0.00;FS=3.358;HaplotypeScore=11.8624;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=-1.099;QD=21.36;ReadPosRankSum=1.699;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:1,103:104:99:2254,249,0
chrXVI	186412	.	G	A	1847	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.2815;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.99;SB=-1.124e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1880,201,0
chrXVI	186844	.	A	G	1457	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.99;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1490,165,0
chrXVI	186924	.	C	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=21.60;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1394,147,0
chrXVI	187240	.	T	C	1701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.561;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.962;QD=21.00;ReadPosRankSum=1.689;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1734,195,0
chrXVI	187312	.	G	A	1045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=4.260;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=44.35;MQ0=0;MQRankSum=1.299;QD=14.32;ReadPosRankSum=0.818;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1078,126,0
chrXVI	187324	.	T	A	585	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.892;DP=81;Dels=0.00;FS=4.635;HaplotypeScore=81.6297;MLEAC=2;MLEAF=1.00;MQ=38.04;MQ0=0;MQRankSum=0.425;QD=7.22;ReadPosRankSum=-6.020;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:30,51:81:66:618,66,0
chrXVI	187327	.	T	A	617	SnpCluster	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=81.7742;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;QD=7.35;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:72:650,72,0
chrXVI	187330	.	T	A	585	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=90;Dels=0.00;FS=1.902;HaplotypeScore=85.0787;MLEAC=2;MLEAF=1.00;MQ=40.02;MQ0=0;MQRankSum=-3.038;QD=6.50;ReadPosRankSum=3.074;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:5,84:90:69:618,69,0
chrXVI	187333	.	T	A	222.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;DP=87;Dels=0.00;FS=2.179;HaplotypeScore=67.0209;MLEAC=1;MLEAF=0.500;MQ=39.95;MQ0=0;MQRankSum=0.055;QD=2.55;ReadPosRankSum=-3.213;SB=-1.420e+02	GT:AD:DP:GQ:PL	0/1:67,20:87:99:252,0,408
chrXVI	187673	.	A	T	1820	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.794;DP=94;Dels=0.00;FS=5.732;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=-1.359;QD=19.36;ReadPosRankSum=2.816;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:3,91:94:99:1853,198,0
chrXVI	187831	.	T	C	2698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=120;Dels=0.00;FS=3.237;HaplotypeScore=4.9447;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=0.939;QD=22.48;ReadPosRankSum=1.703;SB=-1.477e+03	GT:AD:DP:GQ:PL	1/1:1,117:120:99:2731,303,0
chrXVI	188250	.	A	C	1882	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9012;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.24;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,90:93:99:1915,216,0
chrXVI	188803	.	G	A	498	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.03;FS=0.000;HaplotypeScore=4.2443;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=15.09;SB=-1.950e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:57:531,57,0
chrXVI	188889	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.724;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.997;QD=19.55;ReadPosRankSum=1.680;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1323,147,0
chrXVI	189526	.	C	G	951	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.68;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:984,108,0
chrXVI	189738	.	G	A	641	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.42;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:72:674,72,0
chrXVI	189850	.	C	T	1948	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=7.5926;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.92;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1981,210,0
chrXVI	190020	.	A	G	1451	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.73;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1484,162,0
chrXVI	190072	.	G	A	1584	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=23.64;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1617,177,0
chrXVI	190367	.	A	T	1393	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.19;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1426,153,0
chrXVI	190515	.	A	G	951	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.144;QD=17.94;ReadPosRankSum=1.602;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:984,108,0
chrXVI	190713	.	T	C	1875	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.3964;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.521;QD=22.87;ReadPosRankSum=1.605;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1908,213,0
chrXVI	190807	.	G	C	2647	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.1715;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=22.62;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,112:117:99:2680,288,0
chrXVI	190868	.	A	G	2508	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=105;Dels=0.00;FS=5.546;HaplotypeScore=7.1851;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.899;QD=23.89;ReadPosRankSum=1.699;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:1,103:105:99:2541,279,0
chrXVI	191121	.	C	T	2664	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=22.39;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,118:119:99:2697,291,0
chrXVI	191167	.	T	G	1427	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=20.39;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1460,162,0
chrXVI	191183	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=19.06;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1310,147,0
chrXVI	191256	.	C	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=19.69;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1569,165,0
chrXVI	191290	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=19.46;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1648,174,0
chrXVI	191540	.	T	C	789	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=21.92;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:822,87,0
chrXVI	191918	.	T	C	913	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.23;SB=-3.450e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:946,105,0
chrXVI	191944	.	C	T	1033	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.66;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1066,117,0
chrXVI	192044	.	A	G	1867	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=20.74;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1900,210,0
chrXVI	192260	.	T	C	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;MQRankSum=1.535;QD=22.14;ReadPosRankSum=1.693;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:2,87:91:99:2048,222,0
chrXVI	192986	.	A	G	36.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=13.2996;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;MQRankSum=-1.261;QD=1.23;ReadPosRankSum=-0.158;SB=-9.601e-01	GT:AD:DP:GQ:PL	1/1:2,26:30:9:69,9,0
chrXVI	193082	.	C	T	1584	filter	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.55;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1617,174,0
chrXVI	193187	.	C	T	2133	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=26.33;SB=-2.020e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2166,231,0
chrXVI	193455	.	C	T	3430.01	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=23.49;SB=-1.548e+03	GT:AD:DP:GQ:PL	1/1:0,144:146:99:3430,363,0
chrXVI	193515	.	G	A	3172	PASS	AC=2;AF=1.00;AN=2;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.3110;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.73;SB=-1.789e+03	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3205,339,0
chrXVI	193574	.	T	C	3310.01	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=22.36;SB=-1.632e+03	GT:AD:DP:GQ:PL	1/1:0,147:148:99:3310,357,0
chrXVI	193672	.	G	A	2199	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8012;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=24.16;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2232,246,0
chrXVI	193737	.	G	C	1265	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=19.17;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1298,144,0
chrXVI	193773	.	A	G	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-1.479;QD=17.07;ReadPosRankSum=1.690;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1433,156,0
chrXVI	193935	.	A	G	1583.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;DP=122;Dels=0.00;FS=2.733;HaplotypeScore=5.5642;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=-0.341;QD=12.98;ReadPosRankSum=2.211;SB=-7.810e+02	GT:AD:DP:GQ:PL	0/1:31,91:122:99:1613,0,429
chrXVI	193968	.	A	C	1442	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=46.65;MQ0=0;QD=13.60;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1475,168,0
chrXVI	193987	.	C	T	56.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.727;DP=92;Dels=0.00;FS=4.047;HaplotypeScore=5.1357;MLEAC=1;MLEAF=0.500;MQ=42.46;MQ0=0;MQRankSum=-4.569;QD=0.61;ReadPosRankSum=1.200;SB=-8.601e+01	GT:AD:DP:GQ:PL	0/1:54,37:92:86:86,0,877
chrXVI	194019	.	A	G	125.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.304;DP=86;Dels=0.00;FS=26.791;HaplotypeScore=6.9745;MLEAC=1;MLEAF=0.500;MQ=43.20;MQ0=0;MQRankSum=-3.420;QD=1.45;ReadPosRankSum=-0.022;SB=-7.301e+01	GT:AD:DP:GQ:PL	0/1:49,36:86:99:155,0,705
chrXVI	194050	.	C	T	187.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;DP=79;Dels=0.00;FS=5.021;HaplotypeScore=2.3660;MLEAC=1;MLEAF=0.500;MQ=50.26;MQ0=0;MQRankSum=-1.380;QD=2.37;ReadPosRankSum=1.082;SB=-1.870e+02	GT:AD:DP:GQ:PL	0/1:55,24:79:99:217,0,843
chrXVI	194061	.	G	A	153.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.539;DP=78;Dels=0.00;FS=7.033;HaplotypeScore=9.2973;MLEAC=1;MLEAF=0.500;MQ=52.33;MQ0=0;MQRankSum=-3.145;QD=1.96;ReadPosRankSum=0.811;SB=-1.380e+02	GT:AD:DP:GQ:PL	0/1:55,23:78:99:183,0,983
chrXVI	194152	.	C	T	1875	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.44;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1908,198,0
chrXVI	194758	.	G	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3196;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=20.13;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1865,207,0
chrXVI	194794	.	A	G	1606	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=18.46;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1639,183,0
chrXVI	194806	.	A	G	1360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;MQRankSum=-0.140;QD=17.89;ReadPosRankSum=1.639;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:1,73:76:99:1393,156,0
chrXVI	194832	.	T	C	1725	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.30;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1758,195,0
chrXVI	195093	.	T	C	1213	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5411;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=16.85;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1246,138,0
chrXVI	195109	.	G	A	980	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=67;Dels=0.00;FS=8.358;HaplotypeScore=2.8208;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;MQRankSum=0.139;QD=14.63;ReadPosRankSum=0.976;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:3,61:67:99:1013,108,0
chrXVI	195117	.	C	T	926	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.0321;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=13.62;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:959,102,0
chrXVI	195142	.	G	A	947	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.66;MQ0=0;QD=13.15;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:980,105,0
chrXVI	195253	.	A	G	2089	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=21.99;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2122,231,0
chrXVI	195558	.	G	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.9025;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=19.00;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,110:113:99:2180,234,0
chrXVI	195564	.	C	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=4.9373;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=16.13;SB=-1.280e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2065,231,0
chrXVI	195693	.	A	G	1858	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.39;MQ0=0;QD=23.22;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1891,213,0
chrXVI	195862	.	C	G	2069	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=22.25;SB=-1.159e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:2102,231,0
chrXVI	195879	.	C	T	2000	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.4007;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.28;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2033,222,0
chrXVI	196496	.	C	T	2330	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.05;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2363,252,0
chrXVI	196580	.	A	G	868	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.73;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:901,99,0
chrXVI	196610	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.090;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.480;QD=23.22;ReadPosRankSum=1.669;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1310,144,0
chrXVI	196727	.	A	T	2529	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.939;QD=21.25;ReadPosRankSum=1.644;SB=-1.483e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2562,282,0
chrXVI	197348	.	T	A	1662	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.77;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1695,186,0
chrXVI	197435	.	C	T	1433	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.77;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1466,156,0
chrXVI	197471	.	A	G	1071	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=16.48;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1104,120,0
chrXVI	197495	.	A	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.75;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1323,144,0
chrXVI	197642	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=22.54;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1836,192,0
chrXVI	197735	.	A	G	27.02	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427;DP=75;Dels=0.00;FS=53.392;HaplotypeScore=25.3274;MLEAC=1;MLEAF=0.500;MQ=57.81;MQ0=0;MQRankSum=0.418;QD=0.36;ReadPosRankSum=-2.515;SB=-6.508e-03	GT:AD:DP:GQ:PL	0/1:62,12:75:57:57,0,1003
chrXVI	197759	.	G	A	642.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.873;DP=80;Dels=0.00;FS=57.517;HaplotypeScore=21.5732;MLEAC=1;MLEAF=0.500;MQ=56.88;MQ0=0;MQRankSum=-0.024;QD=8.03;ReadPosRankSum=-1.552;SB=-3.474e+02	GT:AD:DP:GQ:PL	0/1:36,44:80:99:672,0,431
chrXVI	197765	.	A	G	761.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;DP=82;Dels=0.00;FS=48.155;HaplotypeScore=24.9326;MLEAC=1;MLEAF=0.500;MQ=56.95;MQ0=0;MQRankSum=1.232;QD=9.28;ReadPosRankSum=-0.179;SB=-4.016e+02	GT:AD:DP:GQ:PL	0/1:32,49:82:99:791,0,366
chrXVI	198059	.	T	A	1163	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.71;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1196,132,0
chrXVI	198060	.	G	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.57;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1266,138,0
chrXVI	198072	.	G	A	1659	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.74;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1692,180,0
chrXVI	198199	.	A	G	1920	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=85;Dels=0.00;FS=3.561;HaplotypeScore=8.1340;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=-0.289;QD=22.59;ReadPosRankSum=1.691;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:1,83:85:99:1953,213,0
chrXVI	198304	.	A	T	1713	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.15;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1746,183,0
chrXVI	198355	.	A	T	1496	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.68;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1529,168,0
chrXVI	198596	.	G	A	1703	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=22.12;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1736,180,0
chrXVI	198637	.	A	G	1203	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.87;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1236,135,0
chrXVI	198653	.	G	A	1149	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=22.10;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1182,126,0
chrXVI	199138	.	T	C	1166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.742;QD=23.80;ReadPosRankSum=1.662;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1199,132,0
chrXVI	199177	.	G	A	813	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.91;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:846,96,0
chrXVI	199210	.	C	A	593	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=17.97;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:66:626,66,0
chrXVI	199239	.	C	T	532	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=15.20;SB=-3.040e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:60:565,60,0
chrXVI	199277	.	T	C	796	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.41;SB=-2.490e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:829,93,0
chrXVI	199576	.	T	A	1302	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.732;QD=23.25;ReadPosRankSum=1.604;SB=-2.000e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1335,150,0
chrXVI	199685	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.8562;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.56;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1454,156,0
chrXVI	199717	.	C	T	1454	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.45;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1487,159,0
chrXVI	199801	.	T	C	1793	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1361;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.85;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1826,204,0
chrXVI	199875	.	G	A	1599	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=21.04;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1632,171,0
chrXVI	199884	.	C	T	1499	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=21.72;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1532,168,0
chrXVI	200053	.	G	A	1580	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.35;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1613,171,0
chrXVI	200253	.	A	G	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.2061;MLEAC=2;MLEAF=1.00;MQ=56.42;MQ0=0;MQRankSum=0.707;QD=20.85;ReadPosRankSum=1.661;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2076,228,0
chrXVI	200515	.	A	G	2124	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.84;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2157,234,0
chrXVI	200534	.	G	A	2088	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=21.31;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,97:98:99:2121,228,0
chrXVI	200650	.	A	G	1262	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=19.72;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:64:99:1295,144,0
chrXVI	200671	.	A	G	1216	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.59;MQ0=0;MQRankSum=0.293;QD=18.71;ReadPosRankSum=1.572;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1249,141,0
chrXVI	200757	.	G	T	1037	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=19.57;SB=-2.310e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1070,117,0
chrXVI	201034	.	C	T	929	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.0244;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=20.20;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:962,102,0
chrXVI	201112	.	C	T	1251	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.51;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1284,144,0
chrXVI	201192	.	A	G	1197	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=19.62;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1230,135,0
chrXVI	201198	.	C	T	1229	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=17.31;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1262,135,0
chrXVI	202057	.	A	G	1807	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=3.066;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.438;QD=23.78;ReadPosRankSum=2.385;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1840,204,0
chrXVI	202096	.	C	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7998;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=23.65;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1712,180,0
chrXVI	202171	.	A	G	2417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=112;Dels=0.00;FS=3.047;HaplotypeScore=9.6307;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.610;QD=21.58;ReadPosRankSum=2.317;SB=-1.414e+03	GT:AD:DP:GQ:PL	1/1:2,110:112:99:2450,279,0
chrXVI	202399	.	G	A	1495	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=23.00;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1528,162,0
chrXVI	202426	.	C	T	1669	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=23.18;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1702,180,0
chrXVI	202483	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.342;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=1.195;QD=17.82;ReadPosRankSum=1.683;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1298,144,0
chrXVI	202594	.	A	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=16.21;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1184,132,0
chrXVI	202808	.	C	T	770	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=18.33;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:803,87,0
chrXVI	203409	.	T	A	1734	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.52;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1767,192,0
chrXVI	203462	.	T	C	1744	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.682;QD=25.28;ReadPosRankSum=1.682;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1777,195,0
chrXVI	203786	.	G	A	2483	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.87;SB=-1.488e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2516,267,0
chrXVI	203840	.	A	G	2631	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.245;DP=120;Dels=0.00;FS=7.482;HaplotypeScore=10.1205;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.507;QD=21.92;ReadPosRankSum=2.409;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:2,118:120:99:2664,294,0
chrXVI	204722	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=19.98;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1192,126,0
chrXVI	204854	.	T	G	1619	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.99;SB=-9.610e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1652,180,0
chrXVI	204941	.	A	G	2449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=-0.706;QD=22.68;ReadPosRankSum=1.668;SB=-1.237e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2482,273,0
chrXVI	205023	.	C	A	2327	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=8.3482;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=19.72;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2360,264,0
chrXVI	205415	.	C	G	1986	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.28;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2019,225,0
chrXVI	206288	.	T	C	1061	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.65;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1094,120,0
chrXVI	206683	.	T	C	863	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=21.05;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:896,99,0
chrXVI	206912	.	T	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.48;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1139,123,0
chrXVI	207675	.	A	G	1863	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.47;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,88:91:99:1896,210,0
chrXVI	207823	.	A	T	3105	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.366;DP=147;Dels=0.00;FS=3.038;HaplotypeScore=7.5698;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.677;QD=21.12;ReadPosRankSum=2.416;SB=-1.788e+03	GT:AD:DP:GQ:PL	1/1:2,145:147:99:3138,342,0
chrXVI	208045	.	G	A	2285	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.9233;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.62;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2318,246,0
chrXVI	208076	.	C	T	2840	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=5.6243;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.52;SB=-1.285e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2873,300,0
chrXVI	208304	.	C	T	1662	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.6203;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=20.52;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1695,180,0
chrXVI	208546	.	C	T	1336	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.55;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1369,144,0
chrXVI	208681	.	C	T	1853	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;QD=19.30;SB=-1.100e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1886,201,0
chrXVI	208687	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=96;Dels=0.00;FS=3.711;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.36;MQ0=0;MQRankSum=0.663;QD=17.29;ReadPosRankSum=1.622;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:1,93:96:99:1693,192,0
chrXVI	208816	.	G	A	1085	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.73;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1118,120,0
chrXVI	208843	.	T	C	1109	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.0469;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.80;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1142,123,0
chrXVI	209844	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.01;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1666,171,0
chrXVI	209982	.	C	T	1473	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8141;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=16.55;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1506,162,0
chrXVI	210131	.	C	T	2998	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.98;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3031,327,0
chrXVI	210171	.	C	T	3118	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=8.2548;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.36;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,126:128:99:3151,348,0
chrXVI	210288	.	T	G	2834	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.902;QD=23.42;ReadPosRankSum=-0.358;SB=-9.910e+02	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2867,315,0
chrXVI	210366	.	G	A	2197	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7489;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=21.97;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2230,237,0
chrXVI	210423	.	G	A	2985	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=22.79;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3018,324,0
chrXVI	210544	.	A	G	631	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=16.18;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:664,72,0
chrXVI	210554	.	C	A	557	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=14.28;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:63:590,63,0
chrXVI	210669	.	A	G	1195	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=19.92;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1228,135,0
chrXVI	210711	.	T	G	1649	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=14.5819;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=19.87;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1682,189,0
chrXVI	210762	.	C	T	1744	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=21.01;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1777,189,0
chrXVI	210783	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.757;DP=79;Dels=0.00;FS=2.615;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;MQRankSum=0.577;QD=20.56;ReadPosRankSum=2.911;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:3,76:79:99:1657,183,0
chrXVI	210832	.	C	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.00;SB=-2.850e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1482,159,0
chrXVI	210930	.	G	A	1216	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=21.71;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1249,132,0
chrXVI	211043	.	C	T	1289	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.8897;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=18.68;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1322,144,0
chrXVI	211065	.	C	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=16.98;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1120,120,0
chrXVI	211075	.	G	A	1206	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.00;SB=-4.390e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1239,132,0
chrXVI	211572	.	G	A	729	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.39;MQ0=0;QD=16.57;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:84:762,84,0
chrXVI	211577	.	T	A	683	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.91;MQ0=0;QD=17.07;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:78:716,78,0
chrXVI	211951	.	T	A	191.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.346;QD=4.25;ReadPosRankSum=1.655;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:24:224,24,0
chrXVI	212295	.	C	A	1953	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=46.85;MQ0=0;QD=22.71;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1986,213,0
chrXVI	212370	.	A	G	2335	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=22.67;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,100:103:99:2368,267,0
chrXVI	212526	.	T	C	662	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.69;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:78:695,78,0
chrXVI	212736	.	A	G	939	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.884;QD=19.16;ReadPosRankSum=1.379;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,48:49:99:972,111,0
chrXVI	212773	.	G	A	1076	filter	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.93;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1109,123,0
chrXVI	213205	.	T	C	2396	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=57.08;MQ0=0;QD=21.20;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2429,264,0
chrXVI	213381	.	T	C	1795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.510;QD=22.44;ReadPosRankSum=1.688;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1828,198,0
chrXVI	213429	.	A	G	1509	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.5146;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=20.96;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1542,171,0
chrXVI	213597	.	T	A	1168	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.6706;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=0.996;QD=14.60;ReadPosRankSum=1.689;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1201,138,0
chrXVI	213603	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=16.79;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1292,144,0
chrXVI	213800	.	T	G	913	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=16.60;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:946,102,0
chrXVI	213812	.	G	A	665	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=15.47;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:698,75,0
chrXVI	213813	.	G	A	630	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=14.65;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:663,72,0
chrXVI	214028	.	T	C	1631	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.65;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1664,186,0
chrXVI	214333	.	G	A	959	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.30;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:992,105,0
chrXVI	214358	.	A	C	792	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.00;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:93:825,93,0
chrXVI	214650	.	C	T	1350	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.28;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1383,147,0
chrXVI	214724	.	C	T	689	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.14;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:78:722,78,0
chrXVI	214791	.	C	T	756	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.60;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:789,84,0
chrXVI	214866	.	T	C	1467	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.26;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1500,168,0
chrXVI	214888	.	T	A	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.281;DP=74;Dels=0.00;FS=7.811;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;MQRankSum=0.727;QD=21.65;ReadPosRankSum=2.382;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1635,174,0
chrXVI	214963	.	A	G	1947	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.38;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1980,222,0
chrXVI	215014	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.75;SB=-9.370e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1527,165,0
chrXVI	215112	.	A	C	673	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=16.02;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:78:706,78,0
chrXVI	215126	.	A	G	559	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=15.97;SB=-2.870e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:66:592,66,0
chrXVI	215154	.	T	C	323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=3.590;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-0.433;QD=10.09;ReadPosRankSum=1.625;SB=-3.290e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:39:356,39,0
chrXVI	215183	.	T	C	306	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=10.93;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:36:339,36,0
chrXVI	215186	.	T	C	330	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=10.65;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:39:363,39,0
chrXVI	215329	.	A	T	830	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=12.39;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:93:863,93,0
chrXVI	215360	.	T	A	77.51	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=1.16;SB=-5.075e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:12:110,12,0
chrXVI	215558	.	A	G	742	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=21.20;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,33:35:84:775,84,0
chrXVI	215587	.	G	C	926	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=21.53;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:959,102,0
chrXVI	215624	.	T	C	1230	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.21;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1263,138,0
chrXVI	215725	.	C	G	678	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=12.79;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:81:711,81,0
chrXVI	215727	.	T	C	624	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=12.48;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:75:657,75,0
chrXVI	215776	.	T	C	659	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=14.02;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:78:692,78,0
chrXVI	215778	.	C	T	687	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=14.62;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:78:720,78,0
chrXVI	216100	.	G	A	1356	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8803;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.98;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1389,150,0
chrXVI	216228	.	G	T	1200	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.64;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1233,132,0
chrXVI	216423	.	G	C	1005	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.27;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1038,117,0
chrXVI	216447	.	A	C	1210	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9941;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=19.21;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1243,138,0
chrXVI	216636	.	T	C	1229	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.35;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1262,141,0
chrXVI	216683	.	T	C	941	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.39;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:974,111,0
chrXVI	216785	.	G	T	22.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.703;DP=46;Dels=0.00;FS=45.617;HaplotypeScore=4.0894;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=1.802;QD=0.48;ReadPosRankSum=-3.902;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:36,10:46:52:52,0,489
chrXVI	217075	.	G	A	1557	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=23.24;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1590,168,0
chrXVI	217188	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.81;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:99:1167,129,0
chrXVI	217218	.	A	G	1160	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=-0.279;QD=18.71;ReadPosRankSum=1.676;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1193,135,0
chrXVI	217275	.	A	C	1826	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=22.54;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1859,201,0
chrXVI	217320	.	G	A	1586	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;MQRankSum=1.534;QD=22.03;ReadPosRankSum=0.000;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:1,70:72:99:1619,171,0
chrXVI	217557	.	A	C	833	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=12.43;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:96:866,96,0
chrXVI	217560	.	C	T	940	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=13.62;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:973,105,0
chrXVI	217674	.	G	A	2332	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=4.3104;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.10;SB=-1.544e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2365,249,0
chrXVI	217702	.	T	G	1656	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.245;HaplotypeScore=3.3555;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;MQRankSum=-1.696;QD=17.07;ReadPosRankSum=1.696;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:1,95:97:99:1689,192,0
chrXVI	217725	.	A	G	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=6.652;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;MQRankSum=-0.172;QD=16.96;ReadPosRankSum=2.388;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:2,78:81:99:1407,159,0
chrXVI	217803	.	A	G	1193	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.626;QD=17.29;ReadPosRankSum=1.679;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:1,64:69:99:1226,135,0
chrXVI	217860	.	A	G	1135	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=17.20;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1168,129,0
chrXVI	217929	.	A	G	1368	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.790;DP=72;Dels=0.00;FS=5.575;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;MQRankSum=-0.564;QD=19.00;ReadPosRankSum=2.903;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:3,69:72:99:1401,159,0
chrXVI	218007	.	G	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=12.9308;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.82;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2531,279,0
chrXVI	218115	.	C	T	1462	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.15;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1495,159,0
chrXVI	218188	.	T	C	1032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-0.333;QD=19.85;ReadPosRankSum=1.599;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1065,114,0
chrXVI	218443	.	T	A	1649	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=82;Dels=0.00;FS=9.525;HaplotypeScore=7.7632;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.988;QD=20.11;ReadPosRankSum=2.766;SB=-9.030e+02	GT:AD:DP:GQ:PL	1/1:3,79:82:99:1682,165,0
chrXVI	218575	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9413;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.07;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1671,183,0
chrXVI	219029	.	C	T	1787	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=19.22;SB=-1.197e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1820,192,0
chrXVI	219197	.	T	C	1897	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=21.08;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1930,216,0
chrXVI	219416	.	C	T	1838	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=21.37;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1871,195,0
chrXVI	219977	.	C	T	1797	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.4506;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=20.90;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1830,204,0
chrXVI	220050	.	A	T	1712	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.23;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1745,189,0
chrXVI	220276	.	G	A	1930	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.44;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,83:86:99:1963,216,0
chrXVI	220547	.	T	C	2279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.262;DP=118;Dels=0.00;FS=17.787;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.277;QD=19.31;ReadPosRankSum=3.322;SB=-9.810e+02	GT:AD:DP:GQ:PL	1/1:4,113:118:99:2312,255,0
chrXVI	221029	.	A	G	1830	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=24.08;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1863,207,0
chrXVI	221076	.	T	C	1538	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.4123;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=22.62;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1571,174,0
chrXVI	221149	.	C	T	1502	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.76;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1535,165,0
chrXVI	221325	.	A	G	943	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.18;MQ0=0;QD=17.46;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:976,108,0
chrXVI	221327	.	A	T	1013	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=18.42;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1046,114,0
chrXVI	221382	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.04;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1596,168,0
chrXVI	221495	.	G	A	1283	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.74;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1316,141,0
chrXVI	221710	.	G	A	1353	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=21.48;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1386,147,0
chrXVI	221729	.	T	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=20.74;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1547,165,0
chrXVI	221764	.	C	T	1424	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.94;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1457,156,0
chrXVI	222045	.	C	T	1997	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=12.0475;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.47;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2030,219,0
chrXVI	222162	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=18.99;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1552,165,0
chrXVI	222390	.	T	C	2526	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=123;Dels=0.00;FS=3.119;HaplotypeScore=7.2480;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.217;QD=20.54;ReadPosRankSum=1.703;SB=-1.392e+03	GT:AD:DP:GQ:PL	1/1:1,120:123:99:2559,279,0
chrXVI	222598	.	G	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=21.91;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2531,267,0
chrXVI	222732	.	C	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=16.39;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1557,168,0
chrXVI	222796	.	G	T	1826	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.2470;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.43;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1859,198,0
chrXVI	222840	.	A	G	1333	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.3873;MLEAC=2;MLEAF=1.00;MQ=52.90;MQ0=0;QD=18.26;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1366,150,0
chrXVI	222884	.	A	T	1657	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=44.17;MQ0=0;QD=18.62;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1690,177,0
chrXVI	222894	.	C	T	1812	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=45.14;MQ0=0;QD=17.94;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1845,207,0
chrXVI	222905	.	G	A	1919	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=46.63;MQ0=0;QD=16.98;SB=-1.154e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1952,210,0
chrXVI	222908	.	T	G	1833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=4.272;HaplotypeScore=2.6420;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=0.015;QD=15.94;ReadPosRankSum=1.642;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:1,114:115:99:1866,201,0
chrXVI	222957	.	G	C	2226	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.87;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2259,246,0
chrXVI	223706	.	C	T	2078	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.61;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2111,222,0
chrXVI	224305	.	T	G	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.347;QD=24.51;ReadPosRankSum=1.684;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1798,198,0
chrXVI	224569	.	G	A	2301	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.24;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2334,249,0
chrXVI	224815	.	T	C	1859	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=24.14;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1892,213,0
chrXVI	224848	.	A	G	2239	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=22.17;SB=-1.240e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2272,255,0
chrXVI	225103	.	A	C	1739	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.108;HaplotypeScore=8.3342;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-0.808;QD=19.32;ReadPosRankSum=1.655;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:1772,198,0
chrXVI	225172	.	C	T	2055	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.41;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2088,228,0
chrXVI	225206	.	T	C	1732	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=19.46;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1765,195,0
chrXVI	225219	.	G	C	1728	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=9.6215;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=17.45;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,96:99:99:1761,195,0
chrXVI	225362	.	C	T	2134	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.3353;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.56;SB=-1.153e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2167,237,0
chrXVI	225419	.	C	T	1693	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.1802;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.40;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1726,186,0
chrXVI	225452	.	G	T	1403	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=18.46;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1436,153,0
chrXVI	225486	.	T	A	1355	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0888;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=19.64;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1388,144,0
chrXVI	225550	.	A	G	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.586;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.4607;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;MQRankSum=1.244;QD=17.34;ReadPosRankSum=1.683;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1264,144,0
chrXVI	225773	.	A	G	2280	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=9.5628;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=21.71;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2313,249,0
chrXVI	225805	.	C	A	2006	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=23.88;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2039,216,0
chrXVI	225893	.	T	C	2316	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.38;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2349,255,0
chrXVI	226258	.	T	G	1996	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=20.16;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2029,222,0
chrXVI	226313	.	A	G	2519	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.411;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=1.489;QD=19.68;ReadPosRankSum=2.354;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:2,126:128:99:2552,279,0
chrXVI	226508	.	G	A	2449	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=55.01;MQ0=0;QD=19.75;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2482,264,0
chrXVI	226571	.	C	A	1642	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.45;MQ0=0;QD=16.76;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1675,177,0
chrXVI	226573	.	A	C	1535	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.925;DP=97;Dels=0.00;FS=6.138;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;MQRankSum=-2.065;QD=15.82;ReadPosRankSum=2.925;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:3,91:97:99:1568,174,0
chrXVI	226604	.	C	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.67;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1588,168,0
chrXVI	226631	.	C	T	1309	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=16.16;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1342,144,0
chrXVI	226667	.	A	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.10;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1246,135,0
chrXVI	226841	.	C	G	1388	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=15.60;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1421,159,0
chrXVI	227093	.	C	T	1705	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.3462;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=24.71;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1738,183,0
chrXVI	227288	.	A	C	1548	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.5193;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.59;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1581,174,0
chrXVI	227603	.	C	T	1642	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=24.51;SB=-9.190e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1675,180,0
chrXVI	227635	.	G	A	1413	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=22.79;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1446,153,0
chrXVI	227707	.	A	T	922	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.04;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:955,102,0
chrXVI	227758	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.66;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1500,159,0
chrXVI	227828	.	A	G	1102	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=19.33;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1135,129,0
chrXVI	227980	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=8.9169;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;MQRankSum=0.734;QD=17.17;ReadPosRankSum=1.674;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1046,117,0
chrXVI	228063	.	T	C	1571	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=0.515;QD=20.95;ReadPosRankSum=1.685;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1604,174,0
chrXVI	228661	.	A	G	2214	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2247,249,0
chrXVI	228781	.	C	T	1938	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=9.7719;MLEAC=2;MLEAF=1.00;MQ=60.31;MQ0=0;QD=20.40;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1971,207,0
chrXVI	229093	.	C	T	3300.01	PASS	AC=2;AF=1.00;AN=2;DP=142;Dels=0.00;FS=0.000;HaplotypeScore=6.6574;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.24;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,142:142:99:3300,348,0
chrXVI	229246	.	A	C	1771	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=20.36;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1804,204,0
chrXVI	229273	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.2656;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.30;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1474,159,0
chrXVI	229636	.	T	C	1004	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.69;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1037,117,0
chrXVI	229768	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.37;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1155,123,0
chrXVI	229945	.	T	C	931	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=22.17;SB=-3.320e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:964,105,0
chrXVI	229960	.	A	G	946	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.57;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:979,108,0
chrXVI	230063	.	G	C	748	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.18;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:84:781,84,0
chrXVI	230341	.	A	G	581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.605;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.449;QD=21.52;ReadPosRankSum=1.605;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:1,26:27:69:614,69,0
chrXVI	230687	.	T	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.00;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1135,120,0
chrXVI	230703	.	C	T	891	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=18.56;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:924,99,0
chrXVI	231052	.	T	C	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=2.619;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;MQRankSum=-1.680;QD=22.34;ReadPosRankSum=2.327;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1820,198,0
chrXVI	231131	.	T	C	1624	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.95;SB=-8.540e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1657,183,0
chrXVI	231179	.	T	G	1954	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.46;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1987,222,0
chrXVI	231457	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.468;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.866;QD=21.73;ReadPosRankSum=1.675;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1337,144,0
chrXVI	231483	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=22.19;SB=-8.330e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1564,165,0
chrXVI	232109	.	G	T	2891	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=8.0357;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.94;SB=-1.191e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2924,312,0
chrXVI	232287	.	T	C	2207	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=6.7109;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.88;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2240,249,0
chrXVI	232382	.	A	G	2157	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.47;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2190,237,0
chrXVI	232435	.	C	T	2742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.409;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.4406;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=0.206;QD=23.24;ReadPosRankSum=0.440;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2775,273,0
chrXVI	232560	.	C	T	3861.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=22.71;SB=-1.472e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:3861,406,0
chrXVI	232568	.	T	G	3290.01	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=21.50;SB=-1.300e+03	GT:AD:DP:GQ:PL	1/1:0,152:153:99:3290,366,0
chrXVI	232653	.	G	A	1836	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.84;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1869,201,0
chrXVI	232790	.	G	C	2535	PASS	AC=2;AF=1.00;AN=2;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=15.1338;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=16.15;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,151:157:99:2568,291,0
chrXVI	232961	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.1230;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=20.32;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1618,180,0
chrXVI	233007	.	G	A	1746	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.54;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1779,192,0
chrXVI	233841	.	C	T	1913	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=23.33;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1946,207,0
chrXVI	234171	.	C	T	2289	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=19.73;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2322,252,0
chrXVI	234189	.	C	A	2342	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=20.73;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2375,252,0
chrXVI	234417	.	G	A	2560	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=9.3406;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=19.84;SB=-1.464e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2593,285,0
chrXVI	235149	.	A	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.06;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1577,174,0
chrXVI	235155	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.65;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1657,177,0
chrXVI	235215	.	A	G	1390	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.31;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1423,159,0
chrXVI	235371	.	C	T	924	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.00;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:957,102,0
chrXVI	235523	.	C	T	1392	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=19.89;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1425,150,0
chrXVI	235830	.	A	C	1699	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1666;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.47;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1732,186,0
chrXVI	236868	.	A	T	1450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=70;Dels=0.00;FS=3.701;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.459;QD=20.71;ReadPosRankSum=1.579;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1483,159,0
chrXVI	237125	.	C	T	1727	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.08;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1760,186,0
chrXVI	237141	.	T	C	1638	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=19.05;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1671,186,0
chrXVI	237387	.	G	A	2174	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.13;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2207,237,0
chrXVI	237675	.	C	T	2759	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=12.9996;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=21.90;SB=-1.316e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2792,294,0
chrXVI	237745	.	T	C	2221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.400;DP=98;Dels=0.00;FS=2.908;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.018;QD=22.66;ReadPosRankSum=2.148;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:2,96:98:99:2254,246,0
chrXVI	237971	.	C	T	1689	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.52;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1722,186,0
chrXVI	238002	.	T	A	2000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;MQRankSum=-1.576;QD=22.47;ReadPosRankSum=1.693;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2033,219,0
chrXVI	238051	.	A	G	2054	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.96;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2087,228,0
chrXVI	238061	.	C	A	2111	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.9906;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.50;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2144,225,0
chrXVI	238082	.	C	T	1612	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=17.33;SB=-1.071e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1645,174,0
chrXVI	238111	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=1.343;QD=17.10;ReadPosRankSum=1.693;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:1,88:90:99:1572,174,0
chrXVI	238515	.	G	A	1762	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=20.98;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1795,189,0
chrXVI	238556	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=21.38;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1850,204,0
chrXVI	238578	.	C	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.76;MQ0=0;QD=20.63;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1972,207,0
chrXVI	238659	.	T	G	2503	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.337;DP=131;Dels=0.00;FS=8.598;HaplotypeScore=9.6333;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.755;QD=19.11;ReadPosRankSum=2.412;SB=-1.219e+03	GT:AD:DP:GQ:PL	1/1:2,129:131:99:2536,282,0
chrXVI	238781	.	T	C	2264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.376;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-1.687;QD=22.42;ReadPosRankSum=1.366;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:2,98:101:99:2297,252,0
chrXVI	238845	.	T	C	1976	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.02;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:2009,222,0
chrXVI	238991	.	A	G	1306	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=2.222;QD=20.09;ReadPosRankSum=2.374;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1339,150,0
chrXVI	239140	.	T	C	572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=122;Dels=0.01;FS=3.194;HaplotypeScore=18.8693;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-1.074;QD=4.69;ReadPosRankSum=1.446;SB=-1.492e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:66:605,66,0
chrXVI	239318	.	C	T	926	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.74;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:99:959,102,0
chrXVI	239611	.	G	T	1217	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=58;Dels=0.00;FS=4.393;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;MQRankSum=-1.606;QD=20.98;ReadPosRankSum=-0.031;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1250,138,0
chrXVI	239629	.	A	T	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=5.362;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;MQRankSum=0.157;QD=22.40;ReadPosRankSum=1.669;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1265,135,0
chrXVI	240133	.	C	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.12;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1559,171,0
chrXVI	240184	.	T	C	2024	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.24;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,88:91:99:2057,228,0
chrXVI	240215	.	G	A	2142	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=24.07;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2175,231,0
chrXVI	240445	.	C	T	1895	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=20.82;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1928,204,0
chrXVI	240478	.	G	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.70;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1606,171,0
chrXVI	240681	.	C	G	1290	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8051;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=17.67;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1323,150,0
chrXVI	240946	.	A	G	973	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=17.37;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1006,111,0
chrXVI	241053	.	G	C	1474	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.4309;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.42;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1507,168,0
chrXVI	241174	.	A	C	1964	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=22.32;SB=-1.076e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1997,219,0
chrXVI	241200	.	G	A	2233	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=54.46;MQ0=0;QD=22.33;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2266,243,0
chrXVI	242099	.	A	G	2079	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,110:111:99:2112,240,0
chrXVI	242227	.	G	A	2498	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=6.4464;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.13;SB=-1.204e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2531,273,0
chrXVI	242446	.	T	C	1405	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=18.49;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1438,159,0
chrXVI	242449	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=17.09;SB=-9.940e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1400,156,0
chrXVI	242716	.	A	T	2911	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=134;Dels=0.00;FS=3.001;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=-1.567;QD=21.72;ReadPosRankSum=2.412;SB=-1.588e+03	GT:AD:DP:GQ:PL	1/1:2,132:134:99:2944,324,0
chrXVI	242761	.	G	A	2697	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.05;SB=-1.490e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2730,291,0
chrXVI	242816	.	C	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=7.4571;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=21.14;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1893,204,0
chrXVI	243021	.	A	G	1418	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.16;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1451,159,0
chrXVI	243600	.	C	T	1404	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=21.60;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1437,153,0
chrXVI	244301	.	G	A	914	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.39;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,35:36:99:947,102,0
chrXVI	244409	.	T	C	972	filter	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=24.92;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,38:39:99:1005,111,0
chrXVI	244502	.	A	G	1894	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.5155;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.67;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,75:80:99:1927,213,0
chrXVI	244633	.	A	G	1181	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.2550;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=25.67;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1214,129,0
chrXVI	244785	.	G	A	2683	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.29;SB=-1.201e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2716,294,0
chrXVI	244939	.	T	C	1932	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=21.95;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1965,213,0
chrXVI	244964	.	C	T	1325	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=18.15;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1358,150,0
chrXVI	245059	.	C	T	2016	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.00;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2049,225,0
chrXVI	245159	.	T	C	1833	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=20.83;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1866,204,0
chrXVI	245345	.	G	A	1726	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.32;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1759,192,0
chrXVI	245420	.	C	T	1477	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.43;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1510,162,0
chrXVI	245496	.	C	T	1081	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.32;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1114,117,0
chrXVI	245982	.	A	T	2234	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.546;DP=95;Dels=0.00;FS=4.003;HaplotypeScore=7.2898;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.726;QD=23.52;ReadPosRankSum=1.695;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2267,240,0
chrXVI	247153	.	C	A	1447	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.34;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1480,156,0
chrXVI	248123	.	C	T	999	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=14.69;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1032,111,0
chrXVI	248288	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.35;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1741,183,0
chrXVI	248813	.	G	A	2605	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.2416;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=19.89;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2638,282,0
chrXVI	249419	.	A	G	2098	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.32;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2131,234,0
chrXVI	252117	.	G	A	1819	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.92;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1852,195,0
chrXVI	252372	.	T	A	2107	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.403;DP=106;Dels=0.00;FS=2.793;HaplotypeScore=6.4829;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.546;QD=19.88;ReadPosRankSum=2.287;SB=-1.110e+03	GT:AD:DP:GQ:PL	1/1:2,104:106:99:2140,225,0
chrXVI	252434	.	A	G	2367	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=9.7238;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.669;QD=20.76;ReadPosRankSum=1.702;SB=-1.495e+03	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2400,261,0
chrXVI	252501	.	A	T	2569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=12.1449;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.994;QD=20.89;ReadPosRankSum=1.533;SB=-1.432e+03	GT:AD:DP:GQ:PL	1/1:1,121:123:99:2602,285,0
chrXVI	252618	.	C	T	2927	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=9.5449;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=19.51;SB=-1.888e+03	GT:AD:DP:GQ:PL	1/1:0,149:150:99:2960,318,0
chrXVI	253090	.	G	A	1637	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.220;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.1177;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.787;QD=18.39;ReadPosRankSum=1.693;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:1,87:89:99:1670,161,0
chrXVI	253375	.	C	T	695	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=5.3661;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.44;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:728,78,0
chrXVI	253892	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.3470;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=20.45;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1035,117,0
chrXVI	254117	.	G	A	2775	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.92;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2808,309,0
chrXVI	254530	.	C	T	1453	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.06;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1486,159,0
chrXVI	254741	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=18.64;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1375,153,0
chrXVI	254778	.	G	A	1361	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=18.90;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1394,147,0
chrXVI	254813	.	G	A	1211	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.53;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1244,138,0
chrXVI	254822	.	G	A	1204	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.52;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1237,132,0
chrXVI	254974	.	A	G	1894	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.67;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1927,213,0
chrXVI	255750	.	G	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.94;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1415,153,0
chrXVI	256359	.	T	G	668	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=19.09;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:78:701,78,0
chrXVI	256510	.	T	C	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;DP=70;Dels=0.00;FS=2.626;HaplotypeScore=5.6508;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.029;QD=21.81;ReadPosRankSum=2.900;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1560,171,0
chrXVI	256731	.	C	T	916	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.81;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:949,99,0
chrXVI	256827	.	T	A	1903	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.38;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1936,210,0
chrXVI	257921	.	G	A	1569	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.46;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1602,177,0
chrXVI	257972	.	C	T	1793	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.28;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1826,192,0
chrXVI	258098	.	T	C	1501	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.6653;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=19.00;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1534,168,0
chrXVI	258285	.	C	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.8124;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.52;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1505,162,0
chrXVI	259711	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=10.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=-1.178;QD=23.14;ReadPosRankSum=1.594;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1190,132,0
chrXVI	261137	.	C	G	786	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.17;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:90:819,90,0
chrXVI	261638	.	A	G	2042	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.4044;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=25.85;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2075,222,0
chrXVI	262228	.	G	A	835	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=21.97;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:90:868,90,0
chrXVI	262452	.	T	G	1224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=65;Dels=0.00;FS=6.021;HaplotypeScore=7.3423;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.732;QD=18.83;ReadPosRankSum=1.678;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1257,141,0
chrXVI	262588	.	G	A	993	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=5.1059;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.07;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1026,111,0
chrXVI	263263	.	A	G	1543	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.73;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,68:71:99:1576,174,0
chrXVI	263569	.	T	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.24;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1923,204,0
chrXVI	263635	.	C	G	1777	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=19.74;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,87:90:99:1810,201,0
chrXVI	263733	.	A	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.08;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1361,144,0
chrXVI	264524	.	A	C	1675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=81;Dels=0.00;FS=3.536;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.206;QD=20.68;ReadPosRankSum=1.688;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:1,78:81:99:1708,186,0
chrXVI	264882	.	T	A	1879	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.349;DP=98;Dels=0.00;FS=8.071;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=0.013;QD=19.17;ReadPosRankSum=2.400;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:2,96:98:99:1912,204,0
chrXVI	264964	.	C	T	2933	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=23.28;SB=-1.228e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2966,312,0
chrXVI	265153	.	C	T	2140	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=24.04;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:2173,234,0
chrXVI	266023	.	C	T	1473	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.76;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1506,159,0
chrXVI	266858	.	C	G	1598	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1631,186,0
chrXVI	267269	.	A	T	2113	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.74;SB=-1.064e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2146,228,0
chrXVI	267899	.	C	T	2084	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=7.4288;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=21.27;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2117,225,0
chrXVI	268208	.	C	T	1519	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.81;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1552,165,0
chrXVI	269012	.	C	T	1307	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=22.15;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1340,141,0
chrXVI	269345	.	C	T	1118	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.82;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1151,126,0
chrXVI	270158	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.3145;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.36;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1388,150,0
chrXVI	270454	.	C	G	1344	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.06;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1377,150,0
chrXVI	270592	.	G	T	2697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=10.9868;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.702;QD=23.05;ReadPosRankSum=0.806;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:1,115:117:99:2730,297,0
chrXVI	270630	.	T	C	1709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=76;Dels=0.00;FS=5.755;HaplotypeScore=3.4721;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=1.627;QD=22.49;ReadPosRankSum=2.774;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1742,192,0
chrXVI	270689	.	C	T	854	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.57;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:887,96,0
chrXVI	270728	.	T	C	876	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=18.25;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:909,102,0
chrXVI	271083	.	T	A	568	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=18.93;SB=-8.401e+01	GT:AD:DP:GQ:PL	1/1:0,30:30:66:601,66,0
chrXVI	271095	.	C	T	823	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=21.66;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:93:856,93,0
chrXVI	271127	.	G	T	880	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.16;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:96:913,96,0
chrXVI	271149	.	A	G	481	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.18;SB=-2.780e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:57:514,57,0
chrXVI	271460	.	C	T	1391	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=21.73;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1424,153,0
chrXVI	271555	.	G	A	897	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=18.31;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:930,99,0
chrXVI	271666	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.43;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1533,162,0
chrXVI	272032	.	A	G	1276	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=18.76;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1309,141,0
chrXVI	272038	.	C	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0716;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=16.00;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1137,126,0
chrXVI	272093	.	C	G	1185	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=16.23;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1218,135,0
chrXVI	272485	.	G	A	2203	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.75;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2236,234,0
chrXVI	273202	.	A	G	1998	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.20;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2031,219,0
chrXVI	273221	.	A	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.52;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1880,198,0
chrXVI	273229	.	G	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.83;MQ0=0;QD=19.53;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1849,198,0
chrXVI	273874	.	T	C	625	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.820;DP=39;Dels=0.00;FS=6.293;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;MQRankSum=-1.818;QD=16.03;ReadPosRankSum=2.820;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:3,36:39:72:658,72,0
chrXVI	273875	.	T	C	647	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.91;MQ0=0;QD=16.59;SB=-5.020e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:72:680,72,0
chrXVI	274025	.	T	C	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.424;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.480;QD=21.38;ReadPosRankSum=1.606;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1209,135,0
chrXVI	274370	.	T	C	2346	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=3.9780;MLEAC=2;MLEAF=1.00;MQ=57.86;MQ0=0;QD=22.78;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2379,261,0
chrXVI	274407	.	G	A	2071	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.76;SB=-1.192e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2104,222,0
chrXVI	274818	.	C	T	1665	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.08;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1698,183,0
chrXVI	275039	.	C	T	2423	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=23.75;SB=-1.069e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2456,273,0
chrXVI	275384	.	G	A	2115	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=22.74;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2148,228,0
chrXVI	275387	.	G	A	2033	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.86;SB=-9.740e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2066,219,0
chrXVI	275615	.	G	C	3056	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=8.3736;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.83;SB=-1.718e+03	GT:AD:DP:GQ:PL	1/1:0,137:140:99:3089,336,0
chrXVI	275804	.	A	T	1370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4448;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=0.060;QD=22.10;ReadPosRankSum=2.371;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1403,147,0
chrXVI	275818	.	G	A	1460	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;QD=21.16;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1493,159,0
chrXVI	275836	.	C	A	1771	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=22.14;SB=-2.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1804,186,0
chrXVI	275908	.	A	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6707;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=17.45;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1952,210,0
chrXVI	275911	.	T	C	1906	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.494;DP=123;Dels=0.00;FS=38.850;HaplotypeScore=5.6105;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;MQRankSum=-0.668;QD=15.50;ReadPosRankSum=4.972;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:9,111:123:99:1939,216,0
chrXVI	276005	.	G	A	3407.01	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.6152;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=25.05;SB=-1.258e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3407,357,0
chrXVI	276276	.	A	G	1888	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=20.75;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1921,216,0
chrXVI	276934	.	G	A	1815	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.31;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1848,198,0
chrXVI	277322	.	T	C	1236	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.671;DP=62;Dels=0.00;FS=8.044;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=-1.215;QD=19.94;ReadPosRankSum=3.671;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:5,57:62:99:1269,141,0
chrXVI	277436	.	C	T	1550	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=19.14;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1583,171,0
chrXVI	277547	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.97;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1501,171,0
chrXVI	277562	.	G	T	1438	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=19.70;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1471,156,0
chrXVI	279637	.	A	G	918	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.3059;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=17.32;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:951,108,0
chrXVI	279722	.	A	G	1029	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=21.00;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1062,117,0
chrXVI	279843	.	C	T	1328	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.01;FS=0.000;HaplotypeScore=7.7181;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=17.95;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1361,147,0
chrXVI	280007	.	A	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.55;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1587,177,0
chrXVI	280422	.	A	G	1256	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;DP=63;Dels=0.00;FS=9.692;HaplotypeScore=5.0175;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;MQRankSum=-1.247;QD=19.94;ReadPosRankSum=2.887;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:3,59:63:99:1289,141,0
chrXVI	280470	.	A	G	1196	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=21.75;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1229,132,0
chrXVI	280623	.	C	A	1855	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=25.07;SB=-4.750e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1888,201,0
chrXVI	280692	.	T	G	1840	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=1.559;QD=23.00;ReadPosRankSum=1.689;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1873,207,0
chrXVI	280860	.	A	G	845	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=52.71;MQ0=0;QD=17.98;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:96:878,96,0
chrXVI	280872	.	T	C	858	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=5.351;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;MQRankSum=0.144;QD=17.87;ReadPosRankSum=1.660;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:96:891,96,0
chrXVI	281659	.	T	C	2283	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.6352;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-1.202;QD=23.06;ReadPosRankSum=1.697;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:1,97:99:99:2316,252,0
chrXVI	281703	.	G	A	1694	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=19.47;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1727,183,0
chrXVI	281721	.	T	G	1532	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=17.41;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1565,177,0
chrXVI	281838	.	C	A	2367	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=21.32;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2400,258,0
chrXVI	281885	.	G	T	1847	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=54.66;MQ0=0;QD=18.47;SB=-1.009e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1880,198,0
chrXVI	281895	.	A	G	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=3.612;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;MQRankSum=-1.447;QD=17.01;ReadPosRankSum=1.610;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1479,162,0
chrXVI	281956	.	C	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=16.99;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1324,141,0
chrXVI	281975	.	G	A	1560	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=17.53;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1593,168,0
chrXVI	282180	.	T	C	2286	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.86;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2319,255,0
chrXVI	282264	.	T	C	1630	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=21.17;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1663,189,0
chrXVI	283520	.	G	A	1894	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=23.10;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1927,213,0
chrXVI	283527	.	A	G	1757	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=22.82;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1790,192,0
chrXVI	283933	.	C	T	1526	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=18.17;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1559,168,0
chrXVI	283936	.	T	C	1402	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=0.799;QD=17.52;ReadPosRankSum=1.066;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:1,77:80:99:1435,162,0
chrXVI	284100	.	C	T	2130	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.3010;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=20.68;SB=-1.146e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2163,228,0
chrXVI	284142	.	A	T	2366	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.2141;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=22.11;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2399,255,0
chrXVI	284388	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4584;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=15.20;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1279,141,0
chrXVI	284403	.	T	C	1343	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.1268;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=16.58;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1376,153,0
chrXVI	284476	.	T	G	1803	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.39;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1836,207,0
chrXVI	284591	.	C	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.7562;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.37;SB=-1.060e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1999,213,0
chrXVI	284661	.	A	G	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=3.757;HaplotypeScore=5.8833;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;MQRankSum=-1.504;QD=20.64;ReadPosRankSum=1.687;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1602,177,0
chrXVI	284769	.	T	C	1605	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=7.1305;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.048;QD=21.12;ReadPosRankSum=1.687;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1638,183,0
chrXVI	285327	.	T	C	1597	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1630,177,0
chrXVI	285375	.	T	C	1036	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.55;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1069,117,0
chrXVI	285432	.	T	C	989	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.78;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1022,114,0
chrXVI	285865	.	C	T	1057	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=20.33;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1090,114,0
chrXVI	286316	.	T	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.77;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1274,141,0
chrXVI	286391	.	C	T	1322	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=22.03;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1355,150,0
chrXVI	286721	.	T	C	2055	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=21.63;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2088,231,0
chrXVI	286752	.	A	G	2215	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.2863;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=21.50;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2248,246,0
chrXVI	286787	.	C	T	1975	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=21.24;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2008,213,0
chrXVI	286820	.	T	C	1347	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=17.72;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1380,159,0
chrXVI	286828	.	T	A	1366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=76;Dels=0.00;FS=4.658;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;MQRankSum=0.547;QD=17.97;ReadPosRankSum=1.687;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1399,147,0
chrXVI	286865	.	T	A	1857	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=55.72;MQ0=0;QD=19.14;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1890,204,0
chrXVI	286890	.	G	C	1612	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=19.19;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1645,180,0
chrXVI	286906	.	A	G	1667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.080;QD=19.61;ReadPosRankSum=1.691;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1700,186,0
chrXVI	286979	.	G	A	1553	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.43;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1586,174,0
chrXVI	287057	.	A	G	2581	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=22.44;SB=-1.512e+03	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2614,291,0
chrXVI	287066	.	G	A	2801	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.245;DP=121;Dels=0.00;FS=3.046;HaplotypeScore=5.3188;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=1.646;QD=23.15;ReadPosRankSum=1.618;SB=-1.584e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2834,300,0
chrXVI	287114	.	G	A	1754	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=21.13;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1787,192,0
chrXVI	287130	.	T	C	1508	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;QD=21.54;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1541,171,0
chrXVI	287198	.	T	A	1032	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=22.93;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1065,114,0
chrXVI	287238	.	C	T	1062	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.5679;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=21.67;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1095,117,0
chrXVI	287349	.	C	T	1916	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=23.65;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1949,207,0
chrXVI	287664	.	A	G	1261	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.02;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1294,144,0
chrXVI	288762	.	T	C	1780	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.25;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1813,198,0
chrXVI	289053	.	G	T	1315	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=18.52;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1348,144,0
chrXVI	289247	.	C	T	1577	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.90;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1610,171,0
chrXVI	289277	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.85;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1564,165,0
chrXVI	289442	.	A	G	1155	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=19.25;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1188,129,0
chrXVI	289457	.	G	A	1118	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=18.03;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1151,123,0
chrXVI	289458	.	G	A	1120	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.41;MQ0=0;QD=18.67;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1153,123,0
chrXVI	289469	.	T	C	793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;DP=63;Dels=0.00;FS=10.361;HaplotypeScore=4.6087;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;MQRankSum=-0.984;QD=12.59;ReadPosRankSum=2.824;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:3,60:63:93:826,93,0
chrXVI	289490	.	C	A	1134	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=15.53;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1167,126,0
chrXVI	289567	.	A	G	2652	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=11.1918;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=23.89;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2685,291,0
chrXVI	289908	.	G	T	2395	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.65;SB=-1.208e+03	GT:AD:DP:GQ:PL	1/1:0,114:116:99:2428,258,0
chrXVI	290044	.	A	G	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.210;DP=93;Dels=0.00;FS=8.285;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-0.559;QD=19.03;ReadPosRankSum=3.323;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:4,89:93:99:1803,198,0
chrXVI	290164	.	C	G	2133	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=19.04;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2166,237,0
chrXVI	290454	.	T	C	1425	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.36;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1458,162,0
chrXVI	290800	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=2.932;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.692;QD=19.21;ReadPosRankSum=2.263;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1301,144,0
chrXVI	291046	.	G	A	3204	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=22.89;SB=-1.426e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3237,360,0
chrXVI	291053	.	T	C	3122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;MQRankSum=-0.577;QD=22.14;ReadPosRankSum=1.708;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:1,140:141:99:3155,345,0
chrXVI	291114	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;MQRankSum=-0.162;QD=19.81;ReadPosRankSum=1.686;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1519,168,0
chrXVI	291194	.	C	T	1129	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1424;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=24.02;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1162,123,0
chrXVI	292086	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=20.60;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1681,189,0
chrXVI	292393	.	G	C	1611	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4743;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.92;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1644,180,0
chrXVI	292465	.	G	A	1618	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=22.79;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1651,177,0
chrXVI	292485	.	T	A	1013	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.09;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1046,114,0
chrXVI	292503	.	C	G	1041	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=17.07;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1074,120,0
chrXVI	292638	.	C	T	2250	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0168;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=22.28;SB=-1.317e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2283,243,0
chrXVI	292699	.	C	G	2543	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.2571;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.99;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2576,282,0
chrXVI	292958	.	T	A	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=4.482;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=55.61;MQ0=0;MQRankSum=-0.538;QD=17.87;ReadPosRankSum=1.692;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1588,168,0
chrXVI	292964	.	A	G	1638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;MQRankSum=-1.620;QD=17.43;ReadPosRankSum=1.658;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1671,180,0
chrXVI	293051	.	G	A	2104	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.6086;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=20.04;SB=-1.259e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2137,228,0
chrXVI	293369	.	A	G	2428	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=25.03;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2461,267,0
chrXVI	293816	.	G	A	2089	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.7016;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=22.46;SB=-1.147e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2122,234,0
chrXVI	294083	.	G	A	1558	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.47;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1591,174,0
chrXVI	294452	.	A	G	2394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.270;QD=22.58;ReadPosRankSum=1.699;SB=-1.199e+03	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2427,276,0
chrXVI	294866	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2989;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.648;QD=19.28;ReadPosRankSum=-1.394;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1614,160,0
chrXVI	294899	.	T	C	1246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;MQRankSum=0.568;QD=19.78;ReadPosRankSum=1.509;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1279,123,0
chrXVI	295094	.	G	T	1716	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=23.51;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1749,186,0
chrXVI	295127	.	C	T	1393	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;DP=63;Dels=0.00;FS=3.300;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.621;QD=22.11;ReadPosRankSum=0.447;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1426,159,0
chrXVI	295177	.	G	A	1796	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.5635;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.03;SB=-9.950e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1829,195,0
chrXVI	295316	.	A	G	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.072;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=0.756;QD=19.65;ReadPosRankSum=1.586;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1428,159,0
chrXVI	295393	.	C	T	899	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=17.98;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:932,102,0
chrXVI	295493	.	T	C	1236	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=17.91;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1269,141,0
chrXVI	295562	.	C	T	1166	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=8.1584;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=19.43;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1199,132,0
chrXVI	295831	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=53.47;MQ0=0;QD=18.56;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1221,135,0
chrXVI	295852	.	T	C	898	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.24;MQ0=0;QD=14.97;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:931,105,0
chrXVI	295860	.	T	G	864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.15;MQ0=0;MQRankSum=-0.793;QD=14.64;ReadPosRankSum=1.674;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:897,99,0
chrXVI	295874	.	T	G	746	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.79;MQ0=0;QD=13.09;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:87:779,87,0
chrXVI	295921	.	G	A	949	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=16.08;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:982,102,0
chrXVI	295944	.	A	G	972	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=15.68;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1005,111,0
chrXVI	295959	.	T	C	1135	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.45;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1168,129,0
chrXVI	295997	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=17.77;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1472,156,0
chrXVI	296018	.	A	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=17.47;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1448,165,0
chrXVI	296054	.	C	T	1764	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=21.00;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1797,192,0
chrXVI	296144	.	A	G	996	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=17.17;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1029,117,0
chrXVI	296178	.	C	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.55;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1128,120,0
chrXVI	296192	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.91;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1307,144,0
chrXVI	296298	.	G	A	2082	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.0832;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=23.39;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2115,222,0
chrXVI	296330	.	C	T	1967	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=56.95;MQ0=0;QD=20.49;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2000,216,0
chrXVI	296420	.	C	G	2210	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=7.6765;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=19.73;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,108:112:99:2243,249,0
chrXVI	296498	.	C	G	1757	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=5.9089;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=19.74;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1790,198,0
chrXVI	296526	.	G	A	1482	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.03;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1515,162,0
chrXVI	297234	.	C	T	1466	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=8.9058;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=16.11;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1499,162,0
chrXVI	297484	.	T	A	2785	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.3220;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.33;SB=-1.777e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2818,297,0
chrXVI	297634	.	T	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.69;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1620,171,0
chrXVI	297828	.	A	G	1804	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=15.5720;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=17.69;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,100:102:99:1837,207,0
chrXVI	298155	.	T	C	1539	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.265;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=7.5057;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=1.651;QD=17.90;ReadPosRankSum=1.610;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:1,84:86:99:1572,153,0
chrXVI	298189	.	C	A	1395	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.85;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1428,156,0
chrXVI	298280	.	T	A	961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=10.792;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.386;QD=16.02;ReadPosRankSum=1.559;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:994,105,0
chrXVI	298357	.	T	A	1237	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.504;DP=76;Dels=0.00;FS=10.357;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.413;QD=16.28;ReadPosRankSum=1.550;SB=-1.540e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1270,138,0
chrXVI	298438	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.18;SB=-6.601e+01	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1304,135,0
chrXVI	298503	.	A	T	425	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-1.220;QD=15.74;ReadPosRankSum=1.605;SB=-6.586e-03	GT:AD:DP:GQ:PL	1/1:1,26:27:51:458,51,0
chrXVI	298521	.	G	A	293	PASS	AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=17.24;SB=-5.500e+01	GT:AD:DP:GQ:PL	1/1:0,17:17:36:326,36,0
chrXVI	298916	.	A	G	766	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=17.41;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:799,87,0
chrXVI	299549	.	A	G	1541	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=21.70;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1574,171,0
chrXVI	299678	.	G	T	1059	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=20.76;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1092,117,0
chrXVI	299735	.	A	T	754	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=37.4855;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=16.76;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:87:787,87,0
chrXVI	299769	.	T	A	899	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.73;SB=-5.280e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:932,99,0
chrXVI	299834	.	T	C	918	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.73;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:951,105,0
chrXVI	300071	.	C	T	1155	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.39;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1188,132,0
chrXVI	300401	.	T	C	1607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.256;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.689;QD=19.84;ReadPosRankSum=0.346;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1640,157,0
chrXVI	300467	.	C	T	940	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=17.74;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:973,102,0
chrXVI	300478	.	G	C	697	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=12.91;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:84:730,84,0
chrXVI	300724	.	T	C	1722	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8563;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.66;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1755,195,0
chrXVI	301121	.	G	A	1522	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.14;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1555,165,0
chrXVI	301187	.	A	G	1910	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.95;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1943,216,0
chrXVI	301260	.	T	C	2158	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7264;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=22.48;SB=-1.251e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2191,237,0
chrXVI	301308	.	C	T	2327	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.0099;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=23.04;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2360,252,0
chrXVI	301341	.	T	C	2079	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=8.1438;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=19.25;SB=-1.364e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2112,228,0
chrXVI	301444	.	T	C	1870	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=10.1322;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-0.525;QD=21.01;ReadPosRankSum=1.654;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1903,213,0
chrXVI	301533	.	A	T	1499	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.7761;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.72;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1532,168,0
chrXVI	301568	.	C	A	1885	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=20.49;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1918,201,0
chrXVI	301572	.	T	C	1751	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=18.63;SB=-1.173e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1784,201,0
chrXVI	301695	.	C	G	1919	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.09;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,89:91:99:1952,213,0
chrXVI	301772	.	T	C	1208	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.7458;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.03;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,64:67:99:1241,138,0
chrXVI	301952	.	A	G	2113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;MQRankSum=1.658;QD=22.01;ReadPosRankSum=1.695;SB=-1.156e+03	GT:AD:DP:GQ:PL	1/1:1,93:96:99:2146,237,0
chrXVI	302336	.	A	G	2001	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=22.48;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2034,219,0
chrXVI	302738	.	A	G	892	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.2762;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.58;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:925,102,0
chrXVI	303036	.	A	C	851	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=19.34;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:99:884,99,0
chrXVI	303354	.	C	T	1450	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=21.01;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1483,159,0
chrXVI	303378	.	C	T	1197	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.00;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1230,129,0
chrXVI	303450	.	G	A	1016	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.8834;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=17.22;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1049,114,0
chrXVI	303780	.	T	C	2283	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=23.06;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2316,255,0
chrXVI	303807	.	C	T	1948	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=23.19;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1981,210,0
chrXVI	303834	.	C	A	1671	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=21.99;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1704,183,0
chrXVI	304420	.	A	G	2464	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=20.2639;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.24;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2497,270,0
chrXVI	304561	.	T	C	2042	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=22.20;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,87:92:99:2075,225,0
chrXVI	304635	.	C	T	1750	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.8825;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.08;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1783,189,0
chrXVI	304734	.	A	T	2316	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.16;SB=-1.321e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2349,249,0
chrXVI	304831	.	A	G	1787	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=85;Dels=0.00;FS=2.926;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.043;QD=21.02;ReadPosRankSum=2.392;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1820,195,0
chrXVI	304895	.	T	C	892	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.74;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:925,102,0
chrXVI	304957	.	T	G	861	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.52;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:894,99,0
chrXVI	304984	.	A	G	1252	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.26;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1285,141,0
chrXVI	305273	.	G	A	664	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.42;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:75:697,75,0
chrXVI	305812	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=23.22;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1403,147,0
chrXVI	306198	.	A	T	3032	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.378;DP=138;Dels=0.00;FS=6.117;HaplotypeScore=9.2443;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=0.673;QD=21.97;ReadPosRankSum=2.306;SB=-1.863e+03	GT:AD:DP:GQ:PL	1/1:2,136:138:99:3065,324,0
chrXVI	306302	.	T	C	3821.01	PASS	AC=2;AF=1.00;AN=2;DP=170;Dels=0.00;FS=0.000;HaplotypeScore=9.6903;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=22.48;SB=-1.672e+03	GT:AD:DP:GQ:PL	1/1:0,170:170:99:3821,414,0
chrXVI	306430	.	A	G	2288	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=6.4614;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.00;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2321,255,0
chrXVI	306698	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.576;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.6124;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=-0.954;QD=21.79;ReadPosRankSum=1.654;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1972,219,0
chrXVI	306860	.	T	C	1386	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.5072;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.155;QD=23.10;ReadPosRankSum=1.617;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1419,159,0
chrXVI	307244	.	T	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=19.35;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1368,144,0
chrXVI	307685	.	C	T	900	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=19.57;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:933,99,0
chrXVI	307847	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=4.236;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-1.619;QD=21.33;ReadPosRankSum=1.619;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1334,150,0
chrXVI	308140	.	A	G	1928	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.68;SB=-9.490e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1961,216,0
chrXVI	308239	.	G	A	2130	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=10.6071;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.15;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2163,231,0
chrXVI	308420	.	A	G	2841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.338;DP=132;Dels=0.00;FS=15.688;HaplotypeScore=10.5807;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=-0.542;QD=21.52;ReadPosRankSum=3.298;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:4,127:132:99:2874,321,0
chrXVI	308487	.	A	T	2239	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=6.8331;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=21.32;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2272,243,0
chrXVI	308554	.	T	A	3159	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=21.06;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3192,345,0
chrXVI	308578	.	T	G	3026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=136;Dels=0.00;FS=8.484;HaplotypeScore=4.2832;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=1.706;QD=22.25;ReadPosRankSum=0.931;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:1,133:136:99:3059,333,0
chrXVI	308656	.	A	G	2463	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.9879;MLEAC=2;MLEAF=1.00;MQ=56.71;MQ0=0;QD=21.42;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2496,282,0
chrXVI	308669	.	G	A	2234	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=6.0882;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=20.50;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2267,246,0
chrXVI	308781	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=17.42;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1392,153,0
chrXVI	308785	.	G	T	1515	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=19.42;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1548,165,0
chrXVI	309089	.	G	T	1236	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.68;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1269,135,0
chrXVI	309206	.	G	T	775	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.1197;MLEAC=2;MLEAF=1.00;MQ=53.69;MQ0=0;QD=15.50;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:87:808,87,0
chrXVI	309787	.	T	C	954	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=8.3470;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;MQRankSum=-1.216;QD=20.30;ReadPosRankSum=1.511;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:987,114,0
chrXVI	310009	.	T	G	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.866;QD=20.12;ReadPosRankSum=0.400;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1079,120,0
chrXVI	310045	.	G	A	1306	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.6447;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.21;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1339,147,0
chrXVI	310159	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.94;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1380,150,0
chrXVI	310704	.	T	C	1403	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=1.359;QD=21.58;ReadPosRankSum=1.679;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1436,159,0
chrXVI	310789	.	C	T	976	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.27;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1009,111,0
chrXVI	310795	.	G	A	1075	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=52.69;MQ0=0;QD=16.04;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1108,117,0
chrXVI	310918	.	T	C	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;DP=71;Dels=0.00;FS=2.788;HaplotypeScore=7.4890;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=0.088;QD=20.69;ReadPosRankSum=2.344;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1502,165,0
chrXVI	310970	.	A	C	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.844;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.302;QD=23.71;ReadPosRankSum=1.622;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1527,165,0
chrXVI	311025	.	T	C	996	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=15.56;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1029,114,0
chrXVI	311060	.	G	A	1106	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=55.73;MQ0=0;QD=19.40;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1139,123,0
chrXVI	311229	.	T	C	1494	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=6.661;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;MQRankSum=0.120;QD=16.24;ReadPosRankSum=2.369;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1527,171,0
chrXVI	311232	.	A	C	1572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;MQRankSum=0.758;QD=16.37;ReadPosRankSum=1.696;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1605,177,0
chrXVI	311427	.	G	A	1208	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=14.55;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1241,138,0
chrXVI	311442	.	C	T	1271	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.8915;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=15.13;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1304,141,0
chrXVI	311937	.	T	A	1008	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.16;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1041,111,0
chrXVI	312483	.	G	T	2988	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=20.33;SB=-1.784e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3021,324,0
chrXVI	312486	.	T	C	2792	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;DP=153;Dels=0.00;FS=5.815;HaplotypeScore=3.3430;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;MQRankSum=1.415;QD=18.25;ReadPosRankSum=2.875;SB=-1.758e+03	GT:AD:DP:GQ:PL	1/1:3,150:153:99:2825,315,0
chrXVI	312657	.	A	T	1137	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.06;SB=-3.660e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1170,123,0
chrXVI	312873	.	T	C	2123	filter	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=18.79;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2156,240,0
chrXVI	312892	.	T	A	2079	filter	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=19.80;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2112,225,0
chrXVI	313008	.	C	T	605	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=23.27;SB=-6.520e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:69:638,69,0
chrXVI	313092	.	A	G	650	filter	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=25.00;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,26:26:75:683,75,0
chrXVI	313228	.	C	T	1106	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.58;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1139,123,0
chrXVI	313494	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.74;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2051,219,0
chrXVI	313832	.	G	A	2482	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=11.6199;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.77;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2515,270,0
chrXVI	314011	.	G	A	1183	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=21.12;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1216,129,0
chrXVI	314083	.	C	G	1093	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.62;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1126,123,0
chrXVI	314329	.	T	C	834	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=18.13;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:96:867,96,0
chrXVI	314443	.	A	G	1688	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.190;DP=76;Dels=0.00;FS=7.059;HaplotypeScore=5.1388;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=-1.347;QD=22.21;ReadPosRankSum=2.385;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1721,186,0
chrXVI	315182	.	T	C	1898	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;DP=86;Dels=0.00;FS=2.552;HaplotypeScore=5.9283;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;MQRankSum=2.871;QD=22.07;ReadPosRankSum=2.895;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:3,83:86:99:1931,168,0
chrXVI	315877	.	C	T	1762	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.49;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1795,192,0
chrXVI	315973	.	G	A	2493	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.1133;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.52;SB=-1.339e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2526,261,0
chrXVI	316580	.	T	C	1970	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.39;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2003,219,0
chrXVI	316728	.	A	G	1660	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.74;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1693,189,0
chrXVI	316765	.	G	A	1342	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=8.2592;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.74;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1375,147,0
chrXVI	316953	.	A	G	1324	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=20.69;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1357,153,0
chrXVI	317394	.	C	A	1257	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=19.05;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1290,141,0
chrXVI	317528	.	A	G	2669	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=22.43;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2702,297,0
chrXVI	317583	.	T	C	2045	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=119;Dels=0.00;FS=3.395;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=46.25;MQ0=0;MQRankSum=-0.998;QD=17.18;ReadPosRankSum=1.556;SB=-1.473e+03	GT:AD:DP:GQ:PL	1/1:1,117:119:99:2078,225,0
chrXVI	317602	.	G	A	1870	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=41.65;MQ0=0;QD=17.31;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1903,201,0
chrXVI	317619	.	G	C	1152	SnpCluster	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=37.08;MQ0=0;QD=12.39;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1185,129,0
chrXVI	317621	.	A	G	1097	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=12.47;SB=-1.200e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1130,126,0
chrXVI	317622	.	G	A	1098	SnpCluster	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=35.34;MQ0=0;QD=12.48;SB=-1.211e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1131,126,0
chrXVI	317677	.	C	T	1529	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=21.24;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1562,165,0
chrXVI	318016	.	T	C	1776	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7225;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=20.18;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,85:88:99:1809,201,0
chrXVI	318049	.	C	T	1942	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=22.85;SB=-1.136e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1975,207,0
chrXVI	318072	.	T	G	1778	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5721;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;MQRankSum=0.877;QD=21.95;ReadPosRankSum=1.689;SB=-9.750e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1811,195,0
chrXVI	318113	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.223;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=6.2222;MLEAC=2;MLEAF=1.00;MQ=55.43;MQ0=0;MQRankSum=1.274;QD=18.62;ReadPosRankSum=1.376;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1299,123,0
chrXVI	318145	.	G	A	1445	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=23.69;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1478,162,0
chrXVI	318169	.	G	A	1890	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=23.33;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1923,204,0
chrXVI	318198	.	C	T	1983	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=21.55;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2016,216,0
chrXVI	318241	.	T	C	1726	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.5124;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;QD=18.56;SB=-1.033e+03	GT:AD:DP:GQ:PL	1/1:0,91:93:99:1759,192,0
chrXVI	318253	.	C	A	1510	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=18.64;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1543,165,0
chrXVI	318508	.	G	A	1448	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=18.81;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1481,156,0
chrXVI	319997	.	A	C	984	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.29;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1017,111,0
chrXVI	320294	.	G	A	1239	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.12;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1272,135,0
chrXVI	320399	.	C	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.86;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1432,153,0
chrXVI	320783	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.31;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1353,147,0
chrXVI	321010	.	T	C	698	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=18.37;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,36:38:78:731,78,0
chrXVI	321586	.	C	T	1482	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.2848;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=17.64;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1515,165,0
chrXVI	321635	.	A	G	1046	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=-1.687;QD=13.58;ReadPosRankSum=1.687;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1079,117,0
chrXVI	321640	.	A	C	1078	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=14.00;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1111,123,0
chrXVI	321733	.	A	G	1145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.553;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.418;QD=19.74;ReadPosRankSum=1.613;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1178,129,0
chrXVI	321864	.	T	C	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=7.661;HaplotypeScore=5.4113;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-1.951;QD=19.16;ReadPosRankSum=2.388;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:2,77:81:99:1585,177,0
chrXVI	321923	.	C	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=21.87;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:70:99:1564,165,0
chrXVI	321964	.	G	C	1577	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=22.53;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,66:70:99:1610,174,0
chrXVI	322004	.	T	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=22.87;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1611,180,0
chrXVI	322106	.	A	G	1410	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.69;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1443,159,0
chrXVI	322300	.	A	T	2706	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=10.1727;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=1.594;QD=21.65;ReadPosRankSum=1.233;SB=-1.216e+03	GT:AD:DP:GQ:PL	1/1:1,124:125:99:2739,300,0
chrXVI	322652	.	A	G	3696.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=10.0887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=22.81;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:0,162:162:99:3696,402,0
chrXVI	323015	.	T	C	2284	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.68;MQ0=0;QD=21.35;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2317,255,0
chrXVI	323018	.	G	A	2266	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=22.22;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2299,246,0
chrXVI	323207	.	A	G	1629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=0.260;QD=20.36;ReadPosRankSum=1.646;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1662,183,0
chrXVI	323469	.	A	G	2271	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=21.63;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2304,258,0
chrXVI	323642	.	C	G	1345	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=20.38;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1378,156,0
chrXVI	323715	.	T	C	1733	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=19.69;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1766,195,0
chrXVI	323872	.	G	T	1620	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=17.23;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1653,174,0
chrXVI	323900	.	C	G	1564	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=15.96;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,97:98:99:1597,174,0
chrXVI	323982	.	C	T	1570	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=18.92;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1603,171,0
chrXVI	324018	.	C	T	1346	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.80;MQ0=0;QD=16.82;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1379,150,0
chrXVI	324025	.	T	G	1231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.60;MQ0=0;MQRankSum=-0.375;QD=16.64;ReadPosRankSum=1.639;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1264,138,0
chrXVI	324103	.	G	A	940	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=19.58;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:973,102,0
chrXVI	324148	.	T	C	666	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=15.14;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:699,78,0
chrXVI	324160	.	G	A	609	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=63.7895;MLEAC=2;MLEAF=1.00;MQ=48.29;MQ0=0;QD=16.46;SB=-2.370e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:69:642,69,0
chrXVI	324228	.	A	T	1018	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.82;MQ0=0;QD=19.96;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1051,120,0
chrXVI	324252	.	G	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=22.10;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1514,162,0
chrXVI	324280	.	G	T	1692	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.17;MQ0=0;QD=19.67;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1725,186,0
chrXVI	324298	.	A	T	1575	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=46.26;MQ0=0;MQRankSum=-0.260;QD=19.44;ReadPosRankSum=1.689;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1608,171,0
chrXVI	324348	.	G	A	762	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=42.4427;MLEAC=2;MLEAF=1.00;MQ=40.93;MQ0=0;QD=13.14;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:84:795,84,0
chrXVI	324375	.	A	G	354	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=8.43;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:42:387,42,0
chrXVI	324389	.	A	G	367	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=8.34;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:45:400,45,0
chrXVI	324393	.	G	C	346	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=34.71;MQ0=0;QD=7.86;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:42:379,42,0
chrXVI	324400	.	A	G	391	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=8.15;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:48:424,48,0
chrXVI	324468	.	C	T	1077	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=21.12;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1110,120,0
chrXVI	324519	.	G	A	928	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=21.58;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:961,111,0
chrXVI	325137	.	T	A	1726	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.967;QD=19.84;ReadPosRankSum=1.611;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1759,189,0
chrXVI	325353	.	G	A	1154	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.77;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1187,126,0
chrXVI	325408	.	C	T	1246	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.17;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1279,138,0
chrXVI	325464	.	C	T	1223	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=17.72;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1256,135,0
chrXVI	325583	.	C	G	802	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=15.73;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:93:835,93,0
chrXVI	325596	.	T	G	691	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=1.320;QD=16.45;ReadPosRankSum=1.485;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:81:724,81,0
chrXVI	325797	.	A	G	1054	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.52;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1087,120,0
chrXVI	325815	.	A	G	956	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=3.590;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=-0.650;QD=19.51;ReadPosRankSum=1.660;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:989,111,0
chrXVI	325850	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.115;DP=60;Dels=0.00;FS=2.643;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=1.236;QD=18.20;ReadPosRankSum=2.325;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:2,57:60:99:1125,123,0
chrXVI	325896	.	G	C	1559	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.93;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1592,174,0
chrXVI	326109	.	C	T	959	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=22.30;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:99:992,105,0
chrXVI	326160	.	T	C	1085	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.37;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1118,120,0
chrXVI	326171	.	A	G	1116	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.60;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1149,123,0
chrXVI	326203	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=18.69;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1285,138,0
chrXVI	326294	.	G	T	686	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.193;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=9.7973;MLEAC=2;MLEAF=1.00;MQ=45.12;MQ0=0;MQRankSum=-0.346;QD=8.27;ReadPosRankSum=2.424;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:3,77:83:90:719,90,0
chrXVI	326300	.	C	T	20.80	LowQual;filter	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.4927;MLEAC=2;MLEAF=1.00;MQ=44.13;MQ0=0;QD=0.25;SB=-6.388e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:6:52,6,0
chrXVI	326343	.	C	A	981	SnpCluster	AC=2;AF=1.00;AN=2;DP=70;Dels=0.04;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;QD=14.01;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1014,111,0
chrXVI	326346	.	G	A	939	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.04;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=42.88;MQ0=0;QD=13.61;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:972,105,0
chrXVI	326349	.	T	A	940	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=63;Dels=0.00;FS=3.369;HaplotypeScore=6.2321;MLEAC=2;MLEAF=1.00;MQ=43.47;MQ0=0;MQRankSum=-0.962;QD=14.92;ReadPosRankSum=1.677;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:973,102,0
chrXVI	326457	.	T	G	1187	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=23.27;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1220,135,0
chrXVI	326546	.	A	G	1013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=50;Dels=0.00;FS=7.245;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;MQRankSum=-1.609;QD=20.26;ReadPosRankSum=2.302;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:2,48:50:99:1046,117,0
chrXVI	326816	.	G	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.69;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1620,180,0
chrXVI	326955	.	T	G	1476	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1509,162,0
chrXVI	327045	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=0.730;QD=19.87;ReadPosRankSum=1.523;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1702,183,0
chrXVI	327318	.	A	G	1091	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=20.20;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1124,123,0
chrXVI	327524	.	A	G	1487	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.2644;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=18.13;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1520,165,0
chrXVI	327765	.	T	C	3728.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.665;DP=159;Dels=0.00;FS=0.000;HaplotypeScore=8.8980;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=-1.621;QD=23.45;ReadPosRankSum=1.710;SB=-1.777e+03	GT:AD:DP:GQ:PL	1/1:1,156:159:99:3728,408,0
chrXVI	327863	.	G	A	1895	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.53;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1928,213,0
chrXVI	327885	.	C	T	1870	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=22.53;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1903,198,0
chrXVI	328317	.	G	A	1258	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=21.69;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1291,138,0
chrXVI	329027	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=21.49;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:1000,111,0
chrXVI	329095	.	G	A	26.09	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;DP=42;Dels=0.02;FS=13.358;HaplotypeScore=6.2658;MLEAC=1;MLEAF=0.500;MQ=52.40;MQ0=0;MQRankSum=1.024;QD=0.62;ReadPosRankSum=1.955;SB=-1.731e+02	GT:AD:DP:GQ:PL	0/1:2,38:41:15:56,0,15
chrXVI	329096	.	A	G	36.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.466;DP=42;Dels=0.05;FS=0.000;HaplotypeScore=6.4102;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;MQRankSum=0.844;QD=0.88;ReadPosRankSum=0.311;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:1,38:40:9:69,9,0
chrXVI	329147	.	A	C	646	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.58;SB=-3.400e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:75:679,75,0
chrXVI	329164	.	A	G	659	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=19.97;SB=-3.250e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:75:692,75,0
chrXVI	329462	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=25.63;SB=-3.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1366,147,0
chrXVI	329486	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.28;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1373,147,0
chrXVI	329572	.	T	G	961	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=19.22;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:99:994,111,0
chrXVI	329584	.	C	G	1031	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=18.75;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1064,117,0
chrXVI	329617	.	G	A	1509	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=22.19;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1542,165,0
chrXVI	329749	.	A	T	1378	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.726;QD=21.87;ReadPosRankSum=1.676;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1411,150,0
chrXVI	330238	.	A	G	1115	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.04;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1148,126,0
chrXVI	330760	.	C	A	1159	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=23.65;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1192,129,0
chrXVI	330799	.	A	G	1537	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.94;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1570,177,0
chrXVI	331831	.	T	C	2299	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;DP=109;Dels=0.00;FS=10.228;HaplotypeScore=7.8208;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-1.637;QD=21.09;ReadPosRankSum=2.403;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:2,104:109:99:2332,252,0
chrXVI	331838	.	C	T	2354	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=22.85;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,101:103:99:2387,252,0
chrXVI	331845	.	C	T	2040	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=22.42;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2073,219,0
chrXVI	331899	.	T	A	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=89;Dels=0.00;FS=3.159;HaplotypeScore=7.7996;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;MQRankSum=-0.331;QD=19.84;ReadPosRankSum=1.615;SB=-1.105e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1799,195,0
chrXVI	331974	.	C	T	2009	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=21.37;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2042,222,0
chrXVI	331976	.	G	T	2004	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=20.87;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2037,225,0
chrXVI	332036	.	C	T	1480	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.40;MQ0=0;QD=18.73;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1513,159,0
chrXVI	332562	.	C	T	1165	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=17.65;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1198,126,0
chrXVI	332646	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=18.33;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1408,156,0
chrXVI	332811	.	T	C	1037	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=17.58;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1070,120,0
chrXVI	332822	.	A	G	1263	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.1729;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.43;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1296,141,0
chrXVI	332928	.	C	T	903	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.02;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:936,99,0
chrXVI	333065	.	T	C	1501	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=3.195;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-1.588;QD=15.64;ReadPosRankSum=1.696;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:1,95:96:99:1534,174,0
chrXVI	333067	.	G	C	1573	SnpCluster	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;QD=16.05;SB=-1.122e+03	GT:AD:DP:GQ:PL	1/1:0,93:98:99:1606,177,0
chrXVI	333072	.	G	A	1626	SnpCluster	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=47.55;MQ0=0;QD=15.79;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1659,183,0
chrXVI	333103	.	T	C	2068	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=15.79;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2101,234,0
chrXVI	333181	.	T	C	1838	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-1.433;QD=22.41;ReadPosRankSum=1.433;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:1,80:82:99:1871,210,0
chrXVI	333918	.	C	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.42;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2157,234,0
chrXVI	334207	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=20.01;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:0,67:69:99:1414,153,0
chrXVI	334494	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.445;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=1.485;QD=20.88;ReadPosRankSum=1.650;SB=-4.630e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:910,102,0
chrXVI	334546	.	T	C	897	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.39;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:930,102,0
chrXVI	334619	.	T	C	845	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.694;DP=43;Dels=0.00;FS=2.681;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.977;QD=19.65;ReadPosRankSum=2.837;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:3,40:43:99:878,99,0
chrXVI	334710	.	A	G	1803	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.72;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1836,210,0
chrXVI	334746	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.36;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1464,162,0
chrXVI	335020	.	C	T	2628	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=55.64;MQ0=0;QD=22.85;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2661,282,0
chrXVI	335037	.	A	G	2250	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=21.03;SB=-1.058e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2283,252,0
chrXVI	335267	.	C	T	2696	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.10;SB=-1.261e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2729,288,0
chrXVI	335400	.	G	A	2064	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=9.8705;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=19.85;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2097,231,0
chrXVI	335412	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.280;DP=87;Dels=0.00;FS=2.709;HaplotypeScore=3.1222;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;MQRankSum=0.467;QD=20.00;ReadPosRankSum=2.393;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:2,85:87:99:1773,198,0
chrXVI	335468	.	T	C	1273	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=19.58;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1306,144,0
chrXVI	335498	.	A	G	900	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;MQRankSum=-1.155;QD=16.67;ReadPosRankSum=1.668;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:933,102,0
chrXVI	335609	.	C	G	2377	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=20.67;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2410,267,0
chrXVI	335909	.	T	C	1843	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;MQRankSum=0.483;QD=21.43;ReadPosRankSum=1.692;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1876,213,0
chrXVI	336445	.	C	T	1172	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.0159;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=16.99;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1205,126,0
chrXVI	336466	.	G	A	1011	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.04;MQ0=0;QD=14.04;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1044,111,0
chrXVI	336493	.	A	C	779	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=11.80;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:87:812,87,0
chrXVI	336494	.	T	C	774	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.27;MQ0=0;QD=11.73;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:87:807,87,0
chrXVI	336495	.	T	C	774	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.86;MQ0=0;QD=11.55;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:87:807,87,0
chrXVI	336514	.	T	C	774	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.58;MQ0=0;QD=10.32;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:90:807,90,0
chrXVI	336526	.	C	A	930	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=39.49;MQ0=0;QD=12.24;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:963,105,0
chrXVI	336590	.	G	A	1670	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=21.41;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1703,183,0
chrXVI	336865	.	T	A	1294	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=45.22;MQ0=0;QD=19.61;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1327,144,0
chrXVI	337020	.	C	T	2139	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=9.4874;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.39;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2172,231,0
chrXVI	337348	.	C	G	1897	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=17.90;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,104:106:99:1930,210,0
chrXVI	337437	.	C	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.23;SB=-1.790e+02	GT:AD:DP:GQ:PL	1/1:0,57:60:99:1328,144,0
chrXVI	337571	.	C	G	1203	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.87;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1236,141,0
chrXVI	337733	.	G	A	1928	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.10;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1961,204,0
chrXVI	338336	.	G	A	2762	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.40;MQ0=0;QD=21.92;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2795,300,0
chrXVI	338339	.	T	C	2551	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.26;MQ0=0;QD=19.62;SB=-1.265e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2584,282,0
chrXVI	338417	.	C	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=20.05;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1677,180,0
chrXVI	338448	.	C	T	1565	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=22.36;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1598,171,0
chrXVI	338466	.	T	C	1357	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=21.20;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1390,153,0
chrXVI	338509	.	C	T	690	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=16.83;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:78:723,78,0
chrXVI	338638	.	C	A	1017	SnpCluster	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;QD=13.38;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1050,114,0
chrXVI	338640	.	A	T	1000	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=30.52;MQ0=0;QD=13.70;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1033,108,0
chrXVI	338646	.	G	A	903	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;QD=12.37;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:936,102,0
chrXVI	338654	.	A	T	940	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.63;MQ0=0;QD=12.37;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:973,105,0
chrXVI	338673	.	C	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=11.76;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1044,117,0
chrXVI	338681	.	T	C	1135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=39.91;MQ0=0;MQRankSum=-0.362;QD=12.47;ReadPosRankSum=1.085;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1168,123,0
chrXVI	338702	.	C	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=6.8831;MLEAC=2;MLEAF=1.00;MQ=42.44;MQ0=0;QD=12.32;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1265,141,0
chrXVI	338828	.	T	C	1189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=29.6697;MLEAC=2;MLEAF=1.00;MQ=48.71;MQ0=0;MQRankSum=0.163;QD=20.50;ReadPosRankSum=1.667;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:1,52:58:99:1222,135,0
chrXVI	338845	.	A	G	769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=41;Dels=0.00;FS=4.559;HaplotypeScore=35.2175;MLEAC=2;MLEAF=1.00;MQ=45.44;MQ0=0;MQRankSum=-0.173;QD=18.76;ReadPosRankSum=1.646;SB=-2.530e+02	GT:AD:DP:GQ:PL	1/1:1,39:41:90:802,90,0
chrXVI	338922	.	T	C	652	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.55;MQ0=0;QD=19.18;SB=-2.390e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:75:685,75,0
chrXVI	338931	.	T	C	635	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.75;MQ0=0;QD=17.64;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:75:668,75,0
chrXVI	338936	.	T	G	534	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.64;MQ0=0;QD=15.71;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:66:567,66,0
chrXVI	338964	.	A	G	725	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=15.10;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:87:758,87,0
chrXVI	339046	.	T	C	967	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=15.11;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1000,111,0
chrXVI	339050	.	G	A	1024	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;QD=15.75;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1057,111,0
chrXVI	339101	.	T	C	1605	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.24;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1638,183,0
chrXVI	339108	.	T	G	1696	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5518;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=18.84;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,87:90:99:1729,192,0
chrXVI	339114	.	T	C	1702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=89;Dels=0.00;FS=3.583;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;MQRankSum=0.331;QD=19.12;ReadPosRankSum=1.693;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:1,88:89:99:1735,186,0
chrXVI	339210	.	T	C	977	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.745;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;MQRankSum=0.577;QD=21.71;ReadPosRankSum=1.655;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1010,114,0
chrXVI	339231	.	G	T	1068	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.63;MQ0=0;QD=22.25;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1101,120,0
chrXVI	339241	.	C	T	1038	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.01;MQ0=0;QD=21.62;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1071,117,0
chrXVI	339318	.	C	T	927	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.00;MQ0=0;QD=20.15;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:960,105,0
chrXVI	339322	.	C	T	1008	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;QD=21.91;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1041,111,0
chrXVI	339418	.	T	A	1235	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-1.102;QD=22.45;ReadPosRankSum=1.606;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1268,138,0
chrXVI	339477	.	C	T	1002	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=20.87;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1035,117,0
chrXVI	339485	.	T	C	944	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=22.48;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:977,111,0
chrXVI	339486	.	G	A	973	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.90;MQ0=0;QD=23.17;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1006,111,0
chrXVI	339516	.	T	A	973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;DP=45;Dels=0.00;FS=3.090;HaplotypeScore=5.7153;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-0.028;QD=21.62;ReadPosRankSum=2.341;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:1006,111,0
chrXVI	339599	.	C	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=36.87;MQ0=0;QD=18.58;SB=-4.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1259,147,0
chrXVI	339621	.	A	T	38.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=4.694;HaplotypeScore=50.3226;MLEAC=2;MLEAF=1.00;MQ=36.11;MQ0=0;MQRankSum=-1.423;QD=0.70;ReadPosRankSum=1.670;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:9:71,9,0
chrXVI	339655	.	T	C	594	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=44.49;MQ0=0;QD=11.88;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:69:627,69,0
chrXVI	339697	.	A	C	588	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;QD=15.47;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:69:621,69,0
chrXVI	339729	.	C	G	740	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.4938;MLEAC=2;MLEAF=1.00;MQ=60.46;MQ0=0;QD=16.82;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,42:44:87:773,87,0
chrXVI	339846	.	A	G	902	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=5.7334;MLEAC=2;MLEAF=1.00;MQ=39.59;MQ0=0;MQRankSum=-1.213;QD=15.03;ReadPosRankSum=1.675;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:935,105,0
chrXVI	339872	.	T	C	1114	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=14.85;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1147,129,0
chrXVI	339873	.	C	T	1163	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=30.24;MQ0=0;QD=15.51;SB=-1.037e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1196,132,0
chrXVI	339913	.	A	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=98.5838;MLEAC=2;MLEAF=1.00;MQ=31.92;MQ0=0;QD=12.47;SB=-1.243e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:1617,177,0
chrXVI	339921	.	C	T	1835	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=6.5102;MLEAC=2;MLEAF=1.00;MQ=36.72;MQ0=0;QD=12.32;SB=-1.220e+03	GT:AD:DP:GQ:PL	1/1:0,149:149:99:1868,207,0
chrXVI	340045	.	C	T	854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.529;DP=51;Dels=0.00;FS=4.523;HaplotypeScore=4.1013;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;MQRankSum=-0.442;QD=16.75;ReadPosRankSum=1.597;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:96:887,96,0
chrXVI	340150	.	G	A	890	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.78;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:923,102,0
chrXVI	340194	.	T	C	1022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.274;DP=56;Dels=0.00;FS=7.104;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.110;QD=18.25;ReadPosRankSum=2.141;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1055,117,0
chrXVI	340525	.	A	G	1413	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;DP=71;Dels=0.00;FS=3.399;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=-1.485;QD=19.90;ReadPosRankSum=1.683;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1446,159,0
chrXVI	340564	.	A	G	1763	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=22.60;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1796,195,0
chrXVI	340597	.	C	T	2079	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=23.90;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2112,228,0
chrXVI	340795	.	G	A	1908	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5015;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=0.102;QD=22.19;ReadPosRankSum=1.488;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:1,85:86:99:1941,199,0
chrXVI	340831	.	G	T	1169	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=22.06;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1202,126,0
chrXVI	341001	.	C	A	3373.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=1.8633;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.95;SB=-1.312e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3373,360,0
chrXVI	341092	.	C	G	1587	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=22.04;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1620,177,0
chrXVI	341213	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.75;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1376,147,0
chrXVI	341227	.	C	T	1398	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=19.69;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1431,159,0
chrXVI	341242	.	C	T	1455	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=20.49;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1488,156,0
chrXVI	341346	.	C	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9049;MLEAC=2;MLEAF=1.00;MQ=46.46;MQ0=0;QD=20.45;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1403,153,0
chrXVI	341476	.	C	T	1291	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.93;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1324,144,0
chrXVI	341479	.	G	A	1215	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=16.64;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1248,132,0
chrXVI	341533	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=15.72;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1039,117,0
chrXVI	341587	.	G	A	1768	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.38;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1801,192,0
chrXVI	341647	.	G	A	1667	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.86;MQ0=0;QD=19.16;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1700,180,0
chrXVI	341668	.	T	C	1363	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;MQRankSum=-1.411;QD=14.05;ReadPosRankSum=1.696;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1396,153,0
chrXVI	341680	.	G	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.59;MQ0=0;QD=13.84;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1375,150,0
chrXVI	341700	.	C	T	1077	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.39;MQ0=0;QD=11.10;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1110,120,0
chrXVI	341712	.	C	A	859	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.80;MQ0=0;QD=8.86;SB=-7.360e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:93:892,93,0
chrXVI	341720	.	G	A	783	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2798;MLEAC=2;MLEAF=1.00;MQ=37.59;MQ0=0;QD=9.55;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:87:816,87,0
chrXVI	341743	.	G	T	620	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.95;MQ0=0;QD=9.39;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:69:653,69,0
chrXVI	341776	.	G	C	1027	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;QD=15.80;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1060,117,0
chrXVI	342058	.	G	A	1343	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;QD=13.99;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1376,150,0
chrXVI	342103	.	G	A	1827	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.986;DP=85;Dels=0.00;FS=7.533;HaplotypeScore=6.1007;MLEAC=2;MLEAF=1.00;MQ=45.19;MQ0=0;MQRankSum=1.290;QD=21.49;ReadPosRankSum=1.928;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:2,83:85:99:1860,201,0
chrXVI	342316	.	C	T	947	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=49.41;MQ0=0;QD=15.78;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:980,108,0
chrXVI	342328	.	A	T	826	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=47.83;MQ0=0;QD=15.58;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:93:859,93,0
chrXVI	342335	.	G	C	892	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=14.39;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:925,102,0
chrXVI	342433	.	A	G	1602	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.3672;MLEAC=2;MLEAF=1.00;MQ=49.02;MQ0=0;MQRankSum=0.063;QD=19.30;ReadPosRankSum=1.690;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1635,180,0
chrXVI	342442	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=17.92;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1592,177,0
chrXVI	342457	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=48.22;MQ0=0;QD=14.20;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1311,150,0
chrXVI	342472	.	T	C	1214	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.2534;MLEAC=2;MLEAF=1.00;MQ=48.48;MQ0=0;QD=14.63;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1247,144,0
chrXVI	342505	.	G	A	1252	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=15.65;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1285,138,0
chrXVI	342586	.	T	C	1617	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=19.02;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,82:85:99:1650,183,0
chrXVI	342600	.	A	G	1820	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=3.7769;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=20.68;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1853,198,0
chrXVI	342681	.	G	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.96;MQ0=0;QD=17.62;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1319,141,0
chrXVI	342688	.	G	A	1142	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=15.86;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1175,129,0
chrXVI	342821	.	T	A	1544	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.41;MQ0=0;QD=23.39;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1577,165,0
chrXVI	342853	.	G	A	913	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=18.63;SB=-5.700e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:946,102,0
chrXVI	342883	.	C	T	480	SnpCluster	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.37;MQ0=0;QD=10.43;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:57:513,57,0
chrXVI	342886	.	A	T	492	SnpCluster	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.76;MQ0=0;QD=10.47;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:57:525,57,0
chrXVI	342888	.	G	C	464	SnpCluster	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=9.67;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:57:497,57,0
chrXVI	343066	.	C	T	1541	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=21.40;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1574,174,0
chrXVI	343093	.	T	C	1815	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=20.86;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1848,207,0
chrXVI	343108	.	A	G	1989	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=21.62;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2022,219,0
chrXVI	343157	.	C	T	1669	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.6439;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=20.11;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1702,183,0
chrXVI	343222	.	A	G	1156	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.12;MQ0=0;QD=18.95;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1189,132,0
chrXVI	343225	.	T	C	1136	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;QD=19.25;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1169,132,0
chrXVI	343246	.	C	A	851	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=18.11;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:884,99,0
chrXVI	343315	.	T	C	1019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=54;Dels=0.00;FS=3.093;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-1.534;QD=18.87;ReadPosRankSum=2.359;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:99:1052,117,0
chrXVI	343366	.	A	G	1329	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.453;QD=20.45;ReadPosRankSum=1.572;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1362,156,0
chrXVI	343471	.	C	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=22.14;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1716,183,0
chrXVI	343509	.	C	T	1767	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=22.95;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1800,192,0
chrXVI	343550	.	T	C	1591	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.10;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1624,174,0
chrXVI	343574	.	G	A	1401	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=20.91;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1434,153,0
chrXVI	343645	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=20.94;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1331,141,0
chrXVI	343763	.	G	A	1520	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=20.27;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1553,165,0
chrXVI	343797	.	G	A	1809	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=21.80;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1842,198,0
chrXVI	343822	.	T	C	1961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;MQRankSum=-1.128;QD=20.64;ReadPosRankSum=2.398;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1994,200,0
chrXVI	343827	.	C	T	1947	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=20.28;SB=-1.171e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1980,222,0
chrXVI	343891	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.6629;MLEAC=2;MLEAF=1.00;MQ=50.09;MQ0=0;QD=20.35;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1824,198,0
chrXVI	343930	.	A	T	1045	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.90;MQ0=0;QD=16.59;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1078,117,0
chrXVI	343939	.	G	A	914	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=15.49;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:947,102,0
chrXVI	343945	.	T	C	869	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;MQRankSum=-0.650;QD=13.58;ReadPosRankSum=1.624;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:902,102,0
chrXVI	343957	.	A	T	859	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=13.85;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:96:892,96,0
chrXVI	343959	.	C	A	920	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=31.12;MQ0=0;QD=14.15;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:953,99,0
chrXVI	343966	.	G	A	901	SnpCluster	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=34.07;MQ0=0;QD=13.06;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:934,102,0
chrXVI	344012	.	A	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=15.11;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1091,123,0
chrXVI	344032	.	A	T	1640	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1894;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;MQRankSum=1.215;QD=18.85;ReadPosRankSum=1.653;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1673,180,0
chrXVI	344073	.	T	C	1704	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=21.85;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1737,189,0
chrXVI	344143	.	C	T	1790	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.34;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1823,201,0
chrXVI	344281	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;QD=24.79;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1322,141,0
chrXVI	344324	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.59;MQ0=0;QD=20.04;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1155,126,0
chrXVI	344335	.	G	A	1226	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.35;MQ0=0;QD=19.46;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1259,132,0
chrXVI	344363	.	G	A	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.7199;MLEAC=2;MLEAF=1.00;MQ=49.71;MQ0=0;MQRankSum=1.575;QD=16.86;ReadPosRankSum=1.522;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1146,123,0
chrXVI	344507	.	G	C	863	SnpCluster	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=41.10;MQ0=0;QD=21.05;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:896,99,0
chrXVI	344514	.	A	G	724	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=20.11;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:84:757,84,0
chrXVI	344515	.	C	T	740	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.46;MQ0=0;QD=20.00;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:84:773,84,0
chrXVI	344571	.	T	C	890	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;QD=19.35;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:923,102,0
chrXVI	344589	.	C	T	1062	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=16.86;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1095,117,0
chrXVI	344602	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.382;DP=73;Dels=0.00;FS=2.835;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=46.44;MQ0=0;MQRankSum=-0.118;QD=16.49;ReadPosRankSum=2.382;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1237,138,0
chrXVI	344668	.	C	T	1474	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;QD=18.66;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1507,159,0
chrXVI	344682	.	C	G	1413	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=51.65;MQ0=0;QD=19.09;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1446,156,0
chrXVI	344772	.	C	A	908	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=21.62;SB=-5.040e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:941,102,0
chrXVI	344776	.	T	C	866	SnpCluster	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=20.62;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:899,99,0
chrXVI	344777	.	T	C	831	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.88;MQ0=0;MQRankSum=-1.056;QD=20.27;ReadPosRankSum=1.564;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:1,40:41:96:864,96,0
chrXVI	344783	.	G	A	909	SnpCluster	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=20.20;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:942,102,0
chrXVI	344833	.	G	A	500	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=26.7613;MLEAC=2;MLEAF=1.00;MQ=29.59;MQ0=0;QD=15.62;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:57:533,57,0
chrXVI	344837	.	C	T	495	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=27.7546;MLEAC=2;MLEAF=1.00;MQ=29.65;MQ0=0;QD=17.07;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:57:528,57,0
chrXVI	344869	.	C	A	604	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=29.55;MQ0=0;QD=17.76;SB=-1.860e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:69:637,69,0
chrXVI	344873	.	G	A	558	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=18.00;SB=-1.030e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:63:591,63,0
chrXVI	344882	.	T	C	488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.292;DP=31;Dels=0.00;FS=13.452;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;MQRankSum=-0.844;QD=15.74;ReadPosRankSum=2.292;SB=-1.290e+02	GT:AD:DP:GQ:PL	1/1:2,29:31:57:521,57,0
chrXVI	344884	.	C	T	482	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=15.55;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:57:515,57,0
chrXVI	344893	.	A	T	521	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=34.55;MQ0=0;QD=14.47;SB=-1.910e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:60:554,60,0
chrXVI	344973	.	C	T	2055	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=47.05;MQ0=0;QD=23.35;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2088,222,0
chrXVI	344976	.	T	C	1988	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=47.38;MQ0=0;QD=22.59;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2021,219,0
chrXVI	345029	.	A	T	1224	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=52.17;MQ0=0;QD=20.07;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1257,135,0
chrXVI	345040	.	T	A	1026	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=3.655;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;MQRankSum=-1.553;QD=17.39;ReadPosRankSum=1.673;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1059,114,0
chrXVI	345087	.	A	T	1116	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=19.24;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1149,123,0
chrXVI	345096	.	G	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.12;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1084,117,0
chrXVI	345162	.	T	C	946	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=18.92;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:979,111,0
chrXVI	345165	.	T	A	911	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.59;MQ0=0;QD=18.22;SB=-3.890e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:944,108,0
chrXVI	345182	.	G	A	933	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=17.94;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:966,108,0
chrXVI	345226	.	A	G	575	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.209;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.57;MQ0=0;MQRankSum=0.817;QD=10.85;ReadPosRankSum=1.667;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:69:608,69,0
chrXVI	345228	.	G	A	616	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.21;MQ0=0;QD=11.41;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:72:649,72,0
chrXVI	345248	.	A	G	614	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.57;MQ0=0;QD=10.23;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:72:647,72,0
chrXVI	345312	.	C	T	1419	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=20.27;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1452,153,0
chrXVI	345499	.	C	T	1737	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2045;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=22.86;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1770,186,0
chrXVI	345680	.	G	A	1231	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.98;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1264,135,0
chrXVI	345788	.	T	C	1329	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.4658;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.77;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1362,147,0
chrXVI	345830	.	T	C	1322	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=18.62;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1355,153,0
chrXVI	345878	.	A	G	1475	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=18.91;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1508,165,0
chrXVI	345899	.	G	A	1686	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=18.73;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1719,183,0
chrXVI	346054	.	G	A	1159	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=19.64;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1192,126,0
chrXVI	346252	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.10;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1299,141,0
chrXVI	346283	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-1.178;QD=19.11;ReadPosRankSum=-0.162;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1485,162,0
chrXVI	346505	.	A	G	774	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.81;MQ0=0;QD=16.47;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:807,90,0
chrXVI	346506	.	C	A	798	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=16.29;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:87:831,87,0
chrXVI	346610	.	G	T	1141	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=20.02;SB=-4.980e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1174,126,0
chrXVI	346751	.	A	C	1446	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.850;DP=75;Dels=0.00;FS=10.749;HaplotypeScore=5.7780;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.219;QD=19.28;ReadPosRankSum=2.850;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:3,71:75:99:1479,165,0
chrXVI	346838	.	T	C	792	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=16.50;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:90:825,90,0
chrXVI	346996	.	G	C	1364	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.36;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1397,156,0
chrXVI	347081	.	G	A	2116	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.98;MQ0=0;QD=24.32;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,86:87:99:2149,228,0
chrXVI	347119	.	T	C	2366	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.8735;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=0.084;QD=22.75;ReadPosRankSum=1.665;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:1,102:104:99:2399,270,0
chrXVI	347375	.	C	T	1327	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.522;HaplotypeScore=3.5089;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;MQRankSum=1.127;QD=21.06;ReadPosRankSum=1.402;SB=-7.930e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1360,141,0
chrXVI	347404	.	T	A	1181	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.90;MQ0=0;QD=17.12;SB=-2.920e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1214,129,0
chrXVI	347424	.	C	T	1506	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4328;MLEAC=2;MLEAF=1.00;MQ=38.87;MQ0=0;QD=16.92;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1539,165,0
chrXVI	347451	.	G	A	1587	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=15.71;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1620,174,0
chrXVI	347463	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.66;MQ0=0;QD=16.14;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1566,168,0
chrXVI	347483	.	C	G	1678	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.27;MQ0=0;QD=16.78;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,97:100:99:1711,189,0
chrXVI	347490	.	C	A	1745	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=15.72;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:0,104:111:99:1778,189,0
chrXVI	347569	.	G	A	2574	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=2.6961;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=19.95;SB=-1.712e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2607,291,0
chrXVI	347576	.	A	G	2510	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.9075;MLEAC=2;MLEAF=1.00;MQ=45.69;MQ0=0;QD=22.21;SB=-1.519e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2543,273,0
chrXVI	347624	.	C	T	1478	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.83;MQ0=0;QD=18.47;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1511,168,0
chrXVI	347635	.	T	A	1155	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=18.63;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1188,126,0
chrXVI	347642	.	T	A	787	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=0;QD=15.13;SB=-3.420e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:87:820,87,0
chrXVI	347651	.	T	G	527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=3.869;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.45;MQ0=0;MQRankSum=-1.644;QD=13.51;ReadPosRankSum=1.644;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:63:560,63,0
chrXVI	347661	.	T	C	530	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=13.95;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:66:563,66,0
chrXVI	347684	.	G	T	573	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.81;MQ0=0;QD=13.64;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:69:606,69,0
chrXVI	347719	.	T	A	622	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=3.840;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=35.68;MQ0=0;MQRankSum=-1.055;QD=13.52;ReadPosRankSum=1.657;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:78:655,78,0
chrXVI	347721	.	C	T	643	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=36.71;MQ0=0;QD=13.12;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:78:676,78,0
chrXVI	347757	.	C	G	883	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=0;QD=13.58;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,62:65:99:916,102,0
chrXVI	347765	.	T	A	884	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.73;MQ0=0;QD=15.24;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:917,102,0
chrXVI	347790	.	A	C	990	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.10;MQ0=0;QD=17.07;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1023,111,0
chrXVI	347867	.	T	C	1399	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=18.41;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1432,156,0
chrXVI	347869	.	G	A	1374	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=46.49;MQ0=0;QD=18.08;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1407,153,0
chrXVI	347953	.	G	C	1183	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;QD=17.92;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1216,144,0
chrXVI	347969	.	G	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.40;MQ0=0;QD=17.62;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1108,129,0
chrXVI	347977	.	T	G	913	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=38.15;MQ0=0;QD=17.23;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:946,111,0
chrXVI	347997	.	A	C	588	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.80;MQ0=0;QD=13.36;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:78:621,78,0
chrXVI	348017	.	C	T	331	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.77;MQ0=0;QD=11.82;SB=-2.500e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:45:364,45,0
chrXVI	348034	.	T	C	267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.583;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.00;MQ0=0;MQRankSum=-1.432;QD=11.61;ReadPosRankSum=1.583;SB=-1.440e+02	GT:AD:DP:GQ:PL	1/1:1,22:23:36:300,36,0
chrXVI	348038	.	T	C	276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.254;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.78;MQ0=0;MQRankSum=-0.952;QD=11.04;ReadPosRankSum=2.254;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:2,23:25:36:309,36,0
chrXVI	348050	.	A	C	374	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.24;MQ0=0;QD=12.90;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:48:407,48,0
chrXVI	348065	.	A	G	419	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=13.97;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:54:452,54,0
chrXVI	348076	.	G	C	480	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.81;MQ0=0;QD=11.71;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:60:513,60,0
chrXVI	348083	.	A	C	569	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=11.38;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:69:602,69,0
chrXVI	348090	.	T	C	582	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.12;MQ0=0;QD=11.19;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:72:615,72,0
chrXVI	348105	.	T	G	698	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.98;MQ0=0;QD=12.03;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:84:731,84,0
chrXVI	348127	.	G	T	1017	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=15.41;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1050,114,0
chrXVI	348228	.	G	A	910	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=18.96;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:943,102,0
chrXVI	348243	.	A	C	920	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.14;MQ0=0;QD=14.84;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:953,105,0
chrXVI	348254	.	T	G	771	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.32;MQ0=0;QD=11.68;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:93:804,93,0
chrXVI	348266	.	C	T	790	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.79;MQ0=0;QD=11.45;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:93:823,93,0
chrXVI	348267	.	C	T	775	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=11.07;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:93:808,93,0
chrXVI	348342	.	G	A	1253	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=45.42;MQ0=0;QD=15.86;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1286,144,0
chrXVI	348348	.	G	A	1203	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.38;MQ0=0;QD=15.62;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1236,138,0
chrXVI	348364	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=46.56;MQ0=0;QD=18.07;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1370,150,0
chrXVI	348393	.	T	C	1113	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=50.9747;MLEAC=2;MLEAF=1.00;MQ=41.96;MQ0=0;MQRankSum=-0.678;QD=16.13;ReadPosRankSum=1.582;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1146,126,0
chrXVI	348416	.	G	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;QD=12.97;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1045,117,0
chrXVI	348463	.	T	C	1519	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=50.43;MQ0=0;QD=18.52;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1552,174,0
chrXVI	348547	.	T	C	1068	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=63;Dels=0.00;FS=6.232;HaplotypeScore=6.4564;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;MQRankSum=-0.059;QD=16.95;ReadPosRankSum=2.372;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:2,61:63:99:1101,123,0
chrXVI	348646	.	A	G	1683	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;QD=22.44;SB=-9.140e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1716,192,0
chrXVI	348815	.	T	C	1300	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3002;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=18.57;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1333,150,0
chrXVI	348874	.	C	T	1094	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=17.93;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1127,120,0
chrXVI	348940	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.04;MQ0=0;QD=20.67;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1025,108,0
chrXVI	349558	.	A	G	1092	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=19.50;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1125,123,0
chrXVI	349570	.	C	T	1085	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.87;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1118,117,0
chrXVI	349717	.	G	C	803	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=20.59;SB=-3.750e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:93:836,93,0
chrXVI	349901	.	A	T	715	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.418;QD=21.67;ReadPosRankSum=1.628;SB=-1.960e+02	GT:AD:DP:GQ:PL	1/1:1,32:33:78:748,78,0
chrXVI	350090	.	T	A	1013	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=46.48;MQ0=0;MQRankSum=1.582;QD=22.02;ReadPosRankSum=1.657;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1046,114,0
chrXVI	350120	.	A	G	1778	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.47;MQ0=0;QD=26.54;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1811,195,0
chrXVI	350221	.	G	A	1643	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=22.82;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1676,186,0
chrXVI	350251	.	T	A	1747	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;MQRankSum=0.368;QD=22.69;ReadPosRankSum=2.322;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1780,189,0
chrXVI	350341	.	T	C	1447	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.12;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1480,162,0
chrXVI	350422	.	A	G	1268	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.52;MQ0=0;QD=18.65;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1301,144,0
chrXVI	350434	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;MQRankSum=-1.522;QD=16.27;ReadPosRankSum=1.627;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1107,123,0
chrXVI	350446	.	C	T	1084	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.52;MQ0=0;QD=18.37;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1117,117,0
chrXVI	350455	.	C	T	861	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.74;MQ0=0;QD=15.37;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:96:894,96,0
chrXVI	350476	.	C	T	878	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=15.14;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:96:911,96,0
chrXVI	350533	.	C	T	1516	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.69;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1549,168,0
chrXVI	350654	.	C	G	1637	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.99;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1670,183,0
chrXVI	350773	.	A	G	1635	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=20.70;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1668,189,0
chrXVI	350968	.	C	T	978	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.81;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1011,108,0
chrXVI	351032	.	T	C	1570	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.3500;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=20.39;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1603,180,0
chrXVI	351205	.	G	A	1038	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1876;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=16.48;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1071,114,0
chrXVI	351571	.	C	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7671;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.85;SB=-6.810e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1893,201,0
chrXVI	351921	.	C	T	2140	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=8.2450;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.58;SB=-1.349e+03	GT:AD:DP:GQ:PL	1/1:0,102:104:99:2173,231,0
chrXVI	352228	.	A	C	1782	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=4.243;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=-1.569;QD=20.96;ReadPosRankSum=0.346;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1815,198,0
chrXVI	352308	.	T	A	2301	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.2859;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.56;SB=-1.030e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2334,255,0
chrXVI	352479	.	C	T	2084	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.01;FS=0.000;HaplotypeScore=8.3495;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=18.61;SB=-1.277e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2117,225,0
chrXVI	352547	.	G	T	2406	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=24.30;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:2439,264,0
chrXVI	352602	.	G	A	1834	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=20.84;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1867,195,0
chrXVI	352604	.	T	G	1788	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.55;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1821,198,0
chrXVI	352768	.	A	G	3744.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;DP=170;Dels=0.00;FS=3.542;HaplotypeScore=6.1163;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=-0.199;QD=22.02;ReadPosRankSum=1.711;SB=-1.902e+03	GT:AD:DP:GQ:PL	1/1:1,164:170:99:3744,423,0
chrXVI	352962	.	A	G	1714	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1016;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;MQRankSum=-1.275;QD=18.84;ReadPosRankSum=1.618;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1747,195,0
chrXVI	352983	.	T	A	2014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=105;Dels=0.00;FS=5.441;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;MQRankSum=-0.973;QD=19.18;ReadPosRankSum=1.666;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:1,104:105:99:2047,222,0
chrXVI	353083	.	G	C	1920	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.7993;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.20;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1953,219,0
chrXVI	353172	.	T	C	1486	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.64;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1519,165,0
chrXVI	353391	.	G	C	736	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=16.73;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:84:769,84,0
chrXVI	353790	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=21.93;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1239,135,0
chrXVI	353939	.	G	A	1160	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=8.7969;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=18.41;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1193,129,0
chrXVI	354171	.	C	T	1589	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.4159;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.72;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1622,171,0
chrXVI	354217	.	G	A	1178	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.65;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1211,126,0
chrXVI	354379	.	G	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.01;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1618,174,0
chrXVI	354478	.	C	G	1223	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=19.41;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1256,138,0
chrXVI	354498	.	A	G	1063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.362;DP=56;Dels=0.00;FS=2.648;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=1.567;QD=18.98;ReadPosRankSum=2.362;SB=-4.950e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1096,120,0
chrXVI	354697	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.35;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1441,156,0
chrXVI	354729	.	A	G	1220	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.68;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1253,135,0
chrXVI	354954	.	T	C	1529	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=22.49;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1562,174,0
chrXVI	355090	.	T	C	1441	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=71;Dels=0.00;FS=6.340;HaplotypeScore=8.3837;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.793;QD=20.30;ReadPosRankSum=2.380;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1474,159,0
chrXVI	355440	.	A	G	1353	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.078;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.293;QD=20.82;ReadPosRankSum=1.626;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1386,156,0
chrXVI	355696	.	A	G	1749	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.10;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1782,198,0
chrXVI	355809	.	C	T	1237	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.1716;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=21.33;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1270,135,0
chrXVI	355953	.	A	G	1123	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.509;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6790;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;MQRankSum=-0.503;QD=18.11;ReadPosRankSum=1.676;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1156,126,0
chrXVI	356068	.	G	T	1399	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=17.27;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1432,153,0
chrXVI	356209	.	T	C	1232	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;DP=56;Dels=0.00;FS=6.193;HaplotypeScore=4.2864;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=0.837;QD=22.00;ReadPosRankSum=2.765;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:3,53:56:99:1265,138,0
chrXVI	356245	.	T	G	1323	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=56;Dels=0.00;FS=4.260;HaplotypeScore=4.1126;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.670;QD=23.62;ReadPosRankSum=1.670;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1356,150,0
chrXVI	356335	.	C	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.18;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1192,126,0
chrXVI	356402	.	A	G	973	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.774;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;MQRankSum=0.000;QD=15.69;ReadPosRankSum=1.621;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1006,111,0
chrXVI	356407	.	T	C	817	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=14.09;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:96:850,96,0
chrXVI	356553	.	G	A	1334	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.61;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1367,147,0
chrXVI	356805	.	G	A	2216	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.8735;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=24.35;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2249,237,0
chrXVI	356980	.	C	T	1222	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=22.22;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1255,138,0
chrXVI	357064	.	C	T	1621	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=22.21;SB=-8.810e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1654,174,0
chrXVI	357327	.	G	A	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;MQRankSum=-0.711;QD=21.85;ReadPosRankSum=-1.332;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1803,192,0
chrXVI	357364	.	T	C	1721	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;DP=81;Dels=0.00;FS=3.287;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=1.689;QD=21.25;ReadPosRankSum=1.433;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1754,195,0
chrXVI	357487	.	G	A	3215.99	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=8.1137;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=23.14;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3249,345,0
chrXVI	357568	.	C	T	2170	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=22.60;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2203,231,0
chrXVI	357673	.	A	G	1904	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=3.3962;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=20.92;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1937,213,0
chrXVI	357782	.	G	A	4594.01	PASS	AC=2;AF=1.00;AN=2;DP=206;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.30;SB=-1.800e+03	GT:AD:DP:GQ:PL	1/1:0,206:206:99:4594,495,0
chrXVI	357853	.	C	T	3648.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=14.1963;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.69;SB=-1.595e+03	GT:AD:DP:GQ:PL	1/1:0,151:154:99:3648,393,0
chrXVI	358093	.	C	T	2016	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=20.57;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,95:98:99:2049,216,0
chrXVI	358161	.	G	A	2036	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=90;Dels=0.00;FS=3.763;HaplotypeScore=6.4884;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.614;QD=22.62;ReadPosRankSum=1.181;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,87:90:99:2069,219,0
chrXVI	358375	.	A	T	1255	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.9827;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.836;QD=21.64;ReadPosRankSum=1.673;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1288,138,0
chrXVI	358537	.	A	G	1741	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=21.49;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1774,195,0
chrXVI	358961	.	C	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=18.16;SB=-4.710e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1050,114,0
chrXVI	359182	.	C	T	1418	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=19.97;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1451,159,0
chrXVI	359415	.	C	A	748	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=18.70;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:84:781,84,0
chrXVI	359418	.	G	A	773	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=38.70;MQ0=0;QD=18.40;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:87:806,87,0
chrXVI	359468	.	C	A	362	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.63;MQ0=0;QD=9.78;SB=-2.350e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:45:395,45,0
chrXVI	359574	.	T	A	799	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=46;Dels=0.00;FS=9.638;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.78;MQ0=0;MQRankSum=1.657;QD=17.37;ReadPosRankSum=1.657;SB=-1.140e+02	GT:AD:DP:GQ:PL	1/1:1,45:46:90:832,90,0
chrXVI	359596	.	G	A	795	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.46;MQ0=0;QD=17.28;SB=-1.730e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:828,87,0
chrXVI	359608	.	A	T	624	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.60;MQ0=0;QD=17.83;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:69:657,69,0
chrXVI	359680	.	G	T	1074	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.83;MQ0=0;QD=18.52;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1107,117,0
chrXVI	359694	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.12;MQ0=0;QD=19.08;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1464,156,0
chrXVI	359832	.	G	A	2430	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.7145;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=24.55;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2463,261,0
chrXVI	359877	.	A	C	1237	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=18.74;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1270,141,0
chrXVI	359878	.	A	G	1226	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=47.03;MQ0=0;QD=18.58;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1259,141,0
chrXVI	359890	.	T	A	1159	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=50.2845;MLEAC=2;MLEAF=1.00;MQ=45.72;MQ0=0;QD=17.04;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1192,132,0
chrXVI	359938	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.51;MQ0=0;QD=21.62;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1330,147,0
chrXVI	359983	.	A	C	1427	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.30;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1460,159,0
chrXVI	360040	.	T	C	1796	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=5.8902;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=23.63;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1829,198,0
chrXVI	360123	.	G	A	1848	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=54.42;MQ0=0;QD=17.11;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:1881,201,0
chrXVI	360124	.	A	C	1823	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=16.57;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1856,204,0
chrXVI	360191	.	C	T	2252	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.29;SB=-1.335e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2285,243,0
chrXVI	360607	.	T	C	1276	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.730;DP=72;Dels=0.00;FS=10.202;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;MQRankSum=-2.044;QD=17.72;ReadPosRankSum=2.873;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:3,68:72:99:1309,147,0
chrXVI	360991	.	A	T	1232	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=18.39;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1265,138,0
chrXVI	361001	.	G	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=16.69;SB=-7.150e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1268,141,0
chrXVI	361070	.	A	G	1879	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=20.65;SB=-1.102e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1912,213,0
chrXVI	361144	.	C	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=20.77;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1674,177,0
chrXVI	361530	.	T	C	800	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=18.60;SB=-2.180e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:833,90,0
chrXVI	361564	.	A	T	817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.255;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=51.15;MQ0=0;MQRankSum=-0.994;QD=17.76;ReadPosRankSum=3.255;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:4,42:46:90:850,90,0
chrXVI	361567	.	T	G	864	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.55;MQ0=0;QD=18.00;SB=-1.760e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:897,99,0
chrXVI	361590	.	C	T	1441	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=20.59;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1474,165,0
chrXVI	361661	.	C	T	1707	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.6888;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=21.07;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,77:81:99:1740,186,0
chrXVI	361807	.	A	G	1170	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;DP=54;Dels=0.00;FS=4.771;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;MQRankSum=-0.962;QD=21.67;ReadPosRankSum=1.668;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1203,132,0
chrXVI	361836	.	C	G	1019	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=16.98;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1052,117,0
chrXVI	361839	.	C	T	984	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.69;MQ0=0;QD=16.40;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1017,108,0
chrXVI	361856	.	A	G	784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=58;Dels=0.00;FS=5.518;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;MQRankSum=-0.213;QD=13.52;ReadPosRankSum=1.672;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:1,56:58:90:817,90,0
chrXVI	362269	.	G	C	2367	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=12.7978;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.23;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,111:117:99:2400,261,0
chrXVI	362462	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=8.1081;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.37;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1622,180,0
chrXVI	362546	.	T	C	1516	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.320;DP=77;Dels=0.00;FS=11.326;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.114;QD=19.69;ReadPosRankSum=2.353;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:2,74:77:99:1549,174,0
chrXVI	363066	.	T	G	1729	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=21.61;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1762,192,0
chrXVI	363218	.	T	C	1690	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.84;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1723,192,0
chrXVI	363919	.	T	C	2290	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-1.025;QD=23.37;ReadPosRankSum=1.697;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2323,252,0
chrXVI	364060	.	T	G	1554	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=19.67;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1587,177,0
chrXVI	364396	.	C	T	2632	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.1696;MLEAC=2;MLEAF=1.00;MQ=55.39;MQ0=0;QD=24.37;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2665,279,0
chrXVI	364707	.	A	G	1821	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=19.37;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1854,204,0
chrXVI	364729	.	A	G	1496	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.5481;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.420;QD=16.09;ReadPosRankSum=2.396;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:2,89:93:99:1529,171,0
chrXVI	364733	.	C	T	1584	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.7594;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=18.64;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1617,171,0
chrXVI	364979	.	T	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.3673;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=21.07;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1171,126,0
chrXVI	365276	.	G	A	1508	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=7.8342;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.85;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1541,165,0
chrXVI	365317	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;MQRankSum=-0.216;QD=20.94;ReadPosRankSum=2.372;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:2,61:64:99:1373,150,0
chrXVI	365386	.	G	A	1143	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=19.05;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1176,126,0
chrXVI	365514	.	C	T	1327	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.51;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1360,147,0
chrXVI	365764	.	C	G	1002	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.87;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1035,114,0
chrXVI	365920	.	T	C	998	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=18.83;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1031,117,0
chrXVI	366346	.	T	G	1569	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=-1.629;QD=23.07;ReadPosRankSum=1.629;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1602,180,0
chrXVI	366595	.	A	C	2836	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.6705;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=24.03;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2869,312,0
chrXVI	366708	.	C	T	2392	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=23.45;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2425,255,0
chrXVI	366909	.	G	T	2906	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.6537;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=22.88;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2939,312,0
chrXVI	367091	.	C	T	1381	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;QD=20.92;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1414,153,0
chrXVI	367109	.	T	C	1532	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.909;DP=77;Dels=0.00;FS=6.175;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.645;QD=19.90;ReadPosRankSum=2.909;SB=-1.000e+03	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1565,171,0
chrXVI	367289	.	C	T	1049	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=17.78;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1082,120,0
chrXVI	367511	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=20.17;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1364,150,0
chrXVI	367655	.	A	G	1115	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.22;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1148,126,0
chrXVI	367806	.	C	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.07;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1429,156,0
chrXVI	368095	.	G	A	1883	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3088;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.25;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1916,210,0
chrXVI	368135	.	C	T	1452	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.00;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1485,156,0
chrXVI	368308	.	G	A	1402	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.37;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1435,156,0
chrXVI	368462	.	G	A	1940	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.82;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1973,210,0
chrXVI	368540	.	C	T	1250	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.83;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1283,135,0
chrXVI	368620	.	G	A	1069	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=20.96;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1102,117,0
chrXVI	368629	.	A	T	871	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.48;MQ0=0;QD=18.15;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:96:904,96,0
chrXVI	368694	.	T	C	1256	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=17.69;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1289,141,0
chrXVI	368905	.	T	C	1114	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=19.89;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1147,123,0
chrXVI	368980	.	A	G	743	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;DP=43;Dels=0.00;FS=2.717;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.56;MQ0=0;MQRankSum=1.528;QD=17.28;ReadPosRankSum=2.336;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:2,41:43:87:776,87,0
chrXVI	369001	.	C	T	1071	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.83;SB=-7.470e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1104,117,0
chrXVI	369115	.	C	T	1463	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.17;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1496,162,0
chrXVI	369157	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.29;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1417,156,0
chrXVI	369300	.	C	T	683	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.03;SB=-3.410e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:75:716,75,0
chrXVI	369476	.	A	G	1745	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=81;Dels=0.00;FS=6.185;HaplotypeScore=6.3303;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.202;QD=21.54;ReadPosRankSum=2.389;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:2,79:81:99:1778,195,0
chrXVI	369748	.	G	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=22.28;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1080,120,0
chrXVI	369780	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.58;SB=-3.670e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1162,123,0
chrXVI	370280	.	A	G	1341	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.35;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1374,150,0
chrXVI	370319	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.8164;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=21.75;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1621,174,0
chrXVI	371029	.	C	T	1207	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=24.63;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1240,132,0
chrXVI	371406	.	G	A	1393	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.11;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1426,159,0
chrXVI	371706	.	T	C	1177	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=65;Dels=0.00;FS=3.369;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.302;QD=18.11;ReadPosRankSum=1.622;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,63:65:99:1210,138,0
chrXVI	371914	.	C	T	1924	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.64;SB=-9.070e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1957,210,0
chrXVI	372742	.	C	T	1834	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=22.64;SB=-9.830e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1867,198,0
chrXVI	373029	.	C	T	1620	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=18.00;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1653,174,0
chrXVI	373351	.	T	C	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;DP=52;Dels=0.00;FS=2.658;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;MQRankSum=0.432;QD=20.27;ReadPosRankSum=2.865;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:3,49:52:99:1087,120,0
chrXVI	373419	.	T	G	485	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;MQRankSum=-1.129;QD=10.78;ReadPosRankSum=1.955;SB=-1.270e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:60:518,60,0
chrXVI	373422	.	T	A	418	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=9.95;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:51:451,51,0
chrXVI	373522	.	T	C	1098	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.877;DP=57;Dels=0.00;FS=14.094;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.054;QD=19.26;ReadPosRankSum=2.877;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:3,54:57:99:1131,123,0
chrXVI	373847	.	A	G	985	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=21.41;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1018,114,0
chrXVI	373891	.	C	T	909	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=21.64;SB=-4.340e+02	GT:AD:DP:GQ:PL	1/1:0,39:42:99:942,99,0
chrXVI	373946	.	G	A	1922	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.60;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1955,210,0
chrXVI	374061	.	A	G	2262	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=11.1875;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.34;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2295,252,0
chrXVI	374156	.	G	T	1234	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.65;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1267,135,0
chrXVI	374261	.	C	T	1289	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.83;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1322,141,0
chrXVI	374282	.	T	C	1199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.296;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;MQRankSum=0.019;QD=18.73;ReadPosRankSum=1.910;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1232,138,0
chrXVI	374422	.	C	T	1365	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=18.20;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1398,153,0
chrXVI	375193	.	A	T	1847	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.333;DP=84;Dels=0.00;FS=2.714;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;MQRankSum=-0.220;QD=21.99;ReadPosRankSum=2.274;SB=-8.450e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1880,204,0
chrXVI	375203	.	C	T	1922	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=22.61;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1955,213,0
chrXVI	375375	.	T	A	1309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=75;Dels=0.00;FS=9.544;HaplotypeScore=5.6696;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.917;QD=17.45;ReadPosRankSum=2.383;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:2,73:75:99:1342,144,0
chrXVI	375533	.	G	A	2500	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.7223;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=21.74;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2533,273,0
chrXVI	375534	.	T	A	2561	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=22.87;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,111:112:99:2594,279,0
chrXVI	375693	.	G	A	1263	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=21.05;SB=-4.700e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1296,141,0
chrXVI	376113	.	C	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.8845;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=21.73;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1489,159,0
chrXVI	376180	.	A	G	1004	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=17.61;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1037,117,0
chrXVI	376312	.	G	A	1788	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7479;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=20.79;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1821,201,0
chrXVI	376755	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=24.10;SB=-9.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1720,183,0
chrXVI	377062	.	T	A	491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=34;Dels=0.00;FS=5.315;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;MQRankSum=1.427;QD=14.44;ReadPosRankSum=1.631;SB=-1.300e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:57:524,57,0
chrXVI	377330	.	A	G	494	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.64;MQ0=0;QD=17.03;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:60:527,60,0
chrXVI	377336	.	C	T	413	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.78;MQ0=0;QD=15.88;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:48:446,48,0
chrXVI	377648	.	C	T	1831	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1915;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=1;QD=22.89;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:80:99:1864,198,0
chrXVI	378124	.	T	C	2370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=129;Dels=0.00;FS=3.680;HaplotypeScore=7.7900;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=0.412;QD=18.37;ReadPosRankSum=1.705;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:1,125:129:99:2403,264,0
chrXVI	378130	.	C	A	2401	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=21.06;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2434,258,0
chrXVI	378223	.	C	T	1228	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=21.17;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1261,135,0
chrXVI	378249	.	C	T	813	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=15.63;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:90:846,90,0
chrXVI	378260	.	C	A	800	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=16.00;SB=-4.190e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:833,93,0
chrXVI	378492	.	T	C	1456	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=1.223;QD=21.41;ReadPosRankSum=1.630;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1489,168,0
chrXVI	378640	.	G	T	1263	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=23.83;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1296,138,0
chrXVI	378721	.	G	A	1316	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=18.03;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1349,144,0
chrXVI	378794	.	G	A	1395	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.092;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.0205;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.602;QD=15.16;ReadPosRankSum=-0.377;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1428,153,0
chrXVI	378927	.	T	C	260	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;QD=5.42;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:33:293,33,0
chrXVI	378939	.	C	T	365	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=7.60;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,47:48:45:398,45,0
chrXVI	378951	.	C	T	606	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.85;MQ0=0;QD=12.89;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,47:47:66:639,66,0
chrXVI	379018	.	C	T	1135	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.02;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1168,126,0
chrXVI	379192	.	T	C	1594	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=24.52;SB=-1.470e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1627,180,0
chrXVI	379218	.	G	A	1416	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.84;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1449,156,0
chrXVI	379241	.	G	C	1309	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.37;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1342,144,0
chrXVI	379335	.	C	G	1320	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=18.59;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1353,150,0
chrXVI	379347	.	T	C	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.685;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.5716;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;MQRankSum=0.356;QD=17.74;ReadPosRankSum=1.590;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1328,147,0
chrXVI	379460	.	C	T	734	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=49.40;MQ0=0;QD=8.95;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:81:767,81,0
chrXVI	379477	.	G	T	979	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8784;MLEAC=2;MLEAF=1.00;MQ=54.19;MQ0=0;QD=11.65;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1012,108,0
chrXVI	379573	.	C	T	1260	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.3945;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.26;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1293,144,0
chrXVI	379971	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.37;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1235,138,0
chrXVI	380250	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.10;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1239,138,0
chrXVI	380502	.	G	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=17.58;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1123,120,0
chrXVI	380513	.	T	C	999	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=16.65;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1032,111,0
chrXVI	380527	.	C	T	966	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=16.10;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:999,108,0
chrXVI	380674	.	G	C	959	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=6.5638;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=17.76;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:992,108,0
chrXVI	380801	.	A	G	1547	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=5.326;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=-0.624;QD=20.36;ReadPosRankSum=1.686;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:1,74:76:99:1580,177,0
chrXVI	380806	.	T	C	1299	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=17.32;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1332,144,0
chrXVI	381121	.	T	C	1684	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=20.29;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1717,186,0
chrXVI	381445	.	G	A	1514	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.1451;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.26;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1547,171,0
chrXVI	381495	.	G	C	1143	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.78;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1176,132,0
chrXVI	381702	.	C	T	430	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=15.36;SB=-8.701e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:48:463,48,0
chrXVI	381741	.	G	A	490	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=2.3869;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=16.90;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:57:523,57,0
chrXVI	381922	.	A	C	1078	filter	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.43;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1111,120,0
chrXVI	382120	.	A	C	646	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=17.94;SB=-2.130e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:679,78,0
chrXVI	382203	.	G	A	1368	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=22.43;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1401,147,0
chrXVI	382213	.	A	G	1277	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=20.27;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1310,141,0
chrXVI	382287	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=20.81;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,64:67:99:1427,156,0
chrXVI	382450	.	A	G	1975	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=24.09;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2008,228,0
chrXVI	382708	.	G	A	1695	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=20.42;SB=-9.470e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1728,183,0
chrXVI	382832	.	C	A	2173	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.3212;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.51;SB=-1.180e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2206,237,0
chrXVI	382997	.	A	G	2201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=-1.485;QD=22.46;ReadPosRankSum=1.697;SB=-1.218e+03	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2234,246,0
chrXVI	383245	.	A	G	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.208;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=12.9486;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.393;QD=20.42;ReadPosRankSum=-1.178;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1585,152,0
chrXVI	383361	.	T	C	2229	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=129;Dels=0.00;FS=3.397;HaplotypeScore=10.7618;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;MQRankSum=-0.738;QD=17.28;ReadPosRankSum=1.678;SB=-1.367e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2262,246,0
chrXVI	383778	.	A	G	1264	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=20.72;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1297,144,0
chrXVI	383928	.	G	A	1491	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=21.93;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1524,162,0
chrXVI	384709	.	A	G	1854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=78;Dels=0.00;FS=4.449;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=0.266;QD=23.77;ReadPosRankSum=1.643;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1887,204,0
chrXVI	385700	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.6519;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.155;QD=18.52;ReadPosRankSum=1.688;SB=-9.600e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1496,168,0
chrXVI	386168	.	T	C	1855	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.50;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:1888,210,0
chrXVI	386960	.	C	T	1578	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.24;SB=-1.032e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1611,171,0
chrXVI	386966	.	T	G	1381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.239;DP=82;Dels=0.00;FS=6.292;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;MQRankSum=0.256;QD=16.84;ReadPosRankSum=2.330;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1414,156,0
chrXVI	387009	.	C	T	1857	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=19.76;SB=-1.238e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:1890,201,0
chrXVI	387248	.	C	T	1213	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.56;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1246,132,0
chrXVI	388011	.	G	T	1876	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.17;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1909,207,0
chrXVI	388241	.	T	A	1319	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.29;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1352,147,0
chrXVI	388922	.	A	T	1211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.852;QD=19.22;ReadPosRankSum=1.677;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1244,132,0
chrXVI	389144	.	A	G	1634	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3599;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.50;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1667,180,0
chrXVI	389519	.	T	C	1577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.048;QD=21.90;ReadPosRankSum=1.684;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1610,180,0
chrXVI	389620	.	C	T	1225	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=16.12;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1258,141,0
chrXVI	389644	.	T	A	1324	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.355;DP=78;Dels=0.00;FS=7.030;HaplotypeScore=3.9756;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;MQRankSum=1.754;QD=16.97;ReadPosRankSum=2.323;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1357,144,0
chrXVI	389702	.	A	G	1239	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=6.6166;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=19.98;SB=-6.950e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1272,141,0
chrXVI	389817	.	A	G	1559	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=73;Dels=0.00;FS=6.269;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;MQRankSum=1.492;QD=21.36;ReadPosRankSum=1.684;SB=-2.900e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1592,177,0
chrXVI	390290	.	C	T	2703	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=12.8146;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=20.32;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,129:133:99:2736,300,0
chrXVI	390636	.	C	T	1864	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=9.0244;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.19;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,83:84:99:1897,204,0
chrXVI	391587	.	G	A	1240	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=18.79;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1273,138,0
chrXVI	392213	.	T	C	1593	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.24;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1626,177,0
chrXVI	392715	.	T	A	1708	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=20.33;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1741,192,0
chrXVI	392874	.	A	G	1513	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=21.93;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1546,168,0
chrXVI	393134	.	C	T	2304	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=15.7708;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=22.15;SB=-1.322e+03	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2337,252,0
chrXVI	393285	.	T	C	1767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.4941;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.899;QD=21.55;ReadPosRankSum=1.294;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,78:82:99:1800,182,0
chrXVI	393808	.	T	A	2336	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=101;Dels=0.00;FS=3.372;HaplotypeScore=6.0622;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=0.104;QD=23.13;ReadPosRankSum=1.697;SB=-1.232e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2369,252,0
chrXVI	393858	.	A	G	1648	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=19.16;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1681,192,0
chrXVI	393869	.	T	A	1697	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=19.28;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1730,189,0
chrXVI	394442	.	T	A	1255	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.02;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1288,138,0
chrXVI	395066	.	A	G	950	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=19.39;SB=-5.010e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:983,111,0
chrXVI	395775	.	G	A	1140	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.66;SB=-2.210e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1173,126,0
chrXVI	396203	.	A	G	830	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=20.75;SB=-2.430e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:99:863,99,0
chrXVI	397587	.	C	T	1547	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=21.79;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1580,168,0
chrXVI	398278	.	C	A	151.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;DP=74;Dels=0.01;FS=56.363;HaplotypeScore=30.5645;MLEAC=1;MLEAF=0.500;MQ=57.20;MQ0=0;MQRankSum=-0.744;QD=2.04;ReadPosRankSum=-0.862;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:46,26:73:99:181,0,645
chrXVI	398362	.	G	A	4245.01	PASS	AC=2;AF=1.00;AN=2;DP=168;Dels=0.00;FS=0.000;HaplotypeScore=8.7899;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.27;SB=-1.227e+03	GT:AD:DP:GQ:PL	1/1:0,168:168:99:4245,450,0
chrXVI	398561	.	G	A	2426	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=23.33;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2459,261,0
chrXVI	400049	.	G	A	1014	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.3527;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=20.28;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1047,111,0
chrXVI	401426	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.94;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1331,141,0
chrXVI	403300	.	G	T	211.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;DP=74;Dels=0.00;FS=120.598;HaplotypeScore=8.0750;MLEAC=1;MLEAF=0.500;MQ=57.07;MQ0=0;MQRankSum=-0.825;QD=2.85;ReadPosRankSum=-4.395;SB=0.079	GT:AD:DP:GQ:PL	0/1:50,23:74:99:241,0,546
chrXVI	403369	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=6.247;HaplotypeScore=5.7215;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=-0.382;QD=16.70;ReadPosRankSum=1.674;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1035,117,0
chrXVI	403562	.	T	C	1327	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=17.46;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1360,150,0
chrXVI	403703	.	G	A	844	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=6.7882;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=15.07;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:93:877,93,0
chrXVI	403706	.	A	G	791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;DP=54;Dels=0.00;FS=3.093;HaplotypeScore=8.4400;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.252;QD=14.65;ReadPosRankSum=2.176;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:2,52:54:90:824,90,0
chrXVI	404554	.	T	C	936	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.591;DP=52;Dels=0.00;FS=7.360;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.591;QD=18.00;ReadPosRankSum=1.662;SB=-2.100e+02	GT:AD:DP:GQ:PL	1/1:1,48:52:99:969,105,0
chrXVI	404634	.	C	A	850	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.77;SB=-3.440e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:93:883,93,0
chrXVI	404753	.	C	T	129.13	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=12.1729;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=6.15;SB=-1.671e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:18:162,18,0
chrXVI	405650	.	C	G	2158	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.8268;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.37;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:0,96:101:99:2191,243,0
chrXVI	406979	.	T	C	3646.01	PASS	AC=2;AF=1.00;AN=2;DP=149;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=24.47;SB=-1.549e+03	GT:AD:DP:GQ:PL	1/1:0,147:149:99:3646,399,0
chrXVI	408523	.	G	A	1210	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=23.73;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1243,132,0
chrXVI	408842	.	C	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.64;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1482,159,0
chrXVI	408889	.	G	A	1632	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.36;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1665,177,0
chrXVI	409538	.	C	T	1818	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.3042;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.17;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1851,201,0
chrXVI	413894	.	T	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=25.42;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1965,207,0
chrXVI	415343	.	G	A	878	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=23.11;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,38:38:99:911,99,0
chrXVI	415490	.	T	G	590	PASS	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=21.85;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,27:27:69:623,69,0
chrXVI	415596	.	A	G	912	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=24.65;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:99:945,102,0
chrXVI	416247	.	A	G	1135	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.108;QD=17.73;ReadPosRankSum=1.570;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1168,126,0
chrXVI	418457	.	T	C	1718	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0914;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.21;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1751,192,0
chrXVI	418598	.	T	C	1868	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7918;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.72;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1901,213,0
chrXVI	418853	.	A	G	1475	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=21.07;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,67:70:99:1508,159,0
chrXVI	418993	.	C	T	3014	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.929;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=8.0875;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.201;QD=20.93;ReadPosRankSum=-1.004;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:1,140:144:99:3047,314,0
chrXVI	419190	.	A	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.8906;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.25;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1734,192,0
chrXVI	420042	.	A	G	1680	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.287;DP=92;Dels=0.00;FS=8.896;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;MQRankSum=-0.122;QD=18.26;ReadPosRankSum=2.396;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:2,89:92:99:1713,189,0
chrXVI	420051	.	C	T	1624	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.2582;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=19.80;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1657,174,0
chrXVI	420342	.	A	G	1938	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.261;DP=116;Dels=0.00;FS=5.035;HaplotypeScore=8.2088;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;MQRankSum=1.218;QD=16.71;ReadPosRankSum=3.200;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:4,112:116:99:1971,219,0
chrXVI	422730	.	T	C	2336	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.0539;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=22.04;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2369,255,0
chrXVI	422802	.	T	G	2930	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=23.82;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2963,321,0
chrXVI	424350	.	G	T	241.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;DP=63;Dels=0.00;FS=117.834;HaplotypeScore=20.9148;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=-0.073;QD=3.83;ReadPosRankSum=-3.322;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:39,23:63:99:271,0,512
chrXVI	425481	.	C	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.79;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1798,195,0
chrXVI	425740	.	A	G	1095	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=23.30;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,44:47:99:1128,123,0
chrXVI	426328	.	G	A	1677	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=18.63;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,89:90:99:1710,180,0
chrXVI	426370	.	A	T	2458	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=9.9183;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.91;SB=-1.073e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2491,273,0
chrXVI	426447	.	C	T	1919	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.12;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1952,213,0
chrXVI	426505	.	C	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=6.4873;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.44;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1096,114,0
chrXVI	426991	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.3762;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=17.61;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1389,153,0
chrXVI	427075	.	C	T	1376	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=25.48;SB=-5.360e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1409,150,0
chrXVI	427120	.	G	A	1337	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=22.66;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1370,144,0
chrXVI	427130	.	A	G	1071	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=20.21;SB=-6.610e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1104,123,0
chrXVI	427238	.	G	T	1895	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.2311;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=21.53;SB=-1.080e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1928,204,0
chrXVI	427282	.	T	C	1659	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.27;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1692,186,0
chrXVI	427708	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=20.51;SB=-3.590e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1284,138,0
chrXVI	427730	.	C	A	1078	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.96;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1111,117,0
chrXVI	428058	.	T	C	1769	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=21.06;SB=-2.570e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1802,201,0
chrXVI	428065	.	G	A	1722	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=19.57;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1755,192,0
chrXVI	428130	.	T	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=22.03;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1685,183,0
chrXVI	428253	.	G	A	2147	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.12;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2180,231,0
chrXVI	428330	.	C	T	2709	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.6825;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.39;SB=-1.617e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2742,291,0
chrXVI	428479	.	T	C	1789	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.26;MQ0=0;QD=20.10;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1822,201,0
chrXVI	428562	.	C	G	1829	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.3128;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=21.27;SB=-1.038e+03	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1862,207,0
chrXVI	428616	.	A	G	2704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.851;DP=128;Dels=0.00;FS=2.585;HaplotypeScore=8.3086;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=0.157;QD=21.12;ReadPosRankSum=2.929;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:3,125:128:99:2737,303,0
chrXVI	428691	.	A	G	3380.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.95;SB=-1.732e+03	GT:AD:DP:GQ:PL	1/1:0,154:154:99:3380,366,0
chrXVI	428880	.	A	G	1586	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.24;MQ0=0;MQRankSum=0.000;QD=17.24;ReadPosRankSum=1.694;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1619,177,0
chrXVI	428904	.	G	A	1466	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.22;MQ0=0;QD=16.11;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1499,159,0
chrXVI	428908	.	C	T	1512	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.89;MQ0=0;QD=17.38;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1545,165,0
chrXVI	428918	.	A	G	1327	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=15.61;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1360,150,0
chrXVI	429004	.	C	G	1459	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=6.4149;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=17.79;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1492,165,0
chrXVI	429187	.	C	T	1569	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6422;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.10;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1602,177,0
chrXVI	429229	.	C	G	1548	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.21;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1581,177,0
chrXVI	429391	.	C	T	2095	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=3.4581;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=22.29;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2128,228,0
chrXVI	429479	.	T	C	1476	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.71;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1509,171,0
chrXVI	429656	.	C	T	2656	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.23;MQ0=0;QD=19.82;SB=-1.145e+03	GT:AD:DP:GQ:PL	1/1:0,131:134:99:2689,288,0
chrXVI	429659	.	G	T	2638	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.14;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2671,288,0
chrXVI	429704	.	A	T	1881	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=19.00;SB=-1.181e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1914,204,0
chrXVI	429834	.	A	C	1301	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.33;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1334,150,0
chrXVI	429879	.	C	T	1655	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.36;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1688,177,0
chrXVI	429951	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=70;Dels=0.00;FS=3.765;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.331;QD=22.70;ReadPosRankSum=1.682;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:1,68:70:99:1622,177,0
chrXVI	430091	.	G	A	1134	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=19.89;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1167,123,0
chrXVI	430100	.	C	T	1096	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=17.40;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1129,123,0
chrXVI	430227	.	T	A	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=7.996;HaplotypeScore=5.6802;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=0.378;QD=20.60;ReadPosRankSum=2.331;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1310,138,0
chrXVI	430271	.	G	A	1605	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.3888;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=21.69;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1638,174,0
chrXVI	430826	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=21.17;SB=-7.370e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1494,165,0
chrXVI	432057	.	G	C	1394	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=9.2153;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=17.42;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1427,159,0
chrXVI	432226	.	C	G	2736	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=25.81;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2769,300,0
chrXVI	432881	.	C	T	1893	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8190;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=20.14;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1926,207,0
chrXVI	433340	.	A	G	1037	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=-1.299;QD=18.52;ReadPosRankSum=1.670;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1070,117,0
chrXVI	433481	.	T	C	1404	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.60;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1437,156,0
chrXVI	434157	.	C	T	2074	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.60;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2107,222,0
chrXVI	434269	.	A	T	1754	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.70;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1787,192,0
chrXVI	434405	.	G	A	1555	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=21.60;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1588,177,0
chrXVI	434418	.	G	T	1538	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=22.62;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1571,171,0
chrXVI	434506	.	C	A	1860	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.9224;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=21.14;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1893,213,0
chrXVI	434613	.	C	T	1629	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.62;SB=-8.300e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1662,177,0
chrXVI	435056	.	C	T	1985	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=12.1295;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.56;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,84:88:99:2018,213,0
chrXVI	435173	.	G	A	1560	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.80;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1593,180,0
chrXVI	435332	.	C	T	2104	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.0398;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:0,92:94:99:2137,231,0
chrXVI	435413	.	C	G	1798	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=21.93;SB=-9.780e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1831,201,0
chrXVI	435620	.	T	C	1043	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.62;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1076,123,0
chrXVI	435711	.	A	T	1852	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=3.170;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.565;QD=21.79;ReadPosRankSum=1.649;SB=-1.053e+03	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1885,198,0
chrXVI	436158	.	T	C	3408.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=141;Dels=0.00;FS=6.052;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;MQRankSum=1.069;QD=24.17;ReadPosRankSum=1.708;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,140:141:99:3408,369,0
chrXVI	436358	.	T	C	2358	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=3.010;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.92;MQ0=0;MQRankSum=1.243;QD=23.12;ReadPosRankSum=2.401;SB=-1.255e+03	GT:AD:DP:GQ:PL	1/1:2,98:102:99:2391,258,0
chrXVI	436359	.	T	C	2382	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.57;MQ0=0;QD=23.82;SB=-1.262e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2415,261,0
chrXVI	436450	.	T	C	1321	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;QD=18.61;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1354,150,0
chrXVI	436464	.	G	A	1094	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=16.33;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1127,129,0
chrXVI	436465	.	A	C	1280	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=19.10;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1313,144,0
chrXVI	436481	.	A	G	677	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.62;MQ0=0;MQRankSum=-0.913;QD=12.31;ReadPosRankSum=1.669;SB=-2.520e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:78:710,78,0
chrXVI	443115	.	C	T	36.97	filter	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.33;MQ0=3;QD=3.70;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:0,8:10:9:69,9,0
chrXVI	443745	.	A	G	2977	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.5431;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=23.63;SB=-1.542e+03	GT:AD:DP:GQ:PL	1/1:0,123:126:99:3010,336,0
chrXVI	443804	.	T	A	2395	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=98.3640;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=20.30;SB=-1.456e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2428,258,0
chrXVI	443905	.	T	G	2385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;DP=113;Dels=0.00;FS=2.306;HaplotypeScore=5.9088;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;MQRankSum=-0.223;QD=21.11;ReadPosRankSum=1.170;SB=-1.249e+03	GT:AD:DP:GQ:PL	1/1:3,110:113:99:2418,270,0
chrXVI	443969	.	G	C	2639	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=4.0100;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=21.28;SB=-1.554e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2672,294,0
chrXVI	444034	.	C	T	2372	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=9.6558;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.10;SB=-1.420e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2405,264,0
chrXVI	444118	.	T	C	1872	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.2692;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;QD=20.80;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1905,207,0
chrXVI	444290	.	C	T	3108	PASS	AC=2;AF=1.00;AN=2;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5601;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=22.04;SB=-1.439e+03	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3141,330,0
chrXVI	444303	.	T	C	2879	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=3.3989;MLEAC=2;MLEAF=1.00;MQ=48.65;MQ0=0;QD=21.17;SB=-1.448e+03	GT:AD:DP:GQ:PL	1/1:0,134:136:99:2912,318,0
chrXVI	444306	.	T	C	2826	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=48.74;MQ0=0;MQRankSum=1.226;QD=20.63;ReadPosRankSum=0.569;SB=-1.507e+03	GT:AD:DP:GQ:PL	1/1:1,136:137:99:2859,315,0
chrXVI	444321	.	G	A	2613	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=20.57;SB=-1.438e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2646,282,0
chrXVI	444367	.	A	T	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.4035;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;MQRankSum=0.512;QD=19.56;ReadPosRankSum=1.635;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1441,162,0
chrXVI	444434	.	A	G	1257	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.95;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1290,141,0
chrXVI	444490	.	G	A	1949	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=8.5981;MLEAC=2;MLEAF=1.00;MQ=55.09;MQ0=0;QD=22.93;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1982,210,0
chrXVI	444685	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=7.4752;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=22.51;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1564,171,0
chrXVI	444755	.	G	A	1493	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.5536;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=23.33;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,62:64:99:1526,159,0
chrXVI	444899	.	A	G	1741	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3909;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.98;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1774,198,0
chrXVI	444920	.	T	A	1812	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.3982;MLEAC=2;MLEAF=1.00;MQ=56.64;MQ0=0;QD=19.48;SB=-7.560e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1845,204,0
chrXVI	444980	.	A	G	1567	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=21.47;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1600,174,0
chrXVI	445300	.	T	C	1745	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=21.02;SB=-1.057e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1778,195,0
chrXVI	445378	.	G	T	482	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=12.36;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:54:515,54,0
chrXVI	445425	.	T	C	1067	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.05;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1100,123,0
chrXVI	445607	.	G	A	1103	filter	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1136,123,0
chrXVI	445861	.	T	C	922	filter	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.61;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,36:36:99:955,108,0
chrXVI	445985	.	C	T	1848	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=6.4394;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=24.97;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1881,201,0
chrXVI	446055	.	T	C	1786	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.390;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=0.286;QD=21.78;ReadPosRankSum=2.360;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:2,80:82:99:1819,201,0
chrXVI	446280	.	A	T	1238	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0734;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=19.65;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1271,135,0
chrXVI	446457	.	T	C	1395	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7570;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=18.85;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1428,162,0
chrXVI	446756	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.16;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1323,150,0
chrXVI	447294	.	G	T	1967	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=23.14;SB=-1.070e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2000,210,0
chrXVI	447414	.	T	C	1575	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.1647;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-0.683;QD=21.28;ReadPosRankSum=2.383;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:2,72:74:99:1608,174,0
chrXVI	448074	.	G	A	1933	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=17.90;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1966,219,0
chrXVI	448089	.	T	C	1854	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=110;Dels=0.00;FS=2.582;HaplotypeScore=6.2293;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;MQRankSum=0.785;QD=16.85;ReadPosRankSum=2.879;SB=-1.036e+03	GT:AD:DP:GQ:PL	1/1:3,105:110:99:1887,207,0
chrXVI	448143	.	G	A	1820	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=18.57;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,96:98:99:1853,198,0
chrXVI	448407	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=18.83;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:1972,225,0
chrXVI	448559	.	T	C	1782	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.27;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1815,201,0
chrXVI	449133	.	C	T	1415	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.93;SB=-9.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1448,156,0
chrXVI	450160	.	T	C	1960	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.692;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;MQRankSum=0.161;QD=22.53;ReadPosRankSum=1.692;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:1,85:87:99:1993,225,0
chrXVI	450430	.	G	A	1926	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.86;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,96:97:99:1959,210,0
chrXVI	450675	.	C	T	2700	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.4732;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=26.47;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2733,288,0
chrXVI	450731	.	T	A	2493	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=25.18;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2526,270,0
chrXVI	450989	.	G	T	1383	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4696;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=17.96;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1416,153,0
chrXVI	451153	.	T	G	657	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.25;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:78:690,78,0
chrXVI	451219	.	T	C	470	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.02;MQ0=0;QD=22.38;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:54:503,54,0
chrXVI	451317	.	A	G	448	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.00;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:54:481,54,0
chrXVI	452126	.	C	T	2232	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.77;MQ0=0;QD=21.88;SB=-9.590e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2265,240,0
chrXVI	452140	.	A	G	2031	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=19.72;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2064,237,0
chrXVI	452142	.	T	G	2021	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=20.21;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2054,231,0
chrXVI	452400	.	G	C	1862	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.1898;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.92;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1895,204,0
chrXVI	452827	.	T	A	2217	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=18.95;SB=-1.406e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2250,249,0
chrXVI	452986	.	G	A	1803	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.7968;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=18.40;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1836,195,0
chrXVI	453010	.	C	T	1839	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=19.56;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1872,207,0
chrXVI	453106	.	C	T	1953	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=23.82;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1986,210,0
chrXVI	453333	.	A	G	1159	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=18.69;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1192,132,0
chrXVI	453447	.	A	G	1094	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.54;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1127,123,0
chrXVI	453508	.	C	T	1188	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=22.00;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1221,129,0
chrXVI	453647	.	A	G	742	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=44;Dels=0.00;FS=5.093;HaplotypeScore=4.1336;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=-1.733;QD=16.86;ReadPosRankSum=1.650;SB=-3.200e+02	GT:AD:DP:GQ:PL	1/1:1,41:44:84:775,84,0
chrXVI	453873	.	C	T	1269	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.88;SB=-6.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1302,138,0
chrXVI	454180	.	T	G	1105	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.7218;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=18.73;SB=-7.010e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1138,129,0
chrXVI	454244	.	T	C	1503	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.454;QD=17.89;ReadPosRankSum=1.691;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1536,168,0
chrXVI	454319	.	G	A	2346	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.94;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2379,252,0
chrXVI	454517	.	A	G	1421	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;QD=19.74;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,69:72:99:1454,162,0
chrXVI	454578	.	T	G	1033	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=3.537;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;MQRankSum=0.000;QD=14.55;ReadPosRankSum=1.683;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1066,120,0
chrXVI	454587	.	C	T	1176	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=15.89;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1209,129,0
chrXVI	455063	.	G	C	1811	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.4801;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=21.06;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,84:86:99:1844,201,0
chrXVI	455359	.	T	A	1622	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;QD=21.92;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1655,174,0
chrXVI	455366	.	T	C	1562	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=80;Dels=0.00;FS=5.414;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;MQRankSum=0.520;QD=19.52;ReadPosRankSum=1.689;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1595,180,0
chrXVI	455475	.	T	A	1081	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=17.16;SB=-6.301e+01	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1114,120,0
chrXVI	455516	.	G	T	762	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3225;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=16.93;SB=-2.401e+01	GT:AD:DP:GQ:PL	1/1:0,45:45:90:795,90,0
chrXVI	455538	.	T	C	622	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=15.95;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,39:39:72:655,72,0
chrXVI	455737	.	A	C	729	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.9075;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.18;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,34:38:87:762,87,0
chrXVI	456175	.	T	C	1384	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=19.49;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1417,156,0
chrXVI	456292	.	C	T	1233	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=19.27;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1266,138,0
chrXVI	456456	.	G	A	1908	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.0639;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,89:92:99:1941,207,0
chrXVI	458635	.	G	C	1716	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=20.43;SB=-9.820e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1749,195,0
chrXVI	459330	.	T	G	1861	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.608;DP=84;Dels=0.00;FS=4.472;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-1.443;QD=22.15;ReadPosRankSum=1.691;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1894,210,0
chrXVI	459712	.	C	T	2551	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=4.1771;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=22.18;SB=-1.004e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2584,282,0
chrXVI	460008	.	G	A	3719.01	PASS	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=19.2257;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.78;SB=-1.890e+03	GT:AD:DP:GQ:PL	1/1:0,174:179:99:3719,396,0
chrXVI	462045	.	C	T	1109	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=22.63;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1142,120,0
chrXVI	462073	.	G	A	799	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;MQRankSum=0.091;QD=21.03;ReadPosRankSum=0.182;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:70:832,70,0
chrXVI	462121	.	C	G	695	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=24.82;SB=-6.201e+01	GT:AD:DP:GQ:PL	1/1:0,28:28:81:728,81,0
chrXVI	462153	.	C	A	824	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.27;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:90:857,90,0
chrXVI	462164	.	C	T	879	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.98;SB=-1.430e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:96:912,96,0
chrXVI	462319	.	A	G	1225	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.69;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1258,135,0
chrXVI	462499	.	A	G	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;MQRankSum=1.147;QD=18.43;ReadPosRankSum=1.687;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1452,159,0
chrXVI	462656	.	G	A	1833	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.6018;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=19.71;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1866,213,0
chrXVI	462756	.	T	C	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;DP=78;Dels=0.00;FS=3.869;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=0.933;QD=17.62;ReadPosRankSum=1.643;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1407,156,0
chrXVI	462814	.	T	G	1086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=78;Dels=0.00;FS=3.067;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;MQRankSum=-2.102;QD=13.92;ReadPosRankSum=2.260;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1119,123,0
chrXVI	462835	.	G	A	996	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=12.61;SB=-1.007e+03	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1029,114,0
chrXVI	462843	.	T	C	1053	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.31;MQ0=0;QD=13.68;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1086,120,0
chrXVI	462936	.	C	T	1945	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-1.065e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1978,213,0
chrXVI	463061	.	T	C	1841	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=21.16;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1874,207,0
chrXVI	463075	.	C	T	2210	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=4.2720;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.46;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2243,240,0
chrXVI	463543	.	G	A	738	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=14.76;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:87:771,87,0
chrXVI	463609	.	C	G	823	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.57;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:96:856,96,0
chrXVI	463700	.	C	T	856	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.38;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:93:889,93,0
chrXVI	464146	.	C	T	645	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=14.33;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:72:678,72,0
chrXVI	464194	.	A	G	608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=4.3183;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=-1.732;QD=11.47;ReadPosRankSum=1.666;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:72:641,72,0
chrXVI	464559	.	G	A	735	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.85;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:768,87,0
chrXVI	464709	.	C	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=17.84;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1407,153,0
chrXVI	465889	.	A	G	1422	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=22.94;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1455,162,0
chrXVI	466112	.	G	T	1435	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=18.88;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1468,162,0
chrXVI	466824	.	G	C	2071	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=22.51;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2104,228,0
chrXVI	467054	.	C	T	1580	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=9.9990;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=17.95;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1613,171,0
chrXVI	467077	.	T	C	1507	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=18.60;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1540,168,0
chrXVI	467087	.	G	C	1594	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=18.75;SB=-1.106e+03	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1627,180,0
chrXVI	467090	.	C	T	1647	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=19.38;SB=-1.157e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1680,177,0
chrXVI	467237	.	C	T	1726	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.3432;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=21.05;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1759,186,0
chrXVI	467571	.	T	C	1331	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1249;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=20.17;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1364,156,0
chrXVI	467632	.	T	C	1312	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.18;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1345,147,0
chrXVI	467771	.	A	G	1481	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.78;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1514,165,0
chrXVI	468177	.	C	T	1880	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.42;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1913,204,0
chrXVI	468262	.	T	C	1865	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=-0.697;QD=21.19;ReadPosRankSum=1.613;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1898,207,0
chrXVI	468512	.	A	C	1651	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.64;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1684,192,0
chrXVI	468648	.	C	G	2176	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.4380;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=24.73;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:2209,240,0
chrXVI	469012	.	C	A	2645	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.41;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2678,282,0
chrXVI	469693	.	C	T	1212	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=24.24;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1245,132,0
chrXVI	469730	.	G	C	717	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.93;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:84:750,84,0
chrXVI	470616	.	A	G	1369	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=6.3919;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=21.39;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1402,153,0
chrXVI	470860	.	C	G	1281	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=23.72;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1314,147,0
chrXVI	471189	.	G	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=20.89;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1621,177,0
chrXVI	471267	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.266;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.386;QD=19.70;ReadPosRankSum=1.683;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1412,153,0
chrXVI	471834	.	A	G	1502	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;DP=75;Dels=0.00;FS=7.360;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.117;QD=20.03;ReadPosRankSum=2.250;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:2,72:75:99:1535,174,0
chrXVI	471891	.	A	G	1634	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.552;DP=77;Dels=0.00;FS=4.551;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-1.597;QD=21.22;ReadPosRankSum=1.687;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1667,186,0
chrXVI	472110	.	A	G	2365	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.359;DP=108;Dels=0.00;FS=9.873;HaplotypeScore=7.2463;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=-1.219;QD=21.90;ReadPosRankSum=2.404;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:2,106:108:99:2398,267,0
chrXVI	472490	.	G	A	2046	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.8403;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.26;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2079,228,0
chrXVI	472568	.	G	A	2694	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.45;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2727,288,0
chrXVI	472696	.	A	C	2301	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=21.71;SB=-7.880e+02	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2334,255,0
chrXVI	472808	.	A	T	969	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;DP=42;Dels=0.00;FS=2.955;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.030;QD=23.07;ReadPosRankSum=2.333;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:2,40:42:99:1002,105,0
chrXVI	472825	.	T	C	939	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.36;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:972,105,0
chrXVI	472894	.	G	T	1531	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.02;FS=0.000;HaplotypeScore=10.0981;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.67;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1564,165,0
chrXVI	473286	.	T	C	1710	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.4671;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.37;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1743,195,0
chrXVI	473391	.	T	C	2056	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.91;MQ0=0;QD=22.84;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:2089,231,0
chrXVI	473481	.	A	G	1095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.466;DP=53;Dels=0.00;FS=3.358;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;MQRankSum=-1.532;QD=20.66;ReadPosRankSum=1.666;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1128,129,0
chrXVI	473594	.	G	A	1675	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.01;FS=0.000;HaplotypeScore=6.1446;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=23.26;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1708,180,0
chrXVI	473877	.	A	C	999	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=17.84;SB=-5.450e+02	GT:AD:DP:GQ:PL	1/1:0,54:56:99:1032,114,0
chrXVI	473892	.	G	A	993	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=19.10;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1026,108,0
chrXVI	474003	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=17.28;SB=-4.040e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1035,117,0
chrXVI	474526	.	C	T	1475	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=21.69;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1508,159,0
chrXVI	474750	.	G	A	2087	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.52;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2120,240,0
chrXVI	475484	.	G	C	1250	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=20.16;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1283,141,0
chrXVI	475496	.	G	A	1161	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=19.35;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1194,129,0
chrXVI	476694	.	C	G	982	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=18.88;SB=-4.260e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:99:1015,114,0
chrXVI	476826	.	G	A	1082	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=16.39;SB=-6.410e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1115,120,0
chrXVI	476833	.	T	C	1051	SnpCluster	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=16.42;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1084,117,0
chrXVI	476836	.	T	C	1032	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;MQRankSum=-0.108;QD=16.12;ReadPosRankSum=1.678;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1065,117,0
chrXVI	476851	.	A	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=17.57;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1140,120,0
chrXVI	476932	.	G	A	1140	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=19.00;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1173,126,0
chrXVI	477202	.	A	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.53;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1108,120,0
chrXVI	477321	.	T	C	1543	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=22.04;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1576,174,0
chrXVI	477481	.	C	G	1592	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.41;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:78:99:1625,180,0
chrXVI	477597	.	T	G	1641	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=22.18;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1674,189,0
chrXVI	478120	.	G	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.9800;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.88;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1662,180,0
chrXVI	478141	.	G	A	1586	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.33;SB=-1.024e+03	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1619,171,0
chrXVI	478144	.	A	T	1456	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=18.20;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1489,162,0
chrXVI	478228	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.3288;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=21.14;SB=-9.230e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1576,168,0
chrXVI	478277	.	T	C	1377	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-0.276;QD=19.96;ReadPosRankSum=1.682;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1410,156,0
chrXVI	478288	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=17.89;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1035,114,0
chrXVI	478558	.	C	T	1040	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=18.91;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1073,114,0
chrXVI	478657	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5508;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=21.37;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1529,168,0
chrXVI	478714	.	G	A	1644	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.55;SB=-8.940e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1677,189,0
chrXVI	478917	.	A	G	1199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=3.979;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.606;QD=21.80;ReadPosRankSum=1.669;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1232,135,0
chrXVI	479396	.	G	A	1437	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.24;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1470,162,0
chrXVI	479770	.	A	G	1836	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.0191;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=22.67;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1869,204,0
chrXVI	479826	.	C	T	1722	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=8.0223;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=20.26;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1755,189,0
chrXVI	479899	.	C	T	2699	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=51.74;MQ0=0;QD=22.68;SB=-1.239e+03	GT:AD:DP:GQ:PL	1/1:0,117:119:99:2732,291,0
chrXVI	479920	.	A	C	2256	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;QD=21.08;SB=-1.390e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2289,258,0
chrXVI	479932	.	G	T	2199	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=52.97;MQ0=0;QD=21.99;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2232,240,0
chrXVI	480296	.	C	A	140.13	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.02;FS=0.000;HaplotypeScore=19.3963;MLEAC=2;MLEAF=1.00;MQ=44.89;MQ0=0;QD=1.59;SB=-7.121e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:18:173,18,0
chrXVI	480383	.	T	A	959	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-3.460e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:992,105,0
chrXVI	480441	.	T	G	1018	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=6.4328;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=23.14;SB=-2.990e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1051,114,0
chrXVI	480754	.	A	G	1310	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=6.0444;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=22.20;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1343,147,0
chrXVI	480795	.	T	C	1741	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;MQRankSum=0.693;QD=21.76;ReadPosRankSum=1.689;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,79:80:99:1774,198,0
chrXVI	481072	.	T	G	1246	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.60;SB=-2.700e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1279,141,0
chrXVI	481833	.	A	G	964	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;DP=57;Dels=0.00;FS=2.615;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.369;QD=16.91;ReadPosRankSum=2.364;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:2,55:57:99:997,108,0
chrXVI	481955	.	G	T	1012	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=19.09;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1045,111,0
chrXVI	481979	.	C	T	1062	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.95;MQ0=0;QD=18.63;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1095,117,0
chrXVI	482155	.	G	A	1021	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=20.84;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1054,111,0
chrXVI	482212	.	G	A	831	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=19.79;SB=-4.240e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:90:864,90,0
chrXVI	482234	.	T	C	931	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=20.69;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:964,105,0
chrXVI	482354	.	A	T	1024	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1259;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=16.52;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1057,114,0
chrXVI	482429	.	A	G	927	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.660;QD=19.31;ReadPosRankSum=1.660;SB=-4.060e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:960,108,0
chrXVI	482737	.	G	C	1365	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.01;FS=0.000;HaplotypeScore=10.3107;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=20.37;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1398,153,0
chrXVI	482770	.	C	T	1242	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=51.4567;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=16.13;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1275,135,0
chrXVI	482968	.	T	G	690	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=17.69;SB=-3.180e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:84:723,84,0
chrXVI	483004	.	G	A	646	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=11.54;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:72:679,72,0
chrXVI	483027	.	A	T	767	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=11.80;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:87:800,87,0
chrXVI	483116	.	G	A	1903	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=22.93;SB=-1.015e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1936,207,0
chrXVI	483298	.	T	G	1664	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.5283;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;QD=20.80;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1697,192,0
chrXVI	483319	.	T	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.00;MQ0=0;QD=22.01;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1618,174,0
chrXVI	483355	.	T	C	1006	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=16.77;SB=-6.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1039,120,0
chrXVI	483359	.	G	T	1080	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=18.31;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1113,123,0
chrXVI	483739	.	T	C	1564	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=19.31;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1597,180,0
chrXVI	483904	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.45;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1170,129,0
chrXVI	483961	.	G	C	724	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.45;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:84:757,84,0
chrXVI	484285	.	C	T	1439	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.59;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1472,156,0
chrXVI	484327	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=23.32;SB=-4.380e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1059,117,0
chrXVI	484357	.	C	T	936	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.83;SB=-5.070e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:969,105,0
chrXVI	484429	.	T	C	1476	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=22.03;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1509,168,0
chrXVI	484684	.	T	C	1984	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.317;DP=95;Dels=0.00;FS=2.591;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-1.046;QD=20.88;ReadPosRankSum=2.317;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:2,92:95:99:2017,222,0
chrXVI	485045	.	C	T	2333	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=21.60;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:2366,252,0
chrXVI	485132	.	A	G	1628	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=20.61;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1661,180,0
chrXVI	485137	.	T	C	1580	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=20.79;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1613,180,0
chrXVI	485355	.	T	C	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;MQRankSum=1.434;QD=22.33;ReadPosRankSum=1.673;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1328,144,0
chrXVI	485697	.	C	T	1131	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=50.29;MQ0=0;QD=16.88;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1164,123,0
chrXVI	485698	.	A	G	1068	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=3.061;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.13;MQ0=0;MQRankSum=0.430;QD=16.18;ReadPosRankSum=2.375;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1101,123,0
chrXVI	485788	.	T	G	1219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.305;DP=68;Dels=0.00;FS=2.938;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;MQRankSum=0.962;QD=17.93;ReadPosRankSum=2.377;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:2,66:68:99:1252,141,0
chrXVI	485801	.	G	A	1134	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=18.59;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1167,126,0
chrXVI	485873	.	T	G	1538	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=62.20;MQ0=0;QD=22.62;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1571,171,0
chrXVI	485898	.	C	T	1451	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=20.44;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1484,159,0
chrXVI	486011	.	C	A	1518	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0180;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=16.15;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1551,171,0
chrXVI	486231	.	G	T	3616.01	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=12.4547;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=23.48;SB=-1.187e+03	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3616,387,0
chrXVI	486307	.	G	A	2592	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=25.92;SB=-1.087e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2625,279,0
chrXVI	486334	.	G	A	2450	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.90;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2483,276,0
chrXVI	486489	.	T	C	1997	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=91;Dels=0.00;FS=3.931;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=0.097;QD=21.95;ReadPosRankSum=1.693;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:1,88:91:99:2030,219,0
chrXVI	486595	.	A	G	2201	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=20.57;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2234,252,0
chrXVI	486612	.	A	G	2330	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;MQRankSum=-0.874;QD=20.62;ReadPosRankSum=1.671;SB=-1.140e+03	GT:AD:DP:GQ:PL	1/1:1,112:113:99:2363,264,0
chrXVI	486646	.	G	A	2218	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.96;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2251,237,0
chrXVI	486789	.	T	G	1396	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.81;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1429,159,0
chrXVI	486969	.	A	T	1807	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.2435;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=22.59;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1840,198,0
chrXVI	487204	.	C	T	1206	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=43.1807;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=22.75;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1239,132,0
chrXVI	487322	.	C	T	2899	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=11.9657;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.01;SB=-1.523e+03	GT:AD:DP:GQ:PL	1/1:0,124:126:99:2932,309,0
chrXVI	487504	.	T	C	1379	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=22.24;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1412,159,0
chrXVI	487664	.	A	G	1597	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=21.29;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1630,180,0
chrXVI	488115	.	A	G	1574	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=19.92;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1607,177,0
chrXVI	488130	.	G	A	1581	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.52;MQ0=0;QD=21.08;SB=-8.840e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1614,168,0
chrXVI	488493	.	A	G	2066	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=22.96;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2099,231,0
chrXVI	488578	.	G	A	1408	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=70.1882;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=18.05;SB=-1.690e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1441,168,0
chrXVI	488646	.	G	T	1379	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=22.24;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1412,150,0
chrXVI	488655	.	A	C	1183	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=20.05;SB=-3.770e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1216,135,0
chrXVI	489145	.	G	A	2280	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.3696;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=23.75;SB=-8.990e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2313,249,0
chrXVI	489307	.	T	A	1932	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.6903;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.52;SB=-1.210e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:1965,210,0
chrXVI	489538	.	T	C	1801	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.5677;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.47;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1834,198,0
chrXVI	489543	.	G	A	1781	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=20.95;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1814,192,0
chrXVI	489607	.	G	A	1430	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=9.0086;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.10;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1463,153,0
chrXVI	490120	.	C	T	274	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.44;MQ0=0;QD=5.59;SB=-4.830e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:33:307,33,0
chrXVI	490131	.	G	T	269	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=48.41;MQ0=0;QD=5.17;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:33:302,33,0
chrXVI	490135	.	G	A	360	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.4826;MLEAC=2;MLEAF=1.00;MQ=48.89;MQ0=0;MQRankSum=0.962;QD=6.67;ReadPosRankSum=0.898;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:42:393,42,0
chrXVI	490450	.	C	T	2068	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.3485;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.98;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2101,228,0
chrXVI	490554	.	G	A	1176	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=19.93;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1209,132,0
chrXVI	490756	.	G	A	1807	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.51;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1840,198,0
chrXVI	490906	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=20.63;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1374,150,0
chrXVI	491068	.	C	T	2036	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=22.37;SB=-9.540e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2069,222,0
chrXVI	491113	.	G	A	1535	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=17.44;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,86:88:99:1568,174,0
chrXVI	491133	.	C	T	1378	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.3829;MLEAC=2;MLEAF=1.00;MQ=56.17;MQ0=0;QD=19.14;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1411,150,0
chrXVI	491370	.	T	G	1127	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;DP=66;Dels=0.00;FS=5.408;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;MQRankSum=1.680;QD=17.08;ReadPosRankSum=1.627;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1160,129,0
chrXVI	491388	.	G	A	1167	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=17.42;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1200,126,0
chrXVI	491959	.	T	C	1382	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=16.85;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1415,156,0
chrXVI	492209	.	T	A	1104	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.77;MQ0=0;QD=18.40;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1137,129,0
chrXVI	492242	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=21.07;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1529,165,0
chrXVI	492354	.	C	T	2065	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=21.51;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2098,222,0
chrXVI	493097	.	G	A	2883	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=9.4095;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=23.06;SB=-1.458e+03	GT:AD:DP:GQ:PL	1/1:0,121:125:99:2916,303,0
chrXVI	493521	.	A	G	2231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;DP=101;Dels=0.00;FS=6.990;HaplotypeScore=6.4366;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=-0.776;QD=22.09;ReadPosRankSum=2.401;SB=-1.086e+03	GT:AD:DP:GQ:PL	1/1:2,98:101:99:2264,246,0
chrXVI	494210	.	C	T	1679	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=23.65;SB=-8.930e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1712,180,0
chrXVI	494922	.	T	C	2815	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=11.7208;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=24.06;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2848,321,0
chrXVI	495156	.	A	G	1068	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=19.78;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1101,123,0
chrXVI	495265	.	A	G	4886.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.417;DP=225;Dels=0.00;FS=2.864;HaplotypeScore=12.9148;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-0.159;QD=21.72;ReadPosRankSum=2.428;SB=-2.367e+03	GT:AD:DP:GQ:PL	1/1:2,222:225:99:4886,546,0
chrXVI	495832	.	G	A	2277	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=11.2857;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=22.54;SB=-1.027e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2310,246,0
chrXVI	496405	.	T	C	1264	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=20.72;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1297,144,0
chrXVI	496486	.	A	G	1705	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=11.7755;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=20.30;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1738,189,0
chrXVI	496633	.	T	C	1740	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=0.660;QD=20.71;ReadPosRankSum=1.691;SB=-9.520e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1773,204,0
chrXVI	496734	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.0791;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=22.48;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1494,165,0
chrXVI	497140	.	T	C	1221	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=21.42;ReadPosRankSum=1.611;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1254,138,0
chrXVI	497425	.	C	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.42;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1533,165,0
chrXVI	497707	.	A	G	1925	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;DP=92;Dels=0.00;FS=2.665;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=-1.432;QD=20.92;ReadPosRankSum=2.396;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:2,90:92:99:1958,216,0
chrXVI	497758	.	T	C	1237	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.1463;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.63;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1270,135,0
chrXVI	498040	.	G	A	2029	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.82;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2062,216,0
chrXVI	498269	.	C	T	869	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.20;SB=-1.660e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:902,99,0
chrXVI	498437	.	A	G	1846	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=97;Dels=0.00;FS=3.695;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=-0.144;QD=19.03;ReadPosRankSum=1.660;SB=-1.092e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:1879,207,0
chrXVI	498617	.	T	C	1067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=4.181;HaplotypeScore=3.3449;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=0.346;QD=19.40;ReadPosRankSum=1.669;SB=-4.740e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1100,120,0
chrXVI	498689	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.5942;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=23.60;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2063,219,0
chrXVI	498788	.	A	G	1523	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.9328;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.501;QD=20.04;ReadPosRankSum=1.687;SB=-5.320e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1556,171,0
chrXVI	499073	.	G	A	2060	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.11;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2093,222,0
chrXVI	499315	.	G	A	3551.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=7.7227;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=20.77;SB=-1.472e+03	GT:AD:DP:GQ:PL	1/1:0,165:171:99:3551,390,0
chrXVI	499388	.	G	A	2907	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=13.0885;MLEAC=2;MLEAF=1.00;MQ=49.61;MQ0=0;QD=23.07;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2940,312,0
chrXVI	499635	.	C	T	2409	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.08;MQ0=0;QD=21.32;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,113:113:99:2442,255,0
chrXVI	499664	.	A	G	2062	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.32;MQ0=0;QD=18.92;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2095,228,0
chrXVI	499678	.	A	G	1614	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=30.7589;MLEAC=2;MLEAF=1.00;MQ=32.43;MQ0=0;QD=18.13;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1647,186,0
chrXVI	499684	.	G	A	1461	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=62.5385;MLEAC=2;MLEAF=1.00;MQ=32.80;MQ0=0;QD=18.26;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1494,162,0
chrXVI	499691	.	T	C	829	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.828;DP=97;Dels=0.00;FS=3.050;HaplotypeScore=61.5215;MLEAC=2;MLEAF=1.00;MQ=33.46;MQ0=0;MQRankSum=1.451;QD=8.55;ReadPosRankSum=-7.918;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:31,66:97:96:862,96,0
chrXVI	499739	.	A	G	805	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=1.439;QD=13.64;ReadPosRankSum=1.674;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:93:838,93,0
chrXVI	500000	.	G	A	1170	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.42;MQ0=0;QD=19.50;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1203,126,0
chrXVI	500007	.	G	A	1040	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.27;MQ0=0;QD=19.26;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1073,114,0
chrXVI	500189	.	A	G	1783	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=23.16;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1816,198,0
chrXVI	500244	.	C	T	2332	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=24.29;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2365,252,0
chrXVI	500345	.	T	A	2100	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.4433;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=19.27;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2133,228,0
chrXVI	500351	.	C	T	1966	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.9772;MLEAC=2;MLEAF=1.00;MQ=52.08;MQ0=0;QD=17.87;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1999,210,0
chrXVI	500426	.	C	G	2102	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.61;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2135,240,0
chrXVI	500683	.	C	T	3456.01	PASS	AC=2;AF=1.00;AN=2;DP=140;Dels=0.00;FS=0.000;HaplotypeScore=5.0544;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=24.69;SB=-1.507e+03	GT:AD:DP:GQ:PL	1/1:0,140:140:99:3456,366,0
chrXVI	500726	.	A	C	2860	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=52.61;MQ0=0;QD=23.83;SB=-1.522e+03	GT:AD:DP:GQ:PL	1/1:0,120:120:99:2893,315,0
chrXVI	500964	.	G	T	1933	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.9687;MLEAC=2;MLEAF=1.00;MQ=51.48;MQ0=0;QD=18.07;SB=-1.356e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:1966,210,0
chrXVI	500975	.	G	C	1826	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.31;MQ0=0;QD=17.23;SB=-1.311e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1859,204,0
chrXVI	500988	.	T	C	1655	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.358;DP=108;Dels=0.00;FS=7.387;HaplotypeScore=4.1445;MLEAC=2;MLEAF=1.00;MQ=44.94;MQ0=0;MQRankSum=1.323;QD=15.32;ReadPosRankSum=2.404;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:3,105:108:99:1688,186,0
chrXVI	501255	.	A	G	1801	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=17.66;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1834,204,0
chrXVI	501323	.	T	A	1955	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=9.1879;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.15;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:1988,210,0
chrXVI	501575	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=23.45;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1604,168,0
chrXVI	501709	.	G	C	1245	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=16.60;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,71:75:99:1278,141,0
chrXVI	501909	.	G	A	1274	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=21.59;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1307,141,0
chrXVI	502052	.	G	A	585	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=19.50;SB=-1.870e+02	GT:AD:DP:GQ:PL	1/1:0,30:30:69:618,69,0
chrXVI	502064	.	C	T	608	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.67;MQ0=0;QD=21.71;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,28:28:69:641,69,0
chrXVI	502088	.	C	A	709	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.16;SB=-1.050e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:81:742,81,0
chrXVI	502118	.	T	C	621	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=18.26;SB=-5.301e+01	GT:AD:DP:GQ:PL	1/1:0,33:34:72:654,72,0
chrXVI	502255	.	G	A	811	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=19.78;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:90:844,90,0
chrXVI	502697	.	G	A	46.97	filter	AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=8.3885;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=0.84;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:9:79,9,0
chrXVI	503041	.	A	T	1426	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=9.2591;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=18.76;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1459,156,0
chrXVI	503157	.	C	G	1163	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=18.46;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1196,138,0
chrXVI	503305	.	A	C	1155	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;QD=17.77;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1188,126,0
chrXVI	503313	.	A	G	1089	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=17.56;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1122,123,0
chrXVI	503314	.	A	G	1046	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=16.87;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1079,120,0
chrXVI	503888	.	T	C	1389	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=5.786;HaplotypeScore=4.9027;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=1.251;QD=19.29;ReadPosRankSum=1.684;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1422,159,0
chrXVI	504262	.	G	A	1977	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.82;SB=-1.137e+03	GT:AD:DP:GQ:PL	1/1:0,82:83:99:2010,210,0
chrXVI	504666	.	G	A	1496	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=18.47;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1529,162,0
chrXVI	505150	.	G	A	1765	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.92;SB=-6.450e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1798,189,0
chrXVI	505698	.	C	G	762	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=16.21;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:795,90,0
chrXVI	505721	.	A	G	1056	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=17.03;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1089,120,0
chrXVI	505749	.	T	C	802	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=16.37;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:835,93,0
chrXVI	505836	.	A	G	1688	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.5668;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=18.15;SB=-1.078e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1721,198,0
chrXVI	505893	.	G	A	1893	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.58;SB=-1.161e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1926,207,0
chrXVI	506058	.	T	G	1707	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.5562;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=21.07;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1740,192,0
chrXVI	506129	.	T	C	1271	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=0.115;QD=20.84;ReadPosRankSum=1.675;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1304,144,0
chrXVI	506265	.	C	A	1479	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=17.82;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1512,159,0
chrXVI	506274	.	A	C	1258	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.87;MQ0=0;MQRankSum=0.577;QD=16.77;ReadPosRankSum=1.686;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1291,147,0
chrXVI	506349	.	G	T	1617	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=21.00;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1650,177,0
chrXVI	506409	.	C	A	1459	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=17.79;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1492,165,0
chrXVI	506806	.	C	T	1444	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;QD=21.88;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1477,159,0
chrXVI	506954	.	T	C	1951	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;MQRankSum=-0.230;QD=22.95;ReadPosRankSum=1.690;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:1,82:85:99:1984,219,0
chrXVI	507005	.	A	G	1121	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;MQRankSum=-1.328;QD=18.38;ReadPosRankSum=1.675;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,59:61:99:1154,126,0
chrXVI	507023	.	A	G	885	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.65;MQ0=0;QD=13.21;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:918,102,0
chrXVI	507026	.	C	T	734	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.78;MQ0=0;QD=11.47;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:84:767,84,0
chrXVI	507047	.	A	C	1006	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=75;Dels=0.00;FS=4.279;HaplotypeScore=7.1320;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;MQRankSum=-1.640;QD=13.41;ReadPosRankSum=1.640;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1039,114,0
chrXVI	507169	.	A	G	1346	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.97;MQ0=0;MQRankSum=-0.226;QD=19.51;ReadPosRankSum=1.682;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1379,150,0
chrXVI	507218	.	C	A	1408	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=18.05;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1441,156,0
chrXVI	507220	.	A	G	1402	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=51.19;MQ0=0;MQRankSum=-1.014;QD=17.52;ReadPosRankSum=2.294;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:2,77:80:99:1435,159,0
chrXVI	507225	.	A	G	1498	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.64;MQ0=0;MQRankSum=0.425;QD=17.83;ReadPosRankSum=2.303;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:2,82:84:99:1531,171,0
chrXVI	507326	.	C	T	1688	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=22.21;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1721,186,0
chrXVI	507401	.	G	C	1493	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.8692;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=18.21;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1526,168,0
chrXVI	507608	.	A	G	1033	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.70;MQ0=0;QD=20.25;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1066,120,0
chrXVI	507635	.	T	C	1095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.10;MQ0=0;MQRankSum=0.000;QD=21.47;ReadPosRankSum=1.663;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,49:51:99:1128,123,0
chrXVI	507830	.	G	C	1656	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=23.66;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1689,186,0
chrXVI	507854	.	A	G	1352	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=21.81;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1385,153,0
chrXVI	507917	.	G	A	942	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.8347;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=20.04;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:975,108,0
chrXVI	508199	.	C	T	1730	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.37;SB=-4.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1763,183,0
chrXVI	508243	.	A	G	986	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=22.41;SB=-5.220e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:99:1019,111,0
chrXVI	508697	.	C	T	936	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.72;SB=-6.540e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:969,102,0
chrXVI	508709	.	G	A	821	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=14.93;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:90:854,90,0
chrXVI	508976	.	G	A	2235	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=8.1237;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=22.13;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2268,246,0
chrXVI	509084	.	G	A	1986	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=23.64;SB=-4.560e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:2019,213,0
chrXVI	509658	.	G	A	2201	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=7.8756;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.46;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2234,237,0
chrXVI	509810	.	T	C	1969	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=20.09;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2002,219,0
chrXVI	509832	.	C	T	1792	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=18.29;SB=-1.310e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:1825,192,0
chrXVI	509846	.	A	G	1408	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=15.30;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1441,159,0
chrXVI	510020	.	A	G	1565	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.87;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1598,174,0
chrXVI	510238	.	A	G	1689	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=22.52;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1722,183,0
chrXVI	510285	.	G	T	1322	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=22.03;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1355,144,0
chrXVI	510291	.	A	G	1375	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=23.71;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1408,150,0
chrXVI	510355	.	A	G	1043	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.73;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1076,120,0
chrXVI	510403	.	A	G	947	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-0.885;QD=21.04;ReadPosRankSum=1.655;SB=-4.310e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:99:980,108,0
chrXVI	510469	.	A	T	1209	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=21.98;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1242,129,0
chrXVI	510522	.	T	C	1986	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=22.83;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2019,225,0
chrXVI	510564	.	T	A	2463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=7.7970;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=-1.468;QD=20.70;ReadPosRankSum=1.644;SB=-1.418e+03	GT:AD:DP:GQ:PL	1/1:1,117:119:99:2496,270,0
chrXVI	510580	.	T	C	2226	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=20.42;SB=-1.113e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2259,246,0
chrXVI	510650	.	C	T	1406	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9203;MLEAC=2;MLEAF=1.00;MQ=49.81;MQ0=0;QD=19.53;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1439,153,0
chrXVI	510652	.	T	C	1340	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.9203;MLEAC=2;MLEAF=1.00;MQ=49.49;MQ0=0;MQRankSum=-0.594;QD=19.14;ReadPosRankSum=1.683;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1373,150,0
chrXVI	510663	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.03;FS=0.000;HaplotypeScore=5.9777;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=16.55;SB=-2.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1274,138,0
chrXVI	510713	.	A	T	2076	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=21.40;SB=-5.050e+02	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2109,225,0
chrXVI	510773	.	C	T	1641	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=24.13;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1674,177,0
chrXVI	510816	.	G	A	1310	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=3.559;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=0.147;QD=22.20;ReadPosRankSum=0.617;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1343,141,0
chrXVI	510985	.	A	G	2098	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.7120;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=23.31;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2131,234,0
chrXVI	511038	.	C	T	2658	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=23.11;SB=-1.043e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2691,285,0
chrXVI	511406	.	A	G	635	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=14.43;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:75:668,75,0
chrXVI	511425	.	T	A	670	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=16.34;SB=-2.290e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:703,75,0
chrXVI	511469	.	A	T	887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;MQRankSum=-1.298;QD=19.71;ReadPosRankSum=2.220;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:920,99,0
chrXVI	511583	.	T	C	398	PASS	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=15.92;SB=-8.001e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:48:431,48,0
chrXVI	511623	.	T	A	357	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=14.28;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:42:390,42,0
chrXVI	511625	.	C	T	364	SnpCluster	AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.33;MQ0=0;QD=14.56;SB=-8.501e+01	GT:AD:DP:GQ:PL	1/1:0,25:25:42:397,42,0
chrXVI	511628	.	T	G	330	SnpCluster	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;QD=14.35;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,23:23:39:363,39,0
chrXVI	511707	.	C	G	849	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=16.33;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,51:52:96:882,96,0
chrXVI	511744	.	T	A	812	SnpCluster	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.39;MQ0=0;QD=14.25;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:90:845,90,0
chrXVI	511751	.	A	C	742	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=14.84;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:84:775,84,0
chrXVI	511752	.	A	C	755	SnpCluster	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=15.10;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:87:788,87,0
chrXVI	511769	.	T	A	824	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=-1.121;QD=16.16;ReadPosRankSum=1.664;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:1,50:51:93:857,93,0
chrXVI	511842	.	C	A	975	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=24.37;SB=-1.090e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1008,108,0
chrXVI	511946	.	G	A	742	PASS	AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=23.94;SB=-1.940e+02	GT:AD:DP:GQ:PL	1/1:0,31:31:81:775,81,0
chrXVI	511983	.	T	A	642	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=21.40;SB=-2.730e+02	GT:AD:DP:GQ:PL	1/1:1,29:30:72:675,72,0
chrXVI	512028	.	C	T	810	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.13;MQ0=0;QD=19.29;SB=-8.101e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:93:843,93,0
chrXVI	512102	.	T	A	767	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=20.18;SB=-2.790e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:800,84,0
chrXVI	512105	.	C	T	689	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=19.69;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:722,81,0
chrXVI	512148	.	T	C	659	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=19.38;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:78:692,78,0
chrXVI	512216	.	A	C	1357	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=20.88;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1390,150,0
chrXVI	512517	.	C	T	1709	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4539;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.79;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1742,186,0
chrXVI	512760	.	T	C	2428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=9.0786;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-0.217;QD=21.49;ReadPosRankSum=1.701;SB=-1.067e+03	GT:AD:DP:GQ:PL	1/1:1,111:113:99:2461,273,0
chrXVI	512940	.	G	A	1689	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.4637;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=19.41;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1722,183,0
chrXVI	513417	.	G	A	1738	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.5636;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.689;QD=19.98;ReadPosRankSum=1.048;SB=-9.420e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1771,171,0
chrXVI	513619	.	G	A	1798	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=23.66;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1831,192,0
chrXVI	513862	.	T	C	1137	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=3.906;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.499;QD=18.95;ReadPosRankSum=1.556;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1170,132,0
chrXVI	514290	.	T	A	1585	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.58;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1618,180,0
chrXVI	514323	.	C	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.86;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1639,180,0
chrXVI	514359	.	A	G	1790	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;MQRankSum=-1.074;QD=22.66;ReadPosRankSum=1.688;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1823,201,0
chrXVI	514428	.	T	C	2886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.404;DP=158;Dels=0.00;FS=13.369;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=0.570;QD=18.27;ReadPosRankSum=3.348;SB=-1.786e+03	GT:AD:DP:GQ:PL	1/1:4,154:158:99:2919,330,0
chrXVI	514433	.	A	G	2784	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=157;Dels=0.00;FS=2.992;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.31;MQ0=0;MQRankSum=0.327;QD=17.73;ReadPosRankSum=2.402;SB=-1.749e+03	GT:AD:DP:GQ:PL	1/1:2,152:157:99:2817,312,0
chrXVI	514493	.	T	C	3007	PASS	AC=2;AF=1.00;AN=2;DP=145;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.74;SB=-1.787e+03	GT:AD:DP:GQ:PL	1/1:0,144:145:99:3040,339,0
chrXVI	514583	.	A	G	790	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.35;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:96:823,96,0
chrXVI	514990	.	G	A	942	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=22.98;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:975,105,0
chrXVI	515057	.	T	C	1092	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=5.6668;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=19.85;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1125,123,0
chrXVI	515138	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=21.81;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1494,168,0
chrXVI	515185	.	C	T	1274	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=19.30;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1307,138,0
chrXVI	515189	.	G	A	1241	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=51.35;MQ0=0;QD=19.70;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1274,135,0
chrXVI	515196	.	T	C	893	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.6722;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=14.17;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:926,102,0
chrXVI	515243	.	A	G	1093	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.537;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;MQRankSum=0.445;QD=15.61;ReadPosRankSum=1.683;SB=-7.960e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1126,126,0
chrXVI	515495	.	C	G	1633	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=56.91;MQ0=0;QD=19.44;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1666,183,0
chrXVI	516047	.	T	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.67;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1335,147,0
chrXVI	516356	.	C	T	1437	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.77;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1470,156,0
chrXVI	516710	.	T	C	1142	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.39;SB=-6.490e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1175,129,0
chrXVI	516780	.	T	C	1492	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.474;QD=22.27;ReadPosRankSum=1.681;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1525,168,0
chrXVI	516903	.	C	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=21.90;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1128,117,0
chrXVI	517099	.	C	G	1113	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=18.25;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1146,126,0
chrXVI	517188	.	C	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=18.84;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1069,114,0
chrXVI	517281	.	T	C	1050	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=0.733;QD=20.19;ReadPosRankSum=1.666;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1083,120,0
chrXVI	517540	.	A	G	1969	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.95;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2002,222,0
chrXVI	517615	.	G	T	2313	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=22.90;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2346,252,0
chrXVI	517746	.	A	G	1471	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.72;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1504,168,0
chrXVI	517881	.	G	A	1961	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=21.32;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1994,210,0
chrXVI	517980	.	C	T	1791	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.05;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1824,192,0
chrXVI	518014	.	C	G	1876	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.8535;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=18.39;SB=-1.125e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:1909,213,0
chrXVI	518057	.	A	T	1983	PASS	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=7.3663;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.44;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2016,213,0
chrXVI	518836	.	A	G	1494	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.15;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1527,168,0
chrXVI	519322	.	A	G	2246	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=5.9042;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.661;QD=22.92;ReadPosRankSum=1.696;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:1,96:98:99:2279,246,0
chrXVI	520400	.	T	C	933	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=19.85;SB=-3.100e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:966,102,0
chrXVI	520404	.	G	A	900	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=19.15;SB=-3.000e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:933,99,0
chrXVI	520764	.	G	A	52.97	PASS	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=10.59;SB=-4.657e-01	GT:AD:DP:GQ:PL	1/1:0,5:5:9:85,9,0
chrXVI	520832	.	T	C	258	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=17.20;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,15:15:30:291,30,0
chrXVI	521292	.	T	C	892	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=49.30;MQ0=0;QD=21.24;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:925,102,0
chrXVI	521626	.	C	A	1489	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.56;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1522,165,0
chrXVI	521945	.	C	G	2766	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=6.0069;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.95;SB=-1.293e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2799,306,0
chrXVI	522090	.	G	A	262.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;DP=86;Dels=0.05;FS=5.986;HaplotypeScore=39.4490;MLEAC=1;MLEAF=0.500;MQ=42.09;MQ0=0;MQRankSum=-4.106;QD=3.05;ReadPosRankSum=1.209;SB=-3.420e+02	GT:AD:DP:GQ:PL	0/1:47,35:82:99:292,0,373
chrXVI	522094	.	A	C	194.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DP=80;Dels=0.04;FS=4.999;HaplotypeScore=33.5553;MLEAC=1;MLEAF=0.500;MQ=44.10;MQ0=0;MQRankSum=-3.991;QD=2.43;ReadPosRankSum=1.232;SB=-2.350e+02	GT:AD:DP:GQ:PL	0/1:50,26:77:99:224,0,459
chrXVI	522096	.	T	G	163.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;DP=85;Dels=0.05;FS=3.448;HaplotypeScore=35.3808;MLEAC=1;MLEAF=0.500;MQ=45.19;MQ0=0;MQRankSum=-4.744;QD=1.92;ReadPosRankSum=1.432;SB=-2.240e+02	GT:AD:DP:GQ:PL	0/1:55,25:81:99:193,0,508
chrXVI	522099	.	A	G	146.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.982;DP=88;Dels=0.00;FS=4.811;HaplotypeScore=36.2447;MLEAC=1;MLEAF=0.500;MQ=45.77;MQ0=0;MQRankSum=-5.314;QD=1.66;ReadPosRankSum=1.534;SB=-2.090e+02	GT:AD:DP:GQ:PL	0/1:62,25:88:99:176,0,647
chrXVI	522102	.	A	G	133.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.574;DP=90;Dels=0.00;FS=4.723;HaplotypeScore=26.2240;MLEAC=1;MLEAF=0.500;MQ=46.14;MQ0=0;MQRankSum=-4.669;QD=1.48;ReadPosRankSum=0.698;SB=-1.880e+02	GT:AD:DP:GQ:PL	0/1:65,25:90:99:163,0,714
chrXVI	522104	.	C	A,T	943.01	SnpCluster	AC=1,1;AF=0.500,0.500;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.7689;MLEAC=1,1;MLEAF=0.500,0.500;MQ=47.12;MQ0=0;QD=10.72;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/2:0,28,60:88:99:1003,755,725,248,0,152
chrXVI	522105	.	A	G	84.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.475;DP=88;Dels=0.00;FS=4.961;HaplotypeScore=19.7115;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-5.023;QD=0.95;ReadPosRankSum=-0.567;SB=-1.900e+02	GT:AD:DP:GQ:PL	0/1:63,25:88:99:114,0,786
chrXVI	522108	.	A	G	125.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.630;DP=88;Dels=0.00;FS=1.965;HaplotypeScore=15.1069;MLEAC=1;MLEAF=0.500;MQ=47.45;MQ0=0;MQRankSum=-5.639;QD=1.42;ReadPosRankSum=-2.119;SB=-2.030e+02	GT:AD:DP:GQ:PL	0/1:60,28:88:99:155,0,849
chrXVI	522118	.	C	A	76.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.913;DP=84;Dels=0.00;FS=1.054;HaplotypeScore=13.2205;MLEAC=1;MLEAF=0.500;MQ=50.16;MQ0=0;MQRankSum=-5.132;QD=0.90;ReadPosRankSum=-4.138;SB=-1.140e+02	GT:AD:DP:GQ:PL	0/1:65,19:84:99:106,0,924
chrXVI	522120	.	G	T	73.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.2179;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=0;MQRankSum=-5.276;QD=0.87;ReadPosRankSum=-4.669;SB=-8.101e+01	GT:AD:DP:GQ:PL	0/1:65,18:84:99:103,0,968
chrXVI	523110	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=19.30;SB=-9.850e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1635,171,0
chrXVI	523433	.	C	G	1168	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=20.14;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1201,132,0
chrXVI	523446	.	G	A	1265	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.08;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1298,138,0
chrXVI	523583	.	C	T	1588	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.35;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1621,174,0
chrXVI	523689	.	G	A	1440	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=18.95;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1473,156,0
chrXVI	523692	.	T	C	1368	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=54.63;MQ0=0;QD=19.54;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1401,159,0
chrXVI	523749	.	T	C	943	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;DP=52;Dels=0.00;FS=3.070;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;MQRankSum=-1.784;QD=18.13;ReadPosRankSum=2.355;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:2,50:52:99:976,108,0
chrXVI	526381	.	A	G	759	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=18.97;SB=-4.160e+02	GT:AD:DP:GQ:PL	1/1:0,39:40:87:792,87,0
chrXVI	526767	.	A	G	598	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.59;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,33:34:72:631,72,0
chrXVI	527231	.	G	A	1298	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0947;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=19.97;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1331,141,0
chrXVI	527307	.	T	C	1007	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.594;DP=52;Dels=0.00;FS=4.437;HaplotypeScore=3.2054;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=-0.346;QD=19.37;ReadPosRankSum=1.663;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:1,50:52:99:1040,114,0
chrXVI	527431	.	G	A	2739	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.99;SB=-1.684e+03	GT:AD:DP:GQ:PL	1/1:0,136:137:99:2772,306,0
chrXVI	528593	.	T	C	2767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=124;Dels=0.00;FS=2.567;HaplotypeScore=5.3104;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;MQRankSum=-0.764;QD=22.31;ReadPosRankSum=2.390;SB=-1.047e+03	GT:AD:DP:GQ:PL	1/1:2,122:124:99:2800,312,0
chrXVI	529663	.	G	A	1439	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.9835;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=23.98;SB=-4.660e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1472,156,0
chrXVI	530286	.	A	G	1386	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.9957;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.38;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1419,162,0
chrXVI	530370	.	A	G	1599	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.2814;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.710;QD=19.27;ReadPosRankSum=2.388;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:2,78:83:99:1632,177,0
chrXVI	530807	.	G	C	1535	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.74;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1568,171,0
chrXVI	531193	.	A	G	1304	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.37;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1337,147,0
chrXVI	531957	.	G	A	1273	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=20.53;SB=-7.390e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1306,141,0
chrXVI	532319	.	T	C	1235	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.45;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1268,138,0
chrXVI	533286	.	A	C	729	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.70;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,37:37:84:762,84,0
chrXVI	533472	.	T	A	558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=37;Dels=0.00;FS=10.792;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.385;QD=15.08;ReadPosRankSum=1.636;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:1,36:37:63:591,63,0
chrXVI	533561	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=25.84;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1635,171,0
chrXVI	533565	.	G	A	1480	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=23.12;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1513,159,0
chrXVI	533888	.	T	G	1958	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.170;DP=88;Dels=0.00;FS=2.916;HaplotypeScore=11.1195;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=-1.806;QD=22.25;ReadPosRankSum=2.338;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:2,86:88:99:1991,216,0
chrXVI	534427	.	A	C	1652	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.67;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1685,189,0
chrXVI	534572	.	C	T	1800	SnpCluster	AC=2;AF=1.00;AN=2;DP=99;Dels=0.02;FS=0.000;HaplotypeScore=2.9224;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=18.18;SB=-9.920e+02	GT:AD:DP:GQ:PL	1/1:0,94:97:99:1833,204,0
chrXVI	534574	.	A	G	1847	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.864;DP=96;Dels=0.00;FS=5.262;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;MQRankSum=-0.379;QD=19.24;ReadPosRankSum=2.801;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:3,93:96:99:1880,204,0
chrXVI	534581	.	T	C	1844	SnpCluster	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.31;MQ0=0;QD=18.63;SB=-1.055e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1877,210,0
chrXVI	534748	.	A	T	1383	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;MQRankSum=1.147;QD=17.96;ReadPosRankSum=-0.157;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1416,156,0
chrXVI	534749	.	G	A	1317	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=17.80;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1350,150,0
chrXVI	534894	.	T	C	1178	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=12.5992;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=18.41;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1211,141,0
chrXVI	535611	.	A	G	1508	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.916;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=9.6102;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.842;QD=17.74;ReadPosRankSum=2.769;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:3,80:85:99:1541,171,0
chrXVI	535979	.	G	T	1637	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.96;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1670,177,0
chrXVI	536747	.	T	C	1099.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.491;DP=170;Dels=0.00;FS=8.193;HaplotypeScore=95.3458;MLEAC=1;MLEAF=0.500;MQ=57.96;MQ0=2;MQRankSum=2.352;QD=6.46;ReadPosRankSum=1.805;SB=-4.420e+02	GT:AD:DP:GQ:PL	0/1:99,71:170:99:1129,0,792
chrXVI	536756	.	C	T	2157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;DP=164;Dels=0.01;FS=86.811;HaplotypeScore=91.4540;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=1;MQRankSum=-0.349;QD=13.15;ReadPosRankSum=4.730;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:24,138:163:99:2190,240,0
chrXVI	539891	.	G	C	1854	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.8431;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=21.81;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1887,204,0
chrXVI	540311	.	C	G	2598	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=7.2426;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=21.65;SB=-1.451e+03	GT:AD:DP:GQ:PL	1/1:0,117:120:99:2631,294,0
chrXVI	541496	.	T	G	896	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:929,102,0
chrXVI	542298	.	T	C	1858	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=20.64;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1891,204,0
chrXVI	542310	.	C	T	1732	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.68;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1765,192,0
chrXVI	543937	.	A	G	2088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;DP=97;Dels=0.00;FS=9.725;HaplotypeScore=7.8321;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;MQRankSum=-0.698;QD=21.53;ReadPosRankSum=2.399;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2121,234,0
chrXVI	544533	.	A	G	2185	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;MQRankSum=-1.663;QD=21.63;ReadPosRankSum=1.559;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:1,99:101:99:2218,237,0
chrXVI	547310	.	C	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.42;SB=-1.041e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1687,183,0
chrXVI	549139	.	G	C	1223	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.84;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1256,138,0
chrXVI	549254	.	A	G	1365	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.75;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1398,153,0
chrXVI	549906	.	G	C	734	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.59;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:84:767,84,0
chrXVI	550760	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.571;HaplotypeScore=4.2925;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.050;QD=19.35;ReadPosRankSum=1.627;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1310,147,0
chrXVI	550866	.	G	A	1100	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.00;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1133,126,0
chrXVI	551247	.	G	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=21.76;SB=-8.770e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1687,192,0
chrXVI	553465	.	G	A	2132	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.2445;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=24.51;SB=-1.172e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2165,228,0
chrXVI	554350	.	C	A	1606	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.2221;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=20.33;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1639,171,0
chrXVI	554599	.	A	G	2767	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=127;Dels=0.00;FS=3.556;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;MQRankSum=-0.259;QD=21.79;ReadPosRankSum=1.650;SB=-1.387e+03	GT:AD:DP:GQ:PL	1/1:1,126:127:99:2800,318,0
chrXVI	554689	.	G	A	1799	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.55;SB=-1.026e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1832,207,0
chrXVI	555508	.	C	T	714	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=17.00;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:78:747,78,0
chrXVI	556159	.	A	G	839	filter	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.97;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,34:35:99:872,99,0
chrXVI	556778	.	C	A	1279	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=17.52;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1312,144,0
chrXVI	558975	.	A	C	2205	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.21;SB=-4.680e+02	GT:AD:DP:GQ:PL	1/1:0,92:95:99:2238,249,0
chrXVI	560045	.	G	T	1119	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.11;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1152,126,0
chrXVI	560326	.	C	T	1798	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.46;MQ0=0;QD=23.66;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1831,198,0
chrXVI	564703	.	T	C	1225	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=66;Dels=0.00;FS=3.041;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=56.48;MQ0=0;MQRankSum=0.804;QD=18.56;ReadPosRankSum=2.375;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1258,141,0
chrXVI	564724	.	T	C	1320	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.2859;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;MQRankSum=-1.319;QD=19.70;ReadPosRankSum=1.681;SB=-6.900e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1353,153,0
chrXVI	566170	.	A	T	961	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.497;DP=60;Dels=0.02;FS=3.237;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.851;QD=16.02;ReadPosRankSum=1.615;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:994,105,0
chrXVI	566316	.	G	A	1470	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=18.85;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1503,168,0
chrXVI	566571	.	A	G	1175	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=0.279;QD=18.95;ReadPosRankSum=1.621;SB=-7.290e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1208,132,0
chrXVI	566724	.	A	G	2678	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=123;Dels=0.00;FS=3.118;HaplotypeScore=11.5806;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.619;QD=21.77;ReadPosRankSum=1.704;SB=-1.520e+03	GT:AD:DP:GQ:PL	1/1:1,122:123:99:2711,300,0
chrXVI	567809	.	A	G	1341	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0480;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=20.63;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1374,156,0
chrXVI	571946	.	C	T	2195	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=23.86;SB=-1.096e+03	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2228,237,0
chrXVI	574886	.	A	G	538	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.05;MQ0=0;QD=9.12;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:63:571,63,0
chrXVI	578065	.	G	A	1662	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3586;MLEAC=2;MLEAF=1.00;MQ=58.56;MQ0=0;QD=20.52;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1695,180,0
chrXVI	581662	.	T	G	1793	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.638;QD=23.29;ReadPosRankSum=1.687;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1826,195,0
chrXVI	581829	.	A	G	1899	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=84;Dels=0.00;FS=15.640;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=0.603;QD=22.61;ReadPosRankSum=2.917;SB=-5.940e+02	GT:AD:DP:GQ:PL	1/1:3,81:84:99:1932,213,0
chrXVI	584269	.	T	A	1291	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.65;SB=-4.510e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1324,141,0
chrXVI	584312	.	G	A	1571	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=20.95;SB=-6.970e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1604,171,0
chrXVI	584582	.	T	C	2181	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.375;DP=99;Dels=0.00;FS=3.054;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.908;QD=22.03;ReadPosRankSum=2.400;SB=-1.207e+03	GT:AD:DP:GQ:PL	1/1:2,97:99:99:2214,246,0
chrXVI	585153	.	A	G	1695	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.679;DP=89;Dels=0.00;FS=5.001;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.915;QD=19.04;ReadPosRankSum=3.733;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:5,84:89:99:1728,189,0
chrXVI	585920	.	A	G	1530	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=20.96;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1563,171,0
chrXVI	586856	.	G	C	1475	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=23.41;SB=-7.120e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1508,162,0
chrXVI	586864	.	A	G	1173	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.371;DP=62;Dels=0.00;FS=3.008;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;MQRankSum=0.259;QD=18.92;ReadPosRankSum=2.251;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1206,132,0
chrXVI	586960	.	A	C	1532	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=23.94;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1565,171,0
chrXVI	587188	.	G	T	916	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.34;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:949,102,0
chrXVI	587583	.	G	C	729	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.83;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:84:762,84,0
chrXVI	587661	.	A	T	2709	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-1.175;QD=24.19;ReadPosRankSum=1.701;SB=-1.489e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2742,294,0
chrXVI	588888	.	C	T	1510	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=20.68;SB=-9.240e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1543,165,0
chrXVI	588966	.	C	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=19.67;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1331,141,0
chrXVI	588991	.	A	G	1317	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.26;SB=-5.330e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1350,150,0
chrXVI	591000	.	A	G	1088	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.906;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;MQRankSum=-0.635;QD=14.51;ReadPosRankSum=2.906;SB=-2.440e+02	GT:AD:DP:GQ:PL	1/1:3,72:75:99:1121,123,0
chrXVI	591009	.	C	T	1186	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=15.81;SB=-3.990e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1219,129,0
chrXVI	591334	.	G	A	891	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=24.75;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:99:924,102,0
chrXVI	591435	.	C	T	723	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=20.66;SB=-1.740e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:81:756,81,0
chrXVI	591540	.	G	A	685	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=17.12;SB=-1.290e+02	GT:AD:DP:GQ:PL	1/1:0,38:40:78:718,78,0
chrXVI	591574	.	A	G	880	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;MQRankSum=-1.511;QD=18.72;ReadPosRankSum=1.585;SB=-2.280e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:913,102,0
chrXVI	591603	.	T	G	889	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.76;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:922,102,0
chrXVI	591748	.	T	C	749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.321;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;MQRankSum=-0.294;QD=19.71;ReadPosRankSum=2.321;SB=-7.401e+01	GT:AD:DP:GQ:PL	1/1:2,36:38:87:782,87,0
chrXVI	591790	.	A	G	832	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=20.80;SB=-7.301e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:96:865,96,0
chrXVI	591791	.	C	T	842	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.02;MQ0=0;QD=21.05;SB=-7.501e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:96:875,96,0
chrXVI	591826	.	A	G	1368	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=52.53;MQ0=0;QD=21.05;SB=-7.701e+01	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1401,159,0
chrXVI	591845	.	T	A	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.264;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;MQRankSum=0.864;QD=22.19;ReadPosRankSum=2.310;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:2,51:53:99:1209,129,0
chrXVI	591899	.	G	A	1194	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=24.37;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1227,129,0
chrXVI	591926	.	A	G	1026	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=23.32;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1059,117,0
chrXVI	591978	.	G	A	801	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=22.25;SB=-2.820e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:87:834,87,0
chrXVI	591996	.	G	A	828	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=21.79;SB=-3.390e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:93:861,93,0
chrXVI	592063	.	A	C	1024	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=18.29;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1057,117,0
chrXVI	592088	.	C	A	1023	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;QD=14.21;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1056,114,0
chrXVI	592112	.	G	A	944	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=47.02;MQ0=0;QD=10.85;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:977,105,0
chrXVI	592115	.	A	G	848	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.9667;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=9.64;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:881,99,0
chrXVI	597046	.	C	T	1777	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=22.21;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1810,195,0
chrXVI	599378	.	G	A	2479	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.4028;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.39;SB=-1.245e+03	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2512,267,0
chrXVI	599525	.	T	G	1685	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=20.80;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1718,186,0
chrXVI	600132	.	G	C	1440	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=24.00;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1473,162,0
chrXVI	600285	.	T	G	2276	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=21.47;SB=-9.570e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2309,249,0
chrXVI	600385	.	A	G	791	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.260;DP=39;Dels=0.00;FS=3.123;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;MQRankSum=-0.860;QD=20.28;ReadPosRankSum=2.197;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:2,37:39:93:824,93,0
chrXVI	600670	.	G	A	1602	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.65;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1635,171,0
chrXVI	600877	.	C	A	532	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=15.65;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:63:565,63,0
chrXVI	600897	.	A	G	679	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.72;MQ0=0;QD=16.56;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:75:712,75,0
chrXVI	602623	.	C	T	1585	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.97;SB=-6.730e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1618,174,0
chrXVI	603616	.	G	A	2919	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.517;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=10.3796;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-0.738;QD=22.11;ReadPosRankSum=1.168;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:1,130:132:99:2952,327,0
chrXVI	603836	.	A	T	3492.01	PASS	AC=2;AF=1.00;AN=2;DP=150;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.28;SB=-2.042e+03	GT:AD:DP:GQ:PL	1/1:0,150:150:99:3492,369,0
chrXVI	604022	.	G	A	1459	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=22.80;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1492,162,0
chrXVI	604091	.	C	T	2583	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=23.27;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2616,279,0
chrXVI	604106	.	G	T	2634	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.21;MQ0=0;QD=22.32;SB=-1.347e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2667,285,0
chrXVI	605672	.	T	C	711	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=17.77;SB=-4.350e+02	GT:AD:DP:GQ:PL	1/1:0,38:40:81:744,81,0
chrXVI	606386	.	C	T	843	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8781;MLEAC=2;MLEAF=1.00;MQ=45.26;MQ0=0;QD=13.17;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:93:876,93,0
chrXVI	606392	.	C	T	260.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;DP=61;Dels=0.00;FS=2.212;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=44.40;MQ0=0;MQRankSum=-3.294;QD=4.26;ReadPosRankSum=-4.421;SB=-1.970e+02	GT:AD:DP:GQ:PL	0/1:35,24:61:99:290,0,276
chrXVI	606398	.	C	T	233.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;DP=57;Dels=0.00;FS=2.277;HaplotypeScore=1.7273;MLEAC=1;MLEAF=0.500;MQ=43.66;MQ0=0;MQRankSum=-2.975;QD=4.09;ReadPosRankSum=-6.024;SB=-1.890e+02	GT:AD:DP:GQ:PL	0/1:35,22:57:99:263,0,291
chrXVI	606404	.	C	T	157.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;DP=57;Dels=0.00;FS=2.475;HaplotypeScore=0.9933;MLEAC=1;MLEAF=0.500;MQ=44.75;MQ0=0;MQRankSum=-3.916;QD=2.75;ReadPosRankSum=-4.701;SB=-1.310e+02	GT:AD:DP:GQ:PL	0/1:40,17:57:99:187,0,308
chrXVI	606814	.	C	T	941	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=21.88;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:974,102,0
chrXVI	606832	.	C	G	671	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=16.37;SB=-4.070e+02	GT:AD:DP:GQ:PL	1/1:0,37:41:78:704,78,0
chrXVI	607353	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.11;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1363,153,0
chrXVI	607478	.	A	C	103.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.987;DP=123;Dels=0.00;FS=22.827;HaplotypeScore=472.8550;MLEAC=1;MLEAF=0.500;MQ=55.51;MQ0=0;MQRankSum=1.200;QD=0.84;ReadPosRankSum=-4.137;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:112,10:123:99:133,0,173
chrXVI	607854	.	C	T	946	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7198;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=15.02;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:979,108,0
chrXVI	608420	.	T	A	940	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=20.00;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:973,102,0
chrXVI	608778	.	C	T	1449	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.95;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1482,159,0
chrXVI	609546	.	A	G	385	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=12.03;SB=-3.370e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:45:418,45,0
chrXVI	609547	.	A	G	381	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.14;MQ0=0;QD=11.91;SB=-3.530e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:45:414,45,0
chrXVI	610056	.	C	T	1680	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=21.82;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1713,180,0
chrXVI	610123	.	A	T	1595	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1386;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=18.76;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1628,174,0
chrXVI	610143	.	G	T	1227	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.6342;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=16.81;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1260,135,0
chrXVI	610223	.	C	T	1009	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=5.4769;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=19.78;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1042,111,0
chrXVI	610298	.	G	A	1085	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=9.5530;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=18.39;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1118,120,0
chrXVI	610543	.	T	C	1055	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.10;SB=-5.200e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1088,117,0
chrXVI	610743	.	C	A	1531	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.69;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1564,165,0
chrXVI	611083	.	T	C	1101	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.98;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1134,126,0
chrXVI	611497	.	T	G	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.879;DP=40;Dels=0.00;FS=38.377;HaplotypeScore=4.8354;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=1.817;QD=0.33;ReadPosRankSum=-0.788;SB=-5.833e-03	GT:AD:DP:GQ:PL	0/1:29,10:40:43:43,0,382
chrXVI	612448	.	C	T	1939	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.8216;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.36;SB=-8.430e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1972,210,0
chrXVI	613884	.	G	A	1469	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=21.93;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1502,159,0
chrXVI	613944	.	C	T	1022	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=20.44;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1055,114,0
chrXVI	614016	.	G	A	1524	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=23.81;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1557,165,0
chrXVI	614103	.	A	G	1613	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.72;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1646,177,0
chrXVI	614283	.	A	G	1285	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=23.36;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1318,141,0
chrXVI	614501	.	A	T	2000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=3.979;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=1.540;QD=22.22;ReadPosRankSum=1.694;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2033,216,0
chrXVI	614587	.	T	C	2650	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.537;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.2927;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;MQRankSum=-1.145;QD=21.37;ReadPosRankSum=1.704;SB=-1.074e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2683,294,0
chrXVI	614631	.	C	G	2405	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.91;SB=-1.034e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2438,270,0
chrXVI	614654	.	A	T	2104	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=5.488;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;MQRankSum=0.904;QD=22.87;ReadPosRankSum=1.694;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2137,225,0
chrXVI	614701	.	A	G	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;DP=54;Dels=0.00;FS=10.635;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=56.21;MQ0=0;MQRankSum=-1.174;QD=17.06;ReadPosRankSum=2.868;SB=-5.740e+02	GT:AD:DP:GQ:PL	1/1:3,50:54:99:954,108,0
chrXVI	614813	.	G	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.03;FS=0.000;HaplotypeScore=22.6080;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=15.84;SB=-1.144e+03	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1506,168,0
chrXVI	614818	.	C	T	1615	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=18.9412;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=16.31;SB=-1.217e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1648,174,0
chrXVI	614926	.	T	C	2995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;DP=145;Dels=0.00;FS=6.115;HaplotypeScore=14.1131;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;MQRankSum=0.072;QD=20.66;ReadPosRankSum=2.950;SB=-1.740e+03	GT:AD:DP:GQ:PL	1/1:3,137:145:99:3028,333,0
chrXVI	615151	.	A	C	1125	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=17.58;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1158,123,0
chrXVI	615159	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.9439;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=16.03;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1299,138,0
chrXVI	615302	.	T	C	715	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=75;Dels=0.00;FS=4.199;HaplotypeScore=4.9679;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;MQRankSum=-0.366;QD=9.53;ReadPosRankSum=1.635;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:1,70:75:81:748,81,0
chrXVI	615308	.	G	C	783	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.3008;MLEAC=2;MLEAF=1.00;MQ=47.66;MQ0=0;MQRankSum=-0.990;QD=11.03;ReadPosRankSum=-1.237;SB=-7.450e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:90:816,90,0
chrXVI	615310	.	C	T	838	SnpCluster	AC=2;AF=1.00;AN=2;DP=73;Dels=0.01;FS=0.000;HaplotypeScore=15.0615;MLEAC=2;MLEAF=1.00;MQ=48.04;MQ0=0;QD=11.48;SB=-8.080e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:90:871,90,0
chrXVI	615470	.	G	A	1475	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4769;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.79;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1508,159,0
chrXVI	615756	.	T	C	2081	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.308;QD=23.12;ReadPosRankSum=1.655;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2114,243,0
chrXVI	615999	.	T	C	1900	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.6640;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-9.700e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1933,213,0
chrXVI	616149	.	C	T	2393	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=21.56;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:0,107:111:99:2426,255,0
chrXVI	616401	.	T	C	2346	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.1188;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.34;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2379,261,0
chrXVI	616422	.	T	G	1654	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.76;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1687,186,0
chrXVI	616569	.	G	A	4444.01	PASS	AC=2;AF=1.00;AN=2;DP=178;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.97;SB=-2.064e+03	GT:AD:DP:GQ:PL	1/1:0,178:178:99:4444,475,0
chrXVI	616661	.	G	A	2343	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=25.47;SB=-1.031e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2376,249,0
chrXVI	616836	.	T	C	1781	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.523;DP=84;Dels=0.00;FS=3.280;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.605;QD=21.20;ReadPosRankSum=1.649;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:1,82:84:99:1814,198,0
chrXVI	616899	.	T	C	2080	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.3254;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=19.44;SB=-6.660e+02	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2113,237,0
chrXVI	617121	.	T	C	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.265;DP=80;Dels=0.00;FS=3.055;HaplotypeScore=10.5600;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.094;QD=18.52;ReadPosRankSum=2.388;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:2,78:80:99:1515,168,0
chrXVI	617352	.	C	T	687	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=17.17;SB=-3.980e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:720,81,0
chrXVI	617481	.	T	C	1053	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.16;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1086,120,0
chrXVI	617643	.	G	A	2038	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=24.85;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2071,219,0
chrXVI	618129	.	A	G	1552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=3.720;HaplotypeScore=5.7055;MLEAC=2;MLEAF=1.00;MQ=60.15;MQ0=0;MQRankSum=0.119;QD=21.26;ReadPosRankSum=1.685;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1585,171,0
chrXVI	618231	.	C	T	1122	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=19.68;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1155,123,0
chrXVI	618312	.	T	C	1141	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.082;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;MQRankSum=0.653;QD=18.70;ReadPosRankSum=1.675;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1174,132,0
chrXVI	618453	.	G	A	1393	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=20.49;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1426,153,0
chrXVI	618585	.	G	A	1865	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=26.64;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1898,201,0
chrXVI	618772	.	A	G	1886	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=5.643;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-1.417;QD=24.49;ReadPosRankSum=1.687;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1919,216,0
chrXVI	618915	.	G	A	1295	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.33;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1328,141,0
chrXVI	619062	.	G	A	3001	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.01;FS=0.000;HaplotypeScore=2.8995;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=22.40;SB=-1.599e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3034,321,0
chrXVI	619146	.	T	C	29.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.428;DP=67;Dels=0.00;FS=3.247;HaplotypeScore=116.8887;MLEAC=1;MLEAF=0.500;MQ=51.90;MQ0=0;MQRankSum=1.548;QD=0.44;ReadPosRankSum=-4.397;SB=-2.184e-01	GT:AD:DP:GQ:PL	0/1:56,9:67:10:59,0,10
chrXVI	619169	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=22.48;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1247,144,0
chrXVI	619252	.	T	G	1294	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=20.54;SB=-4.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1327,147,0
chrXVI	619292	.	C	T	1695	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=22.01;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1728,183,0
chrXVI	619408	.	A	G	1192	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=18.62;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1225,135,0
chrXVI	619457	.	C	T	1253	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=22.78;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1286,135,0
chrXVI	619477	.	A	G	1174	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.4042;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=22.15;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1207,132,0
chrXVI	619527	.	G	T	1145	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=21.20;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1178,126,0
chrXVI	619549	.	T	C	939	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=21.34;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:972,108,0
chrXVI	619565	.	G	C	941	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;QD=18.82;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:974,108,0
chrXVI	619602	.	A	T	879	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=44.38;MQ0=0;QD=19.98;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:912,99,0
chrXVI	619612	.	A	T	894	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.96;MQ0=0;QD=19.87;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:927,99,0
chrXVI	619659	.	A	G	749	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.99;MQ0=0;MQRankSum=-1.126;QD=18.72;ReadPosRankSum=1.646;SB=-3.540e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:87:782,87,0
chrXVI	619676	.	T	G	638	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;MQRankSum=1.358;QD=17.24;ReadPosRankSum=1.639;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:1,36:37:75:671,75,0
chrXVI	619680	.	C	T	682	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.67;MQ0=0;QD=18.43;SB=-4.080e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:715,81,0
chrXVI	619704	.	A	G	877	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=19.49;SB=-4.290e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:910,102,0
chrXVI	619747	.	A	G	1087	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=20.90;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1120,123,0
chrXVI	619779	.	T	C	1138	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.49;MQ0=0;QD=21.07;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1171,129,0
chrXVI	619798	.	G	A	1011	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.66;MQ0=0;QD=21.06;SB=-5.250e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1044,111,0
chrXVI	619894	.	G	A	964	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=49.13;MQ0=0;QD=19.28;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:997,105,0
chrXVI	619910	.	C	A	852	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.38;MQ0=0;QD=19.81;SB=-4.890e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:885,96,0
chrXVI	619960	.	C	T	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.90;MQ0=0;QD=0.54;SB=-4.998e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:6:58,6,0
chrXVI	619974	.	A	G	572	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=10.79;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:66:605,66,0
chrXVI	620016	.	C	A	900	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=15.25;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:933,99,0
chrXVI	620115	.	A	G	1526	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=24.61;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1559,168,0
chrXVI	620415	.	G	A	1509	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=5.7544;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.025;QD=20.96;ReadPosRankSum=-0.879;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1542,146,0
chrXVI	620644	.	G	T	1945	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.1888;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=23.43;SB=-1.115e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1978,210,0
chrXVI	620737	.	C	T	1237	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.70;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1270,135,0
chrXVI	620821	.	G	T	1866	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=5.7547;MLEAC=2;MLEAF=1.00;MQ=57.60;MQ0=0;QD=20.73;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1899,207,0
chrXVI	620863	.	T	C	2074	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.34;MQ0=0;QD=22.54;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:2107,234,0
chrXVI	620868	.	G	C	2018	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=22.93;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2051,222,0
chrXVI	621037	.	T	A	2635	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.86;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2668,288,0
chrXVI	621160	.	G	A	1817	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=6.8878;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.42;SB=-8.050e+02	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1850,201,0
chrXVI	621305	.	T	G	2842	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.00;FS=0.000;HaplotypeScore=9.2851;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.20;SB=-1.735e+03	GT:AD:DP:GQ:PL	1/1:0,147:148:99:2875,315,0
chrXVI	621334	.	T	G	3172	PASS	AC=2;AF=1.00;AN=2;DP=154;Dels=0.00;FS=0.000;HaplotypeScore=4.1920;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.60;SB=-2.041e+03	GT:AD:DP:GQ:PL	1/1:0,153:154:99:3205,351,0
chrXVI	621480	.	T	C	1222	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=5.4586;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=20.71;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1255,141,0
chrXVI	621612	.	C	G	2003	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=11.0850;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=19.26;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,103:104:99:2036,225,0
chrXVI	621836	.	G	C	710	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=18.68;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:84:743,84,0
chrXVI	621855	.	A	T	548	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.76;MQ0=0;QD=16.61;SB=-3.350e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:63:581,63,0
chrXVI	621920	.	G	A	405	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;QD=7.64;SB=-3.720e+02	GT:AD:DP:GQ:PL	1/1:0,50:53:48:438,48,0
chrXVI	622050	.	G	A	694	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=33.21;MQ0=0;QD=17.35;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:78:727,78,0
chrXVI	622057	.	A	G	621	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=14.44;SB=-3.940e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:72:654,72,0
chrXVI	622071	.	A	G	572	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.07;MQ0=0;MQRankSum=-1.646;QD=14.30;ReadPosRankSum=1.646;SB=-4.150e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:66:605,66,0
chrXVI	622074	.	T	C	526	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.32;MQ0=0;QD=13.84;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:60:559,60,0
chrXVI	622087	.	T	G	471	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=11.21;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:57:504,57,0
chrXVI	622097	.	T	A	451	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=4.150;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;MQRankSum=-1.733;QD=11.27;ReadPosRankSum=1.644;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:51:484,51,0
chrXVI	622243	.	T	C	1131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;MQRankSum=-0.163;QD=21.34;ReadPosRankSum=1.667;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1164,126,0
chrXVI	622365	.	G	C	993	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.44;MQ0=0;QD=18.74;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1026,114,0
chrXVI	622376	.	A	C	970	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.10;MQ0=0;QD=19.02;SB=-4.720e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1003,108,0
chrXVI	622409	.	G	T	639	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=13.04;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:72:672,72,0
chrXVI	622429	.	A	G	659	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=39.30;MQ0=0;QD=12.92;SB=-3.380e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:78:692,78,0
chrXVI	622481	.	A	G	1536	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=5.898;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.52;MQ0=0;MQRankSum=1.435;QD=21.94;ReadPosRankSum=1.683;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1569,171,0
chrXVI	622681	.	G	C	1362	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=45.43;MQ0=0;QD=20.33;SB=-8.390e+02	GT:AD:DP:GQ:PL	1/1:0,65:67:99:1395,156,0
chrXVI	622687	.	A	T	1378	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.0641;MLEAC=2;MLEAF=1.00;MQ=44.75;MQ0=0;QD=19.14;SB=-8.140e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1411,159,0
chrXVI	622734	.	T	G	1553	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=42.67;MQ0=0;MQRankSum=1.185;QD=16.35;ReadPosRankSum=1.696;SB=-9.410e+02	GT:AD:DP:GQ:PL	1/1:1,94:95:99:1586,177,0
chrXVI	622781	.	G	C	2049	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=7.1452;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=17.97;SB=-1.120e+03	GT:AD:DP:GQ:PL	1/1:0,111:114:99:2082,225,0
chrXVI	622904	.	T	A	1095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.222;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=49.19;MQ0=0;MQRankSum=1.347;QD=17.38;ReadPosRankSum=1.622;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1128,129,0
chrXVI	622919	.	A	C	647	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.844;DP=45;Dels=0.00;FS=6.154;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=42.72;MQ0=0;MQRankSum=-1.888;QD=14.38;ReadPosRankSum=2.844;SB=-5.110e+02	GT:AD:DP:GQ:PL	1/1:3,42:45:75:680,75,0
chrXVI	622931	.	C	T	476	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.53;MQ0=0;QD=14.87;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:57:509,57,0
chrXVI	622932	.	T	C	471	PASS	AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.69;MQ0=0;QD=14.72;SB=-4.050e+02	GT:AD:DP:GQ:PL	1/1:0,32:32:57:504,57,0
chrXVI	623041	.	T	G	1155	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=18.33;SB=-3.500e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1188,135,0
chrXVI	623043	.	T	C	1062	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=16.86;SB=-3.570e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1095,123,0
chrXVI	623045	.	C	T	1112	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.56;MQ0=0;QD=17.65;SB=-3.270e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1145,126,0
chrXVI	623051	.	A	C	1157	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=17.80;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1190,138,0
chrXVI	623220	.	G	A	865	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.7768;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=13.11;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:898,99,0
chrXVI	623258	.	G	A	772	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=20.32;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:805,87,0
chrXVI	623271	.	T	A	558	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.56;MQ0=0;MQRankSum=-0.612;QD=16.41;ReadPosRankSum=1.631;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:1,33:34:66:591,66,0
chrXVI	623671	.	A	C	1004	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.609;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.299;QD=17.61;ReadPosRankSum=1.670;SB=-4.480e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1037,117,0
chrXVI	623705	.	C	T	1766	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=20.78;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1799,189,0
chrXVI	624175	.	T	C	1858	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.12;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1891,207,0
chrXVI	624238	.	G	C	3296.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=9.5599;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.42;SB=-1.712e+03	GT:AD:DP:GQ:PL	1/1:0,146:147:99:3296,357,0
chrXVI	624388	.	A	T	1374	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=3.136;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.039;QD=19.63;ReadPosRankSum=1.633;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1407,147,0
chrXVI	624466	.	T	A	1808	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.352;DP=101;Dels=0.00;FS=10.948;HaplotypeScore=5.5715;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;MQRankSum=-2.328;QD=17.90;ReadPosRankSum=2.401;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:2,99:101:99:1841,201,0
chrXVI	624496	.	G	A	2335	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.42;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2368,252,0
chrXVI	624739	.	G	A	1970	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=25.92;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2003,213,0
chrXVI	624882	.	C	G	1166	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=19.11;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,58:61:99:1199,132,0
chrXVI	625038	.	G	A	1051	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=19.11;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1084,117,0
chrXVI	625108	.	C	A	1725	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.54;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1758,192,0
chrXVI	625590	.	A	G	3413.01	PASS	AC=2;AF=1.00;AN=2;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=4.6085;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;QD=20.94;SB=-1.534e+03	GT:AD:DP:GQ:PL	1/1:0,162:163:99:3413,369,0
chrXVI	625606	.	A	T	3557.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=157;Dels=0.00;FS=4.325;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;MQRankSum=1.114;QD=22.66;ReadPosRankSum=1.710;SB=-1.530e+03	GT:AD:DP:GQ:PL	1/1:1,156:157:99:3557,369,0
chrXVI	626374	.	G	A	1972	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.8216;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=24.35;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2005,210,0
chrXVI	626641	.	G	A	1564	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=13.6549;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=18.19;SB=-9.510e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1597,171,0
chrXVI	626923	.	G	A	1563	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7005;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=22.33;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1596,174,0
chrXVI	627121	.	C	A	1573	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9338;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=19.66;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1606,180,0
chrXVI	627237	.	A	T	1577	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=7.2796;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;MQRankSum=0.375;QD=21.31;ReadPosRankSum=1.592;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1610,183,0
chrXVI	627340	.	T	A	1273	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=21.58;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1306,141,0
chrXVI	627372	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;MQRankSum=-1.121;QD=19.91;ReadPosRankSum=1.681;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1387,150,0
chrXVI	627414	.	A	T	1204	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=40.15;MQ0=0;QD=15.44;SB=-9.050e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1237,132,0
chrXVI	627421	.	G	A	1068	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=38.09;MQ0=0;QD=14.05;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1101,117,0
chrXVI	627426	.	G	A	846	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.13;MQ0=0;QD=11.13;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:96:879,96,0
chrXVI	627437	.	A	T	727	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=35.36;MQ0=0;QD=11.02;SB=-7.500e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:81:760,81,0
chrXVI	627439	.	C	T	706	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=36.33;MQ0=0;QD=10.38;SB=-7.700e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:81:739,81,0
chrXVI	627508	.	T	G	988	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.20;MQ0=0;QD=15.44;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1021,114,0
chrXVI	627514	.	C	G	946	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=15.51;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:979,111,0
chrXVI	627534	.	G	A	733	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=13.83;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:84:766,84,0
chrXVI	627537	.	C	G	731	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.25;MQ0=0;QD=14.06;SB=-6.130e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:84:764,84,0
chrXVI	627833	.	G	A	1330	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=54.36;MQ0=0;QD=20.46;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1363,153,0
chrXVI	627865	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=22.36;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1643,183,0
chrXVI	628182	.	G	A	1578	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=8.5519;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.76;SB=-8.960e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1611,174,0
chrXVI	628338	.	A	C	1775	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.918;DP=113;Dels=0.00;FS=9.578;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;MQRankSum=0.716;QD=15.71;ReadPosRankSum=2.936;SB=-5.370e+02	GT:AD:DP:GQ:PL	1/1:3,108:113:99:1808,201,0
chrXVI	628342	.	C	A	1827	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.02;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.22;MQ0=0;QD=15.89;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:0,113:113:99:1860,198,0
chrXVI	628959	.	G	A	1998	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=19.21;SB=-1.142e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2031,222,0
chrXVI	629034	.	T	C	1514	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;MQRankSum=-0.666;QD=16.64;ReadPosRankSum=0.209;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1547,148,0
chrXVI	629043	.	C	G	1580	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.8766;MLEAC=2;MLEAF=1.00;MQ=56.83;MQ0=0;QD=19.27;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,80:82:99:1613,177,0
chrXVI	629611	.	C	T	1127	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=4.3745;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.49;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1160,126,0
chrXVI	629640	.	G	C	1106	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=21.69;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1139,123,0
chrXVI	629722	.	A	C	970	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=19.02;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,49:51:99:1003,111,0
chrXVI	630078	.	T	C	1149	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=54;Dels=0.00;FS=3.174;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.321;QD=21.28;ReadPosRankSum=1.668;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1182,132,0
chrXVI	631047	.	G	A	1464	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.5942;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=20.62;SB=-3.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1497,159,0
chrXVI	631328	.	A	C	213.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.847;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.9392;MLEAC=2;MLEAF=1.00;MQ=34.99;MQ0=0;MQRankSum=1.869;QD=4.26;ReadPosRankSum=-2.582;SB=-1.001e+02	GT:AD:DP:GQ:PL	1/1:36,14:50:5:244,5,0
chrXVI	631883	.	A	T	3909.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.389;DP=161;Dels=0.00;FS=7.270;HaplotypeScore=10.4362;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;MQRankSum=1.259;QD=24.28;ReadPosRankSum=2.419;SB=-1.782e+03	GT:AD:DP:GQ:PL	1/1:2,159:161:99:3909,423,0
chrXVI	631944	.	G	A	2142	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.91;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2175,228,0
chrXVI	632897	.	T	C	1510	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=21.57;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1543,171,0
chrXVI	633006	.	G	A	1539	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=21.37;SB=-8.520e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1572,177,0
chrXVI	633458	.	T	A	1481	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.98;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1514,162,0
chrXVI	633533	.	C	T	1574	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.49;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1607,174,0
chrXVI	635040	.	C	A	2103	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.14;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,94:95:99:2136,237,0
chrXVI	635109	.	T	C	1722	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.69;MQ0=0;QD=20.75;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1755,195,0
chrXVI	635115	.	T	C	1813	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.22;MQ0=0;QD=20.60;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1846,204,0
chrXVI	635531	.	C	T	1591	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=21.21;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1624,171,0
chrXVI	635876	.	T	C	1419	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;MQRankSum=0.204;QD=20.87;ReadPosRankSum=1.681;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1452,159,0
chrXVI	635980	.	G	A	1063	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=3.254;HaplotypeScore=3.4609;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-0.409;QD=19.33;ReadPosRankSum=0.850;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1096,117,0
chrXVI	636087	.	C	G	1561	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=18.36;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1594,177,0
chrXVI	636800	.	T	A	1114	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=20.25;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1147,123,0
chrXVI	636804	.	G	A	1096	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=19.23;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1129,120,0
chrXVI	637454	.	A	G	2003	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=90;Dels=0.00;FS=6.118;HaplotypeScore=6.7020;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=-1.270;QD=22.26;ReadPosRankSum=1.617;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2036,225,0
chrXVI	637526	.	T	C	1811	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=93;Dels=0.00;FS=5.788;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;MQRankSum=1.085;QD=19.47;ReadPosRankSum=1.694;SB=-6.080e+02	GT:AD:DP:GQ:PL	1/1:1,90:93:99:1844,204,0
chrXVI	638093	.	G	T	1759	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=21.19;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1792,189,0
chrXVI	638355	.	A	G	1174	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=21.74;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1207,132,0
chrXVI	638483	.	G	A	1454	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=22.37;SB=-8.030e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1487,162,0
chrXVI	638684	.	C	T	1337	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.92;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1370,150,0
chrXVI	638780	.	A	G	1489	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=19.85;SB=-8.250e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1522,168,0
chrXVI	638861	.	C	T	1414	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=57.93;MQ0=0;QD=17.90;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1447,159,0
chrXVI	638918	.	A	G	1938	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=21.30;SB=-1.098e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1971,213,0
chrXVI	638923	.	T	C	1818	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=19.76;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1851,207,0
chrXVI	639081	.	T	A	1209	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.4547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=17.78;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1242,135,0
chrXVI	639173	.	A	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=10.3927;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.92;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2045,228,0
chrXVI	639347	.	C	T	792	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=18.00;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,43:44:87:825,87,0
chrXVI	639417	.	C	T	776	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=13.61;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:87:809,87,0
chrXVI	639423	.	C	G	883	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.02;FS=0.000;HaplotypeScore=6.3766;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=13.58;SB=-7.730e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:916,99,0
chrXVI	639626	.	C	T	1673	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=21.45;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1706,183,0
chrXVI	639648	.	G	A	1359	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.0865;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.62;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1392,150,0
chrXVI	639699	.	G	A	1375	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.10;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1408,150,0
chrXVI	639980	.	T	C	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=9.6713;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.453;QD=18.92;ReadPosRankSum=1.692;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:1,86:89:99:1717,189,0
chrXVI	640589	.	A	G	1151	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.1877;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=19.51;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1184,135,0
chrXVI	640976	.	C	A	1222	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.71;SB=-4.270e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1255,135,0
chrXVI	641225	.	T	C	798	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=21.00;SB=-2.650e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:93:831,93,0
chrXVI	641294	.	A	G	499	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=17.21;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,29:29:60:532,60,0
chrXVI	641459	.	C	A	1101	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.43;SB=-2.750e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1134,123,0
chrXVI	641520	.	G	A	1620	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.82;SB=-4.670e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1653,174,0
chrXVI	641549	.	G	A	1304	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.63;SB=-6.120e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1337,141,0
chrXVI	641566	.	G	C	1197	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.9168;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=16.86;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1230,135,0
chrXVI	642177	.	T	A	700	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=32;Dels=0.00;FS=5.051;HaplotypeScore=6.3239;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.408;QD=21.87;ReadPosRankSum=1.625;SB=-2.550e+02	GT:AD:DP:GQ:PL	1/1:1,31:32:78:733,78,0
chrXVI	642462	.	C	T	984	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.36;SB=-1.420e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1017,108,0
chrXVI	642789	.	C	T	1563	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=19.54;SB=-1.005e+03	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1596,174,0
chrXVI	643032	.	C	G	2375	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=20.30;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:0,115:117:99:2408,270,0
chrXVI	643062	.	C	T	2459	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.20;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:2492,264,0
chrXVI	644471	.	C	A	1145	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=20.45;SB=-6.560e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1178,126,0
chrXVI	644568	.	C	T	1363	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2233;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=16.83;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1396,156,0
chrXVI	644801	.	A	G	1393	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.09;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1426,162,0
chrXVI	645683	.	G	T	1370	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.27;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1403,147,0
chrXVI	645881	.	A	G	1314	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.52;MQ0=0;QD=19.91;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1347,153,0
chrXVI	645899	.	C	A	1213	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=54.37;MQ0=0;QD=20.22;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1246,132,0
chrXVI	645942	.	T	C	932	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;QD=19.42;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:965,108,0
chrXVI	646045	.	T	C	430	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=16.54;SB=-3.140e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:51:463,51,0
chrXVI	646196	.	C	T	190.03	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=56.61;MQ0=0;QD=9.05;SB=-2.904e+01	GT:AD:DP:GQ:PL	1/1:0,21:21:24:223,24,0
chrXVI	646408	.	T	G	253	filter	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.52;MQ0=0;QD=9.04;SB=-1.520e-02	GT:AD:DP:GQ:PL	1/1:0,27:28:30:286,30,0
chrXVI	646670	.	T	C	993	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.9200;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=23.64;SB=-1.640e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:99:1026,114,0
chrXVI	646736	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.38;MQ0=0;QD=24.35;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1372,147,0
chrXVI	647322	.	T	C	983	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=20.48;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,45:48:99:1016,111,0
chrXVI	647623	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.251;DP=62;Dels=0.00;FS=7.314;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=2.092;QD=20.42;ReadPosRankSum=2.291;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1299,141,0
chrXVI	647721	.	T	C	1461	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.49;SB=-8.500e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1494,165,0
chrXVI	648123	.	A	G	2645	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=116;Dels=0.00;FS=5.330;HaplotypeScore=8.8666;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-1.284;QD=22.80;ReadPosRankSum=1.672;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:1,115:116:99:2678,300,0
chrXVI	648390	.	A	T	2134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.351;DP=102;Dels=0.00;FS=2.913;HaplotypeScore=8.6642;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=0.603;QD=20.92;ReadPosRankSum=2.376;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:2,100:102:99:2167,237,0
chrXVI	649336	.	T	C	1803	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.623;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-0.820;QD=18.78;ReadPosRankSum=1.696;SB=-1.176e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:1836,204,0
chrXVI	649375	.	G	T	2339	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=22.93;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2372,258,0
chrXVI	649402	.	A	G	2231	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.361;DP=111;Dels=0.00;FS=9.159;HaplotypeScore=3.4839;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;MQRankSum=0.366;QD=20.10;ReadPosRankSum=2.361;SB=-9.890e+02	GT:AD:DP:GQ:PL	1/1:2,109:111:99:2264,246,0
chrXVI	649438	.	C	T	1945	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=18.35;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,105:106:99:1978,219,0
chrXVI	649447	.	G	A	1826	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.60;SB=-1.309e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1859,207,0
chrXVI	649499	.	T	C	1678	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.3698;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=18.85;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1711,186,0
chrXVI	649552	.	T	C	2015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.622;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=5.0355;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.663;QD=20.99;ReadPosRankSum=1.695;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2048,234,0
chrXVI	649597	.	G	A	2018	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=55.41;MQ0=0;QD=20.38;SB=-1.190e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2051,216,0
chrXVI	649613	.	A	C	1755	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=19.08;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1788,195,0
chrXVI	649723	.	C	T	2398	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=21.22;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,110:113:99:2431,255,0
chrXVI	649759	.	T	C	1904	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=20.92;SB=-4.780e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1937,216,0
chrXVI	649819	.	T	C	1089	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=20.55;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1122,126,0
chrXVI	650183	.	T	A	158.06	PASS	AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=15.81;SB=-1.109e+02	GT:AD:DP:GQ:PL	1/1:0,10:10:21:191,21,0
chrXVI	650861	.	C	T	1927	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.39;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1960,204,0
chrXVI	651371	.	T	A	2448	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.220;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=12.0749;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=0.949;QD=20.57;ReadPosRankSum=1.115;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:2,117:119:99:2481,276,0
chrXVI	651827	.	C	T	2654	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6480;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.49;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:0,116:118:99:2687,285,0
chrXVI	651959	.	A	T	1064	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=3.382;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=-1.732;QD=17.44;ReadPosRankSum=1.675;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1097,117,0
chrXVI	651960	.	A	G	1009	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.60;MQ0=0;QD=16.82;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1042,117,0
chrXVI	652186	.	T	C	3289.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=146;Dels=0.00;FS=0.000;HaplotypeScore=8.0763;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.651;QD=22.53;ReadPosRankSum=1.708;SB=-1.416e+03	GT:AD:DP:GQ:PL	1/1:1,140:146:99:3289,360,0
chrXVI	652466	.	A	G	1629	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.63;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1662,186,0
chrXVI	652661	.	C	T	2598	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=21.30;SB=-1.315e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2631,282,0
chrXVI	652898	.	A	G	1097	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=17.14;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1130,126,0
chrXVI	652985	.	T	C	1431	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.2691;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.60;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1464,162,0
chrXVI	653114	.	A	G	1277	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;MQRankSum=1.376;QD=17.99;ReadPosRankSum=1.579;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1310,144,0
chrXVI	653303	.	A	G	1779	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.41;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1812,198,0
chrXVI	653739	.	T	C	1721	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=21.78;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1754,195,0
chrXVI	653760	.	G	C	1664	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;QD=21.61;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1697,186,0
chrXVI	653803	.	C	T	831	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.85;MQ0=0;QD=16.62;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:93:864,93,0
chrXVI	653824	.	C	T	475	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.79;MQ0=0;QD=12.18;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:54:508,54,0
chrXVI	653835	.	G	A	436	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.69;MQ0=0;QD=10.90;SB=-3.950e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:51:469,51,0
chrXVI	653867	.	T	C	667	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=5.051;HaplotypeScore=33.4445;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;MQRankSum=-0.866;QD=13.90;ReadPosRankSum=1.588;SB=-3.640e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:75:700,75,0
chrXVI	653882	.	A	G	992	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=17.10;SB=-4.810e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1025,111,0
chrXVI	654180	.	A	G	1042	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=5.351;HaplotypeScore=4.9268;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=-0.217;QD=21.71;ReadPosRankSum=1.660;SB=-3.580e+02	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1075,120,0
chrXVI	654320	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.04;MQ0=0;QD=20.56;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1657,180,0
chrXVI	654333	.	G	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=19.84;SB=-7.380e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1660,177,0
chrXVI	654370	.	C	T	1461	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8903;MLEAC=2;MLEAF=1.00;MQ=50.78;MQ0=0;QD=19.74;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1494,165,0
chrXVI	654445	.	T	C	1326	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.68;MQ0=0;QD=21.05;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1359,153,0
chrXVI	654457	.	A	G	1210	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=17.54;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,66:69:99:1243,135,0
chrXVI	654906	.	A	T	247	PASS	AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=19.00;SB=-1.729e+02	GT:AD:DP:GQ:PL	1/1:0,13:13:30:280,30,0
chrXVI	654952	.	C	T	319	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.27;SB=-1.260e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:39:352,39,0
chrXVI	655349	.	C	T	1793	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=4.0879;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=25.25;SB=-1.010e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1826,195,0
chrXVI	655575	.	A	C	1698	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=4.5652;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=18.46;SB=-7.280e+02	GT:AD:DP:GQ:PL	1/1:0,91:92:99:1731,192,0
chrXVI	656010	.	A	G	1568	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=3.1291;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.10;SB=-9.390e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1601,177,0
chrXVI	656256	.	T	C	1075	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=5.6367;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=15.14;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1108,123,0
chrXVI	656419	.	T	C	1323	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.75;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1356,150,0
chrXVI	656562	.	G	A	1139	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.16;MQ0=0;QD=17.00;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1172,129,0
chrXVI	656563	.	G	A	1251	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.40;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1284,138,0
chrXVI	656677	.	C	T	1491	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.61;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1524,162,0
chrXVI	656861	.	G	A	1039	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=19.60;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1072,117,0
chrXVI	657231	.	A	G	1521	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=20.55;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1554,171,0
chrXVI	657242	.	T	A	1501	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=21.14;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1534,162,0
chrXVI	657450	.	G	T	2539	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=21.52;SB=-1.477e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2572,276,0
chrXVI	657485	.	A	G	1699	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;DP=99;Dels=0.00;FS=3.018;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=49.23;MQ0=0;MQRankSum=0.311;QD=17.16;ReadPosRankSum=2.325;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:2,97:99:99:1732,186,0
chrXVI	657494	.	G	A	1097	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=46.33;MQ0=0;QD=13.38;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1130,120,0
chrXVI	657502	.	A	C	857	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.5052;MLEAC=2;MLEAF=1.00;MQ=42.71;MQ0=0;MQRankSum=-1.624;QD=13.39;ReadPosRankSum=1.678;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:890,99,0
chrXVI	657509	.	T	G	675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.604;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;MQRankSum=-0.321;QD=12.50;ReadPosRankSum=1.668;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:55:708,55,0
chrXVI	658293	.	T	C	1689	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=21.11;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1722,189,0
chrXVI	658323	.	C	T	1648	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=21.40;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1681,183,0
chrXVI	658350	.	A	G	1420	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=4.102;HaplotypeScore=5.5530;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;MQRankSum=-0.433;QD=19.72;ReadPosRankSum=1.684;SB=-7.250e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1453,162,0
chrXVI	658638	.	T	G	1788	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=12.0098;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.29;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1821,207,0
chrXVI	659304	.	T	C	1501	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=18.08;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1534,171,0
chrXVI	659394	.	C	T	1761	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.35;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1794,204,0
chrXVI	659460	.	G	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.9462;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=17.66;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1340,141,0
chrXVI	659469	.	C	G	1080	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=68;Dels=0.00;FS=3.490;HaplotypeScore=2.5802;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;MQRankSum=1.629;QD=15.88;ReadPosRankSum=0.543;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:1,66:68:99:1113,123,0
chrXVI	659822	.	C	A	1158	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=19.63;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1191,126,0
chrXVI	660020	.	G	A	1027	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=19.02;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1060,111,0
chrXVI	660028	.	G	A	1087	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=18.74;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1120,117,0
chrXVI	660066	.	A	G	1266	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.97;MQ0=0;QD=18.09;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1299,147,0
chrXVI	660101	.	A	T	1551	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.3529;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=19.88;SB=-9.350e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1584,168,0
chrXVI	660556	.	C	G	1557	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.24;SB=-5.210e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1590,171,0
chrXVI	660697	.	C	T	1110	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=17.62;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1143,123,0
chrXVI	660987	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=24.57;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1237,135,0
chrXVI	661094	.	C	T	1663	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=56.32;MQ0=0;QD=20.79;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1696,183,0
chrXVI	661118	.	G	T	1530	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.08;MQ0=0;QD=20.40;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1563,168,0
chrXVI	661245	.	A	T	922	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:955,102,0
chrXVI	662450	.	C	T	1686	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=4.0227;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=18.13;SB=-1.063e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1719,183,0
chrXVI	663036	.	A	G	1794	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=6.6902;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.30;SB=-4.250e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1827,204,0
chrXVI	663549	.	C	T	2629	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=24.34;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,107:108:99:2662,282,0
chrXVI	664738	.	T	C	1996	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=24.95;SB=-9.760e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2029,222,0
chrXVI	665441	.	A	G	1180	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.9559;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.527;QD=17.10;ReadPosRankSum=1.682;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1213,132,0
chrXVI	665472	.	T	C	1041	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=15.77;SB=-7.901e+01	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1074,123,0
chrXVI	665628	.	T	C	1486	filter	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.19;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1519,165,0
chrXVI	665970	.	A	G	1476	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.71;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1509,168,0
chrXVI	666286	.	T	C	1200	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.8593;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=18.18;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1233,138,0
chrXVI	666759	.	A	G	1568	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=20.36;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1601,180,0
chrXVI	666924	.	T	C	1410	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.43;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1443,162,0
chrXVI	669067	.	C	T	1609	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.32;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1642,177,0
chrXVI	670444	.	A	T	1378	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=21.53;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1411,153,0
chrXVI	673257	.	G	A	2197	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.88;SB=-1.253e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2230,234,0
chrXVI	675869	.	A	C	925	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=20.56;SB=-4.010e+02	GT:AD:DP:GQ:PL	1/1:0,44:45:99:958,105,0
chrXVI	676907	.	C	T	1445	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.94;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1478,156,0
chrXVI	677078	.	G	A	761	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.6540;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=10.57;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:84:794,84,0
chrXVI	677826	.	T	C	1411	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=22.05;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1444,159,0
chrXVI	679094	.	T	C	1261	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=21.37;SB=-2.340e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1294,141,0
chrXVI	679243	.	T	C	1061	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.348;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.14;MQ0=0;MQRankSum=-0.026;QD=22.10;ReadPosRankSum=2.348;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:2,46:48:99:1094,120,0
chrXVI	679562	.	C	T	3090	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.41;SB=-9.870e+02	GT:AD:DP:GQ:PL	1/1:0,131:132:99:3123,336,0
chrXVI	679593	.	T	C	2131	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=7.3041;MLEAC=2;MLEAF=1.00;MQ=53.89;MQ0=0;MQRankSum=0.049;QD=19.92;ReadPosRankSum=1.699;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:1,104:107:99:2164,246,0
chrXVI	679603	.	A	G	1789	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.927;DP=98;Dels=0.00;FS=15.464;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.76;MQ0=0;MQRankSum=-1.158;QD=18.26;ReadPosRankSum=2.927;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:3,93:98:99:1822,204,0
chrXVI	679610	.	C	T	1856	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=19.96;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:0,93:93:99:1889,204,0
chrXVI	679642	.	A	G	1431	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.89;SB=-8.210e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1464,165,0
chrXVI	679897	.	G	A	1999	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3607;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.98;SB=-9.360e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2032,216,0
chrXVI	680007	.	G	A	119.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.714;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=62.1818;MLEAC=1;MLEAF=0.500;MQ=57.71;MQ0=0;MQRankSum=2.281;QD=1.47;ReadPosRankSum=1.524;SB=-8.660e+02	GT:AD:DP:GQ:PL	0/1:6,75:81:23:149,0,23
chrXVI	680151	.	A	G	2733	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=23.77;SB=-1.012e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2766,297,0
chrXVI	680207	.	T	C	1570	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.3752;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.372;QD=20.39;ReadPosRankSum=1.642;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1603,183,0
chrXVI	680440	.	A	T	1489	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=18.61;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1522,162,0
chrXVI	680556	.	A	G	1755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=96;Dels=0.00;FS=3.040;HaplotypeScore=10.6669;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.382;QD=18.28;ReadPosRankSum=2.395;SB=-1.045e+03	GT:AD:DP:GQ:PL	1/1:2,89:96:99:1788,201,0
chrXVI	681090	.	A	G	1469	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;DP=70;Dels=0.03;FS=21.553;HaplotypeScore=9.3094;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=-0.168;QD=20.99;ReadPosRankSum=2.375;SB=-8.601e+01	GT:AD:DP:GQ:PL	1/1:2,64:68:99:1502,162,0
chrXVI	681242	.	A	C	1881	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=22.94;SB=-9.580e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1914,210,0
chrXVI	681479	.	T	C	1374	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=18.32;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1407,153,0
chrXVI	681679	.	A	G	1405	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=20.07;SB=-8.570e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1438,159,0
chrXVI	681719	.	A	G	1676	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=95;Dels=0.00;FS=2.883;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;MQRankSum=-0.246;QD=17.64;ReadPosRankSum=2.346;SB=-9.730e+02	GT:AD:DP:GQ:PL	1/1:2,93:95:99:1709,195,0
chrXVI	681810	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=20.96;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1437,165,0
chrXVI	682109	.	C	T	947	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.03;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=15.03;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:980,105,0
chrXVI	682112	.	G	A	919	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.03;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=14.36;SB=-7.220e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:952,99,0
chrXVI	683503	.	C	T	2475	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=22.50;SB=-1.382e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2508,270,0
chrXVI	683865	.	C	T	1781	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=15.2280;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=17.63;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1814,192,0
chrXVI	683890	.	T	C	1545	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=83;Dels=0.00;FS=4.087;HaplotypeScore=5.2727;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;MQRankSum=-0.887;QD=18.61;ReadPosRankSum=1.690;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,81:83:99:1578,174,0
chrXVI	684164	.	A	G	1525	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=72;Dels=0.00;FS=3.802;HaplotypeScore=5.6839;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.588;QD=21.18;ReadPosRankSum=1.684;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1558,171,0
chrXVI	684477	.	A	G	2182	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=94;Dels=0.00;FS=4.027;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.857;QD=23.21;ReadPosRankSum=1.656;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:1,90:94:99:2215,246,0
chrXVI	684733	.	A	C	1054	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=0.601;QD=21.51;ReadPosRankSum=1.591;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1087,123,0
chrXVI	684937	.	A	G	1710	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.276;DP=86;Dels=0.00;FS=2.888;HaplotypeScore=7.9303;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.043;QD=19.88;ReadPosRankSum=2.392;SB=-8.920e+02	GT:AD:DP:GQ:PL	1/1:2,83:86:99:1743,195,0
chrXVI	685030	.	A	T	1298	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.82;MQ0=0;QD=22.77;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1331,141,0
chrXVI	685072	.	T	C	863	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;MQRankSum=-1.193;QD=19.18;ReadPosRankSum=1.655;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:96:896,96,0
chrXVI	685099	.	C	T	827	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=17.60;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:90:860,90,0
chrXVI	685129	.	C	T	1197	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=19.62;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1230,135,0
chrXVI	685431	.	G	T	788	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.96;MQ0=0;QD=17.91;SB=-5.620e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:87:821,87,0
chrXVI	685433	.	G	T	787	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.80;MQ0=0;QD=17.11;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:820,87,0
chrXVI	685589	.	T	A	1025	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;MQRankSum=0.033;QD=19.34;ReadPosRankSum=1.667;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1058,111,0
chrXVI	685590	.	T	A	1019	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=19.23;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1052,111,0
chrXVI	685682	.	C	T	1014	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;QD=22.04;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1047,111,0
chrXVI	685867	.	T	C	1856	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=19.33;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1889,210,0
chrXVI	685870	.	A	G	1682	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;DP=89;Dels=0.00;FS=8.603;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.07;MQ0=0;MQRankSum=0.798;QD=18.90;ReadPosRankSum=2.366;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:2,86:89:99:1715,186,0
chrXVI	685954	.	G	A	1519	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.9244;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=21.39;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1552,165,0
chrXVI	686038	.	G	A	1540	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=20.53;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1573,174,0
chrXVI	686122	.	G	A	2178	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=4.0386;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.00;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2211,234,0
chrXVI	686200	.	C	T	2650	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=3.3029;MLEAC=2;MLEAF=1.00;MQ=51.60;MQ0=0;QD=19.92;SB=-1.539e+03	GT:AD:DP:GQ:PL	1/1:0,132:133:99:2683,291,0
chrXVI	686218	.	C	T	2740	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.4011;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=22.10;SB=-1.731e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2773,291,0
chrXVI	686508	.	G	A	1967	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.4637;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=23.42;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2000,210,0
chrXVI	686521	.	G	A	1783	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=20.98;SB=-7.890e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1816,195,0
chrXVI	688677	.	G	A	1399	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=5.9378;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=22.93;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:99:1432,150,0
chrXVI	688954	.	A	G	1887	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.688;QD=23.89;ReadPosRankSum=1.644;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1920,213,0
chrXVI	689032	.	C	A	2008	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=22.82;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,86:88:99:2041,216,0
chrXVI	689525	.	T	A	1954	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=22.20;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1987,219,0
chrXVI	689827	.	T	C	2010	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DP=98;Dels=0.00;FS=4.230;HaplotypeScore=6.2223;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=1.697;QD=20.51;ReadPosRankSum=1.449;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2043,219,0
chrXVI	689943	.	T	A	2009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.228;DP=102;Dels=0.00;FS=9.290;HaplotypeScore=12.9841;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;MQRankSum=-0.959;QD=19.70;ReadPosRankSum=3.193;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:4,98:102:99:2042,225,0
chrXVI	689998	.	A	G	2010	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=21.85;SB=-1.042e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2043,222,0
chrXVI	690445	.	A	G	1356	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=61;Dels=0.00;FS=2.668;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.506;QD=22.23;ReadPosRankSum=2.329;SB=-5.550e+02	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1389,153,0
chrXVI	690986	.	G	C	1147	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=8.1152;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.92;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1180,132,0
chrXVI	691459	.	A	C	1983	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.146;DP=107;Dels=0.00;FS=3.051;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=-0.599;QD=18.53;ReadPosRankSum=-0.340;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2016,200,0
chrXVI	691465	.	T	C	1920	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=106;Dels=0.00;FS=3.721;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.07;MQ0=0;MQRankSum=-1.242;QD=18.11;ReadPosRankSum=1.699;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:1,105:106:99:1953,216,0
chrXVI	691468	.	G	A	1977	SnpCluster	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=50.52;MQ0=0;QD=18.31;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2010,216,0
chrXVI	691472	.	G	C	2043	SnpCluster	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=3.3415;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=18.24;SB=-1.236e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2076,228,0
chrXVI	691540	.	T	C	2826	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=56.37;MQ0=0;QD=21.57;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2859,306,0
chrXVI	691669	.	A	G	1379	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=22.98;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1412,159,0
chrXVI	692056	.	A	G	1506	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.50;MQ0=0;QD=21.83;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1539,168,0
chrXVI	692104	.	T	C	1864	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.658;DP=94;Dels=0.00;FS=6.068;HaplotypeScore=5.5304;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;MQRankSum=-0.652;QD=19.83;ReadPosRankSum=1.695;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1897,210,0
chrXVI	692119	.	A	G	2134	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;DP=107;Dels=0.01;FS=0.000;HaplotypeScore=1.7987;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=0.915;QD=19.94;ReadPosRankSum=1.699;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:1,105:106:99:2167,243,0
chrXVI	692167	.	G	A	1898	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=9.5076;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=20.41;SB=-9.310e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1931,204,0
chrXVI	692440	.	T	C	2257	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=24.80;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2290,249,0
chrXVI	692547	.	A	G	1756	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=78;Dels=0.00;FS=3.606;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=1.377;QD=22.51;ReadPosRankSum=1.643;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1789,198,0
chrXVI	692701	.	C	T	3594.01	PASS	AC=2;AF=1.00;AN=2;DP=171;Dels=0.00;FS=0.000;HaplotypeScore=5.0645;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.02;SB=-1.874e+03	GT:AD:DP:GQ:PL	1/1:0,171:171:99:3594,384,0
chrXVI	692709	.	A	T	3362.01	PASS	AC=2;AF=1.00;AN=2;DP=175;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.64;MQ0=0;QD=19.21;SB=-1.521e+03	GT:AD:DP:GQ:PL	1/1:0,175:175:99:3362,363,0
chrXVI	693567	.	T	G	1373	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=20.19;SB=-7.720e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1406,156,0
chrXVI	693600	.	C	T	1278	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=18.79;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1311,138,0
chrXVI	693603	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.86;MQ0=0;QD=17.73;SB=-8.850e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1292,144,0
chrXVI	694413	.	C	T	1768	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=20.80;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1801,192,0
chrXVI	694434	.	C	A	1322	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.6197;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;MQRankSum=0.957;QD=17.17;ReadPosRankSum=1.048;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1355,144,0
chrXVI	694965	.	G	T	1475	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=18.44;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1508,165,0
chrXVI	694969	.	G	T	1483	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=17.87;SB=-5.660e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1516,168,0
chrXVI	695001	.	A	G	1544	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.86;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1577,174,0
chrXVI	695040	.	G	A	1294	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.31;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1327,141,0
chrXVI	695201	.	A	C	878	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.97;MQ0=0;QD=19.95;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:911,102,0
chrXVI	695213	.	A	G	873	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=20.79;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:99:906,99,0
chrXVI	695215	.	G	T	878	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=20.90;SB=-5.690e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:911,96,0
chrXVI	695230	.	C	A	845	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=18.78;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:93:878,93,0
chrXVI	695278	.	G	A	1121	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=19.00;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1154,126,0
chrXVI	695419	.	C	T	1355	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=20.53;SB=-5.270e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1388,147,0
chrXVI	695522	.	G	A	1157	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.42;MQ0=0;QD=20.30;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1190,123,0
chrXVI	695527	.	T	G	1111	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.81;MQ0=0;QD=19.84;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1144,126,0
chrXVI	695543	.	G	C	977	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=20.79;SB=-5.510e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1010,111,0
chrXVI	695562	.	G	C	847	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=17.65;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:0,46:48:96:880,96,0
chrXVI	695653	.	C	G	1215	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=14.82;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1248,135,0
chrXVI	695892	.	T	C	1531	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=19.63;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1564,174,0
chrXVI	696046	.	T	C	1897	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=52.23;MQ0=0;QD=21.56;SB=-9.260e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1930,213,0
chrXVI	696088	.	G	A	1599	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=20.77;SB=-8.340e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1632,171,0
chrXVI	696232	.	A	G	1206	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.519;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.5417;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.560;QD=18.55;ReadPosRankSum=1.679;SB=-6.180e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1239,135,0
chrXVI	696313	.	G	A	1093	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=14.57;SB=-7.200e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1126,120,0
chrXVI	697060	.	C	T	1704	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=50.48;MQ0=0;QD=20.05;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1737,183,0
chrXVI	697067	.	T	C	1551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.642;DP=77;Dels=0.00;FS=3.680;HaplotypeScore=3.5021;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;MQRankSum=-1.282;QD=20.14;ReadPosRankSum=1.687;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:1,76:77:99:1584,174,0
chrXVI	697095	.	G	C	1355	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=19.08;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,69:71:99:1388,153,0
chrXVI	697122	.	G	A	1109	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.12;MQ0=0;QD=16.80;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1142,123,0
chrXVI	697144	.	C	G	885	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=16.09;SB=-3.190e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:918,99,0
chrXVI	697315	.	G	A	859	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=18.28;SB=-5.520e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:892,99,0
chrXVI	697502	.	T	C	1610	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.229;DP=78;Dels=0.00;FS=3.041;HaplotypeScore=9.6074;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=-0.269;QD=20.64;ReadPosRankSum=2.387;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1643,180,0
chrXVI	697775	.	C	T	1594	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.25;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1627,174,0
chrXVI	697918	.	A	G	1996	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=22.94;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2029,228,0
chrXVI	698544	.	T	G	65.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.702;DP=43;Dels=0.02;FS=0.000;HaplotypeScore=14.3721;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;MQRankSum=-1.452;QD=1.52;ReadPosRankSum=1.077;SB=-8.052e+01	GT:AD:DP:GQ:PL	1/1:1,36:42:12:98,12,0
chrXVI	698558	.	C	G	97.26	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=38.77;MQ0=0;QD=2.43;SB=-8.627e+01	GT:AD:DP:GQ:PL	1/1:0,38:40:15:130,15,0
chrXVI	698565	.	A	G	175.03	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=37.87;MQ0=0;QD=4.38;SB=-8.204e+01	GT:AD:DP:GQ:PL	1/1:0,40:40:24:208,24,0
chrXVI	698605	.	T	C	600	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=45.49;MQ0=0;MQRankSum=-0.294;QD=11.32;ReadPosRankSum=1.667;SB=-1.070e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:72:633,72,0
chrXVI	698632	.	T	C	730	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=4.1977;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=15.53;SB=-1.060e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:84:763,84,0
chrXVI	698725	.	A	G	908	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=20.64;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,44:44:99:941,102,0
chrXVI	698946	.	T	C	1424	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.5626;MLEAC=2;MLEAF=1.00;MQ=50.53;MQ0=0;QD=18.74;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1457,165,0
chrXVI	698959	.	T	C	1473	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=19.13;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1506,162,0
chrXVI	698984	.	C	T	1105	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=16.49;SB=-8.750e+02	GT:AD:DP:GQ:PL	1/1:0,66:67:99:1138,123,0
chrXVI	699102	.	G	A	1105	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=20.85;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1138,123,0
chrXVI	699146	.	T	G	1078	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=18.59;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1111,123,0
chrXVI	699198	.	T	C	1354	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.49;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1387,153,0
chrXVI	699223	.	T	C	1341	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.63;SB=-5.580e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1374,150,0
chrXVI	699945	.	T	C	771	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=15.73;SB=-5.130e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:90:804,90,0
chrXVI	699985	.	C	T	1342	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=19.74;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1375,156,0
chrXVI	700042	.	A	G	2009	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.596;QD=19.32;ReadPosRankSum=1.630;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:1,101:104:99:2042,228,0
chrXVI	700285	.	T	C	812	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.67;MQ0=0;QD=16.57;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:93:845,93,0
chrXVI	700309	.	T	G	699	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.66;MQ0=0;QD=18.89;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:81:732,81,0
chrXVI	700480	.	C	T	2402	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=8.4683;MLEAC=2;MLEAF=1.00;MQ=42.99;MQ0=0;QD=22.88;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2435,261,0
chrXVI	700509	.	A	G	2411	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=24.11;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2444,276,0
chrXVI	700546	.	C	T	2346	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=0;QD=24.69;SB=-9.840e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2379,252,0
chrXVI	700554	.	A	C	1919	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=23.40;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1952,213,0
chrXVI	702366	.	A	G	2269	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=22.92;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2302,252,0
chrXVI	702403	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=23.01;SB=-9.290e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2150,228,0
chrXVI	702425	.	C	T	1784	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.2992;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=20.74;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1817,204,0
chrXVI	702489	.	G	A	1357	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=22.25;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1390,147,0
chrXVI	702492	.	G	A	1326	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=21.39;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1359,147,0
chrXVI	702639	.	A	C	976	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.14;SB=-6.330e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1009,114,0
chrXVI	702662	.	G	C	1078	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=19.96;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:1111,123,0
chrXVI	703359	.	T	C	803	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=20.07;SB=-4.400e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:90:836,90,0
chrXVI	703434	.	T	C	1170	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=20.17;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1203,132,0
chrXVI	703505	.	T	A	1400	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=19.18;SB=-8.240e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1433,150,0
chrXVI	703536	.	G	A	1568	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7113;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=19.60;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1601,177,0
chrXVI	703890	.	C	T	1338	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=6.6519;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=19.11;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1371,147,0
chrXVI	704140	.	C	T	1784	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=21.24;SB=-1.001e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1817,192,0
chrXVI	704390	.	C	T	2030	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=53.04;MQ0=0;QD=16.78;SB=-1.372e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2063,219,0
chrXVI	704396	.	G	C	1833	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=16.66;SB=-1.278e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:1866,204,0
chrXVI	704455	.	A	G	1048	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=6.5827;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=13.27;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:0,77:79:99:1081,117,0
chrXVI	704996	.	C	G	1798	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=21.40;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1831,201,0
chrXVI	705306	.	T	C	1381	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=4.578;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.050;QD=20.61;ReadPosRankSum=1.680;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1414,156,0
chrXVI	706407	.	G	A	2363	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=21.68;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2396,255,0
chrXVI	707058	.	G	A	1008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=5.371;HaplotypeScore=5.7160;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.676;QD=16.26;ReadPosRankSum=0.615;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1041,111,0
chrXVI	707295	.	T	C	859	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=15.91;SB=-6.720e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:892,99,0
chrXVI	707392	.	A	C	1702	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=20.02;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1735,192,0
chrXVI	707414	.	T	G	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=5.9783;MLEAC=2;MLEAF=1.00;MQ=55.54;MQ0=0;MQRankSum=-0.151;QD=21.05;ReadPosRankSum=1.657;SB=-6.770e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1970,216,0
chrXVI	707520	.	C	T	1261	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=20.02;SB=-5.380e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1294,141,0
chrXVI	707772	.	C	A	2119	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=22.54;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2152,231,0
chrXVI	707796	.	T	A	1980	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=20.62;SB=-1.021e+03	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2013,222,0
chrXVI	708078	.	G	A	1838	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=18.57;SB=-1.046e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1871,210,0
chrXVI	708162	.	G	T	1907	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.3576;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;QD=21.92;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1940,207,0
chrXVI	708208	.	C	T	1493	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.2982;MLEAC=2;MLEAF=1.00;MQ=57.74;MQ0=0;QD=18.43;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1526,162,0
chrXVI	708293	.	A	G	2468	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=21.09;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2501,273,0
chrXVI	708362	.	C	T	2580	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=23.45;SB=-1.183e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2613,276,0
chrXVI	708478	.	A	C	2655	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=21.24;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,125:125:99:2688,303,0
chrXVI	708483	.	A	T	2643	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=21.66;SB=-1.134e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2676,285,0
chrXVI	708490	.	A	C	2452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537;DP=125;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=0.335;QD=19.62;ReadPosRankSum=1.676;SB=-1.056e+03	GT:AD:DP:GQ:PL	1/1:1,123:125:99:2485,253,0
chrXVI	708518	.	G	T	1683	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=17.53;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1716,186,0
chrXVI	708653	.	A	G	1298	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.637;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=8.6168;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;MQRankSum=0.261;QD=17.78;ReadPosRankSum=1.685;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1331,150,0
chrXVI	708674	.	G	C	1150	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=19.17;SB=-7.000e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1183,129,0
chrXVI	708768	.	G	A	2045	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=20.05;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2078,225,0
chrXVI	708863	.	G	A	2012	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=21.63;SB=-1.257e+03	GT:AD:DP:GQ:PL	1/1:0,92:93:99:2045,216,0
chrXVI	708887	.	A	G	1417	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.03;MQ0=0;QD=17.49;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1450,165,0
chrXVI	708937	.	G	A	1662	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.79;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1695,177,0
chrXVI	709088	.	G	A	1736	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.11;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1769,195,0
chrXVI	709506	.	A	C	1896	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.397;DP=93;Dels=0.00;FS=6.962;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.225;QD=20.39;ReadPosRankSum=2.397;SB=-9.860e+02	GT:AD:DP:GQ:PL	1/1:2,91:93:99:1929,216,0
chrXVI	709796	.	C	T	1037	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=7.4141;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=16.46;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1070,114,0
chrXVI	709892	.	T	C	1099	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7552;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=14.65;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1132,126,0
chrXVI	709966	.	C	T	3146	PASS	AC=2;AF=1.00;AN=2;DP=156;Dels=0.00;FS=0.000;HaplotypeScore=7.4668;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=20.17;SB=-1.500e+03	GT:AD:DP:GQ:PL	1/1:0,156:156:99:3179,336,0
chrXVI	710043	.	T	C	2917	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=10.5444;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=23.52;SB=-8.760e+02	GT:AD:DP:GQ:PL	1/1:0,121:124:99:2950,327,0
chrXVI	710154	.	G	A	839	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=19.98;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,40:42:99:872,99,0
chrXVI	710988	.	G	A	2442	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=24.67;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2475,261,0
chrXVI	711113	.	A	G	2306	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=22.17;SB=-1.130e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2339,255,0
chrXVI	711619	.	C	G	1616	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.41;MQ0=0;QD=18.16;SB=-1.109e+03	GT:AD:DP:GQ:PL	1/1:0,88:89:99:1649,183,0
chrXVI	711691	.	T	A	2176	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=9.1543;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=20.34;SB=-1.118e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2209,234,0
chrXVI	712351	.	G	A	1750	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=9.5002;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=18.23;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1783,195,0
chrXVI	713880	.	T	C	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;DP=64;Dels=0.00;FS=2.925;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;MQRankSum=1.408;QD=23.87;ReadPosRankSum=2.373;SB=-6.600e+02	GT:AD:DP:GQ:PL	1/1:2,62:64:99:1561,171,0
chrXVI	714047	.	A	T	973	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=19.08;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1006,108,0
chrXVI	714048	.	T	C	936	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;QD=18.35;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:969,108,0
chrXVI	714075	.	T	C	695	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=16.95;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:78:728,78,0
chrXVI	714163	.	A	G	1403	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=19.22;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1436,156,0
chrXVI	714279	.	A	T	1980	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=22.50;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2013,222,0
chrXVI	714300	.	A	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.11;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1691,183,0
chrXVI	714342	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=21.41;SB=-8.270e+02	GT:AD:DP:GQ:PL	1/1:0,68:70:99:1532,168,0
chrXVI	714603	.	T	C	1999	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=21.73;SB=-9.770e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2032,222,0
chrXVI	714698	.	G	A	1687	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=23.76;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:0,70:71:99:1720,183,0
chrXVI	714728	.	A	G	1122	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=-1.670;QD=19.68;ReadPosRankSum=1.609;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:1,55:57:99:1155,129,0
chrXVI	714942	.	G	A	1711	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.9697;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=19.22;SB=-1.143e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1744,183,0
chrXVI	715729	.	G	A	2802	SnpCluster	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=2.7728;MLEAC=2;MLEAF=1.00;MQ=52.22;MQ0=0;QD=22.06;SB=-1.745e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2835,300,0
chrXVI	715730	.	G	A	2698	SnpCluster	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.7728;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=21.41;SB=-1.700e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2731,291,0
chrXVI	715739	.	A	G	2621	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.862;DP=124;Dels=0.00;FS=9.354;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;MQRankSum=0.081;QD=21.14;ReadPosRankSum=2.895;SB=-1.529e+03	GT:AD:DP:GQ:PL	1/1:3,121:124:99:2654,291,0
chrXVI	715781	.	G	A	2271	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=7.5382;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;QD=19.25;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2304,249,0
chrXVI	715923	.	G	A	1511	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=20.99;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1544,171,0
chrXVI	716432	.	T	C	921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.286;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.239;QD=20.47;ReadPosRankSum=2.231;SB=-3.520e+02	GT:AD:DP:GQ:PL	1/1:2,43:45:99:954,102,0
chrXVI	716474	.	T	A	494	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=14.97;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:0,33:33:57:527,57,0
chrXVI	716608	.	A	G	1214	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.30;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1247,135,0
chrXVI	716627	.	A	G	1253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=4.393;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.102;QD=18.70;ReadPosRankSum=1.680;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1286,144,0
chrXVI	716666	.	T	C	1313	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;MQRankSum=-1.060;QD=19.60;ReadPosRankSum=1.681;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1346,150,0
chrXVI	716753	.	C	T	1347	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=18.97;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1380,153,0
chrXVI	716879	.	A	G	654	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=19.24;SB=-4.410e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:75:687,75,0
chrXVI	716942	.	C	T	926	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=17.81;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:959,102,0
chrXVI	716972	.	A	C	1194	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;MQRankSum=0.577;QD=17.30;ReadPosRankSum=1.582;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1227,135,0
chrXVI	717019	.	G	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=19.55;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1323,141,0
chrXVI	717034	.	C	T	1331	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=20.48;SB=-5.170e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1364,144,0
chrXVI	717101	.	G	A	1405	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=21.29;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1438,156,0
chrXVI	717249	.	C	T	1199	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.98;SB=-5.900e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1232,132,0
chrXVI	718261	.	G	C	1456	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.48;SB=-3.210e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1489,162,0
chrXVI	720561	.	C	A	2589	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=23.75;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2622,276,0
chrXVI	720834	.	A	T	1149	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=0.999;QD=22.10;ReadPosRankSum=1.666;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1182,126,0
chrXVI	722078	.	C	G	1850	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.33;SB=-1.131e+03	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1883,210,0
chrXVI	724121	.	A	G	1435	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.626;QD=19.66;ReadPosRankSum=1.588;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1468,156,0
chrXVI	724279	.	T	C	1791	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=20.83;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1824,201,0
chrXVI	724286	.	C	T	1593	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.27;MQ0=0;QD=19.91;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1626,174,0
chrXVI	725082	.	A	T	1844	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.59;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1877,201,0
chrXVI	725291	.	T	A	2418	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.631;QD=22.60;ReadPosRankSum=1.700;SB=-1.189e+03	GT:AD:DP:GQ:PL	1/1:1,106:107:99:2451,258,0
chrXVI	725710	.	G	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=5.0147;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=21.85;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2065,219,0
chrXVI	726297	.	C	G	2755	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;DP=115;Dels=0.00;FS=5.166;HaplotypeScore=9.1347;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=-0.196;QD=23.96;ReadPosRankSum=0.527;SB=-9.340e+02	GT:AD:DP:GQ:PL	1/1:1,114:115:99:2788,306,0
chrXVI	726358	.	G	A	2470	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=5.4442;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=23.08;SB=-8.710e+02	GT:AD:DP:GQ:PL	1/1:0,105:107:99:2503,267,0
chrXVI	726386	.	C	T	1761	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=22.29;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1794,192,0
chrXVI	726480	.	A	G	1281	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=22.47;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1314,141,0
chrXVI	732154	.	C	T	1301	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=21.68;SB=-5.480e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1334,141,0
chrXVI	733425	.	G	A	1089	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=25.93;SB=-5.701e+01	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1122,117,0
chrXVI	733512	.	A	G	606	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=17.31;SB=-3.300e+02	GT:AD:DP:GQ:PL	1/1:0,34:35:69:639,69,0
chrXVI	733524	.	G	A	592	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=16.44;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,35:36:66:625,66,0
chrXVI	733636	.	T	C	1193	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-1.120e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1226,132,0
chrXVI	733707	.	A	G	1534	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=24.74;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1567,171,0
chrXVI	733816	.	T	G	1944	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=11.0415;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=20.25;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,94:96:99:1977,225,0
chrXVI	734148	.	T	A	1712	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.8784;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=20.88;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1745,186,0
chrXVI	734298	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=16.74;SB=-7.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1004,108,0
chrXVI	734520	.	C	G	1470	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.62;SB=-8.470e+02	GT:AD:DP:GQ:PL	1/1:0,64:68:99:1503,165,0
chrXVI	735447	.	G	T	1761	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.0498;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=23.48;SB=-9.380e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1794,189,0
chrXVI	735801	.	T	C	1589	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.48;MQ0=0;QD=21.47;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1622,180,0
chrXVI	735864	.	G	T	1243	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.53;MQ0=0;QD=19.12;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1276,135,0
chrXVI	735865	.	G	T	1246	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=20.10;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1279,135,0
chrXVI	735901	.	C	T	1209	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.590;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.09;MQ0=0;MQRankSum=0.736;QD=16.56;ReadPosRankSum=-0.261;SB=-7.970e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1242,132,0
chrXVI	735906	.	G	C	1130	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.15;MQ0=0;QD=14.30;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1163,126,0
chrXVI	736014	.	G	A	1439	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3655;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.14;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1472,159,0
chrXVI	736356	.	A	T	1628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;DP=71;Dels=0.00;FS=6.727;HaplotypeScore=5.8109;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-0.434;QD=22.93;ReadPosRankSum=2.381;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1661,177,0
chrXVI	736410	.	T	C	1536	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.3488;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=19.20;SB=-7.490e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1569,171,0
chrXVI	736455	.	A	G	1555	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;DP=85;Dels=0.00;FS=5.772;HaplotypeScore=3.6962;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;MQRankSum=-0.726;QD=18.29;ReadPosRankSum=2.822;SB=-9.160e+02	GT:AD:DP:GQ:PL	1/1:3,82:85:99:1588,177,0
chrXVI	736469	.	T	C	1812	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=1.361;QD=21.57;ReadPosRankSum=0.495;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1845,201,0
chrXVI	736718	.	C	G	1297	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.5707;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.98;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1330,147,0
chrXVI	737218	.	C	T	1796	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=20.88;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1829,195,0
chrXVI	737263	.	C	T	2166	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=19.34;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2199,246,0
chrXVI	737704	.	T	A	1487	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.2358;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=20.94;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1520,162,0
chrXVI	738241	.	A	G	1831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=87;Dels=0.00;FS=6.990;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=-0.754;QD=21.05;ReadPosRankSum=1.691;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,84:87:99:1864,204,0
chrXVI	738306	.	A	G	2310	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.8881;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=23.10;SB=-6.070e+02	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2343,255,0
chrXVI	738527	.	T	C	2542	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=132;Dels=0.00;FS=4.130;HaplotypeScore=7.4579;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=0.761;QD=19.26;ReadPosRankSum=1.680;SB=-1.342e+03	GT:AD:DP:GQ:PL	1/1:1,131:132:99:2575,282,0
chrXVI	738601	.	C	T	3002	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=22.92;SB=-1.717e+03	GT:AD:DP:GQ:PL	1/1:0,129:131:99:3035,324,0
chrXVI	738727	.	A	G	1475	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.669;DP=79;Dels=0.00;FS=7.937;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;MQRankSum=0.548;QD=18.67;ReadPosRankSum=3.421;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:6,72:79:99:1508,165,0
chrXVI	738757	.	C	T	1809	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=21.03;SB=-1.025e+03	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1842,201,0
chrXVI	738817	.	T	C	1898	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.19;SB=-1.040e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1931,210,0
chrXVI	738975	.	T	C	1734	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=20.64;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1767,192,0
chrXVI	739339	.	C	T	1416	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.1112;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=21.45;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1449,159,0
chrXVI	739690	.	C	T	1561	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=21.99;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1594,168,0
chrXVI	739738	.	G	A	1769	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=22.68;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1802,189,0
chrXVI	739829	.	C	T	1788	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=21.04;SB=-9.680e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1821,198,0
chrXVI	739882	.	A	G	1337	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=19.66;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1370,147,0
chrXVI	740090	.	C	T	1308	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=20.44;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1341,150,0
chrXVI	740140	.	G	A	1323	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-5.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1356,144,0
chrXVI	740246	.	A	C	1095	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.668;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.7765;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=-1.668;QD=20.28;ReadPosRankSum=1.604;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1128,126,0
chrXVI	740267	.	C	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=18.40;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1137,123,0
chrXVI	740348	.	G	A	1257	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=18.76;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1290,141,0
chrXVI	740362	.	G	A	1243	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=19.73;SB=-6.220e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1276,135,0
chrXVI	740531	.	A	G	1942	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=22.58;SB=-4.590e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1975,225,0
chrXVI	741532	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.7104;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=21.01;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,82:84:99:1798,195,0
chrXVI	741709	.	C	G	1790	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.4406;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=23.25;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1823,198,0
chrXVI	741944	.	C	G	1810	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.9742;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=21.81;SB=-8.800e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1843,207,0
chrXVI	742069	.	T	A	1698	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=19.74;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1731,186,0
chrXVI	742334	.	A	G	1248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.185;QD=21.89;ReadPosRankSum=1.611;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1281,141,0
chrXVI	742567	.	T	C	1600	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=21.33;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1633,183,0
chrXVI	743245	.	A	G	874	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.85;SB=-4.620e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:99:907,102,0
chrXVI	743518	.	C	T	1681	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.0715;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=22.41;SB=-9.330e+02	GT:AD:DP:GQ:PL	1/1:0,74:75:99:1714,183,0
chrXVI	743973	.	G	A	1057	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=22.98;SB=-3.230e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1090,117,0
chrXVI	744256	.	T	A	1086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;MQRankSum=0.330;QD=25.86;ReadPosRankSum=1.650;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:1,41:42:99:1119,120,0
chrXVI	744403	.	A	C	1317	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=5.290;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.32;MQ0=0;MQRankSum=0.220;QD=18.55;ReadPosRankSum=1.635;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:1,70:71:99:1350,150,0
chrXVI	744410	.	A	C	1370	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=78;Dels=0.00;FS=5.063;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=46.89;MQ0=0;MQRankSum=-0.022;QD=17.56;ReadPosRankSum=1.687;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1403,153,0
chrXVI	744451	.	A	T	2291	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;DP=122;Dels=0.00;FS=7.728;HaplotypeScore=6.3327;MLEAC=2;MLEAF=1.00;MQ=47.41;MQ0=0;MQRankSum=0.783;QD=18.78;ReadPosRankSum=2.389;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:2,120:122:99:2324,252,0
chrXVI	744459	.	A	G	2304	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;DP=128;Dels=0.00;FS=3.912;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;MQRankSum=0.271;QD=18.00;ReadPosRankSum=1.705;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:1,127:128:99:2337,258,0
chrXVI	744462	.	C	T	2282	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=17.97;SB=-1.434e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2315,246,0
chrXVI	744531	.	A	G	2103	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=20.22;SB=-1.059e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2136,243,0
chrXVI	744598	.	C	T	1544	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=21.15;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:0,72:73:99:1577,168,0
chrXVI	744651	.	G	A	2173	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=9.6489;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=21.30;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2206,234,0
chrXVI	744740	.	C	A	3929.01	PASS	AC=2;AF=1.00;AN=2;DP=169;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=55.77;MQ0=0;QD=23.25;SB=-1.911e+03	GT:AD:DP:GQ:PL	1/1:0,169:169:99:3929,417,0
chrXVI	744781	.	G	A	2748	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.93;MQ0=0;QD=23.90;SB=-1.091e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2781,303,0
chrXVI	744894	.	C	T	1458	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=11.2896;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=20.83;SB=-6.800e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1491,159,0
chrXVI	744935	.	C	A	1411	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.60;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1444,156,0
chrXVI	745157	.	C	T	2421	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.3539;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=24.21;SB=-6.250e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2454,261,0
chrXVI	745381	.	T	A	3015	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=10.1293;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.276;QD=23.02;ReadPosRankSum=1.705;SB=-7.920e+02	GT:AD:DP:GQ:PL	1/1:1,130:131:99:3048,327,0
chrXVI	745441	.	A	G	3616.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=149;Dels=0.00;FS=5.934;HaplotypeScore=10.4010;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;MQRankSum=-1.732;QD=24.27;ReadPosRankSum=1.686;SB=-9.670e+02	GT:AD:DP:GQ:PL	1/1:1,148:149:99:3616,399,0
chrXVI	745578	.	A	G	2181	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.404;QD=18.64;ReadPosRankSum=1.702;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:1,116:117:99:2214,246,0
chrXVI	745623	.	C	T	2652	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=8.8366;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.24;SB=-1.344e+03	GT:AD:DP:GQ:PL	1/1:0,130:131:99:2685,294,0
chrXVI	745701	.	T	C	3944.01	PASS	AC=2;AF=1.00;AN=2;DP=186;Dels=0.00;FS=0.000;HaplotypeScore=5.9897;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=21.20;SB=-1.589e+03	GT:AD:DP:GQ:PL	1/1:0,184:186:99:3944,426,0
chrXVI	745879	.	C	T	1644	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=23.49;SB=-8.180e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1677,177,0
chrXVI	746398	.	A	G	1080	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=20.00;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1113,120,0
chrXVI	746530	.	G	A	1498	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.01;FS=0.000;HaplotypeScore=7.6189;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.40;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1531,162,0
chrXVI	746797	.	C	T	1417	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;QD=20.54;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1450,156,0
chrXVI	746850	.	A	G	1265	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=20.08;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1298,144,0
chrXVI	747066	.	T	C	2607	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.410;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-1.249;QD=20.69;ReadPosRankSum=2.135;SB=-1.018e+03	GT:AD:DP:GQ:PL	1/1:2,123:126:99:2640,294,0
chrXVI	747080	.	G	C	2391	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.7346;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=20.26;SB=-9.430e+02	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2424,267,0
chrXVI	747138	.	G	T	1799	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=19.99;SB=-6.650e+02	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1832,198,0
chrXVI	747369	.	T	C	2043	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.696;DP=96;Dels=0.00;FS=6.160;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.784;QD=21.28;ReadPosRankSum=1.696;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,94:96:99:2076,228,0
chrXVI	747409	.	A	T	1556	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.9350;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=19.45;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1589,174,0
chrXVI	747485	.	A	G	1176	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.675;QD=19.60;ReadPosRankSum=1.674;SB=-4.970e+02	GT:AD:DP:GQ:PL	1/1:1,58:60:99:1209,135,0
chrXVI	747548	.	G	A	1266	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=4.9266;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=19.48;SB=-7.820e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1299,138,0
chrXVI	747629	.	T	C	1099	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=19.28;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1132,126,0
chrXVI	747887	.	T	C	1162	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=56.99;MQ0=0;QD=20.03;SB=-7.140e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1195,129,0
chrXVI	747911	.	G	A	1626	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=20.58;SB=-8.130e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1659,177,0
chrXVI	747971	.	C	G	1916	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=21.53;SB=-4.800e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1949,222,0
chrXVI	748200	.	T	C	1656	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=21.79;SB=-9.130e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1689,183,0
chrXVI	748244	.	A	G	1449	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;MQRankSum=-1.287;QD=20.41;ReadPosRankSum=1.683;SB=-8.200e+02	GT:AD:DP:GQ:PL	1/1:1,69:71:99:1482,162,0
chrXVI	748400	.	C	T	2046	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=24.36;SB=-1.017e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2079,219,0
chrXVI	748650	.	C	T	1830	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=22.05;SB=-1.103e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1863,198,0
chrXVI	748734	.	C	T	2296	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=22.96;SB=-1.123e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2329,249,0
chrXVI	749484	.	A	T	1500	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.43;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1533,168,0
chrXVI	749668	.	C	T	2222	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=23.15;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2255,240,0
chrXVI	749741	.	C	T	1151	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.84;SB=-6.590e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1184,126,0
chrXVI	749787	.	A	G	897	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=19.09;SB=-6.020e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:930,105,0
chrXVI	750029	.	C	T	1396	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;QD=18.13;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1429,150,0
chrXVI	750033	.	T	C	1304	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=17.16;SB=-6.300e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1337,150,0
chrXVI	750118	.	C	T	1035	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=21.56;SB=-3.260e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1068,114,0
chrXVI	750588	.	T	C	1297	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.95;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1330,147,0
chrXVI	750734	.	A	G	1459	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=72;Dels=0.00;FS=7.318;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;MQRankSum=-0.340;QD=20.26;ReadPosRankSum=2.379;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:2,67:72:99:1492,162,0
chrXVI	750765	.	G	C	1576	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=21.89;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1609,180,0
chrXVI	750807	.	T	C	1415	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=21.77;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1448,159,0
chrXVI	750943	.	C	G	1520	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=22.35;SB=-9.250e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1553,168,0
chrXVI	751172	.	A	G	2217	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=21.95;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2250,246,0
chrXVI	751586	.	G	A	1478	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=5.9631;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=18.71;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1511,162,0
chrXVI	751611	.	G	T	1344	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=19.20;SB=-8.610e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1377,147,0
chrXVI	752022	.	A	T	677	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=3.9869;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.30;SB=-3.650e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:75:710,75,0
chrXVI	752166	.	C	A	1858	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=4.8101;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=23.82;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1891,201,0
chrXVI	752508	.	T	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.80;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1406,159,0
chrXVI	753099	.	G	A	1474	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=10.5010;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.76;SB=-6.830e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1507,162,0
chrXVI	753173	.	G	A	992	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=20.67;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1025,108,0
chrXVI	753218	.	A	G	767	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=41.4817;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=19.67;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:87:800,87,0
chrXVI	753336	.	A	G	629	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;QD=15.72;SB=-4.640e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:75:662,75,0
chrXVI	753339	.	T	C	588	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=14.34;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:69:621,69,0
chrXVI	753414	.	A	T	893	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=15.95;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:926,102,0
chrXVI	753479	.	A	C	1373	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.51;SB=-5.760e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1406,153,0
chrXVI	753640	.	C	T	971	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=23.68;SB=-3.130e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1004,108,0
chrXVI	753882	.	C	T	1765	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.52;SB=-8.040e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1798,195,0
chrXVI	754681	.	G	A	1106	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.11;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1139,120,0
chrXVI	754744	.	T	A	1218	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=21.00;SB=-6.170e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1251,135,0
chrXVI	755191	.	A	G	1078	SnpCluster	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=17.11;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1111,123,0
chrXVI	755194	.	C	T	1153	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.51;MQ0=0;QD=17.21;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1186,126,0
chrXVI	755201	.	A	G	1103	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;DP=76;Dels=0.00;FS=3.050;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.431;QD=14.51;ReadPosRankSum=2.384;SB=-8.900e+02	GT:AD:DP:GQ:PL	1/1:2,73:76:99:1136,126,0
chrXVI	755242	.	T	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=18.38;SB=-9.930e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1485,162,0
chrXVI	755692	.	C	T	1390	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=19.31;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1423,156,0
chrXVI	755818	.	C	T	2256	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=22.79;SB=-9.660e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2289,249,0
chrXVI	755941	.	A	T	1036	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=19.92;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1069,114,0
chrXVI	755950	.	G	C	1016	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=18.14;SB=-5.770e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1049,117,0
chrXVI	756115	.	T	A	1325	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=3.802;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;MQRankSum=0.058;QD=22.08;ReadPosRankSum=1.675;SB=-6.470e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1358,144,0
chrXVI	756136	.	G	A	1034	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=19.15;SB=-5.930e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1067,117,0
chrXVI	756619	.	T	G	801	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=17.41;SB=-3.050e+02	GT:AD:DP:GQ:PL	1/1:0,45:46:93:834,93,0
chrXVI	756671	.	T	A	1495	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-1.138;QD=21.36;ReadPosRankSum=1.633;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1528,162,0
chrXVI	756770	.	G	A	640	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=16.41;SB=-4.450e+02	GT:AD:DP:GQ:PL	1/1:0,38:39:72:673,72,0
chrXVI	756785	.	A	C	633	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.568;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;MQRankSum=-1.485;QD=15.07;ReadPosRankSum=1.650;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:72:666,72,0
chrXVI	756925	.	G	A	1050	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=22.34;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1083,114,0
chrXVI	756979	.	T	C	833	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=3.108;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.193;QD=18.51;ReadPosRankSum=1.655;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:1,44:45:93:866,93,0
chrXVI	757069	.	G	T	1126	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=21.25;SB=-4.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1159,123,0
chrXVI	757111	.	T	C	998	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.599;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;MQRankSum=-0.866;QD=19.19;ReadPosRankSum=1.599;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1031,114,0
chrXVI	757135	.	G	T	1008	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=18.67;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,52:54:99:1041,111,0
chrXVI	757155	.	T	C	992	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=52.24;MQ0=0;QD=17.40;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1025,114,0
chrXVI	757526	.	G	T	1282	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.7841;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=17.32;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1315,144,0
chrXVI	757653	.	T	C	1180	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=17.35;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1213,132,0
chrXVI	757669	.	A	G	1312	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=17.73;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1345,150,0
chrXVI	758098	.	T	C	2853	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.959;QD=23.39;ReadPosRankSum=1.703;SB=-9.900e+02	GT:AD:DP:GQ:PL	1/1:1,120:122:99:2886,315,0
chrXVI	758116	.	G	A	2582	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=22.07;SB=-1.362e+03	GT:AD:DP:GQ:PL	1/1:0,117:117:99:2615,273,0
chrXVI	758257	.	C	T	2570	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=4.0303;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=24.25;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2603,273,0
chrXVI	758284	.	G	A	3437.01	PASS	AC=2;AF=1.00;AN=2;DP=147;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=23.38;SB=-1.483e+03	GT:AD:DP:GQ:PL	1/1:0,147:147:99:3437,372,0
chrXVI	758304	.	A	G	4061.01	PASS	AC=2;AF=1.00;AN=2;DP=180;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=22.56;SB=-1.597e+03	GT:AD:DP:GQ:PL	1/1:0,177:180:99:4061,453,0
chrXVI	758351	.	C	T	4235.01	PASS	AC=2;AF=1.00;AN=2;DP=193;Dels=0.00;FS=0.000;HaplotypeScore=9.3045;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=21.94;SB=-2.007e+03	GT:AD:DP:GQ:PL	1/1:0,192:193:99:4235,462,0
chrXVI	758393	.	T	C	3000	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;DP=135;Dels=0.00;FS=3.757;HaplotypeScore=4.0933;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.524;QD=22.22;ReadPosRankSum=1.706;SB=-1.485e+03	GT:AD:DP:GQ:PL	1/1:1,132:135:99:3033,336,0
chrXVI	758616	.	T	C	1530	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=19.62;SB=-4.930e+02	GT:AD:DP:GQ:PL	1/1:0,75:78:99:1563,174,0
chrXVI	758824	.	G	T	1411	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.0869;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=17.21;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1444,156,0
chrXVI	758911	.	A	G	1713	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=4.4628;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=22.84;SB=-7.440e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1746,195,0
chrXVI	758947	.	G	A	1092	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=20.60;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1125,126,0
chrXVI	758960	.	G	A	1088	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.4174;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=21.76;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1121,123,0
chrXVI	759242	.	C	T	1591	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=6.6374;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.06;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1624,174,0
chrXVI	759277	.	C	G	1273	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.6540;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=20.53;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1306,150,0
chrXVI	759355	.	C	G	1505	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=23.52;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1538,165,0
chrXVI	759400	.	T	G	1576	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=22.84;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1609,174,0
chrXVI	759469	.	T	G	1599	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=20.77;SB=-9.170e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1632,177,0
chrXVI	759544	.	A	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=12.8218;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.94;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1588,171,0
chrXVI	759776	.	C	A	1681	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.7097;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=24.01;SB=-8.490e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1714,183,0
chrXVI	759895	.	C	A	1879	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.0169;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.20;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1912,201,0
chrXVI	759936	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=6.2838;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=21.37;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,75:76:99:1657,177,0
chrXVI	760007	.	C	T	1724	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=22.39;SB=-9.620e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1757,192,0
chrXVI	760748	.	T	A	1661	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.543;QD=24.79;ReadPosRankSum=1.681;SB=-4.570e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1694,186,0
chrXVI	760882	.	G	A	2424	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.87;SB=-1.292e+03	GT:AD:DP:GQ:PL	1/1:0,104:106:99:2457,267,0
chrXVI	761136	.	G	A	2321	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.21;SB=-1.260e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2354,249,0
chrXVI	761833	.	A	T	1615	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.258;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=11.1840;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;MQRankSum=1.105;QD=20.97;ReadPosRankSum=2.322;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:2,75:77:99:1648,177,0
chrXVI	761908	.	T	C	1765	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1560;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=22.06;SB=-6.780e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1798,198,0
chrXVI	762781	.	T	C	1289	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=21.85;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1322,150,0
chrXVI	763080	.	G	T	1357	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=19.67;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:69:99:1390,150,0
chrXVI	763440	.	T	C	1269	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=18.13;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1302,147,0
chrXVI	764416	.	A	G	2122	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=7.8868;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=20.60;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2155,234,0
chrXVI	764615	.	A	T	1223	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.09;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1256,132,0
chrXVI	765108	.	G	A	1262	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=20.69;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1295,138,0
chrXVI	766198	.	G	A	1076	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=21.10;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1109,120,0
chrXVI	766340	.	C	A	1402	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.62;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1435,156,0
chrXVI	766882	.	T	C	888	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=19.73;SB=-5.680e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:99:921,102,0
chrXVI	767513	.	C	T	1895	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=59.85;MQ0=0;QD=23.40;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1928,207,0
chrXVI	767821	.	T	C	1497	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.96;SB=-7.600e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1530,171,0
chrXVI	768045	.	G	A	1567	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=19.84;SB=-9.090e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1600,168,0
chrXVI	768244	.	G	A	1412	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=19.34;SB=-8.260e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1445,153,0
chrXVI	768318	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.1557;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=20.94;SB=-5.710e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1143,126,0
chrXVI	768466	.	T	A	1627	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=4.3298;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.469;QD=19.14;ReadPosRankSum=0.387;SB=-4.140e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1660,177,0
chrXVI	768715	.	G	A	1861	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=5.7254;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=23.86;SB=-5.540e+02	GT:AD:DP:GQ:PL	1/1:0,77:78:99:1894,201,0
chrXVI	768950	.	A	G	1105	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=49.94;MQ0=0;QD=17.82;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1138,126,0
chrXVI	769175	.	C	T	2273	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.36;MQ0=0;QD=24.71;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2306,249,0
chrXVI	769532	.	G	A	39.97	filter	AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.36;MQ0=0;QD=9.99;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,4:4:9:72,9,0
chrXVI	769580	.	A	G	18.82	LowQual;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=0;MQRankSum=0.736;QD=6.27;ReadPosRankSum=0.736;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,2:3:6:50,6,0
chrXVI	769669	.	T	A	307	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.455;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=39.77;MQ0=0;MQRankSum=-1.317;QD=5.58;ReadPosRankSum=1.386;SB=-5.400e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:36:340,36,0
chrXVI	769677	.	A	G	928	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=4.8552;MLEAC=2;MLEAF=1.00;MQ=43.29;MQ0=0;QD=12.54;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:961,105,0
chrXVI	769881	.	C	T	868	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8111;MLEAC=2;MLEAF=1.00;MQ=35.90;MQ0=0;QD=17.71;SB=-2.860e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:901,99,0
chrXVI	769893	.	G	A	728	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;QD=19.68;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:81:761,81,0
chrXVI	770049	.	A	T	1506	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.01;FS=0.000;HaplotypeScore=4.9099;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=16.19;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1539,162,0
chrXVI	770077	.	T	C	1547	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.92;MQ0=0;QD=18.20;SB=-5.601e+01	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1580,171,0
chrXVI	770116	.	A	G	1116	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.268;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=41.13;MQ0=0;MQRankSum=-2.077;QD=16.66;ReadPosRankSum=3.321;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:4,63:67:99:1149,129,0
chrXVI	770162	.	A	T	584	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=8.98;SB=-9.101e+01	GT:AD:DP:GQ:PL	1/1:0,65:65:66:617,66,0
chrXVI	770667	.	C	G	1271	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=68.2465;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=16.95;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1304,147,0
chrXVI	770699	.	T	A	1307	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.36;MQ0=0;QD=16.14;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1340,144,0
chrXVI	770786	.	A	T	1159	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=23.18;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1192,126,0
chrXVI	770940	.	A	T	831	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.516;DP=41;Dels=0.00;FS=5.825;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.924;QD=20.27;ReadPosRankSum=2.722;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:3,38:41:96:864,96,0
chrXVI	771925	.	C	T	1120	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.83;SB=-3.090e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1153,123,0
chrXVI	772366	.	C	T	2849	PASS	AC=2;AF=1.00;AN=2;DP=133;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.42;SB=-1.730e+03	GT:AD:DP:GQ:PL	1/1:0,133:133:99:2882,306,0
chrXVI	773032	.	T	C	1359	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=19.14;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1392,153,0
chrXVI	773799	.	T	A	1585	filter	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1618,171,0
chrXVI	774130	.	C	T	1726	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=4.9381;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=19.84;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1759,195,0
chrXVI	774271	.	C	T	1517	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=19.70;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1550,165,0
chrXVI	774322	.	A	G	1168	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=20.14;SB=-6.230e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1201,132,0
chrXVI	774739	.	T	C	1556	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=9.6978;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;MQRankSum=0.793;QD=21.92;ReadPosRankSum=2.380;SB=-3.480e+02	GT:AD:DP:GQ:PL	1/1:2,68:71:99:1589,177,0
chrXVI	774905	.	A	G	1140	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=18.10;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1173,129,0
chrXVI	775111	.	C	T	1294	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7208;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=19.61;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1327,141,0
chrXVI	775174	.	C	A	1335	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=20.86;SB=-5.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1368,150,0
chrXVI	775730	.	G	T	64.51	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.6873;MLEAC=2;MLEAF=1.00;MQ=50.75;MQ0=0;QD=0.71;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,88:91:12:97,12,0
chrXVI	775853	.	T	G	1465	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.277;DP=70;Dels=0.00;FS=2.463;HaplotypeScore=4.1441;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;MQRankSum=-0.266;QD=20.93;ReadPosRankSum=2.872;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:4,66:70:99:1498,165,0
chrXVI	775873	.	T	G	1264	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.45;MQ0=0;MQRankSum=0.311;QD=16.21;ReadPosRankSum=1.688;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:1,77:78:99:1297,144,0
chrXVI	775877	.	T	G	1318	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.818;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;MQRankSum=-0.427;QD=15.88;ReadPosRankSum=2.916;SB=-2.480e+02	GT:AD:DP:GQ:PL	1/1:3,80:83:99:1351,147,0
chrXVI	776091	.	G	C	2597	SnpCluster	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.75;MQ0=0;QD=23.61;SB=-5.430e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2630,294,0
chrXVI	776094	.	G	A	2425	SnpCluster	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.58;MQ0=0;QD=21.85;SB=-5.340e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:2458,273,0
chrXVI	776099	.	A	G	2295	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=106;Dels=0.00;FS=7.424;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-1.633;QD=21.65;ReadPosRankSum=1.699;SB=-4.610e+02	GT:AD:DP:GQ:PL	1/1:1,104:106:99:2328,249,0
chrXVI	776262	.	G	A	3637.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=13.6021;MLEAC=2;MLEAF=1.00;MQ=55.24;MQ0=0;QD=22.59;SB=-1.202e+03	GT:AD:DP:GQ:PL	1/1:0,161:161:99:3637,387,0
chrXVI	776361	.	G	T	4706.01	PASS	AC=2;AF=1.00;AN=2;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=25.2729;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.52;SB=-2.129e+03	GT:AD:DP:GQ:PL	1/1:0,197:209:99:4706,502,0
chrXVI	776624	.	T	C	1771	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=3.3394;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=19.04;SB=-3.310e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1804,195,0
chrXVI	776686	.	A	G	2896	PASS	AC=2;AF=1.00;AN=2;DP=135;Dels=0.00;FS=0.000;HaplotypeScore=8.8244;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=21.45;SB=-1.010e+03	GT:AD:DP:GQ:PL	1/1:0,134:135:99:2929,321,0
chrXVI	776791	.	C	T	3218.01	PASS	AC=2;AF=1.00;AN=2;DP=152;Dels=0.00;FS=0.000;HaplotypeScore=6.7237;MLEAC=2;MLEAF=1.00;MQ=51.18;MQ0=0;QD=21.17;SB=-1.537e+03	GT:AD:DP:GQ:PL	1/1:0,151:152:99:3251,357,0
chrXVI	776883	.	T	C	992	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.03;MQ0=0;QD=19.84;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1025,114,0
chrXVI	776885	.	T	C	940	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.14;MQ0=0;QD=19.18;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:973,111,0
chrXVI	776897	.	C	G	830	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=20.24;SB=-2.230e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:863,93,0
chrXVI	776901	.	T	C	828	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.28;MQ0=0;QD=20.20;SB=-2.170e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:93:861,93,0
chrXVI	776932	.	G	A	850	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=34.2860;MLEAC=2;MLEAF=1.00;MQ=39.85;MQ0=0;QD=17.71;SB=-2.600e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:93:883,93,0
chrXVI	776990	.	G	C	1343	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.12;MQ0=0;QD=16.79;SB=-2.200e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1376,147,0
chrXVI	777033	.	T	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.01;FS=0.000;HaplotypeScore=90.6208;MLEAC=2;MLEAF=1.00;MQ=31.98;MQ0=0;QD=18.18;SB=-2.701e+01	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1687,186,0
chrXVI	777046	.	G	A	1617	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=70.5527;MLEAC=2;MLEAF=1.00;MQ=30.04;MQ0=0;QD=17.97;SB=-2.901e+01	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1650,177,0
chrXVI	777082	.	T	A	1062	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.95;MQ0=0;QD=23.09;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1095,117,0
chrXVI	777117	.	C	G	819	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=19.05;SB=-2.300e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:96:852,96,0
chrXVI	777167	.	A	G	2476	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.58;SB=-2.400e+02	GT:AD:DP:GQ:PL	1/1:0,102:105:99:2509,291,0
chrXVI	777255	.	G	A	1415	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.67;MQ0=0;QD=21.77;SB=-1.720e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1448,162,0
chrXVI	777332	.	C	T	1223	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.9643;MLEAC=2;MLEAF=1.00;MQ=48.92;MQ0=0;QD=25.48;SB=-8.301e+01	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1256,132,0
chrXVI	777410	.	C	T	1874	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=21.30;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1907,201,0
chrXVI	777469	.	G	T	2685	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.75;SB=-1.375e+03	GT:AD:DP:GQ:PL	1/1:0,117:118:99:2718,288,0
chrXVI	777662	.	G	A	1029	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.55;MQ0=0;QD=14.10;SB=-8.400e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1062,111,0
chrXVI	777667	.	C	T	891	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9243;MLEAC=2;MLEAF=1.00;MQ=44.30;MQ0=0;QD=12.37;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:924,102,0
chrXVI	777676	.	C	T	821	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=56.0292;MLEAC=2;MLEAF=1.00;MQ=43.08;MQ0=0;QD=12.44;SB=-8.290e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:90:854,90,0
chrXVI	778030	.	A	G	1571	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=51.34;MQ0=0;QD=18.06;SB=-1.020e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1604,180,0
chrXVI	778041	.	C	T	1859	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.4007;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=18.41;SB=-1.184e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1892,201,0
chrXVI	778075	.	C	T	1916	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;QD=19.16;SB=-1.305e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:1949,207,0
chrXVI	778447	.	C	T	2174	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.70;SB=-1.160e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2207,237,0
chrXVI	778611	.	C	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.9198;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=20.00;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1893,204,0
chrXVI	779145	.	T	A	1502	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=23.84;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1535,162,0
chrXVI	779218	.	C	T	1103	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.81;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1136,126,0
chrXVI	779267	.	G	A	1328	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=20.12;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1361,144,0
chrXVI	779914	.	A	G	1531	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=69;Dels=0.00;FS=6.021;HaplotypeScore=6.9887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.306;QD=22.19;ReadPosRankSum=1.630;SB=-3.790e+02	GT:AD:DP:GQ:PL	1/1:1,67:69:99:1564,168,0
chrXVI	780119	.	A	C	1679	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=20.99;SB=-7.690e+02	GT:AD:DP:GQ:PL	1/1:0,79:80:99:1712,189,0
chrXVI	780140	.	G	A	1854	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=22.34;SB=-9.630e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1887,201,0
chrXVI	780407	.	C	T	2642	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.05;FS=0.000;HaplotypeScore=72.0529;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=21.66;SB=-1.409e+03	GT:AD:DP:GQ:PL	1/1:0,116:116:99:2675,294,0
chrXVI	780448	.	T	C	2123	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.01;FS=0.000;HaplotypeScore=14.8358;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=23.59;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2156,237,0
chrXVI	780474	.	T	A	2089	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=23.74;SB=-7.300e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2122,228,0
chrXVI	780767	.	T	A	2491	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;MQRankSum=-0.433;QD=19.31;ReadPosRankSum=1.705;SB=-1.439e+03	GT:AD:DP:GQ:PL	1/1:1,128:129:99:2524,285,0
chrXVI	781039	.	A	T	4117.01	PASS	AC=2;AF=1.00;AN=2;DP=174;Dels=0.01;FS=0.000;HaplotypeScore=5.6788;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=23.66;SB=-1.861e+03	GT:AD:DP:GQ:PL	1/1:0,173:173:99:4117,444,0
chrXVI	781070	.	C	T	3230.05	PASS	AC=2;AF=1.00;AN=2;DP=143;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=22.59;SB=-1.815e+03	GT:AD:DP:GQ:PL	1/1:0,142:143:99:3264,342,0
chrXVI	781224	.	C	T	4128.01	PASS	AC=2;AF=1.00;AN=2;DP=166;Dels=0.00;FS=0.000;HaplotypeScore=8.4982;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=24.87;SB=-1.269e+03	GT:AD:DP:GQ:PL	1/1:0,166:166:99:4128,433,0
chrXVI	781649	.	C	A	1463	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.02;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=17.21;SB=-9.280e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1496,159,0
chrXVI	782329	.	C	T	1107	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.57;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1140,129,0
chrXVI	782559	.	C	A	916	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=5.3566;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=19.08;SB=-5.610e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:949,99,0
chrXVI	782800	.	G	A	1165	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=22.40;SB=-4.280e+02	GT:AD:DP:GQ:PL	1/1:0,49:52:99:1198,126,0
chrXVI	782897	.	A	G	1650	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=23.57;SB=-8.790e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1683,183,0
chrXVI	783424	.	C	A	1534	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.91;SB=-6.510e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1567,165,0
chrXVI	784177	.	C	T	1470	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5612;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.590;QD=20.14;ReadPosRankSum=0.973;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:1,72:73:99:1503,159,0
chrXVI	784381	.	A	G	1558	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.64;SB=-8.660e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1591,174,0
chrXVI	784693	.	T	C	1626	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.91;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1659,183,0
chrXVI	784888	.	T	C	1281	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=3.540;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;MQRankSum=0.994;QD=20.66;ReadPosRankSum=1.619;SB=-6.910e+02	GT:AD:DP:GQ:PL	1/1:1,60:62:99:1314,144,0
chrXVI	784912	.	C	T	1708	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.4471;MLEAC=2;MLEAF=1.00;MQ=56.59;MQ0=0;QD=20.83;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1741,186,0
chrXVI	785197	.	A	G	2053	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=23.60;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,85:87:99:2086,228,0
chrXVI	785578	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.63;SB=-6.060e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1187,129,0
chrXVI	785712	.	T	G	1282	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.322;DP=58;Dels=0.00;FS=3.082;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.234;QD=22.10;ReadPosRankSum=2.365;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1315,141,0
chrXVI	785737	.	A	G	1230	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.50;SB=-7.070e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1263,138,0
chrXVI	785910	.	A	G	1403	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=23.00;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1436,162,0
chrXVI	786186	.	T	A	4093.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.266;DP=182;Dels=0.00;FS=5.246;HaplotypeScore=29.1376;MLEAC=2;MLEAF=1.00;MQ=42.04;MQ0=0;MQRankSum=0.839;QD=22.49;ReadPosRankSum=3.411;SB=-1.805e+03	GT:AD:DP:GQ:PL	1/1:4,178:182:99:4093,447,0
chrXVI	786231	.	C	T	3941.01	PASS	AC=2;AF=1.00;AN=2;DP=167;Dels=0.00;FS=0.000;HaplotypeScore=2.7165;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=23.60;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,167:167:99:3941,432,0
chrXVI	786234	.	C	T	3773.01	PASS	AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=2.7165;MLEAC=2;MLEAF=1.00;MQ=37.70;MQ0=0;QD=23.29;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,161:162:99:3773,408,0
chrXVI	786282	.	T	C	23.03	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DP=94;Dels=0.00;FS=20.098;HaplotypeScore=4.1281;MLEAC=1;MLEAF=0.500;MQ=38.09;MQ0=0;MQRankSum=1.599;QD=0.24;ReadPosRankSum=2.138;SB=-1.290e+02	GT:AD:DP:GQ:PL	0/1:56,38:94:53:53,0,889
chrXVI	786288	.	G	A	92.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.218;DP=87;Dels=0.00;FS=1.858;HaplotypeScore=7.2828;MLEAC=1;MLEAF=0.500;MQ=37.82;MQ0=0;MQRankSum=1.317;QD=1.06;ReadPosRankSum=1.438;SB=-2.470e+02	GT:AD:DP:GQ:PL	0/1:42,45:87:99:122,0,572
chrXVI	786303	.	T	C	357.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290;DP=93;Dels=0.00;FS=5.815;HaplotypeScore=5.5208;MLEAC=1;MLEAF=0.500;MQ=40.81;MQ0=0;MQRankSum=-4.031;QD=3.84;ReadPosRankSum=-0.708;SB=-1.370e+02	GT:AD:DP:GQ:PL	0/1:61,32:93:99:387,0,556
chrXVI	786306	.	G	A	381.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.367;DP=97;Dels=0.00;FS=7.551;HaplotypeScore=6.3874;MLEAC=1;MLEAF=0.500;MQ=41.77;MQ0=0;MQRankSum=-4.042;QD=3.93;ReadPosRankSum=-0.344;SB=-1.090e+02	GT:AD:DP:GQ:PL	0/1:66,31:97:99:411,0,598
chrXVI	786312	.	T	C	262.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;DP=96;Dels=0.00;FS=14.896;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=43.24;MQ0=0;MQRankSum=-3.714;QD=2.73;ReadPosRankSum=0.680;SB=-2.701e+01	GT:AD:DP:GQ:PL	0/1:70,26:96:99:292,0,732
chrXVI	786315	.	T	C	239.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.424;DP=95;Dels=0.00;FS=15.815;HaplotypeScore=3.2327;MLEAC=1;MLEAF=0.500;MQ=43.76;MQ0=0;MQRankSum=-3.369;QD=2.52;ReadPosRankSum=0.689;SB=-3.007e+00	GT:AD:DP:GQ:PL	0/1:70,24:95:99:269,0,810
chrXVI	786324	.	A	G	204.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.962;DP=107;Dels=0.00;FS=21.844;HaplotypeScore=8.1550;MLEAC=1;MLEAF=0.500;MQ=45.87;MQ0=0;MQRankSum=-4.968;QD=1.91;ReadPosRankSum=1.168;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,22:107:99:234,0,983
chrXVI	786327	.	G	A	170.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;DP=109;Dels=0.00;FS=21.844;HaplotypeScore=8.0770;MLEAC=1;MLEAF=0.500;MQ=46.44;MQ0=0;MQRankSum=-4.074;QD=1.56;ReadPosRankSum=0.089;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:85,22:109:99:200,0,1064
chrXVI	786331	.	T	G	98.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;DP=108;Dels=0.00;FS=17.586;HaplotypeScore=6.4996;MLEAC=1;MLEAF=0.500;MQ=47.93;MQ0=0;MQRankSum=-4.412;QD=0.91;ReadPosRankSum=1.130;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:91,17:108:99:128,0,1206
chrXVI	786332	.	T	C	100.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DP=111;Dels=0.00;FS=15.072;HaplotypeScore=4.9223;MLEAC=1;MLEAF=0.500;MQ=48.34;MQ0=0;MQRankSum=-4.879;QD=0.90;ReadPosRankSum=1.050;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:94,17:111:99:130,0,1205
chrXVI	786420	.	G	A	82.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.986;DP=258;Dels=0.00;FS=2.306;HaplotypeScore=139.8710;MLEAC=1;MLEAF=0.500;MQ=36.04;MQ0=0;MQRankSum=-4.196;QD=0.32;ReadPosRankSum=-4.774;SB=-7.140e+02	GT:AD:DP:GQ:PL	0/1:157,101:258:99:112,0,1274
chrXVI	786444	.	T	C	671.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.002;DP=248;Dels=0.00;FS=0.569;HaplotypeScore=139.2749;MLEAC=1;MLEAF=0.500;MQ=35.71;MQ0=0;MQRankSum=0.193;QD=2.71;ReadPosRankSum=-5.606;SB=-3.470e+02	GT:AD:DP:GQ:PL	0/1:183,63:247:99:701,0,456
chrXVI	786450	.	T	G	535.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;DP=241;Dels=0.00;FS=6.274;HaplotypeScore=128.3028;MLEAC=1;MLEAF=0.500;MQ=35.11;MQ0=0;MQRankSum=-3.253;QD=2.22;ReadPosRankSum=-8.770;SB=-3.180e+02	GT:AD:DP:GQ:PL	0/1:101,62:240:99:565,0,601
chrXVI	786792	.	T	C	1433	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.0453;MLEAC=2;MLEAF=1.00;MQ=45.45;MQ0=0;QD=21.07;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1466,156,0
chrXVI	787292	.	G	A	1527	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=11.8737;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=20.92;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1560,165,0
chrXVI	787485	.	A	G	2341	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.99;MQ0=0;QD=20.36;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,115:115:99:2374,255,0
chrXVI	787542	.	C	T	1779	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.37;MQ0=0;MQRankSum=-1.237;QD=14.82;ReadPosRankSum=1.587;SB=-1.170e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:1812,195,0
chrXVI	787549	.	C	A	1720	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.64;MQ0=0;QD=15.36;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:1753,186,0
chrXVI	787570	.	T	A	77.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=90.2961;MLEAC=2;MLEAF=1.00;MQ=47.06;MQ0=0;MQRankSum=-0.220;QD=0.70;ReadPosRankSum=1.701;SB=-1.453e+03	GT:AD:DP:GQ:PL	1/1:1,109:110:12:110,12,0
chrXVI	788014	.	A	G	1064	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.24;MQ0=0;QD=17.16;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1097,123,0
chrXVI	788015	.	G	A	1102	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.12;MQ0=0;QD=18.07;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1135,123,0
chrXVI	788088	.	A	G	628	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.496;DP=44;Dels=0.00;FS=3.010;HaplotypeScore=4.7229;MLEAC=2;MLEAF=1.00;MQ=57.33;MQ0=0;MQRankSum=-0.866;QD=14.27;ReadPosRankSum=1.654;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:1,43:44:72:661,72,0
chrXVI	788197	.	A	G	1289	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=19.83;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,62:65:99:1322,150,0
chrXVI	788230	.	T	C	1585	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.492;QD=21.71;ReadPosRankSum=1.684;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:1,71:73:99:1618,177,0
chrXVI	788320	.	G	A	1467	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=22.23;SB=-7.340e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1500,159,0
chrXVI	788362	.	C	T	1820	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=7.3862;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=22.20;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1853,201,0
chrXVI	788440	.	C	T	3024	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=7.6512;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=24.00;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,125:126:99:3057,324,0
chrXVI	788617	.	C	A	2265	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.10;SB=-8.480e+02	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2298,252,0
chrXVI	788833	.	G	A	3019	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=5.7295;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=23.22;SB=-1.525e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3052,327,0
chrXVI	789056	.	T	C	1548	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.573;DP=88;Dels=0.00;FS=3.061;HaplotypeScore=5.8509;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=1.135;QD=17.59;ReadPosRankSum=1.692;SB=-1.013e+03	GT:AD:DP:GQ:PL	1/1:1,86:88:99:1581,177,0
chrXVI	789289	.	G	A	862	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=9.4550;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=15.12;SB=-4.540e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:96:895,96,0
chrXVI	789402	.	T	C	1275	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=15.00;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,83:85:99:1308,141,0
chrXVI	789549	.	G	A	1228	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.06;SB=-6.460e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1261,132,0
chrXVI	789596	.	A	G	795	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.652;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=7.9581;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.571;QD=18.49;ReadPosRankSum=1.571;SB=-2.670e+02	GT:AD:DP:GQ:PL	1/1:1,42:43:71:828,71,0
chrXVI	789882	.	T	C	1110	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.18;SB=-6.040e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:99:1143,123,0
chrXVI	790006	.	G	A	3737.01	PASS	AC=2;AF=1.00;AN=2;DP=161;Dels=0.00;FS=0.000;HaplotypeScore=4.9367;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=23.21;SB=-1.693e+03	GT:AD:DP:GQ:PL	1/1:0,160:161:99:3737,411,0
chrXVI	790499	.	C	T	1382	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=5.5665;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=16.85;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1415,156,0
chrXVI	790660	.	A	C	1046	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=18.68;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1079,117,0
chrXVI	790673	.	C	G	971	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.55;MQ0=0;QD=16.46;SB=-6.150e+02	GT:AD:DP:GQ:PL	1/1:0,57:59:99:1004,108,0
chrXVI	790742	.	A	G	1649	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.68;MQ0=0;QD=19.40;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1682,183,0
chrXVI	790766	.	A	C	1537	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=18.52;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1570,174,0
chrXVI	790820	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=19.48;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1124,120,0
chrXVI	790856	.	T	C	1039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;MQRankSum=-1.660;QD=21.20;ReadPosRankSum=1.660;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:1,47:49:99:1072,117,0
chrXVI	790859	.	A	G	983	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=20.91;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,45:47:99:1016,114,0
chrXVI	791229	.	C	G	1602	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0706;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.43;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1635,177,0
chrXVI	791329	.	A	G	1461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=6.917;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.674;QD=24.76;ReadPosRankSum=1.674;SB=-2.760e+02	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1494,162,0
chrXVI	791787	.	G	A	1132	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.58;SB=-6.260e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1165,123,0
chrXVI	792460	.	C	T	1999	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;DP=109;Dels=0.00;FS=4.692;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-1.637;QD=18.34;ReadPosRankSum=1.383;SB=-8.690e+02	GT:AD:DP:GQ:PL	1/1:1,108:109:99:2032,216,0
chrXVI	792647	.	G	A	1090	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=20.19;SB=-2.360e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1123,120,0
chrXVI	793048	.	T	C	1097	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=-0.999;QD=21.10;ReadPosRankSum=1.599;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1130,123,0
chrXVI	793049	.	T	C	1049	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=20.57;SB=-5.030e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1082,117,0
chrXVI	793313	.	A	T	1603	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.01;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1636,183,0
chrXVI	793555	.	T	G	1305	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=1.489;QD=22.89;ReadPosRankSum=0.881;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1338,153,0
chrXVI	794630	.	T	A	3195	PASS	AC=2;AF=1.00;AN=2;DP=134;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=23.84;SB=-1.132e+03	GT:AD:DP:GQ:PL	1/1:0,134:134:99:3228,345,0
chrXVI	795092	.	G	A	1125	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=19.74;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1158,126,0
chrXVI	795093	.	A	G	1074	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=18.84;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1107,126,0
chrXVI	795138	.	A	G	963	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.6075;MLEAC=2;MLEAF=1.00;MQ=51.41;MQ0=0;QD=17.20;SB=-4.870e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:996,108,0
chrXVI	795149	.	T	A	791	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.04;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=16.48;SB=-4.600e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:824,87,0
chrXVI	795157	.	G	A	776	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=5.3710;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=17.64;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,42:43:87:809,87,0
chrXVI	795291	.	G	A	1533	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=21.00;SB=-8.590e+02	GT:AD:DP:GQ:PL	1/1:0,70:73:99:1566,171,0
chrXVI	796824	.	T	C	1345	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=21.35;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1378,150,0
chrXVI	796878	.	A	T	1704	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=3.565;HaplotypeScore=5.0382;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=0.624;QD=22.72;ReadPosRankSum=1.686;SB=-8.890e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1737,186,0
chrXVI	797063	.	T	C	1065	SnpCluster	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.78;MQ0=0;QD=16.14;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1098,123,0
chrXVI	797065	.	C	T	941	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=14.48;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:974,114,0
chrXVI	797066	.	C	T	891	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;QD=13.71;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:924,111,0
chrXVI	797069	.	T	C	934	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;DP=70;Dels=0.00;FS=3.680;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.28;MQ0=0;MQRankSum=-0.742;QD=13.34;ReadPosRankSum=1.683;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:967,117,0
chrXVI	797136	.	C	A	1113	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=16.37;SB=-8.010e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1146,123,0
chrXVI	797247	.	G	A	1441	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1414;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=18.71;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1474,156,0
chrXVI	797516	.	C	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=22.00;SB=-6.570e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1287,138,0
chrXVI	797530	.	T	C	1068	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2778;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=18.74;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1101,126,0
chrXVI	797712	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.48;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1124,117,0
chrXVI	797859	.	A	G	1468	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=22.94;SB=-7.710e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1501,165,0
chrXVI	797962	.	A	G	1788	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=22.63;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1821,204,0
chrXVI	797994	.	G	A	1672	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.5207;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=22.29;SB=-8.650e+02	GT:AD:DP:GQ:PL	1/1:0,71:75:99:1705,180,0
chrXVI	798071	.	C	T	1832	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=22.34;SB=-9.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1865,198,0
chrXVI	798448	.	A	G	1620	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=7.3038;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=22.50;SB=-7.100e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1653,180,0
chrXVI	798490	.	A	C	1622	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=8.0560;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=19.54;SB=-6.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1655,183,0
chrXVI	798639	.	G	A	2208	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=7.1484;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.00;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2241,240,0
chrXVI	798827	.	A	G	1939	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=5.1375;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=19.01;SB=-1.241e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1972,210,0
chrXVI	798911	.	G	A	2915	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=7.7200;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=22.08;SB=-1.417e+03	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2948,312,0
chrXVI	798952	.	T	C	2561	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=124;Dels=0.00;FS=3.691;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-1.564;QD=20.65;ReadPosRankSum=1.704;SB=-1.275e+03	GT:AD:DP:GQ:PL	1/1:1,123:124:99:2594,279,0
chrXVI	801138	.	C	T	2007	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=8.2091;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=23.34;SB=-8.170e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:2040,216,0
chrXVI	802415	.	A	G	915	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=21.28;SB=-5.490e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:99:948,108,0
chrXVI	802797	.	C	A	1151	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=7.4192;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.93;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,53:55:99:1184,126,0
chrXVI	802871	.	C	T	1799	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=4.5450;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.67;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1832,195,0
chrXVI	802959	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.55;SB=-7.240e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1476,168,0
chrXVI	803171	.	T	G	1147	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.579;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;MQRankSum=-0.760;QD=20.12;ReadPosRankSum=1.672;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1180,132,0
chrXVI	803543	.	A	G	1292	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.655;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-0.956;QD=22.28;ReadPosRankSum=1.613;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1325,147,0
chrXVI	803590	.	T	C	1176	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.60;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1209,135,0
chrXVI	804027	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=-0.735;QD=20.47;ReadPosRankSum=0.262;SB=-7.990e+02	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1384,150,0
chrXVI	804145	.	C	T	2703	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.99;MQ0=0;QD=19.45;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,137:139:99:2736,288,0
chrXVI	804249	.	A	T	2588	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.478;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=12.1629;MLEAC=2;MLEAF=1.00;MQ=45.93;MQ0=0;MQRankSum=-0.079;QD=23.53;ReadPosRankSum=1.700;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:1,109:110:99:2621,282,0
chrXVI	804258	.	T	C	2082	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=44.02;MQ0=0;QD=20.82;SB=-7.180e+02	GT:AD:DP:GQ:PL	1/1:0,97:100:99:2115,237,0
chrXVI	804292	.	A	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.6287;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=24.99;SB=-9.720e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2157,231,0
chrXVI	804352	.	C	T	1138	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=49.33;MQ0=0;QD=22.31;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1171,123,0
chrXVI	804410	.	G	A	1293	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.18;MQ0=0;QD=23.94;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1326,144,0
chrXVI	804481	.	T	C	1428	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.97;SB=-1.920e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1461,162,0
chrXVI	810641	.	A	G	1404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.307;DP=69;Dels=0.00;FS=16.300;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;MQRankSum=1.413;QD=20.35;ReadPosRankSum=2.307;SB=-2.190e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1437,153,0
chrXVI	810774	.	T	G	1011	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.39;MQ0=0;QD=19.82;SB=-5.910e+02	GT:AD:DP:GQ:PL	1/1:0,50:51:99:1044,117,0
chrXVI	810785	.	G	A	1332	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=42.83;MQ0=0;QD=21.14;SB=-6.850e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1365,147,0
chrXVI	811565	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=22.00;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1485,162,0
chrXVI	811809	.	C	T	1391	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=23.18;SB=-5.560e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1424,159,0
chrXVI	811842	.	G	A	1717	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=6.4744;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=22.89;SB=-9.650e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1750,186,0
chrXVI	811965	.	A	G	846	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=19.67;SB=-4.360e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:96:879,96,0
chrXVI	812355	.	C	T	1121	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.85;SB=-4.170e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1154,123,0
chrXVI	812649	.	A	C	439	PASS	AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=15.14;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:0,29:29:51:472,51,0
chrXVI	812762	.	T	C	433	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=14.43;SB=-5.401e+01	GT:AD:DP:GQ:PL	1/1:0,29:30:51:466,51,0
chrXVI	812990	.	T	C	344	PASS	AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.93;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,15:15:42:377,42,0
chrXVI	813147	.	T	C	736	PASS	AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=8.0328;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=18.87;SB=-1.900e+02	GT:AD:DP:GQ:PL	1/1:0,39:39:87:769,87,0
chrXVI	813201	.	A	G	1301	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=23.65;SB=-2.680e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1334,144,0
chrXVI	813489	.	T	C	867	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=18.45;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:99:900,99,0
chrXVI	813633	.	G	A	1288	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.6227;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=23.00;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1321,141,0
chrXVI	814111	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=7.368;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=-0.231;QD=16.70;ReadPosRankSum=1.675;SB=-2.770e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1035,111,0
chrXVI	814192	.	T	C	822	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.582;DP=50;Dels=0.00;FS=8.177;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=0.226;QD=16.44;ReadPosRankSum=1.657;SB=-1.330e+02	GT:AD:DP:GQ:PL	1/1:1,45:50:93:855,93,0
chrXVI	814549	.	T	G	871	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.559;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=4.0994;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;MQRankSum=-1.126;QD=21.77;ReadPosRankSum=1.646;SB=-1.320e+02	GT:AD:DP:GQ:PL	1/1:1,39:40:99:904,99,0
chrXVI	814783	.	A	G	1351	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=3.347;HaplotypeScore=4.6774;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;MQRankSum=-0.646;QD=20.16;ReadPosRankSum=1.681;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:1,66:67:99:1384,153,0
chrXVI	814795	.	C	T	1087	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.65;MQ0=0;QD=19.41;SB=-7.520e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1120,120,0
chrXVI	815334	.	C	T	2155	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=23.42;SB=-6.240e+02	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2188,234,0
chrXVI	815624	.	C	T	3918.01	PASS	AC=2;AF=1.00;AN=2;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=9.2464;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=23.75;SB=-2.160e+03	GT:AD:DP:GQ:PL	1/1:0,165:165:99:3918,420,0
chrXVI	815835	.	A	G	1125	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.6262;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.74;SB=-5.590e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1158,126,0
chrXVI	816544	.	T	C	1654	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=22.66;SB=-7.590e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1687,180,0
chrXVI	816745	.	A	G	1930	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.9523;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=22.98;SB=-9.560e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1963,213,0
chrXVI	817039	.	C	T	1736	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=19.95;SB=-8.220e+02	GT:AD:DP:GQ:PL	1/1:0,86:87:99:1769,183,0
chrXVI	818108	.	T	C	1768	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.02;FS=0.000;HaplotypeScore=21.7859;MLEAC=2;MLEAF=1.00;MQ=57.78;MQ0=0;QD=19.64;SB=-8.100e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1801,201,0
chrXVI	818309	.	G	T	1937	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=5.1175;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=22.52;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,85:86:99:1970,207,0
chrXVI	820254	.	T	A	1312	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=24.30;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1345,144,0
chrXVI	821586	.	A	G	609	PASS	AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=16.03;SB=-2.160e+02	GT:AD:DP:GQ:PL	1/1:0,38:38:72:642,72,0
chrXVI	821623	.	T	C	1002	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=17.28;SB=-6.050e+02	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1035,114,0
chrXVI	826128	.	A	C	1472	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=22.65;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1505,162,0
chrXVI	828256	.	T	G	2066	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.89;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2099,231,0
chrXVI	828752	.	T	C	1266	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.42;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1299,141,0
chrXVI	831532	.	C	T	1307	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=16.97;SB=-8.720e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1340,141,0
chrXVI	832034	.	A	C	1420	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=6.7784;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=16.32;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1453,159,0
chrXVI	832082	.	G	C	11.34	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;DP=57;Dels=0.00;FS=62.180;HaplotypeScore=9.7682;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-1.785;QD=0.20;ReadPosRankSum=-2.795;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:44,13:57:41:41,0,410
chrXVI	832084	.	T	C	707	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=8.1908;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=12.40;SB=-4.300e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:84:740,84,0
chrXVI	832610	.	T	C	1846	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=4.9603;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.98;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1879,210,0
chrXVI	832685	.	A	G	1311	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=8.8490;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.316;QD=17.48;ReadPosRankSum=1.686;SB=-8.440e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1344,144,0
chrXVI	832790	.	G	A	2382	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.06;SB=-1.298e+03	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2415,255,0
chrXVI	832863	.	A	G	1888	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=101;Dels=0.00;FS=4.245;HaplotypeScore=8.5700;MLEAC=2;MLEAF=1.00;MQ=54.51;MQ0=0;MQRankSum=-0.978;QD=18.69;ReadPosRankSum=1.698;SB=-8.780e+02	GT:AD:DP:GQ:PL	1/1:1,100:101:99:1921,210,0
chrXVI	833262	.	T	C	2860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.732;DP=144;Dels=0.00;FS=12.043;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=54.12;MQ0=0;MQRankSum=0.306;QD=19.86;ReadPosRankSum=3.688;SB=-1.762e+03	GT:AD:DP:GQ:PL	1/1:5,139:144:99:2893,321,0
chrXVI	833897	.	C	G	2481	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=6.1720;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=20.50;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:2514,279,0
chrXVI	834011	.	G	A	1552	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.9976;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=18.93;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1585,177,0
chrXVI	834110	.	T	C	1445	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;DP=74;Dels=0.00;FS=9.958;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;MQRankSum=-2.494;QD=19.53;ReadPosRankSum=2.850;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:3,71:74:99:1478,165,0
chrXVI	834185	.	A	G	1443	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=18.27;SB=-8.700e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1476,165,0
chrXVI	834249	.	C	T	1431	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.60;SB=-7.580e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1464,156,0
chrXVI	834442	.	G	A	1315	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.1212;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=21.21;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1348,144,0
chrXVI	834513	.	A	G	1473	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;MQRankSum=-0.481;QD=20.46;ReadPosRankSum=1.684;SB=-5.860e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1506,168,0
chrXVI	834517	.	G	A	1512	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.10;MQ0=0;QD=21.60;SB=-6.400e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1545,162,0
chrXVI	834629	.	G	A	1793	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.8633;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=22.70;SB=-7.160e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1826,195,0
chrXVI	834888	.	C	G	1532	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=6.3601;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=21.58;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1565,174,0
chrXVI	835242	.	T	G	1017	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=20.76;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:99:1050,114,0
chrXVI	835306	.	C	T	1946	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.8964;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=17.69;SB=-3.930e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1979,207,0
chrXVI	835334	.	A	T	66.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.434;DP=118;Dels=0.00;FS=6.930;HaplotypeScore=108.5389;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-0.210;QD=0.56;ReadPosRankSum=-4.894;SB=-2.651e+01	GT:AD:DP:GQ:PL	1/1:109,9:118:12:99,12,0
chrXVI	835457	.	A	G	1860	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=5.229;HaplotypeScore=5.2736;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.087;QD=22.96;ReadPosRankSum=1.689;SB=-5.470e+02	GT:AD:DP:GQ:PL	1/1:1,79:81:99:1893,207,0
chrXVI	835494	.	G	T	1327	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=18.43;SB=-3.630e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1360,144,0
chrXVI	835496	.	C	A	1169	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.57;MQ0=0;QD=17.19;SB=-3.600e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1202,135,0
chrXVI	835574	.	A	G	1259	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=18.51;SB=-4.440e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1292,144,0
chrXVI	835682	.	T	G	1329	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=20.77;SB=-4.860e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1362,150,0
chrXVI	835697	.	A	G	1154	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=18.92;SB=-4.430e+02	GT:AD:DP:GQ:PL	1/1:0,59:61:99:1187,129,0
chrXVI	835836	.	C	T	2332	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=7.3453;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=23.56;SB=-1.276e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2365,249,0
chrXVI	836283	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;MQRankSum=1.435;QD=19.60;ReadPosRankSum=1.683;SB=-8.860e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1405,156,0
chrXVI	836997	.	T	C	1945	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=5.3435;MLEAC=2;MLEAF=1.00;MQ=54.35;MQ0=0;MQRankSum=-1.732;QD=20.69;ReadPosRankSum=1.658;SB=-1.133e+03	GT:AD:DP:GQ:PL	1/1:1,92:94:99:1978,219,0
chrXVI	837009	.	C	T	1776	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=20.41;SB=-1.168e+03	GT:AD:DP:GQ:PL	1/1:0,87:87:99:1809,192,0
chrXVI	837051	.	G	A	1388	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=53.56;MQ0=0;QD=16.72;SB=-9.960e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1421,150,0
chrXVI	837072	.	C	T	946	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.85;MQ0=0;QD=12.78;SB=-8.970e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:979,108,0
chrXVI	837416	.	A	C	1821	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.9997;MLEAC=2;MLEAF=1.00;MQ=53.65;MQ0=0;QD=20.69;SB=-5.530e+02	GT:AD:DP:GQ:PL	1/1:0,87:88:99:1854,204,0
chrXVI	837483	.	A	G	1608	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=55.57;MQ0=0;MQRankSum=0.990;QD=22.97;ReadPosRankSum=1.683;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1641,180,0
chrXVI	837622	.	G	A	613	PASS	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.30;MQ0=0;QD=17.03;SB=-2.880e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:69:646,69,0
chrXVI	838043	.	G	A	775	PASS	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=36.88;MQ0=0;QD=17.61;SB=-5.501e+01	GT:AD:DP:GQ:PL	1/1:0,44:44:87:808,87,0
chrXVI	838104	.	T	C	892	filter	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.00;MQ0=5;QD=15.38;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,57:58:99:925,102,0
chrXVI	838274	.	A	G	353	filter	AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.07;MQ0=0;QD=13.07;SB=-7.059e-03	GT:AD:DP:GQ:PL	1/1:0,27:27:42:386,42,0
chrXVI	838362	.	C	T	224.01	filter	AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.95;MQ0=0;QD=18.67;SB=-1.946e-02	GT:AD:DP:GQ:PL	1/1:0,12:12:27:257,27,0
chrXVI	838806	.	G	A	26.77	LowQual;filter	AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.12;MQ0=3;QD=5.35;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:1,4:5:6:58,6,0
chrXVI	838970	.	T	A	557	filter	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=24.22;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,23:23:63:590,63,0
chrXVI	839220	.	T	G	24.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.58;MQ0=0;QD=1.30;SB=-5.777e+01	GT:AD:DP:GQ:PL	1/1:0,19:19:6:56,6,0
chrXVI	839225	.	G	A	23.78	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.05;MQ0=0;QD=1.32;SB=-5.677e+01	GT:AD:DP:GQ:PL	1/1:0,17:18:6:55,6,0
chrXVI	839226	.	T	C	22.79	LowQual;SnpCluster;filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=31.45;MQ0=0;MQRankSum=-0.731;QD=1.20;ReadPosRankSum=1.528;SB=-5.577e+01	GT:AD:DP:GQ:PL	1/1:2,17:19:6:54,6,0
chrXVI	839265	.	A	G	213.01	PASS	AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=9.26;SB=-2.150e+02	GT:AD:DP:GQ:PL	1/1:0,23:23:27:246,27,0
chrXVI	839292	.	A	G	344	PASS	AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.36;MQ0=0;QD=11.47;SB=-2.980e+02	GT:AD:DP:GQ:PL	1/1:0,29:30:42:377,42,0
chrXVI	839313	.	C	T	746	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.63;MQ0=0;QD=17.35;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:779,84,0
chrXVI	839436	.	A	G	1749	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=20.58;SB=-3.070e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1782,198,0
chrXVI	839499	.	T	C	1136	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=3.118;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=43.99;MQ0=0;MQRankSum=-0.380;QD=13.85;ReadPosRankSum=1.690;SB=-2.960e+02	GT:AD:DP:GQ:PL	1/1:1,81:82:99:1169,129,0
chrXVI	840103	.	G	A	2875	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=21.78;SB=-8.190e+02	GT:AD:DP:GQ:PL	1/1:0,131:132:99:2908,309,0
chrXVI	840263	.	T	A	1286	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.78;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1319,138,0
chrXVI	840482	.	C	G	813	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=19.36;SB=-1.650e+02	GT:AD:DP:GQ:PL	1/1:0,41:42:93:846,93,0
chrXVI	841449	.	T	C	1351	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=9.8748;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=18.26;SB=-5.970e+02	GT:AD:DP:GQ:PL	1/1:0,72:74:99:1384,153,0
chrXVI	841702	.	A	G	1201	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=20.36;SB=-5.830e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1234,141,0
chrXVI	841859	.	G	T	937	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=16.16;SB=-5.800e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:970,105,0
chrXVI	841958	.	G	T	1497	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1473;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=17.61;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1530,162,0
chrXVI	842051	.	A	G	1669	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=1.059;QD=23.18;ReadPosRankSum=1.684;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1702,189,0
chrXVI	842084	.	T	C	1234	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=23.73;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1267,144,0
chrXVI	842447	.	T	C	1197	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.0178;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=0;MQRankSum=1.144;QD=22.17;ReadPosRankSum=1.667;SB=-5.460e+02	GT:AD:DP:GQ:PL	1/1:1,52:54:99:1230,135,0
chrXVI	842522	.	A	G	1058	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=19.24;SB=-3.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1091,117,0
chrXVI	842864	.	A	T	1472	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=25.82;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1505,159,0
chrXVI	843391	.	T	C	872	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.2566;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=16.77;SB=-5.950e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:905,102,0
chrXVI	843651	.	C	T	1299	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=19.98;SB=-8.150e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1332,144,0
chrXVI	843861	.	C	T	2328	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.28;SB=-1.050e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2361,246,0
chrXVI	843881	.	T	C	2196	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=22.18;SB=-1.346e+03	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2229,237,0
chrXVI	844001	.	G	A	953	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=49.16;MQ0=0;QD=19.45;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:986,105,0
chrXVI	844011	.	T	C	869	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=21.20;SB=-3.150e+02	GT:AD:DP:GQ:PL	1/1:0,40:41:99:902,102,0
chrXVI	844046	.	T	C	1134	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=18.59;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1167,129,0
chrXVI	844058	.	T	C	1335	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=19.07;SB=-4.020e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1368,150,0
chrXVI	844339	.	A	T	897	filter	AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.08;MQ0=0;QD=20.39;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,44:44:99:930,105,0
chrXVI	844418	.	A	G	587	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.134;DP=39;Dels=0.00;FS=8.195;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=6;MQRankSum=2.385;QD=15.05;ReadPosRankSum=2.084;SB=-6.521e-03	GT:AD:DP:GQ:PL	1/1:10,28:39:66:620,66,0
chrXVI	850463	.	A	C	1456	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.638;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=36.65;MQ0=0;MQRankSum=-0.213;QD=25.54;ReadPosRankSum=1.246;SB=-2.801e+01	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1489,141,0
chrXVI	850487	.	T	G	735	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.14;MQ0=0;MQRankSum=0.217;QD=22.97;ReadPosRankSum=1.625;SB=-8.201e+01	GT:AD:DP:GQ:PL	1/1:1,31:32:84:768,84,0
chrXVI	850488	.	G	A	783	PASS	AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=36.17;MQ0=0;QD=23.73;SB=-8.801e+01	GT:AD:DP:GQ:PL	1/1:0,32:33:87:816,87,0
chrXVI	856558	.	A	T	70.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.307;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=1;MQRankSum=2.219;QD=7.05;ReadPosRankSum=2.219;SB=2.49	GT:AD:DP:GQ:PL	1/1:5,5:10:12:103,12,0
chrXVI	856561	.	G	A	73.51	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.361;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=1;MQRankSum=2.219;QD=7.35;ReadPosRankSum=-2.219;SB=2.49	GT:AD:DP:GQ:PL	1/1:6,4:10:12:106,12,0
chrXVI	856887	.	T	A	60.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;DP=30;Dels=0.00;FS=27.732;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.20;MQ0=0;MQRankSum=1.471;QD=2.00;ReadPosRankSum=3.923;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:23,7:30:72:90,0,72
chrXVI	856890	.	A	C	135.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DP=38;Dels=0.00;FS=19.064;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.86;MQ0=0;MQRankSum=-0.756;QD=3.55;ReadPosRankSum=-3.393;SB=-3.000e+02	GT:AD:DP:GQ:PL	0/1:7,30:38:75:165,0,75
chrXVI	857345	.	T	A	1138	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=17.51;SB=-5.750e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1171,123,0
chrXVI	858788	.	T	C	1689	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=1.363;QD=22.52;ReadPosRankSum=1.640;SB=-9.640e+02	GT:AD:DP:GQ:PL	1/1:1,74:75:99:1722,192,0
chrXVI	859250	.	A	G	1616	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.643;DP=79;Dels=0.00;FS=5.699;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.599;QD=20.46;ReadPosRankSum=1.643;SB=-4.500e+02	GT:AD:DP:GQ:PL	1/1:1,77:79:99:1649,186,0
chrXVI	860149	.	T	A	1124	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.9534;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=22.94;SB=-4.580e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1157,123,0
chrXVI	860207	.	A	G	1288	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=22.60;SB=-6.790e+02	GT:AD:DP:GQ:PL	1/1:0,55:57:99:1321,144,0
chrXVI	860239	.	T	A	1446	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=5.9021;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=22.59;SB=-6.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1479,159,0
chrXVI	860334	.	G	A	1285	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=55.29;MQ0=0;QD=19.18;SB=-7.630e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1318,141,0
chrXVI	860359	.	C	T	850	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=14.91;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:883,99,0
chrXVI	860362	.	A	T	949	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.37;MQ0=0;QD=16.36;SB=-7.480e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:982,105,0
chrXVI	860540	.	A	G	1523	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.0250;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=24.17;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1556,168,0
chrXVI	860595	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=6.4038;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-1.613;QD=19.71;ReadPosRankSum=1.673;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1176,129,0
chrXVI	860752	.	G	C	1308	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=22.17;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1341,150,0
chrXVI	861771	.	A	G	1372	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.13;SB=-7.870e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1405,153,0
chrXVI	863288	.	G	A	1456	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=19.16;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,74:76:99:1489,159,0
chrXVI	863294	.	A	G	1432	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=53.63;MQ0=0;QD=17.90;SB=-7.840e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1465,159,0
chrXVI	863372	.	G	A	1647	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=6.5648;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=18.10;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1680,186,0
chrXVI	863829	.	C	T	1170	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=18.00;SB=-7.780e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1203,129,0
chrXVI	863903	.	A	G	1030	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=20.20;SB=-5.890e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1063,117,0
chrXVI	863975	.	A	G	1241	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.77;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1274,144,0
chrXVI	864016	.	T	C	1084	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.027;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.192;QD=20.07;ReadPosRankSum=-1.219;SB=-6.390e+02	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1117,101,0
chrXVI	864249	.	C	G	1183	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=5.7702;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.08;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,58:62:99:1216,138,0
chrXVI	864283	.	C	T	1063	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=18.65;SB=-7.040e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1096,120,0
chrXVI	864677	.	C	T	961	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=5.9084;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=19.22;SB=-5.390e+02	GT:AD:DP:GQ:PL	1/1:1,48:50:99:994,105,0
chrXVI	864798	.	T	C	970	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=19.40;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1003,108,0
chrXVI	864815	.	T	C	940	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=17.41;SB=-2.470e+02	GT:AD:DP:GQ:PL	1/1:0,53:54:99:973,105,0
chrXVI	864893	.	G	A	1643	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.16;SB=-7.110e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1676,177,0
chrXVI	865226	.	C	T	764	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=16.61;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:797,87,0
chrXVI	865361	.	C	T	1114	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.42;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1147,120,0
chrXVI	865451	.	C	T	1527	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.675;QD=24.63;ReadPosRankSum=0.404;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:1,59:62:99:1560,162,0
chrXVI	865498	.	C	T	1774	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=24.30;SB=-7.060e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1807,189,0
chrXVI	866267	.	C	G	1453	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=4.5972;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.37;SB=-8.620e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1486,162,0
chrXVI	866381	.	T	C	1240	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=22.14;SB=-6.750e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1273,141,0
chrXVI	868093	.	A	G	1551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.842;DP=70;Dels=0.00;FS=9.613;HaplotypeScore=8.7508;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.812;QD=22.16;ReadPosRankSum=2.871;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:3,67:70:99:1584,177,0
chrXVI	868344	.	T	C	976	filter	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.1463;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=15.49;SB=-6.519e-03	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1009,108,0
chrXVI	868671	.	T	C	1129	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.0659;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=23.52;SB=-1.590e+02	GT:AD:DP:GQ:PL	1/1:0,47:48:99:1162,129,0
chrXVI	869017	.	G	A	532	SnpCluster	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=49.06;MQ0=0;QD=14.38;SB=-3.080e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:60:565,60,0
chrXVI	869020	.	A	G	577	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;MQRankSum=-1.459;QD=15.18;ReadPosRankSum=1.641;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:66:610,66,0
chrXVI	869023	.	A	G	533	SnpCluster	AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=14.81;SB=-3.510e+02	GT:AD:DP:GQ:PL	1/1:0,36:36:63:566,63,0
chrXVI	869074	.	A	G	458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-0.222;QD=11.74;ReadPosRankSum=1.644;SB=-3.830e+02	GT:AD:DP:GQ:PL	1/1:1,38:39:54:491,54,0
chrXVI	869167	.	G	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.28;SB=-6.200e+02	GT:AD:DP:GQ:PL	1/1:0,46:47:99:1080,114,0
chrXVI	869242	.	A	G	841	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.155;QD=20.02;ReadPosRankSum=1.650;SB=-4.880e+02	GT:AD:DP:GQ:PL	1/1:1,41:42:99:874,99,0
chrXVI	869386	.	A	G	991	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=4.8961;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=21.54;SB=-3.160e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1024,117,0
chrXVI	870040	.	T	C	2495	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.8079;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=21.89;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,114:114:99:2528,279,0
chrXVI	870043	.	G	A	2558	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.1428;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=22.84;SB=-1.443e+03	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2591,273,0
chrXVI	870274	.	T	C	1973	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.13;SB=-1.127e+03	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2006,222,0
chrXVI	870491	.	C	T	1650	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=20.89;SB=-8.740e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1683,183,0
chrXVI	870525	.	G	C	1302	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=20.03;SB=-7.030e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1335,150,0
chrXVI	870673	.	C	G	2020	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=2.9444;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=20.00;SB=-8.580e+02	GT:AD:DP:GQ:PL	1/1:0,100:101:99:2053,231,0
chrXVI	871044	.	G	A	1515	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=20.75;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1548,171,0
chrXVI	871222	.	G	T	2029	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=23.87;SB=-6.740e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:2062,219,0
chrXVI	871361	.	T	C	2554	PASS	AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.89;MQ0=0;QD=24.09;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2587,288,0
chrXVI	871491	.	A	G	1828	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=22.29;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1861,201,0
chrXVI	871536	.	C	T	2012	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=21.87;SB=-8.830e+02	GT:AD:DP:GQ:PL	1/1:0,90:92:99:2045,222,0
chrXVI	871617	.	A	T	2434	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=56.96;MQ0=0;QD=19.63;SB=-1.330e+03	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2467,261,0
chrXVI	871620	.	C	T	2384	PASS	AC=2;AF=1.00;AN=2;DP=128;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=18.62;SB=-1.281e+03	GT:AD:DP:GQ:PL	1/1:0,127:128:99:2417,258,0
chrXVI	871689	.	A	C	3039	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=6.4974;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=22.18;SB=-1.617e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:3072,342,0
chrXVI	871860	.	T	C	2192	PASS	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=8.0533;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=23.07;SB=-1.196e+03	GT:AD:DP:GQ:PL	1/1:0,92:95:99:2225,243,0
chrXVI	872172	.	G	A	2645	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=4.5538;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=23.41;SB=-1.289e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2678,291,0
chrXVI	872295	.	C	T	1932	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=25.09;SB=-7.950e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1965,210,0
chrXVI	872338	.	T	A	1627	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=21.69;SB=-1.035e+03	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1660,174,0
chrXVI	872660	.	C	T	2327	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=24.24;SB=-1.263e+03	GT:AD:DP:GQ:PL	1/1:0,95:96:99:2360,252,0
chrXVI	872691	.	A	G	2390	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=22.76;SB=-1.273e+03	GT:AD:DP:GQ:PL	1/1:0,100:105:99:2423,270,0
chrXVI	872987	.	G	A	1179	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=18.71;SB=-5.410e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1212,129,0
chrXVI	872997	.	G	A	1059	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2311;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=18.26;SB=-4.230e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1092,117,0
chrXVI	873070	.	T	C	1151	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=21.72;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:1184,132,0
chrXVI	873134	.	T	A	880	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=7.1416;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=17.25;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:96:913,96,0
chrXVI	873246	.	A	G	1795	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=25.28;SB=-7.320e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1828,195,0
chrXVI	873300	.	T	C	1178	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=23.56;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1211,135,0
chrXVI	873342	.	C	A	1210	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.04;MQ0=0;QD=18.62;SB=-6.440e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1243,138,0
chrXVI	873345	.	C	T	1230	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=18.64;SB=-5.670e+02	GT:AD:DP:GQ:PL	1/1:0,65:66:99:1263,138,0
chrXVI	873415	.	A	T	845	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=15.65;SB=-3.900e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:96:878,96,0
chrXVI	873426	.	T	C	900	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=-0.433;QD=16.07;ReadPosRankSum=1.670;SB=-4.960e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:933,102,0
chrXVI	873450	.	A	C	816	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.32;SB=-4.370e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:96:849,96,0
chrXVI	873684	.	T	C	1274	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.0488;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=21.23;SB=-5.570e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1307,150,0
chrXVI	873795	.	T	C	2825	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.616;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=9.4270;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;MQRankSum=0.335;QD=23.54;ReadPosRankSum=1.703;SB=-1.089e+03	GT:AD:DP:GQ:PL	1/1:1,118:120:99:2858,315,0
chrXVI	874146	.	A	C	1766	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;MQRankSum=0.224;QD=20.78;ReadPosRankSum=1.691;SB=-7.050e+02	GT:AD:DP:GQ:PL	1/1:1,84:85:99:1799,195,0
chrXVI	874530	.	C	A	961	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.0311;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=18.13;SB=-5.780e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:994,111,0
chrXVI	874564	.	T	C	1122	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.9178;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=14.20;SB=-8.000e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1155,126,0
chrXVI	874996	.	A	G	1806	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.86;MQ0=0;QD=20.29;SB=-1.085e+03	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1839,204,0
chrXVI	875078	.	T	G	2106	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.259;DP=104;Dels=0.00;FS=10.249;HaplotypeScore=9.2973;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;MQRankSum=-1.207;QD=20.25;ReadPosRankSum=2.402;SB=-7.680e+02	GT:AD:DP:GQ:PL	1/1:2,101:104:99:2139,237,0
chrXVI	875348	.	T	C	1893	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=7.1734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.81;SB=-7.130e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1926,210,0
chrXVI	876278	.	T	A	390	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.57;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:45:423,45,0
chrXVI	876279	.	T	A	380	PASS	AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=18.10;SB=-1.110e+02	GT:AD:DP:GQ:PL	1/1:0,21:21:45:413,45,0
chrXVI	876647	.	T	C	1333	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=20.83;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1366,153,0
chrXVI	876811	.	T	C	1917	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=94;Dels=0.03;FS=3.156;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=0.780;QD=20.39;ReadPosRankSum=1.656;SB=-1.141e+03	GT:AD:DP:GQ:PL	1/1:1,90:91:99:1950,213,0
chrXVI	876853	.	A	G	1590	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=21.49;SB=-5.080e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1623,186,0
chrXVI	876931	.	T	C	773	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=17.18;SB=-5.100e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:90:806,90,0
chrXVI	877294	.	T	C	1338	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=19.39;SB=-8.560e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1371,153,0
chrXVI	877459	.	G	A	1629	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=14.4748;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=16.13;SB=-1.205e+03	GT:AD:DP:GQ:PL	1/1:0,100:101:99:1662,180,0
chrXVI	878300	.	T	C	895	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=4.680;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.732;QD=18.65;ReadPosRankSum=1.659;SB=-4.180e+02	GT:AD:DP:GQ:PL	1/1:1,46:47:99:928,102,0
chrXVI	878600	.	T	A	1290	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=17.92;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1323,150,0
chrXVI	878725	.	T	C	718	PASS	AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=21.12;SB=-2.420e+02	GT:AD:DP:GQ:PL	1/1:0,34:34:84:751,84,0
chrXVI	878986	.	T	G	1119	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.965;DP=56;Dels=0.00;FS=3.039;HaplotypeScore=4.3148;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=0.155;QD=19.98;ReadPosRankSum=2.141;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1152,106,0
chrXVI	879007	.	G	T	1368	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=5.0222;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=23.59;SB=-6.480e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1401,150,0
chrXVI	879511	.	C	T	1052	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=16.97;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1085,117,0
chrXVI	879520	.	G	A	971	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=16.18;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1004,105,0
chrXVI	879742	.	T	C	1922	PASS	AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.9322;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=20.89;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,92:92:99:1955,210,0
chrXVI	879779	.	A	G	1967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.661;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;MQRankSum=1.018;QD=20.28;ReadPosRankSum=1.554;SB=-1.230e+03	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2000,219,0
chrXVI	879792	.	G	A	2333	PASS	AC=2;AF=1.00;AN=2;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=21.80;SB=-1.332e+03	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2366,252,0
chrXVI	880193	.	A	G	3752.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=165;Dels=0.00;FS=0.000;HaplotypeScore=13.5558;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;MQRankSum=-0.739;QD=22.74;ReadPosRankSum=1.711;SB=-1.949e+03	GT:AD:DP:GQ:PL	1/1:1,163:165:99:3752,411,0
chrXVI	880238	.	T	G	2453	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=51.94;MQ0=0;MQRankSum=1.663;QD=24.29;ReadPosRankSum=1.697;SB=-6.310e+02	GT:AD:DP:GQ:PL	1/1:1,99:101:99:2486,273,0
chrXVI	880287	.	G	A	708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=43.0417;MLEAC=2;MLEAF=1.00;MQ=46.39;MQ0=0;MQRankSum=0.654;QD=15.06;ReadPosRankSum=0.808;SB=-4.820e+02	GT:AD:DP:GQ:PL	1/1:1,45:47:78:741,78,0
chrXVI	880381	.	A	G	1143	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.66;MQ0=0;QD=19.05;SB=-2.940e+02	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1176,129,0
chrXVI	880390	.	G	A	1191	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.72;MQ0=0;QD=18.32;SB=-3.740e+02	GT:AD:DP:GQ:PL	1/1:0,64:65:99:1224,129,0
chrXVI	880417	.	G	A	1410	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=20.43;SB=-5.420e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1443,156,0
chrXVI	880461	.	C	T	1728	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=21.60;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1761,186,0
chrXVI	880514	.	A	T	1804	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=21.73;SB=-4.100e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1837,207,0
chrXVI	880533	.	C	A	1759	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=22.27;SB=-3.110e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1792,186,0
chrXVI	880557	.	T	A	1156	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.35;MQ0=0;QD=20.28;SB=-1.980e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1189,129,0
chrXVI	880606	.	G	A	158.06	PASS	AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.57;MQ0=0;QD=4.52;SB=-1.400e+02	GT:AD:DP:GQ:PL	1/1:0,35:35:21:191,21,0
chrXVI	880619	.	C	A	83.51	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.14;MQ0=0;QD=1.78;SB=-1.395e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:12:116,12,0
chrXVI	880628	.	C	T	44.97	filter	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.95;MQ0=0;QD=0.90;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:9:77,9,0
chrXVI	880631	.	G	T	52.97	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.88;MQ0=0;QD=1.04;SB=-1.100e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:9:85,9,0
chrXVI	880641	.	A	C	68.51	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=21.09;MQ0=0;QD=1.12;SB=-1.015e+02	GT:AD:DP:GQ:PL	1/1:0,60:61:12:101,12,0
chrXVI	880820	.	A	G	1765	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.507;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=7.2494;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;MQRankSum=-1.147;QD=22.63;ReadPosRankSum=0.967;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:1,76:78:99:1798,175,0
chrXVI	880878	.	T	C	2039	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.617;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;MQRankSum=-1.232;QD=22.66;ReadPosRankSum=1.694;SB=-2.840e+02	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2072,228,0
chrXVI	880901	.	T	C	2011	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.70;MQ0=0;MQRankSum=1.049;QD=19.34;ReadPosRankSum=2.932;SB=-2.620e+02	GT:AD:DP:GQ:PL	1/1:3,100:104:99:2044,225,0
chrXVI	880998	.	G	C	4797.01	PASS	AC=2;AF=1.00;AN=2;DP=214;Dels=0.00;FS=0.000;HaplotypeScore=5.8764;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=22.42;SB=-1.052e+03	GT:AD:DP:GQ:PL	1/1:0,213:214:99:4797,528,0
chrXVI	881280	.	A	T	4434.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.443;DP=209;Dels=0.00;FS=0.000;HaplotypeScore=11.1140;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;MQRankSum=1.562;QD=21.22;ReadPosRankSum=1.681;SB=-2.477e+03	GT:AD:DP:GQ:PL	1/1:1,208:209:99:4434,480,0
chrXVI	881444	.	A	G	2523	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.59;MQ0=0;QD=19.87;SB=-1.272e+03	GT:AD:DP:GQ:PL	1/1:0,127:127:99:2556,288,0
chrXVI	881446	.	A	C	2616	PASS	AC=2;AF=1.00;AN=2;DP=129;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.73;MQ0=0;QD=20.28;SB=-1.267e+03	GT:AD:DP:GQ:PL	1/1:0,129:129:99:2649,291,0
chrXVI	881459	.	C	T	2705	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=2.4607;MLEAC=2;MLEAF=1.00;MQ=51.20;MQ0=0;QD=19.74;SB=-1.185e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2738,291,0
chrXVI	881462	.	T	C	2632	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.384;DP=150;Dels=0.00;FS=9.369;HaplotypeScore=4.8268;MLEAC=2;MLEAF=1.00;MQ=51.84;MQ0=0;MQRankSum=0.272;QD=17.55;ReadPosRankSum=2.334;SB=-1.283e+03	GT:AD:DP:GQ:PL	1/1:2,147:150:99:2665,303,0
chrXVI	881669	.	G	A	2986	PASS	AC=2;AF=1.00;AN=2;DP=153;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=19.52;SB=-1.640e+03	GT:AD:DP:GQ:PL	1/1:0,151:153:99:3019,333,0
chrXVI	881753	.	C	T	2708	PASS	AC=2;AF=1.00;AN=2;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=3.2327;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=22.95;SB=-1.476e+03	GT:AD:DP:GQ:PL	1/1:0,118:118:99:2741,291,0
chrXVI	881784	.	G	A	1887	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=53.82;MQ0=0;QD=20.74;SB=-1.083e+03	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1920,210,0
chrXVI	881834	.	C	A	2085	PASS	AC=2;AF=1.00;AN=2;DP=117;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=17.82;SB=-1.560e+03	GT:AD:DP:GQ:PL	1/1:0,116:117:99:2118,231,0
chrXVI	881837	.	C	A	2032	PASS	AC=2;AF=1.00;AN=2;DP=116;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=17.52;SB=-1.549e+03	GT:AD:DP:GQ:PL	1/1:0,115:116:99:2065,219,0
chrXVI	881984	.	G	A	2913	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=11.0511;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=21.42;SB=-1.623e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:2946,315,0
chrXVI	882103	.	T	A	1973	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=20.55;SB=-9.480e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2006,219,0
chrXVI	882186	.	T	A	2509	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.697;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=6.5074;MLEAC=2;MLEAF=1.00;MQ=46.74;MQ0=0;MQRankSum=0.208;QD=24.84;ReadPosRankSum=1.697;SB=-1.182e+03	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2542,270,0
chrXVI	882225	.	A	G	2435	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=4.3878;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=22.34;SB=-1.384e+03	GT:AD:DP:GQ:PL	1/1:0,108:109:99:2468,276,0
chrXVI	882250	.	A	T	1989	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=3.2158;MLEAC=2;MLEAF=1.00;MQ=45.92;MQ0=0;QD=19.69;SB=-1.003e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2022,213,0
chrXVI	882292	.	A	C	2747	PASS	AC=2;AF=1.00;AN=2;DP=125;Dels=0.02;FS=0.000;HaplotypeScore=9.7425;MLEAC=2;MLEAF=1.00;MQ=51.93;MQ0=0;QD=21.98;SB=-1.462e+03	GT:AD:DP:GQ:PL	1/1:0,123:123:99:2780,306,0
chrXVI	882337	.	C	A	3273.01	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=5.6212;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=23.55;SB=-1.598e+03	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3273,351,0
chrXVI	882493	.	A	G	1675	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.385;DP=76;Dels=0.00;FS=6.555;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;MQRankSum=-0.438;QD=22.04;ReadPosRankSum=2.385;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:2,74:76:99:1708,192,0
chrXVI	882509	.	T	A	1396	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.64;MQ0=0;QD=22.52;SB=-8.380e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1429,153,0
chrXVI	882555	.	T	C	1277	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=32.52;MQ0=0;QD=16.16;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1310,147,0
chrXVI	882567	.	A	G	1115	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.688;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=30.53;MQ0=0;MQRankSum=-1.732;QD=14.11;ReadPosRankSum=1.688;SB=-3.330e+02	GT:AD:DP:GQ:PL	1/1:1,78:79:99:1148,126,0
chrXVI	882576	.	C	T	1088	SnpCluster	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.42;MQ0=0;QD=13.11;SB=-3.560e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1121,120,0
chrXVI	882583	.	T	C	1153	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=92;Dels=0.00;FS=6.628;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;MQRankSum=1.469;QD=12.53;ReadPosRankSum=1.694;SB=-4.460e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:1186,132,0
chrXVI	882586	.	C	G	1185	SnpCluster	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=12.34;SB=-4.790e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:1218,135,0
chrXVI	882590	.	C	T	1266	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=13.33;SB=-5.350e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1299,141,0
chrXVI	882596	.	A	G	1202	SnpCluster	AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.98;MQ0=0;QD=12.65;SB=-5.160e+02	GT:AD:DP:GQ:PL	1/1:0,95:95:99:1235,141,0
chrXVI	882608	.	T	C	1074	SnpCluster	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=12.49;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1107,129,0
chrXVI	882609	.	C	G	1099	SnpCluster	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.99;MQ0=0;QD=12.78;SB=-5.060e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1132,129,0
chrXVI	882613	.	G	C	1035	SnpCluster	AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.44;MQ0=0;QD=10.67;SB=-5.630e+02	GT:AD:DP:GQ:PL	1/1:0,94:97:99:1068,120,0
chrXVI	882632	.	A	C	1215	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.834;DP=103;Dels=0.00;FS=5.872;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.94;MQ0=0;MQRankSum=0.265;QD=11.80;ReadPosRankSum=2.912;SB=-1.101e+03	GT:AD:DP:GQ:PL	1/1:3,100:103:99:1248,138,0
chrXVI	882654	.	C	T	1645	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.93;MQ0=0;QD=14.95;SB=-1.410e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1678,183,0
chrXVI	882679	.	T	C	1856	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=2.2312;MLEAC=2;MLEAF=1.00;MQ=49.80;MQ0=0;QD=18.20;SB=-1.357e+03	GT:AD:DP:GQ:PL	1/1:0,102:102:99:1889,210,0
chrXVI	882721	.	T	C	1975	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.312;DP=108;Dels=0.00;FS=7.198;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;MQRankSum=0.081;QD=18.29;ReadPosRankSum=2.381;SB=-1.164e+03	GT:AD:DP:GQ:PL	1/1:2,105:108:99:2008,219,0
chrXVI	882746	.	C	T	1844	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=17.56;SB=-1.215e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1877,204,0
chrXVI	882768	.	G	T	1638	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.02;FS=0.000;HaplotypeScore=2.9197;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;QD=14.89;SB=-1.029e+03	GT:AD:DP:GQ:PL	1/1:0,108:108:99:1671,183,0
chrXVI	882787	.	G	A	1631	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.88;MQ0=0;QD=16.47;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1664,177,0
chrXVI	882893	.	C	T	702	PASS	AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=44.72;MQ0=0;QD=17.55;SB=-4.760e+02	GT:AD:DP:GQ:PL	1/1:0,40:40:81:735,81,0
chrXVI	882903	.	T	G	666	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.829;DP=41;Dels=0.00;FS=10.414;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=40.77;MQ0=0;MQRankSum=-1.477;QD=16.24;ReadPosRankSum=2.728;SB=-4.030e+02	GT:AD:DP:GQ:PL	1/1:3,38:41:81:699,81,0
chrXVI	882906	.	T	C	664	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=40.47;MQ0=0;QD=14.76;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:81:697,81,0
chrXVI	882932	.	T	A	973	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=17.37;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1006,111,0
chrXVI	882949	.	G	A	940	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=40.04;MQ0=0;QD=17.09;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:973,108,0
chrXVI	883117	.	G	A	2183	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=2.5243;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=20.79;SB=-1.049e+03	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2216,240,0
chrXVI	883313	.	C	T	1542	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=4.1158;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=20.03;SB=-8.460e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1575,168,0
chrXVI	883526	.	C	G	610	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=13.56;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:0,42:45:72:643,72,0
chrXVI	883797	.	G	A	1815	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=26.69;SB=-1.130e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1848,195,0
chrXVI	883981	.	G	A	612	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=23.54;SB=-3.360e+02	GT:AD:DP:GQ:PL	1/1:0,26:26:69:645,69,0
chrXVI	884263	.	G	A	1232	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=23.69;SB=-3.340e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1265,135,0
chrXVI	884655	.	T	G	1121	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4932;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.38;SB=-6.870e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1154,129,0
chrXVI	884709	.	C	T	759	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=3.1435;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=17.65;SB=-5.290e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:84:792,84,0
chrXVI	884724	.	G	A	658	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.59;MQ0=0;QD=15.30;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:75:691,75,0
chrXVI	884742	.	A	G	511	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.365;DP=38;Dels=0.00;FS=3.757;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.54;MQ0=0;MQRankSum=0.274;QD=13.45;ReadPosRankSum=-0.091;SB=-2.510e+02	GT:AD:DP:GQ:PL	1/1:1,37:38:43:544,43,0
chrXVI	884832	.	G	A	995	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=24.27;SB=-1.360e+02	GT:AD:DP:GQ:PL	1/1:0,39:41:99:1028,111,0
chrXVI	884895	.	A	G	857	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=23.16;SB=-2.720e+02	GT:AD:DP:GQ:PL	1/1:0,36:37:96:890,96,0
chrXVI	884970	.	A	G	922	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=22.49;SB=-4.110e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:99:955,108,0
chrXVI	885160	.	C	T	1915	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=18.24;SB=-9.200e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:1948,207,0
chrXVI	885162	.	C	A	1877	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.91;MQ0=0;QD=18.05;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1910,210,0
chrXVI	885178	.	A	G	1618	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;DP=102;Dels=0.00;FS=11.034;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=48.54;MQ0=0;MQRankSum=-0.471;QD=15.86;ReadPosRankSum=2.353;SB=-6.670e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:1651,183,0
chrXVI	885190	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.29;MQ0=0;QD=15.86;SB=-6.110e+02	GT:AD:DP:GQ:PL	1/1:0,97:99:99:1603,174,0
chrXVI	885270	.	G	A	1633	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.37;SB=-7.790e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1666,189,0
chrXVI	885390	.	A	G	2009	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.79;MQ0=0;QD=24.80;SB=-1.002e+03	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2042,225,0
chrXVI	885455	.	A	C	1701	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=20.74;SB=-5.500e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1734,192,0
chrXVI	885753	.	G	C	1444	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=19.51;SB=-8.880e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1477,165,0
chrXVI	885762	.	T	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=18.54;SB=-8.910e+02	GT:AD:DP:GQ:PL	1/1:0,74:74:99:1405,150,0
chrXVI	885768	.	G	A	1302	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=17.84;SB=-8.510e+02	GT:AD:DP:GQ:PL	1/1:0,71:73:99:1335,141,0
chrXVI	885822	.	G	A	1012	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=17.45;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1045,114,0
chrXVI	885828	.	A	G	1157	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.369;DP=62;Dels=0.00;FS=6.850;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.37;MQ0=0;MQRankSum=0.790;QD=18.66;ReadPosRankSum=2.369;SB=-7.210e+02	GT:AD:DP:GQ:PL	1/1:2,59:62:99:1190,132,0
chrXVI	885864	.	G	A	1619	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=2.5640;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=21.59;SB=-9.220e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1652,183,0
chrXVI	885942	.	T	C	1809	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.626;DP=98;Dels=0.00;FS=5.141;HaplotypeScore=7.6240;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;MQRankSum=-0.707;QD=18.46;ReadPosRankSum=1.697;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,97:98:99:1842,201,0
chrXVI	885979	.	T	A	1832	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=6.3874;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=21.55;SB=-9.970e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1865,204,0
chrXVI	886125	.	A	C	1042	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=51.22;MQ0=0;QD=16.03;SB=-4.840e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1075,123,0
chrXVI	886141	.	G	A	900	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=49.38;MQ0=0;QD=15.79;SB=-4.520e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:933,99,0
chrXVI	886188	.	A	G	1107	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=19.09;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1140,126,0
chrXVI	886611	.	A	G	575	PASS	AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=20.54;SB=-3.610e+02	GT:AD:DP:GQ:PL	1/1:0,27:28:66:608,66,0
chrXVI	886776	.	A	G	1229	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=18.62;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1262,135,0
chrXVI	886812	.	C	T	934	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=15.31;SB=-5.640e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:967,105,0
chrXVI	887016	.	G	A	1378	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=22.59;SB=-7.080e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1411,150,0
chrXVI	887070	.	T	C	832	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=4.3024;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=19.81;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:96:865,96,0
chrXVI	887343	.	G	A	1129	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.14;SB=-5.880e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1162,129,0
chrXVI	887394	.	G	A	1095	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=18.56;SB=-5.730e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1128,120,0
chrXVI	887495	.	G	A	1049	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=21.85;SB=-6.270e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1082,114,0
chrXVI	888032	.	G	T	1658	PASS	AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=23.35;SB=-5.920e+02	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1691,183,0
chrXVI	888091	.	G	A	1079	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=8.6988;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=16.10;SB=-7.310e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1112,126,0
chrXVI	888159	.	C	G	1138	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=23.22;SB=-4.090e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1171,129,0
chrXVI	888536	.	G	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2601;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=20.25;SB=-6.210e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1268,135,0
chrXVI	888547	.	A	G	1137	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.73;MQ0=0;QD=19.60;SB=-6.860e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1170,129,0
chrXVI	888800	.	C	T	1400	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9667;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=21.87;SB=-7.620e+02	GT:AD:DP:GQ:PL	1/1:0,63:64:99:1433,153,0
chrXVI	888868	.	A	T	1062	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=53;Dels=0.00;FS=3.181;HaplotypeScore=4.9763;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;MQRankSum=-0.133;QD=20.04;ReadPosRankSum=1.666;SB=-6.100e+02	GT:AD:DP:GQ:PL	1/1:1,51:53:99:1095,120,0
chrXVI	888908	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=19.48;SB=-7.260e+02	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1221,135,0
chrXVI	888917	.	A	G	1019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;MQRankSum=-0.119;QD=17.57;ReadPosRankSum=1.613;SB=-7.540e+02	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1052,117,0
chrXVI	889084	.	A	C	1243	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=58;Dels=0.00;FS=4.616;HaplotypeScore=3.8198;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;MQRankSum=-1.102;QD=21.43;ReadPosRankSum=1.669;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:1,55:58:99:1276,141,0
chrXVI	889176	.	C	T	836	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=54.20;MQ0=0;QD=16.72;SB=-6.520e+02	GT:AD:DP:GQ:PL	1/1:0,48:50:93:869,93,0
chrXVI	889177	.	A	C	774	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=15.80;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,48:49:90:807,90,0
chrXVI	889273	.	T	C	1154	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=4.1141;MLEAC=2;MLEAF=1.00;MQ=54.62;MQ0=0;QD=19.23;SB=-7.750e+02	GT:AD:DP:GQ:PL	1/1:0,59:60:99:1187,132,0
chrXVI	889287	.	T	C	1127	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=3.5696;MLEAC=2;MLEAF=1.00;MQ=53.99;MQ0=0;QD=19.43;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,57:58:99:1160,129,0
chrXVI	889543	.	T	C	1417	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.627;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;MQRankSum=-1.312;QD=21.15;ReadPosRankSum=1.680;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,65:67:99:1450,162,0
chrXVI	889819	.	T	C	1325	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.4630;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=21.37;SB=-7.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1358,147,0
chrXVI	889903	.	C	T	1595	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=19.94;SB=-9.270e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1628,171,0
chrXVI	889906	.	A	G	1664	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=20.54;SB=-9.450e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1697,186,0
chrXVI	890080	.	C	T	2579	PASS	AC=2;AF=1.00;AN=2;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=11.0303;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=18.55;SB=-1.363e+03	GT:AD:DP:GQ:PL	1/1:0,137:139:99:2612,282,0
chrXVI	890346	.	T	A	2048	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.516;DP=114;Dels=0.00;FS=4.364;HaplotypeScore=8.7690;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;MQRankSum=-1.516;QD=17.96;ReadPosRankSum=1.639;SB=-8.980e+02	GT:AD:DP:GQ:PL	1/1:1,113:114:99:2081,225,0
chrXVI	890467	.	G	A	1666	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.21;SB=-8.370e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1699,180,0
chrXVI	890560	.	A	C	1317	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.6982;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=20.90;SB=-7.430e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1350,150,0
chrXVI	890563	.	T	C	1290	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.4321;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=19.85;SB=-7.400e+02	GT:AD:DP:GQ:PL	1/1:0,63:65:99:1323,144,0
chrXVI	890693	.	T	G	2008	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.933;DP=106;Dels=0.00;FS=2.599;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;MQRankSum=-0.291;QD=18.94;ReadPosRankSum=2.797;SB=-9.000e+02	GT:AD:DP:GQ:PL	1/1:3,101:106:99:2041,222,0
chrXVI	890698	.	A	G	2096	PASS	AC=2;AF=1.00;AN=2;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=4.8375;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=19.41;SB=-9.180e+02	GT:AD:DP:GQ:PL	1/1:0,106:108:99:2129,231,0
chrXVI	891130	.	A	C	1704	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=5.3425;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=21.04;SB=-1.039e+03	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1737,189,0
chrXVI	891194	.	A	G	1272	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=19.27;SB=-7.350e+02	GT:AD:DP:GQ:PL	1/1:0,64:66:99:1305,141,0
chrXVI	891335	.	A	G	1428	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=3.3927;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;MQRankSum=1.115;QD=19.30;ReadPosRankSum=1.685;SB=-6.930e+02	GT:AD:DP:GQ:PL	1/1:1,72:74:99:1461,162,0
chrXVI	891344	.	T	C	1394	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=3.507;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;MQRankSum=-0.140;QD=18.84;ReadPosRankSum=1.685;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,73:74:99:1427,156,0
chrXVI	891421	.	A	G	1817	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.695;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;MQRankSum=1.437;QD=19.33;ReadPosRankSum=1.622;SB=-1.072e+03	GT:AD:DP:GQ:PL	1/1:1,93:94:99:1850,204,0
chrXVI	891466	.	C	T	1319	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.3594;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=15.89;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,82:83:99:1352,150,0
chrXVI	891619	.	A	G	2019	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.656;DP=94;Dels=0.00;FS=4.405;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;MQRankSum=0.971;QD=21.48;ReadPosRankSum=1.694;SB=-8.350e+02	GT:AD:DP:GQ:PL	1/1:1,90:94:99:2052,225,0
chrXVI	891701	.	G	A	2360	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=22.48;SB=-8.530e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2393,255,0
chrXVI	892106	.	G	A	4289.01	PASS	AC=2;AF=1.00;AN=2;DP=182;Dels=0.00;FS=0.000;HaplotypeScore=13.4735;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=23.57;SB=-1.749e+03	GT:AD:DP:GQ:PL	1/1:0,180:182:99:4289,459,0
chrXVI	892211	.	A	C	2194	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.6661;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=21.94;SB=-1.271e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2227,246,0
chrXVI	892352	.	T	A	1845	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=8.1495;MLEAC=2;MLEAF=1.00;MQ=56.24;MQ0=0;QD=22.50;SB=-5.990e+02	GT:AD:DP:GQ:PL	1/1:0,82:82:99:1878,204,0
chrXVI	892406	.	C	T	1555	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.87;MQ0=0;QD=22.87;SB=-5.650e+02	GT:AD:DP:GQ:PL	1/1:0,67:68:99:1588,168,0
chrXVI	892424	.	G	A	1543	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.55;MQ0=0;QD=20.30;SB=-6.370e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1576,165,0
chrXVI	892709	.	T	A	1458	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.192;DP=69;Dels=0.00;FS=2.579;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.203;QD=21.13;ReadPosRankSum=2.376;SB=-5.230e+02	GT:AD:DP:GQ:PL	1/1:2,67:69:99:1491,162,0
chrXVI	892994	.	C	T	1631	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=21.46;SB=-9.550e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1664,180,0
chrXVI	893092	.	G	A	2373	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=110;Dels=0.00;FS=3.134;HaplotypeScore=8.3818;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;MQRankSum=0.210;QD=21.57;ReadPosRankSum=1.603;SB=-1.389e+03	GT:AD:DP:GQ:PL	1/1:1,108:110:99:2406,255,0
chrXVI	893447	.	C	G	2028	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=18.7068;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=18.27;SB=-1.274e+03	GT:AD:DP:GQ:PL	1/1:0,103:111:99:2061,231,0
chrXVI	893672	.	T	C	1165	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=18.49;SB=-3.880e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1198,132,0
chrXVI	893806	.	T	G	1828	PASS	AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=6.4928;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;QD=19.66;SB=-8.670e+02	GT:AD:DP:GQ:PL	1/1:0,92:93:99:1861,207,0
chrXVI	893821	.	C	T	1700	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.7183;MLEAC=2;MLEAF=1.00;MQ=46.53;MQ0=0;QD=21.25;SB=-7.800e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1733,186,0
chrXVI	893822	.	C	T	1696	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.7183;MLEAC=2;MLEAF=1.00;MQ=46.71;MQ0=0;QD=21.47;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:0,79:79:99:1729,186,0
chrXVI	893913	.	C	T	733	PASS	AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.68;MQ0=0;QD=17.88;SB=-3.710e+02	GT:AD:DP:GQ:PL	1/1:0,41:41:81:766,81,0
chrXVI	893914	.	T	C	698	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=42;Dels=0.00;FS=4.667;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=0;MQRankSum=-1.479;QD=16.62;ReadPosRankSum=1.648;SB=-3.620e+02	GT:AD:DP:GQ:PL	1/1:1,40:42:81:731,81,0
chrXVI	894005	.	T	C	1409	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=23.88;SB=-4.920e+02	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1442,156,0
chrXVI	894042	.	G	T	1281	PASS	AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.3239;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.71;SB=-6.140e+02	GT:AD:DP:GQ:PL	1/1:0,58:59:99:1314,141,0
chrXVI	894150	.	C	T	1247	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=16.41;SB=-9.300e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1280,135,0
chrXVI	894151	.	C	T	1252	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.01;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;QD=16.05;SB=-9.320e+02	GT:AD:DP:GQ:PL	1/1:0,75:77:99:1285,135,0
chrXVI	894337	.	T	G	2017	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=2.3893;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.30;SB=-1.066e+03	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2050,228,0
chrXVI	894511	.	T	C	1481	PASS	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=22.10;SB=-7.860e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1514,168,0
chrXVI	894844	.	T	A	2047	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=7.3028;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=23.00;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2080,222,0
chrXVI	895022	.	C	G	1576	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=4.1480;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=19.22;SB=-7.760e+02	GT:AD:DP:GQ:PL	1/1:0,81:82:99:1609,183,0
chrXVI	895084	.	C	T	2249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.540;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=7.8990;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;MQRankSum=0.898;QD=20.82;ReadPosRankSum=1.476;SB=-1.399e+03	GT:AD:DP:GQ:PL	1/1:1,107:108:99:2282,243,0
chrXVI	895354	.	A	G	1482	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=4.327;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.666;QD=22.80;ReadPosRankSum=1.679;SB=-6.320e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1515,168,0
chrXVI	895393	.	A	G	1725	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.687;DP=77;Dels=0.00;FS=3.367;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.641;QD=22.40;ReadPosRankSum=1.687;SB=-9.010e+02	GT:AD:DP:GQ:PL	1/1:1,75:77:99:1758,192,0
chrXVI	895642	.	T	C	2551	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.577;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.897;QD=22.78;ReadPosRankSum=1.701;SB=-1.082e+03	GT:AD:DP:GQ:PL	1/1:1,111:112:99:2584,282,0
chrXVI	895702	.	C	T	2236	PASS	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=22.14;SB=-1.014e+03	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2269,243,0
chrXVI	895738	.	C	T	2107	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=7.3243;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=21.07;SB=-1.222e+03	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2140,231,0
chrXVI	895996	.	A	G	2905	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=125;Dels=0.00;FS=3.859;HaplotypeScore=11.9082;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=-0.251;QD=23.24;ReadPosRankSum=1.704;SB=-1.244e+03	GT:AD:DP:GQ:PL	1/1:1,123:125:99:2938,321,0
chrXVI	896116	.	C	T	3273.01	PASS	AC=2;AF=1.00;AN=2;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=14.5939;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.73;SB=-1.450e+03	GT:AD:DP:GQ:PL	1/1:0,141:144:99:3273,351,0
chrXVI	896257	.	G	A	1923	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=7.9661;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=17.48;SB=-7.510e+02	GT:AD:DP:GQ:PL	1/1:0,110:110:99:1956,222,0
chrXVI	896267	.	A	G	1697	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=3.2340;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=17.14;SB=-7.610e+02	GT:AD:DP:GQ:PL	1/1:0,99:99:99:1730,195,0
chrXVI	896434	.	G	A	2737	PASS	AC=2;AF=1.00;AN=2;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=22.25;SB=-1.612e+03	GT:AD:DP:GQ:PL	1/1:0,122:123:99:2770,303,0
chrXVI	896467	.	C	T	2333	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.83;SB=-1.081e+03	GT:AD:DP:GQ:PL	1/1:0,110:112:99:2366,258,0
chrXVI	896539	.	T	C	1686	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=7.8067;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=20.81;SB=-9.080e+02	GT:AD:DP:GQ:PL	1/1:0,80:81:99:1719,189,0
chrXVI	896575	.	A	G	1952	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.226;DP=89;Dels=0.00;FS=8.340;HaplotypeScore=6.9774;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;MQRankSum=-0.882;QD=21.93;ReadPosRankSum=1.638;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:2,86:89:99:1985,219,0
chrXVI	896727	.	G	A	2939	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.0434;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=23.70;SB=-9.880e+02	GT:AD:DP:GQ:PL	1/1:0,124:124:99:2972,312,0
chrXVI	896834	.	A	G	2022	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.693;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=54.22;MQ0=0;MQRankSum=-0.630;QD=22.98;ReadPosRankSum=1.535;SB=-9.400e+02	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2055,234,0
chrXVI	896848	.	C	T	1498	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.287;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;MQRankSum=-0.099;QD=20.81;ReadPosRankSum=0.594;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:1,69:72:99:1531,150,0
chrXVI	896854	.	G	A	1538	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.40;MQ0=0;QD=22.62;SB=-6.880e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1571,165,0
chrXVI	897132	.	A	G	527	PASS	AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=20.27;SB=-5.101e+01	GT:AD:DP:GQ:PL	1/1:0,26:26:63:560,63,0
chrXVI	897538	.	T	C	1439	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.48;SB=-5.260e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1472,165,0
chrXVI	897658	.	G	T	1566	PASS	AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.21;SB=-5.120e+02	GT:AD:DP:GQ:PL	1/1:0,86:86:99:1599,174,0
chrXVI	897742	.	T	C	1488	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;MQRankSum=-1.251;QD=20.67;ReadPosRankSum=1.684;SB=-7.550e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1521,171,0
chrXVI	898021	.	A	G	2089	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=8.6755;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.21;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,85:90:99:2122,234,0
chrXVI	898057	.	A	C	1901	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.646;DP=81;Dels=0.00;FS=4.717;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;MQRankSum=-0.433;QD=23.47;ReadPosRankSum=1.689;SB=-6.820e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1934,216,0
chrXVI	898123	.	A	G	1644	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;MQRankSum=0.889;QD=20.81;ReadPosRankSum=2.294;SB=-5.840e+02	GT:AD:DP:GQ:PL	1/1:2,77:79:99:1677,186,0
chrXVI	898150	.	C	G	1865	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=4.6053;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=20.72;SB=-5.000e+02	GT:AD:DP:GQ:PL	1/1:0,88:90:99:1898,207,0
chrXVI	898411	.	C	T	1851	PASS	AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=6.6971;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=19.69;SB=-1.006e+03	GT:AD:DP:GQ:PL	1/1:0,93:94:99:1884,201,0
chrXVI	898573	.	A	T	1360	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=24.29;SB=-5.810e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1393,150,0
chrXVI	898897	.	C	T	1726	PASS	AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=21.85;SB=-7.740e+02	GT:AD:DP:GQ:PL	1/1:0,78:79:99:1759,186,0
chrXVI	899569	.	C	G	976	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=18.77;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1009,114,0
chrXVI	899602	.	A	G	987	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=5.0435;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=17.32;SB=-4.940e+02	GT:AD:DP:GQ:PL	1/1:0,56:57:99:1020,111,0
chrXVI	899969	.	G	T	1553	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=5.9035;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=22.19;SB=-4.990e+02	GT:AD:DP:GQ:PL	1/1:1,69:70:99:1586,168,0
chrXVI	900008	.	G	A	1499	PASS	AC=2;AF=1.00;AN=2;DP=82;Dels=0.01;FS=0.000;HaplotypeScore=7.1958;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=18.28;SB=-8.070e+02	GT:AD:DP:GQ:PL	1/1:0,78:81:99:1532,165,0
chrXVI	900042	.	T	C	1763	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=8.0063;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.619;QD=20.99;ReadPosRankSum=1.691;SB=-8.420e+02	GT:AD:DP:GQ:PL	1/1:1,83:84:99:1796,195,0
chrXVI	900148	.	C	A	2705	PASS	AC=2;AF=1.00;AN=2;DP=130;Dels=0.00;FS=0.000;HaplotypeScore=10.2529;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=20.81;SB=-1.250e+03	GT:AD:DP:GQ:PL	1/1:0,130:130:99:2738,294,0
chrXVI	900472	.	C	T	1514	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=17.01;SB=-5.720e+02	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1547,165,0
chrXVI	901709	.	C	T	1095	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=8.7535;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.55;SB=-6.030e+02	GT:AD:DP:GQ:PL	1/1:0,55:56:99:1128,126,0
chrXVI	902643	.	T	C	1400	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=69;Dels=0.00;FS=4.239;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;MQRankSum=0.025;QD=20.29;ReadPosRankSum=1.682;SB=-6.160e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1433,159,0
chrXVI	902931	.	T	C	1196	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=6.1858;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=-0.726;QD=18.98;ReadPosRankSum=1.676;SB=-6.890e+02	GT:AD:DP:GQ:PL	1/1:1,61:63:99:1229,138,0
chrXVI	902997	.	A	G	1367	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=5.3611;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=21.03;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1400,153,0
chrXVI	903111	.	T	A	1596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=87;Dels=0.00;FS=3.663;HaplotypeScore=4.2794;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;MQRankSum=-0.081;QD=18.34;ReadPosRankSum=1.652;SB=-9.800e+02	GT:AD:DP:GQ:PL	1/1:1,86:87:99:1629,174,0
chrXVI	903117	.	C	T	1536	PASS	AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=50.81;MQ0=0;QD=18.29;SB=-1.008e+03	GT:AD:DP:GQ:PL	1/1:0,84:84:99:1569,168,0
chrXVI	903146	.	G	A	1039	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=50.34;MQ0=0;QD=14.43;SB=-7.910e+02	GT:AD:DP:GQ:PL	1/1:0,70:72:99:1072,114,0
chrXVI	903156	.	G	T	1104	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=15.77;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1137,123,0
chrXVI	903285	.	T	C	1312	PASS	AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=19.88;SB=-6.630e+02	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1345,153,0
chrXVI	903372	.	T	C	1408	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=0.293;QD=21.66;ReadPosRankSum=1.626;SB=-7.420e+02	GT:AD:DP:GQ:PL	1/1:1,64:65:99:1441,165,0
chrXVI	903396	.	T	C	1420	PASS	AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.7331;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=20.58;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1453,162,0
chrXVI	903807	.	G	A	1023	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=18.94;SB=-5.870e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1056,114,0
chrXVI	907771	.	C	T	1153	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.85;MQ0=0;QD=18.30;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:0,62:63:99:1186,126,0
chrXVI	907772	.	C	T	1097	PASS	AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=18.28;SB=-6.350e+02	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1130,126,0
chrXVI	907815	.	T	C	1202	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=18.49;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1235,138,0
chrXVI	908134	.	A	C	480	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=48.66;MQ0=0;QD=12.97;SB=-3.680e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:57:513,57,0
chrXVI	908156	.	G	A	442	PASS	AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.11;MQ0=0;QD=9.82;SB=-5.600e+02	GT:AD:DP:GQ:PL	1/1:0,45:45:51:475,51,0
chrXVI	908173	.	A	T	404	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.497;DP=60;Dels=0.00;FS=3.395;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.24;MQ0=0;MQRankSum=-0.088;QD=6.73;ReadPosRankSum=0.382;SB=-6.700e+02	GT:AD:DP:GQ:PL	1/1:1,59:60:48:437,48,0
chrXVI	908318	.	A	G	1503	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.388;DP=81;Dels=0.00;FS=7.932;HaplotypeScore=11.3555;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=-0.546;QD=18.56;ReadPosRankSum=2.388;SB=-7.900e+02	GT:AD:DP:GQ:PL	1/1:2,77:81:99:1536,174,0
chrXVI	908706	.	C	T	4056.01	PASS	AC=2;AF=1.00;AN=2;DP=184;Dels=0.00;FS=0.000;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=22.04;SB=-2.449e+03	GT:AD:DP:GQ:PL	1/1:0,182:184:99:4056,432,0
chrXVI	908852	.	T	C	1606	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.1494;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=22.31;SB=-8.280e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1639,183,0
chrXVI	915200	.	G	C	1875	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=22.06;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1908,213,0
chrXVI	916067	.	G	A	1056	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=19.92;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1089,117,0
chrXVI	916095	.	A	G	1207	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=18.86;SB=-6.380e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1240,138,0
chrXVI	916830	.	A	T	2124	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.87;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2157,228,0
chrXVI	918910	.	G	A	1080	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.2000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=16.62;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1113,117,0
chrXVI	919665	.	G	A	1047	PASS	AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=21.37;SB=-3.970e+02	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1080,114,0
chrXVI	919704	.	G	A	859	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=16.21;SB=-4.730e+02	GT:AD:DP:GQ:PL	1/1:0,52:53:99:892,102,0
chrXVI	919848	.	A	G	1152	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=20.57;SB=-4.650e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1185,132,0
chrXVI	919896	.	C	T	1330	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.3972;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=21.11;SB=-6.920e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1363,150,0
chrXVI	920048	.	T	C	881	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.606;DP=55;Dels=0.00;FS=5.099;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;MQRankSum=1.606;QD=16.02;ReadPosRankSum=1.669;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:1,54:55:99:914,99,0
chrXVI	920052	.	T	C	808	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=15.54;SB=-3.780e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:841,93,0
chrXVI	920178	.	G	C	1047	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.29;MQ0=0;QD=20.53;SB=-5.310e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1080,120,0
chrXVI	920191	.	A	C	1061	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=21.22;SB=-5.850e+02	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1094,120,0
chrXVI	920519	.	A	C	933	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=27.8160;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=16.66;SB=-1.340e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:966,108,0
chrXVI	920598	.	C	T	2513	PASS	AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=6.9111;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;QD=20.94;SB=-1.480e+03	GT:AD:DP:GQ:PL	1/1:0,119:120:99:2546,279,0
chrXVI	920629	.	A	C	2349	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=108;Dels=0.00;FS=3.177;HaplotypeScore=5.8429;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;MQRankSum=-1.732;QD=21.75;ReadPosRankSum=1.667;SB=-1.352e+03	GT:AD:DP:GQ:PL	1/1:1,105:108:99:2382,267,0
chrXVI	920758	.	C	T	2921	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.700;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.4404;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;MQRankSum=-1.541;QD=26.55;ReadPosRankSum=-0.270;SB=-2.240e+02	GT:AD:DP:GQ:PL	1/1:2,108:110:99:2954,303,0
chrXVI	920779	.	T	C	2269	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=0.188;QD=24.66;ReadPosRankSum=1.694;SB=-3.240e+02	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2302,252,0
chrXVI	920827	.	G	A	1114	SnpCluster	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.03;MQ0=0;QD=15.47;SB=-8.230e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1147,120,0
chrXVI	920829	.	C	T	1012	SnpCluster	AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=13.68;SB=-7.670e+02	GT:AD:DP:GQ:PL	1/1:0,73:74:99:1045,117,0
chrXVI	920832	.	G	C	1126	SnpCluster	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=14.44;SB=-8.600e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1159,126,0
chrXVI	920869	.	A	T	1374	PASS	AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.46;MQ0=0;QD=15.27;SB=-1.048e+03	GT:AD:DP:GQ:PL	1/1:0,90:90:99:1407,150,0
chrXVI	922297	.	T	C	1328	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.678;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=0.162;QD=20.75;ReadPosRankSum=1.678;SB=-7.410e+02	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1361,150,0
chrXVI	922477	.	T	C	1950	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.94;SB=-7.270e+02	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1983,219,0
chrXVI	922622	.	A	C	1740	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=20.47;SB=-1.135e+03	GT:AD:DP:GQ:PL	1/1:0,85:85:99:1773,189,0
chrXVI	923621	.	A	G	1673	PASS	AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=3.4379;MLEAC=2;MLEAF=1.00;MQ=49.83;MQ0=0;QD=20.91;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,80:80:99:1706,192,0
chrXVI	923648	.	G	A	937	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=0;QD=17.04;SB=-5.820e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:970,105,0
chrXVI	923654	.	T	C	776	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.667;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.69;MQ0=0;MQRankSum=-0.948;QD=14.64;ReadPosRankSum=1.667;SB=-5.960e+02	GT:AD:DP:GQ:PL	1/1:1,52:53:87:809,87,0
chrXVI	923671	.	A	C	485	PASS	AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.69;MQ0=0;QD=10.32;SB=-4.910e+02	GT:AD:DP:GQ:PL	1/1:0,47:47:57:518,57,0
chrXVI	923684	.	G	C	391	PASS	AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.43;MQ0=0;QD=9.31;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,42:42:48:424,48,0
chrXVI	923699	.	A	G	408	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=41.40;MQ0=0;QD=9.49;SB=-2.930e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:48:441,48,0
chrXVI	923733	.	T	A	687	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.08;MQ0=0;QD=14.93;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:78:720,78,0
chrXVI	923750	.	A	G	874	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.93;MQ0=0;QD=15.61;SB=-5.140e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:907,99,0
chrXVI	923772	.	T	A	1235	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=19.00;SB=-7.940e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1268,132,0
chrXVI	923850	.	C	G	1516	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=18.27;SB=-6.690e+02	GT:AD:DP:GQ:PL	1/1:0,81:83:99:1549,174,0
chrXVI	923860	.	A	C	1596	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=4.4849;MLEAC=2;MLEAF=1.00;MQ=55.15;MQ0=0;MQRankSum=0.846;QD=17.93;ReadPosRankSum=1.652;SB=-6.530e+02	GT:AD:DP:GQ:PL	1/1:1,85:89:99:1629,177,0
chrXVI	923907	.	C	T	2354	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=21.40;SB=-1.329e+03	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2387,258,0
chrXVI	924011	.	C	T	1086	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=51.80;MQ0=0;MQRankSum=0.433;QD=19.39;ReadPosRankSum=-0.928;SB=-5.980e+02	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1119,123,0
chrXVI	924024	.	A	G	967	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.181;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=-0.466;QD=18.60;ReadPosRankSum=1.599;SB=-6.430e+02	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1000,114,0
chrXVI	924063	.	A	G	1339	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;DP=68;Dels=0.00;FS=3.554;HaplotypeScore=3.2726;MLEAC=2;MLEAF=1.00;MQ=52.27;MQ0=0;MQRankSum=1.172;QD=19.69;ReadPosRankSum=1.630;SB=-6.980e+02	GT:AD:DP:GQ:PL	1/1:1,67:68:99:1372,153,0
chrXVI	924094	.	G	A	1717	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;QD=21.20;SB=-9.110e+02	GT:AD:DP:GQ:PL	1/1:0,79:81:99:1750,186,0
chrXVI	924180	.	C	T	2041	PASS	AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=2.5093;MLEAC=2;MLEAF=1.00;MQ=55.63;MQ0=0;QD=21.26;SB=-9.690e+02	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2074,225,0
chrXVI	924280	.	A	G	1463	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.828;DP=76;Dels=0.00;FS=6.113;HaplotypeScore=10.4217;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=-1.521;QD=19.25;ReadPosRankSum=2.908;SB=-9.060e+02	GT:AD:DP:GQ:PL	1/1:3,73:76:99:1496,165,0
chrXVI	924404	.	G	T	1816	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=20.40;SB=-6.190e+02	GT:AD:DP:GQ:PL	1/1:0,89:89:99:1849,198,0
chrXVI	924750	.	A	G	1774	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5095;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=23.04;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,77:77:99:1807,201,0
chrXVI	924915	.	A	G	1452	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.751;DP=77;Dels=0.00;FS=2.613;HaplotypeScore=7.2017;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.356;QD=18.86;ReadPosRankSum=2.856;SB=-5.190e+02	GT:AD:DP:GQ:PL	1/1:3,74:77:99:1485,162,0
chrXVI	925093	.	T	C	1604	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.387;DP=78;Dels=0.00;FS=8.391;HaplotypeScore=3.1982;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=-1.723;QD=20.56;ReadPosRankSum=2.323;SB=-7.570e+02	GT:AD:DP:GQ:PL	1/1:2,76:78:99:1637,177,0
chrXVI	925138	.	A	G	1381	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=21.92;SB=-6.640e+02	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1414,156,0
chrXVI	925172	.	C	G	1724	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=9.4440;MLEAC=2;MLEAF=1.00;MQ=56.66;MQ0=0;QD=22.10;SB=-7.330e+02	GT:AD:DP:GQ:PL	1/1:0,76:78:99:1757,192,0
chrXVI	925240	.	T	A	2057	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.5236;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=23.37;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2090,219,0
chrXVI	925358	.	A	G	1752	PASS	AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=20.14;SB=-8.160e+02	GT:AD:DP:GQ:PL	1/1:0,85:87:99:1785,192,0
chrXVI	925491	.	A	T	1840	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=24.21;SB=-8.870e+02	GT:AD:DP:GQ:PL	1/1:0,76:76:99:1873,198,0
chrXVI	925559	.	T	C	2080	PASS	AC=2;AF=1.00;AN=2;DP=113;Dels=0.00;FS=0.000;HaplotypeScore=3.3493;MLEAC=2;MLEAF=1.00;MQ=51.83;MQ0=0;QD=18.41;SB=-1.297e+03	GT:AD:DP:GQ:PL	1/1:0,112:113:99:2113,234,0
chrXVI	925572	.	C	T	2089	PASS	AC=2;AF=1.00;AN=2;DP=119;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.54;MQ0=0;QD=17.55;SB=-1.354e+03	GT:AD:DP:GQ:PL	1/1:0,119:119:99:2122,228,0
chrXVI	925584	.	T	C	2084	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.562;DP=123;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=50.36;MQ0=0;MQRankSum=0.085;QD=16.94;ReadPosRankSum=1.647;SB=-1.323e+03	GT:AD:DP:GQ:PL	1/1:1,121:123:99:2117,234,0
chrXVI	925593	.	G	C	2318	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.26;MQ0=0;QD=18.40;SB=-1.326e+03	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2351,261,0
chrXVI	925939	.	T	C	2844	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.649;DP=126;Dels=0.00;FS=3.645;HaplotypeScore=4.5218;MLEAC=2;MLEAF=1.00;MQ=55.07;MQ0=0;MQRankSum=0.845;QD=22.57;ReadPosRankSum=1.649;SB=-1.377e+03	GT:AD:DP:GQ:PL	1/1:1,124:126:99:2877,318,0
chrXVI	926181	.	C	T	1897	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=21.56;SB=-1.051e+03	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1930,204,0
chrXVI	926352	.	T	C	1438	PASS	AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=4.6547;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.83;SB=-6.360e+02	GT:AD:DP:GQ:PL	1/1:0,61:62:99:1471,162,0
chrXVI	927353	.	T	G	407	PASS	AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.83;MQ0=0;QD=11.00;SB=-4.330e+02	GT:AD:DP:GQ:PL	1/1:0,37:37:48:440,48,0
chrXVI	927907	.	A	C	2336	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=18.1762;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=20.86;SB=-1.097e+03	GT:AD:DP:GQ:PL	1/1:0,109:112:99:2369,267,0
chrXVI	927980	.	A	G	2577	PASS	AC=2;AF=1.00;AN=2;DP=103;Dels=0.00;FS=0.000;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=25.02;SB=-7.980e+02	GT:AD:DP:GQ:PL	1/1:0,102:103:99:2610,288,0
chrXVI	928226	.	T	C	1770	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;DP=96;Dels=0.00;FS=7.360;HaplotypeScore=11.7859;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;MQRankSum=-0.583;QD=18.44;ReadPosRankSum=2.294;SB=-9.500e+02	GT:AD:DP:GQ:PL	1/1:2,93:96:99:1803,204,0
chrXVI	928300	.	T	C	3022	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=22.22;SB=-1.568e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3055,339,0
chrXVI	928918	.	A	T	2708	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;DP=127;Dels=0.00;FS=7.430;HaplotypeScore=12.8249;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=0.387;QD=21.32;ReadPosRankSum=2.410;SB=-1.336e+03	GT:AD:DP:GQ:PL	1/1:2,125:127:99:2741,291,0
chrXVI	929522	.	C	T	2299	PASS	AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=3.8340;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=21.09;SB=-1.369e+03	GT:AD:DP:GQ:PL	1/1:0,109:109:99:2332,246,0
chrXVI	929870	.	C	T	3929.01	PASS	AC=2;AF=1.00;AN=2;DP=174;Dels=0.00;FS=0.000;HaplotypeScore=9.4620;MLEAC=2;MLEAF=1.00;MQ=59.87;MQ0=0;QD=22.58;SB=-1.388e+03	GT:AD:DP:GQ:PL	1/1:0,174:174:99:3929,415,0
chrXVI	930341	.	A	G	1361	PASS	AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=21.27;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1394,159,0
chrXVI	930431	.	T	C	1671	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.647;DP=81;Dels=0.00;FS=4.033;HaplotypeScore=2.4440;MLEAC=2;MLEAF=1.00;MQ=56.19;MQ0=0;MQRankSum=-0.748;QD=20.63;ReadPosRankSum=1.689;SB=-8.410e+02	GT:AD:DP:GQ:PL	1/1:1,80:81:99:1704,183,0
chrXVI	930436	.	T	C	1673	PASS	AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=20.16;SB=-8.730e+02	GT:AD:DP:GQ:PL	1/1:0,83:83:99:1706,192,0
chrXVI	930549	.	A	T	1676	PASS	AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5689;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=21.49;SB=-7.020e+02	GT:AD:DP:GQ:PL	1/1:0,78:78:99:1709,180,0
chrXVI	930581	.	A	T	1528	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.398;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=5.1381;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.649;QD=18.41;ReadPosRankSum=1.148;SB=-6.840e+02	GT:AD:DP:GQ:PL	1/1:1,82:83:99:1561,174,0
chrXVI	930732	.	T	C	1067	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.505;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;MQRankSum=1.562;QD=17.49;ReadPosRankSum=1.675;SB=-6.290e+02	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1100,123,0
chrXVI	930801	.	C	T	680	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=13.33;SB=-3.840e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:81:713,81,0
chrXVI	930805	.	T	C	931	PASS	AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.67;MQ0=0;QD=18.25;SB=-3.810e+02	GT:AD:DP:GQ:PL	1/1:0,51:51:99:964,102,0
chrXVI	930863	.	T	C	697	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=4.771;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=55.98;MQ0=0;MQRankSum=0.866;QD=19.36;ReadPosRankSum=1.636;SB=-3.020e+02	GT:AD:DP:GQ:PL	1/1:1,35:36:78:730,78,0
chrXVI	930912	.	C	T	1130	PASS	AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=23.54;SB=-6.280e+02	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1163,123,0
chrXVI	930946	.	A	T	1262	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8887;MLEAC=2;MLEAF=1.00;MQ=56.09;MQ0=0;QD=20.35;SB=-6.680e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1295,141,0
chrXVI	930978	.	A	G	1188	PASS	AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=20.84;SB=-6.500e+02	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1221,132,0
chrXVI	930986	.	G	A	1122	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=20.78;SB=-6.420e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1155,123,0
chrXVI	931061	.	G	C	772	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=3.2819;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=16.78;SB=-5.790e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:87:805,87,0
chrXVI	931077	.	T	C	811	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=15.02;SB=-5.300e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:93:844,93,0
chrXVI	931106	.	G	T	813	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=14.78;SB=-4.470e+02	GT:AD:DP:GQ:PL	1/1:0,54:55:93:846,93,0
chrXVI	931141	.	T	C	741	PASS	AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=12.78;SB=-4.120e+02	GT:AD:DP:GQ:PL	1/1:0,58:58:87:774,87,0
chrXVI	931146	.	C	A	769	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.39;MQ0=0;QD=13.98;SB=-4.550e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:84:802,84,0
chrXVI	931153	.	A	G	810	PASS	AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.39;MQ0=0;QD=15.58;SB=-4.320e+02	GT:AD:DP:GQ:PL	1/1:0,52:52:93:843,93,0
chrXVI	931213	.	T	C	1003	PASS	AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=18.92;SB=-4.490e+02	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1036,114,0
chrXVI	931293	.	T	C	1669	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=23.18;SB=-7.190e+02	GT:AD:DP:GQ:PL	1/1:0,71:72:99:1702,189,0
chrXVI	931361	.	C	G	1854	PASS	AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=3.2847;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;QD=24.39;SB=-8.550e+02	GT:AD:DP:GQ:PL	1/1:1,75:76:99:1887,210,0
chrXVI	931462	.	G	A	1464	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=5.5988;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=19.01;SB=-9.100e+02	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1497,159,0
chrXVI	931585	.	G	A	1624	PASS	AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.0649;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=22.56;SB=-8.120e+02	GT:AD:DP:GQ:PL	1/1:0,72:72:99:1657,177,0
chrXVI	931814	.	G	A	1899	PASS	AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.34;SB=-1.095e+03	GT:AD:DP:GQ:PL	1/1:0,87:89:99:1932,216,0
chrXVI	931903	.	T	C	2017	PASS	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=11.2167;MLEAC=2;MLEAF=1.00;MQ=54.68;MQ0=0;QD=19.21;SB=-9.980e+02	GT:AD:DP:GQ:PL	1/1:0,104:105:99:2050,228,0
chrXVI	931917	.	G	A	1728	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=53.25;MQ0=0;QD=18.99;SB=-8.060e+02	GT:AD:DP:GQ:PL	1/1:0,91:91:99:1761,186,0
chrXVI	931948	.	C	T	2117	PASS	AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=5.5642;MLEAC=2;MLEAF=1.00;MQ=55.16;MQ0=0;QD=21.17;SB=-8.630e+02	GT:AD:DP:GQ:PL	1/1:0,99:100:99:2150,234,0
chrXVI	932030	.	T	A	1995	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=88;Dels=0.00;FS=3.217;HaplotypeScore=5.5208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.967;QD=22.67;ReadPosRankSum=1.692;SB=-1.094e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2028,213,0
chrXVI	932168	.	C	A	1579	PASS	AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=21.05;SB=-8.110e+02	GT:AD:DP:GQ:PL	1/1:0,75:75:99:1612,171,0
chrXVI	932310	.	T	C	2002	PASS	AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=47.50;MQ0=0;QD=17.87;SB=-9.210e+02	GT:AD:DP:GQ:PL	1/1:0,112:112:99:2035,225,0
chrXVI	932313	.	G	C	1905	PASS	AC=2;AF=1.00;AN=2;DP=111;Dels=0.00;FS=0.000;HaplotypeScore=2.5352;MLEAC=2;MLEAF=1.00;MQ=47.84;MQ0=0;QD=17.16;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:0,111:111:99:1938,213,0
chrXVI	932448	.	C	T	1743	PASS	AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=9.0053;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=22.64;SB=-1.011e+03	GT:AD:DP:GQ:PL	1/1:0,76:77:99:1776,189,0
chrXVI	932535	.	T	G	1031	SnpCluster	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.39;MQ0=0;QD=15.86;SB=-8.310e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1064,120,0
chrXVI	932536	.	G	C	978	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=15.77;SB=-8.020e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1011,117,0
chrXVI	932537	.	A	G	968	SnpCluster	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.93;MQ0=0;QD=15.61;SB=-7.830e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1001,117,0
chrXVI	932542	.	A	G	978	SnpCluster	AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=14.60;SB=-7.650e+02	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1011,114,0
chrXVI	932662	.	A	G	1163	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.338;DP=85;Dels=0.00;FS=29.892;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=47.20;MQ0=0;MQRankSum=6.474;QD=13.68;ReadPosRankSum=-3.180;SB=-5.180e+02	GT:AD:DP:GQ:PL	1/1:23,62:85:99:1196,132,0
chrXVI	932770	.	A	C	746	PASS	AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=17.35;SB=-3.430e+02	GT:AD:DP:GQ:PL	1/1:0,43:43:90:779,90,0
chrXVI	932855	.	C	T	1394	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=19.91;SB=-4.210e+02	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1427,150,0
chrXVI	932882	.	C	A	1579	PASS	AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=15.5086;MLEAC=2;MLEAF=1.00;MQ=52.62;MQ0=0;QD=17.35;SB=-6.760e+02	GT:AD:DP:GQ:PL	1/1:0,90:91:99:1612,174,0
chrXVI	933153	.	A	G	1570	PASS	AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=19.38;SB=-7.530e+02	GT:AD:DP:GQ:PL	1/1:0,81:81:99:1603,180,0
chrXVI	933174	.	G	C	1370	PASS	AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=72.3103;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=16.12;SB=-7.850e+02	GT:AD:DP:GQ:PL	1/1:0,84:85:99:1403,156,0
chrXVI	933227	.	A	T	1860	PASS	AC=2;AF=1.00;AN=2;DP=104;Dels=0.00;FS=0.000;HaplotypeScore=4.9301;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=17.88;SB=-1.150e+03	GT:AD:DP:GQ:PL	1/1:0,104:104:99:1893,210,0
chrXVI	933312	.	A	G	2552	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;DP=144;Dels=0.00;FS=2.725;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=51.40;MQ0=0;MQRankSum=-0.627;QD=17.72;ReadPosRankSum=2.415;SB=-1.381e+03	GT:AD:DP:GQ:PL	1/1:2,141:144:99:2585,288,0
chrXVI	933316	.	C	T	2332	PASS	AC=2;AF=1.00;AN=2;DP=137;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=17.02;SB=-1.288e+03	GT:AD:DP:GQ:PL	1/1:0,137:137:99:2365,261,0
chrXVI	933358	.	G	A	2486	PASS	AC=2;AF=1.00;AN=2;DP=131;Dels=0.00;FS=0.000;HaplotypeScore=4.1281;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=18.98;SB=-1.440e+03	GT:AD:DP:GQ:PL	1/1:0,131:131:99:2519,267,0
chrXVI	933378	.	T	C	2547	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=142;Dels=0.00;FS=3.262;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;MQRankSum=0.683;QD=17.94;ReadPosRankSum=1.659;SB=-1.588e+03	GT:AD:DP:GQ:PL	1/1:1,141:142:99:2580,285,0
chrXVI	933425	.	A	G	2763	PASS	AC=2;AF=1.00;AN=2;DP=132;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=20.93;SB=-1.478e+03	GT:AD:DP:GQ:PL	1/1:0,132:132:99:2796,309,0
chrXVI	933484	.	G	T	2081	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=7.7774;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=20.40;SB=-8.820e+02	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2114,234,0
chrXVI	933594	.	A	G	2279	PASS	AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=8.6208;MLEAC=2;MLEAF=1.00;MQ=56.87;MQ0=0;QD=23.26;SB=-1.016e+03	GT:AD:DP:GQ:PL	1/1:0,96:98:99:2312,255,0
chrXVI	933635	.	C	T	2203	PASS	AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=5.1073;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=22.25;SB=-9.790e+02	GT:AD:DP:GQ:PL	1/1:0,98:99:99:2236,243,0
chrXVI	933712	.	T	G	2991	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=5.4661;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=24.72;SB=-1.404e+03	GT:AD:DP:GQ:PL	1/1:0,120:121:99:3024,327,0
chrXVI	934582	.	C	T	1217	PASS	AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=24.34;SB=-4.770e+02	GT:AD:DP:GQ:PL	1/1:0,49:50:99:1250,135,0
chrXVI	934801	.	G	A	1284	PASS	AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=3.0224;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=23.78;SB=-4.200e+02	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1317,144,0
chrXVI	934877	.	T	C	1171	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;MQRankSum=0.335;QD=18.89;ReadPosRankSum=1.676;SB=-6.010e+02	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1204,132,0
chrXVI	934884	.	C	T	1254	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=18.44;SB=-6.710e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1287,138,0
chrXVI	935125	.	A	G	1295	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.632;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;MQRankSum=0.226;QD=18.77;ReadPosRankSum=1.632;SB=-8.320e+02	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1328,147,0
chrXVI	935140	.	C	G	1065	PASS	AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=15.21;SB=-7.460e+02	GT:AD:DP:GQ:PL	1/1:0,69:70:99:1098,123,0
chrXVI	935143	.	C	T	1091	PASS	AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=52.00;MQ0=0;QD=16.04;SB=-7.640e+02	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1124,126,0
chrXVI	935215	.	C	A	1372	PASS	AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=3.1547;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=18.79;SB=-9.460e+02	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1405,147,0
chrXVI	935251	.	A	T	1295	PASS	AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=20.89;SB=-8.090e+02	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1328,141,0
chrXVI	935320	.	T	G	1385	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=6.4527;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;MQRankSum=-0.433;QD=19.24;ReadPosRankSum=1.684;SB=-6.940e+02	GT:AD:DP:GQ:PL	1/1:1,71:72:99:1418,156,0
chrXVI	935664	.	G	A	2923	PASS	AC=2;AF=1.00;AN=2;DP=138;Dels=0.00;FS=0.000;HaplotypeScore=9.0855;MLEAC=2;MLEAF=1.00;MQ=59.83;MQ0=0;QD=21.18;SB=-1.571e+03	GT:AD:DP:GQ:PL	1/1:0,137:138:99:2956,327,0
chrXVI	935807	.	G	C	4158.01	PASS	AC=2;AF=1.00;AN=2;DP=192;Dels=0.00;FS=0.000;HaplotypeScore=11.1928;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=21.66;SB=-1.835e+03	GT:AD:DP:GQ:PL	1/1:0,189:192:99:4158,465,0
chrXVI	936777	.	C	T	1075	PASS	AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=23.37;SB=-3.960e+02	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1108,117,0
chrXVI	937324	.	T	C	1937	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.653;DP=88;Dels=0.00;FS=3.212;HaplotypeScore=5.7237;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;MQRankSum=-0.236;QD=22.01;ReadPosRankSum=1.693;SB=-1.023e+03	GT:AD:DP:GQ:PL	1/1:1,87:88:99:1970,219,0
chrXVI	937566	.	G	T	2837	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=3.6784;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=22.52;SB=-6.550e+02	GT:AD:DP:GQ:PL	1/1:0,126:126:99:2870,306,0
chrXVI	937724	.	A	G	2495	PASS	AC=2;AF=1.00;AN=2;DP=126;Dels=0.00;FS=0.000;HaplotypeScore=2.5105;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=19.80;SB=-1.341e+03	GT:AD:DP:GQ:PL	1/1:0,125:126:99:2528,279,0
chrXVI	937737	.	G	A	2614	PASS	AC=2;AF=1.00;AN=2;DP=127;Dels=0.00;FS=0.000;HaplotypeScore=4.7321;MLEAC=2;MLEAF=1.00;MQ=56.84;MQ0=0;QD=20.58;SB=-1.518e+03	GT:AD:DP:GQ:PL	1/1:0,125:127:99:2647,282,0
chrXVI	938003	.	A	G	2702	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.615;DP=118;Dels=0.00;FS=0.000;HaplotypeScore=5.6899;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=-1.292;QD=22.90;ReadPosRankSum=1.703;SB=-1.158e+03	GT:AD:DP:GQ:PL	1/1:1,117:118:99:2735,303,0
chrXVI	938107	.	A	T	3175	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;DP=139;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;MQRankSum=1.155;QD=22.84;ReadPosRankSum=1.657;SB=-1.740e+03	GT:AD:DP:GQ:PL	1/1:1,138:139:99:3208,351,0
chrXVI	938127	.	G	A	3179	PASS	AC=2;AF=1.00;AN=2;DP=136;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=23.37;SB=-1.859e+03	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3212,336,0
chrXVI	939489	.	G	C	2176	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=6.2547;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.73;SB=-6.090e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2209,243,0
chrXVI	939663	.	A	G	1684	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.392;DP=87;Dels=0.00;FS=3.032;HaplotypeScore=7.4009;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;MQRankSum=0.623;QD=19.36;ReadPosRankSum=2.363;SB=-1.044e+03	GT:AD:DP:GQ:PL	1/1:2,83:87:99:1717,186,0
chrXVI	940511	.	A	G	1204	PASS	AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=21.89;SB=-6.960e+02	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1237,141,0
chrXVI	940653	.	A	G	2331	PASS	AC=2;AF=1.00;AN=2;DP=115;Dels=0.00;FS=0.000;HaplotypeScore=8.0083;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=20.27;SB=-7.660e+02	GT:AD:DP:GQ:PL	1/1:0,114:115:99:2364,264,0
chrXVI	941049	.	G	A	1960	PASS	AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=3.9394;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=22.27;SB=-9.440e+02	GT:AD:DP:GQ:PL	1/1:0,88:88:99:1993,210,0
chrXVI	941176	.	A	G	2483	PASS	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=5.6986;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=22.57;SB=-1.139e+03	GT:AD:DP:GQ:PL	1/1:0,109:110:99:2516,276,0
chrXVI	941337	.	G	A	1264	PASS	AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=22.57;SB=-5.240e+02	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1297,138,0
chrXVI	941366	.	C	T	1303	PASS	AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3326;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=20.05;SB=-7.230e+02	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1336,144,0
chrXVI	941559	.	G	A	2253	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.526;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=8.1326;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.600;QD=22.09;ReadPosRankSum=1.664;SB=-8.950e+02	GT:AD:DP:GQ:PL	1/1:1,100:102:99:2286,239,0
chrXVI	941642	.	C	T	2463	PASS	AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.0214;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=24.15;SB=-1.104e+03	GT:AD:DP:GQ:PL	1/1:0,101:102:99:2496,264,0
chrXVI	941677	.	C	T	2543	PASS	AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=4.7139;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=22.31;SB=-1.178e+03	GT:AD:DP:GQ:PL	1/1:0,112:114:99:2576,279,0
chrXVI	941772	.	A	T	1996	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.694;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=56.39;MQ0=0;MQRankSum=-1.017;QD=21.70;ReadPosRankSum=1.619;SB=-1.193e+03	GT:AD:DP:GQ:PL	1/1:1,91:92:99:2029,222,0
chrXVI	941801	.	T	C	2461	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;DP=115;Dels=0.00;FS=3.326;HaplotypeScore=7.0981;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;MQRankSum=-1.550;QD=21.40;ReadPosRankSum=1.671;SB=-1.295e+03	GT:AD:DP:GQ:PL	1/1:1,113:115:99:2494,276,0
chrXVI	941879	.	A	G	3379.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.640;DP=151;Dels=0.00;FS=0.000;HaplotypeScore=9.4642;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.424;QD=22.38;ReadPosRankSum=1.709;SB=-1.865e+03	GT:AD:DP:GQ:PL	1/1:1,150:151:99:3379,372,0
chrXVI	942010	.	G	C	2333	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=4.7755;MLEAC=2;MLEAF=1.00;MQ=48.03;MQ0=0;QD=19.12;SB=-1.412e+03	GT:AD:DP:GQ:PL	1/1:0,121:122:99:2366,258,0
chrXVI	942021	.	T	C	2368	PASS	AC=2;AF=1.00;AN=2;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=7.3125;MLEAC=2;MLEAF=1.00;MQ=47.07;MQ0=0;QD=19.10;SB=-1.534e+03	GT:AD:DP:GQ:PL	1/1:0,123:124:99:2401,270,0
chrXVI	942078	.	T	A	2517	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.618;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=4.9223;MLEAC=2;MLEAF=1.00;MQ=50.87;MQ0=0;MQRankSum=-1.131;QD=20.80;ReadPosRankSum=1.618;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:1,120:121:99:2550,276,0
chrXVI	942107	.	G	T	2808	PASS	AC=2;AF=1.00;AN=2;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.53;MQ0=0;QD=23.21;SB=-9.150e+02	GT:AD:DP:GQ:PL	1/1:0,121:121:99:2841,318,0
chrXVI	942124	.	A	T	2769	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.703;DP=119;Dels=0.00;FS=4.421;HaplotypeScore=2.7090;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;MQRankSum=-0.277;QD=23.27;ReadPosRankSum=1.703;SB=-1.093e+03	GT:AD:DP:GQ:PL	1/1:1,118:119:99:2802,303,0
chrXVI	942158	.	T	C	2616	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=46.93;MQ0=0;QD=21.44;SB=-1.502e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2649,306,0
chrXVI	942173	.	G	A	2711	PASS	AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.63;MQ0=0;QD=22.22;SB=-1.403e+03	GT:AD:DP:GQ:PL	1/1:0,122:122:99:2744,291,0
chrXVI	942206	.	T	C	2487	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.252;DP=118;Dels=0.00;FS=4.884;HaplotypeScore=10.2158;MLEAC=2;MLEAF=1.00;MQ=51.27;MQ0=0;MQRankSum=0.577;QD=21.08;ReadPosRankSum=1.229;SB=-9.040e+02	GT:AD:DP:GQ:PL	1/1:1,116:118:99:2520,282,0
chrXVI	942307	.	G	A	1864	SnpCluster	AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=5.1102;MLEAC=2;MLEAF=1.00;MQ=38.02;MQ0=0;QD=18.46;SB=-1.170e+02	GT:AD:DP:GQ:PL	1/1:0,101:101:99:1897,207,0
chrXVI	942311	.	A	G	1897	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=4.1314;MLEAC=2;MLEAF=1.00;MQ=35.74;MQ0=0;MQRankSum=-1.822;QD=18.60;ReadPosRankSum=2.401;SB=-1.150e+02	GT:AD:DP:GQ:PL	1/1:2,100:102:99:1930,219,0
chrXVI	942315	.	A	G	1984	SnpCluster	AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=36.01;MQ0=0;QD=18.90;SB=-1.020e+02	GT:AD:DP:GQ:PL	1/1:0,105:105:99:2017,228,0
chrXVI	942317	.	G	A	2142	SnpCluster	AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=36.76;MQ0=0;QD=19.47;SB=-9.901e+01	GT:AD:DP:GQ:PL	1/1:0,110:110:99:2175,234,0
chrXVI	942354	.	G	T	2780	PASS	AC=2;AF=1.00;AN=2;DP=148;Dels=0.01;FS=0.000;HaplotypeScore=127.2336;MLEAC=2;MLEAF=1.00;MQ=42.52;MQ0=0;QD=18.78;SB=-2.330e+02	GT:AD:DP:GQ:PL	1/1:0,144:146:99:2813,318,0
chrXVI	942411	.	C	A	20.05	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.658;DP=214;Dels=0.01;FS=366.127;HaplotypeScore=21.0926;MLEAC=1;MLEAF=0.500;MQ=36.28;MQ0=5;MQRankSum=-4.166;QD=0.09;ReadPosRankSum=-7.756;SB=-2.881e+00	GT:AD:DP:GQ:PL	0/1:101,111:212:50:50,0,1711
chrXVI	942414	.	C	A	23.03	LowQual;SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.332;DP=213;Dels=0.00;FS=396.143;HaplotypeScore=26.7183;MLEAC=1;MLEAF=0.500;MQ=35.77;MQ0=5;MQRankSum=-2.810;QD=0.11;ReadPosRankSum=-3.291;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:102,111:213:53:53,0,1692
chrXVI	942416	.	C	T	35.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=9.116;DP=211;Dels=0.00;FS=422.939;HaplotypeScore=26.7183;MLEAC=1;MLEAF=0.500;MQ=35.46;MQ0=5;MQRankSum=-4.036;QD=0.17;ReadPosRankSum=-1.039;SB=0.631	GT:AD:DP:GQ:PL	0/1:101,109:211:65:65,0,1648
chrXVI	942420	.	A	G	48.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.649;DP=204;Dels=0.00;FS=431.997;HaplotypeScore=27.2767;MLEAC=1;MLEAF=0.500;MQ=34.91;MQ0=5;MQRankSum=-3.100;QD=0.24;ReadPosRankSum=2.558;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:95,109:204:78:78,0,1496
chrXVI	942422	.	T	G	36.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;DP=202;Dels=0.00;FS=405.731;HaplotypeScore=60.0060;MLEAC=1;MLEAF=0.500;MQ=34.77;MQ0=5;MQRankSum=-2.713;QD=0.18;ReadPosRankSum=3.182;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:93,105:202:66:66,0,1445
chrXVI	942427	.	G	A	1464	SnpCluster;filter	AC=2;AF=1.00;AN=2;DP=179;Dels=0.00;FS=0.000;HaplotypeScore=62.9942;MLEAC=2;MLEAF=1.00;MQ=33.08;MQ0=5;QD=8.18;SB=-1.377e+03	GT:AD:DP:GQ:PL	1/1:0,179:179:99:1497,168,0
chrXVI	942429	.	T	A	66.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;DP=174;Dels=0.00;FS=248.543;HaplotypeScore=57.5918;MLEAC=1;MLEAF=0.500;MQ=31.98;MQ0=5;MQRankSum=1.976;QD=0.38;ReadPosRankSum=3.759;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:70,104:174:96:96,0,1011
chrXVI	942430	.	T	A	63.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.602;DP=302;Dels=0.00;FS=77.613;HaplotypeScore=90.7405;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=5;MQRankSum=0.124;QD=0.21;ReadPosRankSum=11.015;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:204,98:302:93:93,0,910
chrXVI	942431	.	A	T	77.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=8.947;DP=300;Dels=0.00;FS=101.629;HaplotypeScore=89.1632;MLEAC=1;MLEAF=0.500;MQ=29.34;MQ0=5;MQRankSum=0.894;QD=0.26;ReadPosRankSum=11.586;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:204,96:300:99:107,0,852
chrXVI	942440	.	G	A	696.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.234;DP=335;Dels=0.00;FS=408.020;HaplotypeScore=84.9741;MLEAC=1;MLEAF=0.500;MQ=27.51;MQ0=5;MQRankSum=-0.847;QD=2.08;ReadPosRankSum=0.177;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:285,50:335:99:726,0,322
chrXVI	942453	.	T	A	519.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DP=316;Dels=0.00;FS=454.705;HaplotypeScore=79.6295;MLEAC=1;MLEAF=0.500;MQ=27.82;MQ0=5;MQRankSum=0.425;QD=1.64;ReadPosRankSum=1.153;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:277,39:316:99:549,0,534
chrXVI	942466	.	G	T	750	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=0.653;DP=243;Dels=0.00;FS=0.000;HaplotypeScore=236.3022;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=1.593;QD=3.09;ReadPosRankSum=-0.496;SB=-7.810e+02	GT:AD:DP:GQ:PL	1/1:1,198:243:93:783,93,0
chrXVI	942467	.	T	C	357.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;DP=243;Dels=0.00;FS=59.572;HaplotypeScore=281.5566;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=0.254;QD=1.47;ReadPosRankSum=0.590;SB=-7.420e+02	GT:AD:DP:GQ:PL	0/1:103,140:243:99:387,0,208
chrXVI	942471	.	T	A	1319	SnpCluster	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552;DP=246;Dels=0.00;FS=0.000;HaplotypeScore=286.6925;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=0.644;QD=5.36;ReadPosRankSum=-1.581;SB=-8.680e+02	GT:AD:DP:GQ:PL	1/1:2,244:246:99:1352,153,0
chrXVI	942476	.	T	C	421.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.257;DP=248;Dels=0.00;FS=419.113;HaplotypeScore=248.2164;MLEAC=1;MLEAF=0.500;MQ=28.28;MQ0=0;MQRankSum=1.183;QD=1.70;ReadPosRankSum=1.141;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:214,34:248:99:451,0,601
chrXVI	942477	.	G	A	66.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DP=242;Dels=0.00;FS=37.069;HaplotypeScore=205.7094;MLEAC=1;MLEAF=0.500;MQ=28.26;MQ0=0;MQRankSum=-1.244;QD=0.27;ReadPosRankSum=-3.035;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:190,52:242:96:96,0,987
chrXVI	942479	.	C	A	496.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=4.939;DP=238;Dels=0.00;FS=420.236;HaplotypeScore=193.2218;MLEAC=1;MLEAF=0.500;MQ=28.25;MQ0=0;MQRankSum=0.891;QD=2.08;ReadPosRankSum=1.021;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:203,35:238:99:526,0,576
chrXVI	942488	.	G	A	679.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=2.907;DP=199;Dels=0.00;FS=153.516;HaplotypeScore=89.9691;MLEAC=1;MLEAF=0.500;MQ=28.35;MQ0=0;MQRankSum=1.507;QD=3.41;ReadPosRankSum=5.349;SB=-6.410e+02	GT:AD:DP:GQ:PL	0/1:119,79:199:99:709,0,216
chrXVI	942491	.	T	A	233.01	SnpCluster;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;DP=176;Dels=0.00;FS=36.784;HaplotypeScore=57.0626;MLEAC=1;MLEAF=0.500;MQ=28.38;MQ0=0;MQRankSum=0.845;QD=1.32;ReadPosRankSum=3.665;SB=-6.519e-03	GT:AD:DP:GQ:PL	0/1:131,44:176:99:263,0,671
chrXVI	942497	.	G	A	262.01	SnpCluster	AC=1;AF=0.500;AN=2;BaseQRankSum=5.179;DP=123;Dels=0.00;FS=253.217;HaplotypeScore=53.0633;MLEAC=1;MLEAF=0.500;MQ=28.30;MQ0=0;MQRankSum=0.271;QD=2.13;ReadPosRankSum=4.209;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:99,24:123:99:292,0,418
chrXVI	942509	.	T	G	186.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;DP=88;Dels=0.00;FS=204.817;HaplotypeScore=3.7714;MLEAC=1;MLEAF=0.500;MQ=28.31;MQ0=0;MQRankSum=0.120;QD=2.11;ReadPosRankSum=3.252;SB=-3.017e+00	GT:AD:DP:GQ:PL	0/1:66,22:88:99:216,0,384
chrXVI	942534	.	A	G	10.48	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=2.526;DP=15;Dels=0.00;FS=26.580;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.44;MQ0=0;MQRankSum=-2.670;QD=0.70;ReadPosRankSum=2.382;SB=-3.076e+00	GT:AD:DP:GQ:PL	0/1:3,12:15:15:40,0,15
chrXVI	942546	.	A	G	13.22	LowQual;filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;DP=35;Dels=0.00;FS=38.226;HaplotypeScore=16.0505;MLEAC=1;MLEAF=0.500;MQ=21.57;MQ0=3;MQRankSum=0.139;QD=0.38;ReadPosRankSum=3.791;SB=0.965	GT:AD:DP:GQ:PL	0/1:17,17:35:43:43,0,180
chrXVI	942550	.	G	A	161.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;DP=63;Dels=0.00;FS=29.561;HaplotypeScore=22.3164;MLEAC=1;MLEAF=0.500;MQ=19.23;MQ0=4;MQRankSum=-3.954;QD=2.56;ReadPosRankSum=-1.826;SB=-6.602e+01	GT:AD:DP:GQ:PL	0/1:7,56:63:92:191,0,92
chrXVI	942589	.	G	A	350.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=4.706;DP=171;Dels=0.00;FS=6.190;HaplotypeScore=16.9034;MLEAC=1;MLEAF=0.500;MQ=26.55;MQ0=4;MQRankSum=-0.513;QD=2.05;ReadPosRankSum=0.751;SB=-7.801e+01	GT:AD:DP:GQ:PL	0/1:128,42:171:99:380,0,1851
chrXVI	942728	.	C	T	165.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DP=68;Dels=0.00;FS=3.901;HaplotypeScore=21.2944;MLEAC=1;MLEAF=0.500;MQ=25.10;MQ0=15;MQRankSum=-0.374;QD=2.43;ReadPosRankSum=-0.374;SB=-5.007e+00	GT:AD:DP:GQ:PL	0/1:49,18:68:99:195,0,557
chrXVI	943160	.	G	T	956	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=3.305;DP=318;Dels=0.00;FS=94.274;HaplotypeScore=20.5057;MLEAC=2;MLEAF=1.00;MQ=14.84;MQ0=174;MQRankSum=7.472;QD=3.01;ReadPosRankSum=-2.792;SB=-5.150e+02	GT:AD:DP:GQ:PL	1/1:250,68:318:99:989,108,0
chrXVI	943229	.	A	T	327	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.425;DP=436;Dels=0.00;FS=0.000;HaplotypeScore=103.4529;MLEAC=2;MLEAF=1.00;MQ=9.33;MQ0=255;MQRankSum=1.127;QD=0.75;ReadPosRankSum=-2.052;SB=-2.540e+02	GT:AD:DP:GQ:PL	1/1:38,398:436:39:360,39,0
chrXVI	943530	.	C	T	246	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=2.481;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=4.44;MQ0=879;MQRankSum=6.249;QD=0.25;ReadPosRankSum=1.758;SB=-1.465e-02	GT:AD:DP:GQ:PL	1/1:931,68:1000:30:279,30,0
chrXVI	943566	.	G	C	120.13	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.884;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=19.8039;MLEAC=2;MLEAF=1.00;MQ=4.11;MQ0=873;MQRankSum=5.464;QD=0.12;ReadPosRankSum=-1.376;SB=-1.247e-01	GT:AD:DP:GQ:PL	1/1:975,11:1000:18:153,18,0
chrXVI	943578	.	G	A	52.97	filter	AC=2;AF=1.00;AN=2;BaseQRankSum=1.439;DP=1000;DS;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=3.63;MQ0=893;MQRankSum=4.684;QD=0.05;ReadPosRankSum=-2.233;SB=-7.155e-01	GT:AD:DP:GQ:PL	1/1:979,16:1000:9:85,9,0
chrXVI	946244	.	G	A	760	filter	AC=2;AF=1.00;AN=2;DP=275;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.39;MQ0=227;QD=2.76;SB=-3.850e+02	GT:AD:DP:GQ:PL	1/1:216,59:275:93:793,93,0
chrXVI	946287	.	G	A	671.01	filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;DP=271;Dels=0.00;FS=2.448;HaplotypeScore=23.8153;MLEAC=1;MLEAF=0.500;MQ=9.95;MQ0=159;MQRankSum=7.192;QD=2.48;ReadPosRankSum=-1.542;SB=-3.270e+02	GT:AD:DP:GQ:PL	0/1:201,66:271:55:701,0,55